Query 003007
Match_columns 858
No_of_seqs 587 out of 3323
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 15:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 2.8E-75 6.1E-80 646.6 25.6 517 130-836 2-523 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 7.3E-46 1.6E-50 336.6 10.5 97 694-790 1-97 (97)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-30 4E-35 288.5 25.0 241 114-354 3-351 (352)
4 KOG0145 RNA-binding protein EL 100.0 4.2E-31 9E-36 269.7 15.0 214 188-427 37-268 (360)
5 KOG0117 Heterogeneous nuclear 100.0 3.4E-29 7.3E-34 272.1 26.2 244 106-356 75-335 (506)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-29 2.6E-34 299.7 24.7 293 18-358 39-370 (562)
7 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-29 4E-34 298.1 24.4 266 116-381 2-312 (562)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.2E-27 6.9E-32 262.6 33.4 159 191-353 2-172 (352)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.1E-28 6.7E-33 282.6 22.9 262 115-380 3-420 (481)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 3.5E-28 7.6E-33 282.9 22.2 236 111-354 55-309 (578)
11 KOG0110 RNA-binding protein (R 100.0 8E-29 1.7E-33 282.1 10.4 326 21-379 246-638 (725)
12 TIGR01659 sex-lethal sex-letha 99.9 7.8E-27 1.7E-31 259.1 20.6 163 188-354 103-277 (346)
13 KOG0148 Apoptosis-promoting RN 99.9 1.5E-26 3.2E-31 238.3 20.4 214 114-354 6-240 (321)
14 KOG0145 RNA-binding protein EL 99.9 3.6E-27 7.9E-32 240.9 12.2 246 90-352 37-358 (360)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.1E-25 2.4E-30 261.3 21.2 163 190-352 273-480 (481)
16 TIGR01622 SF-CC1 splicing fact 99.9 3.4E-24 7.3E-29 246.9 24.8 238 114-351 89-447 (457)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.2E-24 1.1E-28 248.5 23.5 162 190-351 293-501 (509)
18 TIGR01645 half-pint poly-U bin 99.9 1.8E-24 4E-29 252.3 19.2 163 191-353 106-285 (612)
19 TIGR01622 SF-CC1 splicing fact 99.9 9E-23 1.9E-27 235.1 19.4 163 188-351 85-265 (457)
20 KOG0144 RNA-binding protein CU 99.9 2.4E-23 5.1E-28 225.8 12.4 164 190-356 32-210 (510)
21 TIGR01648 hnRNP-R-Q heterogene 99.9 1.2E-22 2.7E-27 236.7 19.1 178 191-378 57-257 (578)
22 KOG0127 Nucleolar protein fibr 99.9 3.6E-22 7.8E-27 221.5 19.1 240 115-354 6-380 (678)
23 KOG0144 RNA-binding protein CU 99.9 2.1E-22 4.6E-27 218.4 12.0 240 114-353 34-505 (510)
24 KOG0117 Heterogeneous nuclear 99.9 9.3E-22 2E-26 214.5 16.0 182 190-381 81-286 (506)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-21 3.8E-26 227.3 19.1 164 187-352 170-375 (509)
26 TIGR01645 half-pint poly-U bin 99.9 1.6E-20 3.4E-25 219.5 24.3 154 112-265 105-282 (612)
27 KOG0123 Polyadenylate-binding 99.9 1.1E-20 2.5E-25 211.2 19.1 228 117-355 4-249 (369)
28 KOG0131 Splicing factor 3b, su 99.8 4.1E-21 9E-26 188.7 11.4 163 190-355 7-180 (203)
29 KOG0109 RNA-binding protein LA 99.8 3.9E-21 8.5E-26 200.1 10.2 148 193-352 3-150 (346)
30 KOG0123 Polyadenylate-binding 99.8 3E-20 6.4E-25 207.9 13.3 276 24-356 40-353 (369)
31 KOG0127 Nucleolar protein fibr 99.8 7.4E-20 1.6E-24 203.2 16.0 161 193-353 6-197 (678)
32 KOG0110 RNA-binding protein (R 99.8 1.4E-19 3.1E-24 207.0 14.3 162 193-354 516-695 (725)
33 KOG0148 Apoptosis-promoting RN 99.7 7.5E-18 1.6E-22 174.3 11.7 160 190-379 4-189 (321)
34 KOG0124 Polypyrimidine tract-b 99.7 1.1E-17 2.5E-22 178.0 10.7 156 192-349 113-287 (544)
35 KOG0146 RNA-binding protein ET 99.7 8.2E-18 1.8E-22 173.3 7.5 166 191-356 18-369 (371)
36 KOG4206 Spliceosomal protein s 99.7 1.7E-16 3.7E-21 161.9 16.0 161 190-350 7-220 (221)
37 TIGR01659 sex-lethal sex-letha 99.7 9.5E-17 2.1E-21 178.7 15.0 153 114-266 107-274 (346)
38 KOG4212 RNA-binding protein hn 99.7 1.2E-13 2.7E-18 150.5 30.4 158 192-349 44-291 (608)
39 KOG1190 Polypyrimidine tract-b 99.6 1.2E-15 2.6E-20 165.4 13.5 239 114-353 28-374 (492)
40 KOG0147 Transcriptional coacti 99.6 1.2E-15 2.6E-20 171.3 13.4 237 114-350 179-526 (549)
41 KOG4205 RNA-binding protein mu 99.6 1.5E-15 3.2E-20 165.3 9.6 161 191-353 5-177 (311)
42 KOG0147 Transcriptional coacti 99.6 6.2E-16 1.3E-20 173.6 5.3 161 188-349 175-355 (549)
43 KOG0124 Polypyrimidine tract-b 99.6 4.2E-14 9.1E-19 151.1 15.5 238 112-349 111-532 (544)
44 KOG0105 Alternative splicing f 99.6 2.9E-14 6.3E-19 140.7 12.5 149 190-340 4-176 (241)
45 KOG1457 RNA binding protein (c 99.4 4.4E-13 9.6E-18 135.9 11.5 149 191-339 33-273 (284)
46 KOG1190 Polypyrimidine tract-b 99.4 3.3E-12 7.3E-17 139.0 18.4 161 192-352 297-491 (492)
47 KOG0106 Alternative splicing f 99.4 1.2E-13 2.6E-18 142.5 6.4 149 193-347 2-166 (216)
48 PLN03134 glycine-rich RNA-bind 99.4 6.1E-13 1.3E-17 130.9 10.1 78 276-353 33-115 (144)
49 PLN03134 glycine-rich RNA-bind 99.4 1.3E-12 2.8E-17 128.5 11.6 80 189-268 31-115 (144)
50 KOG0109 RNA-binding protein LA 99.4 3.5E-13 7.6E-18 141.2 7.7 146 114-268 2-151 (346)
51 KOG1456 Heterogeneous nuclear 99.4 1.2E-11 2.6E-16 133.2 18.4 235 115-352 32-363 (494)
52 KOG1548 Transcription elongati 99.4 1.1E-11 2.3E-16 133.1 14.9 164 189-352 131-352 (382)
53 PF00076 RRM_1: RNA recognitio 99.3 9.3E-12 2E-16 105.3 8.0 66 280-345 1-70 (70)
54 KOG0107 Alternative splicing f 99.3 4.9E-12 1.1E-16 124.5 6.8 76 277-352 10-85 (195)
55 PF00076 RRM_1: RNA recognitio 99.2 2E-11 4.2E-16 103.3 7.9 66 195-260 1-70 (70)
56 KOG4212 RNA-binding protein hn 99.2 2.2E-10 4.7E-15 125.6 17.7 69 278-348 537-607 (608)
57 KOG0120 Splicing factor U2AF, 99.2 8E-11 1.7E-15 134.4 14.3 164 189-352 286-492 (500)
58 COG0724 RNA-binding proteins ( 99.2 1.1E-10 2.4E-15 121.6 12.2 119 192-310 115-258 (306)
59 KOG0107 Alternative splicing f 99.2 2.7E-11 5.8E-16 119.4 6.2 77 191-267 9-85 (195)
60 KOG0125 Ataxin 2-binding prote 99.2 6.9E-11 1.5E-15 126.0 8.4 99 250-352 73-174 (376)
61 KOG4660 Protein Mei2, essentia 99.1 5.2E-11 1.1E-15 134.8 6.9 163 188-353 71-251 (549)
62 KOG0131 Splicing factor 3b, su 99.1 7.2E-11 1.6E-15 117.1 7.0 155 115-269 10-179 (203)
63 KOG4211 Splicing factor hnRNP- 99.1 4.3E-10 9.2E-15 125.7 13.6 156 192-350 10-180 (510)
64 KOG0121 Nuclear cap-binding pr 99.1 8.2E-11 1.8E-15 110.5 6.4 75 190-264 34-113 (153)
65 KOG0122 Translation initiation 99.1 1.4E-10 3E-15 119.7 8.5 77 276-352 188-269 (270)
66 KOG0114 Predicted RNA-binding 99.1 1.9E-10 4E-15 104.5 7.8 78 190-267 16-95 (124)
67 PLN03120 nucleic acid binding 99.1 2.2E-10 4.8E-15 121.4 9.5 74 277-351 4-79 (260)
68 KOG0122 Translation initiation 99.1 2.9E-10 6.3E-15 117.3 9.7 78 190-267 187-269 (270)
69 KOG0114 Predicted RNA-binding 99.1 3.8E-10 8.2E-15 102.5 8.7 80 277-356 18-99 (124)
70 KOG0121 Nuclear cap-binding pr 99.1 1.4E-10 3.1E-15 108.9 6.0 75 276-350 35-114 (153)
71 smart00362 RRM_2 RNA recogniti 99.1 4.2E-10 9.2E-15 93.8 8.4 69 279-347 1-72 (72)
72 PLN03120 nucleic acid binding 99.1 4E-10 8.6E-15 119.4 9.7 76 192-268 4-81 (260)
73 PF14259 RRM_6: RNA recognitio 99.1 3.7E-10 7.9E-15 96.5 7.6 66 280-345 1-70 (70)
74 KOG4205 RNA-binding protein mu 99.1 6.5E-10 1.4E-14 121.5 10.9 157 114-271 6-180 (311)
75 PF13893 RRM_5: RNA recognitio 99.0 6.4E-10 1.4E-14 91.3 7.9 56 294-349 1-56 (56)
76 KOG0125 Ataxin 2-binding prote 99.0 4.3E-10 9.4E-15 120.1 8.5 79 189-267 93-174 (376)
77 PF14259 RRM_6: RNA recognitio 99.0 7.3E-10 1.6E-14 94.6 7.8 66 195-260 1-70 (70)
78 PLN03213 repressor of silencin 99.0 8.6E-10 1.9E-14 122.3 8.6 77 276-352 9-88 (759)
79 KOG0105 Alternative splicing f 99.0 9.7E-10 2.1E-14 109.1 7.9 77 276-352 5-83 (241)
80 KOG1456 Heterogeneous nuclear 99.0 5.5E-09 1.2E-13 113.0 14.2 172 183-355 22-202 (494)
81 KOG0149 Predicted RNA-binding 99.0 8.1E-10 1.7E-14 113.8 7.4 76 188-264 8-88 (247)
82 smart00362 RRM_2 RNA recogniti 99.0 2E-09 4.3E-14 89.8 7.9 69 194-262 1-72 (72)
83 KOG0113 U1 small nuclear ribon 98.9 2.9E-09 6.2E-14 112.7 9.6 89 265-353 89-182 (335)
84 KOG1365 RNA-binding protein Fu 98.9 4.8E-09 1E-13 113.7 11.1 161 192-353 161-363 (508)
85 cd00590 RRM RRM (RNA recogniti 98.9 4.5E-09 9.7E-14 88.1 8.7 70 279-348 1-74 (74)
86 KOG4207 Predicted splicing fac 98.9 1E-09 2.2E-14 110.8 5.3 76 277-352 13-93 (256)
87 KOG4207 Predicted splicing fac 98.9 1.6E-09 3.6E-14 109.2 6.5 77 189-265 10-91 (256)
88 smart00360 RRM RNA recognition 98.9 3.5E-09 7.6E-14 87.8 7.4 66 282-347 1-71 (71)
89 KOG4211 Splicing factor hnRNP- 98.9 4.4E-08 9.5E-13 109.9 17.9 232 115-348 11-354 (510)
90 PLN03213 repressor of silencin 98.9 3E-09 6.4E-14 118.2 8.6 117 190-309 8-135 (759)
91 PLN03121 nucleic acid binding 98.9 4.9E-09 1.1E-13 109.7 9.1 73 277-350 5-79 (243)
92 KOG0149 Predicted RNA-binding 98.9 2.3E-09 4.9E-14 110.5 6.4 77 276-353 11-92 (247)
93 KOG0111 Cyclophilin-type pepti 98.9 1.3E-09 2.9E-14 110.5 4.4 80 276-355 9-93 (298)
94 KOG0113 U1 small nuclear ribon 98.9 4.9E-09 1.1E-13 111.0 8.6 79 187-265 96-179 (335)
95 PF13893 RRM_5: RNA recognitio 98.9 4E-09 8.6E-14 86.6 6.1 56 209-264 1-56 (56)
96 PLN03121 nucleic acid binding 98.8 7.9E-09 1.7E-13 108.1 8.9 72 192-264 5-78 (243)
97 smart00360 RRM RNA recognition 98.8 8.8E-09 1.9E-13 85.4 7.2 66 197-262 1-71 (71)
98 cd00590 RRM RRM (RNA recogniti 98.8 1.4E-08 3.1E-13 85.0 8.1 70 194-263 1-74 (74)
99 COG0724 RNA-binding proteins ( 98.8 1.2E-08 2.6E-13 106.3 9.0 75 277-351 115-194 (306)
100 KOG0111 Cyclophilin-type pepti 98.8 3.3E-09 7.1E-14 107.8 4.1 81 190-270 8-93 (298)
101 KOG0130 RNA-binding protein RB 98.8 8.8E-09 1.9E-13 97.8 6.1 79 274-352 69-152 (170)
102 KOG0108 mRNA cleavage and poly 98.7 2.3E-08 4.9E-13 114.0 7.9 78 278-355 19-101 (435)
103 KOG0126 Predicted RNA-binding 98.7 3.3E-09 7.2E-14 105.2 0.6 74 276-349 34-112 (219)
104 smart00361 RRM_1 RNA recogniti 98.7 4.4E-08 9.5E-13 84.5 7.1 56 291-346 2-69 (70)
105 KOG4206 Spliceosomal protein s 98.7 3.4E-08 7.4E-13 101.7 7.2 76 278-353 10-91 (221)
106 KOG0108 mRNA cleavage and poly 98.7 2.7E-08 5.9E-13 113.3 6.9 76 193-268 19-99 (435)
107 KOG0130 RNA-binding protein RB 98.7 3E-08 6.6E-13 94.1 5.8 79 189-267 69-152 (170)
108 KOG0129 Predicted RNA-binding 98.6 2.6E-07 5.7E-12 104.5 13.5 156 189-348 256-450 (520)
109 KOG0126 Predicted RNA-binding 98.6 4.5E-09 9.7E-14 104.3 -0.9 77 191-267 34-115 (219)
110 KOG0112 Large RNA-binding prot 98.6 2.1E-08 4.6E-13 118.7 4.1 158 190-354 370-533 (975)
111 KOG0132 RNA polymerase II C-te 98.6 9.5E-08 2.1E-12 111.6 7.3 76 192-268 421-496 (894)
112 KOG0132 RNA polymerase II C-te 98.6 1.3E-07 2.8E-12 110.6 8.3 80 276-356 420-499 (894)
113 KOG0146 RNA-binding protein ET 98.5 2.1E-07 4.5E-12 97.2 6.2 79 191-269 284-367 (371)
114 smart00361 RRM_1 RNA recogniti 98.5 3.2E-07 7E-12 79.1 6.4 56 206-261 2-69 (70)
115 KOG0120 Splicing factor U2AF, 98.4 4.1E-07 8.8E-12 104.6 8.1 163 189-353 172-370 (500)
116 KOG0153 Predicted RNA-binding 98.4 5.5E-07 1.2E-11 97.4 7.5 83 184-267 220-303 (377)
117 KOG0153 Predicted RNA-binding 98.4 5.5E-07 1.2E-11 97.5 7.3 77 274-351 225-302 (377)
118 KOG0128 RNA-binding protein SA 98.4 8.6E-08 1.9E-12 113.3 0.3 139 193-352 668-815 (881)
119 KOG4454 RNA binding protein (R 98.3 2E-07 4.3E-12 95.2 2.0 139 190-342 7-153 (267)
120 KOG0415 Predicted peptidyl pro 98.3 7.4E-07 1.6E-11 96.3 5.7 77 276-352 238-319 (479)
121 KOG4210 Nuclear localization s 98.3 1.1E-06 2.4E-11 95.8 6.3 164 190-354 86-266 (285)
122 KOG0415 Predicted peptidyl pro 98.2 1.5E-06 3.2E-11 94.0 5.3 78 189-266 236-318 (479)
123 KOG0106 Alternative splicing f 98.2 2.5E-06 5.5E-11 88.7 6.2 148 114-264 1-168 (216)
124 KOG0226 RNA-binding proteins [ 98.1 1.6E-06 3.5E-11 90.5 4.2 157 195-351 99-269 (290)
125 KOG4208 Nucleolar RNA-binding 98.1 8.4E-06 1.8E-10 83.1 7.8 78 275-352 47-130 (214)
126 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.4E-06 1.2E-10 94.0 6.6 74 278-351 406-484 (940)
127 KOG4661 Hsp27-ERE-TATA-binding 98.0 1.4E-05 3E-10 90.8 8.1 76 190-265 403-483 (940)
128 KOG1457 RNA binding protein (c 98.0 1.8E-05 3.9E-10 81.3 7.9 78 277-354 34-120 (284)
129 KOG4208 Nucleolar RNA-binding 98.0 1.6E-05 3.5E-10 81.1 7.5 79 188-266 45-129 (214)
130 KOG2193 IGF-II mRNA-binding pr 98.0 1E-06 2.2E-11 97.0 -1.5 149 193-350 2-155 (584)
131 KOG0151 Predicted splicing reg 97.9 1.3E-05 2.8E-10 93.4 6.0 78 274-351 171-256 (877)
132 KOG0151 Predicted splicing reg 97.9 2.2E-05 4.7E-10 91.6 7.7 83 184-266 166-256 (877)
133 PF03467 Smg4_UPF3: Smg-4/UPF3 97.9 9.5E-06 2.1E-10 82.7 3.9 90 692-781 5-99 (176)
134 KOG0533 RRM motif-containing p 97.8 4.1E-05 8.9E-10 81.3 8.2 78 276-353 82-163 (243)
135 KOG0533 RRM motif-containing p 97.8 3.8E-05 8.1E-10 81.6 7.7 76 191-266 82-161 (243)
136 KOG1548 Transcription elongati 97.8 0.00016 3.4E-09 78.8 12.3 154 112-265 132-350 (382)
137 KOG1365 RNA-binding protein Fu 97.8 0.00023 5E-09 78.2 12.4 143 190-333 58-225 (508)
138 KOG0129 Predicted RNA-binding 97.7 0.00027 5.8E-09 80.7 12.2 150 98-248 244-432 (520)
139 KOG0116 RasGAP SH3 binding pro 97.6 6E-05 1.3E-09 86.0 5.5 72 192-264 288-364 (419)
140 PF11608 Limkain-b1: Limkain b 97.6 0.00021 4.5E-09 63.5 7.6 70 278-352 3-77 (90)
141 KOG0116 RasGAP SH3 binding pro 97.6 8E-05 1.7E-09 85.0 6.5 75 278-353 289-368 (419)
142 KOG4209 Splicing factor RNPS1, 97.6 8.2E-05 1.8E-09 79.0 5.8 79 273-352 97-180 (231)
143 PF11608 Limkain-b1: Limkain b 97.6 0.00029 6.4E-09 62.6 7.6 68 193-265 3-75 (90)
144 KOG0112 Large RNA-binding prot 97.5 0.0002 4.3E-09 86.0 7.5 152 114-267 372-531 (975)
145 KOG0226 RNA-binding proteins [ 97.4 0.00028 6E-09 74.2 6.2 75 190-264 188-267 (290)
146 PF04059 RRM_2: RNA recognitio 97.4 0.00072 1.6E-08 62.3 8.2 73 193-265 2-85 (97)
147 KOG4676 Splicing factor, argin 97.3 9.6E-05 2.1E-09 81.4 1.6 157 193-351 8-225 (479)
148 KOG4454 RNA binding protein (R 97.2 0.00019 4.2E-09 73.8 2.7 75 276-351 8-86 (267)
149 PF08777 RRM_3: RNA binding mo 97.2 0.00072 1.6E-08 63.3 6.2 69 279-348 3-76 (105)
150 KOG4307 RNA binding protein RB 97.2 0.00063 1.4E-08 79.5 6.9 159 191-350 310-512 (944)
151 KOG4209 Splicing factor RNPS1, 97.2 0.00048 1E-08 73.2 5.1 77 188-265 97-178 (231)
152 KOG4210 Nuclear localization s 97.0 0.0008 1.7E-08 73.8 5.2 156 112-268 86-265 (285)
153 COG5175 MOT2 Transcriptional r 96.9 0.0027 5.8E-08 69.0 8.2 74 278-351 115-202 (480)
154 KOG0128 RNA-binding protein SA 96.9 0.00033 7.2E-09 83.8 1.5 177 192-382 571-764 (881)
155 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0057 1.2E-07 56.8 5.9 72 277-350 6-90 (100)
156 KOG2193 IGF-II mRNA-binding pr 96.4 0.0028 6.1E-08 70.6 4.3 100 279-381 3-107 (584)
157 KOG1855 Predicted RNA-binding 96.3 0.0047 1E-07 69.2 5.5 68 272-339 226-311 (484)
158 KOG0115 RNA-binding protein p5 96.3 0.0051 1.1E-07 65.0 5.1 86 241-337 6-95 (275)
159 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0072 1.6E-07 49.6 4.9 52 278-331 2-53 (53)
160 COG5175 MOT2 Transcriptional r 96.1 0.0083 1.8E-07 65.3 5.8 87 191-286 113-213 (480)
161 KOG1995 Conserved Zn-finger pr 96.0 0.0059 1.3E-07 67.4 4.0 78 276-353 65-155 (351)
162 PF14605 Nup35_RRM_2: Nup53/35 95.8 0.022 4.8E-07 46.7 5.7 52 193-246 2-53 (53)
163 PF08777 RRM_3: RNA binding mo 95.8 0.025 5.4E-07 53.0 6.7 59 193-252 2-60 (105)
164 KOG1295 Nonsense-mediated deca 95.7 0.0054 1.2E-07 68.4 2.3 74 692-766 5-80 (376)
165 KOG4307 RNA binding protein RB 95.5 0.026 5.6E-07 66.6 6.8 70 193-262 868-942 (944)
166 KOG3152 TBP-binding protein, a 95.5 0.0092 2E-07 63.1 2.9 68 191-258 73-157 (278)
167 KOG3152 TBP-binding protein, a 95.5 0.0069 1.5E-07 64.1 1.9 68 276-343 73-157 (278)
168 KOG2314 Translation initiation 95.5 0.029 6.2E-07 65.0 6.9 72 276-347 57-139 (698)
169 KOG1855 Predicted RNA-binding 95.4 0.015 3.3E-07 65.3 4.5 74 188-261 227-318 (484)
170 KOG1995 Conserved Zn-finger pr 95.1 0.021 4.6E-07 63.1 4.4 78 189-266 63-153 (351)
171 PF08952 DUF1866: Domain of un 95.0 0.066 1.4E-06 52.8 6.9 75 274-352 24-107 (146)
172 PF07576 BRAP2: BRCA1-associat 94.6 0.21 4.6E-06 47.3 9.0 86 692-780 10-96 (110)
173 KOG2202 U2 snRNP splicing fact 94.5 0.017 3.8E-07 61.2 1.7 62 292-353 83-149 (260)
174 KOG0804 Cytoplasmic Zn-finger 94.3 0.14 3E-06 58.3 8.3 81 694-778 74-154 (493)
175 PF05172 Nup35_RRM: Nup53/35/4 94.3 0.085 1.8E-06 49.1 5.6 72 191-264 5-89 (100)
176 KOG1996 mRNA splicing factor [ 93.9 0.098 2.1E-06 56.4 5.9 61 291-351 300-366 (378)
177 KOG2314 Translation initiation 93.8 0.12 2.5E-06 60.2 6.5 70 192-261 58-138 (698)
178 KOG2202 U2 snRNP splicing fact 93.3 0.039 8.4E-07 58.7 1.5 58 207-264 83-145 (260)
179 PF15023 DUF4523: Protein of u 92.8 0.39 8.4E-06 47.2 7.4 75 274-351 83-161 (166)
180 PF08675 RNA_bind: RNA binding 91.4 0.64 1.4E-05 41.8 6.5 53 279-335 11-63 (87)
181 KOG2591 c-Mpl binding protein, 90.7 0.67 1.5E-05 54.1 7.6 71 190-262 173-247 (684)
182 KOG1996 mRNA splicing factor [ 90.0 0.52 1.1E-05 51.1 5.6 58 207-264 301-364 (378)
183 KOG2135 Proteins containing th 90.0 0.38 8.3E-06 55.1 4.9 72 280-353 375-447 (526)
184 KOG4849 mRNA cleavage factor I 90.0 0.28 6.1E-06 54.0 3.6 71 191-261 79-156 (498)
185 PF10309 DUF2414: Protein of u 89.6 1.2 2.7E-05 37.8 6.5 54 277-334 5-62 (62)
186 KOG4285 Mitotic phosphoprotein 89.5 1.2 2.5E-05 48.7 7.7 72 277-351 197-269 (350)
187 PF15023 DUF4523: Protein of u 89.3 1.2 2.6E-05 43.8 7.0 76 187-265 81-160 (166)
188 PF04847 Calcipressin: Calcipr 89.2 0.64 1.4E-05 48.0 5.4 63 290-353 8-72 (184)
189 KOG2416 Acinus (induces apopto 89.0 0.27 5.9E-06 57.6 2.8 76 277-353 444-523 (718)
190 KOG2591 c-Mpl binding protein, 89.0 2.3 5E-05 49.8 10.1 69 276-346 174-246 (684)
191 KOG4849 mRNA cleavage factor I 88.2 0.39 8.5E-06 53.0 3.2 72 278-349 81-159 (498)
192 PF08952 DUF1866: Domain of un 87.6 1.1 2.4E-05 44.4 5.7 73 190-266 25-106 (146)
193 PF08675 RNA_bind: RNA binding 87.2 2.8 6E-05 37.9 7.3 55 193-251 10-64 (87)
194 KOG2416 Acinus (induces apopto 87.0 0.49 1.1E-05 55.6 3.3 68 186-254 438-506 (718)
195 KOG4676 Splicing factor, argin 86.5 0.71 1.5E-05 51.8 4.1 70 278-348 8-85 (479)
196 KOG2068 MOT2 transcription fac 86.2 0.35 7.7E-06 53.4 1.6 75 278-352 78-163 (327)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 82.7 1.2 2.7E-05 45.6 3.6 77 190-266 5-97 (176)
198 PF10309 DUF2414: Protein of u 80.3 7.8 0.00017 33.1 7.0 52 193-249 6-62 (62)
199 KOG2068 MOT2 transcription fac 79.1 1.2 2.6E-05 49.4 2.2 76 192-267 77-163 (327)
200 KOG0115 RNA-binding protein p5 78.7 2.2 4.9E-05 45.7 4.0 60 193-252 32-95 (275)
201 PF04847 Calcipressin: Calcipr 76.6 2.8 6.1E-05 43.3 3.9 61 205-266 8-70 (184)
202 KOG4285 Mitotic phosphoprotein 75.2 4 8.8E-05 44.7 4.8 62 193-257 198-259 (350)
203 PF14111 DUF4283: Domain of un 74.1 4.4 9.6E-05 39.6 4.5 104 204-311 29-139 (153)
204 KOG4574 RNA-binding protein (c 73.9 2.2 4.8E-05 52.2 2.6 73 279-352 300-374 (1007)
205 KOG2253 U1 snRNP complex, subu 73.3 2.9 6.4E-05 50.1 3.4 69 276-348 39-107 (668)
206 PF03880 DbpA: DbpA RNA bindin 69.5 15 0.00032 32.1 6.2 59 287-349 11-74 (74)
207 PF07576 BRAP2: BRCA1-associat 69.1 37 0.0008 32.3 9.2 66 191-256 12-81 (110)
208 PF07292 NID: Nmi/IFP 35 domai 66.5 4.8 0.0001 36.7 2.6 68 232-299 1-74 (88)
209 PF11767 SET_assoc: Histone ly 65.2 16 0.00035 31.5 5.4 55 288-346 11-65 (66)
210 KOG2135 Proteins containing th 64.8 3.5 7.7E-05 47.6 1.7 78 188-267 368-446 (526)
211 PF11767 SET_assoc: Histone ly 63.5 17 0.00038 31.3 5.3 56 202-261 10-65 (66)
212 KOG4574 RNA-binding protein (c 62.5 3.9 8.5E-05 50.2 1.6 73 194-267 300-374 (1007)
213 KOG4019 Calcineurin-mediated s 60.6 13 0.00027 38.3 4.6 74 279-353 12-91 (193)
214 KOG2253 U1 snRNP complex, subu 53.5 9.2 0.0002 46.1 2.6 69 190-262 38-106 (668)
215 PF03880 DbpA: DbpA RNA bindin 45.4 56 0.0012 28.4 5.7 59 202-264 11-74 (74)
216 KOG2318 Uncharacterized conser 38.3 93 0.002 37.4 7.5 78 186-263 168-304 (650)
217 KOG0804 Cytoplasmic Zn-finger 33.9 1.2E+02 0.0027 35.3 7.5 65 192-256 74-142 (493)
218 KOG4410 5-formyltetrahydrofola 28.2 1.4E+02 0.003 32.9 6.3 57 278-335 331-395 (396)
219 KOG4410 5-formyltetrahydrofola 27.9 1.5E+02 0.0032 32.7 6.5 47 192-239 330-377 (396)
220 KOG2318 Uncharacterized conser 25.0 2.1E+02 0.0047 34.5 7.6 72 277-348 174-304 (650)
221 COG5105 MIH1 Mitotic inducer, 24.2 1.8E+02 0.0038 32.8 6.3 97 705-809 243-344 (427)
222 PRK14548 50S ribosomal protein 24.2 1.2E+02 0.0027 27.5 4.3 56 279-334 22-81 (84)
223 PF10567 Nab6_mRNP_bdg: RNA-re 22.1 92 0.002 34.5 3.7 144 191-335 14-212 (309)
224 TIGR03636 L23_arch archaeal ri 21.9 1.5E+02 0.0033 26.4 4.4 56 279-334 15-74 (77)
225 KOG4483 Uncharacterized conser 21.0 1.9E+02 0.0041 33.4 5.9 55 277-332 391-445 (528)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-75 Score=646.60 Aligned_cols=517 Identities=52% Similarity=0.783 Sum_probs=389.1
Q ss_pred HHHHHhcCCCcEEEEecCccccccceEEeeecCccccCcccccccCCCCccccCCCCCCCCCCcEEEEeCCCCCCCHHHH
Q 003007 130 EDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSEL 209 (858)
Q Consensus 130 el~~lFs~~G~i~V~~d~~esa~~a~~~v~~~~~~~a~~~~~~~l~n~v~~~sg~~~~~~~~s~tLfV~NLP~~vteeeL 209 (858)
+++++|...|+++++.+....+.. +. ...+.+.....++|..+ +++ || .+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---~~--------------~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---RN--------------SDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---cc--------------cccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 457889999999776664433222 11 11244456667777777 566 77 788
Q ss_pred HHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeeCCCCCC
Q 003007 210 RALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 289 (858)
Q Consensus 210 r~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v 289 (858)
-.+|+.|++ ++. .+++.+++.++++|+|.|||.++
T Consensus 53 ~a~f~~~~~---------------------------------------p~~------~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPFNK---------------------------------------PLR------PDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred HhhhhccCC---------------------------------------CCC------cCCCCcccCccceEEEEecCCcC
Confidence 889988811 111 15667788899999999999999
Q ss_pred chhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccchhhhccchhhcHH
Q 003007 290 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQD 369 (858)
Q Consensus 290 TeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~~~~~ql~~~~~~~ 369 (858)
++++|+++|+.||+|+.|+.+...+|.+||+|+|+++|++|+++||+.++.|++|+ ++.+.++..+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999998 77777776555543
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCcccCCCCCCccccccccCCccCcc
Q 003007 370 ESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRG 449 (858)
Q Consensus 370 ~l~~~f~~~GsP~a~spP~~~~~~~~P~~~~~~~~~~~~~~~~~~sP~~~~~~~g~~s~~p~~~s~~~~~~~~~~~~~~~ 449 (858)
..+..++++|.++++|+.|.+ .+.++.++|..... ++...++ +-....+...+.-
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~~---------------~~~~g~l~P~~s~~-------~~~~~~~-~~~~~~~~~~~~~ 212 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWPR---------------GQLFGMLSPTRSSI-------LLEHISS-VDGSSPGRETPLL 212 (549)
T ss_pred --chhhhhccchhhcCCCCCCcC---------------Ccceeeeccchhhh-------hhhcchh-ccCccccccccch
Confidence 567889999999999999961 12233466654332 2222111 1111111222332
Q ss_pred ccchhhcccccccCCCccccCCCCCCCcCCccCCccCCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCCCCcccCCCCC
Q 003007 450 SLMEHALTNTISANGASFQQSNSFSEPKIGLYRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMG 529 (858)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~w~~~~~~ 529 (858)
.| |.|.+ ....-+|+++++.. |..+++..++.+++++--+|
T Consensus 213 ~h--q~~~~------~~~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~--------------------- 253 (549)
T KOG4660|consen 213 NH--QRFVE------FADNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVW--------------------- 253 (549)
T ss_pred hh--hhhhh------hccccchhhcccCC----------ceecCCCCceEEecCCCccc---------------------
Confidence 33 33332 11224567777632 66667777888888874444
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCccccCcCCCCCCCCcccccCCCCCCCCCcCCCCccccCCCCCCCCCccccccCCCC
Q 003007 530 HPFSSNGKIHGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRA 609 (858)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 609 (858)
+++... .........+++||||+||+ ..+....+++++++..+++.++.+.
