BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003005
(858 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 193/655 (29%), Positives = 286/655 (43%), Gaps = 80/655 (12%)
Query: 162 TTHTPQFLGL--PQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSH 219
TTHT FL L G W G G+ V++ +D+GI P SF DD +P
Sbjct: 1 TTHTSDFLKLNPSSGLWPASG----LGQDVIVAVLDSGIWPESASFQDDGMPE---IPKR 53
Query: 220 FSGICEVTRDFPSGSCNRKLIGARHFAASAITRG-IFNSSQDYASPFDGDGHGSHTASVA 278
+ GIC+ F + CNRKLIGA +F + N + + A D DGHG+H AS+
Sbjct: 54 WKGICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSAR--DTDGHGTHCASIT 111
Query: 279 AGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXS 338
AGN V G+ G A G+APR+ +AVYK + G F S
Sbjct: 112 AGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE-GTFTSDLIAAMDQAVADGVDMIS 170
Query: 339 LSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAA 398
+S P + + I +A A G+ V +AGN GP S+++ SPWI V +
Sbjct: 171 ISYGYRFIP----LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASG 226
Query: 399 SHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALXXXXXXXDDMYVGECQDSSN 458
DR + ++ LGN L I G L P A + + +C
Sbjct: 227 HTDRTFAGTLTLGNGLKIRGWSLFPA-----------RAFVRDSPVIYNKTLSDCSSEEL 275
Query: 459 FNQ-DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPM 517
+Q + + ++IC + F + I +A L AA I DP V P P
Sbjct: 276 LSQVENPENTIVICDDNGDFSDQMRIITRA-----RLKAA-IFISEDPGVFRSATFPNP- 328
Query: 518 KMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYY 577
G+++ + +++ NS +T + + AP +
Sbjct: 329 ---GVVVNKKEGKQVINYVKNSVTPTATITFQETYLD-------------TKPAPVVAAS 372
Query: 578 SARGPDPEDSFLDDADIMKPNLVAPGNSIWAAW------SSLGTDSVEFQGESFAMMSGT 631
SARGP S+L I KP+++APG I AA+ +S+GT+ + + + SGT
Sbjct: 373 SARGP--SRSYLG---ISKPDILAPGVLILAAYPPNVFATSIGTNIL--LSTDYILESGT 425
Query: 632 SMAAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAYAKPDENQSPA 691
SMAAPH AG+AA++K D PI K +N A
Sbjct: 426 SMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI-------KDSDNNKAA 478
Query: 692 TPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTISG 751
TP DMG+G V+ +LDPGLV+DA+ DY++ LC +N + ++ ++N +
Sbjct: 479 TPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEE-QFKTIARSSASHNCSNPS 537
Query: 752 ADLNLPS-ITIARLNQSRTV-----QRTLTNIA-GNETYSVGWSAPYGVSMKVSP 799
ADLN PS I + + + T+ +RT+TN+ G TY AP ++ VSP
Sbjct: 538 ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSP 592
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 198/710 (27%), Positives = 303/710 (42%), Gaps = 114/710 (16%)
Query: 162 TTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFS 221
TT + FLG P + +V+G +DTGI P PSF D E P P +
Sbjct: 1 TTRSWDFLGFP----LTVPRRSQVESNIVVGVLDTGIWPESPSFDD---EGFSPPPPKWK 53
Query: 222 GICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGN 281
G CE + +F CNRK+IGAR + I R I S D P D +GHG+HTAS AAG
Sbjct: 54 GTCETSNNF---RCNRKIIGARSYH---IGRPI--SPGDVNGPRDTNGHGTHTASTAAGG 105
Query: 282 HGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSI 341
+ G G A G P + IA YK + G SLS+
Sbjct: 106 LVSQANLYGLGLGTARGGVPLARIAAYKVCWND-GCSDTDILAAYDDAIADGVDIISLSV 164
Query: 342 T-PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400
N R F + I + A + GI +AGN GP+ + +S SPW+ +V A++
Sbjct: 165 GGANPR----HYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTM 220
Query: 401 DRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALXXXXXXXDDMYVGECQDSSNFN 460
DR + + +GN + GV + ++ Y L+S + C D S N
Sbjct: 221 DRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRF---CTDKS-VN 276
Query: 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS-AAGIVF------YMDPFVIGFQLN 513
+L++G +++C S E K+L AAG++ Y D +
Sbjct: 277 PNLLKGKIVVCEASF----------GPHEFFKSLDGAAGVLMTSNTRDYADSY------- 319
Query: 514 PTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573
+P ++ P+D L+Y S K + SAP
Sbjct: 320 ----PLPSSVL-DPNDLLATLRYIYSIRSPGATIFKSTTI-------------LNASAPV 361
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
++ +S+RGP+ D++KP++ PG I AAW S+ + F ++SGTSM
