Query 003007
Match_columns 858
No_of_seqs 587 out of 3323
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:52:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003007.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003007hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 5.9E-31 2E-35 281.5 22.0 237 114-360 22-272 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2.3E-30 7.8E-35 278.0 20.6 230 114-352 41-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 1.1E-29 3.6E-34 262.0 16.2 164 190-355 13-184 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 1.6E-28 5.5E-33 239.6 18.8 157 193-351 1-166 (166)
5 1b7f_A Protein (SXL-lethal pro 100.0 5.1E-28 1.7E-32 237.1 19.2 155 191-349 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 6.5E-28 2.2E-32 235.4 19.3 155 191-349 1-167 (167)
7 2qfj_A FBP-interacting repress 100.0 1.2E-27 4.2E-32 244.2 18.3 163 191-353 27-206 (216)
8 2adc_A Polypyrimidine tract-bi 100.0 2.9E-27 9.8E-32 246.4 21.0 164 189-352 31-228 (229)
9 3smz_A Protein raver-1, ribonu 99.9 2.5E-27 8.6E-32 253.3 19.9 178 190-379 20-210 (284)
10 3pgw_A U1-A; protein-RNA compl 99.9 3.4E-27 1.2E-31 252.0 20.6 164 188-351 5-282 (282)
11 1l3k_A Heterogeneous nuclear r 99.9 2.5E-27 8.5E-32 238.4 18.0 166 188-355 9-186 (196)
12 1fje_B Nucleolin RBD12, protei 99.9 5.5E-28 1.9E-32 239.4 12.3 162 188-352 9-174 (175)
13 3tyt_A Heterogeneous nuclear r 99.9 2.8E-27 9.7E-32 243.6 17.7 159 191-349 3-204 (205)
14 2g4b_A Splicing factor U2AF 65 99.9 3.3E-27 1.1E-31 232.6 16.9 153 191-349 3-171 (172)
15 1qm9_A Polypyrimidine tract-bi 99.9 2.2E-27 7.4E-32 240.3 15.8 162 191-352 2-197 (198)
16 2cjk_A Nuclear polyadenylated 99.9 1.5E-27 5.3E-32 233.8 13.6 155 191-352 2-166 (167)
17 3nmr_A Cugbp ELAV-like family 99.9 7E-27 2.4E-31 230.2 18.3 157 191-350 2-175 (175)
18 2yh0_A Splicing factor U2AF 65 99.9 8.1E-27 2.8E-31 235.0 17.0 162 191-354 3-196 (198)
19 2ghp_A U4/U6 snRNA-associated 99.9 1.3E-26 4.6E-31 248.7 17.6 182 186-379 35-236 (292)
20 3sde_A Paraspeckle component 1 99.9 7.2E-25 2.4E-29 232.9 17.8 156 189-355 19-182 (261)
21 2i2y_A Fusion protein consists 99.8 3.4E-19 1.2E-23 173.5 12.0 127 226-353 10-149 (150)
22 2kn4_A Immunoglobulin G-bindin 99.8 2.8E-18 9.7E-23 168.0 14.6 130 225-354 9-152 (158)
23 4f02_A Polyadenylate-binding p 99.8 2.2E-18 7.4E-23 177.4 11.4 155 114-268 15-182 (213)
24 4f25_A Polyadenylate-binding p 99.7 3.3E-18 1.1E-22 159.7 9.7 103 191-293 4-113 (115)
25 2qfj_A FBP-interacting repress 99.7 1.5E-17 5.3E-22 169.3 15.1 157 114-270 28-208 (216)
26 3md3_A Nuclear and cytoplasmic 99.7 2.1E-17 7.1E-22 160.7 13.5 150 115-265 1-165 (166)
27 1b7f_A Protein (SXL-lethal pro 99.7 2.3E-17 7.7E-22 161.2 13.6 150 115-264 4-168 (168)
28 2cjk_A Nuclear polyadenylated 99.7 3.4E-18 1.2E-22 167.2 7.2 153 114-267 3-166 (167)
29 1l3k_A Heterogeneous nuclear r 99.7 2.8E-17 9.7E-22 164.8 13.9 156 114-270 13-186 (196)
30 3nmr_A Cugbp ELAV-like family 99.7 3.5E-17 1.2E-21 160.7 14.0 151 114-264 3-174 (175)
31 1fxl_A Paraneoplastic encephal 99.7 5E-17 1.7E-21 158.2 13.6 150 115-264 3-167 (167)
32 1fje_B Nucleolin RBD12, protei 99.7 8.1E-18 2.8E-22 166.2 6.8 154 114-267 13-174 (175)
33 2g4b_A Splicing factor U2AF 65 99.7 2.2E-16 7.6E-21 155.0 11.1 148 114-264 4-171 (172)
34 2yh0_A Splicing factor U2AF 65 99.7 3.1E-16 1.1E-20 157.5 12.2 152 114-268 4-195 (198)
35 2adc_A Polypyrimidine tract-bi 99.7 6.8E-16 2.3E-20 160.4 14.4 151 114-267 34-228 (229)
36 1qm9_A Polypyrimidine tract-bi 99.6 7.8E-16 2.7E-20 155.3 13.4 150 115-267 4-197 (198)
37 3pgw_A U1-A; protein-RNA compl 99.6 9.6E-16 3.3E-20 163.3 13.7 75 191-265 206-281 (282)
38 4fxv_A ELAV-like protein 1; RN 99.6 5.3E-16 1.8E-20 141.2 9.4 75 277-351 19-98 (99)
39 2lea_A Serine/arginine-rich sp 99.6 4.7E-16 1.6E-20 149.5 8.2 120 230-354 5-129 (135)
40 4fxv_A ELAV-like protein 1; RN 99.6 9.1E-16 3.1E-20 139.7 9.5 76 191-266 18-98 (99)
41 4f25_A Polyadenylate-binding p 99.6 8.6E-16 2.9E-20 143.3 9.5 79 277-355 5-86 (115)
42 3lqv_A PRE-mRNA branch site pr 99.6 5.3E-16 1.8E-20 143.9 7.9 102 190-303 6-109 (115)
43 3s8s_A Histone-lysine N-methyl 99.6 2E-15 6.9E-20 140.1 9.4 82 276-357 5-91 (110)
44 3tyt_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 152.3 11.5 105 276-380 3-149 (205)
45 2hvz_A Splicing factor, argini 99.6 3.1E-15 1.1E-19 135.5 8.6 94 193-286 1-100 (101)
46 3lqv_A PRE-mRNA branch site pr 99.6 9.2E-15 3.2E-19 135.5 11.0 102 276-381 7-110 (115)
47 2lxi_A RNA-binding protein 10; 99.6 2E-15 6.8E-20 135.1 6.0 81 192-272 1-88 (91)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5E-15 1.7E-19 146.7 9.5 122 234-355 11-155 (165)
49 1sjq_A Polypyrimidine tract-bi 99.6 1.1E-14 3.9E-19 134.2 10.7 83 188-271 12-96 (105)
50 3sde_A Paraspeckle component 1 99.6 1.2E-14 4.2E-19 154.0 12.1 146 114-268 22-180 (261)
51 1whw_A Hypothetical protein ri 99.6 1.7E-14 5.7E-19 130.1 11.1 80 275-354 6-90 (99)
52 3s8s_A Histone-lysine N-methyl 99.5 1.3E-14 4.5E-19 134.6 10.2 79 189-267 3-86 (110)
53 2do4_A Squamous cell carcinoma 99.5 2.3E-14 7.9E-19 129.5 11.5 81 274-354 14-98 (100)
54 3r27_A HnRNP L, heterogeneous 99.5 1.3E-14 4.6E-19 132.5 9.7 80 188-268 17-98 (100)
55 1whw_A Hypothetical protein ri 99.5 2.5E-14 8.4E-19 129.0 11.3 82 189-270 5-91 (99)
56 1x5u_A Splicing factor 3B subu 99.5 2.7E-14 9.2E-19 130.1 11.3 82 274-355 12-98 (105)
57 2lxi_A RNA-binding protein 10; 99.5 4.4E-15 1.5E-19 132.9 5.9 77 278-354 2-85 (91)
58 1x4a_A Splicing factor, argini 99.5 3.2E-14 1.1E-18 130.7 11.6 81 274-354 19-101 (109)
59 2d9p_A Polyadenylate-binding p 99.5 3.2E-14 1.1E-18 129.3 11.3 82 274-355 12-96 (103)
60 2cph_A RNA binding motif prote 99.5 3.9E-14 1.3E-18 129.3 11.9 81 274-354 12-99 (107)
61 2dgv_A HnRNP M, heterogeneous 99.5 4E-14 1.4E-18 125.7 11.6 81 189-269 5-88 (92)
62 3bs9_A Nucleolysin TIA-1 isofo 99.5 1.9E-14 6.6E-19 126.3 9.4 77 276-352 5-86 (87)
63 1x5u_A Splicing factor 3B subu 99.5 4.6E-14 1.6E-18 128.6 12.2 83 187-269 10-97 (105)
64 1sjq_A Polypyrimidine tract-bi 99.5 1.2E-14 4E-19 134.1 8.1 79 276-355 15-95 (105)
65 2lkz_A RNA-binding protein 5; 99.5 6.7E-15 2.3E-19 133.3 6.4 75 277-351 9-94 (95)
66 2cph_A RNA binding motif prote 99.5 4.8E-14 1.6E-18 128.7 12.0 84 187-270 10-100 (107)
67 3md1_A Nuclear and cytoplasmic 99.5 2.6E-14 8.7E-19 124.4 9.7 76 278-353 2-82 (83)
68 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5.2E-19 128.7 8.2 72 277-349 7-78 (89)
69 2dgs_A DAZ-associated protein 99.5 5.8E-14 2E-18 126.6 12.2 82 188-270 6-92 (99)
70 2cq0_A Eukaryotic translation 99.5 2.8E-14 9.7E-19 129.6 10.2 82 274-355 12-98 (103)
71 2dnz_A Probable RNA-binding pr 99.5 4.8E-14 1.6E-18 126.0 11.5 81 190-270 3-88 (95)
72 3md1_A Nuclear and cytoplasmic 99.5 2.8E-14 9.7E-19 124.1 9.7 77 192-268 1-82 (83)
73 1x4a_A Splicing factor, argini 99.5 6.5E-14 2.2E-18 128.7 12.6 83 187-269 17-101 (109)
74 2cqi_A Nucleolysin TIAR; RNA r 99.5 4.2E-14 1.5E-18 128.5 11.2 82 274-355 12-96 (103)
75 3r27_A HnRNP L, heterogeneous 99.5 2.5E-14 8.5E-19 130.8 9.6 77 276-353 20-98 (100)
76 2cpz_A CUG triplet repeat RNA- 99.5 2.9E-14 9.9E-19 132.3 10.1 81 275-355 23-108 (115)
77 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.4E-14 8.1E-19 125.7 9.0 78 190-267 4-86 (87)
78 1wex_A Hypothetical protein (r 99.5 6.4E-14 2.2E-18 128.9 12.2 82 187-269 10-93 (104)
79 2dnz_A Probable RNA-binding pr 99.5 4.5E-14 1.5E-18 126.1 10.9 79 276-354 4-87 (95)
80 2cqc_A Arginine/serine-rich sp 99.5 4.2E-14 1.5E-18 126.1 10.7 78 274-351 12-94 (95)
81 2x1f_A MRNA 3'-END-processing 99.5 3.3E-14 1.1E-18 127.6 10.1 78 191-268 1-83 (96)
82 2jvr_A Nucleolar protein 3; RN 99.5 1.9E-14 6.4E-19 134.1 8.6 90 257-353 15-106 (111)
83 1why_A Hypothetical protein ri 99.5 5.1E-14 1.8E-18 126.6 11.3 78 276-354 16-95 (97)
84 3mdf_A Peptidyl-prolyl CIS-tra 99.5 3E-14 1E-18 124.5 9.4 75 276-350 6-85 (85)
85 2dgs_A DAZ-associated protein 99.5 5.4E-14 1.9E-18 126.8 11.4 80 275-355 8-92 (99)
86 2do4_A Squamous cell carcinoma 99.5 5.9E-14 2E-18 126.8 11.6 81 188-268 13-97 (100)
87 2ad9_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 133.6 10.7 85 187-272 26-112 (119)
88 4a8x_A RNA-binding protein wit 99.5 2.8E-14 9.4E-19 125.4 9.1 79 276-354 3-87 (88)
89 2x1f_A MRNA 3'-END-processing 99.5 4E-14 1.4E-18 127.1 10.3 78 277-354 2-84 (96)
90 2dgo_A Cytotoxic granule-assoc 99.5 5.5E-14 1.9E-18 130.3 11.5 82 274-355 12-98 (115)
91 2dnm_A SRP46 splicing factor; 99.5 4E-14 1.4E-18 128.7 10.3 83 187-269 8-95 (103)
92 2dnq_A RNA-binding protein 4B; 99.5 4.5E-14 1.5E-18 125.3 10.4 77 275-354 6-82 (90)
93 2dnh_A Bruno-like 5, RNA bindi 99.5 8.9E-14 3E-18 126.6 12.6 81 189-269 12-99 (105)
94 2d9p_A Polyadenylate-binding p 99.5 5.8E-14 2E-18 127.6 11.3 83 188-270 11-96 (103)
95 2dgo_A Cytotoxic granule-assoc 99.5 8.2E-14 2.8E-18 129.1 12.4 84 187-270 10-98 (115)
96 2cpf_A RNA binding motif prote 99.5 4.3E-14 1.5E-18 127.1 10.1 81 190-270 3-91 (98)
97 2cq1_A PTB-like protein L; RRM 99.5 6.8E-14 2.3E-18 128.1 11.5 82 188-270 11-94 (101)
98 1p27_B RNA-binding protein 8A; 99.5 3.4E-14 1.2E-18 129.6 9.5 79 275-353 21-104 (106)
99 2dnh_A Bruno-like 5, RNA bindi 99.5 6.5E-14 2.2E-18 127.5 11.3 81 275-355 13-100 (105)
100 2e5h_A Zinc finger CCHC-type a 99.5 6.8E-14 2.3E-18 124.7 11.2 76 275-350 14-94 (94)
101 2cq0_A Eukaryotic translation 99.5 4.8E-14 1.6E-18 128.1 10.3 82 188-269 11-97 (103)
102 2cpf_A RNA binding motif prote 99.5 3.1E-14 1.1E-18 128.0 9.0 79 276-354 4-90 (98)
103 3mdf_A Peptidyl-prolyl CIS-tra 99.5 4.2E-14 1.4E-18 123.5 9.5 77 189-265 4-85 (85)
104 2dgx_A KIAA0430 protein; RRM d 99.5 4.9E-14 1.7E-18 126.9 10.2 79 276-354 8-92 (96)
105 2cq3_A RNA-binding protein 9; 99.5 1.1E-13 3.7E-18 125.8 12.5 84 187-270 10-96 (103)
106 1p27_B RNA-binding protein 8A; 99.5 4E-14 1.4E-18 129.2 9.7 81 188-268 19-104 (106)
107 1wf1_A RNA-binding protein RAL 99.5 3.2E-14 1.1E-18 131.1 9.1 96 254-353 5-101 (110)
108 2cq1_A PTB-like protein L; RRM 99.5 6.5E-14 2.2E-18 128.2 11.1 80 275-355 13-94 (101)
109 2cqi_A Nucleolysin TIAR; RNA r 99.5 7E-14 2.4E-18 127.0 11.2 82 188-269 11-95 (103)
110 1x4h_A RNA-binding protein 28; 99.5 8.4E-14 2.9E-18 127.9 11.9 81 275-355 13-104 (111)
111 2dnq_A RNA-binding protein 4B; 99.5 8E-14 2.7E-18 123.7 11.3 79 189-270 5-83 (90)
112 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.7E-14 1.3E-18 128.5 9.3 81 275-355 10-95 (102)
113 1oo0_B CG8781-PA, drosophila Y 99.5 4.6E-14 1.6E-18 129.8 10.0 81 275-355 24-109 (110)
114 2dnm_A SRP46 splicing factor; 99.5 4.5E-14 1.6E-18 128.3 9.7 80 275-354 11-95 (103)
115 1x5s_A Cold-inducible RNA-bind 99.5 3.5E-14 1.2E-18 128.7 8.9 80 276-355 11-95 (102)
116 3p5t_L Cleavage and polyadenyl 99.5 1.2E-14 3.9E-19 129.4 5.5 76 278-353 2-84 (90)
117 1x4d_A Matrin 3; structural ge 99.5 4.1E-14 1.4E-18 129.8 9.3 80 188-268 11-93 (102)
118 2cq3_A RNA-binding protein 9; 99.5 1E-13 3.5E-18 125.9 11.8 81 274-354 12-95 (103)
119 1wex_A Hypothetical protein (r 99.5 6E-14 2.1E-18 129.1 10.3 78 276-354 14-93 (104)
120 2fy1_A RNA-binding motif prote 99.5 8.9E-14 3.1E-18 129.9 11.6 79 276-354 6-88 (116)
121 1x5s_A Cold-inducible RNA-bind 99.5 6.1E-14 2.1E-18 127.1 10.1 81 189-269 9-94 (102)
122 2cpz_A CUG triplet repeat RNA- 99.5 5.1E-14 1.8E-18 130.6 9.8 83 188-270 21-108 (115)
123 2jrs_A RNA-binding protein 39; 99.5 7.5E-14 2.6E-18 128.8 10.9 82 187-268 21-107 (108)
124 2dgp_A Bruno-like 4, RNA bindi 99.5 6.4E-14 2.2E-18 127.8 10.3 82 274-355 10-99 (106)
125 2dgv_A HnRNP M, heterogeneous 99.5 5E-14 1.7E-18 125.1 9.3 79 276-354 7-88 (92)
126 1x4h_A RNA-binding protein 28; 99.5 9.2E-14 3.1E-18 127.7 11.4 84 187-270 10-104 (111)
127 2dgt_A RNA-binding protein 30; 99.5 7.9E-14 2.7E-18 124.2 10.6 78 274-354 7-84 (92)
128 3pgw_S U1-70K; protein-RNA com 99.5 1.3E-14 4.4E-19 165.5 6.7 145 209-353 9-183 (437)
129 2e5h_A Zinc finger CCHC-type a 99.5 7.3E-14 2.5E-18 124.5 10.1 78 188-265 12-94 (94)
130 1fjc_A Nucleolin RBD2, protein 99.5 3.9E-14 1.3E-18 127.0 8.4 81 275-355 14-94 (96)
131 1why_A Hypothetical protein ri 99.5 8.4E-14 2.9E-18 125.2 10.6 79 189-268 14-94 (97)
132 1u6f_A Tcubp1, RNA-binding pro 99.5 9.4E-14 3.2E-18 133.0 11.5 83 273-355 38-125 (139)
133 1x5t_A Splicing factor 3B subu 99.5 4.2E-14 1.5E-18 126.5 8.5 81 190-270 3-89 (96)
134 1x5t_A Splicing factor 3B subu 99.5 3.6E-14 1.2E-18 127.0 8.0 80 276-355 4-89 (96)
135 2dgp_A Bruno-like 4, RNA bindi 99.5 7.9E-14 2.7E-18 127.2 10.4 83 187-269 8-98 (106)
136 2dnp_A RNA-binding protein 14; 99.5 8E-14 2.7E-18 123.6 10.1 77 275-354 7-83 (90)
137 2ywk_A Putative RNA-binding pr 99.5 6.1E-14 2.1E-18 125.3 9.3 77 275-351 14-94 (95)
138 2cqb_A Peptidyl-prolyl CIS-tra 99.5 5E-14 1.7E-18 127.6 8.8 82 189-270 9-95 (102)
139 2dhg_A TRNA selenocysteine ass 99.5 1.3E-13 4.5E-18 125.3 11.6 81 189-269 6-92 (104)
140 2jvo_A Nucleolar protein 3; nu 99.5 4.6E-14 1.6E-18 130.3 8.6 80 273-355 27-106 (108)
141 2jrs_A RNA-binding protein 39; 99.5 8.4E-14 2.9E-18 128.5 10.3 80 274-353 23-107 (108)
142 2cqc_A Arginine/serine-rich sp 99.5 7.9E-14 2.7E-18 124.4 9.8 79 188-266 11-94 (95)
143 2kxn_B Transformer-2 protein h 99.5 9E-14 3.1E-18 132.6 10.8 78 276-353 45-127 (129)
144 2ad9_A Polypyrimidine tract-bi 99.5 4.9E-14 1.7E-18 132.9 8.8 79 276-355 30-110 (119)
145 2e5j_A Methenyltetrahydrofolat 99.5 5.5E-14 1.9E-18 126.6 8.7 78 276-353 18-95 (97)
146 2la4_A Nuclear and cytoplasmic 99.5 5.6E-14 1.9E-18 127.2 8.8 77 190-267 25-101 (101)
147 3p5t_L Cleavage and polyadenyl 99.5 2.5E-14 8.6E-19 127.1 6.3 77 193-269 2-85 (90)
148 2lkz_A RNA-binding protein 5; 99.5 3.1E-14 1.1E-18 128.9 6.9 78 189-266 6-94 (95)
149 2a3j_A U1 small nuclear ribonu 99.5 6.9E-14 2.4E-18 133.3 9.7 80 276-355 28-113 (127)
150 1x4g_A Nucleolysin TIAR; struc 99.5 7.6E-14 2.6E-18 128.3 9.7 78 276-354 24-101 (109)
151 1x4d_A Matrin 3; structural ge 99.5 6.4E-14 2.2E-18 128.6 9.0 77 276-353 14-93 (102)
152 2dgt_A RNA-binding protein 30; 99.5 9.6E-14 3.3E-18 123.6 9.9 80 187-269 5-84 (92)
153 2xnq_A Nuclear polyadenylated 99.5 1.1E-13 3.9E-18 125.1 10.5 76 275-353 20-96 (97)
154 1wi8_A EIF-4B, eukaryotic tran 99.5 1.4E-13 4.8E-18 125.4 11.0 81 187-269 10-96 (104)
155 2div_A TRNA selenocysteine ass 99.5 8.5E-14 2.9E-18 125.4 9.5 81 189-269 6-96 (99)
156 2kxn_B Transformer-2 protein h 99.5 1.1E-13 3.9E-18 131.9 10.8 82 187-268 41-127 (129)
157 2ywk_A Putative RNA-binding pr 99.5 7.6E-14 2.6E-18 124.6 9.0 79 187-265 11-93 (95)
158 1wi8_A EIF-4B, eukaryotic tran 99.5 1.1E-13 3.8E-18 126.0 10.3 79 275-355 13-97 (104)
159 2la6_A RNA-binding protein FUS 99.5 1E-13 3.5E-18 125.1 10.0 76 275-350 11-99 (99)
160 2wbr_A GW182, gawky, LD47780P; 99.5 5.1E-14 1.8E-18 125.3 7.7 73 191-264 6-78 (89)
161 2ytc_A PRE-mRNA-splicing facto 99.5 9.2E-14 3.2E-18 121.5 9.3 75 275-350 10-85 (85)
162 2dgu_A Heterogeneous nuclear r 99.5 9.7E-14 3.3E-18 126.3 9.8 78 276-356 10-87 (103)
163 2err_A Ataxin-2-binding protei 99.5 6.2E-14 2.1E-18 129.4 8.6 80 273-352 25-107 (109)
164 2la4_A Nuclear and cytoplasmic 99.5 4.8E-14 1.6E-18 127.6 7.7 76 276-352 26-101 (101)
165 2khc_A Testis-specific RNP-typ 99.5 8.7E-14 3E-18 129.5 9.6 77 274-350 37-118 (118)
166 2cpj_A Non-POU domain-containi 99.5 9.7E-14 3.3E-18 125.3 9.6 78 275-353 13-90 (99)
167 2cpj_A Non-POU domain-containi 99.5 1E-13 3.5E-18 125.2 9.7 80 188-268 11-90 (99)