T Consensus 254 n~~~~~---------r~~~~~~~~~~~~hi~~~Ps------------------~~~l~~~~~~~f~~~s~~~~~~~~~-- 304 (549)
T KOG4660|consen 254 NPFPSR---------RQRQNSSSSHYEHHIGSAPS------------------MHHLLSRISVGFNGGSGALEMNSNG-- 304 (549)
T ss_pred CCcccc---------ccccccCcccccCccCCCcc------------------cccccccCccccCCCCCCccccccc--
Confidence 112111 11122344567999999996 1222334566777776766554332
Q ss_pred CCCCC-ccCCCCCCCCCCc-ccccCCCCCCCcccCCCCCCCCCCCccccccc---cccccccccCCCCccccccccccch
Q 003007 610 SVNPG-ITVPRNLSDNGSS-FRVMSSPRLSPVFLGNGPYPGLTPANIEGLYE---RGRSRRIENNNGNQLDSKKQFQLEL 684 (858)
Q Consensus 610 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~r~rr~~~~~~~~~~~~~~~~~~~ 684 (858)
..|-| .+..+++++..+. +++.+.++..+.|-+++.+. ...+...+ ..+.||.+. ...+ ...+++.+|+
T Consensus 305 ~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~----~~~~~~~~~~~~~~~~Rtt~-~i~n-i~n~~~~~dl 378 (549)
T KOG4660|consen 305 QANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT----SQNDYPVELILNYRDRRTTV-MIKN-IPNKYGQLDL 378 (549)
T ss_pred cCCCCccccCcccccccCCCccccccCCCCcccccccccc----cccccccccccccccchhhh-hhhc-cccchhHHHH
Confidence 23334 4588999999887 99999999999999888552 33444444 777788886 3333 3489999999
Q ss_pred hhHhcCCCcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCccc
Q 003007 685 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWE 764 (858)
Q Consensus 685 ~~i~~g~d~rTTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~g~~w~ 764 (858)
.+|.+|+|.|||+||||||||||++||++. ||..+|+||||||||||+|+||||||||||++|+++++||++|||++|+
T Consensus 379 ~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 379 LRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred HHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeeecccHHHHHHHhccCcCCCCCCCccceEEcCCCCCCCCccccccCCCCCccccccCCCC
Q 003007 765 KFNSEKVASLAYARIQGRAALVAHFQNSSLMNEDKRCRPILFHSEGPEAGDQVTQEQLNSNSVNFQVCPSNG 836 (858)
Q Consensus 765 ~~~s~k~~~v~~A~iQG~~~l~~~~~~s~~~~~~~~~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 836 (858)
+|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ +..|. +|++|... +++.+....
T Consensus 458 ~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~---~~~~p~~~-~~~a~~~~s 523 (549)
T KOG4660|consen 458 KFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR---EEPEPVKL-NQDAGAGHS 523 (549)
T ss_pred hhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccccc---ccCccccc-cccCCCCcc
Confidence 99999999999999999999999999999999999999999998 67777 99999887 877665443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=7.3e-46 Score=336.56 Aligned_cols=97 Identities=67% Similarity=1.202 Sum_probs=96.3
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003007 694 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 773 (858)
Q Consensus 694 rTTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 773 (858)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||++++++.+|++.|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccHHHHHHHhc
Q 003007 774 LAYARIQGRAALVAHFQ 790 (858)
Q Consensus 774 v~~A~iQG~~~l~~~~~ 790 (858)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.8e-30 Score=288.53 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=196.3
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----cccccccCCCCccccCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~sg~~~ 186 (858)
-++++|++||.+++|.++.++|+.+|.| .|..+..+...++++++.|.+.+.+. .+++..+.+....+....+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 3689999999999999999999999987 66777777888999999999876664 3444455444333332222
Q ss_pred CC-CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccc--cc
Q 003007 187 YG-EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 258 (858)
Q Consensus 187 ~~-~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g--r~ 258 (858)
.. ....++|||+|||.++++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|++.|+|..+.+ .+
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 22 234678999999999999999999999999988774 45689999999999999999999999998876 56
Q ss_pred ccccccCCCCCCCC----------------C-------------------------------------------------
Q 003007 259 LDIHFSIPKDNPSD----------------K------------------------------------------------- 273 (858)
Q Consensus 259 L~V~~a~pk~~~~~----------------~------------------------------------------------- 273 (858)
|.|.|+........ .
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQ 242 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccc
Confidence 77877643320000 0
Q ss_pred -----------------------CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHH
Q 003007 274 -----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVR 325 (858)
Q Consensus 274 -----------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e 325 (858)
.....+|||+|||.++++++|+++|++||.|++|++ ++.++|||||+|.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~ 322 (352)
T TIGR01661 243 RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYD 322 (352)
T ss_pred cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHH
Confidence 000125999999999999999999999999999987 5678999999999999
Q ss_pred HHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 326 AAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 326 ~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
+|.+||..|||..|+|++|+|.|...+..
T Consensus 323 ~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 323 EAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999887653
No 4
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=4.2e-31 Score=269.66 Aligned_cols=214 Identities=25% Similarity=0.416 Sum_probs=181.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.....++|+|..||..+|+||||.||...|+|++|+ +++.+.||+||.|.++++|++|+..|+|.++..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 345678999999999999999999999999999998 589999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003007 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (858)
Q Consensus 263 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (858)
|++|.. +.+.+.+|||++||+++|+.||+++|++||.|+..|| ++.+||.|||+|+.+.+|++||+.|||.
T Consensus 117 yARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 117 YARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred eccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 998754 5677889999999999999999999999999988765 6789999999999999999999999999
Q ss_pred ccCC--ceEEEEecCCCcccchhhhccchhhcHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCcccccc------CCC
Q 003007 338 DIAG--KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTIS------KSP 409 (858)
Q Consensus 338 ~i~G--r~I~V~~s~~~~~r~~~~~ql~~~~~~~~l~~~f~~~GsP~a~spP~~~~~~~~P~~~~~~~~~~------~~~ 409 (858)
...| .+|.|+|+.....+..... +. .-|++|. +++++|++| +.|++. ...
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~----------ls---~ly~sp~--------rr~~Gp~hh-~~~r~r~~~~~~~~~ 250 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQAL----------LS---QLYQSPA--------RRYGGPMHH-QAQRFRLDNLLNPHA 250 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhh----------hH---HhhcCcc--------ccCCCcccc-hhhhhccccccchhh
Confidence 9887 6899999988755432111 00 1233332 568899998 666652 233
Q ss_pred CCCCCCCCCCCCCCCCcc
Q 003007 410 NFRNMSPTTSNHMPGLAS 427 (858)
Q Consensus 410 ~~~~~sP~~~~~~~g~~s 427 (858)
...+|||++.+++.++++
T Consensus 251 ~~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 251 AQARFSPMTIDGMSGLAG 268 (360)
T ss_pred hhccCCCccccccceeee
Confidence 456999999999988865
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.4e-29 Score=272.11 Aligned_cols=244 Identities=20% Similarity=0.327 Sum_probs=207.0
Q ss_pred hHHHhhcCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----cccccccCCCC
Q 003007 106 EDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGA 178 (858)
Q Consensus 106 ~d~l~~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v 178 (858)
++..-...-+|+||++||.++.|.+|+.+|+..|.| +|++|+..+.+++++|+.|+....|+ .++.+.+..+.
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 345555678999999999999999999999999987 99999999999999999999887776 34555555441
Q ss_pred ccccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhcC
Q 003007 179 GTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQN 251 (858)
Q Consensus 179 ~~~sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~-I~sv~~------~~ksrG~aFV~F~d~e~A~~Al~~Lng 251 (858)
. .+ ......++.|||+|||...+++||.+.|++.++ |..|.+ ..++||||||+|+++..|..|-++|-.
T Consensus 155 ~--ig--vc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 155 L--LG--VCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred E--eE--EEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 1 00 112346799999999999999999999999885 444432 568999999999999999999998855
Q ss_pred --CccccccccccccCCCCCCCCCCC-CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHH
Q 003007 252 --KPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAE 328 (858)
Q Consensus 252 --~~l~gr~L~V~~a~pk~~~~~~~~-~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~ 328 (858)
.++.|..+.|.||.|+..+.++.+ .-+.|||+||+.++|+|.|+++|+.||.|..|+.. +.||||.|.++++|.
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~dav 307 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAV 307 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHH
Confidence 446799999999999887765533 33679999999999999999999999999999765 679999999999999
Q ss_pred HHHHHhCCCccCCceEEEEecCCCcccc
Q 003007 329 AALKSLNRSDIAGKRIKLEPSRPGGARR 356 (858)
Q Consensus 329 kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (858)
+|++.|||++|+|..|+|.+++|...++
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999987654
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.2e-29 Score=299.70 Aligned_cols=293 Identities=18% Similarity=0.268 Sum_probs=227.0
Q ss_pred CCCCcccccceeccCCcccccccCCCccccccCCcccccccccccCCCCCCcccccccCccccCCCCCCCCCccCccCCC
Q 003007 18 NIPKEVGGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPA 97 (858)
Q Consensus 18 ~~~~~~~~~t~~~p~~a~~~~~~~d~~~fs~~l~~l~~~k~~~~~~~~~~~~~d~~~~~~k~~~~eee~~k~~ee~e~~~ 97 (858)
...++.++.+|.-+++|.+|+..+++..+.|+-+.|.-.+. + +.. .
T Consensus 39 ~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~-------------~--~~~-----------~-------- 84 (562)
T TIGR01628 39 RRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR-------------D--PSL-----------R-------- 84 (562)
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc-------------c--ccc-----------c--------
Confidence 34556889999999999999999998877777655533110 0 000 0
Q ss_pred CCCCCCCChHHHhhcCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----cc
Q 003007 98 IGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LL 170 (858)
Q Consensus 98 I~nlLP~d~d~l~~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~ 170 (858)
... ...++|++|+.++++.+++++|+.+|.| .|..+ ..+..++++++.|.+.+.+.. ++
T Consensus 85 -----~~~--------~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~ln 150 (562)
T TIGR01628 85 -----RSG--------VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVN 150 (562)
T ss_pred -----ccC--------CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhc
Confidence 001 2468999999999999999999999987 33333 355678999999988776642 22
Q ss_pred ccccCCCCccccCCC------CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHH
Q 003007 171 HYSVPNGAGTVAGEH------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIR 240 (858)
Q Consensus 171 ~~~l~n~v~~~sg~~------~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e 240 (858)
+..+.+....+.... .......++|||+|||.++|+++|+++|++||+|.++++ .++++|||||+|.+.+
T Consensus 151 g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e 230 (562)
T TIGR01628 151 GMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHE 230 (562)
T ss_pred ccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 222222211111100 112234578999999999999999999999999999874 4678899999999999
Q ss_pred HHHHHHHHhcCCccc----cccccccccCCCCCCCC--------------CCCCccceeeeCCCCCCchhHHHHhhcccC
Q 003007 241 AARTAMRALQNKPLR----RRKLDIHFSIPKDNPSD--------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 302 (858)
Q Consensus 241 ~A~~Al~~Lng~~l~----gr~L~V~~a~pk~~~~~--------------~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG 302 (858)
+|.+|++.|++..+. ++.|.|.++..+..... ......+|||+||+.++|+++|+++|++||
T Consensus 231 ~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G 310 (562)
T TIGR01628 231 DAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECG 310 (562)
T ss_pred HHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcC
Confidence 999999999999999 99999998866543310 122345799999999999999999999999
Q ss_pred ceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccchh
Q 003007 303 EVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNL 358 (858)
Q Consensus 303 ~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~~~ 358 (858)
.|++|++ ++.++|||||+|.+.++|.+|++.|||+.+.|++|.|.++.++..++..
T Consensus 311 ~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~ 370 (562)
T TIGR01628 311 EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAH 370 (562)
T ss_pred CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHH
Confidence 9999987 4677999999999999999999999999999999999999988766543
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.9e-29 Score=298.10 Aligned_cols=266 Identities=19% Similarity=0.320 Sum_probs=217.8
Q ss_pred eeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcc----cccccCCCCccccC---CC
Q 003007 116 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPNGAGTVAG---EH 185 (858)
Q Consensus 116 el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~----~~~~l~n~v~~~sg---~~ 185 (858)
.++|++|+.+++|.+++++|+.+|.| .|..|..+...++++++.|.+...+... +...+.+...++.. ..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 48999999999999999999999986 6666777778889999999988766532 22222222222211 11
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
.......++|||+|||.++++++|+++|++||+|.+|++ .++++|||||+|.+.++|++|++.|+|..+.++.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 112233578999999999999999999999999999875 4678999999999999999999999999999999999
Q ss_pred cccCCCCCCC-CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003007 262 HFSIPKDNPS-DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (858)
Q Consensus 262 ~~a~pk~~~~-~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG 336 (858)
....++.... ......++|||+||+.++|+++|+++|++||.|.++++ .++++|||||+|++.++|.+|++.|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 8776654432 22334568999999999999999999999999999976 345788999999999999999999999
Q ss_pred CccC----CceEEEEecCCCccc----------------------chhhhccchhhcHHHHHHHHhhcCCC
Q 003007 337 SDIA----GKRIKLEPSRPGGAR----------------------RNLMLQLNQELEQDESRILQHQVGSP 381 (858)
Q Consensus 337 ~~i~----Gr~I~V~~s~~~~~r----------------------~~~~~ql~~~~~~~~l~~~f~~~GsP 381 (858)
..+. |+.|.|.++..+..+ ..++.++...+++++++.+|.+||.-
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i 312 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEI 312 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCe
Confidence 9999 999999888665443 24678888899999999999999843
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3.2e-27 Score=262.61 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=143.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
+.++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|+..|+|..|.|++|+|+|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999875 56789999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
+... .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|++.++|++|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 7543 234568999999999999999999999999998876 3457899999999999999999999999988
Q ss_pred C--ceEEEEecCCCc
Q 003007 341 G--KRIKLEPSRPGG 353 (858)
Q Consensus 341 G--r~I~V~~s~~~~ 353 (858)
| .+|.|+++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 578888876654
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=3.1e-28 Score=282.56 Aligned_cols=262 Identities=18% Similarity=0.236 Sum_probs=197.5
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE-EEEecCccccccceEEeeecCccccCcccc------cccCCCCccccCC---
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGNGLLH------YSVPNGAGTVAGE--- 184 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i-~V~~d~~esa~~a~~~v~~~~~~~a~~~~~------~~l~n~v~~~sg~--- 184 (858)
..++|++||.+++|.+++++|+.+|.| .+.+- ..++++++.|.+.+.|..... ..+.+....+...
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~----~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMML----PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE----CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 568999999999999999999999998 22111 134567777776655543221 1222221111110
Q ss_pred ---CC-------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCC-cccEEEEEEcCHHHHHHHHHHhcCCc
Q 003007 185 ---HP-------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNKP 253 (858)
Q Consensus 185 ---~~-------~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~k-srG~aFV~F~d~e~A~~Al~~Lng~~ 253 (858)
.. .......+|||+||+..+|+++|+++|+.||+|.+|++..+ .+|+|||+|.+.++|++|++.|+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 00 01112247999999999999999999999999999986433 34799999999999999999999999
Q ss_pred ccc--ccccccccCCCCCC-------C----------C------------------------------------------
Q 003007 254 LRR--RKLDIHFSIPKDNP-------S----------D------------------------------------------ 272 (858)
Q Consensus 254 l~g--r~L~V~~a~pk~~~-------~----------~------------------------------------------ 272 (858)
|.+ +.|+|.|+.+.... . +
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGG 238 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccc
Confidence 965 47888776542100 0 0
Q ss_pred --------------------------------CCCCccceeeeCCCC-CCchhHHHHhhcccCceEEEEeCCCCccEEEE
Q 003007 273 --------------------------------KDLNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFI 319 (858)
Q Consensus 273 --------------------------------~~~~~~tLfV~NLp~-~vTeedL~~~Fs~fG~I~~irit~~srG~aFV 319 (858)
......+|||+||+. .+|+++|+++|+.||.|.+|++...++|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV 318 (481)
T TIGR01649 239 DRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALI 318 (481)
T ss_pred ccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEE
Confidence 001235899999997 69999999999999999999997777899999
Q ss_pred EEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc-----------------------------------------ccchh
Q 003007 320 EFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG-----------------------------------------ARRNL 358 (858)
Q Consensus 320 eF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~-----------------------------------------~r~~~ 358 (858)
+|.+.++|.+||+.|||..|.|++|+|++++... .+..+
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~ 398 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLH 398 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEE
Confidence 9999999999999999999999999999875421 01235
Q ss_pred hhccchhhcHHHHHHHHhhcCC
Q 003007 359 MLQLNQELEQDESRILQHQVGS 380 (858)
Q Consensus 359 ~~ql~~~~~~~~l~~~f~~~Gs 380 (858)
+.++...+++++++.+|..+|.
T Consensus 399 v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 399 LSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred EecCCCCCCHHHHHHHHHhcCC
Confidence 6677778899999999999884
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=3.5e-28 Score=282.87 Aligned_cols=236 Identities=21% Similarity=0.320 Sum_probs=192.6
Q ss_pred hcCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccC
Q 003007 111 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAG 183 (858)
Q Consensus 111 ~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg 183 (858)
+...+++||++||.+++|.+++++|+.+|.| .|.+| .+..+++++++.|.+.+.+.. ++.+.+.++... .
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l--~ 131 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL--G 131 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc--c
Confidence 3456899999999999999999999999976 67777 778899999999998776653 334444322110 0
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhcC--Ccc
Q 003007 184 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYT------ACKHRGFVMISYYDIRAARTAMRALQN--KPL 254 (858)
Q Consensus 184 ~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~-I~sv~~------~~ksrG~aFV~F~d~e~A~~Al~~Lng--~~l 254 (858)
.......++|||+|||.++++++|+++|+++++ +..+.+ ..+++|||||+|.++++|.+|++.|.. ..+
T Consensus 132 --V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 132 --VCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred --ccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 011234689999999999999999999999864 333322 356899999999999999999998865 357
Q ss_pred ccccccccccCCCCCCCCCC-CCccceeeeCCCCCCchhHHHHhhccc--CceEEEEeCCCCccEEEEEEcCHHHHHHHH
Q 003007 255 RRRKLDIHFSIPKDNPSDKD-LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAAL 331 (858)
Q Consensus 255 ~gr~L~V~~a~pk~~~~~~~-~~~~tLfV~NLp~~vTeedL~~~Fs~f--G~I~~irit~~srG~aFVeF~d~e~A~kAl 331 (858)
.++.|.|.|+.++.....+. ...++|||+||+.++|+++|+++|++| |+|++|++. ++||||+|++.++|++|+
T Consensus 210 ~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHH
Confidence 89999999998876443322 234689999999999999999999999 999999874 679999999999999999
Q ss_pred HHhCCCccCCceEEEEecCCCcc
Q 003007 332 KSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 332 ~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
+.|||.+|.|+.|+|+|+++...
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999988653
No 11
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.95 E-value=8e-29 Score=282.07 Aligned_cols=326 Identities=18% Similarity=0.193 Sum_probs=253.0
Q ss_pred CcccccceeccCCcccccccCCCccccccCCcccccccccccCCCCCCcccccccCccccCCCCCCCCCccCccCCCCCC
Q 003007 21 KEVGGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGN 100 (858)
Q Consensus 21 ~~~~~~t~~~p~~a~~~~~~~d~~~fs~~l~~l~~~k~~~~~~~~~~~~~d~~~~~~k~~~~eee~~k~~ee~e~~~I~n 100 (858)
+.+++.+|++|++|+++|.++|+.+|+|||+||+|.+.+.+.. ...+.....||+ +++.+.+.....-..||
T Consensus 246 ~lfa~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k~~~~----~~~~~~~~~~k~----~ke~~rk~~~~~~~~wn 317 (725)
T KOG0110|consen 246 KLFAFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEKSTAK----EDASELGSDYKK----EKELKRKAASASFHSWN 317 (725)
T ss_pred HhhHHHhhhhhHHHHhhhhhccccccccceeeecCcchhhhhh----hhHhhcCCcHHH----HHHhccccchhcceecc
Confidence 3448899999999999999999999999999999988654333 122222344766 77777777778888999
Q ss_pred CCCCChHHHhhcCcceeeeccCCCCCChHHHHHHhcCCCcEEEEecCccccccceEEeeecCccccCcccccccCCCCcc
Q 003007 101 SLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGT 180 (858)
Q Consensus 101 lLP~d~d~l~~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i~V~~d~~esa~~a~~~v~~~~~~~a~~~~~~~l~n~v~~ 180 (858)
.|..+.++++..++.++.|... .+. +.+.... .+++.+.+......+..+...+++..