Sbjct: 362 VVSFSSRGPNRATK-----DVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSM 416
Query: 634 AAPHIAGLAALIKQKXXXXXXXXXXXXXXXXXXXYDKNGGPIMAQRAY---AKP-DENQS 689
+ PHI G+A +K Y+ P + A A P + +
Sbjct: 417 SCPHITGIATYVKT--------------------YNPTWSPAAIKSALMTTASPMNARFN 456
Query: 690 PATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNYTGQNCWAYNSTI 749
P F GSG VN ++ PGLV+DA+ +DY+ FLCG ++ V TG Y++
Sbjct: 457 PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGD----YSACT 512
Query: 750 SGA-----DLNLPSITIARLNQSRT----VQRTLTNIAGN-ETYSVGWSAPYGVSMKVSP 799
SG DLN PS ++ ++ S+T RTLT++A TY SAP G+++ V+P
Sbjct: 513 SGNTGRVWDLNYPSFGLS-VSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNP 571
Query: 800 THFSI-ASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNIPLSVVA 848
S G+++ + + G S + + + H V P+++ +
Sbjct: 572 NVLSFNGLGDRKSFTLTVRGSIKGFVVSASLV--WSDGVHYVRSPITITS 619
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSM 633
I +S+RGP ++ +KP +VAPGN I AA +S GT + + + GT+M
Sbjct: 309 ITDFSSRGPTADNR-------LKPEVVAPGNWIIAARAS-GTSMGQPINDYYTAAPGTAM 360
Query: 634 AAPHIAGLAALIKQ 647
A PH+AG+AAL+ Q
Sbjct: 361 ATPHVAGIAALLLQ 374
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKAL----YKSFGGF 318
+P+D +GHG+H AS+AAG G GMAP + + K L S
Sbjct: 173 TPYDDNGHGTHVASIAAGTG-------AASNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 319 XXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNT 378
+LS+ ++ G + + A+ +A AG+ VV AAGN+
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSDGT----DSLSQAVNNAWDAGLVVVVAAGNS 281
Query: 379 GPSPKSMSS--FSPWIFTVGAASHDRIYTN 406
GP+ ++ S + + TVGA + T+
Sbjct: 282 GPNKYTVGSPAAASKVITVGAVDKYDVITD 311
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GTSMA PH+AG+AAL+KQK
Sbjct: 203 YPGSTYASLNGTSMATPHVAGVAALVKQK 231
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 567 FSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEF--QGES 624
++++ + +S+RGP + +KP+++APG I +A SSL DS +
Sbjct: 195 YADNINHVAQFSSRGPTKDGR-------IKPDVMAPGTFILSARSSLAPDSSFWANHDSK 247
Query: 625 FAMMSGTSMAAPHIAGLAALIKQ 647
+A M GTSMA P +AG A +++
Sbjct: 248 YAYMGGTSMATPIVAGNVAQLRE 270
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GTSMA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALVKQK 231
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GTSMA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALVKQK 231
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GTSMA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALVKQK 231
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GTSMA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALVKQK 231
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA N+ I V+ G+AP + + K L G
Sbjct: 58 DGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAVKVLGADGRGAISSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS 384
+LS+ P AT ++ A+ SA G+ VV A+GN+G S S
Sbjct: 108 GLEWAGNNGMHVANLSLG---SPSPSAT----LEQAVNSATSRGVLVVAASGNSGASSIS 160
Query: 385 MSSFSPWIFTVGAASHD 401
+ VGA +
Sbjct: 161 YPARYANAMAVGATDQN 177
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GTSMA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTSMATPHVAGAAALVKQK 231
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 15/79 (18%)
Query: 569 NSAPKIMYYSARG--PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA 626
N ++ YS+RG D + + DI + APG+S+++ W + G +
Sbjct: 198 NGTYRVADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTWYNGG----------YN 244
Query: 627 MMSGTSMAAPHIAGLAALI 645
+SGTSMA PH++GLAA I
Sbjct: 245 TISGTSMATPHVSGLAAKI 263
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 47/202 (23%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+ I +DTG++ +HP ++ E +DF
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVNN---------------VEQCKDF------------- 54
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+ T I NS D +GHG+H A G + G G+AP +
Sbjct: 55 ----TGATTPINNSCTDR------NGHGTHVA-------GTALADGGSDQAGIYGVAPDA 97
