Query 003005
Match_columns 858
No_of_seqs 401 out of 3048
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 15:08:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003005.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003005hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.4E-50 3.1E-55 442.1 29.5 306 158-666 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 2.9E-50 6.2E-55 455.1 22.2 285 183-712 312-617 (639)
3 cd07497 Peptidases_S8_14 Pepti 100.0 2.3E-48 5E-53 420.6 24.5 291 186-665 1-311 (311)
4 cd05562 Peptidases_S53_like Pe 100.0 3E-48 6.5E-53 413.7 22.3 271 183-708 1-274 (275)
5 cd07479 Peptidases_S8_SKI-1_li 100.0 5.2E-48 1.1E-52 409.1 23.5 245 183-669 4-254 (255)
6 cd07478 Peptidases_S8_CspA-lik 100.0 1.7E-47 3.7E-52 434.4 28.1 409 184-699 1-455 (455)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 7.7E-47 1.7E-51 420.4 26.9 315 175-708 2-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 3.4E-46 7.3E-51 408.8 26.0 297 175-715 5-305 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.4E-45 3.1E-50 392.1 23.6 250 175-672 2-256 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 1E-44 2.2E-49 394.6 27.2 289 186-706 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 4.2E-45 9.1E-50 383.3 22.7 227 189-672 1-231 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 5.3E-45 1.1E-49 394.0 24.0 269 187-666 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.7E-44 3.7E-49 385.2 24.2 247 188-666 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 4.4E-44 9.6E-49 382.6 23.9 247 186-666 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 3.9E-43 8.5E-48 386.2 26.3 221 265-668 182-412 (412)
16 cd07487 Peptidases_S8_1 Peptid 100.0 5.6E-43 1.2E-47 374.7 25.6 258 186-666 1-264 (264)
17 cd07485 Peptidases_S8_Fervidol 100.0 3.3E-42 7.1E-47 370.0 24.3 263 175-664 2-273 (273)
18 cd07494 Peptidases_S8_10 Pepti 100.0 5.5E-42 1.2E-46 370.2 25.2 162 168-400 7-174 (298)
19 cd04847 Peptidases_S8_Subtilis 100.0 1.5E-42 3.2E-47 376.2 20.6 263 189-666 1-291 (291)
20 cd04077 Peptidases_S8_PCSK9_Pr 100.0 9.2E-42 2E-46 363.1 22.4 229 183-667 21-255 (255)
21 cd07490 Peptidases_S8_6 Peptid 100.0 1.6E-41 3.6E-46 361.2 23.0 253 188-666 1-254 (254)
22 cd07496 Peptidases_S8_13 Pepti 100.0 1.9E-41 4.2E-46 366.3 23.9 269 188-664 1-285 (285)
23 cd07484 Peptidases_S8_Thermita 100.0 1.8E-41 4E-46 362.0 23.0 244 169-668 16-259 (260)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 4.4E-41 9.6E-46 365.7 24.2 278 182-666 2-293 (293)
25 KOG1153 Subtilisin-related pro 100.0 8.5E-42 1.9E-46 359.4 17.8 293 119-667 136-462 (501)
26 cd07480 Peptidases_S8_12 Pepti 100.0 2.7E-41 5.9E-46 367.0 22.0 148 183-382 4-172 (297)
27 cd04843 Peptidases_S8_11 Pepti 100.0 2.7E-41 5.9E-46 360.6 21.3 251 170-666 3-277 (277)
28 cd07498 Peptidases_S8_15 Pepti 100.0 6.7E-41 1.5E-45 353.8 21.6 241 189-664 1-242 (242)
29 cd07473 Peptidases_S8_Subtilis 100.0 5.3E-40 1.1E-44 350.7 24.8 253 187-666 2-259 (259)
30 cd07491 Peptidases_S8_7 Peptid 100.0 2.4E-40 5.2E-45 347.7 18.9 160 186-399 2-170 (247)
31 cd07477 Peptidases_S8_Subtilis 100.0 9.7E-40 2.1E-44 342.1 23.0 227 188-664 1-229 (229)
32 cd07482 Peptidases_S8_Lantibio 100.0 7.4E-40 1.6E-44 356.3 21.4 155 188-382 1-159 (294)
33 PF00082 Peptidase_S8: Subtila 100.0 3.8E-40 8.2E-45 356.3 13.4 276 190-708 1-282 (282)
34 cd07492 Peptidases_S8_8 Peptid 100.0 6.7E-39 1.5E-43 333.8 21.7 151 188-399 1-151 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 5.3E-39 1.2E-43 349.9 18.3 249 175-666 31-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 6.4E-38 1.4E-42 336.0 21.9 247 185-666 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.5E-36 3.3E-41 327.0 21.4 287 180-729 194-492 (1033)
38 KOG1114 Tripeptidyl peptidase 100.0 2.6E-35 5.5E-40 330.9 25.2 368 267-855 309-695 (1304)
39 cd07488 Peptidases_S8_2 Peptid 100.0 1.2E-32 2.7E-37 288.3 16.0 119 264-401 33-161 (247)
40 cd00306 Peptidases_S8_S53 Pept 100.0 1.8E-30 3.9E-35 272.9 21.9 123 264-400 40-167 (241)
41 COG1404 AprE Subtilisin-like s 99.9 6.5E-23 1.4E-27 239.4 23.4 248 183-667 138-398 (508)
42 KOG3526 Subtilisin-like propro 99.9 2E-22 4.3E-27 207.4 12.4 154 175-381 153-316 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 5.5E-17 1.2E-21 180.6 13.7 103 295-402 82-198 (361)
44 PF06280 DUF1034: Fn3-like dom 99.2 1.3E-10 2.9E-15 106.9 12.8 87 759-845 1-112 (112)
45 cd02133 PA_C5a_like PA_C5a_lik 98.7 1.5E-07 3.2E-12 90.7 11.5 102 458-583 40-141 (143)
46 PF05922 Inhibitor_I9: Peptida 98.5 4.4E-07 9.6E-12 78.4 8.9 46 115-160 36-81 (82)
47 cd02120 PA_subtilisin_like PA_ 98.4 3.4E-06 7.3E-11 79.4 13.3 117 408-540 2-119 (126)
48 KOG3525 Subtilisin-like propro 98.4 1.8E-06 3.9E-11 97.4 11.6 158 175-382 25-188 (431)
49 COG4934 Predicted protease [Po 98.3 6.9E-06 1.5E-10 99.5 15.1 99 295-397 287-395 (1174)
50 cd02129 PA_hSPPL_like PA_hSPPL 97.9 5.9E-05 1.3E-09 69.4 9.8 82 450-539 30-114 (120)
51 PF02225 PA: PA domain; Inter 97.9 4.2E-05 9E-10 68.8 8.5 75 456-537 24-101 (101)
52 cd04816 PA_SaNapH_like PA_SaNa 97.8 0.00032 6.9E-09 65.6 12.2 83 450-540 29-115 (122)
53 cd02127 PA_hPAP21_like PA_hPAP 97.8 0.00014 2.9E-09 67.4 9.3 82 450-540 21-109 (118)
54 cd04817 PA_VapT_like PA_VapT_l 97.7 0.00013 2.8E-09 69.1 8.5 74 459-539 50-133 (139)
55 cd02122 PA_GRAIL_like PA _GRAI 97.7 0.00027 5.9E-09 67.2 10.6 85 449-540 43-131 (138)
56 cd04813 PA_1 PA_1: Protease-as 97.7 0.00018 3.8E-09 66.5 8.9 82 449-540 26-112 (117)
57 cd02126 PA_EDEM3_like PA_EDEM3 97.6 0.00025 5.4E-09 66.6 8.9 83 450-541 27-120 (126)
58 cd02124 PA_PoS1_like PA_PoS1_l 97.6 0.00034 7.5E-09 65.8 9.6 82 450-540 41-122 (129)
59 cd02125 PA_VSR PA_VSR: Proteas 97.6 0.00041 9E-09 65.1 9.6 85 450-541 22-121 (127)
60 cd04818 PA_subtilisin_1 PA_sub 97.5 0.00047 1E-08 64.1 9.5 83 449-540 26-111 (118)
61 cd02132 PA_GO-like PA_GO-like: 97.5 0.00052 1.1E-08 65.6 9.3 80 450-540 48-132 (139)
62 cd00538 PA PA: Protease-associ 97.5 0.00057 1.2E-08 64.0 9.4 85 449-540 29-119 (126)
63 cd02123 PA_C_RZF_like PA_C-RZF 97.4 0.00063 1.4E-08 66.1 9.1 84 450-540 50-140 (153)
64 cd02130 PA_ScAPY_like PA_ScAPY 97.4 0.00094 2E-08 62.4 9.3 81 451-540 32-115 (122)
65 cd04819 PA_2 PA_2: Protease-as 97.1 0.0068 1.5E-07 57.0 12.1 75 459-540 38-120 (127)
66 PF14874 PapD-like: Flagellar- 96.3 0.13 2.8E-06 46.2 13.6 87 759-847 11-100 (102)
67 PF10633 NPCBM_assoc: NPCBM-as 95.0 0.088 1.9E-06 44.8 7.0 56 767-822 6-64 (78)
68 cd04815 PA_M28_2 PA_M28_2: Pro 94.8 0.11 2.4E-06 49.3 7.8 81 459-540 33-127 (134)
69 PF06030 DUF916: Bacterial pro 94.5 0.6 1.3E-05 43.4 11.7 67 766-833 27-119 (121)
70 cd04814 PA_M28_1 PA_M28_1: Pro 94.1 0.18 4E-06 48.0 7.5 70 426-506 19-100 (142)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 93.9 0.32 7E-06 46.9 8.9 51 457-507 39-101 (151)
72 PF11614 FixG_C: IG-like fold 93.8 0.28 6.1E-06 45.4 8.2 55 768-822 33-88 (118)
73 cd04820 PA_M28_1_1 PA_M28_1_1: 93.5 0.42 9.1E-06 45.3 8.6 50 457-506 41-96 (137)
74 cd02128 PA_TfR PA_TfR: Proteas 93.3 0.11 2.5E-06 51.5 4.9 39 462-506 52-90 (183)
75 PF07718 Coatamer_beta_C: Coat 91.8 1.3 2.8E-05 41.8 9.3 64 771-834 74-139 (140)
76 KOG2442 Uncharacterized conser 91.6 0.48 1E-05 52.9 7.2 68 461-535 91-163 (541)
77 COG1470 Predicted membrane pro 89.9 2 4.4E-05 48.0 10.1 69 767-835 398-470 (513)
78 cd02131 PA_hNAALADL2_like PA_h 89.3 0.54 1.2E-05 44.9 4.6 39 462-506 37-75 (153)
79 cd02121 PA_GCPII_like PA_GCPII 87.9 0.84 1.8E-05 47.0 5.3 41 461-507 67-107 (220)
80 TIGR02745 ccoG_rdxA_fixG cytoc 83.1 4 8.6E-05 46.6 8.2 54 768-821 348-402 (434)
81 COG1470 Predicted membrane pro 82.0 16 0.00035 41.2 12.0 55 767-821 285-346 (513)
82 PF00345 PapD_N: Pili and flag 79.6 17 0.00036 33.6 9.9 66 768-834 16-90 (122)
83 PF05506 DUF756: Domain of unk 79.3 23 0.0005 30.8 10.0 60 767-835 19-79 (89)
84 KOG4628 Predicted E3 ubiquitin 78.6 5.2 0.00011 43.8 6.8 80 451-537 63-147 (348)
85 smart00635 BID_2 Bacterial Ig- 75.5 12 0.00026 31.9 7.0 45 794-841 4-48 (81)
86 PF07705 CARDB: CARDB; InterP 72.1 24 0.00052 30.8 8.5 51 766-819 19-72 (101)
87 cd04821 PA_M28_1_2 PA_M28_1_2: 70.6 6.4 0.00014 38.4 4.6 49 458-506 42-103 (157)
88 PF00635 Motile_Sperm: MSP (Ma 64.8 28 0.0006 31.2 7.4 51 768-820 20-71 (109)
89 PF07610 DUF1573: Protein of u 58.6 30 0.00065 25.9 5.3 43 772-816 2-45 (45)
90 PF07233 DUF1425: Protein of u 55.7 60 0.0013 28.6 7.6 52 764-815 22-79 (94)
91 PF12690 BsuPI: Intracellular 53.9 83 0.0018 27.0 7.9 21 800-820 52-72 (82)
92 PF02368 Big_2: Bacterial Ig-l 51.2 15 0.00032 31.1 2.9 45 794-842 4-48 (79)
93 PRK15098 beta-D-glucoside gluc 49.6 38 0.00082 42.0 7.2 52 767-820 668-729 (765)
94 PRK15308 putative fimbrial pro 49.3 1.3E+02 0.0028 31.4 10.0 62 770-833 35-113 (234)
95 PF14016 DUF4232: Protein of u 47.7 90 0.0019 29.2 8.0 79 767-846 19-114 (131)
96 PLN03080 Probable beta-xylosid 46.8 60 0.0013 40.3 8.3 76 768-843 686-778 (779)
97 KOG3920 Uncharacterized conser 45.7 20 0.00043 34.3 3.0 51 449-507 73-123 (193)
98 PF00927 Transglut_C: Transglu 45.6 80 0.0017 28.3 7.0 55 767-821 16-79 (107)
99 PF13598 DUF4139: Domain of un 43.2 86 0.0019 34.2 8.2 52 768-819 244-314 (317)
100 KOG1058 Vesicle coat complex C 41.8 57 0.0012 39.2 6.5 51 785-835 755-805 (948)
101 cd09030 DUF1425 Putative perip 38.0 1.1E+02 0.0023 27.3 6.5 50 766-815 32-87 (101)
102 PF08260 Kinin: Insect kinin p 36.5 15 0.00033 17.0 0.4 6 576-581 3-8 (8)
103 PF02845 CUE: CUE domain; Int 31.9 44 0.00095 24.5 2.5 24 642-665 5-28 (42)
104 PRK15019 CsdA-binding activato 29.3 53 0.0011 31.6 3.2 33 626-659 77-109 (147)
105 TIGR03391 FeS_syn_CsdE cystein 27.8 59 0.0013 31.0 3.2 34 626-660 72-105 (138)
106 PF14310 Fn3-like: Fibronectin 27.0 74 0.0016 26.2 3.3 21 800-820 25-45 (71)
107 PF11797 DUF3324: Protein of u 26.7 5.3E+02 0.012 24.4 9.6 82 754-835 30-117 (140)
108 PF05753 TRAP_beta: Translocon 25.2 5.4E+02 0.012 25.7 9.6 54 767-820 39-99 (181)
109 PRK09296 cysteine desufuration 25.0 71 0.0015 30.4 3.2 33 626-659 67-99 (138)
110 PF11611 DUF4352: Domain of un 24.6 4E+02 0.0087 24.0 8.3 57 768-824 38-107 (123)
111 PF13620 CarboxypepD_reg: Carb 23.4 3.3E+02 0.0072 22.5 6.9 42 773-817 41-82 (82)
112 TIGR02231 conserved hypothetic 22.5 3.3E+02 0.0072 32.2 8.9 21 801-821 499-519 (525)
113 COG5633 Predicted periplasmic 22.4 2.8E+02 0.0062 25.4 6.1 44 772-815 60-108 (123)
114 PF02657 SufE: Fe-S metabolism 22.3 91 0.002 29.1 3.3 33 627-660 59-91 (125)
115 PF13940 Ldr_toxin: Toxin Ldr, 21.4 79 0.0017 22.0 1.9 13 633-645 14-26 (35)
116 PF04255 DUF433: Protein of un 21.3 85 0.0018 24.7 2.5 38 625-662 11-54 (56)
117 COG2166 sufE Cysteine desulfur 21.2 88 0.0019 29.9 2.9 32 627-659 73-104 (144)
118 smart00546 CUE Domain that may 20.3 1.4E+02 0.0031 21.8 3.4 25 641-665 5-29 (43)
119 TIGR00192 urease_beta urease, 20.1 2.7E+02 0.0059 24.8 5.4 50 766-815 18-82 (101)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-50 Score=442.06 Aligned_cols=306 Identities=51% Similarity=0.816 Sum_probs=253.5
Q ss_pred ccccCCCCCcccCCCcccccc-cCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCC
Q 003005 158 VRTATTHTPQFLGLPQGAWIQ-EGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCN 236 (858)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~w~~-~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 236 (858)
++++.++++.+++++. .|.. .+..+++|+||+|||||||||++||+|.+... .++...|.+.|..+..+....++
T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 76 (307)
T cd04852 1 YQLHTTRSPDFLGLPG-AWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGG---GPYPHTWPGDCVTGEDFNPFSCN 76 (307)
T ss_pred CCccccCCHHHcCCCC-CCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCC---CCCCCCCCCcccCCCCcCccCcC
Confidence 3567788899999987 8876 55668999999999999999999999998765 66778899999988888778899
Q ss_pred ceeeeeeecchhhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC
Q 003005 237 RKLIGARHFAASAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG 316 (858)
Q Consensus 237 ~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~ 316 (858)
+|+++.++|.++.......+...+...+.|..||||||||||||+........|...+.+.||||+|+|+.+|+++....
T Consensus 77 ~ki~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~ 156 (307)
T cd04852 77 NKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG 156 (307)
T ss_pred CeEEEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCC
Confidence 99999999987643322222334456678899999999999999876544444555567889999999999999987566
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEe
Q 003005 317 GFAADVVAAIDQAAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVG 396 (858)
Q Consensus 317 ~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVg 396 (858)
+..+++++++++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|......++..|++|+||
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~----~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSP----DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCC----CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 888999999999999999999999998643 2245788888889999999999999999987777788888899888
Q ss_pred ecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccc
Q 003005 397 AASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIR 476 (858)
Q Consensus 397 A~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~ 476 (858)
|++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 631
Q ss_pred cccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeee
Q 003005 477 FVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAV 556 (858)
Q Consensus 477 ~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 556 (858)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhH
Q 003005 557 ACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (858)
Q Consensus 557 ~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 636 (858)
+||||+|||.+|++++............+.|..++|||||||
T Consensus 236 --------------------------------------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP 277 (307)
T cd04852 236 --------------------------------------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASP 277 (307)
T ss_pred --------------------------------------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHH
Confidence 356999999999999864322222224568999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 637 ~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
+|||++|||+|++|+|+|+|||++|++||+
T Consensus 278 ~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 278 HVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999995
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=2.9e-50 Score=455.11 Aligned_cols=285 Identities=22% Similarity=0.281 Sum_probs=208.8
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCcee--eeeeecchhhhhcCccCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKL--IGARHFAASAITRGIFNSSQD 260 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv--~g~~~~~~~~~~~~~~~~~~~ 260 (858)
+.+|+||+|||||||||++||||.++.+.+..... |.++.....|+.+ +.+++|.+ +
T Consensus 312 ~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~---------GrdgiDdD~nG~vdd~~G~nfVd------------~ 370 (639)
T PTZ00262 312 PHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELH---------GRKGIDDDNNGNVDDEYGANFVN------------N 370 (639)
T ss_pred ccCCCCcEEEEEccCCCCCChhhhhhccccccccc---------CccccccccCCcccccccccccC------------C
Confidence 46899999999999999999999987541111100 1111111111111 22344443 2
Q ss_pred CCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEc
Q 003005 261 YASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLS 340 (858)
Q Consensus 261 ~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S 340 (858)
...|.|.+||||||||||||..+++ .++.||||+|+|+++|+++..+.+..++++.||+||++.|++|||||
T Consensus 371 ~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmS 442 (639)
T PTZ00262 371 DGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGS 442 (639)
T ss_pred CCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEec
Confidence 3456889999999999999975332 34679999999999999987556889999999999999999999999
Q ss_pred cCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC--------------CCC----CCCceEEEeecccCc
Q 003005 341 ITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--------------MSS----FSPWIFTVGAASHDR 402 (858)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~~p~vitVgA~~~~~ 402 (858)
||+.. +...+..|+++|.++|++||+||||++..... +|+ ..++||+|||++.+.
T Consensus 443 lG~~~-------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~ 515 (639)
T PTZ00262 443 FSFDE-------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK 515 (639)
T ss_pred cccCC-------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC
Confidence 99642 33578899999999999999999999864321 221 134566666543210
Q ss_pred eeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcc
Q 003005 403 IYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS 482 (858)
Q Consensus 403 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~ 482 (858)
.
T Consensus 516 ~------------------------------------------------------------------------------- 516 (639)
T PTZ00262 516 N------------------------------------------------------------------------------- 516 (639)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecc
Q 003005 483 TIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGG 562 (858)
Q Consensus 483 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 562 (858)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHH
Q 003005 563 LKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLA 642 (858)
Q Consensus 563 ~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~a 642 (858)
..-.++.||++|. .++||+|||++|+|+. +++.|..++|||||||||||++
T Consensus 517 -------~~~s~s~~Snyg~------------~~VDIaAPG~dI~St~----------p~g~Y~~~SGTSmAAP~VAGvA 567 (639)
T PTZ00262 517 -------NQYSLSPNSFYSA------------KYCQLAAPGTNIYSTF----------PKNSYRKLNGTSMAAPHVAAIA 567 (639)
T ss_pred -------CcccccccccCCC------------CcceEEeCCCCeeecc----------CCCceeecCCCchhHHHHHHHH
Confidence 0001344566652 2349999999999998 4568999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccc-cccccccccCCCCee
Q 003005 643 ALIKQKFPSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMG-SGFVNATASLDPGLV 712 (858)
Q Consensus 643 ALl~q~~P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G-~G~vd~~~A~~~~~v 712 (858)
|||++++|+|+++||+++|++||.++.... ..+| +|+||+++|++..+.
T Consensus 568 ALLlS~~P~LT~~qV~~iL~~TA~~l~~~~---------------------n~~~wgG~LDa~kAV~~Ai~ 617 (639)
T PTZ00262 568 SLILSINPSLSYEEVIRILKESIVQLPSLK---------------------NKVKWGGYLDIHHAVNLAIA 617 (639)
T ss_pred HHHHhhCCCCCHHHHHHHHHHhCccCCCCC---------------------CccccCcEEcHHHHHHHHHh
Confidence 999999999999999999999998764321 1233 389999999986543
No 3
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-48 Score=420.58 Aligned_cols=291 Identities=27% Similarity=0.314 Sum_probs=192.3
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
|+||+|||||||||.+||||.++.. . .|...++ +.+++..+.++..+ ....+.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~---~----~~~~~~d---------~~~~~~~g~d~~~~-----------~~~~~~ 53 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN---F----SWKLKFD---------YKAYLLPGMDKWGG-----------FYVIMY 53 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC---C----CcccccC---------cCCCccCCcCCCCC-----------ccCCCC
Confidence 7999999999999999999986532 0 1110000 00112222222211 113457
Q ss_pred CCCCCcccchhhhccCCCCCcccccc-cccceeecCCcceeeeeehhcCCCCCCHHHHHH-------HHHHHH--HCCCC
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGH-HFGNASGMAPRSHIAVYKALYKSFGGFAADVVA-------AIDQAA--QDGVD 335 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~-~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~-------ai~~a~--~~g~~ 335 (858)
|.+||||||||||||+........++ ....+.||||+|+|+.+|++..........+.. +++|++ +++++
T Consensus 54 D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (311)
T cd07497 54 DFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVD 133 (311)
T ss_pred CccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCce
Confidence 89999999999999975321110000 113568999999999999996522232222222 444443 67999
Q ss_pred EEEEccCCCCCCCC-CCccCCHHHHHHHHH-HhCCCEEEEecCCCCCCC--CCCCCCCCceEEEeecccCceeeeEEEeC
Q 003005 336 IISLSITPNRRPPG-IATFFNPIDMALLSA-AKAGIFVVQAAGNTGPSP--KSMSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 336 VIN~S~G~~~~~~~-~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g~~~--~~~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
|||||||....... .....+....+++.+ .++|+++|+||||+|... ...|+.++++|+|||++.....+..
T Consensus 134 VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---- 209 (311)
T cd07497 134 VISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---- 209 (311)
T ss_pred EEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----
Confidence 99999997542211 011122333344433 479999999999999854 3467788999999998643110000
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
.+. .
T Consensus 210 ------------------~~~-------------------~--------------------------------------- 213 (311)
T cd07497 210 ------------------LFG-------------------Y--------------------------------------- 213 (311)
T ss_pred ------------------hhc-------------------c---------------------------------------
Confidence 000 0
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
.....
T Consensus 214 ---------------------------------------------------------------------------~~~~~ 218 (311)
T cd07497 214 ---------------------------------------------------------------------------LPGGS 218 (311)
T ss_pred ---------------------------------------------------------------------------ccCCC
Confidence 00112
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC-
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP- 650 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P- 650 (858)
+.++.||||||+.+ |++||||+|||++|+++.+.............|..|+|||||||||||++|||+|++|
T Consensus 219 ~~~~~fSs~Gp~~~-------g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~ 291 (311)
T cd07497 219 GDVVSWSSRGPSIA-------GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKE 291 (311)
T ss_pred CCccccccCCCCcc-------cCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhh
Confidence 45899999999987 8999999999999999876543211111234799999999999999999999999886
Q ss_pred -----CCCHHHHHHHHHccc
Q 003005 651 -----SFSPSAIASALSTSA 665 (858)
Q Consensus 651 -----~lsp~~ik~~L~~TA 665 (858)
.++|++||++|++||
T Consensus 292 ~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 292 KEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred hcCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3e-48 Score=413.74 Aligned_cols=271 Identities=28% Similarity=0.308 Sum_probs=203.0
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||||||.+||++.+... . ++.+...+.. ...
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~---~-----------------------~l~~~~~~~~------------~~~ 42 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS---G-----------------------DLPGNVNVLG------------DLD 42 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC---C-----------------------CCCcceeecc------------ccC
Confidence 4799999999999999999885432211 0 0101001100 012
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
...|..+|||||||||+ ||||+|+|+.+++.. ..+++++||+|++++|++|||||||
T Consensus 43 ~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 43 GGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 34578899999999995 999999999988643 3788999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhC-CCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeee
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~ 420 (858)
....+. .....+.++++++.++ |++||+||||++... ...|+..|++|+|||++.+.......