T Consensus 318 ~l~~~~~ava~~~a~k~~v~k~-----~i~----------------d~~~~gs-avr~al~etr~~~e~~~~~ee~gV~l 375 (725)
T KOG0110|consen 318 TLFMGANAVAGILAQKLGVEKS-----RIL----------------DGSLSGS-AVRLALGETRVVQEVRRFFEENGVKL 375 (725)
T ss_pred cccccccHHHHHHHHHhCCeee-----eee----------------chhhcch-HHHHHHHHhhhchhhhhhHHhhCccc
Confidence 9999999999999888888761 011 1111111 23444445555556666667777655
Q ss_pred ccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 181 VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 181 ~sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
..... .++..+.|+|+|||..+..++|..+|..||+|.++. .+...--++|.|.++.+|++|++.|++..+...+++
T Consensus 376 ~~F~~--~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvl-lp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~ply 452 (725)
T KOG0110|consen 376 DAFSQ--AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVL-LPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLY 452 (725)
T ss_pred ccchh--hhhhcceeeeccCccccccHHHHHHhhcccccceee-cCcccceeeeeecCccchHHHHHHhchhhhccCccc
Confidence 55544 677889999999999999999999999999999984 444444599999999999999999999999999999
Q ss_pred ccccCCCCCC--------------------CC------------CC-------------CCc-cceeeeCCCCCCchhHH
Q 003007 261 IHFSIPKDNP--------------------SD------------KD-------------LNQ-GTLVVFNLDPSVSNEDL 294 (858)
Q Consensus 261 V~~a~pk~~~--------------------~~------------~~-------------~~~-~tLfV~NLp~~vTeedL 294 (858)
+.|+....-. .+ .+ ... ++|||+||++++|.++|
T Consensus 453 le~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l 532 (725)
T KOG0110|consen 453 LEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDL 532 (725)
T ss_pred cccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHH
Confidence 9886311000 00 00 011 24999999999999999
Q ss_pred HHhhcccCceEEEEeCCC--------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC--------CCcc----
Q 003007 295 RQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR--------PGGA---- 354 (858)
Q Consensus 295 ~~~Fs~fG~I~~irit~~--------srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~--------~~~~---- 354 (858)
..+|.++|.|+++.|..+ ++|||||+|++.++|++|++.|+|+.|+|+.|.|+++. ++..
T Consensus 533 ~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~ 612 (725)
T KOG0110|consen 533 EDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKK 612 (725)
T ss_pred HHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccc
Confidence 999999999999977432 45999999999999999999999999999999999998 2111
Q ss_pred -cchhhhccchhhcHHHHHHHHhhcC
Q 003007 355 -RRNLMLQLNQELEQDESRILQHQVG 379 (858)
Q Consensus 355 -r~~~~~ql~~~~~~~~l~~~f~~~G 379 (858)
.+.+++++..+.+..+++.+|..||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhccc
Confidence 1457889999999999999999997
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.95 E-value=7.8e-27 Score=259.08 Aligned_cols=163 Identities=23% Similarity=0.419 Sum_probs=145.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.....++|||+|||+++|+++|+++|+.||+|++|++ +++++|||||+|.++++|++|++.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3456799999999999999999999999999999874 56789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003007 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (858)
Q Consensus 263 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (858)
|+.+... .....+|||.|||.++|+++|+++|++||.|+.|++ ++++++||||+|.++++|++||+.||+.
T Consensus 183 ~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 183 YARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9876432 234568999999999999999999999999999876 4566899999999999999999999999
Q ss_pred ccCC--ceEEEEecCCCcc
Q 003007 338 DIAG--KRIKLEPSRPGGA 354 (858)
Q Consensus 338 ~i~G--r~I~V~~s~~~~~ 354 (858)
.+.| +.|+|++++....
T Consensus 259 ~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccCCCceeEEEEECCcccc
Confidence 8876 6899999876543
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.5e-26 Score=238.29 Aligned_cols=214 Identities=18% Similarity=0.351 Sum_probs=176.9
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcccccccCCCCccccCCCCC-CC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPY-GE 189 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~~~~~l~n~v~~~sg~~~~-~~ 189 (858)
-+.|+|++|.++++|+-+..||.+.|.+ .|.||.. ++. .+.. .+.+.. ..
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~v~-----wa~~-------------p~nQsk~t~ 59 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------KVN-----WATA-------------PGNQSKPTS 59 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------ccc-----cccC-------------cccCCCCcc
Confidence 4679999999999999999999999987 4444410 000 0000 011111 11
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...-.+||+.|...++-++||+.|.+||+|..+++ +.|++||+||.|.+.++|++||..|+|+.|.+|.|+-.||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 12357999999999999999999999999988874 8899999999999999999999999999999999999999
Q ss_pred CCCCCCCC------------CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHH
Q 003007 265 IPKDNPSD------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALK 332 (858)
Q Consensus 265 ~pk~~~~~------------~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~ 332 (858)
..|..... ....++++||+|++.-+||++|++.|++||.|.+||+.+. +||+||+|++.|+|.+||.
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEEecchhhHHHHHH
Confidence 77652211 1234579999999999999999999999999999999864 6899999999999999999
Q ss_pred HhCCCccCCceEEEEecCCCcc
Q 003007 333 SLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
+||+++|.|+.+++.|.+....
T Consensus 219 ~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HhcCceeCceEEEEeccccCCC
Confidence 9999999999999999987654
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.6e-27 Score=240.93 Aligned_cols=246 Identities=19% Similarity=0.308 Sum_probs=203.3
Q ss_pred ccCccCCCCCCCCCCChHHHhhcCcceeeeccCCCCCChHHHHHHhcCCCcEEEEecCccccccceEEeeecCccccC--
Q 003007 90 LEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN-- 167 (858)
Q Consensus 90 ~ee~e~~~I~nlLP~d~d~l~~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i~V~~d~~esa~~a~~~v~~~~~~~a~-- 167 (858)
.++....+|+|.||.. |++..++.||.+++|+|.|++.+ |..++.+.++.++++.+...+.
T Consensus 37 t~~skTNLIvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvR---------DKitGqSLGYGFVNYv~p~DAe~A 99 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQN--------MTQDELRSLFGSIGEIESCKLVR---------DKITGQSLGYGFVNYVRPKDAEKA 99 (360)
T ss_pred cCcccceeeeeecccc--------cCHHHHHHHhhcccceeeeeeee---------ccccccccccceeeecChHHHHHH
Confidence 3456778999999988 88888888888888888877655 4567777888888888776553
Q ss_pred --cccccccCCCCccccCCCCCCCC-CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCH
Q 003007 168 --GLLHYSVPNGAGTVAGEHPYGEH-PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDI 239 (858)
Q Consensus 168 --~~~~~~l~n~v~~~sg~~~~~~~-~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~ 239 (858)
.+++..+.++.++++...|..+. ...+|||.+||..+|..||..+|++||.|..-+ +++.+||.+||.|...
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 56777888888888888776543 457999999999999999999999999986544 4789999999999999
Q ss_pred HHHHHHHHHhcCCcccc--ccccccccCCCCCCCC------------------------C--------------------
Q 003007 240 RAARTAMRALQNKPLRR--RKLDIHFSIPKDNPSD------------------------K-------------------- 273 (858)
Q Consensus 240 e~A~~Al~~Lng~~l~g--r~L~V~~a~pk~~~~~------------------------~-------------------- 273 (858)
++|++||+.|+|..-.| .+|.|+|+........ +
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~ 259 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMT 259 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcc
Confidence 99999999999988765 4788888743211000 0
Q ss_pred ---------------CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHH
Q 003007 274 ---------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (858)
Q Consensus 274 ---------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~ 333 (858)
.....+|||.||.++.+|.-|+++|++||.|..|++ +.+.+|||||.+.+.++|..||..
T Consensus 260 ~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~s 339 (360)
T KOG0145|consen 260 IDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 339 (360)
T ss_pred ccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHH
Confidence 001147999999999999999999999999999986 467899999999999999999999
Q ss_pred hCCCccCCceEEEEecCCC
Q 003007 334 LNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~ 352 (858)
|||..+.+|.|.|.|...+
T Consensus 340 LNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 340 LNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred hcCccccceEEEEEEecCC
Confidence 9999999999999997554
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.1e-25 Score=261.28 Aligned_cols=163 Identities=25% Similarity=0.330 Sum_probs=140.9
Q ss_pred CCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 190 HPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 190 ~~s~tLfV~NLP~-~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
.++++|||+|||. .+++++|+++|+.||+|.+|++....+|||||+|.+.++|++|++.|+|..|.|++|+|.++..+.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 3568999999998 699999999999999999999766678999999999999999999999999999999999875431
Q ss_pred CCCC------------C---------------------CCCccceeeeCCCCCCchhHHHHhhcccCc--eEEEEeCCC-
Q 003007 269 NPSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRETPH- 312 (858)
Q Consensus 269 ~~~~------------~---------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~--I~~irit~~- 312 (858)
.... + ..+..+|||+|||.++|+++|+++|+.||. |+.|++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~ 432 (481)
T TIGR01649 353 VQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD 432 (481)
T ss_pred ccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC
Confidence 1000 0 012358999999999999999999999998 888887543
Q ss_pred --CccEEEEEEcCHHHHHHHHHHhCCCccCCce------EEEEecCCC
Q 003007 313 --KRHHKFIEFYDVRAAEAALKSLNRSDIAGKR------IKLEPSRPG 352 (858)
Q Consensus 313 --srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~------I~V~~s~~~ 352 (858)
++++|||+|.+.++|.+||..|||+.|.|+. |+|.|+++.
T Consensus 433 ~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 433 NERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999998764
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=3.4e-24 Score=246.94 Aligned_cols=238 Identities=21% Similarity=0.275 Sum_probs=186.2
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcc---cccccCCCCcccc-----
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTVA----- 182 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~---~~~~l~n~v~~~s----- 182 (858)
...++|++||..+++.++.++|+.+|.| .|..+..+...++++++.|.+...+... .+..+.+....+.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 4679999999999999999999999987 6666777778899999999987665422 2222221111100
Q ss_pred --------CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 003007 183 --------GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249 (858)
Q Consensus 183 --------g~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~L 249 (858)
..........++|||+|||..+++++|+++|++||.|..|.+ +++++|||||+|.+.++|.+|+..|
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 000011123689999999999999999999999999999874 3578999999999999999999999
Q ss_pred cCCccccccccccccCCCCCCC----------------------------------C-----------------------
Q 003007 250 QNKPLRRRKLDIHFSIPKDNPS----------------------------------D----------------------- 272 (858)
Q Consensus 250 ng~~l~gr~L~V~~a~pk~~~~----------------------------------~----------------------- 272 (858)
+|..|.|++|.|.|+....... .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953210000 0
Q ss_pred -----------------------------CCCCccceeeeCCCCCCc----------hhHHHHhhcccCceEEEEeC-CC
Q 003007 273 -----------------------------KDLNQGTLVVFNLDPSVS----------NEDLRQIFGAYGEVKEIRET-PH 312 (858)
Q Consensus 273 -----------------------------~~~~~~tLfV~NLp~~vT----------eedL~~~Fs~fG~I~~irit-~~ 312 (858)
......+|+|.||....+ .+||++.|++||.|++|.+. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~ 408 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN 408 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 001234688888854433 36899999999999999885 77
Q ss_pred CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 313 srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
..|++||+|.++++|.+|++.|||..++|+.|.+.+...
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 889999999999999999999999999999999998754
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.2e-24 Score=248.51 Aligned_cols=162 Identities=20% Similarity=0.336 Sum_probs=135.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...++|||+|||..+++++|+++|+.||.|..+.+ +++++|||||+|.+.++|+.|+..|+|..|.|++|.|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34589999999999999999999999999998764 5778999999999999999999999999999999999997
Q ss_pred CCCCCCCC------------------------CCCCccceeeeCCCCC--C--------chhHHHHhhcccCceEEEEeC
Q 003007 265 IPKDNPSD------------------------KDLNQGTLVVFNLDPS--V--------SNEDLRQIFGAYGEVKEIRET 310 (858)
Q Consensus 265 ~pk~~~~~------------------------~~~~~~tLfV~NLp~~--v--------TeedL~~~Fs~fG~I~~irit 310 (858)
........ ......+|+|.||... + ..++|+++|++||.|+.|+|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 54321110 0113457899998532 1 236899999999999999874
Q ss_pred C--------CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 311 P--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 311 ~--------~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
. ...|++||+|.++++|++|+.+|||..|.|+.|.|.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 2 2368999999999999999999999999999999999754
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=1.8e-24 Score=252.27 Aligned_cols=163 Identities=20% Similarity=0.402 Sum_probs=143.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4589999999999999999999999999999984 67899999999999999999999999999999999998754
Q ss_pred CCCCCC-------CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHH
Q 003007 266 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (858)
Q Consensus 266 pk~~~~-------~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~ 333 (858)
...... .......+|||+||++++++++|+++|+.||.|++|++ ++.++|||||+|.+.++|.+||+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 321110 11123468999999999999999999999999999987 345799999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 003007 334 LNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~~ 353 (858)
|||..++|+.|+|.++.++.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999887653
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.90 E-value=9e-23 Score=235.14 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=143.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.+...++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+. |+|..+.|++|.|+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999885 56789999999999999999997 89999999999998
Q ss_pred ccCCCCCCCC--------CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHH
Q 003007 263 FSIPKDNPSD--------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 329 (858)
Q Consensus 263 ~a~pk~~~~~--------~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~k 329 (858)
++........ ......+|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322111 11224789999999999999999999999999999763 4678999999999999999
Q ss_pred HHHHhCCCccCCceEEEEecCC
Q 003007 330 ALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 330 Al~~LnG~~i~Gr~I~V~~s~~ 351 (858)
|++.|||..|.|+.|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=2.4e-23 Score=225.79 Aligned_cols=164 Identities=23% Similarity=0.440 Sum_probs=143.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCc-cc--cccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LR--RRKLDI 261 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~-l~--gr~L~V 261 (858)
.+.-+|||+-||..++|+|||++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.+ |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3457899999999999999999999999999886 378899999999999999999999998865 44 468899
Q ss_pred cccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003007 262 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (858)
Q Consensus 262 ~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (858)
+|+....+.. ..+.+|||+-|++.+||.|++++|++||.|++|+| .+.+||||||+|.+.+.|..||++|||.
T Consensus 112 k~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 112 KYADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred cccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 9986544322 34678999999999999999999999999999987 4578999999999999999999999997
Q ss_pred -ccCC--ceEEEEecCCCcccc
Q 003007 338 -DIAG--KRIKLEPSRPGGARR 356 (858)
Q Consensus 338 -~i~G--r~I~V~~s~~~~~r~ 356 (858)
.+.| .+|.|+|+++++.|.
T Consensus 189 ~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 189 QTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeeccCCCceEEEecccCCCch
Confidence 5666 689999999987663
No 21
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.89 E-value=1.2e-22 Score=236.68 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=154.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc-cccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~ 265 (858)
..++|||+|||.+++|++|+++|++||.|..|++ +++++|||||+|.+.++|++||+.|++..+. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4589999999999999999999999999999874 5789999999999999999999999999986 7888887653
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCc-eEEEEe------CCCCccEEEEEEcCHHHHHHHHHHhCC--
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR-- 336 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~-I~~iri------t~~srG~aFVeF~d~e~A~kAl~~LnG-- 336 (858)
..++|||+|||.++|+++|++.|++++. |+++.+ ..+++|||||+|++.++|++|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999863 444433 235789999999999999999998864
Q ss_pred CccCCceEEEEecCCCc---------ccchhhhccchhhcHHHHHHHHhhc
Q 003007 337 SDIAGKRIKLEPSRPGG---------ARRNLMLQLNQELEQDESRILQHQV 378 (858)
Q Consensus 337 ~~i~Gr~I~V~~s~~~~---------~r~~~~~ql~~~~~~~~l~~~f~~~ 378 (858)
..+.|+.|.|+|+.+.. .+..++.++...+++++++.+|.++
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 36789999999998753 2346889999999999999999999
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.6e-22 Score=221.47 Aligned_cols=240 Identities=18% Similarity=0.270 Sum_probs=188.7
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----c-----ccccccCCCC----
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----G-----LLHYSVPNGA---- 178 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~-----~~~~~l~n~v---- 178 (858)
..+||++||.++...++-++|+..|+| +|..+...+..++|.+++|.-.+.++ . +.+..+.-.+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 569999999999999999999999987 88888888889999999887554333 1 1111111000
Q ss_pred --------------ccccCCC----CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEE
Q 003007 179 --------------GTVAGEH----PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISY 236 (858)
Q Consensus 179 --------------~~~sg~~----~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F 236 (858)
.+..... .....+...|+|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 0000000 001224679999999999999999999999999999985 345569999999
Q ss_pred cCHHHHHHHHHHhcCCccccccccccccCCCCCCCC-----------------------------------------C--
Q 003007 237 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD-----------------------------------------K-- 273 (858)
Q Consensus 237 ~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~-----------------------------------------~-- 273 (858)
.+..+|.+|++.+|+..|.||+|-|.||.++..... +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999876532110 0
Q ss_pred CC-------------------------------------------CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-
Q 003007 274 DL-------------------------------------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 309 (858)
Q Consensus 274 ~~-------------------------------------------~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri- 309 (858)
+. ...||||.|||+++|+++|.++|++||.|..+.+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00 0048999999999999999999999999999865
Q ss_pred ----CCCCccEEEEEEcCHHHHHHHHHHh-----CC-CccCCceEEEEecCCCcc
Q 003007 310 ----TPHKRHHKFIEFYDVRAAEAALKSL-----NR-SDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 310 ----t~~srG~aFVeF~d~e~A~kAl~~L-----nG-~~i~Gr~I~V~~s~~~~~ 354 (858)
+++++|.|||.|.+..+|+.||... .| ..++|+.|+|..+-....
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 7889999999999999999999977 24 578899999998876543
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.1e-22 Score=218.43 Aligned_cols=240 Identities=18% Similarity=0.328 Sum_probs=191.4
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCccc-----ccccCCC--CccccC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLL-----HYSVPNG--AGTVAG 183 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~~-----~~~l~n~--v~~~sg 183 (858)
+-++||+.+|+.+.|.+++.+|+.+|.| -|..|..+.+.+|++|+.+.....+.+.. ...++.. ...+..
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 5689999999999999999999999987 56678888899999999998776554211 1112211 111111
Q ss_pred CCCCCC--CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCc-ccc
Q 003007 184 EHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRR 256 (858)
Q Consensus 184 ~~~~~~--~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~-l~g 256 (858)
.....+ ...++|||+-|+..++|.|++++|++||.|++|++ .+.+||||||.|.+.+-|..||++|+|.. ++|
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 111112 23689999999999999999999999999999985 56799999999999999999999999954 554
Q ss_pred --ccccccccCCCCCCCCCC------------------------------------------------------------
Q 003007 257 --RKLDIHFSIPKDNPSDKD------------------------------------------------------------ 274 (858)
Q Consensus 257 --r~L~V~~a~pk~~~~~~~------------------------------------------------------------ 274 (858)
.+|-|+|+.+++....+.
T Consensus 194 cs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~ 273 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQ 273 (510)
T ss_pred CCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhH
Confidence 588888887654321000
Q ss_pred --------------------------------------------------------------------------------
Q 003007 275 -------------------------------------------------------------------------------- 274 (858)
Q Consensus 275 -------------------------------------------------------------------------------- 274 (858)
T Consensus 274 ~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~ 353 (510)
T KOG0144|consen 274 LQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAG 353 (510)
T ss_pred HHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------CCccceeeeCCC
Q 003007 275 --------------------------------------------------------------------LNQGTLVVFNLD 286 (858)
Q Consensus 275 --------------------------------------------------------------------~~~~tLfV~NLp 286 (858)
....+|||.+||
T Consensus 354 a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlP 433 (510)
T KOG0144|consen 354 AGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLP 433 (510)
T ss_pred ccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCc
Confidence 000379999999
Q ss_pred CCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 287 PSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 287 ~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.+.-+.||-..|..||.|++.++ ++-++-|+||.|++..+|..||..|||..|+.++++|...+.+.
T Consensus 434 qefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 434 QEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred hhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 99999999999999999998864 56678899999999999999999999999999999998876654
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=9.3e-22 Score=214.47 Aligned_cols=182 Identities=22% Similarity=0.342 Sum_probs=159.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc-cccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHF 263 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~ 263 (858)
...+-|||+.||.++.|+||..+|++.|+|-.+++ ++.+||||||.|.+.++|++|++.||+..|+ |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 34589999999999999999999999999999883 6889999999999999999999999999997 89999987
Q ss_pred cCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCc-eEEEEe------CCCCccEEEEEEcCHHHHHHHHHHhC-
Q 003007 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLN- 335 (858)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~-I~~iri------t~~srG~aFVeF~d~e~A~kAl~~Ln- 335 (858)
+. .++.|||+|||++.++++|++.|.+.++ |..|.+ ..++||||||+|+++..|..|.+.|-
T Consensus 161 Sv----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 161 SV----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred ee----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 64 3568999999999999999999999863 455543 35689999999999999999999875
Q ss_pred C-CccCCceEEEEecCCCcc---------cchhhhccchhhcHHHHHHHHhhcCCC
Q 003007 336 R-SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQVGSP 381 (858)
Q Consensus 336 G-~~i~Gr~I~V~~s~~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~GsP 381 (858)
| ..+.|+.+.|+|+.+... +..+++++...++++.+...|.++|.-
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~v 286 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKV 286 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccce
Confidence 4 378899999999998642 346899999999999999999999743
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=1.8e-21 Score=227.28 Aligned_cols=164 Identities=16% Similarity=0.281 Sum_probs=136.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcC------------CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~f------------G~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l 254 (858)
......++|||+|||+++|+++|+++|..| +.|..+ ...+.+|||||+|.+.++|.+||. |+|..|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~-~~~~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSV-NINKEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEE-EECCCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 345567999999999999999999999975 234444 356789999999999999999995 999999
Q ss_pred ccccccccccCCCCCC------------C-------------CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe
Q 003007 255 RRRKLDIHFSIPKDNP------------S-------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (858)
Q Consensus 255 ~gr~L~V~~a~pk~~~------------~-------------~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri 309 (858)
.|++|+|......... . .......+|||+|||..+|+++|+++|+.||.|+.+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999998753221100 0 00112358999999999999999999999999999875
Q ss_pred -----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 310 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 310 -----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
++.++|||||+|.+.++|.+|+..|||..|.|+.|.|+++...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4668999999999999999999999999999999999998643
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=1.6e-20 Score=219.51 Aligned_cols=154 Identities=12% Similarity=0.221 Sum_probs=124.3
Q ss_pred cCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCC
Q 003007 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGE 184 (858)
Q Consensus 112 ~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~ 184 (858)
..+.++||++|+.+++|.+++++|..+|.| .+..|..++..++|+|+.|.+...+.. +++..+.+...++...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 357899999999999999999999999997 667788888899999999998876642 3333333332222110
Q ss_pred C------------CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003007 185 H------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 247 (858)
Q Consensus 185 ~------------~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~ 247 (858)
. .......++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|.+|+.
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 0 011123479999999999999999999999999999874 46789999999999999999999
Q ss_pred HhcCCccccccccccccC
Q 003007 248 ALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 248 ~Lng~~l~gr~L~V~~a~ 265 (858)
.||+..|.|+.|+|.++.
T Consensus 265 amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred HhCCCeeCCeEEEEEecC
Confidence 999999999999987754
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.1e-20 Score=211.18 Aligned_cols=228 Identities=15% Similarity=0.320 Sum_probs=184.1
Q ss_pred eeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----cccccccCCCCccccCCCCCCC
Q 003007 117 FDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 189 (858)
Q Consensus 117 l~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~sg~~~~~~ 189 (858)
++|+ .+++|..++++|+..|.+ .|..|. + +.++++++|.+...+. .++...+.+...++.- ..
T Consensus 4 l~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~----s~ 73 (369)
T KOG0123|consen 4 LYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMW----SQ 73 (369)
T ss_pred eecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeeh----hc
Confidence 5666 789999999999999986 777776 4 7888889988876664 2222223333333221 12
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
+..+.|||+||+++++..+|.++|+.||+|.+|++ ..-++|| ||+|.+.++|++|+..++|..+.+++|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 22333999999999999999999999999999995 2238899 9999999999999999999999999999988766
Q ss_pred CCCCCCC----CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 267 KDNPSDK----DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 267 k~~~~~~----~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
+..+... ...-++++|.|++.+++++.|...|+.||.|..+.+ .+++++|+||+|++.++|..|++.|+|..
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCc
Confidence 5543322 123468999999999999999999999999999976 35578999999999999999999999999
Q ss_pred cCCceEEEEecCCCccc
Q 003007 339 IAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 339 i~Gr~I~V~~s~~~~~r 355 (858)
+.++.+.|..+..+..+
T Consensus 233 ~~~~~~~V~~aqkk~e~ 249 (369)
T KOG0123|consen 233 FGDKELYVGRAQKKSER 249 (369)
T ss_pred CCccceeecccccchhh
Confidence 99999999887774433
No 28
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=4.1e-21 Score=188.73 Aligned_cols=163 Identities=24% Similarity=0.339 Sum_probs=143.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
....+|||+||+..++++.|++||-+.|.|..++ ++...+|||||+|.++|+|+-|++-|+..+|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999987 46779999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEE------EeCCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i------rit~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
.... .......+|||+||++.+++..|.++|+.||.+... ..+++++++|||.|.+.+.+.+|+..|||..
T Consensus 87 s~~~---~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAHQ---KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred cccc---ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 5211 122234689999999999999999999999988764 1467889999999999999999999999999
Q ss_pred cCCceEEEEecCCCccc
Q 003007 339 IAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 339 i~Gr~I~V~~s~~~~~r 355 (858)
+..++|+|.++..+..+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999998776543
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=3.9e-21 Score=200.10 Aligned_cols=148 Identities=28% Similarity=0.468 Sum_probs=137.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 272 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~ 272 (858)
-+|||+|||.++++.+|+.||++||+|.+|.+ -|.||||..+|...|+.|++.|++-+|.|..|.|+-++.|..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk--- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK--- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccCC---
Confidence 47999999999999999999999999999986 468999999999999999999999999999999998876532
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
...+|+|+||.+.++.+||+..|++||.|++|+|. ++|+||.|+-.++|..|++.|+++++.|++++|.++...