Query: 304 HIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLS 363
+ YK L S G+ + +I G + + I A+
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIIS--MSLGSSANNSLISSAVNY 155
Query: 364 AAKAGIFVVQAAGNTGPSPKSM 385
A G+ +V AAGN+G S ++
Sbjct: 156 AYSKGVLIVAAAGNSGYSQGTI 177
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 36/165 (21%)
Query: 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLN-PTPMKMPGIIIPSPDDSKILLQYYNSSLER 543
K AK A G++ Y D GF + P +MP I D +LL+
Sbjct: 303 KDKIANAKKAGAVGVLIY-DNQDKGFPIELPNVDQMPAAFISRKD--GLLLK-------- 351
Query: 544 DEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPG 603
+ +KK I F A +L + S K+ +S+ G D +I KP++ APG
Sbjct: 352 -DNSKKTITFNATPKVLP------TASDTKLSRFSSWG------LTADGNI-KPDIAAPG 397
Query: 604 NSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
I ++ ++ +A +SGTSM+AP +AG+ L++++
Sbjct: 398 QDILSSVAN----------NKYAKLSGTSMSAPLVAGIMGLLQKQ 432
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 607 WAAWSSLGTDSVE-FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
W + G D V G +A MSGTSMA+PH+AGLAAL+ +
Sbjct: 200 WVDVVAPGVDIVSTITGNRYAYMSGTSMASPHVAGLAALLASQ 242
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 87/251 (34%), Gaps = 63/251 (25%)
Query: 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247
G I IDTG+D THP + K+I F
Sbjct: 32 GQEIAVIDTGVDYTHPDL------------------------------DGKVIKGYDFV- 60
Query: 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAV 307
DY P D + HG+H A +AA T + G A GMAP + I
Sbjct: 61 ----------DNDY-DPMDLNNHGTHVAGIAAAE-------TNNATGIA-GMAPNTRILA 101
Query: 308 YKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKA 367
+AL ++ G +LS+ G ++ A+ A
Sbjct: 102 VRALDRNGSGTLSDIADAIIYAADSGAEVINLSL-------GCDCHTTTLENAVNYAWNK 154
Query: 368 GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS-HDRIYTNSIILGNSLTISGVGLAPGTD 426
G VV AAGN G S + + VGA +DR+ + N T V +APG D
Sbjct: 155 GSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLAS----FSNYGTWVDV-VAPGVD 209
Query: 427 KMYTLISALHA 437
+ T+ +A
Sbjct: 210 IVSTITGNRYA 220
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GT MA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALVKQK 231
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GT MA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALVKQK 231
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 266 DGDGHGSHTA-SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXX 324
DG+GHG+H A ++AA ++ I V+ G+AP + + K L S G
Sbjct: 58 DGNGHGTHVAGTIAALDNSIGVL----------GVAPSAELYAVKVLGASGSGAISSIAQ 107
Query: 325 XXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTG 379
+LS+ P AT ++ A+ SA G+ VV A+GN+G
Sbjct: 108 GLEWAGNNGMHVANLSL---GSPSPSAT----LEQAVNSATSRGVLVVAASGNSG 155
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GT MA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALVKQK 231
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+ G ++A ++GT MA PH+AG AAL+KQK
Sbjct: 203 YPGSTYASLNGTXMATPHVAGAAALVKQK 231
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 569 NSAPKIMYYSARG--PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFA 626
N ++ YS+RG D + + DI + APG+S+++ W + G +
Sbjct: 198 NGTYRVADYSSRGYISTAGDYVIQEGDI---EISAPGSSVYSTWYNGG----------YN 244
Query: 627 MMSGTSMAAPHIAGLAALI 645
+SGT MA PH++GLAA I
Sbjct: 245 TISGTXMATPHVSGLAAKI 263
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 71/202 (35%), Gaps = 47/202 (23%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
T G G+ I +DTG++ +HP ++ E +DF
Sbjct: 23 TGGSGINIAVLDTGVNTSHPDLVNN---------------VEQCKDF------------- 54
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+ T I NS D +GHG+H A G + G G+AP +
Sbjct: 55 ----TGATTPINNSCTDR------NGHGTHVA-------GTALADGGSDQAGIYGVAPDA 97
Query: 304 HIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPNRRPPGIATFFNPIDMALLS 363
+ YK L S G+ + +I G + + I A+
Sbjct: 98 DLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTII--SMSLGSSANNSLISSAVNY 155