168 1oo0_B CG8781-PA, drosophila Y 99.5 8.9E-14 3.1E-18 127.8 9.5 81 188-268 22-107 (110)
169 2a3j_A U1 small nuclear ribonu 99.5 1.1E-13 3.9E-18 131.8 10.5 80 189-268 26-111 (127)
170 2cpi_A CCR4-NOT transcription 99.5 1.1E-13 3.7E-18 128.1 10.0 80 274-353 12-102 (111)
171 2cpd_A Apobec-1 stimulating pr 99.5 2E-13 6.8E-18 123.3 11.5 77 275-354 13-91 (99)
172 4a8x_A RNA-binding protein wit 99.5 9E-14 3.1E-18 122.1 9.0 78 191-268 3-86 (88)
173 2ytc_A PRE-mRNA-splicing facto 99.5 1.2E-13 4.1E-18 120.8 9.8 78 187-265 7-85 (85)
174 1x4c_A Splicing factor, argini 99.5 1.1E-13 3.7E-18 127.4 9.9 77 276-354 14-95 (108)
175 3ns6_A Eukaryotic translation 99.5 4.3E-14 1.5E-18 128.4 6.8 76 277-352 6-93 (100)
176 2e5j_A Methenyltetrahydrofolat 99.5 1.4E-13 4.7E-18 124.0 10.0 80 189-268 16-95 (97)
177 2dhg_A TRNA selenocysteine ass 99.5 9.3E-14 3.2E-18 126.3 8.9 80 276-355 8-93 (104)
178 2do0_A HnRNP M, heterogeneous 99.5 1.7E-13 5.8E-18 126.6 10.7 79 276-354 14-96 (114)
179 2fy1_A RNA-binding motif prote 99.5 1.5E-13 5.2E-18 128.3 10.4 81 189-269 4-88 (116)
180 2cqd_A RNA-binding region cont 99.5 1.8E-13 6E-18 127.2 10.7 80 273-353 13-97 (116)
181 3zzy_A Polypyrimidine tract-bi 99.5 9.2E-14 3.2E-18 132.8 9.0 77 278-354 29-108 (130)
182 2hvz_A Splicing factor, argini 99.5 4.8E-14 1.6E-18 127.7 6.7 76 278-353 1-76 (101)
183 1whx_A Hypothetical protein ri 99.5 9E-14 3.1E-18 128.9 8.7 76 276-352 9-84 (111)
184 3ex7_B RNA-binding protein 8A; 99.5 1.1E-13 3.7E-18 130.3 9.4 81 275-355 20-105 (126)
185 1fjc_A Nucleolin RBD2, protein 99.5 6.1E-14 2.1E-18 125.7 7.2 81 188-268 12-92 (96)
186 2cq4_A RNA binding motif prote 99.5 3.5E-14 1.2E-18 131.5 5.9 77 276-353 24-105 (114)
187 2cqd_A RNA-binding region cont 99.5 2.7E-13 9.1E-18 126.0 11.7 83 187-270 12-99 (116)
188 2cpe_A RNA-binding protein EWS 99.5 1.1E-13 3.8E-18 127.8 9.1 81 274-354 12-105 (113)
189 2khc_A Testis-specific RNP-typ 99.5 1.4E-13 5E-18 128.0 9.8 79 187-265 35-118 (118)
190 2kn4_A Immunoglobulin G-bindin 99.5 1.5E-13 5.1E-18 134.3 10.4 82 189-270 67-153 (158)
191 2dgu_A Heterogeneous nuclear r 99.5 1.9E-13 6.5E-18 124.4 10.4 79 189-270 8-86 (103)
192 3ns6_A Eukaryotic translation 99.5 3.9E-14 1.3E-18 128.7 5.8 77 191-267 5-93 (100)
193 2nlw_A Eukaryotic translation 99.5 1.5E-13 5E-18 125.9 9.7 77 276-352 14-100 (105)
194 2dis_A Unnamed protein product 99.5 1.8E-13 6.2E-18 125.4 10.3 82 190-271 6-96 (109)
195 2la6_A RNA-binding protein FUS 99.5 1.6E-13 5.5E-18 123.9 9.8 78 188-265 9-99 (99)
196 3ucg_A Polyadenylate-binding p 99.5 1.3E-13 4.4E-18 121.5 8.9 76 276-352 5-85 (89)
197 3ex7_B RNA-binding protein 8A; 99.5 1.5E-13 5.1E-18 129.4 9.9 83 188-270 18-105 (126)
198 1nu4_A U1A RNA binding domain; 99.5 9.1E-14 3.1E-18 124.6 8.1 80 189-268 5-90 (97)
199 2dh8_A DAZ-associated protein 99.5 1.7E-13 5.8E-18 124.9 9.9 83 187-270 11-98 (105)
200 1x4e_A RNA binding motif, sing 99.5 1.2E-13 4.1E-18 121.0 8.5 76 190-265 3-83 (85)
201 2fc9_A NCL protein; structure 99.5 1.3E-13 4.6E-18 124.7 9.1 82 188-269 11-93 (101)
202 1x4f_A Matrin 3; structural ge 99.5 7.6E-14 2.6E-18 130.2 7.7 80 189-269 22-104 (112)
203 2kvi_A Nuclear polyadenylated 99.5 9.2E-14 3.1E-18 125.0 8.0 77 275-354 8-85 (96)
204 2dng_A Eukaryotic translation 99.5 2.3E-13 8E-18 123.7 10.8 82 187-270 10-96 (103)
205 2dng_A Eukaryotic translation 99.5 2.3E-13 8E-18 123.7 10.7 79 275-355 13-96 (103)
206 1p1t_A Cleavage stimulation fa 99.5 7.7E-14 2.6E-18 126.7 7.5 80 276-355 7-91 (104)
207 2dgx_A KIAA0430 protein; RRM d 99.5 1.4E-13 4.9E-18 123.8 9.2 80 191-270 8-93 (96)
208 2do0_A HnRNP M, heterogeneous 99.5 3.4E-13 1.2E-17 124.6 11.9 81 188-268 11-95 (114)
209 2fc9_A NCL protein; structure 99.5 1.2E-13 4.1E-18 125.0 8.7 81 274-354 12-93 (101)
210 1x4c_A Splicing factor, argini 99.5 2.8E-13 9.7E-18 124.5 11.2 79 189-269 12-95 (108)
211 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.9E-13 6.6E-18 133.7 10.7 80 276-355 38-122 (156)
212 1x4g_A Nucleolysin TIAR; struc 99.5 2.3E-13 7.8E-18 125.2 10.5 80 189-269 22-101 (109)
213 1whx_A Hypothetical protein ri 99.5 8E-14 2.7E-18 129.2 7.5 77 189-266 7-83 (111)
214 2cpe_A RNA-binding protein EWS 99.5 1.7E-13 5.9E-18 126.5 9.7 82 188-269 11-105 (113)
215 2err_A Ataxin-2-binding protei 99.5 1.1E-13 3.8E-18 127.7 8.3 81 187-267 24-107 (109)
216 2cqp_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 124.3 8.3 78 275-352 13-95 (98)
217 2dnp_A RNA-binding protein 14; 99.4 2.3E-13 7.9E-18 120.7 10.0 78 189-269 6-83 (90)
218 2div_A TRNA selenocysteine ass 99.4 1.1E-13 3.6E-18 124.8 7.9 78 276-353 8-95 (99)
219 2cpx_A Hypothetical protein FL 99.4 1.5E-13 5.2E-18 127.1 9.2 80 276-355 24-108 (115)
220 1nu4_A U1A RNA binding domain; 99.4 9.8E-14 3.4E-18 124.4 7.6 79 276-354 7-91 (97)
221 2cqh_A IGF-II mRNA-binding pro 99.4 7.1E-14 2.4E-18 124.6 6.6 78 276-355 7-86 (93)
222 2kvi_A Nuclear polyadenylated 99.4 1.5E-13 5E-18 123.6 8.7 79 189-270 7-86 (96)
223 1u6f_A Tcubp1, RNA-binding pro 99.4 2.3E-13 7.8E-18 130.3 10.6 83 188-270 38-125 (139)
224 2m2b_A RNA-binding protein 10; 99.4 1.4E-13 4.7E-18 131.1 9.0 83 186-269 17-110 (131)
225 2xnq_A Nuclear polyadenylated 99.4 2.5E-13 8.6E-18 122.7 10.2 77 188-267 18-95 (97)
226 2kt5_A RNA and export factor-b 99.4 4.4E-13 1.5E-17 126.1 12.2 79 275-353 33-115 (124)
227 3ulh_A THO complex subunit 4; 99.4 1.9E-13 6.5E-18 124.9 9.4 75 276-350 28-106 (107)
228 2fc8_A NCL protein; structure 99.4 2.4E-13 8.1E-18 123.2 10.0 83 273-355 11-95 (102)
229 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.8E-14 3.3E-18 125.9 7.5 77 275-353 17-99 (100)
230 1x4f_A Matrin 3; structural ge 99.4 9.8E-14 3.4E-18 129.4 7.6 77 276-353 24-103 (112)
231 1p1t_A Cleavage stimulation fa 99.4 5.7E-14 1.9E-18 127.6 5.9 79 190-268 6-89 (104)
232 2jvo_A Nucleolar protein 3; nu 99.4 1.5E-13 5E-18 127.0 8.6 79 187-268 26-104 (108)
233 1x5p_A Negative elongation fac 99.4 3.9E-13 1.3E-17 121.0 11.0 76 276-354 14-89 (97)
234 2rs2_A Musashi-1, RNA-binding 99.4 2.1E-13 7.1E-18 125.9 9.4 81 274-355 22-107 (109)
235 1s79_A Lupus LA protein; RRM, 99.4 1.7E-13 5.9E-18 125.7 8.7 77 274-351 8-88 (103)
236 3ulh_A THO complex subunit 4; 99.4 2.5E-13 8.5E-18 124.1 9.8 78 188-265 25-106 (107)
237 2jwn_A Embryonic polyadenylate 99.4 3.8E-14 1.3E-18 133.1 4.4 77 276-353 35-116 (124)
238 3ucg_A Polyadenylate-binding p 99.4 2.2E-13 7.6E-18 120.0 9.0 76 191-267 5-85 (89)
239 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.4E-13 4.8E-18 124.8 7.9 79 188-268 15-99 (100)
240 2cqh_A IGF-II mRNA-binding pro 99.4 1.2E-13 4.1E-18 123.1 7.3 79 190-270 6-86 (93)
241 2cpx_A Hypothetical protein FL 99.4 2.1E-13 7.3E-18 126.2 9.2 82 189-270 22-108 (115)
242 2cpd_A Apobec-1 stimulating pr 99.4 4.6E-13 1.6E-17 120.8 11.1 78 189-269 12-91 (99)
243 2krb_A Eukaryotic translation 99.4 2.3E-13 7.8E-18 118.4 8.7 71 192-262 1-81 (81)
244 1x5o_A RNA binding motif, sing 99.4 4E-13 1.4E-17 124.2 10.8 78 275-352 23-112 (114)
245 2i2y_A Fusion protein consists 99.4 3.5E-13 1.2E-17 131.0 10.9 80 188-267 69-148 (150)
246 2dh8_A DAZ-associated protein 99.4 1.9E-13 6.6E-18 124.6 8.5 80 274-354 13-97 (105)
247 2mss_A Protein (musashi1); RNA 99.4 1.2E-13 4.2E-18 118.0 6.8 70 279-349 1-75 (75)
248 1sjr_A Polypyrimidine tract-bi 99.4 2E-13 6.9E-18 135.3 9.2 77 277-353 46-125 (164)
249 2jvr_A Nucleolar protein 3; RN 99.4 1.3E-13 4.3E-18 128.5 7.3 77 190-266 26-104 (111)
250 2ek1_A RNA-binding protein 12; 99.4 9.4E-14 3.2E-18 124.0 6.2 76 276-351 14-94 (95)
251 3s7r_A Heterogeneous nuclear r 99.4 2.8E-13 9.5E-18 119.1 9.1 75 274-349 8-87 (87)
252 2dis_A Unnamed protein product 99.4 2.5E-13 8.7E-18 124.4 9.2 79 276-354 7-94 (109)
253 1x4e_A RNA binding motif, sing 99.4 7.2E-14 2.5E-18 122.4 5.3 76 276-351 4-84 (85)
254 2nlw_A Eukaryotic translation 99.4 2.8E-13 9.4E-18 124.1 9.2 80 188-267 11-100 (105)
255 1x5p_A Negative elongation fac 99.4 6.6E-13 2.3E-17 119.5 11.6 79 188-269 11-89 (97)
256 2krb_A Eukaryotic translation 99.4 1.2E-13 4E-18 120.3 6.3 69 278-346 2-80 (81)
257 2fc8_A NCL protein; structure 99.4 2.7E-13 9.4E-18 122.7 9.0 83 188-270 11-95 (102)
258 2m2b_A RNA-binding protein 10; 99.4 1E-13 3.5E-18 132.1 6.5 79 274-353 20-109 (131)
259 3n9u_C Cleavage and polyadenyl 99.4 1.8E-13 6E-18 134.9 8.1 78 276-353 54-138 (156)
260 1x4b_A Heterogeneous nuclear r 99.4 1.6E-13 5.4E-18 127.5 7.3 78 276-354 26-108 (116)
261 1x5o_A RNA binding motif, sing 99.4 5.3E-13 1.8E-17 123.4 10.8 80 188-267 21-112 (114)
262 2cqp_A RNA-binding protein 12; 99.4 1.7E-13 5.8E-18 123.2 7.2 80 188-267 11-95 (98)
263 1h2v_Z 20 kDa nuclear CAP bind 99.4 4.6E-13 1.6E-17 131.0 10.7 80 189-268 36-120 (156)
264 1wf1_A RNA-binding protein RAL 99.4 3.5E-13 1.2E-17 124.1 9.3 76 190-268 25-101 (110)
265 3s7r_A Heterogeneous nuclear r 99.4 3.6E-13 1.2E-17 118.4 8.7 76 188-264 7-87 (87)
266 1wg1_A KIAA1579 protein, homol 99.4 2.1E-13 7.1E-18 120.7 7.2 76 276-353 4-79 (88)
267 2ki2_A SS-DNA binding protein 99.4 9.8E-14 3.3E-18 122.8 5.0 75 278-353 2-81 (90)
268 2e5i_A Heterogeneous nuclear r 99.4 4.7E-13 1.6E-17 127.1 9.8 74 279-353 27-103 (124)
269 1s79_A Lupus LA protein; RRM, 99.4 3.3E-13 1.1E-17 123.8 8.3 76 190-266 9-88 (103)
270 3n9u_C Cleavage and polyadenyl 99.4 2.4E-13 8.3E-18 133.9 8.0 77 191-267 54-137 (156)
271 2lea_A Serine/arginine-rich sp 99.4 1.8E-13 6.3E-18 131.3 7.0 85 186-270 41-130 (135)
272 2kt5_A RNA and export factor-b 99.4 5.4E-13 1.8E-17 125.5 10.0 82 188-269 31-116 (124)
273 2e44_A Insulin-like growth fac 99.4 7.7E-13 2.6E-17 118.4 10.6 78 276-353 14-93 (96)
274 2ek1_A RNA-binding protein 12; 99.4 1.5E-13 5.2E-18 122.7 5.8 77 189-265 12-93 (95)
275 2cqg_A TDP-43, TAR DNA-binding 99.4 8.9E-13 3E-17 119.7 11.0 81 188-270 11-96 (103)
276 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 7.1E-13 2.4E-17 126.5 10.7 76 274-349 60-140 (140)
277 2cpi_A CCR4-NOT transcription 99.4 3.4E-13 1.2E-17 124.7 8.1 80 189-268 12-102 (111)
278 1fj7_A Nucleolin RBD1, protein 99.4 1.6E-13 5.6E-18 124.1 5.8 79 276-355 16-98 (101)
279 2dgw_A Probable RNA-binding pr 99.4 5.7E-13 1.9E-17 118.2 9.1 76 276-353 9-88 (91)
280 2dgw_A Probable RNA-binding pr 99.4 5.4E-13 1.8E-17 118.4 8.8 78 189-268 7-88 (91)
281 3zzy_A Polypyrimidine tract-bi 99.4 7E-13 2.4E-17 126.7 10.2 77 193-269 29-108 (130)
282 2rs2_A Musashi-1, RNA-binding 99.4 4.8E-13 1.6E-17 123.5 8.8 81 188-269 21-106 (109)
283 2cqg_A TDP-43, TAR DNA-binding 99.4 1.1E-12 3.6E-17 119.2 10.9 78 275-354 13-95 (103)
284 1wg1_A KIAA1579 protein, homol 99.4 2.5E-13 8.5E-18 120.2 6.5 75 190-266 3-77 (88)
285 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 7.9E-13 2.7E-17 126.2 10.5 77 188-264 59-140 (140)
286 2ki2_A SS-DNA binding protein 99.4 1.3E-13 4.5E-18 122.0 4.7 76 193-269 2-82 (90)
287 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.2E-13 7.4E-18 116.8 5.9 71 278-349 1-76 (77)
288 2mss_A Protein (musashi1); RNA 99.4 2.6E-13 8.8E-18 116.0 6.3 70 194-264 1-75 (75)
289 3d2w_A TAR DNA-binding protein 99.4 8E-13 2.7E-17 117.7 9.2 75 276-354 10-86 (89)
290 3beg_B Splicing factor, argini 99.4 6.9E-13 2.4E-17 123.6 9.1 74 277-352 16-94 (115)
291 1wg5_A Heterogeneous nuclear r 99.4 1.2E-12 4.1E-17 119.6 10.5 79 189-268 12-95 (104)
292 2e44_A Insulin-like growth fac 99.4 1.4E-12 4.7E-17 116.8 10.5 79 190-268 13-93 (96)
293 1wg5_A Heterogeneous nuclear r 99.4 1E-12 3.5E-17 120.1 9.6 78 275-353 13-95 (104)
294 2cq2_A Hypothetical protein LO 99.4 7.5E-13 2.6E-17 123.8 8.8 78 188-266 21-105 (114)
295 2cq4_A RNA binding motif prote 99.4 2.4E-13 8.3E-18 125.9 5.4 77 190-267 23-104 (114)
296 1fj7_A Nucleolin RBD1, protein 99.4 4.2E-13 1.4E-17 121.4 6.8 80 189-269 14-97 (101)
297 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.5E-13 8.7E-18 116.3 5.0 71 193-264 1-76 (77)
298 1sjr_A Polypyrimidine tract-bi 99.4 1.2E-12 4.2E-17 129.7 10.5 79 191-269 45-126 (164)
299 2diu_A KIAA0430 protein; struc 99.4 1.1E-12 3.7E-17 117.9 9.0 72 278-354 10-86 (96)
300 2jwn_A Embryonic polyadenylate 99.4 1.1E-12 3.7E-17 123.2 9.4 77 191-268 35-116 (124)
301 1x4b_A Heterogeneous nuclear r 99.4 7.4E-13 2.5E-17 123.0 8.0 79 191-270 26-109 (116)
302 2e5g_A U6 snRNA-specific termi 99.4 2.7E-12 9.3E-17 114.8 11.4 79 190-269 6-84 (94)
303 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.1E-12 3.7E-17 129.8 9.5 83 187-269 67-154 (165)
304 2cq2_A Hypothetical protein LO 99.4 8.6E-13 2.9E-17 123.4 8.2 76 276-352 24-106 (114)
305 2e5g_A U6 snRNA-specific termi 99.4 1.4E-12 4.9E-17 116.6 9.0 77 276-353 7-83 (94)
306 3d2w_A TAR DNA-binding protein 99.4 1.3E-12 4.6E-17 116.3 8.6 76 189-268 8-85 (89)
307 2diu_A KIAA0430 protein; struc 99.4 1.9E-12 6.3E-17 116.4 9.4 74 191-269 7-86 (96)
308 2cpy_A RNA-binding protein 12; 99.3 4.7E-13 1.6E-17 124.3 5.5 78 275-353 13-95 (114)
309 3egn_A RNA-binding protein 40; 99.3 1.4E-12 4.7E-17 125.7 9.0 80 276-355 44-133 (143)
310 2e5i_A Heterogeneous nuclear r 99.3 2.6E-12 8.8E-17 122.0 10.6 75 194-269 27-104 (124)
311 3egn_A RNA-binding protein 40; 99.3 1.5E-12 5.2E-17 125.4 9.2 81 189-269 42-132 (143)
312 1wez_A HnRNP H', FTP-3, hetero 99.3 9.8E-13 3.3E-17 120.2 7.0 76 276-353 14-93 (102)
313 2hgl_A HNRPF protein, heteroge 99.3 5.6E-13 1.9E-17 128.5 5.7 77 276-353 43-126 (136)
314 1iqt_A AUF1, heterogeneous nuc 99.3 4.8E-13 1.7E-17 114.1 4.5 70 279-349 1-75 (75)
315 2cpy_A RNA-binding protein 12; 99.3 7.2E-13 2.5E-17 123.1 5.4 79 188-267 11-94 (114)
316 2lcw_A RNA-binding protein FUS 99.0 1.2E-13 4E-18 128.5 0.0 79 276-354 6-97 (116)
317 1wez_A HnRNP H', FTP-3, hetero 99.3 1.9E-12 6.7E-17 118.2 8.1 79 188-268 11-93 (102)
318 3q2s_C Cleavage and polyadenyl 99.3 1E-12 3.4E-17 137.4 6.9 78 276-353 67-151 (229)
319 2hgn_A Heterogeneous nuclear r 99.3 6.1E-13 2.1E-17 128.7 4.7 119 230-353 2-124 (139)
320 2db1_A Heterogeneous nuclear r 99.3 1.4E-12 4.9E-17 122.1 7.1 76 276-352 16-98 (118)
321 1wf0_A TDP-43, TAR DNA-binding 99.3 1.1E-12 3.7E-17 115.8 5.8 78 190-269 3-80 (88)
322 1wf0_A TDP-43, TAR DNA-binding 99.3 1E-12 3.5E-17 116.0 5.5 77 276-354 4-80 (88)
323 1wel_A RNA-binding protein 12; 99.3 5.9E-13 2E-17 125.4 4.2 77 276-353 24-105 (124)
324 2lcw_A RNA-binding protein FUS 99.0 1.7E-13 5.8E-18 127.4 0.0 82 189-270 4-98 (116)
325 2bz2_A Negative elongation fac 99.3 2.8E-12 9.6E-17 120.9 8.3 76 276-354 38-113 (121)
326 3beg_B Splicing factor, argini 99.3 2.7E-12 9.1E-17 119.6 8.1 72 190-263 14-85 (115)
327 2dnn_A RNA-binding protein 12; 99.3 3.6E-12 1.2E-16 118.2 8.9 74 276-351 15-92 (109)
328 2xs2_A Deleted in azoospermia- 99.3 7.2E-13 2.5E-17 120.1 4.1 79 189-269 6-88 (102)
329 2lmi_A GRSF-1, G-rich sequence 99.3 9.4E-13 3.2E-17 120.9 4.9 78 275-353 9-93 (107)
330 1wel_A RNA-binding protein 12; 99.3 6.9E-13 2.4E-17 125.0 4.1 77 189-266 22-103 (124)
331 1iqt_A AUF1, heterogeneous nuc 99.3 9.6E-13 3.3E-17 112.3 4.5 70 194-264 1-75 (75)
332 2hzc_A Splicing factor U2AF 65 99.3 4.2E-12 1.4E-16 111.3 8.3 71 276-348 5-86 (87)
333 2voo_A Lupus LA protein; RNA-b 99.3 4.5E-12 1.5E-16 129.0 9.8 113 238-351 63-186 (193)
334 3q2s_C Cleavage and polyadenyl 99.3 2E-12 7E-17 135.0 7.4 76 191-266 67-149 (229)
335 2db1_A Heterogeneous nuclear r 99.3 1.7E-12 5.8E-17 121.6 5.9 76 190-266 15-97 (118)
336 2f3j_A RNA and export factor b 99.3 5E-12 1.7E-16 127.0 9.5 78 276-353 87-168 (177)