T Consensus 77 ---~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 77 ---ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred ---CccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 45689999999999999999999999999999996 689999999999999999999999999999999987653
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3e-20 Score=207.87 Aligned_cols=276 Identities=22% Similarity=0.339 Sum_probs=216.2
Q ss_pred cccceeccCCcccccccCCCccccccCCcccccccccccCCCCCCcccccccCccccCCCCCCCCCccCccCCCCCCCCC
Q 003007 24 GGGSCGRIAGSDSYLASDDASLFSSSLPVLPHEKLNLNAMGLGRQSVDDISSGLSKVHHGVASDDPLEGVMNPAIGNSLP 103 (858)
Q Consensus 24 ~~~t~~~p~~a~~~~~~~d~~~fs~~l~~l~~~k~~~~~~~~~~~~~d~~~~~~k~~~~eee~~k~~ee~e~~~I~nlLP 103 (858)
|-..|.-|++|-+|+.+++-+++.|+..-|..+... .+ +
T Consensus 40 ~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd-------------~~--~-------------------------- 78 (369)
T KOG0123|consen 40 AYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD-------------PS--L-------------------------- 78 (369)
T ss_pred EEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC-------------Cc--e--------------------------
Confidence 446788888999999999988888887666652211 01 0
Q ss_pred CChHHHhhcCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcc----cccccCC
Q 003007 104 DDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPN 176 (858)
Q Consensus 104 ~d~d~l~~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~----~~~~l~n 176 (858)
++|.+|+.+++...+++.|+.+|.| .|+.+..- .+++ ++.|.+...+..+ ++..+.+
T Consensus 79 -------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 79 -------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNG 142 (369)
T ss_pred -------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCC
Confidence 8999999999999999999999987 66555433 7788 8888887766532 2222222
Q ss_pred CCccc-------cCCCCCC--CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHH
Q 003007 177 GAGTV-------AGEHPYG--EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAAR 243 (858)
Q Consensus 177 ~v~~~-------sg~~~~~--~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~ 243 (858)
....+ ....+.. ...-+.++|.|++.++++++|..+|..||.|.++.+ .++++||+||.|.++++|.
T Consensus 143 kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 143 KKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred CeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHH
Confidence 21111 1111111 123478999999999999999999999999999874 5678999999999999999
Q ss_pred HHHHHhcCCccccccccccccCCCCCCC--------------CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe
Q 003007 244 TAMRALQNKPLRRRKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (858)
Q Consensus 244 ~Al~~Lng~~l~gr~L~V~~a~pk~~~~--------------~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri 309 (858)
.|+..|++..+.+..+.|..+..+.... .......+|||.||+..++.+.|+.+|+.||.|.++++
T Consensus 223 ~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv 302 (369)
T KOG0123|consen 223 KAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKV 302 (369)
T ss_pred HHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEE
Confidence 9999999999999999998776532211 01234568999999999999999999999999999876
Q ss_pred ----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003007 310 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (858)
Q Consensus 310 ----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (858)
.+.++|++||+|...++|.+|+..+|+..+.++.|.|.+......++
T Consensus 303 ~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 303 MVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred EeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 46789999999999999999999999999999999999988655544
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=7.4e-20 Score=203.25 Aligned_cols=161 Identities=22% Similarity=0.368 Sum_probs=143.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
.||||++||+.++.++|.++|+.+|+|..|.+ ...+|||+||.|.-.+++++|+..+.+..|.|+.|.|..+.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999874 4568999999999999999999999999999999999998665
Q ss_pred CCCCC--------------------C--CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEE
Q 003007 268 DNPSD--------------------K--DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 321 (858)
Q Consensus 268 ~~~~~--------------------~--~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF 321 (858)
..... . +.....|.|.|||+.+.+.+|+.+|+.||.|.+|.|. ++-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43220 0 1124589999999999999999999999999999884 33469999999
Q ss_pred cCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 322 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 322 ~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.+..+|.+||+.+||..|+|++|-|.|+-++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999998765
No 32
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.81 E-value=1.4e-19 Score=207.00 Aligned_cols=162 Identities=25% Similarity=0.458 Sum_probs=140.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~--------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
++|||+||+++++.++|..+|..+|.|.++.+. ..+.|||||+|.+.++|+.|++.|+|..|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999998642 124599999999999999999999999999999999998
Q ss_pred CCCCC-----CCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC-----CccEEEEEEcCHHHHHHHHHHh
Q 003007 265 IPKDN-----PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 265 ~pk~~-----~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~-----srG~aFVeF~d~e~A~kAl~~L 334 (858)
..+.. ........++|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-++++|.+|+++|
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 61110 0011122458999999999999999999999999999998543 4899999999999999999999
Q ss_pred CCCccCCceEEEEecCCCcc
Q 003007 335 NRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 335 nG~~i~Gr~I~V~~s~~~~~ 354 (858)
..+.+.|++|.++|+.....
T Consensus 676 ~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cccceechhhheehhccchH
Confidence 99999999999999987653
No 33
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.5e-18 Score=174.34 Aligned_cols=160 Identities=24% Similarity=0.367 Sum_probs=130.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 269 (858)
...|||||+||+.+|||+-|..||.+.|.|..+++.- + .|+|-|+....+
T Consensus 4 ~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~----------~--------------------e~~v~wa~~p~n 53 (321)
T KOG0148|consen 4 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIF----------D--------------------ELKVNWATAPGN 53 (321)
T ss_pred CCCceEEeeccChhhHHHHHHHHHHhccccccceeeh----------h--------------------hhccccccCccc
Confidence 4569999999999999999999999999999887522 1 456666654433
Q ss_pred CCCCCCC-ccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003007 270 PSDKDLN-QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (858)
Q Consensus 270 ~~~~~~~-~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (858)
.+....+ .--+||+.|...++.|+|++.|.+||+|.++++ +.+++|||||.|.+.++|+.||.+|||..|.+|.
T Consensus 54 Qsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 54 QSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred CCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 3332222 346999999999999999999999999999986 6789999999999999999999999999999999
Q ss_pred EEEEecCCCccc--------------------chhhhccchhhcHHHHHHHHhhcC
Q 003007 344 IKLEPSRPGGAR--------------------RNLMLQLNQELEQDESRILQHQVG 379 (858)
Q Consensus 344 I~V~~s~~~~~r--------------------~~~~~ql~~~~~~~~l~~~f~~~G 379 (858)
|+-.|+.++... ..|+.+....++++.++..|.+||
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 999998765432 235566666678888888888776
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.1e-17 Score=178.03 Aligned_cols=156 Identities=22% Similarity=0.473 Sum_probs=137.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
.+.|||+.|.+++.|+.||.-|..||.|+++. ++++++|||||+|+-+|.|+.|++.+||..+.||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 48999999999999999999999999999998 4899999999999999999999999999999999999984 3
Q ss_pred CCCCCCC---------CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHH
Q 003007 267 KDNPSDK---------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 332 (858)
Q Consensus 267 k~~~~~~---------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~ 332 (858)
...+... ...-..+||..+.++++++||+..|+.||+|++|.+ ....+|||||+|.+...-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 3222111 112257999999999999999999999999999986 34568999999999999999999
Q ss_pred HhCCCccCCceEEEEec
Q 003007 333 SLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s 349 (858)
.||-..++|.-|+|..+
T Consensus 271 sMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKC 287 (544)
T ss_pred hcchhhcccceEecccc
Confidence 99999999999988654
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=8.2e-18 Score=173.28 Aligned_cols=166 Identities=23% Similarity=0.430 Sum_probs=138.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcc-cc--ccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL-RR--RKLDIHF 263 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l-~g--r~L~V~~ 263 (858)
..++|||+-|...-.|||++.+|..||+|.+|.+ .+.++|||||.|.+..+|..||..|+|..- -| ..|-|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5699999999999999999999999999999974 577999999999999999999999999652 22 2344444
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 003007 264 SIPKDNPS------------------------------------------------------------------------ 271 (858)
Q Consensus 264 a~pk~~~~------------------------------------------------------------------------ 271 (858)
+...+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 32211100
Q ss_pred --------------------------------------------------------------------------------
Q 003007 272 -------------------------------------------------------------------------------- 271 (858)
Q Consensus 272 -------------------------------------------------------------------------------- 271 (858)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCH
Q 003007 272 ----------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 324 (858)
Q Consensus 272 ----------------------~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~ 324 (858)
.+..+.++|||..||.+..+.||.++|-+||.|++.++ +..++.||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00012268999999999999999999999999999865 677899999999999
Q ss_pred HHHHHHHHHhCCCccCCceEEEEecCCCcccc
Q 003007 325 RAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 356 (858)
Q Consensus 325 e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r~ 356 (858)
..|+.||.+|||..|+-|+|+|.+.+|+...|
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 99999999999999999999999999987654
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=1.7e-16 Score=161.93 Aligned_cols=161 Identities=27% Similarity=0.465 Sum_probs=141.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHH----HhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRA----LFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~----lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
.++.||||+||+..+..++|+. ||++||.|..|.. +.+.+|-|||.|.+.+.|-.|+++|+|..+.|++++|+|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 4566999999999999999998 9999999999874 788999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC----------------------------------------------CCCccceeeeCCCCCCchhHHHHh
Q 003007 264 SIPKDNPSDK----------------------------------------------DLNQGTLVVFNLDPSVSNEDLRQI 297 (858)
Q Consensus 264 a~pk~~~~~~----------------------------------------------~~~~~tLfV~NLp~~vTeedL~~~ 297 (858)
|..+.....+ ...+..|++.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 8654321110 123357999999999999999999
Q ss_pred hcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecC
Q 003007 298 FGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 350 (858)
Q Consensus 298 Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~ 350 (858)
|.+|.-.++|+......+.|||+|.+...|..|...|+|..|. ...++|.+++
T Consensus 167 f~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998878899999999999999999999998886 7888888875
No 37
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.70 E-value=9.5e-17 Score=178.73 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=124.6
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----cccccccCCCCccccCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 186 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~sg~~~ 186 (858)
.++++|++||.+++|.+|+++|+.+|.| .|..|..+...+++++|.|.+.+.+. .+....+.+...++....+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 5899999999999999999999999987 56667778888999999998876664 2334444444333332222
Q ss_pred C-CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccc--cc
Q 003007 187 Y-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 258 (858)
Q Consensus 187 ~-~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g--r~ 258 (858)
. .....++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++||+.|++..+.+ ++
T Consensus 187 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~ 266 (346)
T TIGR01659 187 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP 266 (346)
T ss_pred cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 2 2234678999999999999999999999999998874 56788999999999999999999999998875 68
Q ss_pred ccccccCC
Q 003007 259 LDIHFSIP 266 (858)
Q Consensus 259 L~V~~a~p 266 (858)
|.|.++..
T Consensus 267 l~V~~a~~ 274 (346)
T TIGR01659 267 LTVRLAEE 274 (346)
T ss_pred EEEEECCc
Confidence 88988864
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.65 E-value=1.2e-13 Score=150.51 Aligned_cols=158 Identities=23% Similarity=0.381 Sum_probs=130.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhh-cCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs-~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
.|.+||.|||+++...+|++||. +.|+|+.|.+ .+|.+|||.|+|.++|.+++|++.|+...+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46799999999999999999998 6899999874 789999999999999999999999999999999998753211
Q ss_pred CCC------------------------------------------CCCCC------------------------------
Q 003007 267 KDN------------------------------------------PSDKD------------------------------ 274 (858)
Q Consensus 267 k~~------------------------------------------~~~~~------------------------------ 274 (858)
.+. +.+++
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 00000
Q ss_pred ---------CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003007 275 ---------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (858)
Q Consensus 275 ---------~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (858)
....++||.||.+.+....|++.|.--|.|..|.+ .+.++|++.|+|+.+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 01136899999999999999999999999988853 46789999999999999999999999877777
Q ss_pred ceEEEEec
Q 003007 342 KRIKLEPS 349 (858)
Q Consensus 342 r~I~V~~s 349 (858)
++..+...
T Consensus 284 ~~~~~Rl~ 291 (608)
T KOG4212|consen 284 RRMTVRLD 291 (608)
T ss_pred ccceeecc
Confidence 77777664
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=165.37 Aligned_cols=239 Identities=25% Similarity=0.332 Sum_probs=173.3
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE------------EEEecCccccccceEEeeecCccccC--cccccc------
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASGN--GLLHYS------ 173 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i------------~V~~d~~esa~~a~~~v~~~~~~~a~--~~~~~~------ 173 (858)
..-+.+++||++++|.|++.++..+|.+ ||++.+.+++..-...++-....... .+++|.
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~~lk 107 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHSELK 107 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceeeeeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHHHHh
Confidence 3568899999999999999999999986 77887777765511111111000000 000000
Q ss_pred c---CC----------------CCc------cccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCc
Q 003007 174 V---PN----------------GAG------TVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKH 228 (858)
Q Consensus 174 l---~n----------------~v~------~~sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ks 228 (858)
. .+ .+. ...+ ......+--.++|.|+-+.|+-+-|..+|++||.|..+.+..|+
T Consensus 108 t~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G-~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn 186 (492)
T KOG1190|consen 108 TDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVG-NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN 186 (492)
T ss_pred ccCchhhhhhhhHHhhhhccccccccccccccccc-ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecc
Confidence 0 00 000 0001 11111222467789999999999999999999999999888888
Q ss_pred ccE-EEEEEcCHHHHHHHHHHhcCCccc--cccccccccCC----------CC-------CCCC----------------
Q 003007 229 RGF-VMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP----------KD-------NPSD---------------- 272 (858)
Q Consensus 229 rG~-aFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~p----------k~-------~~~~---------------- 272 (858)
.|| |+|+|.|.+.|..|..+|+|+.|. .+.|+|.|+.- |. .+..
T Consensus 187 n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~ 266 (492)
T KOG1190|consen 187 NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGS 266 (492)
T ss_pred cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccc
Confidence 887 999999999999999999999886 35666665421 10 0000
Q ss_pred --------C----------------CCC--ccceeeeCCCC-CCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHH
Q 003007 273 --------K----------------DLN--QGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 325 (858)
Q Consensus 273 --------~----------------~~~--~~tLfV~NLp~-~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e 325 (858)
. ... ...|.|.||.. .+|.+.|..+|+.||+|.+|+|.-+++..|.|+|.|..
T Consensus 267 ~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~ 346 (492)
T KOG1190|consen 267 VPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQ 346 (492)
T ss_pred cccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchh
Confidence 0 000 24688888865 58999999999999999999997777789999999999
Q ss_pred HHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 326 AAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 326 ~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.|+-|+..|+|..+.||+|+|.+++...
T Consensus 347 qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 347 QAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred HHHHHHHHhhcceecCceEEEeeccCcc
Confidence 9999999999999999999999998765
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=1.2e-15 Score=171.29 Aligned_cols=237 Identities=19% Similarity=0.229 Sum_probs=175.5
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcc---cccccCCCCccc------
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNGAGTV------ 181 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~---~~~~l~n~v~~~------ 181 (858)
...+++-.+......-+++++|+..|.| .+..|..+...+|++++.|.+....... .+..+..-...+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 3556666666777788999999999976 6778888889999999999877654311 111111110000
Q ss_pred ---------cCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003007 182 ---------AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 247 (858)
Q Consensus 182 ---------sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~ 247 (858)
.........+-+.|||+||-.++++++|+.+|+.||.|..|.+ ++.++||+||+|.+.++|++|+.
T Consensus 259 knr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 259 KNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALE 338 (549)
T ss_pred HHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHH
Confidence 0000011234445999999999999999999999999998873 78999999999999999999999
Q ss_pred HhcCCccccccccccccCCCCCCCCC------------------------------------------------------
Q 003007 248 ALQNKPLRRRKLDIHFSIPKDNPSDK------------------------------------------------------ 273 (858)
Q Consensus 248 ~Lng~~l~gr~L~V~~a~pk~~~~~~------------------------------------------------------ 273 (858)
.|||..|.|+.|+|.....+....+.
T Consensus 339 ~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~ 418 (549)
T KOG0147|consen 339 QLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASA 418 (549)
T ss_pred HhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchH
Confidence 99999999999998653221110000
Q ss_pred --------------C-------CCccceeeeCCC--CCCc--------hhHHHHhhcccCceEEEEeCCCCccEEEEEEc
Q 003007 274 --------------D-------LNQGTLVVFNLD--PSVS--------NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 322 (858)
Q Consensus 274 --------------~-------~~~~tLfV~NLp--~~vT--------eedL~~~Fs~fG~I~~irit~~srG~aFVeF~ 322 (858)
. +...+|.++|+= .+.| .||+.+.+.+||.|..|.+.+.+-|+.||.|.
T Consensus 419 ~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~ 498 (549)
T KOG0147|consen 419 AQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCP 498 (549)
T ss_pred HhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecC
Confidence 0 111234555541 1222 47788899999999999999888899999999
Q ss_pred CHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 323 DVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 323 d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
+.++|..|+++|||.+|+|+.|+.+|-.
T Consensus 499 s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 499 SAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred cHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 9999999999999999999999988853
No 41
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.60 E-value=1.5e-15 Score=165.29 Aligned_cols=161 Identities=18% Similarity=0.394 Sum_probs=140.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..++|||++|+++++++.|++.|.+||+|..|++ +++++||+||+|.+.+...+++. ..-+.|.++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5799999999999999999999999999999874 67899999999999999998887 35678999999999998
Q ss_pred CCCCCCCCCC--CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 266 PKDNPSDKDL--NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 266 pk~~~~~~~~--~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
+......... ...++||++|+.++++++|++.|.+||.|..+.+ +...++|+||.|++++...+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8765433222 3468999999999999999999999998887754 45679999999999999999887 46789
Q ss_pred cCCceEEEEecCCCc
Q 003007 339 IAGKRIKLEPSRPGG 353 (858)
Q Consensus 339 i~Gr~I~V~~s~~~~ 353 (858)
|.|+.++|+.+.|+.
T Consensus 163 ~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKE 177 (311)
T ss_pred ecCceeeEeeccchh
Confidence 999999999998875
No 42
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.59 E-value=6.2e-16 Score=173.60 Aligned_cols=161 Identities=23% Similarity=0.377 Sum_probs=138.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.++..+++|+--|+..++..+|.++|+.+|.|..|.+ +..++|.|||+|.|.+....|+. |.|+.+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 4456689999999999999999999999999999873 67799999999999999999995 99999999999998
Q ss_pred ccCCCCCCCCC----------CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHH
Q 003007 263 FSIPKDNPSDK----------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAA 327 (858)
Q Consensus 263 ~a~pk~~~~~~----------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A 327 (858)
.....++.... ..+-..|||+||.+.+++++|+.+|++||.|..|.+ ++.++|||||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 75433222110 011123999999999999999999999999999864 678899999999999999
Q ss_pred HHHHHHhCCCccCCceEEEEec
Q 003007 328 EAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 328 ~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
.+|+..|||.+|.|+.|+|..-
T Consensus 334 r~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred HHHHHHhccceecCceEEEEEe
Confidence 9999999999999999998764
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=4.2e-14 Score=151.12 Aligned_cols=238 Identities=13% Similarity=0.250 Sum_probs=177.0
Q ss_pred cCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----cccccccCCCCccccCC
Q 003007 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGE 184 (858)
Q Consensus 112 ~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~sg~ 184 (858)
.+|+++||+.+..++.|..++..|..||.| -..-|+.+...++++|+.+.-.+.+. .+++..+-....++...
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 479999999999999999999999999987 55668888899999999877554443 23332222222222111
Q ss_pred CC------------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003007 185 HP------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 247 (858)
Q Consensus 185 ~~------------~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~ 247 (858)
.. .....-..|||..+-++.+|+||+.+|+.||+|..|.+ ...++||+||+|.+..+-..|+.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 00 01123468999999999999999999999999999984 56799999999999999999999
Q ss_pred HhcCCccccccccccccCCCCCC---------------------------------------------------------
Q 003007 248 ALQNKPLRRRKLDIHFSIPKDNP--------------------------------------------------------- 270 (858)
Q Consensus 248 ~Lng~~l~gr~L~V~~a~pk~~~--------------------------------------------------------- 270 (858)
.+|=..+.|.-|+|..+......
T Consensus 271 sMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~ 350 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLG 350 (544)
T ss_pred hcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCC
Confidence 99988888887777542111000
Q ss_pred --------------------------C----------------------------CC-----------------------
Q 003007 271 --------------------------S----------------------------DK----------------------- 273 (858)
Q Consensus 271 --------------------------~----------------------------~~----------------------- 273 (858)
. ++
T Consensus 351 ~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~ 430 (544)
T KOG0124|consen 351 TLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGS 430 (544)
T ss_pred CccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCc
Confidence 0 00
Q ss_pred ------------CCCccceeeeCC--CCCCc---hhHHHHhhcccCceEEEEeCCCCcc---------EEEEEEcCHHHH
Q 003007 274 ------------DLNQGTLVVFNL--DPSVS---NEDLRQIFGAYGEVKEIRETPHKRH---------HKFIEFYDVRAA 327 (858)
Q Consensus 274 ------------~~~~~tLfV~NL--p~~vT---eedL~~~Fs~fG~I~~irit~~srG---------~aFVeF~d~e~A 327 (858)
....+.++++|+ |.+++ +.+|++.+++||.|..|.|.....+ .-||+|....++
T Consensus 431 sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~ 510 (544)
T KOG0124|consen 431 SARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASET 510 (544)
T ss_pred cHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHH
Confidence 001134677786 45554 5789999999999999876433222 379999999999
Q ss_pred HHHHHHhCCCccCCceEEEEec
Q 003007 328 EAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 328 ~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
.+|+.+|+|+.+.|++++.+.-
T Consensus 511 ~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 511 HRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHhhccceecCceeehhhh
Confidence 9999999999999999886543
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.9e-14 Score=140.70 Aligned_cols=149 Identities=22% Similarity=0.335 Sum_probs=126.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCC--cccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~k--srG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
+.+++|||+|||.++.+.||.+||.+||.|..|.+..+ .-+||||+|+++.+|+.||..-+|-.+.|..|+|+|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45799999999999999999999999999999886433 3479999999999999999999999999999999997543
Q ss_pred CCCCCC----------------------CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHH
Q 003007 268 DNPSDK----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 325 (858)
Q Consensus 268 ~~~~~~----------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e 325 (858)
...... .-.+-.+.|.+||.+-+.+||+++..+-|+|-...+.. .|++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccceeeeeeehh
Confidence 211110 01224799999999999999999999999998888764 468999999999
Q ss_pred HHHHHHHHhCCCccC
Q 003007 326 AAEAALKSLNRSDIA 340 (858)
Q Consensus 326 ~A~kAl~~LnG~~i~ 340 (858)
+-+-|++.|....+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999876553
No 45
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.45 E-value=4.4e-13 Score=135.86 Aligned_cols=149 Identities=21% Similarity=0.343 Sum_probs=116.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCc----ccEEEEEEcCHHHHHHHHHHhcCCccc---cccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKH----RGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 261 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~--~~~ks----rG~aFV~F~d~e~A~~Al~~Lng~~l~---gr~L~V 261 (858)
.-|||||.+||.++...||+.||..|-..+.+. .+.+. +-+|||.|.+..+|..|+.+|||.+|. +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 469999999999999999999999986555443 34443 379999999999999999999999985 677888
Q ss_pred cccCCCCCCCC----------------------C------------C---------------------------------
Q 003007 262 HFSIPKDNPSD----------------------K------------D--------------------------------- 274 (858)
Q Consensus 262 ~~a~pk~~~~~----------------------~------------~--------------------------------- 274 (858)
++++....... . +
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 77643210000 0 0
Q ss_pred ---------------CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-CCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 275 ---------------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 275 ---------------~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
....||||-||...+||++|+++|+.|-.....++. .....+||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 001389999999999999999999999655555553 2234589999999999999999999876
Q ss_pred c
Q 003007 339 I 339 (858)
Q Consensus 339 i 339 (858)
|
T Consensus 273 ~ 273 (284)
T KOG1457|consen 273 L 273 (284)
T ss_pred e
Confidence 6
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.44 E-value=3.3e-12 Score=138.95 Aligned_cols=161 Identities=26% Similarity=0.345 Sum_probs=136.7
Q ss_pred CcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCC
Q 003007 192 SRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 270 (858)
Q Consensus 192 s~tLfV~NLP~~-vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~ 270 (858)
+..|.|.||..+ ||.+-|..+|.-||+|.+|++..+.+--|+|+|.|...|+-|+..|+|..+.|++|+|.+++-....
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 578899999755 9999999999999999999987777789999999999999999999999999999999987543211
Q ss_pred C------CC-------------------------CCCccceeeeCCCCCCchhHHHHhhcccCce-EEEEeCCCCccEEE
Q 003007 271 S------DK-------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKF 318 (858)
Q Consensus 271 ~------~~-------------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I-~~irit~~srG~aF 318 (858)
. +. -.+..+|.+.|+|.+++||+|+.+|..-|-. +..+..++.+.++.
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 0 00 0123589999999999999999999988755 55566777788999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCC-ceEEEEecCCC
Q 003007 319 IEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRPG 352 (858)
Q Consensus 319 VeF~d~e~A~kAl~~LnG~~i~G-r~I~V~~s~~~ 352 (858)
+++.++|+|..|+..|+.+.+.+ ..|+|+|++..
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999999998875 69999998753
No 47
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1.2e-13 Score=142.47 Aligned_cols=149 Identities=26% Similarity=0.438 Sum_probs=128.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCC--
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP-- 270 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~-- 270 (858)
..+||++||+.+.+.+|..+|..||.|..+.+ ..||+||+|.|..+|+.|+..|++..|.+..+.|+|+....-.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46899999999999999999999999998865 4589999999999999999999999999988999998742110
Q ss_pred ----C-----C-----CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003007 271 ----S-----D-----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 336 (858)
Q Consensus 271 ----~-----~-----~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG 336 (858)
. . -......|+|.++...+.+.+|+++|.++|.+..... .++++||+|...++|.+|+..|+|
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 0 0 0123356889999999999999999999999955544 578999999999999999999999
Q ss_pred CccCCceEEEE
Q 003007 337 SDIAGKRIKLE 347 (858)
Q Consensus 337 ~~i~Gr~I~V~ 347 (858)
..+.|+.|++.
T Consensus 156 ~~~~~~~l~~~ 166 (216)
T KOG0106|consen 156 KKLNGRRISVE 166 (216)
T ss_pred hhhcCceeeec
Confidence 99999999993
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=6.1e-13 Score=130.88 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=71.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..++|||+||++++|+++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.||+..|.|+.|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3568999999999999999999999999999976 45679999999999999999999999999999999999987
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
.+.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 643
No 49
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=1.3e-12 Score=128.53 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=73.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...+++|||+|||.++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|++..|.+++|+|+|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 356789999999999999999999999999999874 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 50
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=3.5e-13 Score=141.25 Aligned_cols=146 Identities=21% Similarity=0.345 Sum_probs=115.3
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcEEEEecCccccccceEEeeecCccccC----cccccccCCCCccccCCCCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 189 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~sg~~~~~~ 189 (858)
+.++||++||...++.++..+|+++|.| |+-| ..+.+.|+++.+...+. .+.+|.+...++.+...+. +.