T Consensus 100 ~~~~~~---~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s------------ 164 (275)
T cd05562 100 YLNEPF---FQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS------------ 164 (275)
T ss_pred ccCCCc---ccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc------------
Confidence 754321 1234678888888887 999999999999854 34578899999999987542210000
Q ss_pred cCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEE
Q 003005 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (858)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 500 (858)
|. +
T Consensus 165 --------------------------------~~-------------------------~-------------------- 167 (275)
T cd05562 165 --------------------------------DP-------------------------A-------------------- 167 (275)
T ss_pred --------------------------------cc-------------------------c--------------------
Confidence 00 0
Q ss_pred EEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccccc
Q 003005 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (858)
Q Consensus 501 ~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 580 (858)
........+.|+++
T Consensus 168 ------------------------------------------------------------------~~~~~s~~~~~~~~ 181 (275)
T cd05562 168 ------------------------------------------------------------------PGGTPSSFDPVGIR 181 (275)
T ss_pred ------------------------------------------------------------------cCCCcccccCCccc
Confidence 00000124567889
Q ss_pred CCCCCCCCCCCcCcCCCcccCCCce-EEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 581 GPDPEDSFLDDADIMKPNLVAPGNS-IWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 581 GPt~~~~~~~~~g~~KPDI~APG~~-I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
||+.+ +++||||+|||+. +.++. .++.|..++|||||||||||++|||+|++|+|+++|||+
T Consensus 182 ~p~~~-------~~~~~di~Apgg~~~~~~~----------~~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~ 244 (275)
T cd05562 182 LPTPE-------VRQKPDVTAPDGVNGTVDG----------DGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRD 244 (275)
T ss_pred CcCCC-------CCcCCeEEcCCcccccCCC----------cCCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99876 6899999999763 44443 456899999999999999999999999999999999999
Q ss_pred HHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 660 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
+|++||+++...+ .+..||||+||+.+|++
T Consensus 245 ~L~~tA~~~~~~g-------------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 245 ALRSTALDMGEPG-------------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHhCcccCCCC-------------------CCCCcCcCcccHHHHhh
Confidence 9999998875332 35689999999999986
No 5
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.2e-48 Score=409.06 Aligned_cols=245 Identities=26% Similarity=0.393 Sum_probs=197.1
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||||||.+||+|.+... . .+|. +..
T Consensus 4 g~tG~gv~VaviDsGv~~~hp~l~~~~~------~-------------------------~~~~-------------~~~ 39 (255)
T cd07479 4 GYTGAGVKVAVFDTGLAKDHPHFRNVKE------R-------------------------TNWT-------------NEK 39 (255)
T ss_pred CCCCCCCEEEEEeCCCCCCCcchhcccc------c-------------------------cccC-------------CCC
Confidence 8999999999999999999999985311 0 0111 012
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
...|..+|||||||||+|+.+ ...||||+|+|+.+|++.+...+..++++++++|+++++++|||||||
T Consensus 40 ~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G 108 (255)
T cd07479 40 TLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIG 108 (255)
T ss_pred CCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeecc
Confidence 345778999999999998742 247999999999999998755567788999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCCCCceEEEeecccCceeeeEEEeCCceEEEeee
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~ 420 (858)
.... ....+.+++.++.++|++||+||||+|+... ..|+..+++|+|||++.+
T Consensus 109 ~~~~------~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------- 163 (255)
T cd07479 109 GPDF------MDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------- 163 (255)
T ss_pred CCCC------CCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------
Confidence 7432 2356777788889999999999999997533 356778899999985421
Q ss_pred cCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEE
Q 003005 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (858)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 500 (858)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccccc
Q 003005 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSAR 580 (858)
Q Consensus 501 ~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~ 580 (858)
+.++.|||+
T Consensus 164 -----------------------------------------------------------------------~~~~~~S~~ 172 (255)
T cd07479 164 -----------------------------------------------------------------------DNIARFSSR 172 (255)
T ss_pred -----------------------------------------------------------------------CccccccCC
Confidence 236789999
Q ss_pred CCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC----CCCHHH
Q 003005 581 GPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----SFSPSA 656 (858)
Q Consensus 581 GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----~lsp~~ 656 (858)
|++... -+...|++||||+|||.+|+++. ..+.|..++|||||||||||++|||+|++| .++|.+
T Consensus 173 g~~~~~-~p~~~g~~~~di~apG~~i~~~~----------~~~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~ 241 (255)
T cd07479 173 GMTTWE-LPGGYGRVKPDIVTYGSGVYGSK----------LKGGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPAS 241 (255)
T ss_pred CCCccc-ccCCCCCcCccEEecCCCeeccc----------cCCCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHH
Confidence 975311 01123789999999999999876 345789999999999999999999999999 689999
Q ss_pred HHHHHHccccccc
Q 003005 657 IASALSTSATLYD 669 (858)
Q Consensus 657 ik~~L~~TA~~~~ 669 (858)
||++|++||+++.
T Consensus 242 vk~~L~~sA~~~~ 254 (255)
T cd07479 242 MKQALIESATRLP 254 (255)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999864
No 6
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.7e-47 Score=434.39 Aligned_cols=409 Identities=23% Similarity=0.278 Sum_probs=235.2
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecch----hhhhcCccCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA----SAITRGIFNSSQ 259 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~----~~~~~~~~~~~~ 259 (858)
++|+||+|||||||||+.||+|...+. ..++...|++....+.... ...+...+.. ..... ....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg--~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~~---~~p~ 69 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDG--TTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALAS---DNPY 69 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCC--CchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHhc---CCcc
Confidence 489999999999999999999998765 5788999999876543211 1122222221 11111 1112
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC----------CCHHHHHHHHHHH
Q 003005 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG----------GFAADVVAAIDQA 329 (858)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~----------~~~~~i~~ai~~a 329 (858)
+.....|..||||||||||||+..+. ..+.||||+|+|+++|++..... +..++++.||+|+
T Consensus 70 ~~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~ 141 (455)
T cd07478 70 DIVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYL 141 (455)
T ss_pred ccCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHH
Confidence 22345688999999999999986431 35689999999999999987443 5688999999999
Q ss_pred HHC-----CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhC-CCEEEEecCCCCCCCCCCCCC-C----Cc--eEEEe
Q 003005 330 AQD-----GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPKSMSSF-S----PW--IFTVG 396 (858)
Q Consensus 330 ~~~-----g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-~----p~--vitVg 396 (858)
++. .+.|||||||.+.+..+ ..+.++++++.+..+ |++||+||||+|....+.... . .. -|.|+
T Consensus 142 ~~~a~~~~~p~VInlSlG~~~g~~~---g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~ 218 (455)
T cd07478 142 YDKALELNKPLVINISLGTNFGSHD---GTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVG 218 (455)
T ss_pred HHHHHHhCCCeEEEEccCcCCCCCC---CccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEEC
Confidence 874 47799999998766532 346788888888776 999999999999854333211 0 00 12222
Q ss_pred ecccCcee----------eeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccc
Q 003005 397 AASHDRIY----------TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQG 466 (858)
Q Consensus 397 A~~~~~~~----------~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~G 466 (858)
.-.....+ .-.+....|+..............+.+.+. ..
T Consensus 219 ~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~------------------------------~t 268 (455)
T cd07478 219 EGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFE------------------------------GT 268 (455)
T ss_pred CCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEEC------------------------------Ce
Confidence 21111000 000000111111000000000001111111 11
Q ss_pred eEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCc---ccCCCCCCCCeEEecChhhHHHHHHHHhccccc
Q 003005 467 NLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF---QLNPTPMKMPGIIIPSPDDSKILLQYYNSSLER 543 (858)
Q Consensus 467 kivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~ 543 (858)
++.+..+......|...+...+.+ ...|-=-+.++......+. .+......-+...+...+.. .....
T Consensus 269 ~i~v~y~~~~~~~g~~~i~i~~~~-~~~GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~~~~~--------~tit~ 339 (455)
T cd07478 269 TVYVYYYLPEPYTGDQLIFIRFKN-IKPGIWKIRLTGVSITDGRFDAWLPSRGLLSENTRFLEPDPY--------TTLTI 339 (455)
T ss_pred EEEEEEcCCCCCCCCeEEEEEccC-CCccceEEEEEeccCCCceEEEEecCcCcCCCCCEeecCCCC--------ceEec
Confidence 111111111111111000000000 0001111111111110000 00000000011111111000 00011
Q ss_pred ccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCc
Q 003005 544 DEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGE 623 (858)
Q Consensus 544 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~ 623 (858)
+.....+|++++.. ...+.++.||||||+.+ +++||||+|||++|+++. +++
T Consensus 340 Pa~~~~vitVga~~-----------~~~~~~~~~Ss~G~~~~-------~~~kpdi~APG~~i~s~~----------~~~ 391 (455)
T cd07478 340 PGTARSVITVGAYN-----------QNNNSIAIFSGRGPTRD-------GRIKPDIAAPGVNILTAS----------PGG 391 (455)
T ss_pred CCCCCCcEEEEEEe-----------CCCCcccCccCCCcCCC-------CCcCceEEecCCCEEEee----------cCC
Confidence 11334556666532 22346999999999987 799999999999999998 456
Q ss_pred cceeecccCchhHHHHHHHHHHHHhC------CCCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccc
Q 003005 624 SFAMMSGTSMAAPHIAGLAALIKQKF------PSFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMG 697 (858)
Q Consensus 624 ~y~~~sGTSMAaP~VAG~aALl~q~~------P~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G 697 (858)
.|..++|||||||||||++|||+|++ |.|++++||++|++||+++.. ..+++++||
T Consensus 392 ~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~------------------~~~pn~~~G 453 (455)
T cd07478 392 GYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPG------------------DEYPNPEWG 453 (455)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCC------------------CCCCCCCCC
Confidence 89999999999999999999999975 557999999999999998742 235678999
Q ss_pred cc
Q 003005 698 SG 699 (858)
Q Consensus 698 ~G 699 (858)
||
T Consensus 454 yG 455 (455)
T cd07478 454 YG 455 (455)
T ss_pred CC
Confidence 98
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=7.7e-47 Score=420.39 Aligned_cols=315 Identities=28% Similarity=0.438 Sum_probs=233.6
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCcc----ccccCCCCCCCCCceeeeeeecchhhh
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGI----CEVTRDFPSGSCNRKLIGARHFAASAI 250 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~n~kv~g~~~~~~~~~ 250 (858)
+|++. .++|+||+|||||||||++||+|.+... ....|.+. ..........+++.+++.+++|.+..
T Consensus 2 ~w~~~---~~~G~gv~VaViDtGv~~~hp~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (346)
T cd07475 2 LWDKG---GYKGEGMVVAVIDSGVDPTHDAFRLDDD-----SKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN- 72 (346)
T ss_pred hhhhc---CCCCCCcEEEEEeCCCCCCChhHccCCC-----cccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCC-
Confidence 57662 2489999999999999999999998754 11111100 01112233446678899999888651
Q ss_pred hcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcC--CCCCCHHHHHHHHHH
Q 003005 251 TRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYK--SFGGFAADVVAAIDQ 328 (858)
Q Consensus 251 ~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~--~~~~~~~~i~~ai~~ 328 (858)
.+.....+..+|||||||||+|...... ....+.||||+|+|+.+|++.. ........++.++++
T Consensus 73 --------~~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~ 139 (346)
T cd07475 73 --------DDILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIED 139 (346)
T ss_pred --------CccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHH
Confidence 1111144788999999999999864311 1135689999999999999973 344777889999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC----------------CCCCCce
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM----------------SSFSPWI 392 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~----------------~~~~p~v 392 (858)
+++.|++|||||||...... .....+..+++.+.++|++||+||||++...... |+..+++
T Consensus 140 a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 216 (346)
T cd07475 140 AVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDV 216 (346)
T ss_pred HHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCc
Confidence 99999999999999865432 3457888899999999999999999998754221 2233445
Q ss_pred EEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEE
Q 003005 393 FTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICS 472 (858)
Q Consensus 393 itVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~ 472 (858)
|+||+++..
T Consensus 217 i~Vga~~~~----------------------------------------------------------------------- 225 (346)
T cd07475 217 LTVASANKK----------------------------------------------------------------------- 225 (346)
T ss_pred eEEeecccc-----------------------------------------------------------------------
Confidence 555443200
Q ss_pred eccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEe
Q 003005 473 YSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIK 552 (858)
Q Consensus 473 ~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 552 (858)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccC
Q 003005 553 FGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTS 632 (858)
Q Consensus 553 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTS 632 (858)
......+.++.||+|||+.+ +++||||+|||.+|+++. .++.|..++|||
T Consensus 226 -------------~~~~~~~~~~~~S~~G~~~~-------~~~~pdi~apG~~i~s~~----------~~~~~~~~~GTS 275 (346)
T cd07475 226 -------------VPNPNGGQMSGFSSWGPTPD-------LDLKPDITAPGGNIYSTV----------NDNTYGYMSGTS 275 (346)
T ss_pred -------------cCCCCCCccCCCcCCCCCcc-------cCcCCeEEeCCCCeEEec----------CCCceEeeCcHH
Confidence 01112345889999999987 799999999999999988 456899999999
Q ss_pred chhHHHHHHHHHHHHh----CCCCCHHH----HHHHHHccccccccCCCccccccccCCCCCCCCCCCCCcccccccccc
Q 003005 633 MAAPHIAGLAALIKQK----FPSFSPSA----IASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNAT 704 (858)
Q Consensus 633 MAaP~VAG~aALl~q~----~P~lsp~~----ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 704 (858)
||||+|||++|||+|+ +|.|++.+ ||.+|++||.+..... .....+.+.++|+|+||+.
T Consensus 276 ~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~-------------~~~~~~~~~~~G~G~vn~~ 342 (346)
T cd07475 276 MASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE-------------DTKTYYSPRRQGAGLIDVA 342 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC-------------CCCccCCccccCcchhcHH
Confidence 9999999999999997 78899876 7889999998532111 1244567788999999999
Q ss_pred ccCC
Q 003005 705 ASLD 708 (858)
Q Consensus 705 ~A~~ 708 (858)
+|++
T Consensus 343 ~Av~ 346 (346)
T cd07475 343 KAIA 346 (346)
T ss_pred HhhC
Confidence 9985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-46 Score=408.76 Aligned_cols=297 Identities=29% Similarity=0.424 Sum_probs=227.9
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||+|||++||+|.++.. .. .++.+.++|..+... .
T Consensus 5 ~~~~----g~tG~gv~VaViDsGid~~hp~l~~~~~-~~-----------------------~~~~~~~d~~~~~~~--~ 54 (312)
T cd07489 5 LHAE----GITGKGVKVAVVDTGIDYTHPALGGCFG-PG-----------------------CKVAGGYDFVGDDYD--G 54 (312)
T ss_pred HHhC----CCCCCCCEEEEEECCCCCCChhhhcCCC-CC-----------------------ceeccccccCCcccc--c
Confidence 5555 8999999999999999999999998644 00 022222333221100 0
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
.+...+...+.|..+|||||||||+|+..+ ..+.||||+|+|+.+|++..........+++++++++++++
T Consensus 55 ~~~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 55 TNPPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred ccCCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 011123345667899999999999998542 24679999999999999986455677889999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEeC
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILG 411 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~ 411 (858)
+|||||||...... ...+..+++.+.++|+++|+||||+|.... ..|+..+++|+||+++
T Consensus 126 ~iIn~S~g~~~~~~-----~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------ 188 (312)
T cd07489 126 DVITASLGGPSGWS-----EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------ 188 (312)
T ss_pred CEEEeCCCcCCCCC-----CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec------------
Confidence 99999999865432 367778888999999999999999987532 2355667777777531
Q ss_pred CceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHH
Q 003005 412 NSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETA 491 (858)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~ 491 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCC
Q 003005 492 KNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSA 571 (858)
Q Consensus 492 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 571 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhC-C
Q 003005 572 PKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKF-P 650 (858)
Q Consensus 572 ~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~-P 650 (858)
+.||+|||+.+ .+.||||+|||++++++++.. .+.|..++|||||||+|||++|||+|++ |
T Consensus 189 ---~~~s~~g~~~~-------~~~kpdv~ApG~~i~~~~~~~--------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~ 250 (312)
T cd07489 189 ---SYFSSWGPTNE-------LYLKPDVAAPGGNILSTYPLA--------GGGYAVLSGTSMATPYVAGAAALLIQARHG 250 (312)
T ss_pred ---CCccCCCCCCC-------CCcCccEEcCCCCEEEeeeCC--------CCceEeeccHHHHHHHHHHHHHHHHHhcCC
Confidence 44789999987 689999999999999988532 2369999999999999999999999999 9
Q ss_pred CCCHHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeC
Q 003005 651 SFSPSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDA 715 (858)
Q Consensus 651 ~lsp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v~~~ 715 (858)
.+++.+||++|++||.++...+.. .....+++..++|+|+||+.+|++....+++
T Consensus 251 ~~~~~~v~~~l~~ta~~~~~~~~~----------~~~~~~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 251 KLSPAELRDLLASTAKPLPWSDGT----------SALPDLAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred CCCHHHHHHHHHHhCccccccCCC----------ccccCCCCHhhcCcceeeHHHHhcCCccccc
Confidence 999999999999999987544320 0011135677899999999999997655543
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.4e-45 Score=392.14 Aligned_cols=250 Identities=26% Similarity=0.314 Sum_probs=203.2
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
.|.. +++|+||+|||||+|||++||+|++... ......|
T Consensus 2 lw~~----g~~g~gV~VaViDsGid~~hp~l~~~~~---~~~~~~~---------------------------------- 40 (267)
T cd07476 2 LFAF----GGGDPRITIAILDGPVDRTHPCFRGANL---TPLFTYA---------------------------------- 40 (267)
T ss_pred ceec----cCCCCCeEEEEeCCCcCCCChhhCCCcc---ccccCcc----------------------------------
Confidence 4655 7999999999999999999999997533 0000000
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCC-CHHHHHHHHHHHHHCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG-FAADVVAAIDQAAQDG 333 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~-~~~~i~~ai~~a~~~g 333 (858)
.......|..+|||||||||+|+.. ..+.||||+|+|+.++++.....+ ...++++||+||+++|
T Consensus 41 ----~~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 41 ----AAACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQG 106 (267)
T ss_pred ----ccCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 0112335678999999999998753 235799999999999999764443 4678999999999999
Q ss_pred CCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCc
Q 003005 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 413 (858)
++|||||||..... ......+.++++.+.++|++||+||||++.....+|+..+++|+|||++.+
T Consensus 107 ~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------ 171 (267)
T cd07476 107 AHIINISGGRLTQT---GEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------ 171 (267)
T ss_pred CCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------
Confidence 99999999975422 224567889999999999999999999998877888899999999986421
Q ss_pred eEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHh
Q 003005 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (858)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 493 (858)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCc
Q 003005 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (858)
Q Consensus 494 ~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 573 (858)
+.
T Consensus 172 ------------------------------------------------------------------------------~~ 173 (267)
T cd07476 172 ------------------------------------------------------------------------------GL 173 (267)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 12
Q ss_pred cccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC--
Q 003005 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS-- 651 (858)
Q Consensus 574 ~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-- 651 (858)
++.||+||+.. .||||+|||.+|+++. +++.|..++|||||||||||++|||+|++|.
T Consensus 174 ~~~~s~~g~~~----------~~~~l~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~ 233 (267)
T cd07476 174 PLKFSNWGADY----------RKKGILAPGENILGAA----------LGGEVVRRSGTSFAAAIVAGIAALLLSLQLRRG 233 (267)
T ss_pred eeeecCCCCCC----------CCceEEecCCCceeec----------CCCCeEEeccHHHHHHHHHHHHHHHHHhhhhhC
Confidence 46689999864 4789999999999988 4568999999999999999999999999887
Q ss_pred --CCHHHHHHHHHccccccccCC
Q 003005 652 --FSPSAIASALSTSATLYDKNG 672 (858)
Q Consensus 652 --lsp~~ik~~L~~TA~~~~~~g 672 (858)
++|++||++|++||+++...+
T Consensus 234 ~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 234 APPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred CCCCHHHHHHHHHHhCccCCCcc
Confidence 899999999999999986543
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-44 Score=394.61 Aligned_cols=289 Identities=37% Similarity=0.533 Sum_probs=216.5
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc---cCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI---FNSSQDYA 262 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~---~~~~~~~~ 262 (858)
|+||+|||||+|||++||+|.+... .++++...++|......... ........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDA 56 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------------CCCceeeeeECccCCCCcccccccccccccC
Confidence 8999999999999999999996432 12233444444332100000 00000112
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
...|..+|||||||+|+|..++. ..+.||||+|+|+.+|++.....+...+++++|+|+++++++|||||||
T Consensus 57 ~~~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 57 SAGDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 24568899999999999885432 3567999999999999998545678889999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC--CCCCCCceEEEeecccCceeeeEEEeCCceEEEeee
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS--MSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVG 420 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~ 420 (858)
..... ..+.+..+++.+.++|+++|+||||+|..... .|+..+++|+|||++....
T Consensus 129 ~~~~~-----~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------- 186 (295)
T cd07474 129 SSVNG-----PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------- 186 (295)
T ss_pred CCCCC-----CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------
Confidence 75432 34678889999999999999999999876544 3677899999998641100
Q ss_pred cCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEE
Q 003005 421 LAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIV 500 (858)
Q Consensus 421 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i 500 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccc-
Q 003005 501 FYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA- 579 (858)
Q Consensus 501 ~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS- 579 (858)
........|++
T Consensus 187 --------------------------------------------------------------------~~~~~~~~~~s~ 198 (295)
T cd07474 187 --------------------------------------------------------------------AEADTVGPSSSR 198 (295)
T ss_pred --------------------------------------------------------------------CCCCceeccCCC
Confidence 00011233444
Q ss_pred cCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 580 ~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
.|+... .++||||+|||.+|+++.... ++.|..++|||||||+|||++|||+|++|+|++++||+
T Consensus 199 ~~~~~~-------~~~kpdv~apG~~i~~~~~~~--------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~ 263 (295)
T cd07474 199 GPPTSD-------SAIKPDIVAPGVDIMSTAPGS--------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKA 263 (295)
T ss_pred CCCCCC-------CCcCCCEECCcCceEeeccCC--------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 445543 689999999999999998532 35799999999999999999999999999999999999
Q ss_pred HHHccccccccCCCccccccccCCCCCCCCCCCCCcccccccccccc
Q 003005 660 ALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATAS 706 (858)
Q Consensus 660 ~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 706 (858)
+|++||++....+. ..+++..+|+|+||+.+|
T Consensus 264 ~L~~tA~~~~~~~~---------------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 264 ALMNTAKPLYDSDG---------------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHhhCcccccCCC---------------CcCChhccCcceeccccC
Confidence 99999998765432 112456899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-45 Score=383.34 Aligned_cols=227 Identities=29% Similarity=0.444 Sum_probs=187.2
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
|+|||||||||.+||+|.++.. ..+++. .....|..
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~------------------------------~~~~~~--------------~~~~~~~~ 36 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI------------------------------ARLFFA--------------GPGAPAPS 36 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc------------------------------ccccCC--------------CCCCCCCC
Confidence 7899999999999999987543 000000 01245678
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC---CCCHHHHHHHHHHHHHCCCCEEEEccCCCC
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF---GGFAADVVAAIDQAAQDGVDIISLSITPNR 345 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~---~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~ 345 (858)
+|||||||||+|+... ..||||+|+|+.+|++.... .+...++++||+||++.|++|||||||+..
T Consensus 37 ~HGT~vAgiia~~~~~-----------~~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~ 105 (239)
T cd05561 37 AHGTAVASLLAGAGAQ-----------RPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP 105 (239)
T ss_pred CCHHHHHHHHhCCCCC-----------CcccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 9999999999987531 15999999999999998632 266788999999999999999999999632
Q ss_pred CCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCC
Q 003005 346 RPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPG 424 (858)
Q Consensus 346 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (858)
...++++++.+.++|++||+||||+|... ..+|+..+++|+||+++.+
T Consensus 106 --------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~----------------------- 154 (239)
T cd05561 106 --------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR----------------------- 154 (239)
T ss_pred --------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-----------------------
Confidence 25788899999999999999999999753 4577888999999986421
Q ss_pred CCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEEC
Q 003005 425 TDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMD 504 (858)
Q Consensus 425 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 504 (858)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCC
Q 003005 505 PFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDP 584 (858)
Q Consensus 505 ~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~ 584 (858)
+.++.||++|+..
T Consensus 155 -------------------------------------------------------------------~~~~~~s~~g~~~ 167 (239)
T cd05561 155 -------------------------------------------------------------------GRLYREANRGAHV 167 (239)
T ss_pred -------------------------------------------------------------------CCccccCCCCCcc
Confidence 2356789999876
Q ss_pred CCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 003005 585 EDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (858)
Q Consensus 585 ~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 664 (858)
||+|||.+|+++. .++.|..++|||||||||||++|||+|++| ++++|||++|++|
T Consensus 168 -------------di~ApG~~i~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~t 223 (239)
T cd05561 168 -------------DFAAPGVDVWVAA----------PGGGYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAAT 223 (239)
T ss_pred -------------eEEccccceeccc----------CCCCEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 8999999999976 456899999999999999999999999999 9999999999999
Q ss_pred ccccccCC
Q 003005 665 ATLYDKNG 672 (858)
Q Consensus 665 A~~~~~~g 672 (858)
|+++...+
T Consensus 224 a~~~g~~~ 231 (239)
T cd05561 224 AKDLGPPG 231 (239)
T ss_pred hhccCCCC
Confidence 99875443
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.3e-45 Score=393.97 Aligned_cols=269 Identities=23% Similarity=0.367 Sum_probs=194.5
Q ss_pred CCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhh-----cCccC-----
Q 003005 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAIT-----RGIFN----- 256 (858)
Q Consensus 187 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~-----~~~~~----- 256 (858)
|+|+|||||||||++||||+++.+.+..+++. ++....+.++.. -+++++|...... ....+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~--~~~d~d~ng~~d------d~~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPG--NGIDDDNNGYID------DVNGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCC--CCccCCCCCccc------cccCeeccCCcccccccccCcccccccc
Confidence 68999999999999999999987744444332 222222222111 1344555431100 00000
Q ss_pred -CCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCC
Q 003005 257 -SSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVD 335 (858)
Q Consensus 257 -~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~ 335 (858)
...+...+.+..+|||||||||+|...++ .++.||||+|+|+.+|++.. ......++++||+||+++|++
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n~--------~g~~GvAp~a~i~~~k~~~~-g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDNG--------IGIDGVADNVKIMPLRIVPN-GDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCCC--------CceEEECCCCEEEEEEEecC-CCcCHHHHHHHHHHHHHCCCc
Confidence 01122345578999999999999975432 23679999999999999864 446778899999999999999
Q ss_pred EEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCC---CCC--------CCCceEEEeecccCcee
Q 003005 336 IISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKS---MSS--------FSPWIFTVGAASHDRIY 404 (858)
Q Consensus 336 VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~--------~~p~vitVgA~~~~~~~ 404 (858)
|||||||..... ....+..+++.+.++|+++|+||||+|.+... +|+ ..+++|+|||++..