337 2lmi_A GRSF-1, G-rich sequence 99.3 1.9E-12 6.4E-17 118.9 5.7 77 189-266 8-91 (107)
338 3u1l_A PRE-mRNA-splicing facto 99.3 6.8E-12 2.3E-16 131.8 10.7 102 252-354 109-231 (240)
339 2hzc_A Splicing factor U2AF 65 99.3 4.9E-12 1.7E-16 110.8 8.0 72 190-263 4-86 (87)
340 2f3j_A RNA and export factor b 99.3 4.9E-12 1.7E-16 127.1 9.0 79 189-267 85-167 (177)
341 2bz2_A Negative elongation fac 99.3 5.1E-12 1.7E-16 119.1 8.5 78 189-269 36-113 (121)
342 2xs2_A Deleted in azoospermia- 99.3 1.8E-12 6.1E-17 117.5 5.1 77 275-353 7-87 (102)
343 2hgl_A HNRPF protein, heteroge 99.3 1.9E-12 6.4E-17 124.8 5.3 77 189-266 41-124 (136)
344 2hgn_A Heterogeneous nuclear r 99.2 3.9E-12 1.3E-16 123.1 5.4 79 188-268 42-124 (139)
345 2dnn_A RNA-binding protein 12; 99.2 5.6E-12 1.9E-16 116.9 6.1 74 191-266 15-92 (109)
346 2dnl_A Cytoplasmic polyadenyla 99.2 1E-11 3.5E-16 115.3 7.6 78 276-356 7-92 (114)
347 3u1l_A PRE-mRNA-splicing facto 99.2 1.1E-11 3.7E-16 130.3 8.6 82 189-271 131-233 (240)
348 2hgm_A HNRPF protein, heteroge 99.2 1.3E-11 4.4E-16 117.4 7.7 76 189-266 39-120 (126)
349 2pe8_A Splicing factor 45; RRM 99.2 2.8E-11 9.6E-16 111.4 9.6 76 276-351 7-93 (105)
350 2dha_A FLJ20171 protein; RRM d 99.2 3.4E-12 1.2E-16 120.9 3.4 75 277-352 23-105 (123)
351 2dit_A HIV TAT specific factor 99.2 4.8E-11 1.6E-15 110.5 10.7 79 275-353 13-103 (112)
352 2hgm_A HNRPF protein, heteroge 99.2 1.1E-11 3.6E-16 118.1 6.1 75 276-352 41-121 (126)
353 2dha_A FLJ20171 protein; RRM d 99.2 6.5E-12 2.2E-16 119.0 4.5 75 190-265 21-103 (123)
354 2dit_A HIV TAT specific factor 99.2 6.1E-11 2.1E-15 109.8 10.7 83 187-269 10-104 (112)
355 2dnl_A Cytoplasmic polyadenyla 99.2 2.8E-11 9.5E-16 112.3 8.3 72 190-264 6-85 (114)
356 3pgw_S U1-70K; protein-RNA com 99.2 2.8E-11 9.7E-16 137.9 9.2 80 189-268 99-183 (437)
357 2pe8_A Splicing factor 45; RRM 99.2 7.8E-11 2.7E-15 108.4 9.2 77 190-266 6-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.2 2.5E-11 8.7E-16 115.1 6.0 77 278-354 3-98 (136)
359 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.3E-10 4.6E-15 106.0 8.2 67 286-354 26-92 (100)
360 2voo_A Lupus LA protein; RNA-b 99.1 1.6E-10 5.5E-15 117.5 8.7 75 191-266 108-186 (193)
361 2d9o_A DNAJ (HSP40) homolog, s 99.1 6.9E-10 2.4E-14 101.3 11.9 75 192-268 10-91 (100)
362 3v4m_A Splicing factor U2AF 65 99.1 2.6E-10 8.8E-15 104.9 9.1 77 276-352 4-97 (105)
363 2j8a_A Histone-lysine N-methyl 99.1 7.6E-11 2.6E-15 111.8 4.8 72 193-264 3-93 (136)
364 3v4m_A Splicing factor U2AF 65 99.0 4.3E-10 1.5E-14 103.4 7.9 76 190-265 3-95 (105)
365 1jmt_A Splicing factor U2AF 35 99.0 1.2E-10 4.1E-15 106.9 4.2 68 282-349 20-103 (104)
366 3tht_A Alkylated DNA repair pr 99.0 6E-10 2.1E-14 122.9 8.9 74 276-350 17-97 (345)
367 3tht_A Alkylated DNA repair pr 99.0 6.1E-10 2.1E-14 122.8 8.9 75 189-264 15-96 (345)
368 3ue2_A Poly(U)-binding-splicin 99.0 1E-09 3.5E-14 103.1 7.9 75 277-351 20-108 (118)
369 3s6e_A RNA-binding protein 39; 98.9 1.6E-09 5.5E-14 101.2 8.5 76 276-351 6-92 (114)
370 1jmt_A Splicing factor U2AF 35 98.9 3.1E-10 1.1E-14 104.1 3.6 68 197-264 20-103 (104)
371 3ue2_A Poly(U)-binding-splicin 98.8 4.2E-09 1.4E-13 99.0 7.8 75 191-265 19-107 (118)
372 3s6e_A RNA-binding protein 39; 98.8 9.3E-09 3.2E-13 96.0 8.1 76 190-265 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 98.7 2.3E-08 7.7E-13 89.2 8.3 74 275-352 5-86 (91)
374 1uw4_A UPF3X; nonsense mediate 98.6 1E-07 3.5E-12 85.3 8.5 84 695-780 2-88 (91)
375 1owx_A Lupus LA protein, SS-B, 98.6 1.6E-07 5.5E-12 88.4 9.8 76 276-352 17-96 (121)
376 1ufw_A Synaptojanin 2; RNP dom 98.5 8.2E-08 2.8E-12 86.0 4.9 74 274-351 12-94 (95)
377 2l08_A Regulator of nonsense t 98.4 1.1E-07 3.8E-12 85.7 3.2 84 695-780 10-96 (97)
378 1owx_A Lupus LA protein, SS-B, 98.4 1.2E-06 4.2E-11 82.4 9.5 73 190-263 16-92 (121)
379 3dxb_A Thioredoxin N-terminall 98.3 7.2E-07 2.5E-11 91.8 7.7 63 289-351 141-212 (222)
380 2dnr_A Synaptojanin-1; RRM dom 98.3 1.2E-06 4.3E-11 78.0 7.0 73 190-266 5-85 (91)
381 3dxb_A Thioredoxin N-terminall 98.1 4.4E-06 1.5E-10 85.8 7.3 63 203-265 140-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.0 7.9E-06 2.7E-10 74.8 7.5 72 276-348 20-96 (117)
383 1ufw_A Synaptojanin 2; RNP dom 97.9 9.6E-06 3.3E-10 72.7 5.2 71 190-264 13-92 (95)
384 2l9w_A U4/U6 snRNA-associated- 97.7 6.2E-05 2.1E-09 69.0 6.5 72 190-262 19-95 (117)
385 2dhx_A Poly (ADP-ribose) polym 97.5 0.00061 2.1E-08 61.9 10.3 83 277-363 8-95 (104)
386 2dhx_A Poly (ADP-ribose) polym 97.5 0.00089 3E-08 60.8 11.1 88 191-290 7-99 (104)
387 1wey_A Calcipressin 1; structu 96.9 0.0012 4.3E-08 60.0 5.9 75 278-353 6-85 (104)
388 1wey_A Calcipressin 1; structu 96.4 0.0035 1.2E-07 57.0 5.3 75 192-267 5-84 (104)
389 1wwh_A Nucleoporin 35, nucleop 96.2 0.013 4.3E-07 54.8 8.3 74 274-350 21-95 (119)
390 1uw4_A UPF3X; nonsense mediate 95.0 0.057 2E-06 48.1 7.3 64 193-256 2-72 (91)
391 1whv_A Poly(A)-specific ribonu 94.4 0.064 2.2E-06 48.2 6.1 53 279-335 18-70 (100)
392 1whv_A Poly(A)-specific ribonu 94.1 0.096 3.3E-06 47.1 6.5 55 192-250 16-70 (100)
393 3ctr_A Poly(A)-specific ribonu 93.7 0.048 1.7E-06 49.1 3.9 53 279-335 8-60 (101)
394 3ctr_A Poly(A)-specific ribonu 93.3 0.069 2.3E-06 48.1 4.3 55 193-251 7-61 (101)
395 1wwh_A Nucleoporin 35, nucleop 93.1 0.24 8E-06 46.2 7.7 70 191-263 23-93 (119)
396 3p3d_A Nucleoporin 53; structu 93.0 0.075 2.6E-06 50.3 4.2 72 278-351 8-98 (132)
397 3pq1_A Poly(A) RNA polymerase; 91.6 0.07 2.4E-06 60.8 2.6 56 277-333 53-108 (464)
398 2l08_A Regulator of nonsense t 91.5 0.34 1.2E-05 43.6 6.5 63 278-340 10-79 (97)
399 3pq1_A Poly(A) RNA polymerase; 91.3 0.084 2.9E-06 60.2 2.8 56 191-247 52-107 (464)
400 3p3d_A Nucleoporin 53; structu 81.7 0.97 3.3E-05 42.7 3.6 71 192-264 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 68.1 10 0.00035 43.6 8.2 57 192-252 440-496 (507)
402 3d45_A Poly(A)-specific ribonu 58.9 18 0.00061 41.6 8.0 54 278-335 441-494 (507)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.9e-31 Score=281.53 Aligned_cols=237 Identities=16% Similarity=0.231 Sum_probs=197.1
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcEEEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCCCCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPYGE 189 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~~~~~~ 189 (858)
.+.++|++||.++++.++.++|+.+|-+.+.+ ...++++++.|.+...+.. +.+..+.+....+.. .
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~Gi~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~-----~ 92 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL-----Q 92 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE-----C
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe-----c
Confidence 47899999999999999999999999324443 4567889999988776642 222333332222221 2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+..|+|..+.|++|.|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999998874 5668999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccceeeeCCCCCC-chhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCcc
Q 003007 265 IPKDNPSDKDLNQGTLVVFNLDPSV-SNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI 339 (858)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~v-TeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i 339 (858)
.++.... ......+|||+|||.++ |+++|+++|++||.|.+|++ ++.++|+|||+|.+.++|.+|++.|||..+
T Consensus 173 ~~~~~~~-~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTP-ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCT-TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCc-ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 8765432 33456789999999995 99999999999999999986 345789999999999999999999999999
Q ss_pred CCceEEEEecCCCcccchhhh
Q 003007 340 AGKRIKLEPSRPGGARRNLML 360 (858)
Q Consensus 340 ~Gr~I~V~~s~~~~~r~~~~~ 360 (858)
.|++|+|.|+.++..++..+.
T Consensus 252 ~g~~l~v~~a~~~~~~~~~~~ 272 (284)
T 3smz_A 252 GGSHLRVSFCAPGPPGRSMLA 272 (284)
T ss_dssp TTEECEEEECCSSSCHHHHHH
T ss_pred CCeEEEEEEecCCCcccchhh
Confidence 999999999999887655443
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.3e-30 Score=278.05 Aligned_cols=230 Identities=18% Similarity=0.285 Sum_probs=187.3
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCccc---ccccCCCCccccCCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLL---HYSVPNGAGTVAGEHPY 187 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~~---~~~l~n~v~~~sg~~~~ 187 (858)
.+.++|++||.++++.++.++|+.+|.| .|..+.. ..++++++.|.+...+.... +..+.+....+.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~----- 113 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAITKTHKVVGQNEIIVS----- 113 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEE-----
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEE-----
Confidence 5889999999999999999999999987 4444432 24789999999887665432 222222211111
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG-~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
....++|||+|||.++++++|+++|++|| +|..|++ .++++|||||+|.+.++|++|+..|+|..+.|++|.|.
T Consensus 114 -~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 -HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp -ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred -ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 23579999999999999999999999999 9999985 34689999999999999999999999999999999999
Q ss_pred ccCCCCCCCC---CCCCccceeeeCCCCC-CchhHHHHhhcccCceEEEEeC------CCCccEEEEEEcCHHHHHHHHH
Q 003007 263 FSIPKDNPSD---KDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALK 332 (858)
Q Consensus 263 ~a~pk~~~~~---~~~~~~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~irit------~~srG~aFVeF~d~e~A~kAl~ 332 (858)
|+.++..... ......+|||+|||.+ +|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~- 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL- 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-
Confidence 9987654322 2234578999999999 9999999999999999999873 567899999999999999999
Q ss_pred HhCCCccCCceEEEEecCCC
Q 003007 333 SLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.|||..|.|++|+|.|++++
T Consensus 272 ~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp GGTTEEETTEEEEEEECCCC
T ss_pred HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.96 E-value=1.1e-29 Score=261.96 Aligned_cols=164 Identities=19% Similarity=0.352 Sum_probs=146.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.+.++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46799999999999999999999999999999984 5778999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003007 265 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (858)
Q Consensus 265 ~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (858)
...... ......+|||+|||.++|+++|+++|++||.|++|++. ..++|||||+|.+.++|++||+.|||..|.|
T Consensus 93 ~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 93 QRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CCCTHH--HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cccccc--cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 654321 12244689999999999999999999999999999873 4468999999999999999999999999999
Q ss_pred ceEEEEecCCCccc
Q 003007 342 KRIKLEPSRPGGAR 355 (858)
Q Consensus 342 r~I~V~~s~~~~~r 355 (858)
++|+|++++++..+
T Consensus 171 ~~i~V~~a~~~~~~ 184 (213)
T 4f02_A 171 RKVFVGRFKSRKER 184 (213)
T ss_dssp EECEEEECCCHHHH
T ss_pred EEEEEEEcCCCccc
Confidence 99999999886544
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-28 Score=239.56 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=143.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
|+|||+|||.++++++|+++|++||+|.++++ .++++|||||+|.+.++|++|++.|++..+.|++|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 68999999999999999999999999999985 36688999999999999999999999999999999999997665
Q ss_pred CCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003007 269 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (858)
Q Consensus 269 ~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (858)
.. ......+|||+|||.++|+++|+++|++||.|.++++ ++.++|+|||+|.+.++|.+|++.|||..+.|++
T Consensus 81 ~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 81 QS--SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CC--CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CC--CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 32 3345679999999999999999999999999999976 3567899999999999999999999999999999
Q ss_pred EEEEecCC
Q 003007 344 IKLEPSRP 351 (858)
Q Consensus 344 I~V~~s~~ 351 (858)
|+|+|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999864
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=5.1e-28 Score=237.14 Aligned_cols=155 Identities=23% Similarity=0.429 Sum_probs=142.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
++++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5799999999999999999999999999999984 45688999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
++.. .....+|||+|||.++++++|+++|++||.|..+++ ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 82 PGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp CCSS----TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCcc----cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 6543 335678999999999999999999999999999986 3456899999999999999999999999998
Q ss_pred C--ceEEEEec
Q 003007 341 G--KRIKLEPS 349 (858)
Q Consensus 341 G--r~I~V~~s 349 (858)
| ++|+|+||
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 8 99999985
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=6.5e-28 Score=235.45 Aligned_cols=155 Identities=25% Similarity=0.441 Sum_probs=140.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
++++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4689999999999999999999999999999874 56788999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
+.. ......+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 81 ~~~----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 156 (167)
T 1fxl_A 81 PSS----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS 156 (167)
T ss_dssp CCC----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred CCc----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccC
Confidence 653 2335578999999999999999999999999999987 3446899999999999999999999999999
Q ss_pred Cce--EEEEec
Q 003007 341 GKR--IKLEPS 349 (858)
Q Consensus 341 Gr~--I~V~~s 349 (858)
|+. |+|+||
T Consensus 157 g~~~~i~v~~A 167 (167)
T 1fxl_A 157 GATEPITVKFA 167 (167)
T ss_dssp TCSSCCEEEEC
T ss_pred CCccceEEEeC
Confidence 964 888875
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.95 E-value=1.2e-27 Score=244.19 Aligned_cols=163 Identities=20% Similarity=0.387 Sum_probs=143.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4589999999999999999999999999999986 56789999999999999999999999999999999999876
Q ss_pred CCCCCC-------CCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHH
Q 003007 266 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 333 (858)
Q Consensus 266 pk~~~~-------~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~ 333 (858)
...... .......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 543211 01224468999999999999999999999999999987 345689999999999999999999
Q ss_pred hCCCccCCceEEEEecCCCc
Q 003007 334 LNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 334 LnG~~i~Gr~I~V~~s~~~~ 353 (858)
|||..|.|+.|+|.++.++.