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkV-lECD----IvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks-Ks 75 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKV-LECD----IVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS-KS 75 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCce-Eeee----eecccceEEeecccccHHHHhhcccceecceEEEEEeccc-cC
Confidence 4689999999999999999999999987 1111 12345555555554443 2445666554444433322 35
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
..+++|+|+||.+.++..|||..|++||.|..|++ -++|+||.|.-.++|..|++.|++..+.|++++|+.+..+-
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 57899999999999999999999999999999986 57999999999999999999999999999999999986543
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.39 E-value=1.2e-11 Score=133.17 Aligned_cols=235 Identities=18% Similarity=0.254 Sum_probs=173.2
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE------------EEEecCccccccceEEeeecCccccC--cccccccCCCCcc
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASGN--GLLHYSVPNGAGT 180 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i------------~V~~d~~esa~~a~~~v~~~~~~~a~--~~~~~~l~n~v~~ 180 (858)
--+.|++|-..+.|.++++..+.+|.+ .|+|++.+++..+..+..-....++. .+..|.... .
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq---~ 108 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQ---C 108 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhh---h
Confidence 457899999999999999999999986 45555555544332222111111111 111121111 1
Q ss_pred ccCCCCCCCCCCcEEEEeCC--CCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccc--c
Q 003007 181 VAGEHPYGEHPSRTLFVRNI--NSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--R 256 (858)
Q Consensus 181 ~sg~~~~~~~~s~tLfV~NL--P~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~--g 256 (858)
+.........++..|.+.=| =+.+|.+-|..+....|+|.+|.+..+..--|+|+|++.+.|++|..+|||..|. .
T Consensus 109 i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 109 IERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred hccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccc
Confidence 11111233345566665544 4679999999999999999999988887778999999999999999999999986 4
Q ss_pred ccccccccCCCCCCCCC---------------------------------------------------------------
Q 003007 257 RKLDIHFSIPKDNPSDK--------------------------------------------------------------- 273 (858)
Q Consensus 257 r~L~V~~a~pk~~~~~~--------------------------------------------------------------- 273 (858)
.+|+|+||+|......+
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 68999998775321000
Q ss_pred -----C----------CCccceeeeCCCCC-CchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003007 274 -----D----------LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS 337 (858)
Q Consensus 274 -----~----------~~~~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (858)
+ .....+.|.+|+.. +.-+.|..+|..||.|..|+..+.+.|-|.|++.|..+.++|+..||+.
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC
Confidence 0 00135889999865 6778999999999999999998888899999999999999999999999
Q ss_pred ccCCceEEEEecCCC
Q 003007 338 DIAGKRIKLEPSRPG 352 (858)
Q Consensus 338 ~i~Gr~I~V~~s~~~ 352 (858)
.+.|.+|.|.+++..
T Consensus 349 ~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQN 363 (494)
T ss_pred ccccceEEEeecccc
Confidence 999999999998643
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.35 E-value=1.1e-11 Score=133.06 Aligned_cols=164 Identities=15% Similarity=0.247 Sum_probs=132.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EE----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~s--------v~----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
...++.|||.|||.++|.+|+.++|++||-|.+ |+ -.++-+|=|++.|...++.+.|+..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 345678999999999999999999999998754 22 257788999999999999999999999999999
Q ss_pred ccccccccCCCCC--------C--------------------------CCCCCCccceeeeCCCC----CCc-------h
Q 003007 257 RKLDIHFSIPKDN--------P--------------------------SDKDLNQGTLVVFNLDP----SVS-------N 291 (858)
Q Consensus 257 r~L~V~~a~pk~~--------~--------------------------~~~~~~~~tLfV~NLp~----~vT-------e 291 (858)
+.|+|+.|.-... . ..+....++|.++|+=. ..+ +
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999987632110 0 00111236899999732 122 5
Q ss_pred hHHHHhhcccCceEEEEeC-CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 292 EDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 292 edL~~~Fs~fG~I~~irit-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
++|++-+++||.|.+|.+. .+..|.+-|.|.+.++|..||+.|+|+.++|++|......-+
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 7788889999999999874 567899999999999999999999999999999998766543
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.28 E-value=9.3e-12 Score=105.31 Aligned_cols=66 Identities=36% Similarity=0.634 Sum_probs=61.5
Q ss_pred eeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003007 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (858)
Q Consensus 280 LfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (858)
|||+|||.++|+++|+++|++||.|..+.+. +..+++|||+|.+.++|++|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999998763 45789999999999999999999999999999885
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.9e-12 Score=124.52 Aligned_cols=76 Identities=30% Similarity=0.488 Sum_probs=72.5
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.++|||+||+..+++.||+.+|.+||.|.+|.|.....|||||||+|+.||+.|+..|+|+.|.|.+|+|+++.-.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5789999999999999999999999999999998888999999999999999999999999999999999998654
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.24 E-value=2e-11 Score=103.31 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=61.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 195 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 195 LfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
|||+|||.++++++|+++|++||.|..+.+ .++.+|||||+|.+.++|++|+..|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988874 356899999999999999999999999999999874
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=2.2e-10 Score=125.61 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=63.9
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
++|+|+|||++.|.+.|++-|..||.|+.+.| .++++ +.|+|.++++|++|+..|+|..++|+.|+|.+
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 47999999999999999999999999999988 45555 59999999999999999999999999999986
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=8e-11 Score=134.43 Aligned_cols=164 Identities=17% Similarity=0.339 Sum_probs=127.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
......+||++||..+++.+++++...||.+.... .++.++||||.+|.++.....|+..|+|+.+.+++|.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34557999999999999999999999999987765 2578999999999999999999999999999999999988
Q ss_pred cCCCCCCCCC--------------------CCCccceeeeCCC--CCC-c-------hhHHHHhhcccCceEEEEeCCC-
Q 003007 264 SIPKDNPSDK--------------------DLNQGTLVVFNLD--PSV-S-------NEDLRQIFGAYGEVKEIRETPH- 312 (858)
Q Consensus 264 a~pk~~~~~~--------------------~~~~~tLfV~NLp--~~v-T-------eedL~~~Fs~fG~I~~irit~~- 312 (858)
+.+....... .+....|.+.|+= .++ . -|+++.-+.+||.|++|.+...
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 7654321111 1111223333321 111 1 2567788889999999976321
Q ss_pred -------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 313 -------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 313 -------srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
..|..||+|.+.++|++|+.+|+|..+.|+.|...|-...
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 3577999999999999999999999999999999886543
No 58
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=1.1e-10 Score=121.62 Aligned_cols=119 Identities=27% Similarity=0.444 Sum_probs=101.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
.++|||+|||.++++++|+++|.+||.|..+.+ +++++|||||+|.+.++|..|+..+++..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999987763 678999999999999999999999999999999999999542
Q ss_pred ----CCCCC----------------CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC
Q 003007 267 ----KDNPS----------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 310 (858)
Q Consensus 267 ----k~~~~----------------~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit 310 (858)
+.... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 22111 011233579999999999999999999999999777653
No 59
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.7e-11 Score=119.43 Aligned_cols=77 Identities=26% Similarity=0.512 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
-.++|||+||+..+++.||..+|..||.|.+|.+.....|||||+|+|+.+|+.|+..|+|..|.|..|.|+.+.-.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 36899999999999999999999999999999998889999999999999999999999999999999999987543
No 60
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=6.9e-11 Score=126.05 Aligned_cols=99 Identities=18% Similarity=0.293 Sum_probs=79.5
Q ss_pred cCCccccccccccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHH
Q 003007 250 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRA 326 (858)
Q Consensus 250 ng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~ 326 (858)
++....|.++.++-+.. +......+.|+|+|||+...+-||+.+|++||+|.+|.|. ..+||||||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 34445555555443321 1222234689999999999999999999999999999873 4589999999999999
Q ss_pred HHHHHHHhCCCccCCceEEEEecCCC
Q 003007 327 AEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 327 A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
|++|..+|+|..|.||+|+|..+...
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999987654
No 61
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=5.2e-11 Score=134.77 Aligned_cols=163 Identities=27% Similarity=0.403 Sum_probs=131.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++..+.|+.|+.......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 35678999999999999999999999999999999989999999999999999999999999999999998873322111
Q ss_pred CC------------------CCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHH
Q 003007 268 DN------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEA 329 (858)
Q Consensus 268 ~~------------------~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~k 329 (858)
.. .....-+...+++- |++..+...++.+|+.+|.+.. +.++.....-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhh
Confidence 00 00011123455554 9999999999999999999988 8888777789999999999977
Q ss_pred HHHHhCCCccCCceEEEEecCCCc
Q 003007 330 ALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 330 Al~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
++..+ |..+.++...+.++.+.+
T Consensus 229 ~~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 229 SEPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred cccCC-ceecCCCCceEEecCCCc
Confidence 77754 777777777777877743
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.13 E-value=7.2e-11 Score=117.08 Aligned_cols=155 Identities=16% Similarity=0.257 Sum_probs=122.3
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC----cccccccCCCCcccc--CCC
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVA--GEH 185 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~s--g~~ 185 (858)
..+||++|+..+.+..++++|-+.|.| .+..|......++++|+.|...+.+. .++..++-+...++. ...
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 469999999999999999999999986 44555566678899999888776664 233334444432221 122
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE------EeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL------YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv------~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L 259 (858)
...-....+|||+||.+.++|..|.++|+.||.|.+. ..++..+|||||.|.+.+.+++|+..++|+.+..+++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 2333455899999999999999999999999987652 1367899999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 003007 260 DIHFSIPKDN 269 (858)
Q Consensus 260 ~V~~a~pk~~ 269 (858)
.|.++..+..
T Consensus 170 tv~ya~k~~~ 179 (203)
T KOG0131|consen 170 TVSYAFKKDT 179 (203)
T ss_pred EEEEEEecCC
Confidence 9999976543
No 63
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.13 E-value=4.3e-10 Score=125.73 Aligned_cols=156 Identities=18% Similarity=0.282 Sum_probs=119.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE---eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~---~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
.-.|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|--+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 35677899999999999999999885 55544 468899999999999999999999 47777778888776553332
Q ss_pred CC-------CCCCCCccceeeeCCCCCCchhHHHHhhcccCceEE-EEe----CCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003007 269 NP-------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (858)
Q Consensus 269 ~~-------~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~-iri----t~~srG~aFVeF~d~e~A~kAl~~LnG 336 (858)
.. .....+...|-+++||+.+|++||.++|+..-.|.. |.+ -+++.|-|||+|++.+.|++||.. +.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 11 111235678999999999999999999997644433 222 244678999999999999999985 55
Q ss_pred CccCCceEEEEecC
Q 003007 337 SDIAGKRIKLEPSR 350 (858)
Q Consensus 337 ~~i~Gr~I~V~~s~ 350 (858)
..|.-+-|+|-.+.
T Consensus 167 e~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSS 180 (510)
T ss_pred HhhccceEEeehhH
Confidence 66766777776554
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=8.2e-11 Score=110.50 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=69.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+++|||+||...++||+|.+||+++|+|+.|.+ +....|||||+|+..++|+.|++.+++..+..++|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999863 4456799999999999999999999999999999999885
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.4e-10 Score=119.72 Aligned_cols=77 Identities=23% Similarity=0.401 Sum_probs=72.5
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|-|.||+.++++++|+++|.+||.|..|.+ ++.++|||||.|.++++|++||+.|||.-.+.-.|.|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 3468999999999999999999999999999854 78899999999999999999999999999999999999999
Q ss_pred CC
Q 003007 351 PG 352 (858)
Q Consensus 351 ~~ 352 (858)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 66
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=104.49 Aligned_cols=78 Identities=28% Similarity=0.485 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
..++.|||+|||.++|.|+..++|.+||.|+.+++ +...+|.|||-|++..+|++|+..|.|..+.++.|.|.|-.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 45689999999999999999999999999999996 5668999999999999999999999999999999999887553
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.11 E-value=2.2e-10 Score=121.36 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=67.8
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCC--CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~--~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
..+|||+||++.+|+++|+++|+.||+|.+|++.. ..+|||||+|.+.++|+.||. |||..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 35899999999999999999999999999998843 357999999999999999996 999999999999999764
No 68
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.9e-10 Score=117.34 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
+...+|-|.||+.+++|++|++||.+||.|.++++ ++.++|||||.|.+.++|.+||..|+|.-+.+--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35689999999999999999999999999999874 8999999999999999999999999999999999999999
Q ss_pred CCC
Q 003007 265 IPK 267 (858)
Q Consensus 265 ~pk 267 (858)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 885
No 69
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.8e-10 Score=102.53 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=72.9
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
..-|||+|||+++|.|+..++|++||.|..||+ ++.-+|-|||.|++..+|.+|++.|+|..+.++-|.|-+-.+...
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 457999999999999999999999999999998 566789999999999999999999999999999999998777654
Q ss_pred cc
Q 003007 355 RR 356 (858)
Q Consensus 355 r~ 356 (858)
.+
T Consensus 98 ~~ 99 (124)
T KOG0114|consen 98 FK 99 (124)
T ss_pred HH
Confidence 33
No 70
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=1.4e-10 Score=108.91 Aligned_cols=75 Identities=21% Similarity=0.365 Sum_probs=68.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..+||||+||.+.++||+|.++|+++|+|+.|.+ +....||+||+|+..++|+.|++-++|+.++.+.|.+.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 3579999999999999999999999999999843 55678999999999999999999999999999999999854
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.08 E-value=4.2e-10 Score=93.84 Aligned_cols=69 Identities=32% Similarity=0.643 Sum_probs=63.2
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC---CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~---srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
+|||+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|++|++.++|..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999987533 47999999999999999999999999999998874
No 72
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.07 E-value=4e-10 Score=119.41 Aligned_cols=76 Identities=18% Similarity=0.292 Sum_probs=68.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~--~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
.++|||+|||+.+++++|+++|+.||+|.+|++. ...+|||||+|.+.++|+.|+. |+|..|.|++|.|.++....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 5899999999999999999999999999999862 3368999999999999999996 99999999999999986443
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.07 E-value=3.7e-10 Score=96.46 Aligned_cols=66 Identities=35% Similarity=0.644 Sum_probs=59.0
Q ss_pred eeeeCCCCCCchhHHHHhhcccCceEEEEeCCC----CccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003007 280 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (858)
Q Consensus 280 LfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~----srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (858)
|||+|||.++++++|+++|+.||.|..+++... .+++|||+|.+.++|.+|++.++|..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999987433 479999999999999999999999999999885
No 74
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.06 E-value=6.5e-10 Score=121.53 Aligned_cols=157 Identities=13% Similarity=0.230 Sum_probs=120.9
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC-cccc--cccCCCCc-------c
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN-GLLH--YSVPNGAG-------T 180 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~-~~~~--~~l~n~v~-------~ 180 (858)
..+++|++|.++.+++.+.+.|.++|.+ .|+.|......+++.++.|.+..... .+.. ..+..... .
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 4789999999999999999999999987 67777888888999999999543332 2211 11222111 1
Q ss_pred ccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc
Q 003007 181 VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (858)
Q Consensus 181 ~sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~ 255 (858)
.............+|||+.||.+++++++++.|++||.|..+.+ +.+.+||+||.|.+.+.+++++. ...+.|.
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~ 164 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN 164 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec
Confidence 11111112223569999999999999999999999998877652 67899999999999999999987 5788899
Q ss_pred cccccccccCCCCCCC
Q 003007 256 RRKLDIHFSIPKDNPS 271 (858)
Q Consensus 256 gr~L~V~~a~pk~~~~ 271 (858)
++++.|..|.|++...
T Consensus 165 gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQ 180 (311)
T ss_pred CceeeEeeccchhhcc
Confidence 9999999999886543
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=6.4e-10 Score=91.34 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=51.8
Q ss_pred HHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 294 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 294 L~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
|+++|++||+|+++.+..+.+++|||+|.+.++|++|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997766799999999999999999999999999999999986
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=4.3e-10 Score=120.07 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
....+.|+|.|||....|-||+.+|++||.|.+|.+ ..-+||||||+|+++++|++|-.+|+|..+.||+|+|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 344589999999999999999999999999999884 45699999999999999999999999999999999999987
Q ss_pred CC
Q 003007 266 PK 267 (858)
Q Consensus 266 pk 267 (858)
++
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.03 E-value=7.3e-10 Score=94.61 Aligned_cols=66 Identities=23% Similarity=0.545 Sum_probs=58.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 195 LFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 195 LfV~NLP~~vteeeLr~lFs~fG~I~sv~~~----~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
|||+|||+++++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999988742 34689999999999999999999998999998874
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=98.99 E-value=8.6e-10 Score=122.33 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=69.1
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCC-CCccEEEEEEcCH--HHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~-~srG~aFVeF~d~--e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
...+|||+||.+++|++||+.+|+.||.|++|.|.. ..||||||+|.+. .++.+||..|||.++.|+.|+|..+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 446899999999999999999999999999997631 2389999999987 7899999999999999999999998775
No 79
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=9.7e-10 Score=109.09 Aligned_cols=77 Identities=31% Similarity=0.503 Sum_probs=69.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
+.++|||+|||.++.+.||+++|-+||.|.+|.+. +....||||+|++..+|+.||..-+|..++|++|+|+|.+-.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999763 334579999999999999999999999999999999998765
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.98 E-value=5.5e-09 Score=113.00 Aligned_cols=172 Identities=20% Similarity=0.309 Sum_probs=134.3
Q ss_pred CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC--Ccccccccc
Q 003007 183 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLD 260 (858)
Q Consensus 183 g~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng--~~l~gr~L~ 260 (858)
...+....++-.|-|++|-..++|.+|.+-.+.||.|..+.. ...+.-|.|+|+|++.|+.++.--.. ..+.|+..-
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 344556667889999999999999999999999999988754 45667899999999999999874333 335577777
Q ss_pred ccccCCCCCCC---CCCCCcccee--eeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC
Q 003007 261 IHFSIPKDNPS---DKDLNQGTLV--VFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 261 V~~a~pk~~~~---~~~~~~~tLf--V~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
+.|+..+.... +....+..|. |-|--+.+|.+-|.+++.+.|.|..|.|..+..-.|.|||++.+.|++|..+||
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcc
Confidence 77764432211 1111223343 445556899999999999999999999987766689999999999999999999
Q ss_pred CCccC-C-ceEEEEecCCCccc
Q 003007 336 RSDIA-G-KRIKLEPSRPGGAR 355 (858)
Q Consensus 336 G~~i~-G-r~I~V~~s~~~~~r 355 (858)
|..|. | ++|+|+|++|..-+
T Consensus 181 GADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred cccccccceeEEEEecCcceee
Confidence 99886 4 78999999997543
No 81
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=8.1e-10 Score=113.78 Aligned_cols=76 Identities=24% Similarity=0.455 Sum_probs=65.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.+..-++|||++|++++..++|++.|++||+|.+.++ +++++|||||+|.|.++|.+|++. -.-.|.||+..|.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccc
Confidence 3445589999999999999999999999999988763 789999999999999999999984 3456788887776
Q ss_pred cc
Q 003007 263 FS 264 (858)
Q Consensus 263 ~a 264 (858)
.|
T Consensus 87 lA 88 (247)
T KOG0149|consen 87 LA 88 (247)
T ss_pred hh
Confidence 65
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=98.96 E-value=2e-09 Score=89.76 Aligned_cols=69 Identities=30% Similarity=0.580 Sum_probs=62.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~---~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
+|||+|||..+++++|+++|++||+|..+.+. +..+|+|||+|.+.++|++|+..+++..+.+++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988753 3357999999999999999999999999999888763
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=2.9e-09 Score=112.72 Aligned_cols=89 Identities=31% Similarity=0.432 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEE-----eCCCCccEEEEEEcCHHHHHHHHHHhCCCcc
Q 003007 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (858)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~ir-----it~~srG~aFVeF~d~e~A~kAl~~LnG~~i 339 (858)
.|..++.....+-+||||.-|+++++|.+|+..|+.||.|+.|+ ++++++|||||+|++..+..+|.+..+|..|
T Consensus 89 dP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I 168 (335)
T KOG0113|consen 89 DPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI 168 (335)
T ss_pred CCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee
Confidence 44444444444568999999999999999999999999999996 4789999999999999999999999999999
Q ss_pred CCceEEEEecCCCc
Q 003007 340 AGKRIKLEPSRPGG 353 (858)
Q Consensus 340 ~Gr~I~V~~s~~~~ 353 (858)
+|+.|.|.+-+-..
T Consensus 169 dgrri~VDvERgRT 182 (335)
T KOG0113|consen 169 DGRRILVDVERGRT 182 (335)
T ss_pred cCcEEEEEeccccc
Confidence 99999999876543
No 84
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.93 E-value=4.8e-09 Score=113.74 Aligned_cols=161 Identities=12% Similarity=0.181 Sum_probs=112.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhc-----CCC--EEEEE-eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQ-----YGD--IRTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~-----fG~--I~sv~-~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
.-.|-+++||+++++.++.++|.. -|. |.-|. ..++..|-|||.|..+++|+.|+.+ +...+..|-|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 356778999999999999999962 122 22222 2677889999999999999999985 44444444443321
Q ss_pred cCCC--------------C-------------CCCCCCCCccceeeeCCCCCCchhHHHHhhcccCc-eEE--EE--e--
Q 003007 264 SIPK--------------D-------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKE--IR--E-- 309 (858)
Q Consensus 264 a~pk--------------~-------------~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~-I~~--ir--i-- 309 (858)
+... - ..........+|-+++||++.+.|+|.++|..|-. |+. |. +
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 1000 0 00001112468999999999999999999998853 322 32 2
Q ss_pred CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 310 TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 310 t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.++..|-|||+|.+.++|..|....+.+....+-|+|-.+.-..
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 35567899999999999999999887777778888887655433
No 85
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=4.5e-09 Score=88.08 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=64.1
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC----CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~----srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999987543 378999999999999999999999999999999864
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.92 E-value=1e-09 Score=110.75 Aligned_cols=76 Identities=33% Similarity=0.543 Sum_probs=70.5
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
..+|-|-||-+-++.++|+.+|++||.|-+|.| +..++|||||.|.+..||+.|+++|+|..++|+.|.|.+++-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 357999999999999999999999999999965 778999999999999999999999999999999999988765
Q ss_pred C
Q 003007 352 G 352 (858)
Q Consensus 352 ~ 352 (858)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 4
No 87
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.91 E-value=1.6e-09 Score=109.22 Aligned_cols=77 Identities=27% Similarity=0.509 Sum_probs=71.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
-.....|.|-||-+-++.++|+.+|++||.|..|+| +..++|||||.|.+..+|+.|+.+|+|..|.|+.|.|++
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 345689999999999999999999999999999985 788999999999999999999999999999999999998
Q ss_pred cC
Q 003007 264 SI 265 (858)
Q Consensus 264 a~ 265 (858)
|.
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 74
No 88
>smart00360 RRM RNA recognition motif.
Probab=98.91 E-value=3.5e-09 Score=87.80 Aligned_cols=66 Identities=33% Similarity=0.649 Sum_probs=59.8
Q ss_pred eeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 282 VFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 282 V~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
|+|||..+++++|+++|++||.|..+.+. +.++++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999763 3347899999999999999999999999999998874
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.90 E-value=4.4e-08 Score=109.93 Aligned_cols=232 Identities=14% Similarity=0.161 Sum_probs=148.6
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcEEEEecCccccccceEEeeecCccccCcc---cccccCCC---------Ccccc
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGL---LHYSVPNG---------AGTVA 182 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i~V~~d~~esa~~a~~~v~~~~~~~a~~~---~~~~l~n~---------v~~~s 182 (858)
..+-+++||++|++.|+.++|++++---|.+...+++..+-++|.+...+.+... ..-.+.+. .....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 4566899999999999999999988655555555677777777777655544311 00011111 00000
Q ss_pred CC---CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE-E----EeCCCcccEEEEEEcCHHHHHHHHHHhcCCcc
Q 003007 183 GE---HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-L----YTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (858)
Q Consensus 183 g~---~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~s-v----~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l 254 (858)
.. .+........|-+++||+.+|++||.++|+-.--|.. + .-.++..|-|||+|.+.+.|++|+.. +...|
T Consensus 91 ~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i 169 (510)
T KOG4211|consen 91 VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI 169 (510)
T ss_pred cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh
Confidence 00 1112235678999999999999999999996543332 1 12456788999999999999999975 44444
Q ss_pred cccccccccc-----------------------CCCCCCC---------------C------------------------
Q 003007 255 RRRKLDIHFS-----------------------IPKDNPS---------------D------------------------ 272 (858)
Q Consensus 255 ~gr~L~V~~a-----------------------~pk~~~~---------------~------------------------ 272 (858)
..|-|.|-.+ .+..... .
T Consensus 170 GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~g 249 (510)
T KOG4211|consen 170 GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFG 249 (510)
T ss_pred ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccc
Confidence 4444433111 0000000 0
Q ss_pred -----CCC---------------------Cc-cceeeeCCCCCCchhHHHHhhcccCce-EEEE--eCCCCccEEEEEEc
Q 003007 273 -----KDL---------------------NQ-GTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIR--ETPHKRHHKFIEFY 322 (858)
Q Consensus 273 -----~~~---------------------~~-~tLfV~NLp~~vTeedL~~~Fs~fG~I-~~ir--it~~srG~aFVeF~ 322 (858)
++. .. ..+..++||+..++.++...|+..-.+ ..|. ..++..|-|+|+|.
T Consensus 250 s~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~ 329 (510)
T KOG4211|consen 250 SYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFA 329 (510)
T ss_pred ccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecc
Confidence 000 00 246778999999999999999975332 2233 36677889999999
Q ss_pred CHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 323 DVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 323 d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
+.++|..|+-. ++..+..+-|++-.
T Consensus 330 t~edav~Amsk-d~anm~hrYVElFl 354 (510)
T KOG4211|consen 330 TGEDAVGAMGK-DGANMGHRYVELFL 354 (510)
T ss_pred cchhhHhhhcc-CCcccCcceeeecc
Confidence 99999999874 55566666665543
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=98.90 E-value=3e-09 Score=118.16 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=85.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEEcCH--HHHHHHHHHhcCCccccccccccccCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-~~ksrG~aFV~F~d~--e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
....+|||+||++.+++++|+.+|..||.|.+|.+ .-..||||||+|... .++++||..|+|..+.|+.|+|..|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34589999999999999999999999999999884 222389999999987 789999999999999999999998876
Q ss_pred CCC------CCC-CCCCccceeeeCCCCC-CchhHHHHhhcccCceEEEEe
Q 003007 267 KDN------PSD-KDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRE 309 (858)
Q Consensus 267 k~~------~~~-~~~~~~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~iri 309 (858)
.-. ... ......++- |+.. .....|+-+|-+.++|+.+-+
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEecccccccccccc
Confidence 410 000 000111111 1221 234456777777788877644
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=4.9e-09 Score=109.66 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=65.9
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeC--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..+|||+||++++|+++|+++|+.||+|.+|++. +..+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999874 3456899999999999999995 99999999999998654
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=2.3e-09 Score=110.51 Aligned_cols=77 Identities=27% Similarity=0.350 Sum_probs=68.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
.-++|||++|+..++.|+|++.|++||+|++..+ +++++|||||+|.|.++|.+|++.- .-.|+||+..|.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 4568999999999999999999999999999854 6889999999999999999999854 468899999998887
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
-+.