T Consensus 144 IiN~S~G~~~~~-----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~--- 215 (291)
T cd07483 144 VINMSFGKSFSP-----NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK--- 215 (291)
T ss_pred EEEeCCCCCCCC-----ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc---
Confidence 999999964322 22467889999999999999999999875321 111 12455555553211
Q ss_pred eeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchH
Q 003005 405 TNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTI 484 (858)
Q Consensus 405 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~ 484 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccc
Q 003005 485 KQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLK 564 (858)
Q Consensus 485 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 564 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHH
Q 003005 565 ANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (858)
Q Consensus 565 ~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 644 (858)
.....++.||++|+. +|||.|||.+|+++. +++.|..++|||||||||||++||
T Consensus 216 ----~~~~~~~~~Sn~G~~------------~vdi~APG~~i~s~~----------~~~~~~~~sGTS~AaP~vaG~aAl 269 (291)
T cd07483 216 ----YENNLVANFSNYGKK------------NVDVFAPGERIYSTT----------PDNEYETDSGTSMAAPVVSGVAAL 269 (291)
T ss_pred ----CCcccccccCCCCCC------------ceEEEeCCCCeEecc----------CcCCeEeeccHHHHHHHHHHHHHH
Confidence 000136789999974 349999999999987 456899999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHcccc
Q 003005 645 IKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 645 l~q~~P~lsp~~ik~~L~~TA~ 666 (858)
|+|++|+|++.|||++|++||.
T Consensus 270 ~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 270 IWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-44 Score=385.19 Aligned_cols=247 Identities=28% Similarity=0.360 Sum_probs=198.4
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC-CCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS-PFD 266 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~-~~d 266 (858)
||+|||||||||++||+|..... ..+.++.+.++|.+. ... ..|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~-----------------------~~~~~i~~~~~~~~~------------~~~~~~~ 45 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL-----------------------FKNLRILGEYDFVDN------------SNNTNYT 45 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc-----------------------ccCCceeeeecCccC------------CCCCCCC
Confidence 79999999999999999963221 112356666776653 112 257
Q ss_pred CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC--CCHHHHHHHHHHHHHCCCCEEEEccCCC
Q 003005 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (858)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S~G~~ 344 (858)
..+|||||||||+|+.. +.+.||||+|+|+.+|+...... ....+++.+++|+.+.+++|||||||..
T Consensus 46 ~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~ 115 (261)
T cd07493 46 DDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT 115 (261)
T ss_pred CCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC
Confidence 88999999999999753 24679999999999998754222 3456789999999999999999999976
Q ss_pred CCCCC--------CCccCCHHHHHHHHHHhCCCEEEEecCCCCCC---CCCCCCCCCceEEEeecccCceeeeEEEeCCc
Q 003005 345 RRPPG--------IATFFNPIDMALLSAAKAGIFVVQAAGNTGPS---PKSMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (858)
Q Consensus 345 ~~~~~--------~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 413 (858)
..... .......+.++++.+.++|++||+||||++.. ...+|+..+++|+|||++.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------ 183 (261)
T cd07493 116 TFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------ 183 (261)
T ss_pred CCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------
Confidence 43221 11123467888999999999999999999987 35567888999999985421
Q ss_pred eEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHh
Q 003005 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (858)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 493 (858)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCc
Q 003005 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (858)
Q Consensus 494 ~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 573 (858)
+.
T Consensus 184 ------------------------------------------------------------------------------~~ 185 (261)
T cd07493 184 ------------------------------------------------------------------------------GN 185 (261)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred cccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCC
Q 003005 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFS 653 (858)
Q Consensus 574 ~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ls 653 (858)
++.||++||+.+ +++||||+|||.+|++.. ..+.|..++|||||||+|||++|||+|++|+|+
T Consensus 186 ~~~~S~~G~~~~-------~~~~pdi~a~G~~~~~~~----------~~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt 248 (261)
T cd07493 186 KASFSSIGPTAD-------GRLKPDVMALGTGIYVIN----------GDGNITYANGTSFSCPLIAGLIACLWQAHPNWT 248 (261)
T ss_pred CCccCCcCCCCC-------CCcCCceEecCCCeEEEc----------CCCcEEeeCcHHHHHHHHHHHHHHHHHHCCCCC
Confidence 677999999986 799999999999999854 455899999999999999999999999999999
Q ss_pred HHHHHHHHHcccc
Q 003005 654 PSAIASALSTSAT 666 (858)
Q Consensus 654 p~~ik~~L~~TA~ 666 (858)
+.|||++|++||+
T Consensus 249 ~~~i~~~l~~tA~ 261 (261)
T cd07493 249 NLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=4.4e-44 Score=382.55 Aligned_cols=247 Identities=34% Similarity=0.478 Sum_probs=196.5
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
|+||+|||||+|||++||+|.+... .|... .+...+.+ ++.......|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~--------~~~~~--------------~~~~~~~~---------~d~~~~~~~~~ 49 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYR--------GWGGG--------------SADHDYNW---------FDPVGNTPLPY 49 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhccc--------ccCCC--------------Cccccccc---------ccCCCCCCCCC
Confidence 8999999999999999999998622 00000 00000000 11111234566
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH------------CC
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ------------DG 333 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~------------~g 333 (858)
|..+|||||||||+|..... ...||||+|+|+.+|++... .+...+++++++|+++ .+
T Consensus 50 d~~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 50 DDNGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRN-GGNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCCCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCC-CCcHHHHHHHHHHHHhcccccccccccccC
Confidence 88899999999999875321 23799999999999999873 4778899999999975 68
Q ss_pred CCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEe
Q 003005 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIIL 410 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~ 410 (858)
++|||||||.... ....+..+++.+.++|++||+||||++.... .+|+.++++|+|||++.+
T Consensus 120 ~~Iin~S~G~~~~------~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~--------- 184 (264)
T cd07481 120 PDVINNSWGGPSG------DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN--------- 184 (264)
T ss_pred CeEEEeCCCcCCC------CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC---------
Confidence 9999999997542 2356778888999999999999999987543 256778899999985421
Q ss_pred CCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHH
Q 003005 411 GNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFET 490 (858)
Q Consensus 411 ~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~ 490 (858)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCC
Q 003005 491 AKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNS 570 (858)
Q Consensus 491 ~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 570 (858)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC
Q 003005 571 APKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP 650 (858)
Q Consensus 571 ~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P 650 (858)
+.++.||++||... ++.||||+|||.+|+++. .++.|..++|||||||+|||++|||+|++|
T Consensus 185 -~~~~~~S~~g~~~~-------~~~~~dv~ApG~~i~s~~----------~~~~~~~~~GTS~AaP~vaG~aAll~~~~p 246 (264)
T cd07481 185 -DVLADFSSRGPSTY-------GRIKPDISAPGVNIRSAV----------PGGGYGSSSGTSMAAPHVAGVAALLWSANP 246 (264)
T ss_pred -CCCccccCCCCCCC-------CCcCceEEECCCCeEEec----------CCCceEeeCcHHHHHHHHHHHHHHHHHhCC
Confidence 23678999999986 799999999999999998 456899999999999999999999999999
Q ss_pred C--CCHHHHHHHHHcccc
Q 003005 651 S--FSPSAIASALSTSAT 666 (858)
Q Consensus 651 ~--lsp~~ik~~L~~TA~ 666 (858)
+ ++++|||.+|++||+
T Consensus 247 ~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 247 SLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 9 999999999999985
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3.9e-43 Score=386.18 Aligned_cols=221 Identities=25% Similarity=0.362 Sum_probs=166.7
Q ss_pred CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCC--CHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGG--FAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~--~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
.|+.+|||||||||||+..+. ..+.||||+|+|+++|+++...+. ...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 377899999999999985321 346799999999999998753332 2356999999999999999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHH-HHhCCCEEEEecCCCCCCCCCC--CC-CCCceEEEeecccCceeeeEEEeCCceEEEe
Q 003005 343 PNRRPPGIATFFNPIDMALLS-AAKAGIFVVQAAGNTGPSPKSM--SS-FSPWIFTVGAASHDRIYTNSIILGNSLTISG 418 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~--~~-~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~ 418 (858)
.....+.. ..+.+++.+ +.++|++||+||||+|+...+. |+ ..++||+|||+........
T Consensus 254 ~~~~~~~~----~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~------------ 317 (412)
T cd04857 254 EATHWPNS----GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAA------------ 317 (412)
T ss_pred cCCCCccc----hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccc------------
Confidence 86543221 223444443 4568999999999999876553 43 4789999999643211000
Q ss_pred eecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeE
Q 003005 419 VGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAG 498 (858)
Q Consensus 419 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g 498 (858)
.|.+
T Consensus 318 ---------~y~~------------------------------------------------------------------- 321 (412)
T cd04857 318 ---------EYSL------------------------------------------------------------------- 321 (412)
T ss_pred ---------cccc-------------------------------------------------------------------
Confidence 0000
Q ss_pred EEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccccc
Q 003005 499 IVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYS 578 (858)
Q Consensus 499 ~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 578 (858)
.....+.++.||
T Consensus 322 --------------------------------------------------------------------~~~~~~~~~~fS 333 (412)
T cd04857 322 --------------------------------------------------------------------REKLPGNQYTWS 333 (412)
T ss_pred --------------------------------------------------------------------ccccCCcccccc
Confidence 000124588999
Q ss_pred ccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----hCCCCCH
Q 003005 579 ARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSP 654 (858)
Q Consensus 579 S~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~lsp 654 (858)
||||+.+ |++||||+|||..|.|.- .+ ....|..|+|||||||||||++|||++ .+|+|+|
T Consensus 334 SrGP~~d-------G~~~pdI~APG~~I~s~p-~~-------~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp 398 (412)
T cd04857 334 SRGPTAD-------GALGVSISAPGGAIASVP-NW-------TLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTP 398 (412)
T ss_pred ccCCccc-------CCcCceEEeCCCcEEEcc-cC-------CCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCH
Confidence 9999998 899999999999998752 21 234789999999999999999999985 5789999
Q ss_pred HHHHHHHHcccccc
Q 003005 655 SAIASALSTSATLY 668 (858)
Q Consensus 655 ~~ik~~L~~TA~~~ 668 (858)
.+||++|++||+++
T Consensus 399 ~~Vk~aL~~TA~~~ 412 (412)
T cd04857 399 YSVRRALENTAKKL 412 (412)
T ss_pred HHHHHHHHHhCccC
Confidence 99999999999864
No 16
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.6e-43 Score=374.71 Aligned_cols=258 Identities=34% Similarity=0.567 Sum_probs=206.4
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
|+||+|+|||+|||++||+|.+... ..+. +.. .........
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~-------~~~~-----------------------~~~---------~~~~~~~~~ 41 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII-------RFAD-----------------------FVN---------TVNGRTTPY 41 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc-------cccc-----------------------ccc---------cccCCCCCC
Confidence 8999999999999999999998644 0000 000 001123455
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC----CCCEEEEcc
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD----GVDIISLSI 341 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~----g~~VIN~S~ 341 (858)
|..+|||||||||+|+.... ...+.||||+|+|+.+|+++....+...+++++++|+++. +++||||||
T Consensus 42 d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~ 114 (264)
T cd07487 42 DDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSL 114 (264)
T ss_pred CCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEecc
Confidence 77899999999999985421 1346899999999999999875557888999999999998 999999999
Q ss_pred CCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC--CCCCCCCceEEEeecccCceeeeEEEeCCceEEEee
Q 003005 342 TPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK--SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGV 419 (858)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~ 419 (858)
|..... ....+.+.++++.+.++|++||+||||++.... ..|+..+++|+|||++.+...
T Consensus 115 g~~~~~---~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~--------------- 176 (264)
T cd07487 115 GAPPDP---SYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH--------------- 176 (264)
T ss_pred CCCCCC---CCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC---------------
Confidence 986543 335678899999999999999999999998765 567788999999997533110
Q ss_pred ecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEE
Q 003005 420 GLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGI 499 (858)
Q Consensus 420 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~ 499 (858)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccc
Q 003005 500 VFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSA 579 (858)
Q Consensus 500 i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS 579 (858)
...++.||+
T Consensus 177 -----------------------------------------------------------------------~~~~~~~s~ 185 (264)
T cd07487 177 -----------------------------------------------------------------------DDGISYFSS 185 (264)
T ss_pred -----------------------------------------------------------------------Ccccccccc
Confidence 013678999
Q ss_pred cCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 580 RGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 580 ~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
+||+.+ ++.||||+|||++|++..+..... ....++.|..++|||||||+|||++|||+|++|.+++++||+
T Consensus 186 ~G~~~~-------~~~~~di~apG~~i~~~~~~~~~~-~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~ 257 (264)
T cd07487 186 RGPTGD-------GRIKPDVVAPGENIVSCRSPGGNP-GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKC 257 (264)
T ss_pred CCCCCC-------CCcCCCEEccccceEecccccccc-CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHH
Confidence 999987 799999999999999986533111 112456899999999999999999999999999999999999
Q ss_pred HHHcccc
Q 003005 660 ALSTSAT 666 (858)
Q Consensus 660 ~L~~TA~ 666 (858)
+|++||+
T Consensus 258 ~L~~tA~ 264 (264)
T cd07487 258 ILRDTAT 264 (264)
T ss_pred HHHhhcC
Confidence 9999985
No 17
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=3.3e-42 Score=369.96 Aligned_cols=263 Identities=29% Similarity=0.403 Sum_probs=200.0
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.+......+.. ....+.+..
T Consensus 2 aw~~----g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~----------------------~~~~~~~~~------- 48 (273)
T cd07485 2 AWEF----GTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDP----------------------AVNGYNFVP------- 48 (273)
T ss_pred cccc----ccCCCCcEEEEEeCCCCCCChhhccCCCCCCccc----------------------ccCCccccc-------
Confidence 5666 7899999999999999999999998722011100 000000000
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV 334 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~ 334 (858)
+.........|..+|||||||||+|+.+......|.. .+.|+||+|+|+.+|++.........+++++|+|+++.|+
T Consensus 49 -~~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~ 125 (273)
T cd07485 49 -NVGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGA 125 (273)
T ss_pred -ccCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCC
Confidence 0001123345678999999999999764332222221 3457999999999999987555778889999999999999
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhC-------CCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeE
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKA-------GIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNS 407 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~ 407 (858)
+|||||||.... ..+...+.++++.+.++ |++||+||||++......|+..+++|+||+++.+
T Consensus 126 ~Vin~S~g~~~~----~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------ 195 (273)
T cd07485 126 VILQNSWGGTGG----GIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------ 195 (273)
T ss_pred cEEEecCCCCCc----cccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------
Confidence 999999997542 12345677888888888 9999999999998877778889999999986421
Q ss_pred EEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHH
Q 003005 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQA 487 (858)
Q Consensus 408 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~ 487 (858)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccccccc
Q 003005 488 FETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANF 567 (858)
Q Consensus 488 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 567 (858)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCc-eEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHH
Q 003005 568 SNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGN-SIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIK 646 (858)
Q Consensus 568 ~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~-~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~ 646 (858)
+.++.||++|+.. ||+|||. .|+++.+.... ...+.|..++|||||||+|||++|||+
T Consensus 196 ----~~~~~~S~~g~~~-------------~i~apG~~~i~~~~~~~~~----~~~~~~~~~sGTS~AaP~VaG~aAll~ 254 (273)
T cd07485 196 ----DNKASFSNYGRWV-------------DIAAPGVGTILSTVPKLDG----DGGGNYEYLSGTSMAAPHVSGVAALVL 254 (273)
T ss_pred ----CCcCccccCCCce-------------EEEeCCCCccccccccccC----CCCCCeEeeccHHHHHHHHHHHHHHHH
Confidence 2356799999876 8999999 89888754321 124579999999999999999999999
Q ss_pred HhCCC-CCHHHHHHHHHcc
Q 003005 647 QKFPS-FSPSAIASALSTS 664 (858)
Q Consensus 647 q~~P~-lsp~~ik~~L~~T 664 (858)
|++|+ ++|+|||++|++|
T Consensus 255 ~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 255 SKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HhCCCCCCHHHHHHHHHhC
Confidence 99999 9999999999986
No 18
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-42 Score=370.19 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=122.3
Q ss_pred ccCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecch
Q 003005 168 FLGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAA 247 (858)
Q Consensus 168 ~~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~ 247 (858)
.+++.. +|.. +++|+||+||||||||+..|| |..... .. ++. +..
T Consensus 7 ~l~~~~-~~~~----G~~G~Gv~VaViDTGv~~~h~-~~~~~~----------~~---------------~~~----~~~ 51 (298)
T cd07494 7 LLNATR-VHQR----GITGRGVRVAMVDTGFYAHPF-FESRGY----------QV---------------RVV----LAP 51 (298)
T ss_pred hcChhH-HHhc----CCCCCCcEEEEEeCCCcCCch-hhcCCc----------cc---------------eee----cCC
Confidence 345544 6765 899999999999999999898 665322 00 000 000
Q ss_pred hhhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHH
Q 003005 248 SAITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAID 327 (858)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~ 327 (858)
.......|+.||||||||++. ||||+|+|+.+|+++. ..++++++|+
T Consensus 52 -----------~~~~~~~D~~gHGT~vag~i~------------------GvAP~a~i~~vkv~~~----~~~~~~~ai~ 98 (298)
T cd07494 52 -----------GATDPACDENGHGTGESANLF------------------AIAPGAQFIGVKLGGP----DLVNSVGAFK 98 (298)
T ss_pred -----------CCCCCCCCCCCcchheeecee------------------EeCCCCeEEEEEccCC----CcHHHHHHHH
Confidence 011234578899999998753 9999999999999875 3467899999
Q ss_pred HHHHCCCCEEEEccCCCCCCCCC------CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeeccc
Q 003005 328 QAAQDGVDIISLSITPNRRPPGI------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASH 400 (858)
Q Consensus 328 ~a~~~g~~VIN~S~G~~~~~~~~------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~ 400 (858)
||++++++|||||||........ ......+++++++|.++|++||+||||++. .+|+..|+||+|||++.
T Consensus 99 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~ 174 (298)
T cd07494 99 KAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFV 174 (298)
T ss_pred HHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEec
Confidence 99999999999999975432210 112346888999999999999999999975 57999999999999753
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-42 Score=376.18 Aligned_cols=263 Identities=24% Similarity=0.237 Sum_probs=189.8
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
.+|||||||||.+||+|.+... .+ ..+. . ....+.|..
T Consensus 1 p~VaviDtGi~~~hp~l~~~~~--------~~----------------------~~~~----------~--~~~~~~d~~ 38 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPALA--------ED----------------------DLDS----------D--EPGWTADDL 38 (291)
T ss_pred CEEEEecCCCCCCChhhhhhhc--------cc----------------------cccc----------c--CCCCcCCCC
Confidence 3799999999999999998643 00 0000 0 001156889
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC----CCCHHHHHHHHHHHHHCC---CCEEEEcc
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF----GGFAADVVAAIDQAAQDG---VDIISLSI 341 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~----~~~~~~i~~ai~~a~~~g---~~VIN~S~ 341 (858)
||||||||||++.... .....|+||+|+|+.+|++...+ .....+++++|+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999975432 12346999999999999998743 256678999999999853 48999999
Q ss_pred CCCCCCCCCCccCCHHHHHHH-HHHhCCCEEEEecCCCCCCCCC------------CCCCCCceEEEeecccCceeeeEE
Q 003005 342 TPNRRPPGIATFFNPIDMALL-SAAKAGIFVVQAAGNTGPSPKS------------MSSFSPWIFTVGAASHDRIYTNSI 408 (858)
Q Consensus 342 G~~~~~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~~p~vitVgA~~~~~~~~~~~ 408 (858)
|....... .....+..+++ .+.++|++||+||||++..... .|+.++++|+|||++.+.......
T Consensus 111 G~~~~~~~--~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s 188 (291)
T cd04847 111 GSPLPIDD--GRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRA 188 (291)
T ss_pred CCCCCccC--CCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcc
Confidence 98654321 11234555554 3568999999999999987543 356678999999987543210000
Q ss_pred EeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHH
Q 003005 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (858)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 488 (858)
.+ +
T Consensus 189 ~~---------------------------------------------------------------------~-------- 191 (291)
T cd04847 189 RY---------------------------------------------------------------------S-------- 191 (291)
T ss_pred cc---------------------------------------------------------------------c--------
Confidence 00 0
Q ss_pred HHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccC
Q 003005 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (858)
Q Consensus 489 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 568 (858)
.
T Consensus 192 -------------------------------------------------------------------------------~ 192 (291)
T cd04847 192 -------------------------------------------------------------------------------A 192 (291)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred CCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCC--------CccccCccceeecccCchhHHHHH
Q 003005 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD--------SVEFQGESFAMMSGTSMAAPHIAG 640 (858)
Q Consensus 569 ~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~--------~~~~~~~~y~~~sGTSMAaP~VAG 640 (858)
......+.|||+||..+ +++||||+|||++|.+..+..... .....++.|..++|||||||||||
T Consensus 193 ~~~~~~~~fs~~Gp~~~-------~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag 265 (291)
T cd04847 193 VGPAPAGATTSSGPGSP-------GPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAAR 265 (291)
T ss_pred cccccCCCccccCCCCC-------CCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHH
Confidence 00011334999999987 799999999999998865422110 011145689999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 641 LAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 641 ~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
++|||+|++|+++|++||++|++||+
T Consensus 266 ~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 266 LAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999985
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=9.2e-42 Score=363.11 Aligned_cols=229 Identities=32% Similarity=0.476 Sum_probs=192.5
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||+||+++||+|.++.. ..+++... .
T Consensus 21 ~~~G~gv~VaViDsGi~~~h~~~~~~~~------------------------------~~~~~~~~-------------~ 57 (255)
T cd04077 21 SSTGSGVDVYVLDTGIRTTHVEFGGRAI------------------------------WGADFVGG-------------D 57 (255)
T ss_pred CCCCCCcEEEEEcCCCCCCChhhhCCee------------------------------eeeecCCC-------------C
Confidence 6999999999999999999999987532 11122111 1
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC-----CCCEE
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD-----GVDII 337 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~-----g~~VI 337 (858)
...|..+|||||||||+|+. .||||+|+|+.+|+++....+..++++.+++|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 14578899999999999863 499999999999999875567888999999999987 48999
Q ss_pred EEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEE
Q 003005 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (858)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 416 (858)
|||||... ...+..+++.+.++|++||+||||+|... ...|+..+++|+|||++.+
T Consensus 124 n~S~g~~~--------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~--------------- 180 (255)
T cd04077 124 NMSLGGGA--------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD--------------- 180 (255)
T ss_pred EeCCCCCC--------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC---------------
Confidence 99999753 35788889999999999999999999865 4567888999999986422
Q ss_pred EeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCC
Q 003005 417 SGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSA 496 (858)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga 496 (858)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccc
Q 003005 497 AGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576 (858)
Q Consensus 497 ~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 576 (858)
+.++.
T Consensus 181 ---------------------------------------------------------------------------~~~~~ 185 (255)
T cd04077 181 ---------------------------------------------------------------------------DARAS 185 (255)
T ss_pred ---------------------------------------------------------------------------CCccC
Confidence 12577
Q ss_pred ccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHH
Q 003005 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSA 656 (858)
Q Consensus 577 fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ 656 (858)
||++||.. ||+|||.+|.++... .++.|..++|||||||+|||++|||+|++|+++++|
T Consensus 186 ~S~~g~~~-------------~i~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ 244 (255)
T cd04077 186 FSNYGSCV-------------DIFAPGVDILSAWIG--------SDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAE 244 (255)
T ss_pred cccCCCCC-------------cEEeCCCCeEecccC--------CCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHH
Confidence 89999876 899999999998743 245889999999999999999999999999999999
Q ss_pred HHHHHHccccc
Q 003005 657 IASALSTSATL 667 (858)
Q Consensus 657 ik~~L~~TA~~ 667 (858)
||++|++||++
T Consensus 245 v~~~L~~tA~~ 255 (255)
T cd04077 245 VKARLLNLATK 255 (255)
T ss_pred HHHHHHhhccC
Confidence 99999999974
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-41 Score=361.18 Aligned_cols=253 Identities=28% Similarity=0.471 Sum_probs=190.5
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||+|||++||+|.+... .| .+|... .........|.
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~--------~~----------------------~~~~~~--------~~~~~~~~~d~ 42 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVA--------QW----------------------ADFDEN--------RRISATEVFDA 42 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccC--------Cc----------------------eeccCC--------CCCCCCCCCCC
Confidence 79999999999999999987543 11 011100 00112344577
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||||+|+..+ +...||||+|+|+.+|++... ++..++++++|+|+++.+++|||||||.....
T Consensus 43 ~~HGT~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 43 GGHGTHVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDG-GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred CCcHHHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCC-CCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 89999999999998542 235799999999999999873 37788999999999999999999999975432
Q ss_pred CCCCccCCHHHHHHHHHHh-CCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCCC
Q 003005 348 PGIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTD 426 (858)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (858)
.+.+..+++.+.+ +|++||+||||++......|+..+++|+|||++.+.....+..
T Consensus 113 ------~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~----------------- 169 (254)
T cd07490 113 ------EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS----------------- 169 (254)
T ss_pred ------CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC-----------------
Confidence 3566777766665 6999999999999887788899999999999864421000000
Q ss_pred ceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 427 KMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 427 ~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
+
T Consensus 170 --------------------------~----------------------------------------------------- 170 (254)
T cd07490 170 --------------------------F----------------------------------------------------- 170 (254)
T ss_pred --------------------------C-----------------------------------------------------
Confidence 0
Q ss_pred CcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCC
Q 003005 507 VIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPED 586 (858)
Q Consensus 507 ~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~ 586 (858)
........+.+|....
T Consensus 171 ----------------------------------------------------------------g~~~~~~~~~~~~~~~ 186 (254)
T cd07490 171 ----------------------------------------------------------------GSSGASLVSAPDSPPD 186 (254)
T ss_pred ----------------------------------------------------------------cccccccccCCCCCcc
Confidence 0001222333444332
Q ss_pred CCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 587 SFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 587 ~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
...||||+|||.+|+++..... ..+.|..++|||||||+|||++|||+|++|+|+++|||.+|++||+
T Consensus 187 ------~~~~~d~~apG~~i~~~~~~~~------~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 187 ------EYTKPDVAAPGVDVYSARQGAN------GDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCcCceEEeccCCeEccccCCC------CCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999652211 4568999999999999999999999999999999999999999984
No 22
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-41 Score=366.30 Aligned_cols=269 Identities=27% Similarity=0.349 Sum_probs=192.5
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||||||++||+|.++.. ..+. +-.......+.. ....+.....+|..+... .+.........+.