T Consensus 187 l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCS
T ss_pred ccCCEeCCcEEEEEEecCCC
Confidence 99999999999999998764
No 8
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=2.9e-27 Score=246.40 Aligned_cols=164 Identities=26% Similarity=0.355 Sum_probs=147.2
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 189 ~~~s~tLfV~NLP~-~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
..++++|||+|||. ++++++|+++|++||+|..|++....+|||||+|.+.++|++|++.|++..+.|++|.|.|+.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35679999999999 99999999999999999999976666899999999999999999999999999999999998754
Q ss_pred CCCCCC-------------------------------CCCccceeeeCCCCCCchhHHHHhhcccC-ceEEEEeCCCCcc
Q 003007 268 DNPSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRH 315 (858)
Q Consensus 268 ~~~~~~-------------------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG-~I~~irit~~srG 315 (858)
.....+ .....+|||+|||.++++++|+++|++|| .|.+|++.+..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 211100 11246899999999999999999999999 9999999777899
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCCC
Q 003007 316 HKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 352 (858)
Q Consensus 316 ~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~~~ 352 (858)
+|||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999864
No 9
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=2.5e-27 Score=253.33 Aligned_cols=178 Identities=19% Similarity=0.317 Sum_probs=163.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 269 (858)
.++++|||+|||.++|+++|+++|++|| |..|++ ++++|||||+|.+.++|++|+..|++..+.|++|.|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 3579999999999999999999999999 999877 7889999999999999999999999999999999999864
Q ss_pred CCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003007 270 PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (858)
Q Consensus 270 ~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (858)
...+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|.+|++.|+|..+.|+.|
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 167 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTL 167 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 2358999999999999999999999999999975 45578999999999999999999999999999999
Q ss_pred EEEecCCCcc-------cchhhhccchhh-cHHHHHHHHhhcC
Q 003007 345 KLEPSRPGGA-------RRNLMLQLNQEL-EQDESRILQHQVG 379 (858)
Q Consensus 345 ~V~~s~~~~~-------r~~~~~ql~~~~-~~~~l~~~f~~~G 379 (858)
.|.++.++.. +..++.++...+ +++++..+|..||
T Consensus 168 ~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 168 YVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp EEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred EEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 9999987642 356889999996 8999999999887
No 10
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.4e-27 Score=252.04 Aligned_cols=164 Identities=23% Similarity=0.444 Sum_probs=146.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr----~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
...++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34678999999999999999977 89999999999985 6789999999999999999999999999999999999
Q ss_pred cccCCCCCC-----------------------------------------------------------------------
Q 003007 262 HFSIPKDNP----------------------------------------------------------------------- 270 (858)
Q Consensus 262 ~~a~pk~~~----------------------------------------------------------------------- 270 (858)
.|+..+...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998654420
Q ss_pred ------------------------------------CCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCc
Q 003007 271 ------------------------------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKR 314 (858)
Q Consensus 271 ------------------------------------~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~sr 314 (858)
........+|||+|||.++|+++|+++|++||.|++|++....+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 01112346799999999999999999999999999999987777
Q ss_pred cEEEEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCC
Q 003007 315 HHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRP 351 (858)
Q Consensus 315 G~aFVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~~ 351 (858)
|||||+|.+.++|.+|++.|||..+. |+.|+|+|++.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 99999999999999999999999999 99999999863
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=2.5e-27 Score=238.36 Aligned_cols=166 Identities=19% Similarity=0.374 Sum_probs=140.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.....++|||+|||.++|+++|+++|++||+|..|++ +++++|||||+|.+.++|++|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 4456799999999999999999999999999999874 466899999999999999999985 8999999999999
Q ss_pred ccCCCCCCCC--CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhC
Q 003007 263 FSIPKDNPSD--KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 263 ~a~pk~~~~~--~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
++.++..... ......+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 9876543221 2234578999999999999999999999999999986 456789999999999999999986 7
Q ss_pred CCccCCceEEEEecCCCccc
Q 003007 336 RSDIAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 336 G~~i~Gr~I~V~~s~~~~~r 355 (858)
|..+.|+.|.|+++.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999887643
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=5.5e-28 Score=239.43 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=144.2
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE----EeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv----~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...+.++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++ |++..+.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 34567999999999999999999999999864331 1367899999999999999999995 999999999999999
Q ss_pred cCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce
Q 003007 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 343 (858)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~ 343 (858)
+.++... ......+|||+|||.++|+++|+++|++||.|..+..++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 88 ~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 88 PKGRDSK--KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp CCCSSCS--TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred CCCcccc--ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9876533 23356799999999999999999999999999988667788999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 003007 344 IKLEPSRPG 352 (858)
Q Consensus 344 I~V~~s~~~ 352 (858)
|+|+|++++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 999999875
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=2.8e-27 Score=243.55 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=138.0
Q ss_pred CCcEEEEeCCC-CCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003007 191 PSRTLFVRNIN-SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 191 ~s~tLfV~NLP-~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 269 (858)
++++|||+||| .++++++|+++|++||+|.+|++....+|||||+|.+.++|++|++.|+|..+.|++|+|.|+..+..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 57899999999 89999999999999999999998777899999999999999999999999999999999999864321
Q ss_pred CCC------------C---------------------CCCccceeeeCCCCCCchhHHHHhhcccCce--EEEEeCC---
Q 003007 270 PSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEV--KEIRETP--- 311 (858)
Q Consensus 270 ~~~------------~---------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I--~~irit~--- 311 (858)
... + ..+..+|||+|||+++|+++|+++|++||.| .++++..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~ 162 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKS 162 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCS
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCC
Confidence 000 0 0123579999999999999999999999999 8888743
Q ss_pred CCccEEEEEEcCHHHHHHHHHHhCCCccCCc----eEEEEec
Q 003007 312 HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK----RIKLEPS 349 (858)
Q Consensus 312 ~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr----~I~V~~s 349 (858)
.++|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 163 ~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 163 ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 3469999999999999999999999999885 5777664
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=3.3e-27 Score=232.56 Aligned_cols=153 Identities=16% Similarity=0.345 Sum_probs=139.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~f----G-------~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L 259 (858)
+.++|||+|||.++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|++|+ .|++..+.|++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 56999999999999999999999999 7 7888764 567999999999999999999 899999999999
Q ss_pred cccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHh
Q 003007 260 DIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 260 ~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~L 334 (858)
.|.++.+...+ ....+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|
T Consensus 81 ~v~~~~~~~~~----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 81 KIRRPHDYQPL----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp EEECCSSCCCC----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eecCCcccCCC----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998654322 23578999999999999999999999999999987 4556899999999999999999999
Q ss_pred CCCccCCceEEEEec
Q 003007 335 NRSDIAGKRIKLEPS 349 (858)
Q Consensus 335 nG~~i~Gr~I~V~~s 349 (858)
||..+.|++|+|+++
T Consensus 157 ~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEETTEECEEEEC
T ss_pred CCCEECCeEEEEEeC
Confidence 999999999999987
No 15
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.2e-27 Score=240.32 Aligned_cols=162 Identities=26% Similarity=0.363 Sum_probs=145.7
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003007 191 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 191 ~s~tLfV~NLP~-~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 269 (858)
.+++|||+|||. ++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..+.|++|.|.|+.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 368999999999 9999999999999999999987666689999999999999999999999999999999999875421
Q ss_pred CCCC-------------------------------CCCccceeeeCCCCCCchhHHHHhhcccC-ceEEEEeCCCCccEE
Q 003007 270 PSDK-------------------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRETPHKRHHK 317 (858)
Q Consensus 270 ~~~~-------------------------------~~~~~tLfV~NLp~~vTeedL~~~Fs~fG-~I~~irit~~srG~a 317 (858)
...+ ..+..+|||+|||..+|+++|+++|++|| .|.+|++.+..+|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~a 161 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 161 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCE
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEE
Confidence 1100 11256899999999999999999999999 999999977779999
Q ss_pred EEEEcCHHHHHHHHHHhCCCccC-CceEEEEecCCC
Q 003007 318 FIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSRPG 352 (858)
Q Consensus 318 FVeF~d~e~A~kAl~~LnG~~i~-Gr~I~V~~s~~~ 352 (858)
||+|.+.++|.+|++.|||..+. |++|+|.|++++
T Consensus 162 fV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 162 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 99999999999999999999999 999999999864
No 16
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.5e-27 Score=233.78 Aligned_cols=155 Identities=20% Similarity=0.432 Sum_probs=139.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
++++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|+.. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999984 467899999999999999999994 678999999999987
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
++. ......+|||+|||.++|+++|+++|++||.|.++++ ++.++|||||+|.+.++|.+|++ ++|..+.
T Consensus 80 ~~~----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 80 PRD----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp CHH----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred chh----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 543 2234568999999999999999999999999999986 35678999999999999999998 8999999
Q ss_pred CceEEEEecCCC
Q 003007 341 GKRIKLEPSRPG 352 (858)
Q Consensus 341 Gr~I~V~~s~~~ 352 (858)
|++|+|+++.++
T Consensus 155 g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 DRKIEIKRAEPR 166 (167)
T ss_dssp SSCEEEEECCCC
T ss_pred CeEEEEeecCCC
Confidence 999999999875
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=7e-27 Score=230.21 Aligned_cols=157 Identities=20% Similarity=0.405 Sum_probs=137.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CC--CcccEEEEEEcCHHHHHHHHHHhcCCccc---ccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC--KHRGFVMISYYDIRAARTAMRALQNKPLR---RRKLD 260 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~--ksrG~aFV~F~d~e~A~~Al~~Lng~~l~---gr~L~ 260 (858)
..++|||+|||.++++++|+++|++||+|.+|++ ++ +++|||||+|.+.++|++|++.|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4689999999999999999999999999999874 22 78999999999999999999999998876 57777
Q ss_pred ccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCC
Q 003007 261 IHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 336 (858)
Q Consensus 261 V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG 336 (858)
+.++.+... ......+|||+|||.++|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|.+|++.|||
T Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN---NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC---SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc---ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655432 2335679999999999999999999999999999987 344689999999999999999999999
Q ss_pred CccC---CceEEEEecC
Q 003007 337 SDIA---GKRIKLEPSR 350 (858)
Q Consensus 337 ~~i~---Gr~I~V~~s~ 350 (858)
..+. |++|+|+|++
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8776 4999999974
No 18
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=8.1e-27 Score=234.96 Aligned_cols=162 Identities=16% Similarity=0.324 Sum_probs=142.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~f----G-------~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L 259 (858)
.+++|||+|||.++++++|+++|++| | .|..+.+ ++++|||||+|.+.++|++|+ .|+|..|.|++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-ETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 46999999999999999999999999 5 6777754 678999999999999999999 899999999999
Q ss_pred cccccCCCCCCCC----------------CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEE
Q 003007 260 DIHFSIPKDNPSD----------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKF 318 (858)
Q Consensus 260 ~V~~a~pk~~~~~----------------~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aF 318 (858)
.|.++.+...... ......+|||+|||.++++++|+++|++||.|.+|++ ++.++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 9999876532111 1134579999999999999999999999999999986 445689999
Q ss_pred EEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 319 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 319 VeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
|+|.+.++|++|++.|||..+.|+.|+|++++++..
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999999988753
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.3e-26 Score=248.67 Aligned_cols=182 Identities=20% Similarity=0.267 Sum_probs=157.4
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~---~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.+.++|||+|||.++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 3455678999999999999999999999999999999852 2258999999999999999995 99999999999999
Q ss_pred ccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccC-ceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCC
Q 003007 263 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRS 337 (858)
Q Consensus 263 ~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG-~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~ 337 (858)
++ ...+|||+|||.++|+++|+++|+.|| .|..|++. +.++|||||+|.+.++|.+|++.|+|.
T Consensus 114 ~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 114 HL-----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EC-----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EC-----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 86 256899999999999999999999999 99999874 356899999999999999999999999
Q ss_pred ccCCceEEEEecCCCcc-----------cchhhhccchh-hcHHHHHHHHhhcC
Q 003007 338 DIAGKRIKLEPSRPGGA-----------RRNLMLQLNQE-LEQDESRILQHQVG 379 (858)
Q Consensus 338 ~i~Gr~I~V~~s~~~~~-----------r~~~~~ql~~~-~~~~~l~~~f~~~G 379 (858)
.+.|+.|.|.++.+... +..++.++... +++++++.+|.+||
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp EETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred EeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 99999999999876542 34678899999 99999999999997
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=7.2e-25 Score=232.85 Aligned_cols=156 Identities=28% Similarity=0.413 Sum_probs=141.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
..+.++|||+|||.++|+++|+++|++||.|..|++ .+++|||||+|.+.++|++|+..|+|..+.|++|.|.|+.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i-~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-- 95 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI-NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH-- 95 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC--
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc--
Confidence 345689999999999999999999999999999976 56799999999999999999999999999999999999864
Q ss_pred CCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhC-CCccC---
Q 003007 269 NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIA--- 340 (858)
Q Consensus 269 ~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~Ln-G~~i~--- 340 (858)
..+|||+|||..+|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|.+|++.|| |..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 167 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTT 167 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCC
Confidence 458999999999999999999999999999976 45678999999999999999999995 44444
Q ss_pred CceEEEEecCCCccc
Q 003007 341 GKRIKLEPSRPGGAR 355 (858)
Q Consensus 341 Gr~I~V~~s~~~~~r 355 (858)
+++|.|+++.+...+
T Consensus 168 ~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 168 PRPVIVEPMEQFDDE 182 (261)
T ss_dssp CCBCEEEECCCEESS
T ss_pred CceEEEeeccccCcc
Confidence 899999999876543
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=3.4e-19 Score=173.54 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=112.9
Q ss_pred CCcccEEEEEEcCHHHHHHHHHHh-cCCccccccccccccCCCC------------CCCCCCCCccceeeeCCCCCCchh
Q 003007 226 CKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSIPKD------------NPSDKDLNQGTLVVFNLDPSVSNE 292 (858)
Q Consensus 226 ~ksrG~aFV~F~d~e~A~~Al~~L-ng~~l~gr~L~V~~a~pk~------------~~~~~~~~~~tLfV~NLp~~vTee 292 (858)
.+.+|+++|+|.+.++|++|++++ +|..+.| ++.+.++..+. .........++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 357899999999999999999999 9999999 99999886521 112223455799999999999999
Q ss_pred HHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 293 DLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 293 dL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
+|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999987789999999999999999999999999999999999998763
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2.8e-18 Score=168.02 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=102.8
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHhcCCccc-------cccccccccCCCC--CCCCCCCCccceeeeCCCCCCchhHHH
Q 003007 225 ACKHRGFVMISYYDIRAARTAMRALQNKPLR-------RRKLDIHFSIPKD--NPSDKDLNQGTLVVFNLDPSVSNEDLR 295 (858)
Q Consensus 225 ~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~-------gr~L~V~~a~pk~--~~~~~~~~~~tLfV~NLp~~vTeedL~ 295 (858)
..+++|||||+|.+.++|++|++.+++.... +............ ..........+|||+|||.++|+++|+
T Consensus 9 ~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 88 (158)
T 2kn4_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLR 88 (158)
T ss_dssp CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHH
T ss_pred CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHH
Confidence 3468999999999999999999988753322 2222222111111 111223346799999999999999999
Q ss_pred HhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 296 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 296 ~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++++..
T Consensus 89 ~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 89 RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999987 456899999999999999999999999999999999999987653
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.75 E-value=2.2e-18 Score=177.35 Aligned_cols=155 Identities=13% Similarity=0.236 Sum_probs=123.5
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcc----cccccCCCCccccCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPNGAGTVAGEHP 186 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~----~~~~l~n~v~~~sg~~~ 186 (858)
.+.+||++||.+++|.++.++|+.+|.| .|..+..+...++++++.|.+...+... ....+.+..........
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 4689999999999999999999999987 6666777788899999999987665422 22222222111111111
Q ss_pred ---CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 187 ---YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 187 ---~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
......++|||+|||.++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|+|..|.|++|.
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~ 174 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 174 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 11224579999999999999999999999999999885 445799999999999999999999999999999999
Q ss_pred ccccCCCC
Q 003007 261 IHFSIPKD 268 (858)
Q Consensus 261 V~~a~pk~ 268 (858)
|.|+.++.
T Consensus 175 V~~a~~~~ 182 (213)
T 4f02_A 175 VGRFKSRK 182 (213)
T ss_dssp EEECCCHH
T ss_pred EEEcCCCc
Confidence 99998753
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=3.3e-18 Score=159.68 Aligned_cols=103 Identities=16% Similarity=0.317 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
.+++|||+|||+++++++|+++|++||.|.+|++ ...++|||||+|.+.++|++|++.|++..|.|++|.|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4679999999999999999999999999999885 3457899999999999999999999999999999999999876
Q ss_pred CCCCC----CCCCccceeeeCCCCCCchhH
Q 003007 268 DNPSD----KDLNQGTLVVFNLDPSVSNED 293 (858)
Q Consensus 268 ~~~~~----~~~~~~tLfV~NLp~~vTeed 293 (858)
..... ......+|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 54322 122345899999999999874
No 25
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1.5e-17 Score=169.32 Aligned_cols=157 Identities=13% Similarity=0.224 Sum_probs=124.0
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP 186 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~~~ 186 (858)
.+.++|++||.++++.++.++|+.+|.| .+..+..+...++++++.|.+...+.. +.+..+.+....+.....
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 6789999999999999999999999987 444555567788999999998776653 223333333222211111
Q ss_pred C------------CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHh
Q 003007 187 Y------------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 249 (858)
Q Consensus 187 ~------------~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~L 249 (858)
. .....++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|.+|++.|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 108 IGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp CGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 1 1235589999999999999999999999999999885 4567999999999999999999999
Q ss_pred cCCccccccccccccCCCCCC
Q 003007 250 QNKPLRRRKLDIHFSIPKDNP 270 (858)
Q Consensus 250 ng~~l~gr~L~V~~a~pk~~~ 270 (858)
+|..|.|++|.|.|+.++..+
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSST
T ss_pred cCCEeCCcEEEEEEecCCCCC
Confidence 999999999999999876543
No 26
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-17 Score=160.72 Aligned_cols=150 Identities=19% Similarity=0.278 Sum_probs=119.6
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----ccccccCCCCccc---cCC
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTV---AGE 184 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~---sg~ 184 (858)
+.++|++||.++++.++.++|+.+|.| .+..+. .+..++++++.|.+...+.. +.+..+.+....+ ...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 368999999999999999999999987 343333 45678999999998776642 2233333322221 112
Q ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccc
Q 003007 185 HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 259 (858)
Q Consensus 185 ~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L 259 (858)
......+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 2234556789999999999999999999999999999875 46789999999999999999999999999999999
Q ss_pred cccccC
Q 003007 260 DIHFSI 265 (858)
Q Consensus 260 ~V~~a~ 265 (858)
.|.|+.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 27
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.73 E-value=2.3e-17 Score=161.24 Aligned_cols=150 Identities=20% Similarity=0.311 Sum_probs=120.6
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCCC-C
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEH-P 186 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~~-~ 186 (858)
+.++|++||.++++.++.++|+.+|.| .+..+..++..++++++.|.+...+.. +.+..+.+....+.... .
T Consensus 4 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 4 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 689999999999999999999999987 444455567788999999998776653 23333333322222222 2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccc--ccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKL 259 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g--r~L 259 (858)
....+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|.+|++.|+|..+.| ++|
T Consensus 84 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l 163 (168)
T 1b7f_A 84 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPL 163 (168)
T ss_dssp SSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEE
Confidence 23456789999999999999999999999999999874 56678999999999999999999999999987 999
Q ss_pred ccccc
Q 003007 260 DIHFS 264 (858)
Q Consensus 260 ~V~~a 264 (858)
+|.||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99885
No 28
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=3.4e-18 Score=167.21 Aligned_cols=153 Identities=18% Similarity=0.273 Sum_probs=120.1
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCcccc--cccCCCCccccCCCC-C
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLH--YSVPNGAGTVAGEHP-Y 187 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~~~--~~l~n~v~~~sg~~~-~ 187 (858)
.+.++|++||.++++.++.++|+.+|.| .+..+...+..++++++.|.+...+..... ..+.+....+....+ .
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchh
Confidence 3689999999999999999999999987 444455567888999999988766643221 111111111111111 1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++ +++..+.|++|.|.
T Consensus 83 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 83 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 1234679999999999999999999999999999884 46789999999999999999998 89999999999999
Q ss_pred ccCCC
Q 003007 263 FSIPK 267 (858)
Q Consensus 263 ~a~pk 267 (858)
|+.|+
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99875
No 29
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.72 E-value=2.8e-17 Score=164.82 Aligned_cols=156 Identities=17% Similarity=0.291 Sum_probs=118.7
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCccc---ccccCCCCcccc-----
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLL---HYSVPNGAGTVA----- 182 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~~~---~~~l~n~v~~~s----- 182 (858)
.+.++|++||.++++.++.++|+.+|.| .|..+......++++++.|.+...+.... ...+.+....+.
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCc
Confidence 5789999999999999999999999987 55666667778899999999876655322 112222111111
Q ss_pred --CCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc
Q 003007 183 --GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (858)
Q Consensus 183 --g~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~ 255 (858)
...+....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+.. ++..|.
T Consensus 93 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 93 EDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred ccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 111122335689999999999999999999999999999875 467899999999999999999986 799999
Q ss_pred cccccccccCCCCCC
Q 003007 256 RRKLDIHFSIPKDNP 270 (858)
Q Consensus 256 gr~L~V~~a~pk~~~ 270 (858)
|++|.|.|+.++...
T Consensus 172 G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 172 GHNCEVRKALSKQEM 186 (196)
T ss_dssp TEECEEEECC-----
T ss_pred CEEEEEEecCChhHh
Confidence 999999999887654
No 30
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.72 E-value=3.5e-17 Score=160.70 Aligned_cols=151 Identities=15% Similarity=0.272 Sum_probs=118.2
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccc--cccceEEeeecCccccCc----ccccccCCC---Cccc
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQES--LSMSMSKISISDSASGNG----LLHYSVPNG---AGTV 181 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~es--a~~a~~~v~~~~~~~a~~----~~~~~l~n~---v~~~ 181 (858)
.++++|++||.++++.++.++|+.+|.| .+..+.... ..++++++.|.+...+.. +.+..+..+ ....
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4789999999999999999999999987 555555444 778999999998776542 222222211 1111
Q ss_pred --cCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc
Q 003007 182 --AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (858)
Q Consensus 182 --sg~~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~ 255 (858)
...........++|||+|||.++++++|+++|++||.|..+++ .++++|||||+|.+.++|++|++.|+|..+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTM 162 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCC
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCccc
Confidence 1111223346689999999999999999999999999999885 4567999999999999999999999998876
Q ss_pred ---ccccccccc
Q 003007 256 ---RRKLDIHFS 264 (858)
Q Consensus 256 ---gr~L~V~~a 264 (858)
+++|.|.||
T Consensus 163 ~g~~~~l~V~~a 174 (175)
T 3nmr_A 163 EGCSSPMVVKFA 174 (175)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCCCCeEEEec
Confidence 499999997
No 31
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=5e-17 Score=158.16 Aligned_cols=150 Identities=21% Similarity=0.297 Sum_probs=119.5
Q ss_pred ceeeeccCCCCCChHHHHHHhcCCCcE---EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCCCC-
Q 003007 115 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP- 186 (858)
Q Consensus 115 ~el~V~~Lp~~~~E~el~~lFs~~G~i---~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~~~- 186 (858)
+.++|++||.++++.++.++|+.+|.| .+..+..++..++++++.|.+...+.. +.+..+.+....+....+
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 679999999999999999999999987 555566677788999999998776653 233333333222222222
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccc--c
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK--L 259 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~--L 259 (858)
......++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|+|..+.|+. |
T Consensus 83 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 83 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp CGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred cccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 22345689999999999999999999999999999875 4567999999999999999999999999999975 7
Q ss_pred ccccc
Q 003007 260 DIHFS 264 (858)
Q Consensus 260 ~V~~a 264 (858)
.|.||
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77765
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=8.1e-18 Score=166.22 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=122.3
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE--EEEecCccccccceEEeeecCccccCc---ccccccCCCCccccCC---C
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM--ELEGEPQESLSMSMSKISISDSASGNG---LLHYSVPNGAGTVAGE---H 185 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i--~V~~d~~esa~~a~~~v~~~~~~~a~~---~~~~~l~n~v~~~sg~---~ 185 (858)
...++|++||.++++.++.++|..+|.+ .+..+......++++++.|.+...+.. +.+..+.+....+... .
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcc
Confidence 5789999999999999999999998864 123444566778899999887766543 2333333332222111 1
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
.....+.++|||+|||.++++++|+++|++||+|..+..+++++|||||+|.+.++|.+|++.|+|..|.|++|.|.|+.
T Consensus 93 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 93 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp CSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 22344678999999999999999999999999999885577899999999999999999999999999999999999997
Q ss_pred CC
Q 003007 266 PK 267 (858)
Q Consensus 266 pk 267 (858)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=2.2e-16 Score=155.00 Aligned_cols=148 Identities=14% Similarity=0.253 Sum_probs=114.0
Q ss_pred cceeeeccCCCCCChHHHHHHhcCC----C-------cEEEEecCccccccceEEeeecCccccCccc---ccccCCCCc
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSG----G-------GMELEGEPQESLSMSMSKISISDSASGNGLL---HYSVPNGAG 179 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~----G-------~i~V~~d~~esa~~a~~~v~~~~~~~a~~~~---~~~l~n~v~ 179 (858)
.+.++|++||.++++.++.++|+.+ | .| .+......++++++.|.+.+.+.... +..+.+...