Query: 364 AAKAGIFVVQAAGNTGPSPKSM 385
A G+ +V AAGN+G S ++
Sbjct: 156 AYSKGVLIVAAAGNSGYSQGTI 177
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+L APG+ I +AW G + +SGTSMA PH+AG+AAL Q+
Sbjct: 196 DLFAPGSQIKSAWYDGG----------YKTISGTSMATPHVAGVAALYLQE 236
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SIW+ G + SGT MA+PH+AG AALI K
Sbjct: 185 DVMAPGVSIWS----------TLPGNKYGAKSGTXMASPHVAGAAALILSK 225
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 567 FSNSAPKIMYYSARGPD--PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES 624
N ++ +S+RG D + D+ + APG ++++ W F G
Sbjct: 195 IQNGTYRVADFSSRGHKRTAGDYVIQKGDV---EISAPGAAVYSTW---------FDG-G 241
Query: 625 FAMMSGTSMAAPHIAGLAALI 645
+A +SGTSMA+PH AGLAA I
Sbjct: 242 YATISGTSMASPHAAGLAAKI 262
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 70/204 (34%), Gaps = 52/204 (25%)
Query: 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGAR 243
+ G G+ I +DTG++ HP +++ E +DF G+
Sbjct: 23 SGGAGINIAVLDTGVNTNHPDLSNN---------------VEQCKDFTVGT--------- 58
Query: 244 HFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRS 303
+F ++ T D GHG+H A A N G V G+AP +
Sbjct: 59 NFTDNSCT--------------DRQGHGTHVAGSALANGGTGSGVY--------GVAPEA 96
Query: 304 HIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSI--TPNRRPPGIATFFNPIDMAL 361
+ YK L G+ + + + N +D A
Sbjct: 97 DLWAYKVLGDDGSGYADDIAEAIRHAGDQATALNTKVVINMSLGSSGESSLITNAVDYAY 156
Query: 362 LSAAKAGIFVVQAAGNTGPSPKSM 385
G+ ++ AAGN+GP P S+
Sbjct: 157 ----DKGVLIIAAAGNSGPKPGSI 176
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 567 FSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEF--QGES 624
++++ + +S+RGP + +KP+++APG I +A SSL DS +
Sbjct: 195 YADNINHVAQFSSRGPTKDGR-------IKPDVMAPGTFILSARSSLAPDSSFWANHDSK 247
Query: 625 FAMMSGTSMAAPHIAGLAALIKQ 647
+A GTS A P +AG A +++
Sbjct: 248 YAYXGGTSXATPIVAGNVAQLRE 270
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 6/122 (4%)
Query: 84 LNNPRNVSISHPRSGYNISRVHDSILRRAFKGEKYLKLYSYHYLINGFSVFVTPQQAEKL 143
L P+ +S +G + + +D I A KG +Y++ LI V P
Sbjct: 57 LELPQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIK--PTVVKPNPDMYK 114
Query: 144 SRRREVANVVSDFSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHP 203
R+ + + D+ + + GL Q+ E +G +++ +DTG+D THP
Sbjct: 115 IRKPGLNSTARDYGEELSN----ELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHP 170
Query: 204 SF 205
Sbjct: 171 DL 172
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 12/58 (20%)
Query: 601 APGNSIWAAWSSLGTDSVEFQGE----------SFAMMSGTSMAAPHIAGLAALIKQK 648
APG +I + + G DS+ ++G ++ GTSMAAPH+ G+ A++ QK
Sbjct: 342 APGVTILS--TVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 583 DPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642
D SF + ++ ++ PG SI + W G S +SGTSMA PH+AGLA
Sbjct: 187 DRRSSFSNYGSVL--DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLA 234
Query: 643 ALI 645
A +
Sbjct: 235 AYL 237
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF 205
E+AG+G + IDTGI+ +HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEF 49
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 9/53 (16%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQG---ESFAMMSGTSMAAPHIAGLAALI 645
+ +L APG +I L T V G S+ M +GTSMAAPH++G+AAL+
Sbjct: 244 RVHLAAPGTNI------LSTIDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALV 290
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 583 DPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642
D SF + ++ ++ PG SI + W G S +SGTSMA PH+AGLA
Sbjct: 187 DRRSSFSNYGSVL--DIFGPGTSILSTW----------IGGSTRSISGTSMATPHVAGLA 234
Query: 643 ALI 645
A +
Sbjct: 235 AYL 237
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF 205
E+AG+G + IDTGI+ +HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEF 49
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQG---ESFAMMSGTSMAAPHIAGLAALI 645
L APG +I L T V G S+ M +GTSMAAPH++G+AAL+
Sbjct: 247 LAAPGTNI------LSTIDVGQAGPVRSSYGMKAGTSMAAPHVSGVAALV 290