T Consensus 90 lg~ 92 (247)
T KOG0149|consen 90 LGG 92 (247)
T ss_pred hcC
Confidence 644
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.3e-09 Score=110.55 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=74.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..+||||++|-.++++.-|...|-+||+|+.|.+ +.+.||||||+|...|||.+||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3569999999999999999999999999999975 56789999999999999999999999999999999999999
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
|...+
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 97644
No 94
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=4.9e-09 Score=110.96 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
...++-+||||.-|+.+++|..|+..|+.||+|+.|. ++++++|||||+|.+..+...|.+...|..|.|+.|-|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 3457889999999999999999999999999999886 58999999999999999999999999999999999998
Q ss_pred cccC
Q 003007 262 HFSI 265 (858)
Q Consensus 262 ~~a~ 265 (858)
.+-.
T Consensus 176 DvER 179 (335)
T KOG0113|consen 176 DVER 179 (335)
T ss_pred Eecc
Confidence 8754
No 95
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.87 E-value=4e-09 Score=86.63 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=50.9
Q ss_pred HHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 209 LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 209 Lr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|+|..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999875555799999999999999999999999999999999985
No 96
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.84 E-value=7.9e-09 Score=108.13 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=65.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+|||+||++.+|+++|+++|+.||+|..|++ .++.++||||+|.++++|+.|+. |+|..|.+++|.|...
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 479999999999999999999999999999985 45567899999999999999996 9999999999988754
No 97
>smart00360 RRM RNA recognition motif.
Probab=98.83 E-value=8.8e-09 Score=85.37 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=59.3
Q ss_pred EeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 197 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 197 V~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|+..+++..+.+++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999988874 34568999999999999999999999999999888763
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.82 E-value=1.4e-08 Score=85.00 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=63.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCC----CcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~----ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
+|+|+|||..+++++|+++|+.||+|..+.+.. ..+|+|||+|.+.++|..|++.+++..+.++++.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999887532 3489999999999999999999999999999988764
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=106.30 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=70.0
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
..+|||+|||.++|+++|+++|..||.|..+++ ++.++|+|||+|.+.++|..|+..|+|..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 579999999999999999999999999988864 567899999999999999999999999999999999999764
No 100
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.3e-09 Score=107.77 Aligned_cols=81 Identities=26% Similarity=0.507 Sum_probs=75.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+++|||++|..+|+|.-|..-|-.||+|..|.+ +.++||||||+|...|+|..||..|++..|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45799999999999999999999999999999874 6789999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003007 265 IPKDNP 270 (858)
Q Consensus 265 ~pk~~~ 270 (858)
.|.+..
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986643
No 101
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=8.8e-09 Score=97.75 Aligned_cols=79 Identities=22% Similarity=0.394 Sum_probs=71.5
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....-|||.++....|+++|.+.|..||+|+.+.+ ++-.+||++|+|++.++|++|+.+|||..+.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 344567999999999999999999999999999965 566789999999999999999999999999999999998
Q ss_pred cCCC
Q 003007 349 SRPG 352 (858)
Q Consensus 349 s~~~ 352 (858)
+-.+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 7543
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.71 E-value=2.3e-08 Score=114.00 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=73.2
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
..+||+|+|+++++++|..+|+..|.|.++++ +++.+||||++|.+.++|++|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999975 7889999999999999999999999999999999999998776
Q ss_pred ccc
Q 003007 353 GAR 355 (858)
Q Consensus 353 ~~r 355 (858)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 544
No 103
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=3.3e-09 Score=105.23 Aligned_cols=74 Identities=23% Similarity=0.411 Sum_probs=69.0
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
...-|||+|||+++||.||.-+|++||+|..|.+ |++++||||++|+|.+...-|+..|||..|.|+.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567999999999999999999999999999964 7899999999999999999999999999999999999753
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=98.68 E-value=4.4e-08 Score=84.46 Aligned_cols=56 Identities=32% Similarity=0.500 Sum_probs=50.2
Q ss_pred hhHHHHhhc----ccCceEEEE-e-----C--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003007 291 NEDLRQIFG----AYGEVKEIR-E-----T--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (858)
Q Consensus 291 eedL~~~Fs----~fG~I~~ir-i-----t--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (858)
+++|+++|+ +||.|.+|. + + +.++|+|||+|.+.++|.+|++.|||+.+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999884 2 2 667999999999999999999999999999999986
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.68 E-value=3.4e-08 Score=101.68 Aligned_cols=76 Identities=29% Similarity=0.597 Sum_probs=71.4
Q ss_pred cceeeeCCCCCCchhHHHH----hhcccCceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 278 GTLVVFNLDPSVSNEDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~----~Fs~fG~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
.||||.||+..+..++|+. +|++||+|.+|.. +++.||.|||.|++.+.|..|+++|+|..+.|+.++|.|++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 3999999999999999998 9999999999976 677899999999999999999999999999999999999987
Q ss_pred Cc
Q 003007 352 GG 353 (858)
Q Consensus 352 ~~ 353 (858)
+.
T Consensus 90 ~s 91 (221)
T KOG4206|consen 90 DS 91 (221)
T ss_pred cc
Confidence 65
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.67 E-value=2.7e-08 Score=113.31 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=71.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
+.|||+|||+++++++|.++|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999987 38999999999999999999999999999999999999998644
Q ss_pred C
Q 003007 268 D 268 (858)
Q Consensus 268 ~ 268 (858)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 107
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=3e-08 Score=94.14 Aligned_cols=79 Identities=18% Similarity=0.462 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
......|||.++-...+|++|.+.|..||+|..+.+ ++-.+|||+|+|.+.++|++|+.++||..|.+++|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 344579999999999999999999999999998873 778999999999999999999999999999999999999
Q ss_pred cCCC
Q 003007 264 SIPK 267 (858)
Q Consensus 264 a~pk 267 (858)
+.-+
T Consensus 149 ~Fv~ 152 (170)
T KOG0130|consen 149 CFVK 152 (170)
T ss_pred EEec
Confidence 8644
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.6e-07 Score=104.47 Aligned_cols=156 Identities=21% Similarity=0.349 Sum_probs=109.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-------eCCCccc---EEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------TACKHRG---FVMISYYDIRAARTAMRALQNKPLRRRK 258 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-------~~~ksrG---~aFV~F~d~e~A~~Al~~Lng~~l~gr~ 258 (858)
..-+++|||++||++++|++|...|..||.+..=- -....+| |+|+-|+++...+.-+.+..- ....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 34578999999999999999999999999875311 0122456 999999999998887765432 2222
Q ss_pred ccccccCCCCC-------------------CCCCCCCccceeeeCCCCCCchhHHHHhhc-ccCceEEEEeC-----CCC
Q 003007 259 LDIHFSIPKDN-------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRET-----PHK 313 (858)
Q Consensus 259 L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs-~fG~I~~irit-----~~s 313 (858)
++++.+.+... ....-...+||||++||.-++-++|-.+|+ -||.|..+-|. +-.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 22222211110 001112457999999999999999999999 79999988652 336
Q ss_pred ccEEEEEEcCHHHHHHHHHH----hCCCccCCceEEEEe
Q 003007 314 RHHKFIEFYDVRAAEAALKS----LNRSDIAGKRIKLEP 348 (858)
Q Consensus 314 rG~aFVeF~d~e~A~kAl~~----LnG~~i~Gr~I~V~~ 348 (858)
+|-|-|.|.+..+=.+||.+ |+..+| .|+|+|+.
T Consensus 413 kGaGRVtFsnqqsYi~AIsarFvql~h~d~-~KRVEIkP 450 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISARFVQLDHTDI-DKRVEIKP 450 (520)
T ss_pred CCcceeeecccHHHHHHHhhheEEEecccc-ceeeeecc
Confidence 88999999999999999873 222222 34666654
No 109
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=4.5e-09 Score=104.31 Aligned_cols=77 Identities=19% Similarity=0.405 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
.+.-|||+|||++.||.+|.-+|++||+|..|.+ +++++||||+.|+|.++...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4678999999999999999999999999998863 89999999999999999999999999999999999998654
Q ss_pred CC
Q 003007 266 PK 267 (858)
Q Consensus 266 pk 267 (858)
..
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 33
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.1e-08 Score=118.68 Aligned_cols=158 Identities=22% Similarity=0.376 Sum_probs=136.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~----~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..+++||++||+..+++.+|+..|..+|.|.+|.+. +....|+||.|.+...+-.|...+.+..|..-.+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 457899999999999999999999999999998852 2344599999999999999999999999987777887775
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCC--ce
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KR 343 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G--r~ 343 (858)
++. ...+.+++++|...+....|.+.|..||.|..|.+. +..-|++|.|.+...|+.|.+.|-|..+.| ++
T Consensus 450 ~ks------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 450 PKS------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred ccc------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 532 345679999999999999999999999999999884 345699999999999999999999999986 88
Q ss_pred EEEEecCCCcc
Q 003007 344 IKLEPSRPGGA 354 (858)
Q Consensus 344 I~V~~s~~~~~ 354 (858)
|.|.|+.....
T Consensus 523 ~rvdla~~~~~ 533 (975)
T KOG0112|consen 523 LRVDLASPPGA 533 (975)
T ss_pred cccccccCCCC
Confidence 99999877653
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.56 E-value=9.5e-08 Score=111.64 Aligned_cols=76 Identities=30% Similarity=0.538 Sum_probs=71.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
+|||||+.|+..++|.+|..+|+.||+|.+|.+ ...+|||||.+....+|.+|+.+|.+..+..+.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 689999999999999999999999999999975 4589999999999999999999999999999999999997544
No 112
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.56 E-value=1.3e-07 Score=110.57 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=74.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (858)
..+||||+.|+..++|.||.++|+.||.|.+|.+.. +++||||.+..+.+|.+|+.+|+...+.++.|+|.|+..++.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 447999999999999999999999999999999865 6899999999999999999999999999999999999988876
Q ss_pred c
Q 003007 356 R 356 (858)
Q Consensus 356 ~ 356 (858)
.
T Consensus 499 s 499 (894)
T KOG0132|consen 499 S 499 (894)
T ss_pred h
Confidence 5
No 113
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=2.1e-07 Score=97.21 Aligned_cols=79 Identities=22% Similarity=0.426 Sum_probs=73.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..|+|||-.||.+..+.||..+|-.||.|.+.++ +..+++|+||.|.++.+|+.||.++||..|.=++|+|+.-+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 4699999999999999999999999999998774 78899999999999999999999999999999999999988
Q ss_pred CCCC
Q 003007 266 PKDN 269 (858)
Q Consensus 266 pk~~ 269 (858)
||+.
T Consensus 364 Pkda 367 (371)
T KOG0146|consen 364 PKDA 367 (371)
T ss_pred cccc
Confidence 8753
No 114
>smart00361 RRM_1 RNA recognition motif.
Probab=98.46 E-value=3.2e-07 Score=79.06 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=50.1
Q ss_pred HHHHHHHhh----cCCCEEEEE---e---C--CCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 206 DSELRALFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 206 eeeLr~lFs----~fG~I~sv~---~---~--~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
+++|+++|+ +||.|.++. + + +.++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678899998 999999884 2 2 678999999999999999999999999999999875
No 115
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.43 E-value=4.1e-07 Score=104.55 Aligned_cols=163 Identities=20% Similarity=0.350 Sum_probs=129.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcC-----------C-CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~f-----------G-~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
....+.++|+++|..++++++..+|..- | .+..+. ....+.|||++|.+.++|..|+. +++..+.|
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~-~n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g 249 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQ-LNLEKNFAFIEFRSISEATEAMA-LDGIIFEG 249 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeee-ecccccceeEEecCCCchhhhhc-ccchhhCC
Confidence 3456899999999999999999988843 3 355554 46688999999999999999987 78877778
Q ss_pred ccccccccCCCCC-------------------CCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCC
Q 003007 257 RKLDIHFSIPKDN-------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPH 312 (858)
Q Consensus 257 r~L~V~~a~pk~~-------------------~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~ 312 (858)
.++++.--..... ..........+||++||..+++++++++...||.++..+. ++.
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~ 329 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGN 329 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccc
Confidence 7766532111000 0001112357999999999999999999999999887653 467
Q ss_pred CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 313 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 313 srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
++||||.+|.+......|+..|||..+.+++|.|..+..+.
T Consensus 330 skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 330 SKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred ccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 89999999999999999999999999999999999887664
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=5.5e-07 Score=97.44 Aligned_cols=83 Identities=25% Similarity=0.456 Sum_probs=71.6
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC-Ccccccccccc
Q 003007 184 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIH 262 (858)
Q Consensus 184 ~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng-~~l~gr~L~V~ 262 (858)
..+..+...++|||++|-..++|.+|++.|.+||+|+++++. ..+++|||+|.+.++|+.|..++-. ..|.|++|.|.
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 455566778999999999999999999999999999999764 3567999999999999999876544 55789999999
Q ss_pred ccCCC
Q 003007 263 FSIPK 267 (858)
Q Consensus 263 ~a~pk 267 (858)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 99883
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=5.5e-07 Score=97.49 Aligned_cols=77 Identities=35% Similarity=0.510 Sum_probs=67.9
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEecCC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~L-nG~~i~Gr~I~V~~s~~ 351 (858)
+..-.+|||++|...+++.+|+++|.+||+|++|++... +++|||+|.++++|++|...+ |...|+|.+|+|.|+++
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 334569999999999999999999999999999998754 569999999999999988755 55678999999999988
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=8.6e-08 Score=113.30 Aligned_cols=139 Identities=14% Similarity=0.229 Sum_probs=117.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
.++||+||+..+.+++|...|..+|.+..+. ..++.+|+|+|.|..+++|.+|+.......+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------ 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------ 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------
Confidence 5899999999999999999999999877665 36778999999999999999999854433332
Q ss_pred CCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003007 268 DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (858)
Q Consensus 268 ~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (858)
...|+|.|+|+..|.++|+.++.++|.+++.++ .++.+|.++|.|.+..+|.+++..+.+..+.-+.
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 236999999999999999999999999999865 3667899999999999999999888877777677
Q ss_pred EEEEecCCC
Q 003007 344 IKLEPSRPG 352 (858)
Q Consensus 344 I~V~~s~~~ 352 (858)
+.|..+.|.
T Consensus 807 ~~v~vsnp~ 815 (881)
T KOG0128|consen 807 GEVQVSNPE 815 (881)
T ss_pred ccccccCCc
Confidence 777776553
No 119
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.32 E-value=2e-07 Score=95.20 Aligned_cols=139 Identities=21% Similarity=0.298 Sum_probs=111.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
...+||||.|+-..|+|+-|.++|-+-|.|..|.+ ..+.+ ||||.|.++-...-|+..++|..+.++.+.|++--
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34699999999999999999999999999999875 23344 99999999999999999999999999988876531
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (858)
-. ...- |+..++++.+...|+.-|.|..+++ .+..+.++|+.+....+.-.|+..-.+..+.-
T Consensus 86 G~--------shap-----ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GN--------SHAP-----LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CC--------Ccch-----hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 10 0111 5677899999999999999988876 34577899999988777777777665554433
Q ss_pred c
Q 003007 342 K 342 (858)
Q Consensus 342 r 342 (858)
+
T Consensus 153 ~ 153 (267)
T KOG4454|consen 153 K 153 (267)
T ss_pred C
Confidence 3
No 120
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=7.4e-07 Score=96.27 Aligned_cols=77 Identities=27% Similarity=0.426 Sum_probs=70.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
+...|||.-|++-+|++||.-||+.||.|++|.+ ++.+-.||||+|++.+++++|.-.|+...|+.++|.|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4568999999999999999999999999999965 56677799999999999999999999999999999999987
Q ss_pred CC
Q 003007 351 PG 352 (858)
Q Consensus 351 ~~ 352 (858)
.-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 54
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.26 E-value=1.1e-06 Score=95.84 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=128.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...+++|++++...+.+.++..++..+|.+..+. -...++|++.|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4578999999999999999999999999765544 25678999999999999999999865444555555444333
Q ss_pred CCCCCCCC------CCCCcccee-eeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHH
Q 003007 265 IPKDNPSD------KDLNQGTLV-VFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 332 (858)
Q Consensus 265 ~pk~~~~~------~~~~~~tLf-V~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~ 332 (858)
........ ......++| |.||++.+++++|+..|..+|.|..+++ ++..+++|+|+|.....+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 22211000 111223555 9999999999999999999999999986 45678999999999999999998
Q ss_pred HhCCCccCCceEEEEecCCCcc
Q 003007 333 SLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
. +...+.++.+.|+...+...
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred c-ccCcccCcccccccCCCCcc
Confidence 7 88899999999999877643
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.5e-06 Score=93.97 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=72.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..|...|||..|.+-+++++|.-+|++||.|.+|.+ ++.+..||||+|.+.+++++|.-+|++..|..+.|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 356799999999999999999999999999999874 777889999999999999999999999999999999999
Q ss_pred cCC
Q 003007 264 SIP 266 (858)
Q Consensus 264 a~p 266 (858)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 753
No 123
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.17 E-value=2.5e-06 Score=88.68 Aligned_cols=148 Identities=16% Similarity=0.224 Sum_probs=100.4
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE----------EEEecCccccccceEEeeecCccccCcccccccCC----CCc
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM----------ELEGEPQESLSMSMSKISISDSASGNGLLHYSVPN----GAG 179 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i----------~V~~d~~esa~~a~~~v~~~~~~~a~~~~~~~l~n----~v~ 179 (858)
|.+++|++|+....+.++..+|..+|.+ ||+|++.-.+.-++......+......+..+.... +..
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~ 80 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRP 80 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeecccccccccCCC
Confidence 4678999999999999999999999976 56666544444333322211111000000000000 000
Q ss_pred cc------cCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCc
Q 003007 180 TV------AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP 253 (858)
Q Consensus 180 ~~------sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~ 253 (858)
.. ...........+.|+|.+++..+.+.+|.+.|.++|.+..... ..+++||+|.+.++|.+|+..|++..
T Consensus 81 ~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 81 RGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred CCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchh
Confidence 00 0000112335578999999999999999999999999954432 78899999999999999999999999
Q ss_pred ccccccccccc
Q 003007 254 LRRRKLDIHFS 264 (858)
Q Consensus 254 l~gr~L~V~~a 264 (858)
+.++.|.+...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999999544
No 124
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.15 E-value=1.6e-06 Score=90.50 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=111.1
Q ss_pred EEEeCCCCCCCHHH-H--HHHhhcCCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 195 LFVRNINSNVEDSE-L--RALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 195 LfV~NLP~~vteee-L--r~lFs~fG~I~sv~----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
+++.++-..+..+- | ...|+.|-.+...+ ..++-++++|+.|.....-.++-..-+++.+...++++.-...-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 34444444444433 2 44555554433322 25667899999999888888777766777777666665433322
Q ss_pred CCC--CCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEE-----EeCCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 268 DNP--SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 268 ~~~--~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i-----rit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
..+ .+.+.++-.||.+.|..+++++-|-..|.+|-..... .-+++++||+||.|.+..++.+|++.|+|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 222 2234456789999999999999999999998643332 237889999999999999999999999999999
Q ss_pred CceEEEEecCC
Q 003007 341 GKRIKLEPSRP 351 (858)
Q Consensus 341 Gr~I~V~~s~~ 351 (858)
.+.|++.-+.-
T Consensus 259 srpiklRkS~w 269 (290)
T KOG0226|consen 259 SRPIKLRKSEW 269 (290)
T ss_pred cchhHhhhhhH
Confidence 99998865443
No 125
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.08 E-value=8.4e-06 Score=83.13 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=71.3
Q ss_pred CCccceeeeCCCCCCchhHHHHhhccc-CceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~f-G~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...+-+||..+|.-+-+.++...|.+| |.|..+|+ ||+++|||||+|++.+.|.-|-+.||+.-+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345689999999999999999999999 77777776 788999999999999999999999999999999999999
Q ss_pred cCCC
Q 003007 349 SRPG 352 (858)
Q Consensus 349 s~~~ 352 (858)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8776
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.07 E-value=5.4e-06 Score=93.99 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=67.4
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
.+|+|.+|...+.-.||+.+|++||+|+-.++ ++..+.|+||++.+.++|.+||..|+.+++.|+.|.|+-++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999988776 344577999999999999999999999999999999998765
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.00 E-value=1.4e-05 Score=90.80 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=68.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.-.++|||.+|...+...+|+.||++||+|.-.++ ++-.++|+||++.+.++|.+||..|+...|+|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999977653 4557889999999999999999999999999999999876
Q ss_pred C
Q 003007 265 I 265 (858)
Q Consensus 265 ~ 265 (858)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 4
No 128
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.98 E-value=1.8e-05 Score=81.31 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=65.2
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEE--EeCCCC----ccEEEEEEcCHHHHHHHHHHhCCCccC---CceEEEE
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALKSLNRSDIA---GKRIKLE 347 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i--rit~~s----rG~aFVeF~d~e~A~kAl~~LnG~~i~---Gr~I~V~ 347 (858)
-+||||.+||.++...||..+|..|-.-+.+ +.+.+. +-+|||.|.+..+|..|+++|||..++ +..|.|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4799999999999999999999998444443 444433 369999999999999999999999887 7899999
Q ss_pred ecCCCcc
Q 003007 348 PSRPGGA 354 (858)
Q Consensus 348 ~s~~~~~ 354 (858)
+++....
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 9887653
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=81.10 Aligned_cols=79 Identities=18% Similarity=0.364 Sum_probs=70.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcC-CCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQY-GDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~f-G~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
.......++|..+|.-+.+.++..+|.+| |.|+++++ +|.++|||||+|++.+.|+-|-+.||+..|.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34456789999999999999999999998 77777763 8899999999999999999999999999999999999
Q ss_pred cccCC
Q 003007 262 HFSIP 266 (858)
Q Consensus 262 ~~a~p 266 (858)
++-.|
T Consensus 125 ~vmpp 129 (214)
T KOG4208|consen 125 HVMPP 129 (214)
T ss_pred EEeCc
Confidence 98754
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.97 E-value=1e-06 Score=97.04 Aligned_cols=149 Identities=19% Similarity=0.356 Sum_probs=122.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCC-ccccccccccccCCCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~f--G~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~-~l~gr~L~V~~a~pk~~ 269 (858)
.+||++||.+.++..+|+.+|..- +--..+ --..||+||.+.|...|.+|++.++|+ .+.|+++.+.++.+++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f---l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF---LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce---eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 468999999999999999999743 111111 124699999999999999999999985 58899999999988765
Q ss_pred CCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC--CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 270 ~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~--srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
++ +.+-|.|+|+....+-|..+...||.|..|..+.. ..-..=|+|...+.+..||..|+|..+....++|.
T Consensus 79 rs------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~ 152 (584)
T KOG2193|consen 79 RS------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVG 152 (584)
T ss_pred Hh------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcc
Confidence 43 35899999999999999999999999999865321 22234578899999999999999999999998888
Q ss_pred ecC
Q 003007 348 PSR 350 (858)
Q Consensus 348 ~s~ 350 (858)
|--
T Consensus 153 YiP 155 (584)
T KOG2193|consen 153 YIP 155 (584)
T ss_pred cCc
Confidence 753
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=1.3e-05 Score=93.44 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=70.3
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC--------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit--------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (858)
+...++|||+||+++++++.|...|+.||.|..++|. ...+.+|||-|-++.||++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 3456789999999999999999999999999999872 22467999999999999999999999999999999
Q ss_pred EEecCC
Q 003007 346 LEPSRP 351 (858)
Q Consensus 346 V~~s~~ 351 (858)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999865
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.90 E-value=2.2e-05 Score=91.56 Aligned_cols=83 Identities=17% Similarity=0.353 Sum_probs=72.7
Q ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--------CCCcccEEEEEEcCHHHHHHHHHHhcCCccc
Q 003007 184 EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (858)
Q Consensus 184 ~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~--------~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~ 255 (858)
....+....++|||+||++.++++.|...|.+||+|.++++ ..+.+-|+||.|.+..+|++|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 33344556789999999999999999999999999999985 2345679999999999999999999999999
Q ss_pred cccccccccCC
Q 003007 256 RRKLDIHFSIP 266 (858)
Q Consensus 256 gr~L~V~~a~p 266 (858)
+..+++.|+++
T Consensus 246 ~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 EYEMKLGWGKA 256 (877)
T ss_pred eeeeeeccccc
Confidence 99999999843
No 133
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.88 E-value=9.5e-06 Score=82.72 Aligned_cols=90 Identities=20% Similarity=0.344 Sum_probs=60.6
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEee--ecc--cccceeEEEEEecCCcccHHHHHHHhcCCcccCCC
Q 003007 692 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP--IDF--KNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN 767 (858)
Q Consensus 692 d~rTTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Ylp--~df--~~~~n~gyaFin~~~~~~~~~f~~~f~g~~w~~~~ 767 (858)
..++.|.||++|..+|.+.+++.|+......++|-|.+ .+. -..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45789999999999999999998887666665555555 222 23445677999999999999999999999998654
Q ss_pred C-ccEEEEEeeeccc
Q 003007 768 S-EKVASLAYARIQG 781 (858)
Q Consensus 768 s-~k~~~v~~A~iQG 781 (858)
. .-++.|.||--|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 3 4889999998774
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.85 E-value=4.1e-05 Score=81.32 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|+|.|||..++++||+++|..||.++.+-+ .+.+.|.|=|.|...+||.+|++.+||..++|+.+++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3467999999999999999999999998888765 566788999999999999999999999999999999887665
Q ss_pred Cc
Q 003007 352 GG 353 (858)
Q Consensus 352 ~~ 353 (858)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 53
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.84 E-value=3.8e-05 Score=81.62 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
-..+|+|.|||+.|++++|++||+.||.+..+-+ .+.+.|.|-|.|...++|.+|++.+++..+.|+++.+....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3478999999999999999999999998887764 677889999999999999999999999999999988887643
No 136
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.83 E-value=0.00016 Score=78.81 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=100.8
Q ss_pred cCcceeeeccCCCCCChHHHHHHhcCCCcE---------EEE-ecCccccccceEEeeecCccccC---------ccccc
Q 003007 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---------ELE-GEPQESLSMSMSKISISDSASGN---------GLLHY 172 (858)
Q Consensus 112 ~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---------~V~-~d~~esa~~a~~~v~~~~~~~a~---------~~~~~ 172 (858)
.+-+.+||.+||.+++..+..++|+.+|.| .|. .....++-+|-+.+.+...+.+. .+.+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 356789999999999999999999999987 111 11122344444444443332211 11111
Q ss_pred ccC---------CC---Cccc----------------------cCCCCCCCCCCcEEEEeCCCC----CCC-------HH
Q 003007 173 SVP---------NG---AGTV----------------------AGEHPYGEHPSRTLFVRNINS----NVE-------DS 207 (858)
Q Consensus 173 ~l~---------n~---v~~~----------------------sg~~~~~~~~s~tLfV~NLP~----~vt-------ee 207 (858)
.+. .. ..+. ....+...+..++|.++|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 100 00 0000 001123344568999999832 222 35
Q ss_pred HHHHHhhcCCCEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 208 ELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 208 eLr~lFs~fG~I~sv~~-~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
+|++-.++||.|++|.+ .....|.+-|.|.+.++|+.||+.|+|..|.||.|......