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v---~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE---EEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCce---eeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 4789999999999999999999998 5 33 11112344788888888776655332 222222222
Q ss_pred cccCCCC-CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCc
Q 003007 180 TVAGEHP-YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP 253 (858)
Q Consensus 180 ~~sg~~~-~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~ 253 (858)
.+..... ......++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 2211111 12234689999999999999999999999999999885 56679999999999999999999999999
Q ss_pred ccccccccccc
Q 003007 254 LRRRKLDIHFS 264 (858)
Q Consensus 254 l~gr~L~V~~a 264 (858)
+.|++|.|+||
T Consensus 161 ~~g~~l~V~~A 171 (172)
T 2g4b_A 161 LGDKKLLVQRA 171 (172)
T ss_dssp ETTEECEEEEC
T ss_pred ECCeEEEEEeC
Confidence 99999999987
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=3.1e-16 Score=157.49 Aligned_cols=152 Identities=12% Similarity=0.212 Sum_probs=113.9
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCC-----------cEEEEecCccccccceEEeeecCccccCccc---ccccCCCCc
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGG-----------GMELEGEPQESLSMSMSKISISDSASGNGLL---HYSVPNGAG 179 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G-----------~i~V~~d~~esa~~a~~~v~~~~~~~a~~~~---~~~l~n~v~ 179 (858)
.++++|++||.++++.++.++|+.+| .| .+......++++++.|.+.+.+.... +..+.+...
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v---~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i 80 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV---LAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSE---EEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCce---EEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceE
Confidence 57899999999999999999999984 22 11122344677777777665543221 111111111
Q ss_pred cccCC---------------------CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEE
Q 003007 180 TVAGE---------------------HPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVM 233 (858)
Q Consensus 180 ~~sg~---------------------~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aF 233 (858)
.+... ......+.++|||+|||.++++++|+++|++||.|..+++ +++++||||
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~af 160 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 160 (198)
T ss_dssp EEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEE
T ss_pred EEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEE
Confidence 11000 0112246799999999999999999999999999999885 566799999
Q ss_pred EEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 234 ISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 234 V~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
|+|.+.++|++|++.|+|..|.|++|.|.|+.++.
T Consensus 161 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 161 CEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999998764
No 35
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=6.8e-16 Score=160.41 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=115.5
Q ss_pred cceeeeccCCC-CCChHHHHHHhcCCCcE-EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCCCC-
Q 003007 114 MDDFDLRGLPS-SLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHP- 186 (858)
Q Consensus 114 ~~el~V~~Lp~-~~~E~el~~lFs~~G~i-~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~~~- 186 (858)
...++|++||. ++++.++.++|+.+|.| .|.+-... ++++++.|.+...+.. +.+..+.+....+.....
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 47899999999 99999999999999987 22222211 5677888777665541 222222222111100000
Q ss_pred -----------------------------------CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEeCCCccc
Q 003007 187 -----------------------------------YGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKHRG 230 (858)
Q Consensus 187 -----------------------------------~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG-~I~sv~~~~ksrG 230 (858)
....+.++|||+|||.++++++|+++|++|| +|..|++..+.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g 190 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 190 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTT
T ss_pred cccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCc
Confidence 0123468999999999999999999999999 9999998677899
Q ss_pred EEEEEEcCHHHHHHHHHHhcCCccc-cccccccccCCC
Q 003007 231 FVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 267 (858)
Q Consensus 231 ~aFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~pk 267 (858)
||||+|.+.++|++|++.|+|..+. |++|+|.|+.++
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999999999999999999999 999999999763
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=155.34 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=112.4
Q ss_pred ceeeeccCCC-CCChHHHHHHhcCCCcE-EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCC----
Q 003007 115 DDFDLRGLPS-SLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGE---- 184 (858)
Q Consensus 115 ~el~V~~Lp~-~~~E~el~~lFs~~G~i-~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~---- 184 (858)
+.++|++||. ++++.++.++|+.+|.| .+.+-... ++++++.|.+...+.. +.+..+.+....+...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 6899999999 99999999999999986 33222211 4566666665544431 1222222111111000
Q ss_pred --------------------------------CCCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEeCCCcccE
Q 003007 185 --------------------------------HPYGEHPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYTACKHRGF 231 (858)
Q Consensus 185 --------------------------------~~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG-~I~sv~~~~ksrG~ 231 (858)
......++++|||+|||.++++++|+++|++|| .|..+++....+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~ 160 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKM 160 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSC
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcE
Confidence 001123578999999999999999999999999 99999987778999
Q ss_pred EEEEEcCHHHHHHHHHHhcCCccc-cccccccccCCC
Q 003007 232 VMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSIPK 267 (858)
Q Consensus 232 aFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~pk 267 (858)
|||+|.+.++|++|+..|+|..+. |++|.|.|+.++
T Consensus 161 afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 161 ALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999999999 999999998763
No 37
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=9.6e-16 Score=163.34 Aligned_cols=75 Identities=20% Similarity=0.347 Sum_probs=70.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccc-cccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~ 265 (858)
+.++|||+|||.++++++|+++|++||.|..|++....+|||||+|.+.++|++|++.|+|..|. |++|+|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 56899999999999999999999999999999876556799999999999999999999999999 9999999985
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=141.23 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=70.7
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
.++|||+|||.++|+++|+++|++||.|++|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+|++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 468999999999999999999999999999976 466789999999999999999999999999999999999986
No 39
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=4.7e-16 Score=149.45 Aligned_cols=120 Identities=22% Similarity=0.336 Sum_probs=77.3
Q ss_pred cEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe
Q 003007 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (858)
Q Consensus 230 G~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri 309 (858)
-++|++|.|...|..|+..+++....++. .+.+..+ ........+|||+|||.++|+++|+++|++||.|+.|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp -------------------------------CCSCCS----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 36889999999999999999887766654 2334433 223345679999999999999999999999999999987
Q ss_pred -----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 310 -----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 310 -----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 456789999999999999999999999999999999999987654
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=139.67 Aligned_cols=76 Identities=22% Similarity=0.472 Sum_probs=71.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..++|||+|||.++|+++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 4589999999999999999999999999999874 57889999999999999999999999999999999999997
Q ss_pred C
Q 003007 266 P 266 (858)
Q Consensus 266 p 266 (858)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 6
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.62 E-value=8.6e-16 Score=143.27 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=71.7
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.++|||+|||+++|+++|+++|++||.|++|++. ..++|||||+|.+.++|++||+.|+|..+.|++|+|++++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 4689999999999999999999999999999873 3468999999999999999999999999999999999998765
Q ss_pred cc
Q 003007 354 AR 355 (858)
Q Consensus 354 ~r 355 (858)
.+
T Consensus 85 ~~ 86 (115)
T 4f25_A 85 ER 86 (115)
T ss_dssp C-
T ss_pred cc
Confidence 44
No 42
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=5.3e-16 Score=143.94 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=91.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
.++++|||+|||.++++++|+++|++||.|..|.+ .+.++|||||+|.+.++|++|+..|+|..+.|+.|.|.|+.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 46799999999999999999999999999999985 5667999999999999999999999999999999999999754
Q ss_pred CCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCc
Q 003007 268 DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE 303 (858)
Q Consensus 268 ~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~ 303 (858)
... .+++...++++|+++|++||.
T Consensus 86 ~~~------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 86 RAF------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHT------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hhh------------hhhhHhHhHHHHHHHHHHhCC
Confidence 321 567788899999999999984
No 43
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=2e-15 Score=140.14 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=75.2
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
+..+|||+||++++|+++|+++|++||.|++|++ +++++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999986 46789999999999999999999999999999999999998
Q ss_pred CCcccch
Q 003007 351 PGGARRN 357 (858)
Q Consensus 351 ~~~~r~~ 357 (858)
.+..++.
T Consensus 85 ~~~~~~~ 91 (110)
T 3s8s_A 85 KGQQRMK 91 (110)
T ss_dssp TTHHHHH
T ss_pred CCcHHHH
Confidence 7765543
No 44
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=4.8e-15 Score=152.29 Aligned_cols=105 Identities=18% Similarity=0.314 Sum_probs=93.5
Q ss_pred CccceeeeCCC-CCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc-
Q 003007 276 NQGTLVVFNLD-PSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG- 353 (858)
Q Consensus 276 ~~~tLfV~NLp-~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~- 353 (858)
...+|||+||| .++|+++|+++|++||.|.+|++...++|||||+|.+.++|++||+.|||..+.|++|+|.+++...
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 35689999999 8999999999999999999999988789999999999999999999999999999999999986321
Q ss_pred ----------------------------------------ccchhhhccchhhcHHHHHHHHhhcCC
Q 003007 354 ----------------------------------------ARRNLMLQLNQELEQDESRILQHQVGS 380 (858)
Q Consensus 354 ----------------------------------------~r~~~~~ql~~~~~~~~l~~~f~~~Gs 380 (858)
.+..++.++...+++++++.+|.++|.
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~ 149 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGV 149 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTC
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 012457888889999999999999983
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.1e-15 Score=135.53 Aligned_cols=94 Identities=24% Similarity=0.364 Sum_probs=81.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 272 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~ 272 (858)
++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|++.|++..+.|++|.|+|+.++.....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~ 80 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSR 80 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCccc
Confidence 58999999999999999999999999999986544799999999999999999999999999999999999987653221
Q ss_pred C------CCCccceeeeCCC
Q 003007 273 K------DLNQGTLVVFNLD 286 (858)
Q Consensus 273 ~------~~~~~tLfV~NLp 286 (858)
. .....+|||+||+
T Consensus 81 ~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 81 FDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCCccccCCCceecCCCC
Confidence 1 1124689999997
No 46
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=9.2e-15 Score=135.53 Aligned_cols=102 Identities=21% Similarity=0.405 Sum_probs=90.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||..+|+++|+++|++||.|.+|++ .+.++|||||+|.+.++|++|++.|||..+.|+.|.|.++.+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 3468999999999999999999999999999987 45678999999999999999999999999999999999998765
Q ss_pred ccchhhhccchhhcHHHHHHHHhhcCCC
Q 003007 354 ARRNLMLQLNQELEQDESRILQHQVGSP 381 (858)
Q Consensus 354 ~r~~~~~ql~~~~~~~~l~~~f~~~GsP 381 (858)
.. .++....+++++..+|.++|..
T Consensus 87 ~~----~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 87 AF----QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp HT----TTSCHHHHHHHHHHHHHHHCCC
T ss_pred hh----hhhhHhHhHHHHHHHHHHhCCC
Confidence 43 4555677888999999999854
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=2e-15 Score=135.13 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=72.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhc-CCcccccccccccc
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ-NKPLRRRKLDIHFS 264 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG-~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Ln-g~~l~gr~L~V~~a 264 (858)
+++|||+|||.++|+++|+++|++|| +|.+|++ +++++|||||+|.+.++|++|++.++ +..+.|++|.|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 7988874 57899999999999999999999874 56799999999999
Q ss_pred CCCCCCCC
Q 003007 265 IPKDNPSD 272 (858)
Q Consensus 265 ~pk~~~~~ 272 (858)
.|+....+
T Consensus 81 ~~~~~~~~ 88 (91)
T 2lxi_A 81 DPKPKINE 88 (91)
T ss_dssp CSCCCCSC
T ss_pred CCCCCCCC
Confidence 88765443
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.56 E-value=5e-15 Score=146.66 Aligned_cols=122 Identities=18% Similarity=0.274 Sum_probs=72.8
Q ss_pred EEEcCHHHHHHHHHHhcCCccc--cccccccccCCCC----------------CCCCCCCCccceeeeCCCCCCchhHHH
Q 003007 234 ISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD----------------NPSDKDLNQGTLVVFNLDPSVSNEDLR 295 (858)
Q Consensus 234 V~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~pk~----------------~~~~~~~~~~tLfV~NLp~~vTeedL~ 295 (858)
.+|.+.++|+.|+..|++.... |+.+...++.... ..........+|||+|||..+|+++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6899999999999999887665 5555555432110 001122345689999999999999999
Q ss_pred HhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003007 296 QIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 296 ~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (858)
++|++||.|..|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.|+.++..+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 99999999999987 3456899999999999999999999999999999999999876544
No 49
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=134.20 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=73.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC--CccccccccccccC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 265 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng--~~l~gr~L~V~~a~ 265 (858)
...+.++|||+|||+++++++|+++|++||+|.+|++.. .+|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 345679999999999999999999999999999998643 589999999999999999998864 78999999999998
Q ss_pred CCCCCC
Q 003007 266 PKDNPS 271 (858)
Q Consensus 266 pk~~~~ 271 (858)
++....
T Consensus 91 ~~~~~~ 96 (105)
T 1sjq_A 91 HKELKT 96 (105)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 776543
No 50
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.2e-14 Score=153.98 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=114.5
Q ss_pred cceeeeccCCCCCChHHHHHHhcCCCcE-EEEecCccccccceEEeeecCccccCc----ccccccCCCCccccCCCCCC
Q 003007 114 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNGAGTVAGEHPYG 188 (858)
Q Consensus 114 ~~el~V~~Lp~~~~E~el~~lFs~~G~i-~V~~d~~esa~~a~~~v~~~~~~~a~~----~~~~~l~n~v~~~sg~~~~~ 188 (858)
.+.++|++||.++++.++.++|+.+|.| .|.+- ..++++++.|.+...+.. +.+..+.+....+..
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~----- 92 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN----RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF----- 92 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE-----
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe----CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee-----
Confidence 4689999999999999999999999987 33332 246889998887766542 233333332222221
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCc-cc---ccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LR---RRKLD 260 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~-l~---gr~L~ 260 (858)
..+.++|||+|||..+|+++|+++|++||.|..|++ +++++|||||+|.+.++|.+|+..|++.. +. +++|.
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 135689999999999999999999999999999874 56789999999999999999999995544 33 89999
Q ss_pred ccccCCCC
Q 003007 261 IHFSIPKD 268 (858)
Q Consensus 261 V~~a~pk~ 268 (858)
|.++.+..
T Consensus 173 v~~~~~~~ 180 (261)
T 3sde_A 173 VEPMEQFD 180 (261)
T ss_dssp EEECCCEE
T ss_pred EeeccccC
Confidence 99987654
No 51
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=130.07 Aligned_cols=80 Identities=28% Similarity=0.401 Sum_probs=74.2
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
...++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999987 4567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 88754
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=134.64 Aligned_cols=79 Identities=18% Similarity=0.385 Sum_probs=73.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
+.+.++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356799999999999999999999999999999985 578999999999999999999999999999999999999
Q ss_pred cCCC
Q 003007 264 SIPK 267 (858)
Q Consensus 264 a~pk 267 (858)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8643
No 53
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-14 Score=129.53 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=74.0
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
.....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 3456799999999999999999999999999999873 456799999999999999999999999999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
+++..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88753
No 54
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=132.54 Aligned_cols=80 Identities=13% Similarity=0.269 Sum_probs=72.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCc--cccccccccccC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSI 265 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~--l~gr~L~V~~a~ 265 (858)
...++++|||+|||.++|+++|+++|++||.|.+|++. +.||||||+|.+.++|++|++.|++.. +.|++|+|+|+.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 34578999999999999999999999999999999763 578999999999999999999999886 779999999997
Q ss_pred CCC
Q 003007 266 PKD 268 (858)
Q Consensus 266 pk~ 268 (858)
+++
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 654
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.5e-14 Score=128.97 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=75.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999985 567899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003007 264 SIPKDNP 270 (858)
Q Consensus 264 a~pk~~~ 270 (858)
+.++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9887654
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=130.11 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999999999999999999999999999987 456789999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003007 349 SRPGGAR 355 (858)
Q Consensus 349 s~~~~~r 355 (858)
++++..+
T Consensus 92 a~~~~~~ 98 (105)
T 1x5u_A 92 ASAHNKN 98 (105)
T ss_dssp TTTTSCC
T ss_pred CCCCCcC
Confidence 9887643
No 57
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-15 Score=132.89 Aligned_cols=77 Identities=19% Similarity=0.383 Sum_probs=69.7
Q ss_pred cceeeeCCCCCCchhHHHHhhcccC-ceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhC-CCccCCceEEEEecC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLN-RSDIAGKRIKLEPSR 350 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG-~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~Ln-G~~i~Gr~I~V~~s~ 350 (858)
.+|||+|||+++|+++|+++|++|| .|++|++ ++.++|||||+|.+.++|++|++.|+ +..+.|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 4799999999999999999999999 8999976 46789999999999999999999885 568999999999998
Q ss_pred CCcc
Q 003007 351 PGGA 354 (858)
Q Consensus 351 ~~~~ 354 (858)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 58
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.2e-14 Score=130.71 Aligned_cols=81 Identities=30% Similarity=0.470 Sum_probs=73.4
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
.....+|||+|||.++|+++|+++|++||.|+.|++. +.+++||||+|.+.++|++|++.||+..|.|+.|+|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3456799999999999999999999999999999873 44689999999999999999999999999999999999987
Q ss_pred Ccc
Q 003007 352 GGA 354 (858)
Q Consensus 352 ~~~ 354 (858)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=129.32 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=74.9
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
....++|||+|||.++|+++|+++|++||.|.+|++. +.+++||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3456799999999999999999999999999999874 4678999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87644
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.9e-14 Score=129.33 Aligned_cols=81 Identities=22% Similarity=0.447 Sum_probs=74.0
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC------CCCccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEE
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKL 346 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit------~~srG~aFVeF~d~e~A~kAl~~L-nG~~i~Gr~I~V 346 (858)
.....+|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.| ||..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4456799999999999999999999999999999874 345899999999999999999999 999999999999
Q ss_pred EecCCCcc
Q 003007 347 EPSRPGGA 354 (858)
Q Consensus 347 ~~s~~~~~ 354 (858)
++++++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99988754
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=4e-14 Score=125.73 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+|+.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 356799999999999999999999999999999875 56689999999999999999999999999999999999998
Q ss_pred CCCC
Q 003007 266 PKDN 269 (858)
Q Consensus 266 pk~~ 269 (858)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 62
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=126.27 Aligned_cols=77 Identities=18% Similarity=0.390 Sum_probs=69.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
+..+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 3568999999999999999999999999999987 45568999999999999999999999999999999999998
Q ss_pred CC
Q 003007 351 PG 352 (858)
Q Consensus 351 ~~ 352 (858)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 63
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.6e-14 Score=128.56 Aligned_cols=83 Identities=16% Similarity=0.302 Sum_probs=76.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567799999999999999999999999999999985 5678999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003007 262 HFSIPKDN 269 (858)
Q Consensus 262 ~~a~pk~~ 269 (858)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987654
No 64
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=134.14 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=71.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||+++|+++|+++|++||.|++|++... +|||||+|.+.++|++|++.|++ ..+.|++|+|.+++++.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 4578999999999999999999999999999998653 89999999999999999999874 78999999999998765
Q ss_pred cc
Q 003007 354 AR 355 (858)
Q Consensus 354 ~r 355 (858)
.+
T Consensus 94 ~~ 95 (105)
T 1sjq_A 94 LK 95 (105)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 65
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.53 E-value=6.7e-15 Score=133.27 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=67.9
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCc--eEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCC----ccCCceEE
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGKRIK 345 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~--I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~----~i~Gr~I~ 345 (858)
-.||||+|||+++|+++|+++|++||. |.+|++ ++.++|||||+|.+.++|++|++.|||. .|+|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 468999999999999999999999995 567775 4678999999999999999999999997 48999999
Q ss_pred EEecCC
Q 003007 346 LEPSRP 351 (858)
Q Consensus 346 V~~s~~ 351 (858)
|+|++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999875
No 66
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=128.73 Aligned_cols=84 Identities=25% Similarity=0.472 Sum_probs=76.0
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEEcCHHHHHHHHHHh-cCCccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKL 259 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~------~~ksrG~aFV~F~d~e~A~~Al~~L-ng~~l~gr~L 259 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..| ++..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999985 4557999999999999999999999 9999999999
Q ss_pred cccccCCCCCC
Q 003007 260 DIHFSIPKDNP 270 (858)
Q Consensus 260 ~V~~a~pk~~~ 270 (858)
.|.|+.++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=2.6e-14 Score=124.37 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=70.8
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.+|||+|||.++++++|+++|++||.|.++++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 47999999999999999999999999999976 3556899999999999999999999999999999999999876
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.5e-14 Score=128.67 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=68.4
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
..-|||+||++.+|+++|+++|.+||+|+++++.. ++|||||+|.+.++|++|++.||++.+.|++|+|+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 34699999999999999999999999999999854 7999999999999999999999999999999999998
No 69
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.8e-14 Score=126.65 Aligned_cols=82 Identities=23% Similarity=0.470 Sum_probs=74.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ |++..|.|++|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456799999999999999999999999999999985 46689999999999999999999 99999999999999
Q ss_pred ccCCCCCC
Q 003007 263 FSIPKDNP 270 (858)
Q Consensus 263 ~a~pk~~~ 270 (858)
|+.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.8e-14 Score=129.63 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=74.5
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345689999999999999999999999999999986 455689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003007 349 SRPGGAR 355 (858)
Q Consensus 349 s~~~~~r 355 (858)
++++..+
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887543
No 71
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.8e-14 Score=125.95 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=74.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45799999999999999999999999999999885 4668999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003007 265 IPKDNP 270 (858)
Q Consensus 265 ~pk~~~ 270 (858)
.++...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=2.8e-14 Score=124.09 Aligned_cols=77 Identities=27% Similarity=0.458 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
+.+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999874 466799999999999999999999999999999999999987
Q ss_pred CC
Q 003007 267 KD 268 (858)
Q Consensus 267 k~ 268 (858)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 73
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.5e-14 Score=128.69 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
....+.++|||+|||.++++++|+++|++||.|..|++ ..+++|||||+|.+.++|++|++.|++..|.|++|.|+|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 34556799999999999999999999999999999885 4557899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
.++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=128.47 Aligned_cols=82 Identities=30% Similarity=0.397 Sum_probs=74.3
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCC---CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~---~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
.....+|||+|||.++|+++|+++|++||.|++|++.. .++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 34567999999999999999999999999999998743 367999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2cqi_A 92 TPSSQ 96 (103)
T ss_dssp CTTCC
T ss_pred CCccc
Confidence 87644
No 75
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=130.76 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=70.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~--i~Gr~I~V~~s~~~~ 353 (858)
+..+|||+|||+++|+++|+++|++||.|++|++.. .||+|||+|.+.++|.+|++.|+|.. +.|++|.|.|++++.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 457899999999999999999999999999999864 58999999999999999999999886 789999999998753
No 76
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=2.9e-14 Score=132.30 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=74.0
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++||.|++|++ ++.++|||||+|.+.++|++|++.|||..|.|++|+|+++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35579999999999999999999999999999976 4567899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 887643
No 77
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.52 E-value=2.4e-14 Score=125.71 Aligned_cols=78 Identities=18% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999885 5668999999999999999999999999999999999999
Q ss_pred CCC
Q 003007 265 IPK 267 (858)
Q Consensus 265 ~pk 267 (858)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 78
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.4e-14 Score=128.87 Aligned_cols=82 Identities=15% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCC--cccccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK--PLRRRKLDIHFS 264 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~--~l~gr~L~V~~a 264 (858)
....++++|||+|||+++++++|+++|++||+|..|.+. +.+|||||+|.+.++|++|++.|++. .+.|++|+|+|+
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 345678999999999999999999999999999999764 35899999999999999999999765 489999999999
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wex_A 89 TSKRI 93 (104)
T ss_dssp SSSSC
T ss_pred cCccc
Confidence 87653
No 79
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=126.13 Aligned_cols=79 Identities=27% Similarity=0.388 Sum_probs=72.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3568999999999999999999999999999987 35568999999999999999999999999999999999998
Q ss_pred CCcc
Q 003007 351 PGGA 354 (858)
Q Consensus 351 ~~~~ 354 (858)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7654
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.2e-14 Score=126.14 Aligned_cols=78 Identities=26% Similarity=0.442 Sum_probs=71.8
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||.++++++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 56789999999999999999999999999999999999
Q ss_pred cCC
Q 003007 349 SRP 351 (858)
Q Consensus 349 s~~ 351 (858)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 875
No 81
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=3.3e-14 Score=127.63 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
++++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4789999999999999999999999999999985 36779999999999999999999999999999999999998
Q ss_pred CCC
Q 003007 266 PKD 268 (858)
Q Consensus 266 pk~ 268 (858)
++.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 82
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=1.9e-14 Score=134.11 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=71.7
Q ss_pred ccccccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccC-ceEEEEeC-CCCccEEEEEEcCHHHHHHHHHHh
Q 003007 257 RKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET-PHKRHHKFIEFYDVRAAEAALKSL 334 (858)
Q Consensus 257 r~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG-~I~~irit-~~srG~aFVeF~d~e~A~kAl~~L 334 (858)
.++.+.|..+. ....+|||+|||+++|+++|+++|++|| .|..+++. ..++|||||+|.+.++|++||+.|
T Consensus 15 ~~~~~~~~~~p-------~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~l 87 (111)
T 2jvr_A 15 VPRGSHMSKLP-------AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERL 87 (111)
T ss_dssp ----------C-------CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHT
T ss_pred eecchhcCCCC-------CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHc
Confidence 34556665432 1346899999999999999999999999 99999984 568999999999999999999999
Q ss_pred CCCccCCceEEEEecCCCc
Q 003007 335 NRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 335 nG~~i~Gr~I~V~~s~~~~ 353 (858)
||..+.|+.|+|++++...