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~-~g~d----~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~ 70 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLL-PGYD----FISDPAIANDGD--GRDSDPTDPGDWVTGDDV---PPGGFCGSGVSPS 70 (285)
T ss_pred CCEEEEecCCCCCCCcchhhccc-cCcc----cccCcccccCCC--CCCCCCCCcccccccccc---cccccccCCCCCC
Confidence 79999999999999999998753 0111 100000000000 000000000000000000 0011112334567
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH----------HCCCCEE
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA----------QDGVDII 337 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~----------~~g~~VI 337 (858)
.+|||||||||+|...++ ..+.||||+|+|+.+|++.. .++..+++++|++|++ .++++||
T Consensus 71 ~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~-~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Ii 141 (285)
T cd07496 71 SWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGK-CGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVI 141 (285)
T ss_pred CCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecC-CCCcHHHHHHHHHHHhccCcCCCcccCCCCeEE
Confidence 899999999999985422 24579999999999999987 4458889999999998 4578999
Q ss_pred EEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC-CCCCCCCCceEEEeecccCceeeeEEEeCCceEE
Q 003005 338 SLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP-KSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTI 416 (858)
Q Consensus 338 N~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~ 416 (858)
|||||..... ...+.++++.+.++|++||+||||++... ..+|+..+++|+|||++.+
T Consensus 142 n~S~G~~~~~------~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------- 200 (285)
T cd07496 142 NLSLGGDGAC------SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR--------------- 200 (285)
T ss_pred EeCCCCCCCC------CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC---------------
Confidence 9999975421 35788899999999999999999999876 6678888999999986422
Q ss_pred EeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCC
Q 003005 417 SGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSA 496 (858)
Q Consensus 417 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga 496 (858)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCcccc
Q 003005 497 AGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMY 576 (858)
Q Consensus 497 ~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 576 (858)
+.++.
T Consensus 201 ---------------------------------------------------------------------------~~~~~ 205 (285)
T cd07496 201 ---------------------------------------------------------------------------GQRAS 205 (285)
T ss_pred ---------------------------------------------------------------------------CCccc
Confidence 23678
Q ss_pred ccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCC-----CccccCccceeecccCchhHHHHHHHHHHHHhCCC
Q 003005 577 YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTD-----SVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS 651 (858)
Q Consensus 577 fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~-----~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~ 651 (858)
||++||.. ||+|||.+|.++....... ........|..++|||||||+|||++|||+|++|+
T Consensus 206 ~S~~g~~v-------------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~ 272 (285)
T cd07496 206 YSNYGPAV-------------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPS 272 (285)
T ss_pred ccCCCCCC-------------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCC
Confidence 99999976 8999999999887543210 11223457899999999999999999999999999
Q ss_pred CCHHHHHHHHHcc
Q 003005 652 FSPSAIASALSTS 664 (858)
Q Consensus 652 lsp~~ik~~L~~T 664 (858)
|++++||++|++|
T Consensus 273 lt~~~v~~~L~~t 285 (285)
T cd07496 273 LTPAQIESLLQST 285 (285)
T ss_pred CCHHHHHHHHHhC
Confidence 9999999999976
No 23
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.8e-41 Score=361.95 Aligned_cols=244 Identities=34% Similarity=0.495 Sum_probs=201.6
Q ss_pred cCCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchh
Q 003005 169 LGLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAAS 248 (858)
Q Consensus 169 ~~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~ 248 (858)
++.+. +|.. + +|+||+|||||+|||++||+|..... ...+++...
T Consensus 16 ~~~~~-~~~~----~-~G~gv~I~viDsGi~~~h~~l~~~~~-----------------------------~~~~~~~~~ 60 (260)
T cd07484 16 IGAPK-AWDI----T-GGSGVTVAVVDTGVDPTHPDLLKVKF-----------------------------VLGYDFVDN 60 (260)
T ss_pred cChHH-HHhh----c-CCCCCEEEEEeCCCCCCCcccccCCc-----------------------------ccceeccCC
Confidence 44444 7776 3 99999999999999999999854322 112222211
Q ss_pred hhhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHH
Q 003005 249 AITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQ 328 (858)
Q Consensus 249 ~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~ 328 (858)
...+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++....+...+++++|++
T Consensus 61 ------------~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~ 120 (260)
T cd07484 61 ------------DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRY 120 (260)
T ss_pred ------------CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHH
Confidence 1235578899999999999874322 24679999999999999987556788899999999
Q ss_pred HHHCCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEE
Q 003005 329 AAQDGVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSI 408 (858)
Q Consensus 329 a~~~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~ 408 (858)
+++.+++|||||||... ....+.++++.+.++|++||+||||+|.....+|+..+++|+||+++.+
T Consensus 121 a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------- 186 (260)
T cd07484 121 AADKGAKVINLSLGGGL-------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------- 186 (260)
T ss_pred HHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-------
Confidence 99999999999999753 3467888999999999999999999999888889999999999986422
Q ss_pred EeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHH
Q 003005 409 ILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAF 488 (858)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~ 488 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccC
Q 003005 489 ETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFS 568 (858)
Q Consensus 489 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 568 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHh
Q 003005 569 NSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQK 648 (858)
Q Consensus 569 ~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~ 648 (858)
+.++.||++|+.. |++|||.+|+++. ..+.|..++|||||||+|||++|||+|+
T Consensus 187 ---~~~~~~s~~g~~~-------------~~~apG~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~Al~~~~ 240 (260)
T cd07484 187 ---DKRASFSNYGKWV-------------DVSAPGGGILSTT----------PDGDYAYMSGTSMATPHVAGVAALLYSQ 240 (260)
T ss_pred ---CCcCCcCCCCCCc-------------eEEeCCCCcEeec----------CCCCEEEeeeHHHHHHHHHHHHHHHHhc
Confidence 1356789999765 8999999999987 3458999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHcccccc
Q 003005 649 FPSFSPSAIASALSTSATLY 668 (858)
Q Consensus 649 ~P~lsp~~ik~~L~~TA~~~ 668 (858)
+| +++++||++|++||+++
T Consensus 241 ~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 241 GP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-CCHHHHHHHHHHhCccC
Confidence 99 99999999999999875
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=4.4e-41 Score=365.67 Aligned_cols=278 Identities=27% Similarity=0.355 Sum_probs=201.2
Q ss_pred CCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCC
Q 003005 182 YETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDY 261 (858)
Q Consensus 182 ~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~ 261 (858)
.+++|+||+|||||+|||++||+|.+... . ...+.++++.....+..
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~-~------------------~~~~~~~~~~~~~~~~~-------------- 48 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF-N------------------KTNLFHRKIVRYDSLSD-------------- 48 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc-C------------------cCccCcccEEEeeccCC--------------
Confidence 47999999999999999999999987532 0 00012223333222221
Q ss_pred CCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC-CCHHHHHHHHHHHHHCCCCEEEEc
Q 003005 262 ASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG-GFAADVVAAIDQAAQDGVDIISLS 340 (858)
Q Consensus 262 ~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-~~~~~i~~ai~~a~~~g~~VIN~S 340 (858)
...|..+|||||||||+|+.+.... ...+.||||+|+|+.+|++..... ....++..+++++.+.+++|||||
T Consensus 49 -~~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 49 -TKDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred -CCCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEecc
Confidence 1227899999999999998643210 114679999999999999886332 455678899999999999999999
Q ss_pred cCCCCCCCCCCccCCHHHHHHHHHH-h-CCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEeCCceE
Q 003005 341 ITPNRRPPGIATFFNPIDMALLSAA-K-AGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLT 415 (858)
Q Consensus 341 ~G~~~~~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~ 415 (858)
||..... .......++..+. + +|++||+||||++.... ..|+..+++|+|||++......
T Consensus 123 ~G~~~~~-----~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~---------- 187 (293)
T cd04842 123 WGSPVNN-----GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN---------- 187 (293)
T ss_pred CCCCCcc-----ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc----------
Confidence 9986432 1234445554443 3 79999999999998765 6778899999999986542200
Q ss_pred EEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCC
Q 003005 416 ISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLS 495 (858)
Q Consensus 416 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~G 495 (858)
...|..
T Consensus 188 ----------------------------------~~~~~~---------------------------------------- 193 (293)
T cd04842 188 ----------------------------------GEGGLG---------------------------------------- 193 (293)
T ss_pred ----------------------------------cccccc----------------------------------------
Confidence 000000
Q ss_pred CeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccc
Q 003005 496 AAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIM 575 (858)
Q Consensus 496 a~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a 575 (858)
.....+.++
T Consensus 194 -----------------------------------------------------------------------~~~~~~~~~ 202 (293)
T cd04842 194 -----------------------------------------------------------------------QSDNSDTVA 202 (293)
T ss_pred -----------------------------------------------------------------------ccCCCCccc
Confidence 001124589
Q ss_pred cccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCC-----
Q 003005 576 YYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFP----- 650 (858)
Q Consensus 576 ~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P----- 650 (858)
.||++||+.+ +++||||+|||.+|+++..... .........|..++|||||||+|||++|||+|++|
T Consensus 203 ~~S~~G~~~~-------~~~~pdv~ApG~~i~~~~~~~~-~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 203 SFSSRGPTYD-------GRIKPDLVAPGTGILSARSGGG-GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccCcCCCCC-------CCcCCCEECCCCCeEeccCCCC-CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 9999999986 7999999999999999975421 01111345889999999999999999999999854
Q ss_pred ---CCCHHHHHHHHHcccc
Q 003005 651 ---SFSPSAIASALSTSAT 666 (858)
Q Consensus 651 ---~lsp~~ik~~L~~TA~ 666 (858)
.+++.++|++|++||+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 5667799999999985
No 25
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-42 Score=359.37 Aligned_cols=293 Identities=27% Similarity=0.393 Sum_probs=232.2
Q ss_pred eEEEEEcc-eeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccccCC-----CCCcccCCCc---------ccccccCCCC
Q 003005 119 LKLYSYHY-LINGFSVFVTPQQAEKLSRRREVANVVSDFSVRTATT-----HTPQFLGLPQ---------GAWIQEGGYE 183 (858)
Q Consensus 119 ~~~~~~~~-~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~~~~-----~~~~~~~~~~---------~~w~~~~~~~ 183 (858)
+..+.... +++++.-..+.+.+..++..|-++.++++..++.... +....|++.. ..|...-...
T Consensus 136 ~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~ 215 (501)
T KOG1153|consen 136 KNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEI 215 (501)
T ss_pred ccccccccchhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeec
Confidence 33444444 7888888999999999999999999998877655431 2222234321 1233222223
Q ss_pred CCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCC
Q 003005 184 TAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYAS 263 (858)
Q Consensus 184 ~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~ 263 (858)
..|+||...|+||||+..||||.++.. |.- | ++ ....
T Consensus 216 ~aG~gvtaYv~DTGVni~H~dFegRa~---------wGa-~-----i~----------------------------~~~~ 252 (501)
T KOG1153|consen 216 DAGKGVTAYVLDTGVNIEHPDFEGRAI---------WGA-T-----IP----------------------------PKDG 252 (501)
T ss_pred ccCCCeEEEEeccccccccccccccee---------ccc-c-----cC----------------------------CCCc
Confidence 489999999999999999999998754 311 1 00 0123
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC---------CC
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---------GV 334 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---------g~ 334 (858)
..|++||||||||+|++.. .|||.+++|+++||+.+++.+..++++.++|++++. +.
T Consensus 253 ~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~ 318 (501)
T KOG1153|consen 253 DEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKK 318 (501)
T ss_pred ccccCCCcceeeeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCC
Confidence 4589999999999999874 599999999999999998889999999999999986 47
Q ss_pred CEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-CCCCCCCceEEEeecccCceeeeEEEeCCc
Q 003005 335 DIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-SMSSFSPWIFTVGAASHDRIYTNSIILGNS 413 (858)
Q Consensus 335 ~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~~~~p~vitVgA~~~~~~~~~~~~~~~g 413 (858)
.|.|||+|+.. +-.++.|++.|.+.|+.+++||||+..+.+ +.|+.+.++|||||++..
T Consensus 319 sv~NlSlGg~~--------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~------------ 378 (501)
T KOG1153|consen 319 SVANLSLGGFR--------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN------------ 378 (501)
T ss_pred eEEEEecCCcc--------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc------------
Confidence 89999999864 358999999999999999999999998765 557889999999997522
Q ss_pred eEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHh
Q 003005 414 LTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKN 493 (858)
Q Consensus 414 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~ 493 (858)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCc
Q 003005 494 LSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPK 573 (858)
Q Consensus 494 ~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 573 (858)
+.
T Consensus 379 ------------------------------------------------------------------------------D~ 380 (501)
T KOG1153|consen 379 ------------------------------------------------------------------------------DT 380 (501)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 35
Q ss_pred cccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCC--
Q 003005 574 IMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPS-- 651 (858)
Q Consensus 574 ~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~-- 651 (858)
++.||+||++. ||.|||.+|+|++-+. .+.-.+.||||||+|||||++|.+++.+|.
T Consensus 381 iA~FSN~G~CV-------------diFAPGv~IlSs~iGs--------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~ 439 (501)
T KOG1153|consen 381 IAFFSNWGKCV-------------DIFAPGVNILSSWIGS--------NNATAILSGTSMASPHVAGLAAYFLSLGPLPD 439 (501)
T ss_pred hhhhcCcccee-------------eeecCchhhhhhhhcC--------ccchheeecccccCcchhhhHHHhhhcCCCCh
Confidence 89999999998 8999999999999653 225578999999999999999999998883
Q ss_pred -------CCHHHHHHHHHccccc
Q 003005 652 -------FSPSAIASALSTSATL 667 (858)
Q Consensus 652 -------lsp~~ik~~L~~TA~~ 667 (858)
.+|.++|..+..-..+
T Consensus 440 ~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 440 SSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred HHhhhccCChHHhhhhhhccccc
Confidence 3788888888776653
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-41 Score=367.00 Aligned_cols=148 Identities=32% Similarity=0.470 Sum_probs=110.9
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+||+|||||+|||.+||+|.+... ...+|.. ..
T Consensus 4 ~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------------------------~~~~~~~-------------~~ 40 (297)
T cd07480 4 PFTGAGVRVAVLDTGIDLTHPAFAGRDI------------------------------TTKSFVG-------------GE 40 (297)
T ss_pred CCCCCCCEEEEEcCCCCCCChhhcCCcc------------------------------cCcccCC-------------CC
Confidence 6999999999999999999999997543 0011111 12
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccC
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSIT 342 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G 342 (858)
.+.|..+|||||||||+|+... +...||||+|+|+.+|++.....+...+++++++|+++.|++|||||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G 111 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLG 111 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2457889999999999987542 2346999999999999998756677888999999999999999999999
Q ss_pred CCCCC------CCCCccCCHHHHHHHHH---------------HhCCCEEEEecCCCCCCC
Q 003005 343 PNRRP------PGIATFFNPIDMALLSA---------------AKAGIFVVQAAGNTGPSP 382 (858)
Q Consensus 343 ~~~~~------~~~~~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~ 382 (858)
..... .........++...+.+ .++|++||+||||++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~ 172 (297)
T cd07480 112 ADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRP 172 (297)
T ss_pred CCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCC
Confidence 75411 11111223344444444 679999999999998653
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.7e-41 Score=360.61 Aligned_cols=251 Identities=21% Similarity=0.227 Sum_probs=179.6
Q ss_pred CCCcccccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhh
Q 003005 170 GLPQGAWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASA 249 (858)
Q Consensus 170 ~~~~~~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~ 249 (858)
+++. +|+.. +.+|+||+|+|||+|||.+||||.++... . +
T Consensus 3 ~~~~-aw~~~---~g~G~gV~VaviDtGid~~Hpdl~~~~~~-----~--~----------------------------- 42 (277)
T cd04843 3 NARY-AWTKP---GGSGQGVTFVDIEQGWNLNHEDLVGNGIT-----L--I----------------------------- 42 (277)
T ss_pred ChHH-HHHhc---CCCCCcEEEEEecCCCCCCChhhcccccc-----c--c-----------------------------
Confidence 3344 78764 24589999999999999999999986430 0 0
Q ss_pred hhcCccCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHH
Q 003005 250 ITRGIFNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA 329 (858)
Q Consensus 250 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a 329 (858)
....+.|+++|||||||||+|..+. .++.||||+|+|+.+|++. .++++++|.||
T Consensus 43 ----------~~~~~~d~~gHGT~VAGiIaa~~n~---------~G~~GvAp~a~l~~i~v~~------~~~~~~ai~~A 97 (277)
T cd04843 43 ----------SGLTDQADSDHGTAVLGIIVAKDNG---------IGVTGIAHGAQAAVVSSTR------VSNTADAILDA 97 (277)
T ss_pred ----------CCCCCCCCCCCcchhheeeeeecCC---------CceeeeccCCEEEEEEecC------CCCHHHHHHHH
Confidence 0011457789999999999986421 2357999999999999985 23566777777
Q ss_pred HH----CCCCEEEEccCCCCCCCCC--CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC------------CC-CCC
Q 003005 330 AQ----DGVDIISLSITPNRRPPGI--ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM------------SS-FSP 390 (858)
Q Consensus 330 ~~----~g~~VIN~S~G~~~~~~~~--~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~------------~~-~~p 390 (858)
++ .++.+||||||........ ..+...+.++++++.++|+++|+||||++...... +. ..+
T Consensus 98 ~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~ 177 (277)
T cd04843 98 ADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDS 177 (277)
T ss_pred HhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCC
Confidence 76 3466799999985422110 12344567789999999999999999998753211 11 124
Q ss_pred ceEEEeecccCceeeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEE
Q 003005 391 WIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLI 470 (858)
Q Consensus 391 ~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl 470 (858)
++|+|||++.+
T Consensus 178 ~vI~VgA~~~~--------------------------------------------------------------------- 188 (277)
T cd04843 178 GAIMVGAGSST--------------------------------------------------------------------- 188 (277)
T ss_pred CeEEEEeccCC---------------------------------------------------------------------
Confidence 56666654311
Q ss_pred EEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceE
Q 003005 471 CSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKI 550 (858)
Q Consensus 471 ~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~ 550 (858)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeEEEecccccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecc
Q 003005 551 IKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSG 630 (858)
Q Consensus 551 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sG 630 (858)
....++.||++||.. ||.|||++|+++.............+.|..++|
T Consensus 189 -------------------~~~~~~~fSn~G~~v-------------di~APG~~i~s~~~~~~~~~~~~~~~~~~~~sG 236 (277)
T cd04843 189 -------------------TGHTRLAFSNYGSRV-------------DVYGWGENVTTTGYGDLQDLGGENQDYTDSFSG 236 (277)
T ss_pred -------------------CCCccccccCCCCcc-------------ceEcCCCCeEecCCCCcccccCCCCcceeeecc
Confidence 001268899999976 899999999999865432111223334578999
Q ss_pred cCchhHHHHHHHHHHHH----h-CCCCCHHHHHHHHHcccc
Q 003005 631 TSMAAPHIAGLAALIKQ----K-FPSFSPSAIASALSTSAT 666 (858)
Q Consensus 631 TSMAaP~VAG~aALl~q----~-~P~lsp~~ik~~L~~TA~ 666 (858)
||||||||||++|||++ + +|+|+|+|||++|++|+.
T Consensus 237 TS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 237 TSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred cchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99999999999999975 3 499999999999999974
No 28
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-41 Score=353.80 Aligned_cols=241 Identities=31% Similarity=0.446 Sum_probs=191.9
Q ss_pred cEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 189 VVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 189 v~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
|+|||||+|||++||+|.+... ....| ++.. +...+.|..
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~-----~~~~~-----------------------~~~~------------~~~~~~~~~ 40 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPK-----LVPGW-----------------------NFVS------------NNDPTSDID 40 (242)
T ss_pred CEEEEecCCCCCCChhhccCcC-----ccCCc-----------------------cccC------------CCCCCCCCC
Confidence 6899999999999999998421 11111 1110 112345788
Q ss_pred CCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCCC
Q 003005 269 GHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRPP 348 (858)
Q Consensus 269 gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 348 (858)
+|||||||||+|+..+. ..+.||||+|+|+.+|++.....+...++.++++|+++.+++|||||||.....
T Consensus 41 ~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~- 111 (242)
T cd07498 41 GHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDST- 111 (242)
T ss_pred CCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC-
Confidence 99999999999975322 346799999999999999875556788999999999999999999999975432
Q ss_pred CCCccCCHHHHHHHHHHh-CCCEEEEecCCCCCCCCCCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCCCc
Q 003005 349 GIATFFNPIDMALLSAAK-AGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGTDK 427 (858)
Q Consensus 349 ~~~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (858)
..+...++.+++.+.. +|++||+||||+|......|+..+++|+|||++..
T Consensus 112 --~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 163 (242)
T cd07498 112 --ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN-------------------------- 163 (242)
T ss_pred --chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC--------------------------
Confidence 2345678888888888 99999999999998877778889999999986422
Q ss_pred eeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 428 MYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 428 ~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCCCC
Q 003005 508 IGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPEDS 587 (858)
Q Consensus 508 ~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~~~ 587 (858)
+.++.||++||..
T Consensus 164 ----------------------------------------------------------------~~~~~~s~~g~~~--- 176 (242)
T cd07498 164 ----------------------------------------------------------------DARASYSNYGNYV--- 176 (242)
T ss_pred ----------------------------------------------------------------CCccCcCCCCCCe---
Confidence 2357789999976
Q ss_pred CCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 003005 588 FLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (858)
Q Consensus 588 ~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 664 (858)
|++|||.++++....... .....++.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 177 ----------~~~apG~~~~~~~~~~~~-~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 177 ----------DLVAPGVGIWTTGTGRGS-AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ----------EEEeCcCCcccCCccccc-cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999888543211 111245688999999999999999999999999999999999999976
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.3e-40 Score=350.65 Aligned_cols=253 Identities=30% Similarity=0.403 Sum_probs=191.9
Q ss_pred CCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCC
Q 003005 187 EGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFD 266 (858)
Q Consensus 187 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d 266 (858)
+||+|||||||||++||+|.++.+.... ...+.+....+..+.. . ...++| ......+.|
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~--~~~~~~~~~~~~~~~~-----~-~~~~~~------------~~~~~~~~d 61 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPG--EIPGNGIDDDGNGYVD-----D-IYGWNF------------VNNDNDPMD 61 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcc--cccccCcccCCCCccc-----C-CCcccc------------cCCCCCCCC
Confidence 6899999999999999999987541100 0011111111111100 0 011111 112345678
Q ss_pred CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCC
Q 003005 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRR 346 (858)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~ 346 (858)
..+|||||||||+|..... ..+.||||+|+|+.+|++.....+...+++++++++++.+++|||+|||....
T Consensus 62 ~~~HGT~va~ii~~~~~~~--------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~ 133 (259)
T cd07473 62 DNGHGTHVAGIIGAVGNNG--------IGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP 133 (259)
T ss_pred CCCcHHHHHHHHHCcCCCC--------CceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Confidence 8999999999999975432 23579999999999999987555888899999999999999999999997532
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCC---CCCCC--CCCceEEEeecccCceeeeEEEeCCceEEEeeec
Q 003005 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP---KSMSS--FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (858)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 421 (858)
...+.++++.+.++|++||+||||++... ..+|+ ..+++|+||+++..
T Consensus 134 -------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------- 186 (259)
T cd07473 134 -------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------- 186 (259)
T ss_pred -------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------
Confidence 46788889999999999999999998762 23443 24678888875321
Q ss_pred CCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEE
Q 003005 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (858)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 501 (858)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccC
Q 003005 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (858)
Q Consensus 502 ~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 581 (858)
+.++.||++|
T Consensus 187 ----------------------------------------------------------------------~~~~~~s~~g 196 (259)
T cd07473 187 ----------------------------------------------------------------------DALASFSNYG 196 (259)
T ss_pred ----------------------------------------------------------------------CCcCcccCCC
Confidence 2356689998
Q ss_pred CCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003005 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASAL 661 (858)
Q Consensus 582 Pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L 661 (858)
|.. ||+.|||.++++.. ..+.|..++|||||||+|||++|||+|++|.+++++||++|
T Consensus 197 ~~~------------~~~~apG~~~~~~~----------~~~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L 254 (259)
T cd07473 197 KKT------------VDLAAPGVDILSTS----------PGGGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAI 254 (259)
T ss_pred CCC------------cEEEeccCCeEecc----------CCCcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 754 49999999999966 45689999999999999999999999999999999999999
Q ss_pred Hcccc
Q 003005 662 STSAT 666 (858)
Q Consensus 662 ~~TA~ 666 (858)
++||+
T Consensus 255 ~~tA~ 259 (259)
T cd07473 255 LSSAD 259 (259)
T ss_pred HHhCC
Confidence 99985
No 30
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-40 Score=347.74 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=120.6
Q ss_pred CCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCC
Q 003005 186 GEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPF 265 (858)
Q Consensus 186 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 265 (858)
+++|+|||||||||++||+|+++.. ..++|.... .+.....+...
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~------------------------------~~~~~~~~~-----~~~~~~~~~~~ 46 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII------------------------------GGKSFSPYE-----GDGNKVSPYYV 46 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc------------------------------cCCCCCCCC-----CCcccCCCCCC
Confidence 6899999999999999999998633 011111100 00000112224
Q ss_pred CCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC------CCCHHHHHHHHHHHHHCCCCEEEE
Q 003005 266 DGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF------GGFAADVVAAIDQAAQDGVDIISL 339 (858)
Q Consensus 266 d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~------~~~~~~i~~ai~~a~~~g~~VIN~ 339 (858)
|..||||||||||+ |+||+|+|+.+|+++... .+....+++||+||+++|+|||||
T Consensus 47 d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~ 108 (247)
T cd07491 47 SADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISM 108 (247)
T ss_pred CCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEe
Confidence 68899999999996 899999999999998643 245678999999999999999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC-C--CCCCCCceEEEeecc
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK-S--MSSFSPWIFTVGAAS 399 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~~p~vitVgA~~ 399 (858)
|||....... ......+.+++++|.++|++||+||||++.... . .|+..++||+|||++
T Consensus 109 S~g~~~~~~~-~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~ 170 (247)
T cd07491 109 SWTIKKPEDN-DNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAAD 170 (247)
T ss_pred eeeccccccc-ccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeC
Confidence 9997543110 123578899999999999999999999998754 3 356688999999865
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=9.7e-40 Score=342.06 Aligned_cols=227 Identities=35% Similarity=0.557 Sum_probs=187.7
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||+||+.+||+|.+... ..++|... ......|.