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 66777899999999986 34678999999999999999999999999999999877653
No 137
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.77 E-value=0.00023 Score=78.18 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=104.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC-----CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~f-----G~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
+.+..+-.++||+..++.+|..+|.-. |.+......++..|.|.|.|.|.|.-+.|++. +...+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeecc
Confidence 445677789999999999999999832 22333334677889999999999999999985 666677888887665
Q ss_pred CCCCC------------CCCCCCCccceeeeCCCCCCchhHHHHhhccc----Cc---eEEEEe-CCCCccEEEEEEcCH
Q 003007 265 IPKDN------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAY----GE---VKEIRE-TPHKRHHKFIEFYDV 324 (858)
Q Consensus 265 ~pk~~------------~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~f----G~---I~~iri-t~~srG~aFVeF~d~ 324 (858)
...+- +--...++--|-+++||++.++.|+.++|.+- |. |..|+- .++..|-|||.|..+
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 43210 00011234457789999999999999999632 22 333333 566788999999999
Q ss_pred HHHHHHHHH
Q 003007 325 RAAEAALKS 333 (858)
Q Consensus 325 e~A~kAl~~ 333 (858)
++|+.||..
T Consensus 217 e~aq~aL~k 225 (508)
T KOG1365|consen 217 EDAQFALRK 225 (508)
T ss_pred HHHHHHHHH
Confidence 999999985
No 138
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00027 Score=80.69 Aligned_cols=150 Identities=20% Similarity=0.232 Sum_probs=104.3
Q ss_pred CCCCCCCChHHHhhcCcceeeeccCCCCCChHHHHHHhcCCCcEEEEecC-ccc----cccc---eEEeeecCccccCcc
Q 003007 98 IGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEP-QES----LSMS---MSKISISDSASGNGL 169 (858)
Q Consensus 98 I~nlLP~d~d~l~~~v~~el~V~~Lp~~~~E~el~~lFs~~G~i~V~~d~-~es----a~~a---~~~v~~~~~~~a~~~ 169 (858)
..+.++.. +.-...+..++||++||.+++|.++...|..||.+.|+-.. .++ ..++ ++++-|.++..+..+
T Consensus 244 ~~~~~~~~-~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 244 WSGSLPPR-GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred hccccCCC-CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 33455544 34455567999999999999999999999999999886652 111 2245 888887766443311
Q ss_pred c--------ccc--cCCCCcc---------------ccCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhh-cCCCEEEEE
Q 003007 170 L--------HYS--VPNGAGT---------------VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLY 223 (858)
Q Consensus 170 ~--------~~~--l~n~v~~---------------~sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs-~fG~I~sv~ 223 (858)
. .+. +.....+ ........-++.+||||+.||.-++.+||..+|+ -||.|..+-
T Consensus 323 l~aC~~~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaG 402 (520)
T KOG0129|consen 323 LSACSEGEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVG 402 (520)
T ss_pred HHHHhhcccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEE
Confidence 0 000 1000000 0111223345789999999999999999999999 799998775
Q ss_pred e-----CCCcccEEEEEEcCHHHHHHHHHH
Q 003007 224 T-----ACKHRGFVMISYYDIRAARTAMRA 248 (858)
Q Consensus 224 ~-----~~ksrG~aFV~F~d~e~A~~Al~~ 248 (858)
+ ..-.+|-|=|.|.+..+-.+||.+
T Consensus 403 IDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 403 IDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4 233779999999999999999974
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.62 E-value=6e-05 Score=85.97 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=60.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---C--CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~--~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+|||+|||.++++++|+++|..||+|+...+ . ++..+||||+|.+.++++.||.+ +-..+.+++|.|+--
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 356999999999999999999999999988663 2 34448999999999999999996 466677888888643
No 140
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.62 E-value=0.00021 Score=63.53 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=48.3
Q ss_pred cceeeeCCCCCCchh----HHHHhhccc-CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSVSNE----DLRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~vTee----dL~~~Fs~f-G~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
..|+|.|||.+.+.. .|++++.-+ |+|.+| . .+.|+|.|.+.+.|++|.+.|+|..+.|.+|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 469999999887754 467888888 466666 2 467999999999999999999999999999999997543
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.62 E-value=8e-05 Score=84.96 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=64.4
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.+|||+|||.++++++|+++|..||.|+..+|. .+...||||+|.+.++++.||.+ +-..+++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999988652 22237999999999999999996 467889999999987665
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 142
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.60 E-value=8.2e-05 Score=78.98 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=68.9
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
+.+....+||+|+++.+|.+++..+|+.||.|..+.+ .++.+||+||+|.+.+.+++|++ |+|..|.|+.|+|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3445678999999999999999999999999975543 56689999999999999999999 99999999999998
Q ss_pred ecCCC
Q 003007 348 PSRPG 352 (858)
Q Consensus 348 ~s~~~ 352 (858)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 86543
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.55 E-value=0.00029 Score=62.59 Aligned_cols=68 Identities=22% Similarity=0.406 Sum_probs=48.9
Q ss_pred cEEEEeCCCCCCCHHH----HHHHhhcCC-CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 193 RTLFVRNINSNVEDSE----LRALFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 193 ~tLfV~NLP~~vteee----Lr~lFs~fG-~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..|+|.|||.+.+... |+.|+..+| .|..| ..+.|+|.|.+++.|++|.+.|.|..+.|.+|.|+|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999998875 556777775 67665 35899999999999999999999999999999999973
No 144
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.49 E-value=0.0002 Score=85.98 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=114.7
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE-EEEecCc-cccccceEEeeecCccccC----cccccccCCCCccccCCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQ-ESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 187 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i-~V~~d~~-esa~~a~~~v~~~~~~~a~----~~~~~~l~n~v~~~sg~~~~ 187 (858)
.+.+++++|...+++.++..+|..+|-+ .|.++.. -.+..++.++.+.....+. .+-+..+.++..+.-...+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~- 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP- 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-
Confidence 4789999999999999999999999988 7777654 4455566666665443332 2222233333222222212
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccc--ccccccccC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 265 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~ 265 (858)
...+.+.++|++|...+....|...|..||.|+.|.. .+..-||+|.|.+...|+.|++.+.|..|.+ +.|.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4457789999999999999999999999999998853 4556799999999999999999999999985 678888875
Q ss_pred CC
Q 003007 266 PK 267 (858)
Q Consensus 266 pk 267 (858)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 43
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.38 E-value=0.00028 Score=74.17 Aligned_cols=75 Identities=20% Similarity=0.358 Sum_probs=65.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE-----EeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv-----~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...-.||.+.|-.+++++.|-..|.+|-..... +.+++++||+||.|.++.++..|+++++|..+..++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 345799999999999999999999998754332 258999999999999999999999999999999999998755
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.37 E-value=0.00072 Score=62.32 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=58.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccc----cccccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 261 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~f--G~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~----gr~L~V 261 (858)
+||.|+|||...|.++|.+++... |...-++ .+..+.|||||.|.+++.|.+-.+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988753 3333333 25568999999999999999999999998875 455667
Q ss_pred cccC
Q 003007 262 HFSI 265 (858)
Q Consensus 262 ~~a~ 265 (858)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.28 E-value=9.6e-05 Score=81.35 Aligned_cols=157 Identities=18% Similarity=0.197 Sum_probs=113.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCC--------CcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~--------ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..|-|.||.+.++.++++.||.-.|+|..+.+.+ .....|||.|.|...+..|.. |.+..+-++.|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 4899999999999999999999999999887422 345689999999999888866 7777766665544221
Q ss_pred C-------------------CCCCCCC------C---CC------------------------CccceeeeCCCCCCchh
Q 003007 265 I-------------------PKDNPSD------K---DL------------------------NQGTLVVFNLDPSVSNE 292 (858)
Q Consensus 265 ~-------------------pk~~~~~------~---~~------------------------~~~tLfV~NLp~~vTee 292 (858)
. |...+.+ . .+ -..|++|.+|...+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 0 0000000 0 00 01479999999999999
Q ss_pred HHHHhhcccCceEEEEeC-CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 293 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 293 dL~~~Fs~fG~I~~irit-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
++-+.|..+|.|...++. +...-+|-|+|........|++ ++|.++.-....+..-+|
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 999999999999988763 3344578899999999999988 467776544433333344
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.20 E-value=0.00019 Score=73.82 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=66.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCC----CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~----~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
.+.||||.|+...++|+-|.++|-+-|.|.+|.|.. +.+ ||||.|.++....-|++.|||..+.+..|+|++-.-
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 357999999999999999999999999999998732 233 999999999999999999999999999999887543
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.19 E-value=0.00072 Score=63.31 Aligned_cols=69 Identities=29% Similarity=0.463 Sum_probs=44.5
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC-----ccCCceEEEEe
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-----DIAGKRIKLEP 348 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~-----~i~Gr~I~V~~ 348 (858)
.|.|.+++..++.++|++.|+.||.|..|.+... ...|+|+|.+.++|++|+..+.-. .|.+..++++.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 4788999999999999999999999999998653 347999999999999999987533 55666665554
No 150
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.19 E-value=0.00063 Score=79.52 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=112.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-CCC---EEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC-
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQ-YGD---IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI- 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~-fG~---I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~- 265 (858)
..+.+-++..+.+.++.+++++|.. +-. |..-.+.+...|-++|.|....++++|++. +...+..|.+.+.-+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 4456667889999999999999973 322 222224455579999999999999999884 5555556655543211
Q ss_pred -----C------CCCCC-C-----------------C-----CCCccceeeeCCCCCCchhHHHHhhcccCceEE-EEeC
Q 003007 266 -----P------KDNPS-D-----------------K-----DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRET 310 (858)
Q Consensus 266 -----p------k~~~~-~-----------------~-----~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~-irit 310 (858)
+ +..+. . . ..-...|||+.||..+++.++-+.|..--.|++ |.++
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 0 00000 0 0 001247999999999999999999998777766 6653
Q ss_pred ----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 311 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 311 ----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
.+.++.|||+|..++++.+|+..-....+..+.|+|.-..
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 4457789999999999999988766667777889987543
No 151
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.15 E-value=0.00048 Score=73.24 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=68.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.+...+.+||+|+.+.+|.+++...|+.||.|..+.+ .+..+||+||+|.+.+.+++|++ |+|..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3456789999999999999999999999999975542 55689999999999999999999 99999999999988
Q ss_pred ccC
Q 003007 263 FSI 265 (858)
Q Consensus 263 ~a~ 265 (858)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 754
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.00 E-value=0.0008 Score=73.75 Aligned_cols=156 Identities=16% Similarity=0.217 Sum_probs=101.7
Q ss_pred cCcceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccC---cccc-ccc---------C
Q 003007 112 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---GLLH-YSV---------P 175 (858)
Q Consensus 112 ~v~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~---~~~~-~~l---------~ 175 (858)
+....++++++-..+++.++..++...|.. .+-+.......+++..+.|....... .+.. +.. .
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 446788999999999988777777777753 11111222334444444444222111 0000 000 0
Q ss_pred CCCcc-c-cCCCCCCCCCCcEEE-EeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHH
Q 003007 176 NGAGT-V-AGEHPYGEHPSRTLF-VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 247 (858)
Q Consensus 176 n~v~~-~-sg~~~~~~~~s~tLf-V~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~ 247 (858)
+..+. . .......-....++| |++|+..+++++|+..|..+|.|..+++ ++..+|||+|.|.+...+..|+.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 00000 0 000011122334555 9999999999999999999999999884 67789999999999999999998
Q ss_pred HhcCCccccccccccccCCCC
Q 003007 248 ALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 248 ~Lng~~l~gr~L~V~~a~pk~ 268 (858)
. +...+.++++.+.+..+..
T Consensus 246 ~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 246 D-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred c-ccCcccCcccccccCCCCc
Confidence 7 8888999999999886643
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.92 E-value=0.0027 Score=68.98 Aligned_cols=74 Identities=22% Similarity=0.430 Sum_probs=61.5
Q ss_pred cceeeeCCCCCCchhH----H--HHhhcccCceEEEEeCCCC------cc-E-EEEEEcCHHHHHHHHHHhCCCccCCce
Q 003007 278 GTLVVFNLDPSVSNED----L--RQIFGAYGEVKEIRETPHK------RH-H-KFIEFYDVRAAEAALKSLNRSDIAGKR 343 (858)
Q Consensus 278 ~tLfV~NLp~~vTeed----L--~~~Fs~fG~I~~irit~~s------rG-~-aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (858)
.-+||-+|++.+-.|+ | .++|++||.|+.|.+..+- .+ + .||+|.+.+||++||.+++|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999987776 2 3899999999999875431 12 3 399999999999999999999999999
Q ss_pred EEEEecCC
Q 003007 344 IKLEPSRP 351 (858)
Q Consensus 344 I~V~~s~~ 351 (858)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988654
No 154
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.91 E-value=0.00033 Score=83.79 Aligned_cols=177 Identities=17% Similarity=0.174 Sum_probs=127.9
Q ss_pred CcEEEEeCCCCCCCHH-HHHHHhhcCCCEEEEEeCC----Ccc-cEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 192 SRTLFVRNINSNVEDS-ELRALFEQYGDIRTLYTAC----KHR-GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 192 s~tLfV~NLP~~vtee-eLr~lFs~fG~I~sv~~~~----ksr-G~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
.+...+.++.+...+. ..+..|..+|.|+.|+... .+. .+.++.+....+++.|.. ..+.-+.++.+.|..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCC
Confidence 3567778888777776 5678899999999987422 122 278899999999999887 57777888888888776
Q ss_pred CCCCCCCCC------CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHh
Q 003007 266 PKDNPSDKD------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 266 pk~~~~~~~------~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~L 334 (858)
++....... ..-.++||+||+..+.+++|...|.++|.+..+++ .+.-||+|+|+|...++|.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 654221111 12258999999999999999999999998887754 3556899999999999999999865
Q ss_pred CCCccCCceEEEEecCCCcccchhhhccchhhcHHHHHHHHhhcCCCC
Q 003007 335 NRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPI 382 (858)
Q Consensus 335 nG~~i~Gr~I~V~~s~~~~~r~~~~~ql~~~~~~~~l~~~f~~~GsP~ 382 (858)
.++.+. +. ...+.+...+-+.+.++..+...|.+.
T Consensus 730 d~~~~g-K~------------~v~i~g~pf~gt~e~~k~l~~~~gn~~ 764 (881)
T KOG0128|consen 730 DSCFFG-KI------------SVAISGPPFQGTKEELKSLASKTGNVT 764 (881)
T ss_pred hhhhhh-hh------------hhheeCCCCCCchHHHHhhccccCCcc
Confidence 555554 21 123344444455666666666665443
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.45 E-value=0.0057 Score=56.78 Aligned_cols=72 Identities=21% Similarity=0.365 Sum_probs=52.3
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEE------------eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce-
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR- 343 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~ir------------it~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~- 343 (858)
..-|.|.+.|+.. ...+.+.|++||+|.+.. -.+...++--|+|+++.+|++||+ -||..+.|..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 4468999999884 466788999999999885 123346789999999999999998 4999999864
Q ss_pred EEEEecC
Q 003007 344 IKLEPSR 350 (858)
Q Consensus 344 I~V~~s~ 350 (858)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4467764
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.42 E-value=0.0028 Score=70.61 Aligned_cols=100 Identities=26% Similarity=0.361 Sum_probs=81.1
Q ss_pred ceeeeCCCCCCchhHHHHhhccc--CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC-ccCCceEEEEecCCCccc
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-DIAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~f--G~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~-~i~Gr~I~V~~s~~~~~r 355 (858)
.||++||.+.++..||+.+|... +.-...- -..||+||.+-|..-|.+|++.++|+ ++.|++++|+.+-++..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl---~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee---eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 69999999999999999999753 1111111 14689999999999999999999996 789999999999887654
Q ss_pred --chhhhccchhhcHHHHHHHHhhcCCC
Q 003007 356 --RNLMLQLNQELEQDESRILQHQVGSP 381 (858)
Q Consensus 356 --~~~~~ql~~~~~~~~l~~~f~~~GsP 381 (858)
+..+++..+++..+-+..+..+||.+
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 44667788888888888888888866
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.34 E-value=0.0047 Score=69.23 Aligned_cols=68 Identities=32% Similarity=0.450 Sum_probs=56.4
Q ss_pred CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC------------------CccEEEEEEcCHHHHHHHHHH
Q 003007 272 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALKS 333 (858)
Q Consensus 272 ~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~------------------srG~aFVeF~d~e~A~kAl~~ 333 (858)
.+.....+|++.|||.+-.-+-|.+||+.+|.|+.|||-.. .+-+|+|+|+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34456789999999999999999999999999999997321 144799999999999999998
Q ss_pred hCCCcc
Q 003007 334 LNRSDI 339 (858)
Q Consensus 334 LnG~~i 339 (858)
|+-...
T Consensus 306 ~~~e~~ 311 (484)
T KOG1855|consen 306 LNPEQN 311 (484)
T ss_pred hchhhh
Confidence 864433
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.30 E-value=0.0051 Score=65.03 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEE----eCCCCccE
Q 003007 241 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR----ETPHKRHH 316 (858)
Q Consensus 241 ~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~ir----it~~srG~ 316 (858)
-|+.|.++|.+....++.++|.|+.. +.|||.||..-++.|.|.+.|+.||.|.... ..++..+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 47778888999999999999999842 4699999999999999999999999886543 34556678
Q ss_pred EEEEEcCHHHHHHHHHHhCCC
Q 003007 317 KFIEFYDVRAAEAALKSLNRS 337 (858)
Q Consensus 317 aFVeF~d~e~A~kAl~~LnG~ 337 (858)
++|+|...-.|.+|++.++-.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred chhhhhcchhHHHHHHHhccC
Confidence 999999999999999987533
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.29 E-value=0.0072 Score=49.58 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=42.6
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHH
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 331 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl 331 (858)
+.|-|.+.+.+..+. +...|..||+|..+.+. ......+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 357888888776644 55588899999999986 34578999999999999995
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.13 E-value=0.0083 Score=65.30 Aligned_cols=87 Identities=25% Similarity=0.340 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHH----H--HHHhhcCCCEEEEEeCCCc------ccE--EEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 191 PSRTLFVRNINSNVEDSE----L--RALFEQYGDIRTLYTACKH------RGF--VMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteee----L--r~lFs~fG~I~sv~~~~ks------rG~--aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
...-+||-+||+.+-.|+ | .++|.+||.|..+.+..+. .+. .||.|.+.++|.+||.+.+|..+.|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456789999999998887 2 2799999999998753321 122 4999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCccceeeeCCC
Q 003007 257 RKLDIHFSIPKDNPSDKDLNQGTLVVFNLD 286 (858)
Q Consensus 257 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp 286 (858)
|-|+..|...+ -++-|++|++
T Consensus 193 r~lkatYGTTK---------YCtsYLRn~~ 213 (480)
T COG5175 193 RVLKATYGTTK---------YCTSYLRNAV 213 (480)
T ss_pred ceEeeecCchH---------HHHHHHcCCC
Confidence 99999887532 2456666654
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.00 E-value=0.0059 Score=67.39 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=68.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEE-------------eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~ir-------------it~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (858)
...++||.+|+..+++++|.+.|.++|.|+.=+ ++...++-|.|.|+|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 346899999999999999999999999886532 3566789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003007 343 RIKLEPSRPGG 353 (858)
Q Consensus 343 ~I~V~~s~~~~ 353 (858)
.|+|.++....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887654
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.81 E-value=0.022 Score=46.71 Aligned_cols=52 Identities=15% Similarity=0.404 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHH
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 246 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al 246 (858)
+.|-|.+.+++..+. ++..|..||+|..+... ...-+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 567888888777655 45588899999998764 45678999999999999985
No 163
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.78 E-value=0.025 Score=53.04 Aligned_cols=59 Identities=14% Similarity=0.247 Sum_probs=39.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 252 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~ 252 (858)
+.|.|.+++..++-++|++.|++||+|..|.. .+....|+|.|.+.+.|++|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~-~~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDF-SRGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEe-cCCCCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999998874 234558999999999999999977544
No 164
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=95.72 E-value=0.0054 Score=68.36 Aligned_cols=74 Identities=19% Similarity=0.380 Sum_probs=60.6
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEee-ecccccc-eeEEEEEecCCcccHHHHHHHhcCCcccCC
Q 003007 692 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP-IDFKNKC-NVGYAFINMLSPLHIIPFYEAFNGKKWEKF 766 (858)
Q Consensus 692 d~rTTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Ylp-~df~~~~-n~gyaFin~~~~~~~~~f~~~f~g~~w~~~ 766 (858)
+....|.||++|+++|...|+..||- +...+.|-|+- -|+.... -.+.|||||..+.++..|...|+|+.+=.-
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 34567999999999999999999999 77888888765 5544332 255699999999999999999999877543
No 165
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.50 E-value=0.026 Score=66.63 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=60.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEE----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIR-TLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~-sv~----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
+.|-+.|+|.+++-+||.++|..|-.+- +|. ..+.-.|-|+|-|++.++|.+|+..|+++.|..+++++.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 4888999999999999999999995432 121 366778899999999999999999999999999988765
No 166
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.48 E-value=0.0092 Score=63.14 Aligned_cols=68 Identities=21% Similarity=0.408 Sum_probs=58.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCC-------------Cccc----EEEEEEcCHHHHHHHHHHhcCCc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC-------------KHRG----FVMISYYDIRAARTAMRALQNKP 253 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~-------------ksrG----~aFV~F~d~e~A~~Al~~Lng~~ 253 (858)
....||+.+||+.+...-||++|++||+|.+|++.. .+.. -|.|+|.+...|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 457899999999999999999999999999998522 1222 27899999999999999999999
Q ss_pred ccccc
Q 003007 254 LRRRK 258 (858)
Q Consensus 254 l~gr~ 258 (858)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.48 E-value=0.0069 Score=64.06 Aligned_cols=68 Identities=29% Similarity=0.523 Sum_probs=58.5
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC-------------Ccc----EEEEEEcCHHHHHHHHHHhCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-------------KRH----HKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~-------------srG----~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
..+.||+++||+.+....|++||+.||.|-.|.+.+. +.. -|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999866322 111 38999999999999999999999
Q ss_pred cCCce
Q 003007 339 IAGKR 343 (858)
Q Consensus 339 i~Gr~ 343 (858)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.029 Score=64.98 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=57.2
Q ss_pred CccceeeeCCCCCC--c----hhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC-CceE
Q 003007 276 NQGTLVVFNLDPSV--S----NEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRI 344 (858)
Q Consensus 276 ~~~tLfV~NLp~~v--T----eedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I 344 (858)
-+..++|-|+|.-- . ..-|.++|+++|+|....+ .+..+||.|++|.+.++|+.|++.|||+.++ .++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 34578999988421 1 3346689999999988764 3568999999999999999999999999886 5777
Q ss_pred EEE
Q 003007 345 KLE 347 (858)
Q Consensus 345 ~V~ 347 (858)
.|.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.44 E-value=0.015 Score=65.35 Aligned_cols=74 Identities=24% Similarity=0.385 Sum_probs=59.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCC------------------cccEEEEEEcCHHHHHHHHHHh
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------------HRGFVMISYYDIRAARTAMRAL 249 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~k------------------srG~aFV~F~d~e~A~~Al~~L 249 (858)
.+-++++|.+.|||.+-.-+-|.++|..+|.|..|++... .+-+|+|+|...+.|++|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458899999999999999999999999999999985211 3568999999999999999987
Q ss_pred cCCccccccccc
Q 003007 250 QNKPLRRRKLDI 261 (858)
Q Consensus 250 ng~~l~gr~L~V 261 (858)
+...-+..-|+|
T Consensus 307 ~~e~~wr~glkv 318 (484)
T KOG1855|consen 307 NPEQNWRMGLKV 318 (484)
T ss_pred chhhhhhhcchh
Confidence 654443333333
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.14 E-value=0.021 Score=63.11 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=68.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-------------eCCCcccEEEEEEcCHHHHHHHHHHhcCCccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-------------~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~ 255 (858)
.....+|||-+||..+++.+|.++|.++|.|..-+ .+.+.+|-|.|.|.|...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34557999999999999999999999999886533 36778999999999999999999999999999
Q ss_pred cccccccccCC
Q 003007 256 RRKLDIHFSIP 266 (858)
Q Consensus 256 gr~L~V~~a~p 266 (858)
+.+|+|..+..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999887753
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.97 E-value=0.066 Score=52.83 Aligned_cols=75 Identities=31% Similarity=0.433 Sum_probs=54.1
Q ss_pred CCCccceeeeCCCC-----CCch----hHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003007 274 DLNQGTLVVFNLDP-----SVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (858)
Q Consensus 274 ~~~~~tLfV~NLp~-----~vTe----edL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (858)
...++|+.|.=+.+ ..-. .+|.+.|..||+|.=+|+.. +.-+|+|.+-+.|.+|+. |+|.++.|+.|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 34567887775551 1222 36888999999999999875 457999999999999997 89999999999
Q ss_pred EEEecCCC
Q 003007 345 KLEPSRPG 352 (858)
Q Consensus 345 ~V~~s~~~ 352 (858)
+|+...+.