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG S+++ + S ++ ++GTSMA+PH+AG AALI K
Sbjct: 197 VMAPGVSVYSTYPS----------NTYTSLNGTSMASPHVAGAAALILSK 236
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 77/217 (35%), Gaps = 64/217 (29%)
Query: 166 PQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICE 225
P + L + +Q GY+ G V +G IDTGI +H
Sbjct: 5 PYGIPLIKADKVQAQGYK--GANVKVGIIDTGIASSH----------------------- 39
Query: 226 VTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA-SVAAGNHGI 284
+ K++G F S + Y + DG+GHG+H A +VAA ++
Sbjct: 40 ---------TDLKVVGGASFV----------SGESYNT--DGNGHGTHVAGTVAALDNTT 78
Query: 285 PVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFXXXXXXXXXXXXXXXXXXXSLSITPN 344
V+ G+AP + K L S G ++S+
Sbjct: 79 GVL----------GVAPNVSLYAIKVLNSSGSGSYSAIVSGIEWATQNGLDVINMSL--- 125
Query: 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPS 381
P G +D A S GI VV AAGN+G S
Sbjct: 126 GGPSGSTALKQAVDKAYAS----GIVVVAAAGNSGNS 158
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
+L APG I S++ + + ++++ M+GTSMA PH++G+AAL+
Sbjct: 245 DLAAPGQDIL---STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALV 289
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
+L APG I S++ + + ++++ M+GTSMA PH++G+AAL+
Sbjct: 245 DLAAPGQDIL---STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALV 289
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
+L APG I S++ + + ++++ M+GTSMA PH++G+AAL+
Sbjct: 245 DLAAPGQDIL---STVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALV 289
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GTSMA+PH+AG AALI K
Sbjct: 197 VMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSK 236
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GTSMA+PH+AG AALI K
Sbjct: 197 VMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSK 236
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GTSMA+PH+AG AALI K
Sbjct: 197 VMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSK 236
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GTSMA+PH+AG AALI K
Sbjct: 197 VMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSK 236
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GTSMA+PH+AG AALI K
Sbjct: 198 VMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSK 237
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GTSMA+PH+AG AALI K
Sbjct: 198 VMAPGAGVYSTYPT----------NTYATLNGTSMASPHVAGAAALILSK 237
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++ APG+SI++ + ++A +SGTSMA PH+AG+A L+ +
Sbjct: 201 DVAAPGSSIYS----------TYPTSTYASLSGTSMATPHVAGVAGLLASQ 241
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 59/162 (36%), Gaps = 59/162 (36%)
Query: 156 FSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
FS R + PQ + PQ I EG G I +DTG+ HP A
Sbjct: 8 FSSRQ---YGPQKIQAPQAWDIAEG------SGAKIAIVDTGVQSNHPDLAG-------- 50
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
K++G F + N S +P +G+GHG+H A
Sbjct: 51 ----------------------KVVGGWDF--------VDNDS----TPQNGNGHGTHCA 76
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG 317
+AA VT + G A G AP++ I + L S G
Sbjct: 77 GIAA-------AVTNNSTGIA-GTAPKASILAVRVLDNSGSG 110
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 574 IMYYSARGPDPEDSFLDDA--DIMKPNLVAPGNSIWAAWSSLG-TDSVEFQG-ESFAMMS 629
I+Y ++ P ++ FL DA DI P++ + A + LG + +V QG + + +
Sbjct: 307 IVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYN 366
Query: 630 GTSMAAPHIAGLAALI 645
GTSMA PH++G+A L+
Sbjct: 367 GTSMATPHVSGVATLV 382
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
++ APG SI + W T+++ SGTSMA PHIAGLAA +
Sbjct: 201 DIFAPGTSITSTWIGGRTNTI----------SGTSMATPHIAGLAAYL 238
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 182 YET-AGEGVVIGFIDTGIDPTHPSFADDASE 211
Y+T AG G + IDTG++ THP F A +
Sbjct: 26 YDTSAGAGACVYVIDTGVEDTHPDFEGRAKQ 56
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 36.2 bits (82), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 8/51 (15%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+L APG SI +AW + T + ++GTSMA PH+AG+AAL ++