T Consensus 88 ng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 88 NNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp TTEEETTEEEEEEESCC--
T ss_pred CCCEECCeEEEEEECCCCC
Confidence 9999999999999987653
No 83
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=126.64 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=72.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccC--CceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~--Gr~I~V~~s~~~~ 353 (858)
..++|||+|||.++|+++|+++|++||.|++|++... ++||||+|.+.++|++|++.|||..+. |++|+|++++++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 4568999999999999999999999999999998654 789999999999999999999999999 9999999998865
Q ss_pred c
Q 003007 354 A 354 (858)
Q Consensus 354 ~ 354 (858)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 84
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.52 E-value=3e-14 Score=124.47 Aligned_cols=75 Identities=27% Similarity=0.462 Sum_probs=69.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4578999999999999999999999999999986 34578999999999999999999999999999999999975
No 85
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.4e-14 Score=126.83 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=73.1
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++ |+|..+.|+.|+|+++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999873 4578999999999999999998 9999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 887543
No 86
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=5.9e-14 Score=126.83 Aligned_cols=81 Identities=16% Similarity=0.295 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999885 367789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98764
No 87
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.9e-14 Score=133.57 Aligned_cols=85 Identities=25% Similarity=0.335 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC--Ccccccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFS 264 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng--~~l~gr~L~V~~a 264 (858)
....++++|||+|||+++++++|+++|++||+|..|++. +.+|||||+|.+.++|++|++.|++ ..|.|++|+|.|+
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 345678999999999999999999999999999999864 3589999999999999999999874 6899999999999
Q ss_pred CCCCCCCC
Q 003007 265 IPKDNPSD 272 (858)
Q Consensus 265 ~pk~~~~~ 272 (858)
.++.....
T Consensus 105 ~~k~~~~~ 112 (119)
T 2ad9_A 105 NHKELKTD 112 (119)
T ss_dssp SSSSCCCC
T ss_pred cCCCCCcc
Confidence 87765443
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=125.40 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=71.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCC-----C-CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-----H-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~-----~-srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
..++|||+|||.++|+++|+++|++||.|.+|++.. . ++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999998732 2 6899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
.+...
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 89
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.51 E-value=4e-14 Score=127.09 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=72.6
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
.++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 4689999999999999999999999999999873 55689999999999999999999999999999999999998
Q ss_pred Ccc
Q 003007 352 GGA 354 (858)
Q Consensus 352 ~~~ 354 (858)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 764
No 90
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=5.5e-14 Score=130.30 Aligned_cols=82 Identities=21% Similarity=0.410 Sum_probs=74.5
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999987 445689999999999999999999999999999999999
Q ss_pred cCCCccc
Q 003007 349 SRPGGAR 355 (858)
Q Consensus 349 s~~~~~r 355 (858)
++++..+
T Consensus 92 a~~~~~~ 98 (115)
T 2dgo_A 92 ATRKPPA 98 (115)
T ss_dssp SSCCCCC
T ss_pred ccCCCCC
Confidence 9887543
No 91
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=128.66 Aligned_cols=83 Identities=27% Similarity=0.397 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|+..|++..|.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556799999999999999999999999999999985 3678999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003007 262 HFSIPKDN 269 (858)
Q Consensus 262 ~~a~pk~~ 269 (858)
+|+.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99986543
No 92
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=4.5e-14 Score=125.30 Aligned_cols=77 Identities=26% Similarity=0.416 Sum_probs=72.2
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
...++|||+|||.++|+++|+++|++||.|++|++. ++||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 79999999999999999999999999999999999988754
No 93
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=8.9e-14 Score=126.64 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=74.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccc---ccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR---RKLDI 261 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g---r~L~V 261 (858)
..+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..+.+ ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356799999999999999999999999999999885 45678999999999999999999999999998 99999
Q ss_pred cccCCCCC
Q 003007 262 HFSIPKDN 269 (858)
Q Consensus 262 ~~a~pk~~ 269 (858)
.|+.++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 94
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.8e-14 Score=127.56 Aligned_cols=83 Identities=18% Similarity=0.408 Sum_probs=75.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 3457799999999999999999999999999999885 3578999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003007 265 IPKDNP 270 (858)
Q Consensus 265 ~pk~~~ 270 (858)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887654
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.51 E-value=8.2e-14 Score=129.11 Aligned_cols=84 Identities=17% Similarity=0.381 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457799999999999999999999999999999885 5667899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003007 262 HFSIPKDNP 270 (858)
Q Consensus 262 ~~a~pk~~~ 270 (858)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 96
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.3e-14 Score=127.10 Aligned_cols=81 Identities=25% Similarity=0.456 Sum_probs=73.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~--------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
.+.++|||+|||.++++++|+++|++||+|..|++. ++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 467999999999999999999999999999998752 277899999999999999999999999999999999
Q ss_pred cccCCCCCC
Q 003007 262 HFSIPKDNP 270 (858)
Q Consensus 262 ~~a~pk~~~ 270 (858)
+|+.++..+
T Consensus 83 ~~a~~~~~~ 91 (98)
T 2cpf_A 83 RISERATKP 91 (98)
T ss_dssp ECSSCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.8e-14 Score=128.10 Aligned_cols=82 Identities=23% Similarity=0.327 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc--CCccccccccccccC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSI 265 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Ln--g~~l~gr~L~V~~a~ 265 (858)
...++++|||+|||+++++++|+++|++||.|..|.+. +.+|||||+|.+.++|++|++.|+ +..+.|++|+|.|+.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 44578999999999999999999999999999999764 358999999999999999999875 567999999999998
Q ss_pred CCCCC
Q 003007 266 PKDNP 270 (858)
Q Consensus 266 pk~~~ 270 (858)
++...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76543
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=129.64 Aligned_cols=79 Identities=25% Similarity=0.412 Sum_probs=72.8
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 456789999999999999999999999999999873 566899999999999999999999999999999999999
Q ss_pred CCCc
Q 003007 350 RPGG 353 (858)
Q Consensus 350 ~~~~ 353 (858)
+++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 99
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.51 E-value=6.5e-14 Score=127.53 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=73.6
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCC---ceEEEE
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG---KRIKLE 347 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G---r~I~V~ 347 (858)
....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.| +.|+|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 346799999999999999999999999999999873 4458999999999999999999999999998 999999
Q ss_pred ecCCCccc
Q 003007 348 PSRPGGAR 355 (858)
Q Consensus 348 ~s~~~~~r 355 (858)
++++...+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99887654
No 100
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=6.8e-14 Score=124.73 Aligned_cols=76 Identities=29% Similarity=0.430 Sum_probs=70.3
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
...++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 356799999999999999999999999999999873 456899999999999999999999999999999999997
Q ss_pred C
Q 003007 350 R 350 (858)
Q Consensus 350 ~ 350 (858)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 101
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.8e-14 Score=128.10 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..|++..|.|++|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4456799999999999999999999999999999885 56789999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 003007 263 FSIPKDN 269 (858)
Q Consensus 263 ~a~pk~~ 269 (858)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 102
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3.1e-14 Score=128.03 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=72.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC--------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit--------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
...+|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 45689999999999999999999999999999763 1567999999999999999999999999999999999
Q ss_pred ecCCCcc
Q 003007 348 PSRPGGA 354 (858)
Q Consensus 348 ~s~~~~~ 354 (858)
+++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9988653
No 103
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=4.2e-14 Score=123.53 Aligned_cols=77 Identities=26% Similarity=0.480 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|+|..+.|++|+|+|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356799999999999999999999999999999974 456899999999999999999999999999999999998
Q ss_pred cC
Q 003007 264 SI 265 (858)
Q Consensus 264 a~ 265 (858)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 104
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.9e-14 Score=126.89 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=72.2
Q ss_pred CccceeeeCCCCCCchhHHH----HhhcccCceEEEEeCCC--CccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRETPH--KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~----~~Fs~fG~I~~irit~~--srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
+..+|||+|||.++++++|+ ++|++||.|++|++... .++||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 45789999999999999999 99999999999998532 2889999999999999999999999999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
++...
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87653
No 105
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=125.79 Aligned_cols=84 Identities=21% Similarity=0.366 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~---~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
....+.++|||+|||.++++++|+++|++||+|..|++. ..++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345667999999999999999999999999999999852 34689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003007 264 SIPKDNP 270 (858)
Q Consensus 264 a~pk~~~ 270 (858)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 106
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=129.21 Aligned_cols=81 Identities=17% Similarity=0.448 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|+..|+|..|.|++|.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999985 36789999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003007 263 FSIPKD 268 (858)
Q Consensus 263 ~a~pk~ 268 (858)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997654
No 107
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=3.2e-14 Score=131.08 Aligned_cols=96 Identities=20% Similarity=0.288 Sum_probs=81.6
Q ss_pred cccccccccccCCCCCCCCCCCCccceeeeCCCCC-CchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHH
Q 003007 254 LRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALK 332 (858)
Q Consensus 254 l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~ 332 (858)
..|.+|.+..+.+..... .....++|||+|||.+ +|+++|+++|++||.|.+|++ ++|||||+|.+.++|++|++
T Consensus 5 ~~g~~~~~~~s~~~~~~~-~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKND-PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CCSCCCCCCCCCSCCSCC-CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHH
T ss_pred CCCcccccccCCCCCCCC-CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHH
Confidence 346777777765443322 2234579999999999 999999999999999999999 68999999999999999999
Q ss_pred HhCCCccCCceEEEEecCCCc
Q 003007 333 SLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 333 ~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.|||..+.|++|+|+++++..
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 999999999999999998654
No 108
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=128.22 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEEEecCCC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln--G~~i~Gr~I~V~~s~~~ 352 (858)
.+.++|||+|||.++|+++|+++|++||.|++|++... +|||||+|.+.++|++|++.|+ +..+.|++|+|.|++++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 34578999999999999999999999999999988653 8999999999999999999874 67899999999999876
Q ss_pred ccc
Q 003007 353 GAR 355 (858)
Q Consensus 353 ~~r 355 (858)
..+
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 543
No 109
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7e-14 Score=127.03 Aligned_cols=82 Identities=18% Similarity=0.435 Sum_probs=74.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...+.++|||+|||.++++++|+++|++||.|..|++ ...++|||||+|.+.++|++|++.|++..|.|++|+|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 4567799999999999999999999999999999985 2347899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 87654
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=8.4e-14 Score=127.94 Aligned_cols=81 Identities=20% Similarity=0.363 Sum_probs=74.3
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhC------CCccCCce
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLN------RSDIAGKR 343 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~Ln------G~~i~Gr~ 343 (858)
....+|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|| |..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346799999999999999999999999999999874 5679999999999999999999999 99999999
Q ss_pred EEEEecCCCccc
Q 003007 344 IKLEPSRPGGAR 355 (858)
Q Consensus 344 I~V~~s~~~~~r 355 (858)
|+|+++.++..+
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999887543
No 111
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=8e-14 Score=123.66 Aligned_cols=79 Identities=25% Similarity=0.407 Sum_probs=73.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
..+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|++.|++..+.|++|+|+|+.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 3567999999999999999999999999999999874 8999999999999999999999999999999999998765
Q ss_pred CC
Q 003007 269 NP 270 (858)
Q Consensus 269 ~~ 270 (858)
..
T Consensus 82 ~~ 83 (90)
T 2dnq_A 82 KA 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 112
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=128.51 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=74.0
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 356799999999999999999999999999999873 457899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887543
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.50 E-value=4.6e-14 Score=129.80 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=73.9
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||..+|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 356789999999999999999999999999999873 456899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 876543
No 114
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=4.5e-14 Score=128.28 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=73.5
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 346799999999999999999999999999999873 567899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
++...
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87653
No 115
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=128.69 Aligned_cols=80 Identities=23% Similarity=0.495 Sum_probs=73.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++++
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 45799999999999999999999999999999873 3468999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 1x5s_A 91 KSSDN 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 116
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=1.2e-14 Score=129.36 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=66.0
Q ss_pred cceeeeCCCCCCchhHHHHhhcccC--ceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG--~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
.+|||+|||.++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 9999876 56789999999999999999999999999999999999998
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 764
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.1e-14 Score=129.84 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=71.9
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCc--ccccccccccc
Q 003007 188 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFS 264 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~-~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~--l~gr~L~V~~a 264 (858)
...++++|||+|||+ ++++++|+++|++||+|.+|++. +.+|||||+|.+.++|++|++.|++.. |.|++|+|.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 345789999999999 99999999999999999999864 467999999999999999999998754 89999999999
Q ss_pred CCCC
Q 003007 265 IPKD 268 (858)
Q Consensus 265 ~pk~ 268 (858)
..+.
T Consensus 90 ~~~~ 93 (102)
T 1x4d_A 90 QKYK 93 (102)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7544
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=125.95 Aligned_cols=81 Identities=21% Similarity=0.368 Sum_probs=73.6
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCC---CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP---HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~---~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
....++|||+|||.++|+++|+++|++||.|.+|++.. .++|||||+|.+.++|++|++.|||..|.|+.|+|++++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34567999999999999999999999999999998742 358999999999999999999999999999999999998
Q ss_pred CCcc
Q 003007 351 PGGA 354 (858)
Q Consensus 351 ~~~~ 354 (858)
++..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8754
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=6e-14 Score=129.07 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=70.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~--~i~Gr~I~V~~s~~~~ 353 (858)
+..+|||+|||.++++++|+++|++||.|++|++.. .+|||||+|.+.++|++|++.|++. .+.|++|+|.|++++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 457999999999999999999999999999999864 4899999999999999999999765 5999999999998765
Q ss_pred c
Q 003007 354 A 354 (858)
Q Consensus 354 ~ 354 (858)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 120
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=8.9e-14 Score=129.93 Aligned_cols=79 Identities=28% Similarity=0.448 Sum_probs=72.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 4578999999999999999999999999999987 455789999999999999999999999999999999999987
Q ss_pred Ccc
Q 003007 352 GGA 354 (858)
Q Consensus 352 ~~~ 354 (858)
+..
T Consensus 86 ~~~ 88 (116)
T 2fy1_A 86 PSF 88 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 121
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.1e-14 Score=127.06 Aligned_cols=81 Identities=22% Similarity=0.464 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456799999999999999999999999999999985 455889999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003007 264 SIPKDN 269 (858)
Q Consensus 264 a~pk~~ 269 (858)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 987654
No 122
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.50 E-value=5.1e-14 Score=130.62 Aligned_cols=83 Identities=16% Similarity=0.360 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456799999999999999999999999999998874 56788999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003007 263 FSIPKDNP 270 (858)
Q Consensus 263 ~a~pk~~~ 270 (858)
|+.++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpz_A 101 LKRSKNDS 108 (115)
T ss_dssp CCCCSCCC
T ss_pred EcCCCCcC
Confidence 99876543
No 123
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.50 E-value=7.5e-14 Score=128.81 Aligned_cols=82 Identities=22% Similarity=0.457 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999874 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 003007 262 HFSIPKD 268 (858)
Q Consensus 262 ~~a~pk~ 268 (858)
+|+.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998754
No 124
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=6.4e-14 Score=127.80 Aligned_cols=82 Identities=16% Similarity=0.344 Sum_probs=74.0
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCcc---CCceEE
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDI---AGKRIK 345 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i---~Gr~I~ 345 (858)
.....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3456799999999999999999999999999999873 45789999999999999999999999987 899999
Q ss_pred EEecCCCccc
Q 003007 346 LEPSRPGGAR 355 (858)
Q Consensus 346 V~~s~~~~~r 355 (858)
|++++++..+
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999887543
No 125
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.50 E-value=5e-14 Score=125.07 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=73.0
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe---CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri---t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
...+|||+|||.++++++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4579999999999999999999999999999987 4557899999999999999999999999999999999999886
Q ss_pred cc
Q 003007 353 GA 354 (858)
Q Consensus 353 ~~ 354 (858)
..
T Consensus 87 ~~ 88 (92)
T 2dgv_A 87 SG 88 (92)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 126
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=9.2e-14 Score=127.68 Aligned_cols=84 Identities=20% Similarity=0.447 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhc------CCccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQ------NKPLR 255 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Ln------g~~l~ 255 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..|+ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34557899999999999999999999999999999985 35789999999999999999999999 99999
Q ss_pred cccccccccCCCCCC
Q 003007 256 RRKLDIHFSIPKDNP 270 (858)
Q Consensus 256 gr~L~V~~a~pk~~~ 270 (858)
|++|.|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999876543
No 127
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=7.9e-14 Score=124.19 Aligned_cols=78 Identities=26% Similarity=0.410 Sum_probs=72.2
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
....++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3456799999999999999999999999999999986 5699999999999999999999999999999999998765
Q ss_pred c
Q 003007 354 A 354 (858)
Q Consensus 354 ~ 354 (858)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 128
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=1.3e-14 Score=165.46 Aligned_cols=145 Identities=24% Similarity=0.356 Sum_probs=103.6
Q ss_pred HHHHhhcCCCEEEEEe-------CCCcccEE-----EEEEcCHHHHHHHHHHhcCCccccc-----------cc--cccc
Q 003007 209 LRALFEQYGDIRTLYT-------ACKHRGFV-----MISYYDIRAARTAMRALQNKPLRRR-----------KL--DIHF 263 (858)
Q Consensus 209 Lr~lFs~fG~I~sv~~-------~~ksrG~a-----FV~F~d~e~A~~Al~~Lng~~l~gr-----------~L--~V~~ 263 (858)
|..||..+|.|..|.. ..+..+|+ |+.|....++..++..++......+ .+ .+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6889999999887631 11233444 7788776655544443322221111 00 1111
Q ss_pred cCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 264 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 264 a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
..+...+........+|||+|||..+|+++|+++|++||.|+.|.| ++.++|||||+|.+.++|++||..|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 1222222223334579999999999999999999999999999987 45679999999999999999999999999
Q ss_pred cCCceEEEEecCCCc
Q 003007 339 IAGKRIKLEPSRPGG 353 (858)
Q Consensus 339 i~Gr~I~V~~s~~~~ 353 (858)
|.|+.|.|.++.+..
T Consensus 169 i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 169 IDGRRVLVDVERGRT 183 (437)
T ss_pred ECCEEEEEEEeCCCC
Confidence 999999999998754
No 129
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.3e-14 Score=124.52 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=71.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456799999999999999999999999999999985 35678999999999999999999999999999999999
Q ss_pred ccC
Q 003007 263 FSI 265 (858)
Q Consensus 263 ~a~ 265 (858)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=126.95 Aligned_cols=81 Identities=21% Similarity=0.351 Sum_probs=74.9
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
....+|||+|||..+|+++|+++|++||.|..+..++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 35679999999999999999999999999988877788899999999999999999999999999999999999988764
Q ss_pred c
Q 003007 355 R 355 (858)
Q Consensus 355 r 355 (858)
+
T Consensus 94 ~ 94 (96)
T 1fjc_A 94 T 94 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.4e-14 Score=125.23 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccc--cccccccccCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP 266 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~p 266 (858)
..+.++|||+|||.++++++|+++|++||+|..|++.. .+|||||+|.+.++|++|++.|++..+. +++|.|+|+.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 35679999999999999999999999999999998644 4899999999999999999999999999 99999999987
Q ss_pred CC
Q 003007 267 KD 268 (858)
Q Consensus 267 k~ 268 (858)
+.