T Consensus 100 ~i~LKtpd 107 (146)
T PF08952_consen 100 KIRLKTPD 107 (146)
T ss_dssp EEEE----
T ss_pred EEEeCCcc
Confidence 99987664
No 172
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.59 E-value=0.21 Score=47.27 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=66.6
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccE
Q 003007 692 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKV 771 (858)
Q Consensus 692 d~rTTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~g~~w~~~~s~k~ 771 (858)
..+|+|-+=-+|+.++..+++..+-+.+.....-+.+--|.. -|.-=+-|-|.+.++|..||+.|||++++..-. -+
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~ 86 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ET 86 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-ce
Confidence 344666666899999988777666677777777666666643 466668999999999999999999999988765 45
Q ss_pred EEEEe-eecc
Q 003007 772 ASLAY-ARIQ 780 (858)
Q Consensus 772 ~~v~~-A~iQ 780 (858)
|.|.| .+||
T Consensus 87 ChvvfV~~Ve 96 (110)
T PF07576_consen 87 CHVVFVKSVE 96 (110)
T ss_pred eEEEEEEEEE
Confidence 99999 4555
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.50 E-value=0.017 Score=61.22 Aligned_cols=62 Identities=31% Similarity=0.399 Sum_probs=50.8
Q ss_pred hHHHHhhc-ccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 292 EDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 292 edL~~~Fs-~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
|||...|+ +||+|+++.+- .+-.|-++|.|...++|++|+..||+..+.|++|..+++.-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555556 89999998653 2346779999999999999999999999999999999875544
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.30 E-value=0.14 Score=58.28 Aligned_cols=81 Identities=30% Similarity=0.349 Sum_probs=70.7
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcceEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003007 694 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 773 (858)
Q Consensus 694 rTTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gyaFin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 773 (858)
-|+|-|=-||+.+|.-+|+..+.....---|+--++ | .--|.--+-|-|.+..+|..||+.|||+.++..-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 588999999999999999999998888888888888 3 445555689999999999999999999999887766 999
Q ss_pred EEeee
Q 003007 774 LAYAR 778 (858)
Q Consensus 774 v~~A~ 778 (858)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.29 E-value=0.085 Score=49.08 Aligned_cols=72 Identities=11% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE------------eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccc-
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~------------~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr- 257 (858)
..+-|.|=+.|+. ....+.+.|++||+|.+.. -......+..|.|.++.+|++||++ ||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4566888888887 5677889999999998875 1234566899999999999999994 99988875
Q ss_pred ccccccc
Q 003007 258 KLDIHFS 264 (858)
Q Consensus 258 ~L~V~~a 264 (858)
-+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3445554
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.94 E-value=0.098 Score=56.43 Aligned_cols=61 Identities=20% Similarity=0.234 Sum_probs=49.9
Q ss_pred hhHHHHhhcccCceEEEEeCCC------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 291 NEDLRQIFGAYGEVKEIRETPH------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 291 eedL~~~Fs~fG~I~~irit~~------srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
++++++.+++||.|..|.|... ..--.||+|...++|.+|+-.|||+.|+|+.+...|-.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5678899999999998865211 112379999999999999999999999999998777543
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=93.79 E-value=0.12 Score=60.15 Aligned_cols=70 Identities=20% Similarity=0.388 Sum_probs=54.3
Q ss_pred CcEEEEeCCCCCCCH------HHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc-ccccc
Q 003007 192 SRTLFVRNINSNVED------SELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLD 260 (858)
Q Consensus 192 s~tLfV~NLP~~vte------eeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~-gr~L~ 260 (858)
...|+|.|+|.--.. .-|..+|+++|+|..+.. .+..+||.|++|.+.++|+.|++.|+|..|. ..++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 467788888743222 235689999999988773 5679999999999999999999999998875 34444
Q ss_pred c
Q 003007 261 I 261 (858)
Q Consensus 261 V 261 (858)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 178
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.27 E-value=0.039 Score=58.66 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=48.2
Q ss_pred HHHHHHhh-cCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 207 SELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 207 eeLr~lFs-~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
++|...|+ +||+|+.+++ ...-.|-++|.|...++|++|+..|++..+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34555555 8999998853 2345688999999999999999999999999999998876
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.81 E-value=0.39 Score=47.16 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=57.7
Q ss_pred CCCccceeeeCCCCCC-chhH---HHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 274 DLNQGTLVVFNLDPSV-SNED---LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~v-Teed---L~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
+.+-.||+|.=|...+ ..+| +.+..+.||.|.+|...| +.-|.|.|.|..+|-+|+.+++. ...|..+.+.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4456789997666655 2344 445667899999999876 45799999999999999999865 666888888885
Q ss_pred CC
Q 003007 350 RP 351 (858)
Q Consensus 350 ~~ 351 (858)
.+
T Consensus 160 qr 161 (166)
T PF15023_consen 160 QR 161 (166)
T ss_pred cc
Confidence 43
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=91.37 E-value=0.64 Score=41.78 Aligned_cols=53 Identities=13% Similarity=0.292 Sum_probs=41.4
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
..+|. .|..+...||.++|++||.|.-..+.. .-|||...+++.|..|++.+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 45555 899999999999999999987666653 359999999999999999886
No 181
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.70 E-value=0.67 Score=54.07 Aligned_cols=71 Identities=17% Similarity=0.222 Sum_probs=55.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhc--CCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC--Ccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIH 262 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~--fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng--~~l~gr~L~V~ 262 (858)
+..+.|+++-||..+..|+++.||+. +-++.+|.-.- +.+ =||+|++..||+.|.+.|.. +.|.|++|...
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~-N~n-WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH-NDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee-cCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 44578889999999999999999984 67788875322 222 47999999999999998865 45778877654
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.03 E-value=0.52 Score=51.08 Aligned_cols=58 Identities=16% Similarity=0.252 Sum_probs=47.9
Q ss_pred HHHHHHhhcCCCEEEEEeC-----CCc-ccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 207 SELRALFEQYGDIRTLYTA-----CKH-RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 207 eeLr~lFs~fG~I~sv~~~-----~ks-rG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
+++++.+++||.|..|.+. ... .--.||+|...++|.+|+..|+|..|.|+.+...|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4778899999999988741 112 234899999999999999999999999999887764
No 183
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.99 E-value=0.38 Score=55.12 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=57.5
Q ss_pred eeeeCCCCCC-chhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 280 LVVFNLDPSV-SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 280 LfV~NLp~~v-TeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
|-+.-.++.+ |-++|...|.+||+|..|.+.-. --.|.|+|.+..+|-+|-. ..+..|+++-|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 3333344444 57899999999999999987433 4579999999999977766 57999999999999998865
No 184
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.95 E-value=0.28 Score=54.03 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=57.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG--~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
..-.+||+||-|.+|+++|.+.....| .+..++ ..++++|||+|-..+..+.++.++.|-.+.|+|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 346899999999999999988777666 233322 57899999999999999999999988888888875333
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.61 E-value=1.2 Score=37.84 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=41.7
Q ss_pred ccceeeeCCCCCCchhHHHHhhccc----CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHh
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~f----G~I~~irit~~srG~aFVeF~d~e~A~kAl~~L 334 (858)
...|+|.+++ +++.++|+.+|..| + ...|...... -|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 3479999986 58889999999999 4 3445433222 3789999999999999875
No 186
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.49 E-value=1.2 Score=48.74 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=55.4
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce-EEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-IKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~-I~V~~s~~ 351 (858)
+.=+.|.+.++.-. .-|..+|++||+|.+..-. ....+-.|+|..+-+|++||.. ||+.|+|.. |-|+.+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 44577888876544 4677899999999887654 5667999999999999999985 899998854 44555433
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.34 E-value=1.2 Score=43.83 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=57.8
Q ss_pred CCCCCCcEEEEeCCCCCCCH-HHHH---HHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVED-SELR---ALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vte-eeLr---~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
..+.+-.||.|+=|..++.. +||+ ..++.||+|.+|...| +--|.|.|.|..+|-+|+.+++. ..-|..+++.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 34567789999887777654 3444 5567899999986544 56799999999999999998776 5567777777
Q ss_pred ccC
Q 003007 263 FSI 265 (858)
Q Consensus 263 ~a~ 265 (858)
|..
T Consensus 158 Wqq 160 (166)
T PF15023_consen 158 WQQ 160 (166)
T ss_pred ccc
Confidence 753
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.16 E-value=0.64 Score=48.00 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=46.2
Q ss_pred chhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEecCCCc
Q 003007 290 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 290 TeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln--G~~i~Gr~I~V~~s~~~~ 353 (858)
..+.|+++|..|+.+......+.- +-..|.|.+.++|.+|...|+ +..+.|..++|-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 357899999999998888765433 348999999999999999999 999999999999986554
No 189
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=89.01 E-value=0.27 Score=57.57 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=61.6
Q ss_pred ccceeeeCCCCCCchhHHHHhhcc-cCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCcc---CCceEEEEecCCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIKLEPSRPG 352 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~-fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i---~Gr~I~V~~s~~~ 352 (858)
...|+|.||-..+|.-+|+.++.+ .|.|.+..+ .+-+.+|||.|.+.++|.+.+.+|+|... +++.|.+.|....
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 357999999999999999999994 566666644 33467899999999999999999999754 3588988887654
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 523 e 523 (718)
T KOG2416|consen 523 E 523 (718)
T ss_pred H
Confidence 3
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.01 E-value=2.3 Score=49.84 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=54.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcc--cCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGA--YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKL 346 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~--fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V 346 (858)
+.+.+.|+-|+.++-.|+++.+|.. +-++++|...-+ .--||+|++..||+.|.+.|.- ++|.||.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3467888999999999999999984 678888887432 2379999999999999998863 4677776643
No 191
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=88.19 E-value=0.39 Score=52.96 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=59.1
Q ss_pred cceeeeCCCCCCchhHHHHhhcccC--ceEEE-----EeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG--~I~~i-----rit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
-++||+||-+-+|++||.+.....| .|.++ |..+.++|||+|-..+..+.++.++.|-.++|.|..-.|...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4799999999999999998887766 33344 346889999999999999999999999999999976555443
No 192
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=87.63 E-value=1.1 Score=44.42 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=51.6
Q ss_pred CCCcEEEEeCCC-----CCCCHH----HHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 190 HPSRTLFVRNIN-----SNVEDS----ELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 190 ~~s~tLfV~NLP-----~~vtee----eLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
.+..||.|.=+. ...-++ +|.+.|..||+|.-++. ..+.-+|.|.+-+.|-+|+. ++|..+.|+.|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRf---v~~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRF---VGDTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEE---ETTCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEE---eCCeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 356777776555 122233 67788999999887764 23578999999999999998 899999999999
Q ss_pred ccccCC
Q 003007 261 IHFSIP 266 (858)
Q Consensus 261 V~~a~p 266 (858)
|+.-.|
T Consensus 101 i~LKtp 106 (146)
T PF08952_consen 101 IRLKTP 106 (146)
T ss_dssp EEE---
T ss_pred EEeCCc
Confidence 986543
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.21 E-value=2.8 Score=37.85 Aligned_cols=55 Identities=15% Similarity=0.325 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng 251 (858)
...+|. .|..+...||.++|+.||.|.---+ ...-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi---~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI---NDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE---CTTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE---cCCcEEEEeecHHHHHHHHHHhcc
Confidence 556666 9999999999999999999875444 445699999999999999998764
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=87.04 E-value=0.49 Score=55.59 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=55.9
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcc
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~-fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l 254 (858)
|.....+..|+|.||-.-.|.-+|+.|+.+ .|.|.... ..+-+..|||.|.+.++|.....+|+|..+
T Consensus 438 PsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W-mDkIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW-MDKIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCCccceEeeecccccchHHHHHHHHhhccCchHHHH-HHHhhcceeEecccHHHHHHHHHHHhcccc
Confidence 345667899999999999999999999995 55665542 345677899999999999999999997554
No 195
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=86.53 E-value=0.71 Score=51.82 Aligned_cols=70 Identities=23% Similarity=0.545 Sum_probs=56.3
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeCCC--------CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~--------srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
+.|.|.||.+.+|.++++.+|.-.|+|.++++.+. ..-.|||.|.|...+..|.. |..+.+-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 47899999999999999999999999999987553 23479999999999888876 555555566665543
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.21 E-value=0.35 Score=53.44 Aligned_cols=75 Identities=16% Similarity=0.340 Sum_probs=59.0
Q ss_pred cceeeeCCCCCCchhHH-H--HhhcccCceEEEEeCCCC--------ccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003007 278 GTLVVFNLDPSVSNEDL-R--QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL-~--~~Fs~fG~I~~irit~~s--------rG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (858)
.-+||-+|+..+..+++ + +.|.+||.|.+|.+.... .--++|+|...++|..||...+|...+|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45788888877754444 3 689999999999774421 113899999999999999999999999999888
Q ss_pred EecCCC
Q 003007 347 EPSRPG 352 (858)
Q Consensus 347 ~~s~~~ 352 (858)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=82.74 E-value=1.2 Score=45.57 Aligned_cols=77 Identities=8% Similarity=0.056 Sum_probs=49.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhc-CCCE---EEEE--e-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccc-
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQ-YGDI---RTLY--T-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~-fG~I---~sv~--~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr- 257 (858)
....+|.|++||+.+|++++.+.+.. +++- ..+. . ....-.-|||.|.+.+++..-...++|..|...
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34579999999999999999997776 6665 3332 1 111224599999999999999999999887543
Q ss_pred ----cccccccCC
Q 003007 258 ----KLDIHFSIP 266 (858)
Q Consensus 258 ----~L~V~~a~p 266 (858)
+..|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 344666643
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=80.33 E-value=7.8 Score=33.05 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=40.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcC----CCEEEEE-eCCCcccEEEEEEcCHHHHHHHHHHh
Q 003007 193 RTLFVRNINSNVEDSELRALFEQY----GDIRTLY-TACKHRGFVMISYYDIRAARTAMRAL 249 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~f----G~I~sv~-~~~ksrG~aFV~F~d~e~A~~Al~~L 249 (858)
.+|.|+++. +++.++|+.+|..| +.. +|. +. ---|=|-|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWId---DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWID---DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEec---CCcEEEEECCHHHHHHHHHcC
Confidence 579999985 68889999999999 433 232 22 223778999999999999865
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.09 E-value=1.2 Score=49.45 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=59.8
Q ss_pred CcEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEeCCC------cc--cEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 192 SRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTACK------HR--GFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr---~lFs~fG~I~sv~~~~k------sr--G~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
..-+||-+|+..+.++++. +.|.+||.|..|.+... .. .-++|.|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888898887666554 58889999999874321 11 2389999999999999999999999999988
Q ss_pred ccccCCC
Q 003007 261 IHFSIPK 267 (858)
Q Consensus 261 V~~a~pk 267 (858)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887554
No 200
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=78.75 E-value=2.2 Score=45.69 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=52.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNK 252 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~ 252 (858)
..|+|.||..-+.-+.|..-|+.||+|.+.. ..++..+-++|.|...-.|.+|++.+.-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 7899999999999999999999999987643 35677788999999999999999987443
No 201
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=76.63 E-value=2.8 Score=43.34 Aligned_cols=61 Identities=20% Similarity=0.301 Sum_probs=44.6
Q ss_pred CHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc--CCccccccccccccCC
Q 003007 205 EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIP 266 (858)
Q Consensus 205 teeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Ln--g~~l~gr~L~V~~a~p 266 (858)
..+.|+++|..|+.+..+... ++-+=..|.|.+.++|.+|...|+ +..+.|..+++.|+.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 347899999999998887643 344558899999999999999999 8999999999999844
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.21 E-value=4 Score=44.70 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=47.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr 257 (858)
.=|-|-+.|+.- -..|..+|++||+|.... +.....+-+|.|....+|++||.+ +|+.|.+.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv-~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHV-TPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeee-cCCCCceEEEEecchhHHHHhhhh-cCeeeccc
Confidence 345555666553 346778999999999884 557777999999999999999984 77776653
No 203
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=74.15 E-value=4.4 Score=39.61 Aligned_cols=104 Identities=16% Similarity=0.139 Sum_probs=71.1
Q ss_pred CCHHHHHHHhh----cCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCC--Cc
Q 003007 204 VEDSELRALFE----QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDL--NQ 277 (858)
Q Consensus 204 vteeeLr~lFs----~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~--~~ 277 (858)
.+-..|...+. ..|.+.-. .-..++..++|.+.+++++++. .....+.+..+.++.-.|...+..... ..
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~---~l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~ 104 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIR---DLGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIP 104 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEE---EeCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccc
Confidence 44555554444 44544433 3367999999999999999987 344566777777766555444333222 12
Q ss_pred cceeeeCCCCC-CchhHHHHhhcccCceEEEEeCC
Q 003007 278 GTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETP 311 (858)
Q Consensus 278 ~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~irit~ 311 (858)
--+-|.|||.. .+++-|+++-+.+|++.++....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 23777899987 58889999999999999998743
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=73.90 E-value=2.2 Score=52.24 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=60.5
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccC--CceEEEEecCCC
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPG 352 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~--Gr~I~V~~s~~~ 352 (858)
+.++.|..-..+-.-|..+|+.||.|++++... .-..+.|+|...+.|..|+.+|+|+++. |-+.+|.+++.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 466667777788889999999999999998632 2347999999999999999999999764 778888888764
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=73.26 E-value=2.9 Score=50.05 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=61.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...++||+|+-..+.++-++.+...+|.|.++.... |||.+|.++..+.+|+..|.-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345899999999999999999999999999887643 999999999999999999998899888777654
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.52 E-value=15 Score=32.07 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=35.7
Q ss_pred CCCchhHHHHhhcccC-----ceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 287 PSVSNEDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 287 ~~vTeedL~~~Fs~fG-----~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
..++..+|..++...+ .|-.|++. ..|.||+-.. +.|.+++..|++..+.|++|+|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3567778888877654 45567774 4589999875 4889999999999999999999864
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=69.08 E-value=37 Score=32.28 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=47.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG-~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
....+.+...|.-++.++|..+.+.+- .|..+++ ...++=.+++.|.+.++|++-.+.+||+.+..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345555666666677777877766654 3445543 23355579999999999999999999998853
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=66.52 E-value=4.8 Score=36.71 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=43.5
Q ss_pred EEEEEcCHHHHHHHHHHhcC-CccccccccccccCCCCC-----CCCCCCCccceeeeCCCCCCchhHHHHhhc
Q 003007 232 VMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPKDN-----PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG 299 (858)
Q Consensus 232 aFV~F~d~e~A~~Al~~Lng-~~l~gr~L~V~~a~pk~~-----~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs 299 (858)
|+|+|.+..-|++-++.-.. ..+.+..+.|.-..-... .....+..++|.|.|||..+.+|+|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999998874222 223444444443211000 011234567899999999999999997653
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=65.23 E-value=16 Score=31.52 Aligned_cols=55 Identities=22% Similarity=0.381 Sum_probs=44.4
Q ss_pred CCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003007 288 SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (858)
Q Consensus 288 ~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (858)
.++-++++..+..|+- ..|+. ...| =||.|.+.++|+++.+..+|+.+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999974 34443 3345 489999999999999999999988877765
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=64.79 E-value=3.5 Score=47.60 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=62.0
Q ss_pred CCCCCcEEEEeCCCCCCC-HHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 188 GEHPSRTLFVRNINSNVE-DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vt-eeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
.....+.|-+.-+|.... -++|...|.+||+|..|.+... --.|.|+|.+..+|-+|-. ..+..|.++.|+|-|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344556777777777754 4789999999999999876433 4569999999999977766 589999999999999865
Q ss_pred C
Q 003007 267 K 267 (858)
Q Consensus 267 k 267 (858)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=63.50 E-value=17 Score=31.34 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 202 SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 202 ~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
..++-++++..+..|+-.. |.. ...| =||-|.+.++|+++....++..+....|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~-I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR-IRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcce-EEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3578899999999997433 221 2334 378999999999999999998887666543
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=62.55 E-value=3.9 Score=50.18 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=60.4
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccc--cccccccccCCC
Q 003007 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPK 267 (858)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~pk 267 (858)
+.++-|.+-..+..-|..+|.+||.|.+.+. -+.-..|.|+|...+.|..|+.+|+|+.+. |-+.+|.++++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 4455666778888999999999999998863 345567999999999999999999998864 788888888654
No 213
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.60 E-value=13 Score=38.28 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=50.6
Q ss_pred ceeeeCCCCCC-c----hhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEEEecCCC
Q 003007 279 TLVVFNLDPSV-S----NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 352 (858)
Q Consensus 279 tLfV~NLp~~v-T----eedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr-~I~V~~s~~~ 352 (858)
++++.+++..+ + ....+.+|.+|-+....++. ++.+..-|.|.+.+.|..|...+++..+.|+ .+++-++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 46666666544 2 23344566555443333332 2344678899999999999999999999998 8888888776
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=53.48 E-value=9.2 Score=46.06 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=59.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.+..++||+||-..+.++-++.+...+|-|-+++.. -|||..|..+.-+.+|++.|.-..+.+.++.+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~----~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD----KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh----hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 456799999999999999999999999999887532 299999999999999999998888888776554
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=45.45 E-value=56 Score=28.43 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHhhcCC-----CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 202 SNVEDSELRALFEQYG-----DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 202 ~~vteeeLr~lFs~fG-----~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..++..+|..++..-+ +|..+.+ ...|+||+-.. +.|+.++..|++..+.|+++.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4577888888887664 4566665 34578887754 5888999999999999999998754
No 216
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.25 E-value=93 Score=37.37 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=60.1
Q ss_pred CCCCCCCcEEEEeCCCCC-CCHHHHHHHhhcC----CCEEEEEe---------------CCC-------------c----
Q 003007 186 PYGEHPSRTLFVRNINSN-VEDSELRALFEQY----GDIRTLYT---------------ACK-------------H---- 228 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~-vteeeLr~lFs~f----G~I~sv~~---------------~~k-------------s---- 228 (858)
+.....+++|-|.|+.|+ |..++|.-+|..| |.|.+|.+ +++ +
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 344567899999999987 7888999999865 58888762 232 0
Q ss_pred ------------------c--cEEEEEEcCHHHHHHHHHHhcCCccc--cccccccc
Q 003007 229 ------------------R--GFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHF 263 (858)
Q Consensus 229 ------------------r--G~aFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~ 263 (858)
. =||.|+|.+++.|......+.|..+. +..|.+.|
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 27999999999999999999999886 45566665
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.94 E-value=1.2e+02 Score=35.34 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=51.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-CEEE---EEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYG-DIRT---LYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG-~I~s---v~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
++.|+|--+|..++-.||..+...+- .|.. |+..-.++=.++|.|.+.++|......+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 79999999999999999999887543 3333 33233455579999999999999999999988753
No 218
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.15 E-value=1.4e+02 Score=32.94 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=41.6
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCce-EEEEeCCCCccEEEEEEcCH-------HHHHHHHHHhC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKFIEFYDV-------RAAEAALKSLN 335 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I-~~irit~~srG~aFVeF~d~-------e~A~kAl~~Ln 335 (858)
.-+++.||+.++.-.||+..+.+.|-+ .++...+ ..+-||+.|-+. .+..++++.+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-HFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-CCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 359999999999999999999887643 4444444 467899999775 34555555543
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=27.92 E-value=1.5e+02 Score=32.70 Aligned_cols=47 Identities=9% Similarity=0.150 Sum_probs=36.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCE-EEEEeCCCcccEEEEEEcCH
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDI-RTLYTACKHRGFVMISYYDI 239 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I-~sv~~~~ksrG~aFV~F~d~ 239 (858)
.+-|+|+||+.++.-.+|+..+.+-|-+ .++.- .-+.|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCc
Confidence 4679999999999999999999877643 22222 23678899999875
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.03 E-value=2.1e+02 Score=34.49 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=55.5
Q ss_pred ccceeeeCCCCC-CchhHHHHhhccc----CceEEEEeC---------------CC-------------C----------
Q 003007 277 QGTLVVFNLDPS-VSNEDLRQIFGAY----GEVKEIRET---------------PH-------------K---------- 313 (858)
Q Consensus 277 ~~tLfV~NLp~~-vTeedL~~~Fs~f----G~I~~irit---------------~~-------------s---------- 313 (858)
...|-|.||+.+ +.-+||.-+|..| |.|.+|.|. +. +
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 457999999875 6889999888865 589998541 11 0
Q ss_pred --------------ccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEe
Q 003007 314 --------------RHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEP 348 (858)
Q Consensus 314 --------------rG~aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~ 348 (858)
-=||.|+|++.+.|.+.-....|.++.. ..|-+.|
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1279999999999999999999998874 5555555
No 221
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=24.24 E-value=1.8e+02 Score=32.82 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHhhCCCcceEEEeeecccccceeEE-----EEEecCCcccHHHHHHHhcCCcccCCCCccEEEEEeeec
Q 003007 705 KYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGY-----AFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARI 779 (858)
Q Consensus 705 k~~~~~L~~~id~~~~~~yDf~Ylp~df~~~~n~gy-----aFin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~v~~A~i 779 (858)
+++++.|+.+|+-.....||- ..=|| |-.-| --||=++-..-..+...|-.+.... .---|-.+.+..+
T Consensus 243 RIs~etlk~vl~g~~~~~f~k-CiIID----CRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplTh-p~aLifHCEfSsh 316 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLK-CIIID----CRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLTH-PRALIFHCEFSSH 316 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhc-eeEEe----ecceeeecCceeeeeeecchHHHHHHHHHhccccC-ceeEEEEeecccc
Confidence 568999999999776554442 12222 22223 2355555555555566666554321 1123334455555
Q ss_pred ccHHHHHHHhccCcCCCCCCCccceEEcCC
Q 003007 780 QGRAALVAHFQNSSLMNEDKRCRPILFHSE 809 (858)
Q Consensus 780 QG~~~l~~~~~~s~~~~~~~~~~P~~f~~~ 809 (858)
.|. .|.+||||.--|.....| |+||+++
T Consensus 317 RaP-~LA~HlRN~DR~~N~dhY-P~L~yPe 344 (427)
T COG5105 317 RAP-RLAQHLRNMDRMKNPDHY-PLLTYPE 344 (427)
T ss_pred cch-hHHHHHhhhhhhcCcccC-cccccce
Confidence 554 489999997776655555 7777765
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.19 E-value=1.2e+02 Score=27.46 Aligned_cols=56 Identities=16% Similarity=0.382 Sum_probs=41.3
Q ss_pred ceeeeCCCCCCchhHHHHhhcc-cC-ceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHh
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~-fG-~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~L 334 (858)
+-|+.-++...+..++++.++. || +|.+|+. .+...--|||++..-.+|......|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 5677778899999999998886 55 5667754 2323336999999988888876544
No 223
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.07 E-value=92 Score=34.51 Aligned_cols=144 Identities=15% Similarity=0.295 Sum_probs=88.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCC------------cccEEEEEEcCHHHHHHHH----HHhcC--C
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------HRGFVMISYYDIRAARTAM----RALQN--K 252 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~k------------srG~aFV~F~d~e~A~~Al----~~Lng--~ 252 (858)
-.|.|...|+..+++-.++...|.+||.|++|++... ......+.|.+.+.+-.-- +.|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999995332 2467899999988765433 22322 3
Q ss_pred ccccccccccccCCCC------CCCCCCC----------------CccceeeeCCCCCC-chhHHHHhhc---ccCc---
Q 003007 253 PLRRRKLDIHFSIPKD------NPSDKDL----------------NQGTLVVFNLDPSV-SNEDLRQIFG---AYGE--- 303 (858)
Q Consensus 253 ~l~gr~L~V~~a~pk~------~~~~~~~----------------~~~tLfV~NLp~~v-TeedL~~~Fs---~fG~--- 303 (858)
.+....|.+.|..-+- +..+.+. ..+.|.|.= ...+ +++-+.+.+. .=+.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCCCceE
Confidence 3566777776653110 0001111 112354442 2333 3333333321 1132
Q ss_pred -eEEEEeCC-------CCccEEEEEEcCHHHHHHHHHHhC
Q 003007 304 -VKEIRETP-------HKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 304 -I~~irit~-------~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
|++|.+.. =..+||.++|-+..-|.+.+.-|.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 34444311 146799999999999999998775
No 224
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.92 E-value=1.5e+02 Score=26.40 Aligned_cols=56 Identities=18% Similarity=0.396 Sum_probs=40.2
Q ss_pred ceeeeCCCCCCchhHHHHhhcc-cC-ceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHh
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~-fG-~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~L 334 (858)
+-|+..++...+..+|++.++. || +|.+|+. .+...--|||++..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 5778888999999999988886 55 5666653 2222235999998888877765443
No 225
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=1.9e+02 Score=33.37 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=42.6
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHH
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALK 332 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~ 332 (858)
...|-|.++|.....+||...|+.|+. +.++|.-.-.-++|-.|....-|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhh
Confidence 347889999999999999999999964 2222211124579999999999999987
Done!