Sbjct: 196 DLFAPGASIPSAWYTSDT--------ATQTLNGTSMATPHVAGVAALYLEQ 238
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 8/47 (17%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644
++ APG+SI ++W + + +SGTSMA+PH+AG+AAL
Sbjct: 198 DIYAPGSSITSSWYT--------SNSATNTISGTSMASPHVAGVAAL 236
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +SGTSMA+PH+AG AALI K
Sbjct: 188 DVMAPGVSICS----------TLPGGKYGALSGTSMASPHVAGAAALILSK 228
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSICS----------TLPGNKYGAKSGTSMASPHVAGAAALILSK 237
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 188 DVMAPGVSICS----------TLPGNKYGAKSGTSMASPHVAGAAALILSK 228
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 188 DVMAPGVSICS----------TLPGNKYGAKSGTSMASPHVAGAAALILSK 228
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAKSGTSMASPHVAGAAALILSK 237
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSICS----------TLPGNKYGAKSGTSMASPHVAGAAALILSK 237
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIXS----------TLPGNKYGAYSGTSMASPHVAGAAALILSK 237
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIXS----------TLPGNKYGAYSGTSMASPHVAGAAALILSK 237
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 583 DPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642
D SF + ++ ++ PG I + W G S +SGTSMA PH+AGLA
Sbjct: 187 DRRSSFSNYGSVL--DIFGPGTDILSTW----------IGGSTRSISGTSMATPHVAGLA 234
Query: 643 ALI 645
A +
Sbjct: 235 AYL 237
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 183 ETAGEGVVIGFIDTGIDPTHPSF 205
E+AG+G + IDTGI+ +HP F
Sbjct: 27 ESAGQGSCVYVIDTGIEASHPEF 49
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 10/50 (20%)
Query: 599 LVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
++APG +++ + + ++A ++GT MA+PH+AG AALI K
Sbjct: 197 VMAPGAGVYSTYPT----------NTYATLNGTXMASPHVAGAAALILSK 236
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
++VAPG I + + G +A +SGT+MAAPH+AG ALI
Sbjct: 226 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
++VAPG I + + G +A +SGT+MAAPH+AG ALI
Sbjct: 226 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
++VAPG I + + G +A +SGT+MAAPH+AG ALI
Sbjct: 226 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 263
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 583 DPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642
D SF + +++ ++ APG++I + W T+++ SGTSMA PHI GL
Sbjct: 190 DARSSFSNYGNLV--DIFAPGSNILSTWIGGTTNTI----------SGTSMATPHIVGLG 237
Query: 643 ALI 645
A +
Sbjct: 238 AYL 240
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +SGT+MA+PH+AG AALI K
Sbjct: 188 DVMAPGVSICS----------TLPGGKYGALSGTAMASPHVAGAAALILSK 228
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALI 645
++VAPG I + + G +A +SGT+MAAPH+AG ALI
Sbjct: 208 DIVAPGVGIKSTYLDSG----------YAELSGTAMAAPHVAGALALI 245
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 10/54 (18%)
Query: 595 MKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+KP++ APG I ++ ++ +A +SGTS +AP +AG+ L++++
Sbjct: 380 IKPDIAAPGQDILSSVAN----------NKYAKLSGTSXSAPLVAGIXGLLQKQ 423
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTSMASPHVAGAAALILSK 237
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 623 ESFAMMSGTSMAAPHIAGLAALIKQK 648
++A +SGTSMA PH+AG+A L+ +
Sbjct: 216 STYASLSGTSMATPHVAGVAGLLASQ 241
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 59/162 (36%), Gaps = 59/162 (36%)
Query: 156 FSVRTATTHTPQFLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYP 215
FS R + PQ + PQ I EG G I +DTG+ HP A
Sbjct: 8 FSSRQ---YGPQKIQAPQAWDIAEG------SGAKIAIVDTGVQSNHPDLAG-------- 50
Query: 216 VPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTA 275
K++G F + N S +P +G+GHG+H A
Sbjct: 51 ----------------------KVVGGWDF--------VDNDS----TPQNGNGHGTHCA 76
Query: 276 SVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG 317
+AA VT + G A G AP++ I + L S G
Sbjct: 77 GIAA-------AVTNNSTGIA-GTAPKASILAVRVLDNSGSG 110