T Consensus 93 ~~ 94 (97)
T 1why_A 93 GP 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 132
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.49 E-value=9.4e-14 Score=133.03 Aligned_cols=83 Identities=28% Similarity=0.425 Sum_probs=75.0
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
.....++|||+|||.++|+++|+++|+.||.|++|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3345679999999999999999999999999999987 34568999999999999999999999999999999999
Q ss_pred ecCCCccc
Q 003007 348 PSRPGGAR 355 (858)
Q Consensus 348 ~s~~~~~r 355 (858)
+++++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99887644
No 133
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=126.54 Aligned_cols=81 Identities=20% Similarity=0.437 Sum_probs=73.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE-Ee-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL-YT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv-~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
.+.++|||+|||.++++++|+++|++||.|..+ ++ +++++|||||+|.+.++|++|+..|++..|.|++|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467999999999999999999999999999877 64 456799999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003007 264 SIPKDNP 270 (858)
Q Consensus 264 a~pk~~~ 270 (858)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 134
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-14 Score=126.97 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=72.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEE-EeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i-rit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
...+|||+|||.++|+++|+++|++||.|.+| ++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999888 763 446899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887643
No 135
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=7.9e-14 Score=127.18 Aligned_cols=83 Identities=24% Similarity=0.475 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcc---cccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL---RRRK 258 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l---~gr~ 258 (858)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+ .+++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34556799999999999999999999999999999985 466899999999999999999999999987 8999
Q ss_pred ccccccCCCCC
Q 003007 259 LDIHFSIPKDN 269 (858)
Q Consensus 259 L~V~~a~pk~~ 269 (858)
|.|.|+.++..
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8e-14 Score=123.64 Aligned_cols=77 Identities=29% Similarity=0.412 Sum_probs=71.7
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
....+|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..+.|++|+|+++++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 356799999999999999999999999999999986 56999999999999999999999999999999999987653
No 137
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=125.28 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=70.9
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
....+|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 345799999999999999999999999999999873 4468999999999999999999999999999999999987
Q ss_pred C
Q 003007 351 P 351 (858)
Q Consensus 351 ~ 351 (858)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 138
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5e-14 Score=127.61 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=75.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456799999999999999999999999999999885 356899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003007 264 SIPKDNP 270 (858)
Q Consensus 264 a~pk~~~ 270 (858)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 139
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=125.31 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=74.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhc-CCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCc-ccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQ-YGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRRRKLDIH 262 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~-fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~-l~gr~L~V~ 262 (858)
..+.++|||+|||.++++++|+++|++ ||.|..|++ +++++|||||+|.+.++|++|++.|++.. |.|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456799999999999999999999999 999999885 56789999999999999999999999999 999999999
Q ss_pred ccCCCCC
Q 003007 263 FSIPKDN 269 (858)
Q Consensus 263 ~a~pk~~ 269 (858)
|+.++..
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9977654
No 140
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.49 E-value=4.6e-14 Score=130.32 Aligned_cols=80 Identities=24% Similarity=0.436 Sum_probs=72.7
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.....++|||+|||.++|+++|+++|++||.|++|++. +|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 34456799999999999999999999999999999987 899999999999999999999999999999999999887
Q ss_pred ccc
Q 003007 353 GAR 355 (858)
Q Consensus 353 ~~r 355 (858)
..+
T Consensus 104 ~~r 106 (108)
T 2jvo_A 104 AKR 106 (108)
T ss_dssp C--
T ss_pred CCC
Confidence 543
No 141
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=8.4e-14 Score=128.48 Aligned_cols=80 Identities=28% Similarity=0.398 Sum_probs=73.1
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||..+|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345679999999999999999999999999999986 345689999999999999999999999999999999999
Q ss_pred cCCCc
Q 003007 349 SRPGG 353 (858)
Q Consensus 349 s~~~~ 353 (858)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 142
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=7.9e-14 Score=124.38 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=72.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999999999885 36789999999999999999999999999999999999
Q ss_pred ccCC
Q 003007 263 FSIP 266 (858)
Q Consensus 263 ~a~p 266 (858)
|+.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9863
No 143
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=9e-14 Score=132.55 Aligned_cols=78 Identities=27% Similarity=0.451 Sum_probs=72.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..|.|++|+|++++
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~ 124 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSI 124 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 45789999999999999999999999999999873 5678999999999999999999999999999999999998
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
++.
T Consensus 125 ~~~ 127 (129)
T 2kxn_B 125 TKR 127 (129)
T ss_dssp SSS
T ss_pred CCC
Confidence 765
No 144
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=132.86 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=71.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V~~s~~~~ 353 (858)
+.++|||+|||+++|+++|+++|++||.|++|++.. .+|||||+|++.++|++|++.|++ ..+.|++|+|.+++++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~-~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG-GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 457899999999999999999999999999999864 489999999999999999999984 68999999999998876
Q ss_pred cc
Q 003007 354 AR 355 (858)
Q Consensus 354 ~r 355 (858)
.+
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 145
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-14 Score=126.60 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=70.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||.++|+++|+++|++||.|....+++.++|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 457999999999999999999999999996333456789999999999999999999999999999999999998864
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=5.6e-14 Score=127.20 Aligned_cols=77 Identities=23% Similarity=0.369 Sum_probs=71.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...++|||+|||.++++++|+++|++||.|..+++. +++|||||+|.+.++|++|+..|+|..+.|++|+|.|+.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 346899999999999999999999999999999864 68999999999999999999999999999999999999753
No 147
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=2.5e-14 Score=127.15 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG--~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
.+|||+|||.++++++|+++|++|| +|.++++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 8888874 67889999999999999999999999999999999999998
Q ss_pred CCCC
Q 003007 266 PKDN 269 (858)
Q Consensus 266 pk~~ 269 (858)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 148
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=128.85 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=69.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCC--EEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCc----cccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD--IRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKP----LRRR 257 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~--I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~----l~gr 257 (858)
+..-.+|||+|||+++|+++|+++|++||. |..|++ +++++|||||+|.+.++|++|++.|++.. |.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 455689999999999999999999999995 456653 57899999999999999999999999974 8899
Q ss_pred cccccccCC
Q 003007 258 KLDIHFSIP 266 (858)
Q Consensus 258 ~L~V~~a~p 266 (858)
+|.|+||+.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 149
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=6.9e-14 Score=133.30 Aligned_cols=80 Identities=16% Similarity=0.321 Sum_probs=72.8
Q ss_pred CccceeeeCCCCCCchhHHH----HhhcccCceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~----~~Fs~fG~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
...+|||+|||+.+++++|+ ++|++||.|.+|.+ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|.|+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a 107 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFS 107 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEc
Confidence 45789999999999999876 69999999999987 4578999999999999999999999999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++...
T Consensus 108 ~~~~~~ 113 (127)
T 2a3j_A 108 ETPQSQ 113 (127)
T ss_dssp CCCCHH
T ss_pred cCcchh
Confidence 887643
No 150
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.6e-14 Score=128.34 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=73.0
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
..++|||+|||.++|+++|+++|++||.|.+|++... +|||||+|.+.++|++|++.|||..+.|++|+|+|+++...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 4579999999999999999999999999999998654 89999999999999999999999999999999999988754
No 151
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=6.4e-14 Score=128.58 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=70.0
Q ss_pred CccceeeeCCCC-CCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCC--ccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS--DIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~-~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~--~i~Gr~I~V~~s~~~ 352 (858)
+..+|||+|||+ ++|+++|+++|++||.|++|++.. .++||||+|.+.++|++|++.||+. .+.|++|.|.+++..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 457899999999 999999999999999999999864 4699999999999999999999865 599999999999864
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 152
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.6e-14 Score=123.65 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=73.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
....+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|+|+|+.+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 345667999999999999999999999999999999874 66999999999999999999999999999999999987
Q ss_pred CCC
Q 003007 267 KDN 269 (858)
Q Consensus 267 k~~ 269 (858)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 153
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=1.1e-13 Score=125.05 Aligned_cols=76 Identities=29% Similarity=0.410 Sum_probs=71.0
Q ss_pred CCccceeeeCCCC-CCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 275 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 275 ~~~~tLfV~NLp~-~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...++|||+|||. ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 3567999999998 99999999999999999999993 8999999999999999999999999999999999998753
No 154
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.4e-13 Score=125.38 Aligned_cols=81 Identities=16% Similarity=0.379 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
....+.++|||+|||.++++++|+++|++|| |..|++. ++++|||||+|.+.++|++|+ .|++..|.|++|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 3445679999999999999999999999999 9999852 678999999999999999999 8999999999999
Q ss_pred ccccCCCCC
Q 003007 261 IHFSIPKDN 269 (858)
Q Consensus 261 V~~a~pk~~ 269 (858)
|.++.++..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 155
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=125.41 Aligned_cols=81 Identities=11% Similarity=0.344 Sum_probs=73.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEE-EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccc----
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR-TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK---- 258 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~-sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~---- 258 (858)
..+.++|||+|||.++++++|+++|++||+|. .|++ +++++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35679999999999999999999999999998 8874 5678899999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 003007 259 LDIHFSIPKDN 269 (858)
Q Consensus 259 L~V~~a~pk~~ 269 (858)
|+|.|+.+...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999977543
No 156
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=1.1e-13 Score=131.87 Aligned_cols=82 Identities=24% Similarity=0.448 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567899999999999999999999999999999985 4678999999999999999999999999999999999
Q ss_pred cccCCCC
Q 003007 262 HFSIPKD 268 (858)
Q Consensus 262 ~~a~pk~ 268 (858)
+|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9998754
No 157
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.48 E-value=7.6e-14 Score=124.65 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=72.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|++.|++..+.|++|.|+
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34556799999999999999999999999999999885 35678999999999999999999999999999999999
Q ss_pred ccC
Q 003007 263 FSI 265 (858)
Q Consensus 263 ~a~ 265 (858)
|+.
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 985
No 158
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=126.03 Aligned_cols=79 Identities=23% Similarity=0.357 Sum_probs=72.2
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
....+|||+|||.++|+++|+++|++|| |.+|++. +.++|||||+|.+.++|++|| .|||..+.|+.|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3457999999999999999999999999 9999873 567899999999999999999 9999999999999999
Q ss_pred cCCCccc
Q 003007 349 SRPGGAR 355 (858)
Q Consensus 349 s~~~~~r 355 (858)
++++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 159
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=125.11 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=69.7
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEE--------EEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 341 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~--------iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G 341 (858)
....+|||+|||.++|+++|+++|++||.|.+ |++ ++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34679999999999999999999999999998 765 35678999999999999999999999999999
Q ss_pred ceEEEEecC
Q 003007 342 KRIKLEPSR 350 (858)
Q Consensus 342 r~I~V~~s~ 350 (858)
++|+|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 160
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.48 E-value=5.1e-14 Score=125.26 Aligned_cols=73 Identities=22% Similarity=0.289 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.+.-|||+||++.+|+++|+++|.+||+|.++++ ..++|||||+|.+.++|++|++.||+..+.|++|+|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l-~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHP-YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEE-cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4688999999999999999999999999999986 348999999999999999999999999999999999987
No 161
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.2e-14 Score=121.51 Aligned_cols=75 Identities=29% Similarity=0.449 Sum_probs=70.0
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHh-CCCccCCceEEEEecC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSR 350 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~L-nG~~i~Gr~I~V~~s~ 350 (858)
....+|||+|||.++|+++|+++|++||.|.+|++.. ++|||||+|.+.++|++|++.| +|..+.|++|+|+|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 4567999999999999999999999999999999864 5899999999999999999999 9999999999999975
No 162
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.48 E-value=9.7e-14 Score=126.33 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=72.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCccc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGAR 355 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~r 355 (858)
+.++|||+|||.++|+++|+++|++||.|.+|++. ++||||+|.+.++|++|++.|||..+.|+.|+|++++++..+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 45789999999999999999999999999999986 679999999999999999999999999999999999887654
Q ss_pred c
Q 003007 356 R 356 (858)
Q Consensus 356 ~ 356 (858)
.
T Consensus 87 ~ 87 (103)
T 2dgu_A 87 R 87 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 163
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.2e-14 Score=129.40 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=73.1
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
.....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34456799999999999999999999999999999874 335899999999999999999999999999999999999
Q ss_pred CCC
Q 003007 350 RPG 352 (858)
Q Consensus 350 ~~~ 352 (858)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 875
No 164
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=4.8e-14 Score=127.64 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=71.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
..++|||+|||.++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..+.|++|+|+|++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35789999999999999999999999999999986 56899999999999999999999999999999999998763
No 165
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=8.7e-14 Score=129.52 Aligned_cols=77 Identities=21% Similarity=0.397 Sum_probs=70.2
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 45689999999999999999999999999999999999
Q ss_pred cC
Q 003007 349 SR 350 (858)
Q Consensus 349 s~ 350 (858)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 166
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.7e-14 Score=125.31 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=72.6
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
.+.++|||+|||.++|+++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.|||..+.|++|+|++++++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 3557999999999999999999999999999999864 58999999999999999999999999999999999998864
No 167
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=125.16 Aligned_cols=80 Identities=30% Similarity=0.515 Sum_probs=73.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...+.++|||+|||.++++++|+++|++||+|..|++. +.+|||||+|.+.++|++|++.|++..|.|++|.|+|+.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 34567999999999999999999999999999999764 56899999999999999999999999999999999999875
Q ss_pred C
Q 003007 268 D 268 (858)
Q Consensus 268 ~ 268 (858)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 168
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.47 E-value=8.9e-14 Score=127.83 Aligned_cols=81 Identities=20% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+..|+|..|.|++|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456799999999999999999999999999999985 46678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003007 263 FSIPKD 268 (858)
Q Consensus 263 ~a~pk~ 268 (858)
|+.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 997654
No 169
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=131.80 Aligned_cols=80 Identities=28% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr----~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
..++++|||+|||+.+++++|+ ++|++||+|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4567999999999999999876 69999999999885 46889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003007 263 FSIPKD 268 (858)
Q Consensus 263 ~a~pk~ 268 (858)
|+.++.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 170
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=128.08 Aligned_cols=80 Identities=13% Similarity=0.303 Sum_probs=72.3
Q ss_pred CCCccceeeeCCCCCCchhHHH---HhhcccCceEEEEeCC--------CCccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLR---QIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~---~~Fs~fG~I~~irit~--------~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (858)
.....+|||+|||.++++++|+ ++|++||.|.+|++.. .++|||||+|.+.++|++|++.|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 9999999999998742 3458999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003007 343 RIKLEPSRPGG 353 (858)
Q Consensus 343 ~I~V~~s~~~~ 353 (858)
+|+|+++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998764
No 171
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2e-13 Score=123.26 Aligned_cols=77 Identities=27% Similarity=0.376 Sum_probs=71.5
Q ss_pred CCccceeeeCCCCCCchhHHHHhhccc--CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~f--G~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
...++|||+|||.++|+++|+++|++| |.|..|++. +|||||+|.+.++|++|++.|||..+.|++|+|++++++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 345799999999999999999999999 999999874 789999999999999999999999999999999999886
Q ss_pred cc
Q 003007 353 GA 354 (858)
Q Consensus 353 ~~ 354 (858)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 172
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.47 E-value=9e-14 Score=122.10 Aligned_cols=78 Identities=12% Similarity=0.325 Sum_probs=71.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..++|||+|||.++++++|+++|++||.|..+++. ++++|||||+|.+.++|++|+..|+|..+.|++|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35899999999999999999999999999999841 228999999999999999999999999999999999999
Q ss_pred CCCC
Q 003007 265 IPKD 268 (858)
Q Consensus 265 ~pk~ 268 (858)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 173
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=120.77 Aligned_cols=78 Identities=22% Similarity=0.414 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHh-cCCccccccccccccC
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRKLDIHFSI 265 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~L-ng~~l~gr~L~V~~a~ 265 (858)
....+.++|||+|||.++++++|+++|++||+|..|++. +++|||||+|.+.++|++|++.| ++..+.|++|+|+|++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345667999999999999999999999999999999864 46899999999999999999999 9999999999999973
No 174
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.1e-13 Score=127.36 Aligned_cols=77 Identities=21% Similarity=0.275 Sum_probs=71.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCC-----ceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-----KRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G-----r~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|+.|++... |||||+|.+.++|++||+.|||..|.| +.|+|++++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 4578999999999999999999999999999998654 999999999999999999999999999 999999998
Q ss_pred CCcc
Q 003007 351 PGGA 354 (858)
Q Consensus 351 ~~~~ 354 (858)
++..
T Consensus 92 ~~~~ 95 (108)
T 1x4c_A 92 PRSP 95 (108)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8653
No 175
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.47 E-value=4.3e-14 Score=128.42 Aligned_cols=76 Identities=20% Similarity=0.228 Sum_probs=71.1
Q ss_pred ccceeeeCCCC------CCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCC-ceE
Q 003007 277 QGTLVVFNLDP------SVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRI 344 (858)
Q Consensus 277 ~~tLfV~NLp~------~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G-r~I 344 (858)
.++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56899999999 9999999999999999999987 36789999999999999999999999999999 999
Q ss_pred EEEecCCC
Q 003007 345 KLEPSRPG 352 (858)
Q Consensus 345 ~V~~s~~~ 352 (858)
+|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99998764
No 176
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=123.96 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
....++|||+|||.++++++|+++|++||.|....+.++++|||||+|.+.++|++|++.|+|..|.|++|.|.|+.++.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 34578999999999999999999999999996333467889999999999999999999999999999999999998754
No 177
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=9.3e-14 Score=126.30 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=73.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhcc-cCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCc-cCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSD-IAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~-fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~-i~Gr~I~V~~s 349 (858)
...+|||+|||.++|+++|+++|++ ||.|.+|++ ++.++|||||+|.+.++|++|++.|||.. +.|+.|+|+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 4578999999999999999999999 999999987 45678999999999999999999999999 99999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
.++..+
T Consensus 88 ~~~~~~ 93 (104)
T 2dhg_A 88 IPKASR 93 (104)
T ss_dssp CCCCSC
T ss_pred cCCCcC
Confidence 877644
No 178
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=126.64 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=72.0
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|||+|||.++|+++|+++|++||.|++|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|++++.
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 45799999999999999999999999999999863 34688999999999999999999999999999999999976
Q ss_pred Ccc
Q 003007 352 GGA 354 (858)
Q Consensus 352 ~~~ 354 (858)
...
T Consensus 94 ~~~ 96 (114)
T 2do0_A 94 ALP 96 (114)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 179
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=128.34 Aligned_cols=81 Identities=21% Similarity=0.415 Sum_probs=74.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|+|..|.|++|.|.|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 345799999999999999999999999999999885 5668899999999999999999999999999999999999
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 180
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=127.19 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=72.5
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
.+...++|||+|||.++|+++|+++|++||.|++|++. +.++|||||+|.+.++|++|++.|++ .+.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 34456799999999999999999999999999999873 45789999999999999999999998 8999999999
Q ss_pred ecCCCc
Q 003007 348 PSRPGG 353 (858)
Q Consensus 348 ~s~~~~ 353 (858)
++.+..
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997754
No 181
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=9.2e-14 Score=132.83 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.4
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCcc
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGGA 354 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~-aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s~~~~~ 354 (858)
-.|||+||++.+|+++|+++|++||.|.+|++..+++|+ |||+|.+.++|++|++.|||..|.| ++|+|+|+++...
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 368899999999999999999999999999987667787 9999999999999999999999998 9999999998753
No 182
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=4.8e-14 Score=127.65 Aligned_cols=76 Identities=28% Similarity=0.408 Sum_probs=71.8
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
++|||+|||.++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|++.|||..+.|+.|+|++++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 3799999999999999999999999999999866578999999999999999999999999999999999998865
No 183
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=9e-14 Score=128.89 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=71.1
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
..++|||+|||.++|+++|+++|++||.|..|++. ..++||||+|.+.++|++|++.|||..+.|+.|.|+|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 35689999999999999999999999999999986 47899999999999999999999999999999999998764
No 184
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.46 E-value=1.1e-13 Score=130.34 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=73.7
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..|.|+.|+|+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 34579999999999999999999999999999987 4556899999999999999999999999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
.++..+
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 776543
No 185
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=6.1e-14 Score=125.67 Aligned_cols=81 Identities=22% Similarity=0.379 Sum_probs=75.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...+.++|||+|||.++++++|+++|++||+|..+..+++++|||||+|.+.++|++|+..|++..|.|++|.|.|+.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 34567999999999999999999999999999888667889999999999999999999999999999999999999775
Q ss_pred C
Q 003007 268 D 268 (858)
Q Consensus 268 ~ 268 (858)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 186
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-14 Score=131.50 Aligned_cols=77 Identities=21% Similarity=0.437 Sum_probs=71.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..++|||+|||.++|+++|+++|+.||.|..|++. +.++|||||+|.+.++|++|| .|||..|.|+.|+|++++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 45799999999999999999999999999999874 567899999999999999999 999999999999999987
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 187
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.7e-13 Score=125.97 Aligned_cols=83 Identities=24% Similarity=0.397 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
..+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.+++ .|.|++|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34567799999999999999999999999999999985 466899999999999999999999998 899999999
Q ss_pred cccCCCCCC
Q 003007 262 HFSIPKDNP 270 (858)
Q Consensus 262 ~~a~pk~~~ 270 (858)
+|+.++..+
T Consensus 91 ~~a~~~~~~ 99 (116)
T 2cqd_A 91 NLAYLGAKP 99 (116)
T ss_dssp EESTTTCCC
T ss_pred EEcccCCCc
Confidence 999775543
No 188
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=127.84 Aligned_cols=81 Identities=26% Similarity=0.377 Sum_probs=73.1
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceE--------EEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--------EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~--------~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
....++|||+|||.++|+++|+++|++||.|. .|++ ++.++|||||+|.+.++|++|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34567999999999999999999999999998 5765 3456899999999999999999999999999
Q ss_pred CceEEEEecCCCcc
Q 003007 341 GKRIKLEPSRPGGA 354 (858)
Q Consensus 341 Gr~I~V~~s~~~~~ 354 (858)
|+.|+|++++++..