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~------------------------------~~~~~~~~-----------~~~~~~~~ 39 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIV------------------------------GGANFTGD-----------DNNDYQDG 39 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcccc------------------------------CcccccCC-----------CCCCCCCC
Confidence 79999999999999999997533 11111111 00234577
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||||++.... ..+.|+||+|+|+.+|+++....+...+++++++|+++.|++|||||||...
T Consensus 40 ~~HGT~vA~ii~~~~~~---------~~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~-- 108 (229)
T cd07477 40 NGHGTHVAGIIAALDNG---------VGVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS-- 108 (229)
T ss_pred CCCHHHHHHHHhcccCC---------CccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC--
Confidence 89999999999987532 1457999999999999998755577789999999999999999999999743
Q ss_pred CCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC--CCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCCCC
Q 003005 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM--SSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAPGT 425 (858)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (858)
....+..+++.+.++|++||+||||++...... |+..+++|+||+++.+
T Consensus 109 -----~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 159 (229)
T cd07477 109 -----DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------ 159 (229)
T ss_pred -----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC------------------------
Confidence 235678888899999999999999999876654 8889999999986422
Q ss_pred CceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECC
Q 003005 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDP 505 (858)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 505 (858)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCCCC
Q 003005 506 FVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPDPE 585 (858)
Q Consensus 506 ~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt~~ 585 (858)
+.++.||++|+..
T Consensus 160 ------------------------------------------------------------------~~~~~~s~~g~~~- 172 (229)
T cd07477 160 ------------------------------------------------------------------NNRASFSSTGPEV- 172 (229)
T ss_pred ------------------------------------------------------------------CCcCCccCCCCCc-
Confidence 1256689999865
Q ss_pred CCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHcc
Q 003005 586 DSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSTS 664 (858)
Q Consensus 586 ~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~T 664 (858)
|+.|||.+|+++. ..+.|..++|||||||+|||++|||+|++|+++|++||++|++|
T Consensus 173 ------------~~~apg~~i~~~~----------~~~~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 173 ------------ELAAPGVDILSTY----------PNNDYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ------------eEEeCCCCeEEec----------CCCCEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 8999999999988 45689999999999999999999999999999999999999976
No 32
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=7.4e-40 Score=356.30 Aligned_cols=155 Identities=30% Similarity=0.378 Sum_probs=110.3
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
.|+|||||||||++||+|.+....... .+. .. ..+.. .......+.....|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~----~~~----~~---------------~~~~~-----~~~~~~~~~~~~~d~ 52 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK----NLV----PK---------------GGYDG-----KEAGETGDINDIVDK 52 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc----ccc----cC---------------CCcCC-----ccccccCCCCcCCCC
Confidence 389999999999999999975430000 000 00 00000 000111122345678
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||+|+|+.+ ..||||+|+|+.+|+++........+++++|+||++++++|||||||.....
T Consensus 53 ~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~ 120 (294)
T cd07482 53 LGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLII 120 (294)
T ss_pred CCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCC
Confidence 9999999999998742 2499999999999999874445788999999999999999999999975433
Q ss_pred CCC----CccCCHHHHHHHHHHhCCCEEEEecCCCCCCC
Q 003005 348 PGI----ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSP 382 (858)
Q Consensus 348 ~~~----~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~ 382 (858)
... ....+.+.++++.+.++|++||+||||+|...
T Consensus 121 ~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 121 GGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred CcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 211 22335677888889999999999999999753
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=3.8e-40 Score=356.34 Aligned_cols=276 Identities=36% Similarity=0.578 Sum_probs=208.8
Q ss_pred EEEEeccCcCCCCCCCC-CCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCCC
Q 003005 190 VIGFIDTGIDPTHPSFA-DDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDGD 268 (858)
Q Consensus 190 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~~ 268 (858)
+|||||||||++||+|. ++.. ..++.+.+.|.++. .......|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~-------------------------~~~~~~~~~~~~~~---------~~~~~~~~~~ 46 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFI-------------------------WSKVPGGYNFVDGN---------PNPSPSDDDN 46 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEE-------------------------EEEEEEEEETTTTB---------STTTSSSTSS
T ss_pred CEEEEcCCcCCCChhHccCCcc-------------------------cccccceeeccCCC---------CCcCccccCC
Confidence 69999999999999999 4322 12344455555431 1123446788
Q ss_pred CCcccchhhhccCC-CCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH-HCCCCEEEEccCCCCC
Q 003005 269 GHGSHTASVAAGNH-GIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSITPNRR 346 (858)
Q Consensus 269 gHGThVAGiiag~~-~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~VIN~S~G~~~~ 346 (858)
+|||||||||+|.. .+. ....|+||+|+|+.+|++... +....+++.++++++ +.+++|||||||....
T Consensus 47 ~HGT~va~ii~~~~~~~~--------~~~~Gva~~a~l~~~~i~~~~-~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 47 GHGTHVAGIIAGNGGNNG--------PGINGVAPNAKLYSYKIFDNS-GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp SHHHHHHHHHHHTTSSSS--------SSETCSSTTSEEEEEECSSTT-SEEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred Cccchhhhhccccccccc--------ccccccccccccccccccccc-ccccccccchhhhhhhccCCcccccccccccc
Confidence 99999999999985 211 245799999999999998763 377888999999999 8999999999987321
Q ss_pred CCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCC---CCCCCCCceEEEeecccCceeeeEEEeCCceEEEeeecCC
Q 003005 347 PPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASHDRIYTNSIILGNSLTISGVGLAP 423 (858)
Q Consensus 347 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (858)
.. .....+.+..+++.+.++|+++|+||||++.... ..|+..+++|+||+++..
T Consensus 118 ~~-~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~---------------------- 174 (282)
T PF00082_consen 118 PP-DPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN---------------------- 174 (282)
T ss_dssp SS-HSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT----------------------
T ss_pred cc-ccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc----------------------
Confidence 11 0123345667788899999999999999987654 356667888999875421
Q ss_pred CCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEE
Q 003005 424 GTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYM 503 (858)
Q Consensus 424 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n 503 (858)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCC
Q 003005 504 DPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583 (858)
Q Consensus 504 ~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt 583 (858)
+.++.||++|+.
T Consensus 175 --------------------------------------------------------------------~~~~~~s~~g~~ 186 (282)
T PF00082_consen 175 --------------------------------------------------------------------GQPASYSNYGGP 186 (282)
T ss_dssp --------------------------------------------------------------------SSBSTTSSBSTT
T ss_pred --------------------------------------------------------------------cccccccccccc
Confidence 135778999766
Q ss_pred CCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHHHHc
Q 003005 584 PEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALST 663 (858)
Q Consensus 584 ~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~L~~ 663 (858)
... +++||||+|||.+|.++++... ...|..++|||||||+|||++|||+|++|+|++++||.+|++
T Consensus 187 ~~~------~~~~~di~a~G~~i~~~~~~~~-------~~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ 253 (282)
T PF00082_consen 187 SDD------GRIKPDIAAPGGNILSAVPGSD-------RGSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLIN 253 (282)
T ss_dssp ETT------CTTCEEEEEECSSEEEEETTTE-------SEEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred ccc------cccccccccccccccccccccc-------cccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 532 7999999999999998884321 135888999999999999999999999999999999999999
Q ss_pred cccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC
Q 003005 664 SATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD 708 (858)
Q Consensus 664 TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 708 (858)
||.++...+ ....+..||||+||+.+|++
T Consensus 254 ta~~~~~~~----------------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 254 TADDLGSTN----------------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HSBESSETT----------------SSSSHHHHTTSBE-HHHHHH
T ss_pred hCcccCcCC----------------CCCCCCCccCChhCHHHHhC
Confidence 999886221 12335578999999999873
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-39 Score=333.84 Aligned_cols=151 Identities=25% Similarity=0.237 Sum_probs=117.5
Q ss_pred CcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCCCCC
Q 003005 188 GVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASPFDG 267 (858)
Q Consensus 188 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 267 (858)
||+|||||||||++||+|.+... .+. .+..+ +...+.....|.
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~--------~~~----------------------~~~~~-------~~~~~~~~~~d~ 43 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL--------DGE----------------------VTIDL-------EIIVVSAEGGDK 43 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc--------ccc----------------------ccccc-------ccccCCCCCCCC
Confidence 79999999999999999998644 000 00000 000112344578
Q ss_pred CCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEEccCCCCCC
Q 003005 268 DGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISLSITPNRRP 347 (858)
Q Consensus 268 ~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~ 347 (858)
.+|||||||||+ +.+|+++|+.+|+++....+..+++++|++|+++++++|||||||.....
T Consensus 44 ~gHGT~vAgiia------------------~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~ 105 (222)
T cd07492 44 DGHGTACAGIIK------------------KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR 105 (222)
T ss_pred CCcHHHHHHHHH------------------ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC
Confidence 899999999998 44699999999999875557888999999999999999999999975421
Q ss_pred CCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCCCceEEEeecc
Q 003005 348 PGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSFSPWIFTVGAAS 399 (858)
Q Consensus 348 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgA~~ 399 (858)
....+..+++++.++|+++|+||||++.... .|+..++||+||+.+
T Consensus 106 -----~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~ 151 (222)
T cd07492 106 -----DFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDT 151 (222)
T ss_pred -----cCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecC
Confidence 2356788889999999999999999987543 378889999999753
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.3e-39 Score=349.92 Aligned_cols=249 Identities=24% Similarity=0.263 Sum_probs=177.5
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+||+|||||||||++||+|.+... .. ..++|...
T Consensus 31 ~w~~----g~~G~gv~VaViDtGv~~~h~~l~~~~~-----~~-----------------------~~~~~~~~------ 72 (297)
T cd04059 31 AWEQ----GITGKGVTVAVVDDGLEITHPDLKDNYD-----PE-----------------------ASYDFNDN------ 72 (297)
T ss_pred HHhC----CCCCcceEEEEEeCCcccCCHhHhhccc-----cc-----------------------ccccccCC------
Confidence 6665 7999999999999999999999997643 00 11111111
Q ss_pred cCCCCCCCCC--CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC
Q 003005 255 FNSSQDYASP--FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD 332 (858)
Q Consensus 255 ~~~~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~ 332 (858)
.....+ .|..+|||||||||+|+.... ....||||+|+|+.+|++... ........++.++.+
T Consensus 73 ----~~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~~~~~~- 137 (297)
T cd04059 73 ----DPDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD--VTDVVEAESLGLNPD- 137 (297)
T ss_pred ----CCCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc--cccHHHHHHHhcccC-
Confidence 001122 277899999999999985321 134799999999999998763 233344555555544
Q ss_pred CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHh-----CCCEEEEecCCCCCCCC----CCCCCCCceEEEeecccCce
Q 003005 333 GVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPSPK----SMSSFSPWIFTVGAASHDRI 403 (858)
Q Consensus 333 g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~----~~~~~~p~vitVgA~~~~~~ 403 (858)
.++|||||||..............+..+++.+.. +|++||+||||+|.... ..++..+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 4699999999764332111223345555555554 69999999999998322 122456788888886422
Q ss_pred eeeEEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcch
Q 003005 404 YTNSIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLST 483 (858)
Q Consensus 404 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~ 483 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEeccc
Q 003005 484 IKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGL 563 (858)
Q Consensus 484 ~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 563 (858)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCccccccccCCCCCCCCCCCcCcCCCcccCCCce-------EEeeccCCCCCCccccCccceeecccCchhH
Q 003005 564 KANFSNSAPKIMYYSARGPDPEDSFLDDADIMKPNLVAPGNS-------IWAAWSSLGTDSVEFQGESFAMMSGTSMAAP 636 (858)
Q Consensus 564 ~~~~~~~~~~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~-------I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP 636 (858)
+.++.||++|+.. +++|||.. |+++.... ..+.|..++|||||||
T Consensus 216 --------g~~~~~s~~g~~~-------------~~~a~g~~~~~~~~~i~~~~~~~-------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 216 --------GVRASYSEVGSSV-------------LASAPSGGSGNPEASIVTTDLGG-------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred --------CCCcCCCCCCCcE-------------EEEecCCCCCCCCCceEeCCCCC-------CCCcccccCCcchhhh
Confidence 2356788888876 68888877 76665321 1246789999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHcccc
Q 003005 637 HIAGLAALIKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 637 ~VAG~aALl~q~~P~lsp~~ik~~L~~TA~ 666 (858)
+|||++|||+|++|+|++.|||.+|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=6.4e-38 Score=335.97 Aligned_cols=247 Identities=38% Similarity=0.455 Sum_probs=188.6
Q ss_pred CCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCCCC
Q 003005 185 AGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYASP 264 (858)
Q Consensus 185 ~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~~~ 264 (858)
+|+||+|||||+||+.+||+|.+...... ...+ .........
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---~~~~-----------------------------------~~~~~~~~~ 42 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---YYVA-----------------------------------VNDAGYASN 42 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---cccc-----------------------------------cccccCCCC
Confidence 69999999999999999999998654000 0000 000001234
Q ss_pred CCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCC-CCCHHHHHHHHHHHHHCCCCEEEEccCC
Q 003005 265 FDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSF-GGFAADVVAAIDQAAQDGVDIISLSITP 343 (858)
Q Consensus 265 ~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~~i~~ai~~a~~~g~~VIN~S~G~ 343 (858)
.|..+|||||||||+|+... ....|+||+|+|+.+|+++... ......+.++++++++.+++|||||||.
T Consensus 43 ~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 43 GDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 56789999999999998542 3457999999999999998744 4566778999999999999999999998
Q ss_pred CCCCCCC--------CccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCC---------CCCCCceEEEeecccCceeee
Q 003005 344 NRRPPGI--------ATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSM---------SSFSPWIFTVGAASHDRIYTN 406 (858)
Q Consensus 344 ~~~~~~~--------~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~~p~vitVgA~~~~~~~~~ 406 (858)
....... ......+..+++.+.++|++||+||||++...... ++..+++|+||+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---- 189 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---- 189 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----
Confidence 6533210 12456778888899999999999999998754332 23456788888765321
Q ss_pred EEEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHH
Q 003005 407 SIILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQ 486 (858)
Q Consensus 407 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~ 486 (858)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccc
Q 003005 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKAN 566 (858)
Q Consensus 487 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 566 (858)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccc--ccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHH
Q 003005 567 FSNSAPKIMY--YSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAAL 644 (858)
Q Consensus 567 ~~~~~~~~a~--fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aAL 644 (858)
.... ||++|+... .++++|||.+|+++.+. ....|..++|||||||+|||++||
T Consensus 190 ------~~~~~~~s~~~~~~~----------~~~~~apG~~i~~~~~~--------~~~~~~~~~GTS~Aap~vaG~~Al 245 (267)
T cd04848 190 ------TIASYSYSNRCGVAA----------NWCLAAPGENIYSTDPD--------GGNGYGRVSGTSFAAPHVSGAAAL 245 (267)
T ss_pred ------Ccccccccccchhhh----------hheeecCcCceeecccC--------CCCcccccceeEchHHHHHHHHHH
Confidence 1222 477776543 33799999999998742 144788999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHcccc
Q 003005 645 IKQKFPSFSPSAIASALSTSAT 666 (858)
Q Consensus 645 l~q~~P~lsp~~ik~~L~~TA~ 666 (858)
|+|++|+++++|||++|++||+
T Consensus 246 ~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 246 LAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=326.99 Aligned_cols=287 Identities=23% Similarity=0.328 Sum_probs=220.2
Q ss_pred CCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCC
Q 003005 180 GGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQ 259 (858)
Q Consensus 180 ~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~ 259 (858)
|.+|++|++|+|||.|||+.-+||.|+.--- ...| .+
T Consensus 194 Wk~GyTGa~VkvAiFDTGl~~~HPHFrnvKE------RTNW-------------------------TN------------ 230 (1033)
T KOG4266|consen 194 WKKGYTGAKVKVAIFDTGLRADHPHFRNVKE------RTNW-------------------------TN------------ 230 (1033)
T ss_pred HhccccCCceEEEEeecccccCCccccchhh------hcCC-------------------------cC------------
Confidence 4459999999999999999999999995211 1122 11
Q ss_pred CCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q 003005 260 DYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGVDIISL 339 (858)
Q Consensus 260 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~~VIN~ 339 (858)
...-.|.-||||.|||+|||.. ...|.||+++|+++|||.+..-.+.+++++|+.||+...+||+|+
T Consensus 231 -E~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNL 297 (1033)
T KOG4266|consen 231 -EDTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNL 297 (1033)
T ss_pred -ccccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEee
Confidence 1334578899999999999874 346999999999999998855588999999999999999999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCC--CCceEEEeecccCceeeeEEEeCCceEEE
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSSF--SPWIFTVGAASHDRIYTNSIILGNSLTIS 417 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~--~p~vitVgA~~~~~~~~~~~~~~~g~~~~ 417 (858)
|+|++ ++...++-+-+-.+...++++|.|+||+|+-..+..++ -..||.||..
T Consensus 298 SIGGP------DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------- 352 (1033)
T KOG4266|consen 298 SIGGP------DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------- 352 (1033)
T ss_pred ccCCc------ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccc-------------------
Confidence 99986 34556777777788899999999999999965544322 2244444432
Q ss_pred eeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCe
Q 003005 418 GVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAA 497 (858)
Q Consensus 418 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~ 497 (858)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccc
Q 003005 498 GIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYY 577 (858)
Q Consensus 498 g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~f 577 (858)
+-.+.++.|
T Consensus 353 -----------------------------------------------------------------------dfdD~IA~F 361 (1033)
T KOG4266|consen 353 -----------------------------------------------------------------------DFDDHIASF 361 (1033)
T ss_pred -----------------------------------------------------------------------cccchhhhh
Confidence 112569999
Q ss_pred cccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----hCCCCC
Q 003005 578 SARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFS 653 (858)
Q Consensus 578 SS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~ls 653 (858)
||||-+... -+..-||+||||++.|.+|..+.. .++...+||||.|+|.|||+++||.+ +.--++
T Consensus 362 SSRGMtTWE-LP~GYGRmkpDiVtYG~~v~GS~v----------~~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~N 430 (1033)
T KOG4266|consen 362 SSRGMTTWE-LPHGYGRMKPDIVTYGRDVMGSKV----------STGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLN 430 (1033)
T ss_pred ccCCcceee-cCCcccccCCceEeeccccccCcc----------cccchhccCCcccchhhhceeeeEeeeheehhhccC
Confidence 999975431 233448999999999999987653 34678899999999999999999976 333469
Q ss_pred HHHHHHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCC------CCeeeeCCcchhhhhcccc
Q 003005 654 PSAIASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLD------PGLVFDASYNDYMSFLCGI 727 (858)
Q Consensus 654 p~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~------~~~v~~~~~~~~~~~~~~~ 727 (858)
|+.+|.+|+..|.+++..+- +.||+|++|+.++++ |...+-+++.||....-.+
T Consensus 431 PASmKQaLiegA~kLpg~NM--------------------fEQGaGkldLL~syqiL~SYkP~asl~PsylD~t~cpYmW 490 (1033)
T KOG4266|consen 431 PASMKQALIEGAAKLPGPNM--------------------FEQGAGKLDLLESYQILKSYKPRASLFPSYLDYTDCPYMW 490 (1033)
T ss_pred HHHHHHHHHhHHhhCCCCch--------------------hhccCcchhHHHHHHHHHhcCCCceecchhcccccCcccC
Confidence 99999999999999875432 589999999998874 5555555555555433344
Q ss_pred CC
Q 003005 728 NG 729 (858)
Q Consensus 728 ~~ 729 (858)
++
T Consensus 491 Py 492 (1033)
T KOG4266|consen 491 PY 492 (1033)
T ss_pred cc
Confidence 44
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-35 Score=330.89 Aligned_cols=368 Identities=22% Similarity=0.307 Sum_probs=232.3
Q ss_pred CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCC--CCHHHHHHHHHHHHHCCCCEEEEccCCC
Q 003005 267 GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFG--GFAADVVAAIDQAAQDGVDIISLSITPN 344 (858)
Q Consensus 267 ~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~--~~~~~i~~ai~~a~~~g~~VIN~S~G~~ 344 (858)
..-||||||||++|+.... ....||||+|+|+++++.+...+ -+...+.+|+..++++++||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3569999999999997533 23569999999999999876444 2334689999999999999999999988
Q ss_pred CCCCCCCccCCHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCC---CCCceEEEeecccCceeeeEEEeCCceEEEeeec
Q 003005 345 RRPPGIATFFNPIDMALLSAAKAGIFVVQAAGNTGPSPKSMSS---FSPWIFTVGAASHDRIYTNSIILGNSLTISGVGL 421 (858)
Q Consensus 345 ~~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~~~g~~~~~~~~ 421 (858)
..+++.. +.++.+-+.+.+.|+++|.||||.|+.-.++++ ....+|.|||........
T Consensus 381 a~~pn~G---RviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~---------------- 441 (1304)
T KOG1114|consen 381 AHLPNSG---RVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ---------------- 441 (1304)
T ss_pred CCCCCcc---hHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH----------------
Confidence 7776543 333333344557899999999999998776653 355899999853221100
Q ss_pred CCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEE
Q 003005 422 APGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVF 501 (858)
Q Consensus 422 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~ 501 (858)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCCccccccccC
Q 003005 502 YMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARG 581 (858)
Q Consensus 502 ~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G 581 (858)
+.... ...-.+.+..+||||
T Consensus 442 ------------------------------a~y~~------------------------------~e~vp~~~YtWsSRg 461 (1304)
T KOG1114|consen 442 ------------------------------AEYSV------------------------------REPVPSNPYTWSSRG 461 (1304)
T ss_pred ------------------------------hhhhh------------------------------hccCCCCccccccCC
Confidence 00000 001113477899999
Q ss_pred CCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCccceeecccCchhHHHHHHHHHHHH----hCCCCCHHHH
Q 003005 582 PDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGESFAMMSGTSMAAPHIAGLAALIKQ----KFPSFSPSAI 657 (858)
Q Consensus 582 Pt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q----~~P~lsp~~i 657 (858)
|+.| |-+--.|+|||+.|.|- |.+ .-..-..|+|||||+|+++|++|||++ .+-.|||.-|
T Consensus 462 P~~D-------G~lGVsi~APggAiAsV-P~~-------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysV 526 (1304)
T KOG1114|consen 462 PCLD-------GDLGVSISAPGGAIASV-PQY-------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSV 526 (1304)
T ss_pred CCcC-------CCcceEEecCCccccCC-chh-------hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHH
Confidence 9998 78888999999999664 222 112446799999999999999999976 5668999999
Q ss_pred HHHHHccccccccCCCccccccccCCCCCCCCCCCCCccccccccccccCCCCeeeeCCcchhhhhccccCCCcceeeec
Q 003005 658 ASALSTSATLYDKNGGPIMAQRAYAKPDENQSPATPFDMGSGFVNATASLDPGLVFDASYNDYMSFLCGINGSSPVVLNY 737 (858)
Q Consensus 658 k~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~~ 737 (858)
|.+|++||.+++.. .++.||.|++++.+|.+-=.-.+-.+..-+.| |.-.
T Consensus 527 rrAlenTa~~l~~i--------------------d~faqG~GmlqVdkAyEyL~q~~~~f~~~l~f----------~~v~ 576 (1304)
T KOG1114|consen 527 RRALENTATKLGDI--------------------DSFAQGQGMLQVDKAYEYLAQSDFSFPNALGF----------INVN 576 (1304)
T ss_pred HHHHHhcccccCcc--------------------chhccCcceeehhHHHHHHHHhhhcCCcccee----------EEEe
Confidence 99999999988643 25789999999999985200000000011111 1111
Q ss_pred cCcccccCCCCCCCCCCCCCe-EEEeecCcceEEEEEEEE-cCC---CceEEEEeecCCcc-eEEEeecEEEEeCCCEEE
Q 003005 738 TGQNCWAYNSTISGADLNLPS-ITIARLNQSRTVQRTLTN-IAG---NETYSVGWSAPYGV-SMKVSPTHFSIASGEKQV 811 (858)
Q Consensus 738 ~~~~~~~~~~~~~~~~~n~~s-i~~~~~~~~~~~~~tv~n-~~~---~~ty~~~~~~~~~~-~v~~~p~~~tl~~g~s~~ 811 (858)
.|.+|.-+--...+-..+.|+ .++. +.-.+.| .++ ...|.+...-.... .|+ .|+.+-| .++.|.
T Consensus 577 VgN~~srGIyLRep~~~~~p~e~~i~-------VePiF~~~~e~~keki~Fe~~L~L~st~pwVq-~p~~l~l-~~~~R~ 647 (1304)
T KOG1114|consen 577 VGNSCSRGIYLREPTQVCSPSEHTIG-------VEPIFENGEENEKEKISFEVQLSLASTQPWVQ-CPEYLML-ANQGRG 647 (1304)
T ss_pred eccccccceEecCCcccCCcccccee-------ccccccCccccccccccceeeEeeecCCccee-Cchhhee-ccCCce
Confidence 122221100001111111110 0110 0001111 010 12222222111111 333 3766666 788999
Q ss_pred EEEEEEEecCCCCeEE----EEEEEEeCCccEEEEeEEEEEEeecccc
Q 003005 812 LNVFFNATTSGTAASF----GRIGLFGNQGHIVNIPLSVVARLSYNAT 855 (858)
Q Consensus 812 ~~v~~~~~~~~~~~~~----G~i~~~~~~~~~l~iP~~~~~~~~~~~~ 855 (858)
|.|.+++.......++ ||-.-..+.++..+||+.+....+-.++
T Consensus 648 i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P~~v~~~ 695 (1304)
T KOG1114|consen 648 INVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKPKVVAND 695 (1304)
T ss_pred eEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEccccccCC
Confidence 9999998877655444 4444445678999999998777655544
No 39
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-32 Score=288.26 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=86.0
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHH--HHCCCCEEEEcc
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQA--AQDGVDIISLSI 341 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a--~~~g~~VIN~S~ 341 (858)
..|.++|||||||||||.. |++|+|+|+..++... ..+.+.++++|+ .+.+++||||||
T Consensus 33 ~~~~~~HGThVAgiiag~~---------------~~~p~a~~~~~~~~~~----~~~~~~~~i~~~~~~~~gv~VINmS~ 93 (247)
T cd07488 33 NNTFDDHATLVASIMGGRD---------------GGLPAVNLYSSAFGIK----SNNGQWQECLEAQQNGNNVKIINHSY 93 (247)
T ss_pred CCCCCCHHHHHHHHHHhcc---------------CCCCccceehhhhCCC----CCCccHHHHHHHHHhcCCceEEEeCC
Confidence 3478999999999999873 6779999987554322 223456677777 567999999999
Q ss_pred CCCCCCCCC--CccCCHHHHHHHHHHhC-CCEEEEecCCCCCCC-----CCCCCCCCceEEEeecccC
Q 003005 342 TPNRRPPGI--ATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSP-----KSMSSFSPWIFTVGAASHD 401 (858)
Q Consensus 342 G~~~~~~~~--~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~~p~vitVgA~~~~ 401 (858)
|........ ......+..+++.+.++ |+++|+||||+|... ...|+..+++|+|||++..