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTSMASPHVAGAAALILSK 237
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTSMASPHVAGAAALILSK 237
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 622 GESFAMMSGTSMAAPHIAGLAALIKQK 648
G + SGT+MA+PH+AG AALI K
Sbjct: 202 GNKYGAKSGTAMASPHVAGAAALILSK 228
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTSMASPHVAGAAALILSK 237
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GTSMA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTSMASPHVAGAAALILSK 237
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 620 FQGESFAMMSGTSMAAPHIAGLAALIKQK 648
G + SGT+MA+PH+AG AALI K
Sbjct: 200 LPGNKYGAKSGTAMASPHVAGAAALILSK 228
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGT MA+PH+AG AALI K
Sbjct: 188 DVMAPGVSICS----------TLPGNKYGAKSGTXMASPHVAGAAALILSK 228
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGT MA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAKSGTXMASPHVAGAAALILSK 237
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGT MA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYSGTXMASPHVAGAAALILSK 237
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + SGT MA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYSGTXMASPHVAGAAALILSK 237
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G ++ +GTSMA PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGGTYGAYNGTSMATPHVAGAAALILSK 237
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 218 QPEVSAPGVDILST----------YPDDSYETLMGTAMATPHVSGVVALIQ 258
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 220 QPEVSAPGVDILST----------YPDDSYETLMGTAMATPHVSGVVALIQ 260
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GT MA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTXMASPHVAGAAALILSK 237
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 295 QPEVSAPGVDILSTYPD----------DSYETLMGTAMATPHVSGVVALIQ 335
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GT MA+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTXMASPHVAGAAALILSK 237
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPD----------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPD----------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPD----------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 298 QPEVSAPGVDILSTYPD----------DSYETLMGTAMATPHVSGVVALIQ 338
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 229 QPEVSAPGVDILST----------YPDDSYETLMGTAMATPHVSGVVALIQ 269
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT+MA PH++G+ ALI+
Sbjct: 229 QPEVSAPGVDILST----------YPDDSYETLMGTAMATPHVSGVVALIQ 269
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G ++ +GT MA PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGGTYGAYNGTXMATPHVAGAAALILSK 237
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT MA PH++G+ ALI+
Sbjct: 218 QPEVSAPGVDILST----------YPDDSYETLMGTCMATPHVSGVVALIQ 258
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 596 KPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646
+P + APG I + + +S+ + GT MA PH++G+ ALI+
Sbjct: 218 QPEVSAPGVDILST----------YPDDSYETLMGTXMATPHVSGVVALIQ 258
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G ++ +GT MA PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGGTYGAYNGTCMATPHVAGAAALILSK 237
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 598 NLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648
+++APG SI + G + +GTS A+PH+AG AALI K
Sbjct: 197 DVMAPGVSIQS----------TLPGNKYGAYNGTSXASPHVAGAAALILSK 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,160,054
Number of Sequences: 62578
Number of extensions: 1049573
Number of successful extensions: 2578
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 325
length of query: 858
length of database: 14,973,337
effective HSP length: 107
effective length of query: 751
effective length of database: 8,277,491
effective search space: 6216395741
effective search space used: 6216395741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)