T Consensus 94 G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~ 161 (247)
T cd07488 94 GEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRN 161 (247)
T ss_pred ccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCC
Confidence 976433210 01234577778777766 999999999999853 2345677899999997643
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=1.8e-30 Score=272.86 Aligned_cols=123 Identities=36% Similarity=0.524 Sum_probs=101.7
Q ss_pred CCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH-HCCCCEEEEccC
Q 003005 264 PFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA-QDGVDIISLSIT 342 (858)
Q Consensus 264 ~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~-~~g~~VIN~S~G 342 (858)
..+..+||||||++|++..... ...|+||+++|+.+|+...........+++++++++ +.+++|||||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g 110 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG 110 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCC
Confidence 4467899999999999885432 126999999999999988744467888999999999 899999999999
Q ss_pred CCCCCCCCCccCCHHHHHHHHHHhC-CCEEEEecCCCCCCCC---CCCCCCCceEEEeeccc
Q 003005 343 PNRRPPGIATFFNPIDMALLSAAKA-GIFVVQAAGNTGPSPK---SMSSFSPWIFTVGAASH 400 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgA~~~ 400 (858)
..... ....+..++..+.++ |+++|+||||.+.... ..++..+++|+||+++.
T Consensus 111 ~~~~~-----~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~ 167 (241)
T cd00306 111 GPGSP-----PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDR 167 (241)
T ss_pred CCCCC-----CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCc
Confidence 86432 235677788888888 9999999999998776 47788999999998653
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.5e-23 Score=239.36 Aligned_cols=248 Identities=31% Similarity=0.486 Sum_probs=183.6
Q ss_pred CCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCccCCCCCCC
Q 003005 183 ETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSQDYA 262 (858)
Q Consensus 183 ~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~~~~~~~~~ 262 (858)
+++|+|++|+|||+||+..||+|.+..... ++|... ....
T Consensus 138 ~~~g~gv~~~vid~gv~~~~~~~~~~~~~~------------------------------~~~~~~----------~~~~ 177 (508)
T COG1404 138 GLTGKGVTVAVIDTGVDASHPDLAGSAVAG------------------------------GDFVDG----------DPEP 177 (508)
T ss_pred CCCCCCeEEEEeccCCCCCChhhhcccccc------------------------------cccccC----------CCCC
Confidence 689999999999999999999999864400 111111 0001
Q ss_pred CCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCC-CCCCHHHHHHHHHHHHHCC--CCEEEE
Q 003005 263 SPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKS-FGGFAADVVAAIDQAAQDG--VDIISL 339 (858)
Q Consensus 263 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~-~~~~~~~i~~ai~~a~~~g--~~VIN~ 339 (858)
...|..+|||||+|++++.... +.....|++|+++++.++++... ..+...+++.+++++++.+ +++|||
T Consensus 178 ~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~ 250 (508)
T COG1404 178 PFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINL 250 (508)
T ss_pred CCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEe
Confidence 2468899999999999984200 01235799999999999999875 4477788899999999999 999999
Q ss_pred ccCCCCCCCCCCccCCHHHHHHHHHHhCC-CEEEEecCCCCCCCC----CCCCCCC--ceEEEeecccCceeeeEEEeCC
Q 003005 340 SITPNRRPPGIATFFNPIDMALLSAAKAG-IFVVQAAGNTGPSPK----SMSSFSP--WIFTVGAASHDRIYTNSIILGN 412 (858)
Q Consensus 340 S~G~~~~~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~~p--~vitVgA~~~~~~~~~~~~~~~ 412 (858)
|+|.. .. ......+..++..+...| +++|+|+||.+.... .+|...+ .+++||+.+.
T Consensus 251 s~g~~-~~---~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------ 314 (508)
T COG1404 251 SLGGS-LS---DSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------ 314 (508)
T ss_pred cCCCC-cc---ccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------------
Confidence 99985 11 223467788888888887 999999999997652 2222222 5555554321
Q ss_pred ceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHH
Q 003005 413 SLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAK 492 (858)
Q Consensus 413 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~ 492 (858)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcccccccccceEEeeeeeEEEecccccccCCCCC
Q 003005 493 NLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSSLERDEVTKKIIKFGAVACILGGLKANFSNSAP 572 (858)
Q Consensus 493 ~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 572 (858)
.+
T Consensus 315 ------------------------------------------------------------------------------~~ 316 (508)
T COG1404 315 ------------------------------------------------------------------------------SD 316 (508)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 13
Q ss_pred ccccccccCCCCCCCCCCCcCcCCCcccCCCceEEeeccCCCCCCccccCcc--ceeecccCchhHHHHHHHHHHHHhCC
Q 003005 573 KIMYYSARGPDPEDSFLDDADIMKPNLVAPGNSIWAAWSSLGTDSVEFQGES--FAMMSGTSMAAPHIAGLAALIKQKFP 650 (858)
Q Consensus 573 ~~a~fSS~GPt~~~~~~~~~g~~KPDI~APG~~I~Sa~~~~~~~~~~~~~~~--y~~~sGTSMAaP~VAG~aALl~q~~P 650 (858)
.++.||++|+.. ..+++|||.+|.+.. .. ....+.. |..++||||++|||+|++||+++.+|
T Consensus 317 ~~~~~s~~g~~~-----------~~~~~apg~~i~~~~-~~----~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~ 380 (508)
T COG1404 317 TVASFSNDGSPT-----------GVDIAAPGVNILSLS-AV----NTLPGDGADYVTLSGTSMAAPHVSGVAALVLSANP 380 (508)
T ss_pred ccccccccCCCC-----------CcceeCCCccccccc-cc----eeeeCCccceEeeccccccccHHHHHHHHHHccCc
Confidence 467889999752 128999999998822 00 0003334 99999999999999999999999999
Q ss_pred -CCCHHHHHHHHHccccc
Q 003005 651 -SFSPSAIASALSTSATL 667 (858)
Q Consensus 651 -~lsp~~ik~~L~~TA~~ 667 (858)
.+++.+++..+..++..
T Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 381 NELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ccCCHHHHHHHHhhcccc
Confidence 89999999998888874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2e-22 Score=207.37 Aligned_cols=154 Identities=22% Similarity=0.357 Sum_probs=100.6
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++||+|++||+|.||||-||||+.+.. .. ..++|.+.
T Consensus 153 awa~----g~tgknvttaimddgvdymhpdlk~nyn-----ae-----------------------asydfssn------ 194 (629)
T KOG3526|consen 153 AWAL----GYTGKNVTTAIMDDGVDYMHPDLKSNYN-----AE-----------------------ASYDFSSN------ 194 (629)
T ss_pred HHhh----cccCCCceEEeecCCchhcCcchhcccC-----ce-----------------------eecccccC------
Confidence 6766 8999999999999999999999997533 11 11222221
Q ss_pred cCCCCCCCCCC--C--CCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHH
Q 003005 255 FNSSQDYASPF--D--GDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAA 330 (858)
Q Consensus 255 ~~~~~~~~~~~--d--~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~ 330 (858)
.+.+.|+ | -+.|||.|||-+++..+++.+ | .|||.+.++..+|+++. .+..|+++|-....
T Consensus 195 ----dpfpyprytddwfnshgtrcagev~aardngic--g------vgvaydskvagirmldq---pymtdlieansmgh 259 (629)
T KOG3526|consen 195 ----DPFPYPRYTDDWFNSHGTRCAGEVVAARDNGIC--G------VGVAYDSKVAGIRMLDQ---PYMTDLIEANSMGH 259 (629)
T ss_pred ----CCCCCCcccchhhhccCccccceeeeeccCCce--e------eeeeeccccceeeecCC---chhhhhhhhcccCC
Confidence 1122222 2 368999999987766555543 2 59999999999999876 55677776543322
Q ss_pred H-CCCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHh-----CCCEEEEecCCCCCC
Q 003005 331 Q-DGVDIISLSITPNRRPPGIATFFNPIDMALLSAAK-----AGIFVVQAAGNTGPS 381 (858)
Q Consensus 331 ~-~g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~ 381 (858)
+ ..++|.+.|||.......-+...+..-+|+-.-++ .|-++|.|.|..|.+
T Consensus 260 ep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 260 EPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred CCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 2 35789999999654321111122233334433333 468899999988864
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.71 E-value=5.5e-17 Score=180.57 Aligned_cols=103 Identities=24% Similarity=0.294 Sum_probs=82.2
Q ss_pred ceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHC---CCCEEEEccCCCCCCCCCCccCCHHHHHHHHHHhCCCEE
Q 003005 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQD---GVDIISLSITPNRRPPGIATFFNPIDMALLSAAKAGIFV 371 (858)
Q Consensus 295 ~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~---g~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~~~Gi~v 371 (858)
...||||+|+|+.|++.+.. ..+++.++.+++.+ +++|||+|||....... ..+.+.++.+++.|..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHhCCeEE
Confidence 45799999999999987652 34577888888887 99999999998643211 223467888999999999999
Q ss_pred EEecCCCCCCCC-----------CCCCCCCceEEEeecccCc
Q 003005 372 VQAAGNTGPSPK-----------SMSSFSPWIFTVGAASHDR 402 (858)
Q Consensus 372 V~AAGN~g~~~~-----------~~~~~~p~vitVgA~~~~~ 402 (858)
|+||||+|.... .+|+.+|+|++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 3578899999999987553
No 44
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=99.22 E-value=1.3e-10 Score=106.94 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=62.7
Q ss_pred EEEeecCcceEEEEEEEEcCC-CceEEEEeec--------CCc----------c-eEEEeecEEEEeCCCEEEEEEEEEE
Q 003005 759 ITIARLNQSRTVQRTLTNIAG-NETYSVGWSA--------PYG----------V-SMKVSPTHFSIASGEKQVLNVFFNA 818 (858)
Q Consensus 759 i~~~~~~~~~~~~~tv~n~~~-~~ty~~~~~~--------~~~----------~-~v~~~p~~~tl~~g~s~~~~v~~~~ 818 (858)
|+|.++....+++++|+|.++ ..+|++++.. ..| . .+++++.+|||+||++++|+|+|++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 345666566788899999999 9999988651 011 1 5777899999999999999999999
Q ss_pred ec----CCCCeEEEEEEEEeCCcc-EEEEeEE
Q 003005 819 TT----SGTAASFGRIGLFGNQGH-IVNIPLS 845 (858)
Q Consensus 819 ~~----~~~~~~~G~i~~~~~~~~-~l~iP~~ 845 (858)
++ ..+.+++|||.|+++++. .||||||
T Consensus 81 p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 81 PSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp -GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred hhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 88 457899999999998775 9999997
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.68 E-value=1.5e-07 Score=90.74 Aligned_cols=102 Identities=23% Similarity=0.321 Sum_probs=72.1
Q ss_pred CCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHH
Q 003005 458 NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYY 537 (858)
Q Consensus 458 ~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~ 537 (858)
.+...+++|||+||.+ |.|.+.+|+.+++.+||.|+|++|+..............+|.+.| +.+++..|++++
T Consensus 40 d~~~~dv~GkIvL~~r------g~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~I-s~~dG~~L~~~l 112 (143)
T cd02133 40 DFEGKDVKGKIALIQR------GEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFI-SKEDGEALKAAL 112 (143)
T ss_pred ccCCCCccceEEEEEC------CCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEe-cHHHHHHHHHHH
Confidence 3445678999999998 568899999999999999999999875321111112346888887 789999999998
Q ss_pred hcccccccccceEEeeeeeEEEecccccccCCCCCccccccccCCC
Q 003005 538 NSSLERDEVTKKIIKFGAVACILGGLKANFSNSAPKIMYYSARGPD 583 (858)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GPt 583 (858)
++ . ..+.+..+ .. ....+.++.||||||+
T Consensus 113 ~~-~-------~~i~~~~~--------~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 113 ES-S-------KKLTFNTK--------KE-KATNPDLADFSSRGPW 141 (143)
T ss_pred hC-C-------CeEEEEec--------cc-cccCCccccccCcCCC
Confidence 76 1 11222211 11 2234569999999997
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.52 E-value=4.4e-07 Score=78.40 Aligned_cols=46 Identities=33% Similarity=0.400 Sum_probs=40.8
Q ss_pred CCceeEEEEEcceeeEEEEEcCHHHHHHHhcCCCeeEEEeCccccc
Q 003005 115 GEKYLKLYSYHYLINGFSVFVTPQQAEKLSRRREVANVVSDFSVRT 160 (858)
Q Consensus 115 ~~~~~~~~~~~~~~ng~~v~~~~~~l~~L~~~p~V~~v~~~~~~~~ 160 (858)
..+.++++.|+..+|||+++++++++++|+++|+|++|+|+..+++
T Consensus 36 ~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 36 SINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred ccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 4468999999989999999999999999999999999999998865
No 47
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.44 E-value=3.4e-06 Score=79.44 Aligned_cols=117 Identities=24% Similarity=0.370 Sum_probs=86.2
Q ss_pred EEeCCceEEEeeecCCCCCceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccccCcc-hHHH
Q 003005 408 IILGNSLTISGVGLAPGTDKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLS-TIKQ 486 (858)
Q Consensus 408 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~-~~~~ 486 (858)
++++||+++.++++.+.....+++++..... .......|. ...+...+++|||++|.++ .+ .+..
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~-------~~~~~~~C~-~~~~~~~~v~GkIVlc~~~------~~~~~~~ 67 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANS-------GDVDASLCL-PGSLDPSKVKGKIVLCDRG------GNTSRVA 67 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcC-------CCCccccCC-CCCCChhhccccEEEEeCC------CCccHHH
Confidence 5788999999999986543366776633211 113457786 3445557899999999883 45 7788
Q ss_pred HHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhhHHHHHHHHhcc
Q 003005 487 AFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 487 ~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~~~~l~~~~~~~ 540 (858)
+..++++.||.|+|++++....... ......+|.+.| ..+++..|++|+++.
T Consensus 68 k~~~~~~~GA~gvI~~~~~~~~~~~-~~~~~~iP~v~I-~~~~g~~l~~y~~~~ 119 (126)
T cd02120 68 KGDAVKAAGGAGMILANDPTDGLDV-VADAHVLPAVHV-DYEDGTAILSYINST 119 (126)
T ss_pred HHHHHHHcCCcEEEEEecCCCCcee-cccccccceEEE-CHHHHHHHHHHHHcC
Confidence 9999999999999999977643222 222567999998 779999999999875
No 48
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.8e-06 Score=97.36 Aligned_cols=158 Identities=21% Similarity=0.252 Sum_probs=97.2
Q ss_pred cccccCCCCCCCCCcEEEEeccCcCCCCCCCCCCCCCCCCCCCCCcCccccccCCCCCCCCCceeeeeeecchhhhhcCc
Q 003005 175 AWIQEGGYETAGEGVVIGFIDTGIDPTHPSFADDASEHSYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGI 254 (858)
Q Consensus 175 ~w~~~~~~~~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~kv~g~~~~~~~~~~~~~ 254 (858)
+|.. +++|+++.|+|.|+|++..||++....- +...| ++...
T Consensus 25 ~~~~----~~~g~~~~~~i~ddgl~~~h~~~~~~~~-----~~~s~-----------------------d~~~~------ 66 (431)
T KOG3525|consen 25 AWCK----GYTGTRVSVTILDDGLECSHPDLRNNYD-----PLGSY-----------------------DVNRH------ 66 (431)
T ss_pred cccc----CCCCCceEEEEeeccccccCcccccccC-----cceeE-----------------------eeecC------
Confidence 6665 7999999999999999999999997532 22222 22111
Q ss_pred cCCCCCCCCCCCCCCCcccchhhhccCCCCCcccccccccceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHH-CC
Q 003005 255 FNSSQDYASPFDGDGHGSHTASVAAGNHGIPVVVTGHHFGNASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQ-DG 333 (858)
Q Consensus 255 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~-~g 333 (858)
-+...+..+......|||-|++-++...++... ..|+++++++..++++... .++...+...... .-
T Consensus 67 ~~~p~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~----v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 67 DNDPEPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC----VSDAVEAPSLGFGPCH 134 (431)
T ss_pred CCCcccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee----cccceecccccCCCCC
Confidence 011111222234588999999998887533221 3599999999999987541 1122222222222 35
Q ss_pred CCEEEEccCCCCCCCCCCccCCHHHHHHHHHH-----hCCCEEEEecCCCCCCC
Q 003005 334 VDIISLSITPNRRPPGIATFFNPIDMALLSAA-----KAGIFVVQAAGNTGPSP 382 (858)
Q Consensus 334 ~~VIN~S~G~~~~~~~~~~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g~~~ 382 (858)
+++-..|||......--..-......++..++ .+|-+.|+|.||.+...
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 78999999964322100111223333443333 47899999999998754
No 49
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.9e-06 Score=99.52 Aligned_cols=99 Identities=21% Similarity=0.307 Sum_probs=61.8
Q ss_pred ceeecCCcceeeeeehhcCCCCCCHHHHHHHHHHHHHCCC-CEEEEccCCCCCC-CCCCccCCHHHHHHHHHHhCCCEEE
Q 003005 295 NASGMAPRSHIAVYKALYKSFGGFAADVVAAIDQAAQDGV-DIISLSITPNRRP-PGIATFFNPIDMALLSAAKAGIFVV 372 (858)
Q Consensus 295 ~~~GvAP~A~l~~~kv~~~~~~~~~~~i~~ai~~a~~~g~-~VIN~S~G~~~~~-~~~~~~~~~~~~a~~~a~~~Gi~vV 372 (858)
...-+||+|+|..+-.-. .....+..++.+....=. -+|-.||+....- +....+.+.++.....|..+|+.++
T Consensus 287 ~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 346899999999876521 222233333333322211 2333566642111 1111245677777888899999999
Q ss_pred EecCCCCCCCCC--------CCCCCCceEEEee
Q 003005 373 QAAGNTGPSPKS--------MSSFSPWIFTVGA 397 (858)
Q Consensus 373 ~AAGN~g~~~~~--------~~~~~p~vitVgA 397 (858)
+|+|.+|....+ .|+.+|+|.+||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999876542 4688999999998
No 50
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.94 E-value=5.9e-05 Score=69.41 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=62.9
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcC---cccCCCCCCCCeEEecC
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG---FQLNPTPMKMPGIIIPS 526 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~~~~~~ip~~~i~~ 526 (858)
...|. ...+...+++|+|+|+.| |.|+|.+|..+|+++||.++|+||+..... .........||.++| +
T Consensus 30 ~~gC~-~~~~~~~~l~gkIaLV~R------G~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~I-s 101 (120)
T cd02129 30 SVLCS-ASDVPPGGLKGKAVVVMR------GNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALL-S 101 (120)
T ss_pred cCCCC-ccccCccccCCeEEEEEC------CCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEE-e
Confidence 45676 445556678999999999 789999999999999999999999875311 111124567899887 7
Q ss_pred hhhHHHHHHHHhc
Q 003005 527 PDDSKILLQYYNS 539 (858)
Q Consensus 527 ~~~~~~l~~~~~~ 539 (858)
..+|..|++.+..
T Consensus 102 ~~dG~~i~~~l~~ 114 (120)
T cd02129 102 YKDMLDIQQTFGD 114 (120)
T ss_pred HHHHHHHHHHhcc
Confidence 8889999877654
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=97.92 E-value=4.2e-05 Score=68.84 Aligned_cols=75 Identities=25% Similarity=0.494 Sum_probs=58.2
Q ss_pred CCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC---cCcccCCCCCCCCeEEecChhhHHH
Q 003005 456 SSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV---IGFQLNPTPMKMPGIIIPSPDDSKI 532 (858)
Q Consensus 456 ~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~---~~~~~~~~~~~ip~~~i~~~~~~~~ 532 (858)
...+...+++|||+||.| |.|++.+|+.+++++||.|+|++|.... ...........||.++| +..++..
T Consensus 24 ~~~~~~~~~~gkIvlv~r------g~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I-~~~~g~~ 96 (101)
T PF02225_consen 24 PSDYNGSDVKGKIVLVER------GSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFI-SYEDGEA 96 (101)
T ss_dssp HHHTSTSTCTTSEEEEES------TSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE--HHHHHH
T ss_pred ccccCCccccceEEEEec------CCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEe-CHHHHhh
Confidence 345567789999999988 7899999999999999999999992221 22233556788999999 8899999
Q ss_pred HHHHH
Q 003005 533 LLQYY 537 (858)
Q Consensus 533 l~~~~ 537 (858)
|++|+
T Consensus 97 L~~~i 101 (101)
T PF02225_consen 97 LLAYI 101 (101)
T ss_dssp HHHHH
T ss_pred hhccC
Confidence 98864
No 52
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.79 E-value=0.00032 Score=65.60 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=62.9
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCc--c-cCC-CCCCCCeEEec
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF--Q-LNP-TPMKMPGIIIP 525 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~-~~~-~~~~ip~~~i~ 525 (858)
.+.|.. ..+...+++|||+||.| |.|.+.+|..+++++||.++|++|+...... . ... ....+|.++|
T Consensus 29 ~~gC~~-~~~~~~~~~GkIvLv~r------g~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~I- 100 (122)
T cd04816 29 PAGCDA-SDYDGLDVKGAIVLVDR------GGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVI- 100 (122)
T ss_pred ccCCCc-cccCCCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEE-
Confidence 467864 34445678999999998 6788999999999999999999997763211 1 111 3456888887
Q ss_pred ChhhHHHHHHHHhcc
Q 003005 526 SPDDSKILLQYYNSS 540 (858)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (858)
+..+++.|++++...
T Consensus 101 s~~~G~~l~~~l~~g 115 (122)
T cd04816 101 TKAAGAALRRRLGAG 115 (122)
T ss_pred cHHHHHHHHHHHcCC
Confidence 779999999988654
No 53
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.77 E-value=0.00014 Score=67.36 Aligned_cols=82 Identities=10% Similarity=0.149 Sum_probs=62.1
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcC---cccC----CCCCCCCeE
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIG---FQLN----PTPMKMPGI 522 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~---~~~~----~~~~~ip~~ 522 (858)
.+.|..+.. ..+++|+|+|+.| |.|+|.+|..+|+++||.++|+||+..... ..+. .....||.+
T Consensus 21 ~~gC~~~~~--~~~~~g~I~Lv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v 92 (118)
T cd02127 21 LEACEELRN--IHDINGNIALIER------GGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAA 92 (118)
T ss_pred cccCCCCCC--ccccCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEE
Confidence 467875332 4578999999999 789999999999999999999999765421 1111 234578888
Q ss_pred EecChhhHHHHHHHHhcc
Q 003005 523 IIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 523 ~i~~~~~~~~l~~~~~~~ 540 (858)
+| +..++..|++.+...
T Consensus 93 ~I-s~~dG~~L~~~l~~g 109 (118)
T cd02127 93 FL-LGKNGYMIRKTLERL 109 (118)
T ss_pred Ee-cHHHHHHHHHHHHcC
Confidence 87 778889998887654
No 54
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.72 E-value=0.00013 Score=69.10 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=58.0
Q ss_pred CccccccceEEEEEeccccccCcch-----HHHHHHHHHhCCCeEEEEEECCCCcCcc---cC-CC-CCCCCeEEecChh
Q 003005 459 FNQDLVQGNLLICSYSIRFVLGLST-----IKQAFETAKNLSAAGIVFYMDPFVIGFQ---LN-PT-PMKMPGIIIPSPD 528 (858)
Q Consensus 459 ~~~~~~~Gkivl~~~~~~~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~~~~~---~~-~~-~~~ip~~~i~~~~ 528 (858)
+...+++|||+|+.| |.|. |.+|+.+|+++||.|+|+||+....+.. +. .. ...||.++| +..
T Consensus 50 ~~~~d~~GkIaLI~R------G~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~i-s~~ 122 (139)
T cd04817 50 YICGGMAGKICLIER------GGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSV-DRA 122 (139)
T ss_pred ccCCCcCccEEEEEC------CCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEe-eHH
Confidence 445578999999999 6677 9999999999999999999998433321 11 22 468999998 788
Q ss_pred hHHHHHHHHhc
Q 003005 529 DSKILLQYYNS 539 (858)
Q Consensus 529 ~~~~l~~~~~~ 539 (858)
++..|++.+..
T Consensus 123 dG~~L~~~l~~ 133 (139)
T cd04817 123 DGQALLAALGQ 133 (139)
T ss_pred HHHHHHHHhcC
Confidence 99999887754
No 55
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.71 E-value=0.00027 Score=67.23 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=64.0
Q ss_pred CccccCCCCCC-ccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC-cCcc-c-CCCCCCCCeEEe
Q 003005 449 YVGECQDSSNF-NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV-IGFQ-L-NPTPMKMPGIII 524 (858)
Q Consensus 449 ~~~~c~~~~~~-~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~-~-~~~~~~ip~~~i 524 (858)
..+.|...... ...+..|+|+|+.| |.|+|.+|+.+|+.+||.++|+||+... .... + ......+|.++|
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~R------G~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~I 116 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQR------GNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMI 116 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEE
Confidence 35678765542 34678999999998 7899999999999999999999998862 1111 1 222346887776
Q ss_pred cChhhHHHHHHHHhcc
Q 003005 525 PSPDDSKILLQYYNSS 540 (858)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (858)
+..+|..|++++...
T Consensus 117 -s~~~G~~l~~~l~~G 131 (138)
T cd02122 117 -TNPKGMEILELLERG 131 (138)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999988654
No 56
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=97.70 E-value=0.00018 Score=66.45 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=62.8
Q ss_pred CccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcc--c---CCCCCCCCeEE
Q 003005 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQ--L---NPTPMKMPGII 523 (858)
Q Consensus 449 ~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~--~---~~~~~~ip~~~ 523 (858)
..+.|... +..+++|+|+|+.| |.|+|.+|+.+++++||+++|+||+....+.. . ......+|.++
T Consensus 26 p~~gC~~~---~~~~l~gkIvLV~R------G~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~ 96 (117)
T cd04813 26 PTDACSLQ---EHAEIDGKVALVLR------GGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMF 96 (117)
T ss_pred CCCCCCCC---CcCCcCCeEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEE
Confidence 35678644 55788999999998 78999999999999999999999977642211 1 12345788888
Q ss_pred ecChhhHHHHHHHHhcc
Q 003005 524 IPSPDDSKILLQYYNSS 540 (858)
Q Consensus 524 i~~~~~~~~l~~~~~~~ 540 (858)
+ +..++..|..+++.+
T Consensus 97 I-s~~~g~~L~~l~~~~ 112 (117)
T cd04813 97 T-SRTSYHLLSSLLPKS 112 (117)
T ss_pred E-cHHHHHHHHHhcccc
Confidence 8 688999998876543
No 57
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=97.63 E-value=0.00025 Score=66.60 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=62.2
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc-----Cc-c--cCC---CCCC
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-----GF-Q--LNP---TPMK 518 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~~-~--~~~---~~~~ 518 (858)
...|.... ...+++|||+|+.| |.|+|.+|+.+|+++||.++|++|+.... .. . ... ....
T Consensus 27 ~~gC~~~~--~~~~~~gkIaLv~R------G~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~ 98 (126)
T cd02126 27 YRACSEIT--NAEEVKGKIAIMER------GDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVT 98 (126)
T ss_pred hhcccCCC--CccccCceEEEEEC------CCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCe
Confidence 46787433 25568999999999 78999999999999999999999876532 11 1 111 2457
Q ss_pred CCeEEecChhhHHHHHHHHhccc
Q 003005 519 MPGIIIPSPDDSKILLQYYNSSL 541 (858)
Q Consensus 519 ip~~~i~~~~~~~~l~~~~~~~~ 541 (858)
||.++| +..+|..|++.+....
T Consensus 99 IP~v~I-~~~dG~~L~~~l~~~~ 120 (126)
T cd02126 99 IPVVFL-FSKEGSKLLAAIKEHQ 120 (126)
T ss_pred EEEEEE-EHHHHHHHHHHHHhCC
Confidence 888887 7788999998886643
No 58
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.61 E-value=0.00034 Score=65.78 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=60.1
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccCCCCCCCCeEEecChhh
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLNPTPMKMPGIIIPSPDD 529 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ip~~~i~~~~~ 529 (858)
.+.|....... .+++|+|+|+.| |.|.+.+|+.+++++||+++|+||+....-.........++.+.+ ..+
T Consensus 41 ~~gC~~~~~~~-~~~~g~IaLv~r------g~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~--~~~ 111 (129)
T cd02124 41 DDACQPLPDDT-PDLSGYIVLVRR------GTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT--PED 111 (129)
T ss_pred cccCcCCCccc-ccccCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe--HHH
Confidence 46787543322 368999999998 679999999999999999999999775321111223344566655 899
Q ss_pred HHHHHHHHhcc
Q 003005 530 SKILLQYYNSS 540 (858)
Q Consensus 530 ~~~l~~~~~~~ 540 (858)
|..|++.+...
T Consensus 112 G~~l~~~l~~G 122 (129)
T cd02124 112 GEAWIDALAAG 122 (129)
T ss_pred HHHHHHHHhcC
Confidence 99999887654
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=97.58 E-value=0.00041 Score=65.05 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=62.8
Q ss_pred ccccCCCCCCc-cc----cccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCccc----------CC
Q 003005 450 VGECQDSSNFN-QD----LVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL----------NP 514 (858)
Q Consensus 450 ~~~c~~~~~~~-~~----~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----------~~ 514 (858)
.+.|....... +. ...++|+|+.| |.|+|.+|+.+|+++||+++|+||+....-... ..
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~R------G~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~ 95 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDR------GGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYI 95 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEEC------CCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccC
Confidence 56788665533 22 36789999999 789999999999999999999999865321111 11
Q ss_pred CCCCCCeEEecChhhHHHHHHHHhccc
Q 003005 515 TPMKMPGIIIPSPDDSKILLQYYNSSL 541 (858)
Q Consensus 515 ~~~~ip~~~i~~~~~~~~l~~~~~~~~ 541 (858)
....||.++| +..++..|++.+....
T Consensus 96 ~~i~IP~v~I-s~~~G~~L~~~l~~g~ 121 (127)
T cd02125 96 EKITIPSALI-TKAFGEKLKKAISNGE 121 (127)
T ss_pred CCceEeEEEE-CHHHHHHHHHHHhcCC
Confidence 2346888887 6789999998876543
No 60
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=97.54 E-value=0.00047 Score=64.06 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=61.9
Q ss_pred CccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc-Cccc--CCCCCCCCeEEec
Q 003005 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQL--NPTPMKMPGIIIP 525 (858)
Q Consensus 449 ~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~--~~~~~~ip~~~i~ 525 (858)
....|..... ..+++|||+||.+ +.|++..|..++.++||.|+|++|+.... .+.. ......+|.+.|
T Consensus 26 ~~~~C~~~~~--~~~v~GkIvL~~r------g~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V- 96 (118)
T cd04818 26 NTDGCTAFTN--AAAFAGKIALIDR------GTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMI- 96 (118)
T ss_pred cccccCCCCc--CCCCCCEEEEEEC------CCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEe-
Confidence 3567865443 2359999999987 56889999999999999999999987641 1111 112356888887
Q ss_pred ChhhHHHHHHHHhcc
Q 003005 526 SPDDSKILLQYYNSS 540 (858)
Q Consensus 526 ~~~~~~~l~~~~~~~ 540 (858)
+..++..|++|+...
T Consensus 97 ~~~~g~~l~~~l~~g 111 (118)
T cd04818 97 SQADGDALKAALAAG 111 (118)
T ss_pred cHHHHHHHHHHHhcC
Confidence 788999999998754
No 61
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.50 E-value=0.00052 Score=65.62 Aligned_cols=80 Identities=13% Similarity=0.237 Sum_probs=60.6
Q ss_pred ccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCc-CcccC----CCCCCCCeEEe
Q 003005 450 VGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVI-GFQLN----PTPMKMPGIII 524 (858)
Q Consensus 450 ~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~~~~~----~~~~~ip~~~i 524 (858)
.+.|.... .+++|+|+|+.| |.|+|.+|+.+++++||.++|+||+.... .+... .....||.++|
T Consensus 48 ~~gC~~~~----~~~~g~IvLV~R------G~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~I 117 (139)
T cd02132 48 LDCCSPST----SKLSGSIALVER------GECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMI 117 (139)
T ss_pred ccccCCCC----cccCCeEEEEEC------CCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEe
Confidence 46787543 368999999998 78999999999999999999999976531 11111 11457886665
Q ss_pred cChhhHHHHHHHHhcc
Q 003005 525 PSPDDSKILLQYYNSS 540 (858)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (858)
+..+|..|++.+...
T Consensus 118 -s~~~G~~L~~~l~~g 132 (139)
T cd02132 118 -PQSAGDALNKSLDQG 132 (139)
T ss_pred -cHHHHHHHHHHHHcC
Confidence 779999999888654
No 62
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=97.48 E-value=0.00057 Score=64.04 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=63.7
Q ss_pred CccccCCCC-CCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCccc-C----CCCCCCCeE
Q 003005 449 YVGECQDSS-NFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL-N----PTPMKMPGI 522 (858)
Q Consensus 449 ~~~~c~~~~-~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~-~----~~~~~ip~~ 522 (858)
....|.... .+...+++|||+||.+ +.|.+..|+.+++++||+|+|++++........ . .....+|.+
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~------g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRR------GGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEEC------CCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEE
Confidence 356675322 1456778999999987 568899999999999999999999876321111 1 244678988
Q ss_pred EecChhhHHHHHHHHhcc
Q 003005 523 IIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 523 ~i~~~~~~~~l~~~~~~~ 540 (858)
.| +..++..|++++.+.
T Consensus 103 ~i-s~~~g~~l~~~~~~~ 119 (126)
T cd00538 103 GI-SYADGEALLSLLEAG 119 (126)
T ss_pred Ee-CHHHHHHHHHHHhcC
Confidence 88 789999999998753
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=97.43 E-value=0.00063 Score=66.14 Aligned_cols=84 Identities=13% Similarity=0.248 Sum_probs=63.3
Q ss_pred ccccCCCCCC--ccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCcccC--C---CCCCCCeE
Q 003005 450 VGECQDSSNF--NQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQLN--P---TPMKMPGI 522 (858)
Q Consensus 450 ~~~c~~~~~~--~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~--~---~~~~ip~~ 522 (858)
.+.|...... ......|+|+|+.| |.|+|.+|+.+|+++||.++|++|+.......+. . ....||.+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~R------G~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v 123 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRR------GNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSV 123 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEEC------CCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEE
Confidence 4578754432 23678999999999 7899999999999999999999998654222211 1 24578998
Q ss_pred EecChhhHHHHHHHHhcc
Q 003005 523 IIPSPDDSKILLQYYNSS 540 (858)
Q Consensus 523 ~i~~~~~~~~l~~~~~~~ 540 (858)
+| +..++..|+.++...
T Consensus 124 ~I-s~~dg~~L~~~l~~~ 140 (153)
T cd02123 124 FV-GKSTGEILKKYASYE 140 (153)
T ss_pred Ee-eHHHHHHHHHHHhcC
Confidence 88 778899998887654
No 64
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=97.38 E-value=0.00094 Score=62.42 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=59.7
Q ss_pred cccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCc---ccCCCCCCCCeEEecCh
Q 003005 451 GECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGF---QLNPTPMKMPGIIIPSP 527 (858)
Q Consensus 451 ~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~~~~~~ip~~~i~~~ 527 (858)
..|... .+ +.+++|||+|+.| |.|.+.+|+.+++++||.++|+||+...... ........+|.+.| +.
T Consensus 32 ~gC~~~-~~-~~~~~gkIvlv~r------g~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I-s~ 102 (122)
T cd02130 32 LGCDAA-DY-PASVAGNIALIER------GECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI-SQ 102 (122)
T ss_pred CCCCcc-cC-CcCCCCEEEEEEC------CCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe-cH
Confidence 456532 22 2468999999998 6788999999999999999999997732111 11223456888876 77
Q ss_pred hhHHHHHHHHhcc
Q 003005 528 DDSKILLQYYNSS 540 (858)
Q Consensus 528 ~~~~~l~~~~~~~ 540 (858)
+++..|++.+.+.
T Consensus 103 ~~G~~L~~~l~~g 115 (122)
T cd02130 103 EDGKALVAALANG 115 (122)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999887654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.12 E-value=0.0068 Score=57.03 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=56.2
Q ss_pred CccccccceEEEEEeccccccCcc--hHHHHHHHHHhCCCeEEEEEECCCCcCc--c---c-CCCCCCCCeEEecChhhH
Q 003005 459 FNQDLVQGNLLICSYSIRFVLGLS--TIKQAFETAKNLSAAGIVFYMDPFVIGF--Q---L-NPTPMKMPGIIIPSPDDS 530 (858)
Q Consensus 459 ~~~~~~~Gkivl~~~~~~~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~---~-~~~~~~ip~~~i~~~~~~ 530 (858)
+...+++|||+++.+ +.+ ++..++.++.++||+|+|++|+....-. . . ......+|.+.| +.+++
T Consensus 38 ~~~~~v~GkIvlv~~------g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~I-s~edg 110 (127)
T cd04819 38 FDGLDLEGKIAVVKR------DDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASV-SGEDG 110 (127)
T ss_pred cCCCCCCCeEEEEEc------CCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEE-eHHHH
Confidence 334568999999998 455 7889999999999999999986543211 1 1 123457999987 78899
Q ss_pred HHHHHHHhcc
Q 003005 531 KILLQYYNSS 540 (858)
Q Consensus 531 ~~l~~~~~~~ 540 (858)
..|.+.++..
T Consensus 111 ~~L~~~l~~g 120 (127)
T cd04819 111 LRLARVAERN 120 (127)
T ss_pred HHHHHHHhcC
Confidence 9999888653
No 66
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.27 E-value=0.13 Score=46.20 Aligned_cols=87 Identities=22% Similarity=0.244 Sum_probs=62.1
Q ss_pred EEEeecC--cceEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeC
Q 003005 759 ITIARLN--QSRTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGN 835 (858)
Q Consensus 759 i~~~~~~--~~~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~ 835 (858)
|.++++. ...+.+.+|+|.+. ...|.+.........++++|..-.|+||++.++.|++.++...+. +++.|.+.-.
T Consensus 11 ldFG~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~-~~~~l~i~~e 89 (102)
T PF14874_consen 11 LDFGNVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGD-YEGSLVITTE 89 (102)
T ss_pred EEeeEEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCce-EEEEEEEEEC
Confidence 4444443 33455678899999 889988754323446778888888999999999999996554444 5799999754
Q ss_pred CccEEEEeEEEE
Q 003005 836 QGHIVNIPLSVV 847 (858)
Q Consensus 836 ~~~~l~iP~~~~ 847 (858)
+..+.||.-..
T Consensus 90 -~~~~~i~v~a~ 100 (102)
T PF14874_consen 90 -GGSFEIPVKAE 100 (102)
T ss_pred -CeEEEEEEEEE
Confidence 45778886543
No 67
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.98 E-value=0.088 Score=44.82 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=35.2
Q ss_pred ceEEEEEEEEcCC--CceEEEEeecCCcceEEEeecEE-EEeCCCEEEEEEEEEEecCC
Q 003005 767 SRTVQRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHF-SIASGEKQVLNVFFNATTSG 822 (858)
Q Consensus 767 ~~~~~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~-tl~~g~s~~~~v~~~~~~~~ 822 (858)
..+++.+|+|.+. .....+++..|.|-++..++.++ .|+||+++++++++++|...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 3467789999886 34567777778887766777665 69999999999999999863
No 68
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=94.76 E-value=0.11 Score=49.28 Aligned_cols=81 Identities=15% Similarity=0.083 Sum_probs=54.4
Q ss_pred CccccccceEEEEEeccccccCcchHHHH-------HHHHHhCCCeEEEEEECCCC------cCcccC-CCCCCCCeEEe
Q 003005 459 FNQDLVQGNLLICSYSIRFVLGLSTIKQA-------FETAKNLSAAGIVFYMDPFV------IGFQLN-PTPMKMPGIII 524 (858)
Q Consensus 459 ~~~~~~~Gkivl~~~~~~~~~g~~~~~~~-------~~~~~~~Ga~g~i~~n~~~~------~~~~~~-~~~~~ip~~~i 524 (858)
+...+++|||+++.++.+.......+..+ ...+.++||.|+|++|.... .+.... .....+|.+.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 34567999999999854311111155555 68999999999999985422 222222 33456999997
Q ss_pred cChhhHHHHHHHHhcc
Q 003005 525 PSPDDSKILLQYYNSS 540 (858)
Q Consensus 525 ~~~~~~~~l~~~~~~~ 540 (858)
+.+++..|...+...
T Consensus 113 -s~ed~~~L~r~l~~g 127 (134)
T cd04815 113 -SVEDADMLERLAARG 127 (134)
T ss_pred -chhcHHHHHHHHhCC
Confidence 778888888877654
No 69
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=94.49 E-value=0.6 Score=43.37 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=47.2
Q ss_pred cceEEEEEEEEcCC-CceEEEEeec----CCc--------------c------eEEEeecEEEEeCCCEEEEEEEEEEec
Q 003005 766 QSRTVQRTLTNIAG-NETYSVGWSA----PYG--------------V------SMKVSPTHFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 766 ~~~~~~~tv~n~~~-~~ty~~~~~~----~~~--------------~------~v~~~p~~~tl~~g~s~~~~v~~~~~~ 820 (858)
.+.++.++|+|.++ +.+|.+.+.. ..| + -+++ |..|+|+||++++|++++++|+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~~~sk~V~~~i~~P~ 105 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPPNESKTVTFTIKMPK 105 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECCCCEEEEEEEEEcCC
Confidence 45678889999998 8888876421 111 0 1233 4569999999999999999998
Q ss_pred C-CCCeEEEEEEEE
Q 003005 821 S-GTAASFGRIGLF 833 (858)
Q Consensus 821 ~-~~~~~~G~i~~~ 833 (858)
. -...+-|=|+|+
T Consensus 106 ~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 106 KAFDGIILGGIYFS 119 (121)
T ss_pred CCcCCEEEeeEEEE
Confidence 6 244444667775
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=94.09 E-value=0.18 Score=48.02 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=47.1
Q ss_pred CceeEEEEcccccCCCCcccCCCCccccCCCCCCccccccceEEEEEeccccc------cCc------chHHHHHHHHHh
Q 003005 426 DKMYTLISALHALNNNTTTTDDMYVGECQDSSNFNQDLVQGNLLICSYSIRFV------LGL------STIKQAFETAKN 493 (858)
Q Consensus 426 ~~~~~l~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~------~g~------~~~~~~~~~~~~ 493 (858)
....++++.+... ....|. ...+...+++|||||+.++.+.. .+. .++..|...+.+
T Consensus 19 ~~~aelVfvGyGi----------~a~~~~-~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~ 87 (142)
T cd04814 19 IKDAPLVFVGYGI----------KAPELS-WDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAAR 87 (142)
T ss_pred ccceeeEEecCCc----------CCCCCC-hhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHH
Confidence 3456777665432 122343 34566678999999998853311 011 157789999999
Q ss_pred CCCeEEEEEECCC
Q 003005 494 LSAAGIVFYMDPF 506 (858)
Q Consensus 494 ~Ga~g~i~~n~~~ 506 (858)
+||.|+|++++..
T Consensus 88 ~GA~gvIii~~~~ 100 (142)
T cd04814 88 HGAAGVLIVHELA 100 (142)
T ss_pred CCCcEEEEEeCCC
Confidence 9999999999765
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.95 E-value=0.32 Score=46.93 Aligned_cols=51 Identities=12% Similarity=0.136 Sum_probs=38.6
Q ss_pred CCCccccccceEEEEEeccc-------cc-----cCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 457 SNFNQDLVQGNLLICSYSIR-------FV-----LGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 457 ~~~~~~~~~Gkivl~~~~~~-------~~-----~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
..+...+++|||+|+.++.. .. ...|++..|+.+|...||+|+|+|++...
T Consensus 39 ~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~ 101 (151)
T cd04822 39 DDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS 101 (151)
T ss_pred hhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 34556789999999987521 00 12267889999999999999999998754
No 72
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.83 E-value=0.28 Score=45.36 Aligned_cols=55 Identities=20% Similarity=0.326 Sum_probs=39.6
Q ss_pred eEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCC
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSG 822 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~ 822 (858)
..++.+|.|.+. +.+|++++....++++......++|+||++.++.|.+.+|...
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECCCCEEEEEEEEEECHHH
Confidence 357789999999 9999999988778888665689999999999999999999863
No 73
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=93.46 E-value=0.42 Score=45.32 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCCccccccceEEEEEeccccccC------cchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 457 SNFNQDLVQGNLLICSYSIRFVLG------LSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 457 ~~~~~~~~~Gkivl~~~~~~~~~g------~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
.++...+++|||+|+.++.+...+ ...+..|..+|..+||.|+|++++..
T Consensus 41 ~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 41 DDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred hhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 345567899999999985431111 02477899999999999999999765
No 74
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=93.35 E-value=0.11 Score=51.50 Aligned_cols=39 Identities=26% Similarity=0.484 Sum_probs=34.9
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
.+++|||+|+.+ |.|.+.+|+.+|+.+||+|+|+|++..
T Consensus 52 v~v~GkIvLvr~------G~~~~~~Kv~~A~~~GA~gvIiy~Dp~ 90 (183)
T cd02128 52 VSVNGSVVLVRA------GKISFAEKVANAEKLGAVGVLIYPDPA 90 (183)
T ss_pred CCCCCeEEEEEC------CCCCHHHHHHHHHHCCCEEEEEecCHH
Confidence 468999999999 577889999999999999999998753
No 75
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=91.78 E-value=1.3 Score=41.85 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=48.6
Q ss_pred EEEEEEcCC--CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEe
Q 003005 771 QRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFG 834 (858)
Q Consensus 771 ~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~ 834 (858)
...|.|..+ -+..+++.......++--.|..++|.|++.+++..++++.+....+++|+|++..
T Consensus 74 DvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P~~~~~i~~~iKVsStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 74 DVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAPHGFARIKATIKVSSTETGVIFGNIVYDG 139 (140)
T ss_pred EEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCCCcEEEEEEEEEEEeccCCEEEEEEEEec
Confidence 345566554 2333444444555666667899999999999999999999999999999999863
No 76
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=91.56 E-value=0.48 Score=52.87 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=52.7
Q ss_pred cccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC-----cCcccCCCCCCCCeEEecChhhHHHHHH
Q 003005 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV-----IGFQLNPTPMKMPGIIIPSPDDSKILLQ 535 (858)
Q Consensus 461 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-----~~~~~~~~~~~ip~~~i~~~~~~~~l~~ 535 (858)
....+|+++++.| |.|.|..|...|+++||.++++.|+..+ .+.........||.+.+ +.++++.+..
T Consensus 91 ~~kl~~~~~~v~R------GnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi-~~~~~~~l~~ 163 (541)
T KOG2442|consen 91 QSKLSGKVALVFR------GNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMI-SYSDGRDLNK 163 (541)
T ss_pred CccccceeEEEec------ccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEE-EhhhHHHHHh
Confidence 4567899999999 8999999999999999999999998543 22222334567888887 6677776664
No 77
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.85 E-value=2 Score=48.05 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=51.7
Q ss_pred ceEEEEEEEEcCC--CceEEEEeecCCcceEEEeecEE-EEeCCCEEEEEEEEEEecCC-CCeEEEEEEEEeC
Q 003005 767 SRTVQRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHF-SIASGEKQVLNVFFNATTSG-TAASFGRIGLFGN 835 (858)
Q Consensus 767 ~~~~~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~-tl~~g~s~~~~v~~~~~~~~-~~~~~G~i~~~~~ 835 (858)
..++...+.|.|+ =...++++..|+|-.+.+++.++ .|+||++.+|++++++|... ..-|.=.|.-++|
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 4566778899997 34566788889999999998876 56899999999999999874 2233344555544
No 78
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=89.34 E-value=0.54 Score=44.93 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=33.5
Q ss_pred ccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCC
Q 003005 462 DLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 462 ~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
-+++|||+++.. |......|+.+|+..||.|+|+|.+..
T Consensus 37 V~v~GkIvi~Ry------G~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKL------GQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEec------cCcchHHHHHHHHHCCCeEEEEecChh
Confidence 468999999998 455567899999999999999998764
No 79
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=87.91 E-value=0.84 Score=46.99 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=34.6
Q ss_pred cccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 461 QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 461 ~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
..+++|||+|+.+ |.+....|+.+|+.+||+|+|+|++...
T Consensus 67 gvdv~GKIvLvr~------G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARY------GGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEEC------CCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 4578999999988 4555678999999999999999997653
No 80
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=83.06 E-value=4 Score=46.64 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=46.6
Q ss_pred eEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecC
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~ 821 (858)
..++.++.|.+. +.+|+++++...++++...+..|+|+||++.++.|.+.++..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKAGEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECCCCEEEEEEEEEechh
Confidence 356778999998 999999998888888887645899999999999999998864
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=81.97 E-value=16 Score=41.20 Aligned_cols=55 Identities=15% Similarity=0.285 Sum_probs=45.2
Q ss_pred ceEEEEEEEEcCC-CceEEEEee-cCCcceEEEe-----ecEEEEeCCCEEEEEEEEEEecC
Q 003005 767 SRTVQRTLTNIAG-NETYSVGWS-APYGVSMKVS-----PTHFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 767 ~~~~~~tv~n~~~-~~ty~~~~~-~~~~~~v~~~-----p~~~tl~~g~s~~~~v~~~~~~~ 821 (858)
+..+++++.|.+. +.+|.++.. .|.+-+..|. -+++.|.||++++|+|.+.++..
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n 346 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN 346 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC
Confidence 4567888999999 999999987 6766555543 23799999999999999999886
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=79.63 E-value=17 Score=33.60 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=42.9
Q ss_pred eEEEEEEEEcCC-CceEEEEeec---CC----cceEEEeecEEEEeCCCEEEEEEEEEEec-CCCCeEEEEEEEEe
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSA---PY----GVSMKVSPTHFSIASGEKQVLNVFFNATT-SGTAASFGRIGLFG 834 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~---~~----~~~v~~~p~~~tl~~g~s~~~~v~~~~~~-~~~~~~~G~i~~~~ 834 (858)
...+++|+|.++ +..+.+.+.. .. .-.+.++|..|.|+||++++|.| +..+. ..+....=+|.|+.
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~~ 90 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRGSKLPIDRESLYRLSFRE 90 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EECSGS-SSS-EEEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-EecCCCCCCceEEEEEEEEE
Confidence 345678999886 5555555443 11 12578999999999999999999 66433 23333334677763
No 83
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=79.27 E-value=23 Score=30.78 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=38.7
Q ss_pred ceEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeC
Q 003005 767 SRTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGN 835 (858)
Q Consensus 767 ~~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~ 835 (858)
...+.++++|.+. ..++++....-. .-.|.+++|+||++.++.+.+. ..+.||+ |.+++.
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~ag~~~~~~w~l~---~s~gwYD--l~v~~~ 79 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAAGQTVSLTWPLA---ASGGWYD--LTVTGP 79 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECCCCEEEEEEeec---CCCCcEE--EEEEcC
Confidence 3467889999987 667666541111 1236789999999998888762 2345664 444443
No 84
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.65 E-value=5.2 Score=43.77 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=54.4
Q ss_pred cccCCCCCCc--cccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCCcCccc---CCCCCCCCeEEec
Q 003005 451 GECQDSSNFN--QDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFVIGFQL---NPTPMKMPGIIIP 525 (858)
Q Consensus 451 ~~c~~~~~~~--~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~---~~~~~~ip~~~i~ 525 (858)
++|.+...+. .......++++.| |.|+|..|+.+|+++|.+++|+||+........ .+....++.+++
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~R------g~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~v- 135 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRR------GGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFV- 135 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEc------cCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEE-
Confidence 5676544332 2344567888988 679999999999999999999999876543322 333455666655
Q ss_pred ChhhHHHHHHHH
Q 003005 526 SPDDSKILLQYY 537 (858)
Q Consensus 526 ~~~~~~~l~~~~ 537 (858)
+.-.|+.|.+|.
T Consensus 136 s~~~ge~l~~~~ 147 (348)
T KOG4628|consen 136 SVFSGELLSSYA 147 (348)
T ss_pred eeehHHHHHHhh
Confidence 445666666654
No 85
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=75.48 E-value=12 Score=31.89 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=35.5
Q ss_pred eEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEE
Q 003005 794 SMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVN 841 (858)
Q Consensus 794 ~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~ 841 (858)
.|+++|..++|..|++..|+++++...... ...+.|++++....+
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~---~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKV---TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCc---cceEEEEECCCcEEE
Confidence 578899999999999999999976444332 577889887766666
No 86
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=72.12 E-value=24 Score=30.83 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=33.5
Q ss_pred cceEEEEEEEEcCC--CceEEEEeecCCcceEEEeecEE-EEeCCCEEEEEEEEEEe
Q 003005 766 QSRTVQRTLTNIAG--NETYSVGWSAPYGVSMKVSPTHF-SIASGEKQVLNVFFNAT 819 (858)
Q Consensus 766 ~~~~~~~tv~n~~~--~~ty~~~~~~~~~~~v~~~p~~~-tl~~g~s~~~~v~~~~~ 819 (858)
...+++.+|+|.|. ...+.+.+... +..+ ....+ .|+||++.++++++.++
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCCCcEEEEEEEEEeC
Confidence 34567889999997 45666666543 3233 33345 78999999999999987
No 87
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=70.59 E-value=6.4 Score=38.35 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=34.7
Q ss_pred CCccccccceEEEEEeccccc-c------Cc------chHHHHHHHHHhCCCeEEEEEECCC
Q 003005 458 NFNQDLVQGNLLICSYSIRFV-L------GL------STIKQAFETAKNLSAAGIVFYMDPF 506 (858)
Q Consensus 458 ~~~~~~~~Gkivl~~~~~~~~-~------g~------~~~~~~~~~~~~~Ga~g~i~~n~~~ 506 (858)
++...+++|||||+..+.... . +. .....|...+.+.||.|+|++++..
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 455678999999988642210 0 00 1345699999999999999998653
No 88
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=64.81 E-value=28 Score=31.16 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=37.7
Q ss_pred eEEEEEEEEcCC-CceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEec
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~ 820 (858)
....++|+|.++ ..-|.+.-..+. ...+.|..-.|.||++.+|.|++....
T Consensus 20 ~~~~l~l~N~s~~~i~fKiktt~~~--~y~v~P~~G~i~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 20 QSCELTLTNPSDKPIAFKIKTTNPN--RYRVKPSYGIIEPGESVEITITFQPFD 71 (109)
T ss_dssp EEEEEEEEE-SSSEEEEEEEES-TT--TEEEESSEEEE-TTEEEEEEEEE-SSS
T ss_pred EEEEEEEECCCCCcEEEEEEcCCCc--eEEecCCCEEECCCCEEEEEEEEEecc
Confidence 445679999998 778887765554 467789999999999999999998744
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=58.61 E-value=30 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=23.9
Q ss_pred EEEEEcCCCceEEEE-eecCCcceEEEeecEEEEeCCCEEEEEEEE
Q 003005 772 RTLTNIAGNETYSVG-WSAPYGVSMKVSPTHFSIASGEKQVLNVFF 816 (858)
Q Consensus 772 ~tv~n~~~~~ty~~~-~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~ 816 (858)
.+++|.|+ ....+. +...=| =+.++...=.|+||++..+.|++
T Consensus 2 F~~~N~g~-~~L~I~~v~tsCg-Ct~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGD-SPLVITDVQTSCG-CTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCC-CcEEEEEeeEccC-CEEeeCCcceECCCCEEEEEEEC
Confidence 46778774 222222 111212 22233334569999999999874
No 90
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=55.68 E-value=60 Score=28.60 Aligned_cols=52 Identities=19% Similarity=0.306 Sum_probs=33.6
Q ss_pred cCcceEEEEEEEEcCC---CceEEEEeecCCcceEEEe---ecEEEEeCCCEEEEEEE
Q 003005 764 LNQSRTVQRTLTNIAG---NETYSVGWSAPYGVSMKVS---PTHFSIASGEKQVLNVF 815 (858)
Q Consensus 764 ~~~~~~~~~tv~n~~~---~~ty~~~~~~~~~~~v~~~---p~~~tl~~g~s~~~~v~ 815 (858)
..+......+|+|.+. ...|.+.+....|+++.-. ..+++|+++++.+|.-.
T Consensus 22 ~~g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~~~l~~~~~~~l~~~ 79 (94)
T PF07233_consen 22 VNGLLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPEQSPWQSLTLPGGQTVTLSAV 79 (94)
T ss_dssp CCCEEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--TT---EEEEE-TT-EEEEEEE
T ss_pred eCCeEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCCCCCCEEEEEcCCCEEEEEEE
Confidence 3455667788999987 5688888988889876532 23899999999887763
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=53.95 E-value=83 Score=26.99 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=14.7
Q ss_pred cEEEEeCCCEEEEEEEEEEec
Q 003005 800 THFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 800 ~~~tl~~g~s~~~~v~~~~~~ 820 (858)
...+|+||++.++..++....
T Consensus 52 ~~~~l~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 52 QEETLEPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEE-TT-EEEEEEEESS--
T ss_pred eEEEECCCCEEEEEEEECCCC
Confidence 378999999999999886554
No 92
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=51.24 E-value=15 Score=31.06 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=33.8
Q ss_pred eEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeCCccEEEE
Q 003005 794 SMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGNQGHIVNI 842 (858)
Q Consensus 794 ~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~~~~~l~i 842 (858)
.|++.|..++|..|++..|.+.+.+..... ..+.|++++....+|
T Consensus 4 ~I~i~~~~~~l~~G~~~~l~~~~~~~~~~~----~~v~w~ssn~~iatV 48 (79)
T PF02368_consen 4 SITITPTSVTLKVGQTQQLTATVTPSDGSN----SKVTWSSSNPSIATV 48 (79)
T ss_dssp SEEETTTEEECETTCEETTEEEEEEEESTT----SCEEEEESSTTTEEE
T ss_pred EEEEECCEEEEECCCEEEEEEEEEECCCcE----eEEEEEeCCCeEEEE
Confidence 578889999999999999999998887654 446666655443333
No 93
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=49.64 E-value=38 Score=42.02 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=34.1
Q ss_pred ceEEEEEEEEcCC---CceEEEEeecCCcceEEEee-------cEEEEeCCCEEEEEEEEEEec
Q 003005 767 SRTVQRTLTNIAG---NETYSVGWSAPYGVSMKVSP-------THFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 767 ~~~~~~tv~n~~~---~~ty~~~~~~~~~~~v~~~p-------~~~tl~~g~s~~~~v~~~~~~ 820 (858)
.-+++.+|+|+|+ .+.-.+.+..+.+ .+. .| +++.|+|||+++|++++...+
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIMLKPGETQTVSFPIDIEA 729 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeECCCCeEEEEEeecHHH
Confidence 3567789999998 3343444443332 111 11 267899999999999998655
No 94
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=49.30 E-value=1.3e+02 Score=31.42 Aligned_cols=62 Identities=15% Similarity=0.186 Sum_probs=39.7
Q ss_pred EEEEEEEcCC-CceEEEEee---cC-------------CcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEE
Q 003005 770 VQRTLTNIAG-NETYSVGWS---AP-------------YGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGL 832 (858)
Q Consensus 770 ~~~tv~n~~~-~~ty~~~~~---~~-------------~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~ 832 (858)
..++|.|.++ ...+.+++. .| ..-.+-++|..|+|+||+++.|.|.-.-+..++.+| .|.|
T Consensus 35 ~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IRli~lg~~~kE~~Y--Rl~~ 112 (234)
T PRK15308 35 TSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVRVISLQAPEREEAW--RVYF 112 (234)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEEEEEcCCCCcEEEE--EEEE
Confidence 4567888876 545554431 11 012577899999999999999998765554444443 4555
Q ss_pred E
Q 003005 833 F 833 (858)
Q Consensus 833 ~ 833 (858)
.
T Consensus 113 ~ 113 (234)
T PRK15308 113 E 113 (234)
T ss_pred E
Confidence 4
No 95
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=47.74 E-value=90 Score=29.22 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=46.6
Q ss_pred ceEEEEEEEEcCCCceEEEEe------ecCCcceE--EE-----eecEEEEeCCCEEEEEEEEEEecCCCC---eEEEEE
Q 003005 767 SRTVQRTLTNIAGNETYSVGW------SAPYGVSM--KV-----SPTHFSIASGEKQVLNVFFNATTSGTA---ASFGRI 830 (858)
Q Consensus 767 ~~~~~~tv~n~~~~~ty~~~~------~~~~~~~v--~~-----~p~~~tl~~g~s~~~~v~~~~~~~~~~---~~~G~i 830 (858)
...+.++++|.| ..+.++.- ....|..+ .. .+..++|+||++..+.|........+. .---.|
T Consensus 19 ~~~~~l~~tN~s-~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~~~~~~~~~~~~~~~l 97 (131)
T PF14016_consen 19 QRHATLTFTNTS-DTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSNVGSGGGCKPVTPAGL 97 (131)
T ss_pred ccEEEEEEEECC-CCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEecCCCCCCcCccccCEE
Confidence 345677889988 44444432 11222211 11 255799999999999999987665332 222335
Q ss_pred EEEe-CCccEEEEeEEE
Q 003005 831 GLFG-NQGHIVNIPLSV 846 (858)
Q Consensus 831 ~~~~-~~~~~l~iP~~~ 846 (858)
.+.. ++...+.+|+-.
T Consensus 98 ~V~~p~~~~~~~v~~~~ 114 (131)
T PF14016_consen 98 TVTPPGGTAPVTVPWPG 114 (131)
T ss_pred EEECCCCCccEEEeCCC
Confidence 5554 445677777644
No 96
>PLN03080 Probable beta-xylosidase; Provisional
Probab=46.83 E-value=60 Score=40.33 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=42.7
Q ss_pred eEEEEEEEEcCC-C--ceEEEEeecCCc-c--eE-E-EeecEEEEeCCCEEEEEEEEEE-ecC-----CCCeE--EEE-E
Q 003005 768 RTVQRTLTNIAG-N--ETYSVGWSAPYG-V--SM-K-VSPTHFSIASGEKQVLNVFFNA-TTS-----GTAAS--FGR-I 830 (858)
Q Consensus 768 ~~~~~tv~n~~~-~--~ty~~~~~~~~~-~--~v-~-~~p~~~tl~~g~s~~~~v~~~~-~~~-----~~~~~--~G~-i 830 (858)
.+++.+|+|+|. . +.-.+-+..+.. . .+ + ..=+++.|+|||+++|+++++. ... .+.|. .|. .
T Consensus 686 ~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~G~y~ 765 (779)
T PLN03080 686 FNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPLGDHV 765 (779)
T ss_pred EEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeCccEE
Confidence 467889999998 3 333333333321 0 00 0 1123788999999999999986 332 12222 133 3
Q ss_pred EEEeCCccEEEEe
Q 003005 831 GLFGNQGHIVNIP 843 (858)
Q Consensus 831 ~~~~~~~~~l~iP 843 (858)
.+-++..|.|+++
T Consensus 766 l~vG~~~~~~~~~ 778 (779)
T PLN03080 766 LMLGDLEHSLSIE 778 (779)
T ss_pred EEEeCCccceEEe
Confidence 3335556666664
No 97
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=45.72 E-value=20 Score=34.25 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=40.3
Q ss_pred CccccCCCCCCccccccceEEEEEeccccccCcchHHHHHHHHHhCCCeEEEEEECCCC
Q 003005 449 YVGECQDSSNFNQDLVQGNLLICSYSIRFVLGLSTIKQAFETAKNLSAAGIVFYMDPFV 507 (858)
Q Consensus 449 ~~~~c~~~~~~~~~~~~Gkivl~~~~~~~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 507 (858)
....|+... +.-...|.+.+++| |.|+|..|..+++++||.++|+..+..+
T Consensus 73 Pp~aC~elr--N~~f~~d~vaL~eR------GeCSFl~Ktl~~e~aGa~aiiitd~~~~ 123 (193)
T KOG3920|consen 73 PPHACEELR--NEIFAPDSVALMER------GECSFLVKTLNGEKAGATAIIITDSQNY 123 (193)
T ss_pred ChhHHHHHh--hcccCCCcEEEEec------CCceeeehhhhhhhcCceEEEEecCCCC
Confidence 456776432 23456789999999 7899999999999999999999876654
No 98
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=45.65 E-value=80 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=33.9
Q ss_pred ceEEEEEEEEcCC-C-ceEEEEe--ec--CCcce---EEEeecEEEEeCCCEEEEEEEEEEecC
Q 003005 767 SRTVQRTLTNIAG-N-ETYSVGW--SA--PYGVS---MKVSPTHFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 767 ~~~~~~tv~n~~~-~-~ty~~~~--~~--~~~~~---v~~~p~~~tl~~g~s~~~~v~~~~~~~ 821 (858)
..++..+++|.++ . .+-++.. .. -.|+. +......++|+||++.++.+++.+.+.
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQY 79 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHSH
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEceeE
Confidence 4566778899887 4 3322222 11 24653 455566899999999999999997774
No 99
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=43.16 E-value=86 Score=34.24 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=31.2
Q ss_pred eEEEEEEEEcCC-CceEEEEeecC----CcceEEEeec--------------EEEEeCCCEEEEEEEEEEe
Q 003005 768 RTVQRTLTNIAG-NETYSVGWSAP----YGVSMKVSPT--------------HFSIASGEKQVLNVFFNAT 819 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~~~~~~~----~~~~v~~~p~--------------~~tl~~g~s~~~~v~~~~~ 819 (858)
..++++|+|..+ ..+..+....| ..++|.+... .|+|+||+++++.+.+.+.
T Consensus 244 ~~~~itv~N~~~~~v~v~v~d~iPvs~~~~I~V~~~~~~~~~~~~~~g~~~W~~~l~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 244 YEYTITVRNNKDEPVTVTVEDQIPVSEDEDIKVELLEPPEPNEDEKDGILEWKVTLPPGESRTLEFSYEVE 314 (317)
T ss_pred EEEEEEEECCCCCCEEEEEEeCCCCCCCceEEEEEcCCCCCcccCCCCEEEEEEEECCCCEEEEEEEEEEE
Confidence 345677888776 55555544333 2233333211 5788888888888877764
No 100
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.81 E-value=57 Score=39.17 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred EEeecCCcceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEEEEEEEEeC
Q 003005 785 VGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASFGRIGLFGN 835 (858)
Q Consensus 785 ~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~G~i~~~~~ 835 (858)
+..-...+.++...|+.++|.|....++++|+.+.+..+.++||.|++..+
T Consensus 755 lelATlgdLKlve~p~p~~Laph~f~~ikatvKVsStenGvIfGnIvY~~~ 805 (948)
T KOG1058|consen 755 LELATLGDLKLVERPTPFSLAPHDFVNIKATVKVSSTENGVIFGNIVYDTS 805 (948)
T ss_pred eeeeeccCceeeecCCCcccCcccceeEEEEEEEeeccCcEEEEEEEecCc
Confidence 333344567888889999999999999999999999999999999999863
No 101
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=37.96 E-value=1.1e+02 Score=27.28 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=38.2
Q ss_pred cceEEEEEEEEcCC---CceEEEEeecCCcceEEEe---ecEEEEeCCCEEEEEEE
Q 003005 766 QSRTVQRTLTNIAG---NETYSVGWSAPYGVSMKVS---PTHFSIASGEKQVLNVF 815 (858)
Q Consensus 766 ~~~~~~~tv~n~~~---~~ty~~~~~~~~~~~v~~~---p~~~tl~~g~s~~~~v~ 815 (858)
+......+|+|... ...|.+.+....|+++.-. ...++|+++++.+|.-.
T Consensus 32 g~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~~~~w~~l~l~~~~~~~l~~~ 87 (101)
T cd09030 32 GLLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPEQEPWQSLTLPGGQTVTLQAV 87 (101)
T ss_pred CeEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCCCCCCEEEEECCCCeEEEEEE
Confidence 44566778999885 6788888888888877643 45899999998887653
No 102
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=36.46 E-value=15 Score=16.97 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=4.2
Q ss_pred cccccC
Q 003005 576 YYSARG 581 (858)
Q Consensus 576 ~fSS~G 581 (858)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 103
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.89 E-value=44 Score=24.47 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHccc
Q 003005 642 AALIKQKFPSFSPSAIASALSTSA 665 (858)
Q Consensus 642 aALl~q~~P~lsp~~ik~~L~~TA 665 (858)
+--|++.||+++++.|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999996543
No 104
>PRK15019 CsdA-binding activator; Provisional
Probab=29.32 E-value=53 Score=31.63 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=27.9
Q ss_pred eeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 626 AMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 626 ~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
..+.|.| =|+.|-|.+|||.+.+-..+|+||.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999876
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=27.84 E-value=59 Score=30.96 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.5
Q ss_pred eeecccCchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003005 626 AMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660 (858)
Q Consensus 626 ~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~ 660 (858)
..+.|.| =|+.|-|++|||++.+-..+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 589999999999999999999998753
No 106
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=26.96 E-value=74 Score=26.22 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.1
Q ss_pred cEEEEeCCCEEEEEEEEEEec
Q 003005 800 THFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 800 ~~~tl~~g~s~~~~v~~~~~~ 820 (858)
+++.|+||+++++++++++.+
T Consensus 25 ~rv~l~pGes~~v~~~l~~~~ 45 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPED 45 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHHH
T ss_pred EEEEECCCCEEEEEEEECHHH
Confidence 367899999999999998755
No 107
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=26.74 E-value=5.3e+02 Score=24.40 Aligned_cols=82 Identities=12% Similarity=0.073 Sum_probs=48.9
Q ss_pred CCCCeEEEeecCcceEEEEEEEEcCC----CceEEEEeecCCc--ceEEEeecEEEEeCCCEEEEEEEEEEecCCCCeEE
Q 003005 754 LNLPSITIARLNQSRTVQRTLTNIAG----NETYSVGWSAPYG--VSMKVSPTHFSIASGEKQVLNVFFNATTSGTAASF 827 (858)
Q Consensus 754 ~n~~si~~~~~~~~~~~~~tv~n~~~----~~ty~~~~~~~~~--~~v~~~p~~~tl~~g~s~~~~v~~~~~~~~~~~~~ 827 (858)
|.+.++......+...+..+|.|..+ ..+.+..+....+ .-.+.+...+.++|++...+.|.+.-......-|.
T Consensus 30 L~l~~v~~~~~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~~i~~~~~~lk~G~Y~ 109 (140)
T PF11797_consen 30 LKLGKVKPGQINGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNFPIPLGGKKLKPGKYT 109 (140)
T ss_pred cEEeeeeeeEECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEeEecCCCcCccCCEEE
Confidence 34445555555556677788899876 4555556554443 33344556789999999999887743333333333
Q ss_pred EEEEEEeC
Q 003005 828 GRIGLFGN 835 (858)
Q Consensus 828 G~i~~~~~ 835 (858)
=.+.++++
T Consensus 110 l~~~~~~~ 117 (140)
T PF11797_consen 110 LKITAKSG 117 (140)
T ss_pred EEEEEEcC
Confidence 34445443
No 108
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.18 E-value=5.4e+02 Score=25.73 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=34.2
Q ss_pred ceEEEEEEEEcCCCceEEEEeec----CCcceEE---EeecEEEEeCCCEEEEEEEEEEec
Q 003005 767 SRTVQRTLTNIAGNETYSVGWSA----PYGVSMK---VSPTHFSIASGEKQVLNVFFNATT 820 (858)
Q Consensus 767 ~~~~~~tv~n~~~~~ty~~~~~~----~~~~~v~---~~p~~~tl~~g~s~~~~v~~~~~~ 820 (858)
.-+++++|.|.|...-|++++.. +...++. .+-+-=+|+||++.+..+++.+..
T Consensus 39 ~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK 99 (181)
T ss_pred EEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee
Confidence 34678889999985566666543 1222211 111123789999999999998655
No 109
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=24.98 E-value=71 Score=30.42 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=27.9
Q ss_pred eeecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 626 AMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 626 ~~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
..+.|.| =|+.|-|.+|||.+.+-..+|+||.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445666 68999999999999999999999865
No 110
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=24.65 E-value=4e+02 Score=23.99 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=29.6
Q ss_pred eEEEEEEEEcCC-CceEE---EEeecCCcceEEEe---------ecEEEEeCCCEEEEEEEEEEecCCCC
Q 003005 768 RTVQRTLTNIAG-NETYS---VGWSAPYGVSMKVS---------PTHFSIASGEKQVLNVFFNATTSGTA 824 (858)
Q Consensus 768 ~~~~~tv~n~~~-~~ty~---~~~~~~~~~~v~~~---------p~~~tl~~g~s~~~~v~~~~~~~~~~ 824 (858)
..+.++|+|.++ ...+. ..+....|-..... ...-+|+||++.+..+-|.+|+....
T Consensus 38 v~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~ 107 (123)
T PF11611_consen 38 VVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKP 107 (123)
T ss_dssp EEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG
T ss_pred EEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCcc
Confidence 356778899886 33332 12222222222211 13579999999999999999987543
No 111
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=23.45 E-value=3.3e+02 Score=22.49 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=24.7
Q ss_pred EEEEcCCCceEEEEeecCCcceEEEeecEEEEeCCCEEEEEEEEE
Q 003005 773 TLTNIAGNETYSVGWSAPYGVSMKVSPTHFSIASGEKQVLNVFFN 817 (858)
Q Consensus 773 tv~n~~~~~ty~~~~~~~~~~~v~~~p~~~tl~~g~s~~~~v~~~ 817 (858)
.+.++. +.+|++.+..+.-.... ...|+|.+|++.+++|+++
T Consensus 41 ~~~~l~-~g~Y~l~v~~~g~~~~~--~~~v~v~~~~~~~~~i~L~ 82 (82)
T PF13620_consen 41 SFEGLP-PGTYTLRVSAPGYQPQT--QENVTVTAGQTTTVDITLE 82 (82)
T ss_dssp EEEEE--SEEEEEEEEBTTEE-EE--EEEEEESSSSEEE--EEEE
T ss_pred EEEccC-CEeEEEEEEECCcceEE--EEEEEEeCCCEEEEEEEEC
Confidence 444555 46787777665422222 2368999999999888764
No 112
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.47 E-value=3.3e+02 Score=32.17 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=15.7
Q ss_pred EEEEeCCCEEEEEEEEEEecC
Q 003005 801 HFSIASGEKQVLNVFFNATTS 821 (858)
Q Consensus 801 ~~tl~~g~s~~~~v~~~~~~~ 821 (858)
.|+|+||++++|.+.+.+.-+
T Consensus 499 ~l~L~pg~~~~l~~~y~v~~P 519 (525)
T TIGR02231 499 KLTLKPGEKRDLKFKFKVEHP 519 (525)
T ss_pred EEEECCCCeEEEEEEEEEecC
Confidence 478888888888877776544
No 113
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=22.43 E-value=2.8e+02 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=33.5
Q ss_pred EEEEEcCC---CceEEEEeecCCcceE--EEeecEEEEeCCCEEEEEEE
Q 003005 772 RTLTNIAG---NETYSVGWSAPYGVSM--KVSPTHFSIASGEKQVLNVF 815 (858)
Q Consensus 772 ~tv~n~~~---~~ty~~~~~~~~~~~v--~~~p~~~tl~~g~s~~~~v~ 815 (858)
-+|+|... ..+|.+-+....|+++ ..+|.+|+++++++.++..+
T Consensus 60 s~l~N~~q~pv~v~YrfYWYD~~Gle~~~~es~~si~l~~~e~vsi~~~ 108 (123)
T COG5633 60 SVLKNKRQEPVTVHYRFYWYDAQGLEQNPLESPRSITLPGHEAVSIYLS 108 (123)
T ss_pred EEEeccccCceEEEEEEEEEcCCCceeccccCCcceEecCCceEEEEcc
Confidence 46777665 6788888887778765 45688999999998887653
No 114
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=22.27 E-value=91 Score=29.13 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=26.2
Q ss_pred eecccCchhHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003005 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASA 660 (858)
Q Consensus 627 ~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~~ 660 (858)
.+.|.|= |+.|-|++|||.+.+-..+|+||.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998764
No 115
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=21.41 E-value=79 Score=21.99 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=10.8
Q ss_pred chhHHHHHHHHHH
Q 003005 633 MAAPHIAGLAALI 645 (858)
Q Consensus 633 MAaP~VAG~aALl 645 (858)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998844
No 116
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.33 E-value=85 Score=24.67 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=22.9
Q ss_pred ceeecccCchhHHHHHHHH------HHHHhCCCCCHHHHHHHHH
Q 003005 625 FAMMSGTSMAAPHIAGLAA------LIKQKFPSFSPSAIASALS 662 (858)
Q Consensus 625 y~~~sGTSMAaP~VAG~aA------Ll~q~~P~lsp~~ik~~L~ 662 (858)
--.+.||=+..=.|....+ -+.+.||++++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 3456677776666555432 3456899999999999884
No 117
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.19 E-value=88 Score=29.91 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=25.7
Q ss_pred eecccCchhHHHHHHHHHHHHhCCCCCHHHHHH
Q 003005 627 MMSGTSMAAPHIAGLAALIKQKFPSFSPSAIAS 659 (858)
Q Consensus 627 ~~sGTSMAaP~VAG~aALl~q~~P~lsp~~ik~ 659 (858)
.+.|=|= |+.|-|.+|++++.+-..+|++|.+
T Consensus 73 ~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 73 HFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3444443 6899999999999999999999753
No 118
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.29 E-value=1.4e+02 Score=21.81 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHccc
Q 003005 641 LAALIKQKFPSFSPSAIASALSTSA 665 (858)
Q Consensus 641 ~aALl~q~~P~lsp~~ik~~L~~TA 665 (858)
.+..|++.||+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998543
No 119
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=20.10 E-value=2.7e+02 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=29.4
Q ss_pred cceEEEEEEEEcCC-CceEEEEe---e----------cCCcceEEEe-ecEEEEeCCCEEEEEEE
Q 003005 766 QSRTVQRTLTNIAG-NETYSVGW---S----------APYGVSMKVS-PTHFSIASGEKQVLNVF 815 (858)
Q Consensus 766 ~~~~~~~tv~n~~~-~~ty~~~~---~----------~~~~~~v~~~-p~~~tl~~g~s~~~~v~ 815 (858)
+..+.+++|+|.++ +...--+. + ...|-.+.+. -+.+.+.||++++|++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 34556778999997 43221110 1 1224344441 34788899999999884
Done!