T Consensus 92 g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 GSKLKVSLARKKPP 105 (113)
T ss_dssp TEECEEECSSCCCC
T ss_pred CCEEEEEECCCCCC
Confidence 99999999988754
No 189
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.46 E-value=1.4e-13 Score=128.01 Aligned_cols=79 Identities=15% Similarity=0.346 Sum_probs=71.9
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999985 3577999999999999999999999999999999999
Q ss_pred cccC
Q 003007 262 HFSI 265 (858)
Q Consensus 262 ~~a~ 265 (858)
+|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 190
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.46 E-value=1.5e-13 Score=134.33 Aligned_cols=82 Identities=28% Similarity=0.478 Sum_probs=75.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
....++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..|+|..|.|++|.|.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345799999999999999999999999999999985 567999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003007 264 SIPKDNP 270 (858)
Q Consensus 264 a~pk~~~ 270 (858)
+.++..+
T Consensus 147 a~~~~~~ 153 (158)
T 2kn4_A 147 ARYGRPP 153 (158)
T ss_dssp ECCSSCC
T ss_pred CCCCCCC
Confidence 9876543
No 191
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.46 E-value=1.9e-13 Score=124.38 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
..+.++|||+|||.++++++|+++|++||+|..|++. ++||||+|.+.++|++|++.|++..|.|++|.|.|+.++.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 3567999999999999999999999999999999864 7899999999999999999999999999999999998765
Q ss_pred CC
Q 003007 269 NP 270 (858)
Q Consensus 269 ~~ 270 (858)
..
T Consensus 85 ~~ 86 (103)
T 2dgu_A 85 QK 86 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 192
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.46 E-value=3.9e-14 Score=128.70 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCC------CCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccc-cc
Q 003007 191 PSRTLFVRNINS------NVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RK 258 (858)
Q Consensus 191 ~s~tLfV~NLP~------~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g-r~ 258 (858)
.+++|||+|||. ++++++|+++|++||.|.+|++ +++++|||||+|.+.++|++|++.|+|..|.| ++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 9999999999999999999985 47899999999999999999999999999999 99
Q ss_pred ccccccCCC
Q 003007 259 LDIHFSIPK 267 (858)
Q Consensus 259 L~V~~a~pk 267 (858)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998654
No 193
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=125.92 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=70.6
Q ss_pred CccceeeeCCCCCC------chhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEE
Q 003007 276 NQGTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIK 345 (858)
Q Consensus 276 ~~~tLfV~NLp~~v------TeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr-~I~ 345 (858)
..++|||+|||..+ |+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 45789999999999 789999999999999999874 46789999999999999999999999999998 999
Q ss_pred EEecCCC
Q 003007 346 LEPSRPG 352 (858)
Q Consensus 346 V~~s~~~ 352 (858)
|+++...
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9998754
No 194
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=125.41 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=74.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhc--CCcccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTA------CKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLD 260 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~-I~sv~~~------~ksrG~aFV~F~d~e~A~~Al~~Ln--g~~l~gr~L~ 260 (858)
.+.++|||+|||.++++++|+++|++||. |..|.+. ++++|||||+|.+.++|++|++.|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45799999999999999999999999998 9999853 4789999999999999999999996 5899999999
Q ss_pred ccccCCCCCCC
Q 003007 261 IHFSIPKDNPS 271 (858)
Q Consensus 261 V~~a~pk~~~~ 271 (858)
|.|+.++..+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99998876543
No 195
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=1.6e-13 Score=123.88 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~s--------v~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l 254 (858)
...+.++|||+|||.++++++|+++|++||.|.. +++ +++++|||||+|.+.++|++|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3456799999999999999999999999999988 663 467899999999999999999999999999
Q ss_pred ccccccccccC
Q 003007 255 RRRKLDIHFSI 265 (858)
Q Consensus 255 ~gr~L~V~~a~ 265 (858)
.|++|+|++|.
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 196
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.46 E-value=1.3e-13 Score=121.51 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=70.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|+ .|||..+.|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3568999999999999999999999999999976 4566899999999999999999 999999999999999997
Q ss_pred CC
Q 003007 351 PG 352 (858)
Q Consensus 351 ~~ 352 (858)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 197
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.46 E-value=1.5e-13 Score=129.44 Aligned_cols=83 Identities=18% Similarity=0.464 Sum_probs=75.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||.|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3456789999999999999999999999999999985 56679999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003007 263 FSIPKDNP 270 (858)
Q Consensus 263 ~a~pk~~~ 270 (858)
|+.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99776543
No 198
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.46 E-value=9.1e-14 Score=124.60 Aligned_cols=80 Identities=24% Similarity=0.597 Sum_probs=73.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEe--CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr----~lFs~fG~I~sv~~--~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
..++++|||+|||.++++++|+ ++|++||.|..|++ +++++|||||+|.+.++|++|+..|+|..+.|++|+|+
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4578999999999999999999 99999999999985 34678999999999999999999999999999999999
Q ss_pred ccCCCC
Q 003007 263 FSIPKD 268 (858)
Q Consensus 263 ~a~pk~ 268 (858)
|+.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 199
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.7e-13 Score=124.93 Aligned_cols=83 Identities=23% Similarity=0.416 Sum_probs=75.2
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+.. ++..|.|++|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567799999999999999999999999999999874 467889999999999999999998 999999999999
Q ss_pred cccCCCCCC
Q 003007 262 HFSIPKDNP 270 (858)
Q Consensus 262 ~~a~pk~~~ 270 (858)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887644
No 200
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=120.96 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=70.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+.|++.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46799999999999999999999999999999984 4677999999999999999999999999999999999886
Q ss_pred C
Q 003007 265 I 265 (858)
Q Consensus 265 ~ 265 (858)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 201
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=124.72 Aligned_cols=82 Identities=18% Similarity=0.375 Sum_probs=73.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
...+.++|||+|||.++++++|+++|++||.|..+.. +++++|||||+|.+.++|++|+..|++..|.|++|+|+|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 4456899999999999999999999999999954432 567899999999999999999999999999999999999987
Q ss_pred CCC
Q 003007 267 KDN 269 (858)
Q Consensus 267 k~~ 269 (858)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 202
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=7.6e-14 Score=130.19 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC--CccccccccccccC
Q 003007 189 EHPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRRKLDIHFSI 265 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~-vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng--~~l~gr~L~V~~a~ 265 (858)
..++++|||+|||++ +++++|+++|++||+|.+|++ .+.+|||||+|.+.++|++|++.|++ ..|.|++|+|.|+.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i-~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYIL-MRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEE-ETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEE-ecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 557899999999998 999999999999999999986 46799999999999999999999875 45999999999997
Q ss_pred CCCC
Q 003007 266 PKDN 269 (858)
Q Consensus 266 pk~~ 269 (858)
.+..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6543
No 203
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.46 E-value=9.2e-14 Score=125.00 Aligned_cols=77 Identities=29% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCccceeeeCCCC-CCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 275 LNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 275 ~~~~tLfV~NLp~-~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...++|||+|||. .+|+++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|||..+.|++|+|+++++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3567999999998 99999999999999999999984 8999999999999999999999999999999999997764
Q ss_pred c
Q 003007 354 A 354 (858)
Q Consensus 354 ~ 354 (858)
.
T Consensus 85 ~ 85 (96)
T 2kvi_A 85 R 85 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 204
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=2.3e-13 Score=123.68 Aligned_cols=82 Identities=20% Similarity=0.403 Sum_probs=73.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|++..|.|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445679999999999999999999999997 998875 4678999999999999999999 89999999999999
Q ss_pred cccCCCCCC
Q 003007 262 HFSIPKDNP 270 (858)
Q Consensus 262 ~~a~pk~~~ 270 (858)
.|+.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999876543
No 205
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.3e-13 Score=123.68 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++|+++|+++|++|| |.+|++ ++.++|||||+|.+.++|++|+ .|||..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3467999999999999999999999997 999987 3567899999999999999999 89999999999999999
Q ss_pred CCCccc
Q 003007 350 RPGGAR 355 (858)
Q Consensus 350 ~~~~~r 355 (858)
+++..+
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 886543
No 206
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.7e-14 Score=126.69 Aligned_cols=80 Identities=23% Similarity=0.396 Sum_probs=73.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4578999999999999999999999999999976 34568999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
+...+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 87654
No 207
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.4e-13 Score=123.83 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCcEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEeC--CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELR----ALFEQYGDIRTLYTA--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr----~lFs~fG~I~sv~~~--~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..++|||+|||.++++++|+ ++|++||+|.+|++. ...+|||||+|.+.++|++|++.|+|..+.|++|+|.|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 46899999999999999999 999999999999863 223899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 003007 265 IPKDNP 270 (858)
Q Consensus 265 ~pk~~~ 270 (858)
.+...+
T Consensus 88 ~~~~~~ 93 (96)
T 2dgx_A 88 TGASGP 93 (96)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 208
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.4e-13 Score=124.63 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=73.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456799999999999999999999999999999874 456789999999999999999999999999999999999
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 209
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=125.05 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=71.8
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.....+|||+|||.++|+++|+++|++||.|.-++. ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345679999999999999999999999998844333 5667999999999999999999999999999999999999887
Q ss_pred cc
Q 003007 353 GA 354 (858)
Q Consensus 353 ~~ 354 (858)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 210
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.8e-13 Score=124.53 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=72.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccc-----ccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-----RKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g-----r~L~V~~ 263 (858)
....++|||+|||.++++++|+++|++||+|..|++... |||||+|.+.++|++|++.|++..|.| ++|.|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 456799999999999999999999999999999987443 999999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 003007 264 SIPKDN 269 (858)
Q Consensus 264 a~pk~~ 269 (858)
+.++..
T Consensus 90 a~~~~~ 95 (108)
T 1x4c_A 90 DGPRSP 95 (108)
T ss_dssp SSCCSC
T ss_pred CCCCCC
Confidence 987653
No 211
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=1.9e-13 Score=133.66 Aligned_cols=80 Identities=23% Similarity=0.298 Sum_probs=73.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|+.|++ ++.+++||||+|.+.++|++||+.|||..|.|+.|+|+|++
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999987 45678999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
+...+
T Consensus 118 ~~~~~ 122 (156)
T 1h2v_Z 118 GFKEG 122 (156)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 76543
No 212
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=2.3e-13 Score=125.15 Aligned_cols=80 Identities=14% Similarity=0.302 Sum_probs=73.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
....++|||+|||.++++++|+++|++||.|..|++.. .+|||||+|.+.++|++|++.|++..|.|++|.|.|+.++.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 34578999999999999999999999999999998644 38999999999999999999999999999999999998765
Q ss_pred C
Q 003007 269 N 269 (858)
Q Consensus 269 ~ 269 (858)
.
T Consensus 101 ~ 101 (109)
T 1x4g_A 101 D 101 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 213
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=8e-14 Score=129.23 Aligned_cols=77 Identities=13% Similarity=0.284 Sum_probs=71.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
.++.++|||+|||.++++++|+++|++||.|..|.+. +++|||||+|.+.++|++|++.|+|..|.|++|.|+|+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3456899999999999999999999999999999764 5899999999999999999999999999999999999864
No 214
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=126.54 Aligned_cols=82 Identities=22% Similarity=0.385 Sum_probs=74.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEE--------EEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIR--------TLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~--------sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l 254 (858)
...+.++|||+|||.++++++|+++|++||.|. .|++ +++++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456779999999999999999999999999998 4663 467899999999999999999999999999
Q ss_pred ccccccccccCCCCC
Q 003007 255 RRRKLDIHFSIPKDN 269 (858)
Q Consensus 255 ~gr~L~V~~a~pk~~ 269 (858)
.|++|.|.|+.++..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 215
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.1e-13 Score=127.68 Aligned_cols=81 Identities=22% Similarity=0.402 Sum_probs=73.7
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
......++|||+|||.++++++|+++|++||+|..|++ ...++|||||+|.+.++|++|++.|+|..+.|++|.|+|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34556799999999999999999999999999999885 244789999999999999999999999999999999999
Q ss_pred cCCC
Q 003007 264 SIPK 267 (858)
Q Consensus 264 a~pk 267 (858)
+.++
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9765
No 216
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=124.28 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=69.9
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999999875432 4567899999999999999999999999999999999998
Q ss_pred CCC
Q 003007 350 RPG 352 (858)
Q Consensus 350 ~~~ 352 (858)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 764
No 217
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.3e-13 Score=120.66 Aligned_cols=78 Identities=19% Similarity=0.406 Sum_probs=72.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
..+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|++|++.|++..+.|++|.|+|+.++.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3567999999999999999999999999999999874 5699999999999999999999999999999999998764
Q ss_pred C
Q 003007 269 N 269 (858)
Q Consensus 269 ~ 269 (858)
.
T Consensus 83 ~ 83 (90)
T 2dnp_A 83 K 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 218
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=124.77 Aligned_cols=78 Identities=24% Similarity=0.370 Sum_probs=71.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceE-EEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce----EE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK-EIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR----IK 345 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~-~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~----I~ 345 (858)
..++|||+|||.++++++|+++|++||.|. +|++ ++.++|||||+|.+.++|++|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 457999999999999999999999999999 9876 4567899999999999999999999999999999 99
Q ss_pred EEecCCCc
Q 003007 346 LEPSRPGG 353 (858)
Q Consensus 346 V~~s~~~~ 353 (858)
|.|+++..
T Consensus 88 v~~a~~~~ 95 (99)
T 2div_A 88 LNYATYSG 95 (99)
T ss_dssp EEETTCCS
T ss_pred EeecCCCC
Confidence 99998764
No 219
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=127.13 Aligned_cols=80 Identities=29% Similarity=0.373 Sum_probs=72.5
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCce----EEEEe-CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I----~~iri-t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.| ..+++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|++++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 45799999999999999999999999998 55543 67789999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
++..+
T Consensus 104 ~~~~~ 108 (115)
T 2cpx_A 104 NKKQR 108 (115)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 87543
No 220
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.45 E-value=9.8e-14 Score=124.39 Aligned_cols=79 Identities=22% Similarity=0.431 Sum_probs=72.9
Q ss_pred CccceeeeCCCCCCchhHHH----HhhcccCceEEEEeC--CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLR----QIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~----~~Fs~fG~I~~irit--~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
+..+|||+|||.++++++|+ ++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 86 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45789999999999999999 999999999999874 356899999999999999999999999999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
+++..
T Consensus 87 ~~~~~ 91 (97)
T 1nu4_A 87 KTDSD 91 (97)
T ss_dssp SSCCT
T ss_pred cCCCc
Confidence 88754
No 221
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.1e-14 Score=124.60 Aligned_cols=78 Identities=27% Similarity=0.370 Sum_probs=70.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCc-eEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC-CccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR-SDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~-I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG-~~i~Gr~I~V~~s~~~~ 353 (858)
..++|||+|||.++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++|++.||| ..+.|++|+|++++++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 4578999999999999999999999999 666666 3689999999999999999999999 99999999999998875
Q ss_pred cc
Q 003007 354 AR 355 (858)
Q Consensus 354 ~r 355 (858)
.+
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 222
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.5e-13 Score=123.64 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=71.5
Q ss_pred CCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 189 EHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 189 ~~~s~tLfV~NLP~-~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
..+.++|||+|||. ++++++|+++|++||.|..|++ .+|||||+|.+.++|++|+..|++..+.|++|.|+|+.++
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE---ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 35679999999998 9999999999999999999987 4899999999999999999999999999999999999775
Q ss_pred CCC
Q 003007 268 DNP 270 (858)
Q Consensus 268 ~~~ 270 (858)
..+
T Consensus 84 ~~~ 86 (96)
T 2kvi_A 84 ARP 86 (96)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 223
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.45 E-value=2.3e-13 Score=130.32 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=75.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456799999999999999999999999999999885 46679999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 003007 263 FSIPKDNP 270 (858)
Q Consensus 263 ~a~pk~~~ 270 (858)
|+.++...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 224
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=131.11 Aligned_cols=83 Identities=19% Similarity=0.381 Sum_probs=74.6
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--EEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCC----cc
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--LYT-----ACKHRGFVMISYYDIRAARTAMRALQNK----PL 254 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~s--v~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~----~l 254 (858)
+....+.++|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+. +|++|+..|++. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344567799999999999999999999999999966 663 678999999999999 999999999999 99
Q ss_pred ccccccccccCCCCC
Q 003007 255 RRRKLDIHFSIPKDN 269 (858)
Q Consensus 255 ~gr~L~V~~a~pk~~ 269 (858)
.|++|.|+|+.++..
T Consensus 96 ~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 DGKTINVEFAKGSKR 110 (131)
T ss_dssp GGCCCCCEECCCSCC
T ss_pred CCEEEEEEECCCCCC
Confidence 999999999987654
No 225
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.45 E-value=2.5e-13 Score=122.74 Aligned_cols=77 Identities=25% Similarity=0.396 Sum_probs=71.3
Q ss_pred CCCCCcEEEEeCCCC-CCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 188 GEHPSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~-~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
...++++|||+|||. ++++++|+++|++||.|..+++ .+|||||+|.+.++|++|+..|+|..+.|++|.|+|+.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345689999999998 9999999999999999999987 489999999999999999999999999999999999875
Q ss_pred C
Q 003007 267 K 267 (858)
Q Consensus 267 k 267 (858)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 226
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.45 E-value=4.4e-13 Score=126.07 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=72.4
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...++|||+|||..+++++|+++|++||.|++|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 345799999999999999999999999999999873 4578999999999999999999999999999999999998
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
+..
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 754
No 227
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.45 E-value=1.9e-13 Score=124.89 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=69.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||..+|+++|+++|++||.|++|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|+|+++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4579999999999999999999999999999976 34568999999999999999999999999999999999975
No 228
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.4e-13 Score=123.17 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=73.3
Q ss_pred CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe--CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 273 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 273 ~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri--t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
......+|||+|||.++|+++|+++|+.|+.|.-++. ++.++|||||+|.+.++|++||+.|||..|.|+.|+|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3446689999999999999999999999987666653 56678999999999999999999999999999999999998
Q ss_pred CCccc
Q 003007 351 PGGAR 355 (858)
Q Consensus 351 ~~~~r 355 (858)
++..+
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87543
No 229
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=9.8e-14 Score=125.87 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=69.0
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...++|||+|||.++++++|+++|+.|| |.+|++. ++++|||||+|.+.++|++|+ .|||..+.|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3457999999999999999999999999 9999873 456899999999999999999 8999999999999999
Q ss_pred cCCCc
Q 003007 349 SRPGG 353 (858)
Q Consensus 349 s~~~~ 353 (858)
++++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 230
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=9.8e-14 Score=129.43 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=70.1
Q ss_pred CccceeeeCCCCC-CchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCC--CccCCceEEEEecCCC
Q 003007 276 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR--SDIAGKRIKLEPSRPG 352 (858)
Q Consensus 276 ~~~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG--~~i~Gr~I~V~~s~~~ 352 (858)
+..+|||+|||++ +|+++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|++ ..+.|++|+|.+++.+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 4579999999998 9999999999999999999985 4689999999999999999999864 5699999999999876
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 103 ~ 103 (112)
T 1x4f_A 103 K 103 (112)
T ss_dssp S
T ss_pred c
Confidence 4
No 231
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.7e-14 Score=127.57 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|+|..+.|++|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 45689999999999999999999999999988874 4667999999999999999999999999999999999999
Q ss_pred CCCC
Q 003007 265 IPKD 268 (858)
Q Consensus 265 ~pk~ 268 (858)
.++.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 232
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.44 E-value=1.5e-13 Score=126.95 Aligned_cols=79 Identities=24% Similarity=0.494 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
..+.+.++|||+|||.++++++|+++|++||+|..|++. +|||||+|.+.++|++|+..|+|..+.|++|.|.|+.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 445678999999999999999999999999999999875 89999999999999999999999999999999999987
Q ss_pred CC
Q 003007 267 KD 268 (858)
Q Consensus 267 k~ 268 (858)
+.
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 233
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=3.9e-13 Score=121.01 Aligned_cols=76 Identities=20% Similarity=0.392 Sum_probs=70.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
...+|||+|| ++|+++|+++|++||.|.+|++ ..++|||||+|.+.++|++|++.|||..+.|++|+|++++++..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 4579999996 8999999999999999999998 46789999999999999999999999999999999999987653
No 234
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=2.1e-13 Score=125.94 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=70.7
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
....++|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.+ +..+.|+.|+|++
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 3456799999999999999999999999999999873 567899999999999999999986 5999999999999
Q ss_pred cCCCccc
Q 003007 349 SRPGGAR 355 (858)
Q Consensus 349 s~~~~~r 355 (858)
+.++..+
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887643
No 235
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=125.66 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=70.4
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
.....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|+. ++|..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3456799999999999999999999999999999874 5578999999999999999999 9999999999999987
Q ss_pred CC
Q 003007 350 RP 351 (858)
Q Consensus 350 ~~ 351 (858)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 236
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.44 E-value=2.5e-13 Score=124.10 Aligned_cols=78 Identities=22% Similarity=0.429 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456799999999999999999999999999999874 467899999999999999999999999999999999999
Q ss_pred cC
Q 003007 264 SI 265 (858)
Q Consensus 264 a~ 265 (858)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 237
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.44 E-value=3.8e-14 Score=133.10 Aligned_cols=77 Identities=25% Similarity=0.446 Sum_probs=70.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|+ .|||..+.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3478999999999999999999999999999976 4567999999999999999999 899999999999999998
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 238
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.44 E-value=2.2e-13 Score=119.97 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=70.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|+ .|++..+.|++|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999874 5678999999999999999999 899999999999999987
Q ss_pred CC
Q 003007 266 PK 267 (858)
Q Consensus 266 pk 267 (858)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 239
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=1.4e-13 Score=124.82 Aligned_cols=79 Identities=18% Similarity=0.387 Sum_probs=69.3
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe------CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~------~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
.....++|||+|||.++++++|+++|++|| |..|++ +++++|||||+|.+.++|++|+ .|+|..|.|++|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345679999999999999999999999999 999985 4567999999999999999999 89999999999999
Q ss_pred cccCCCC
Q 003007 262 HFSIPKD 268 (858)
Q Consensus 262 ~~a~pk~ 268 (858)
+++.++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9997653
No 240
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=123.11 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC-EEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC-CccccccccccccCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLYTACKHRGFVMISYYDIRAARTAMRALQN-KPLRRRKLDIHFSIPK 267 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~-I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng-~~l~gr~L~V~~a~pk 267 (858)
.+.++|||+|||.++++++|+++|++||+ |..+.+ .++|||||+|.+.++|++|++.|++ ..+.|++|+|.|+.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 46799999999999999999999999999 665544 4789999999999999999999999 9999999999999876
Q ss_pred CCC
Q 003007 268 DNP 270 (858)
Q Consensus 268 ~~~ 270 (858)
...
T Consensus 84 ~~~ 86 (93)
T 2cqh_A 84 KLR 86 (93)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=126.15 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=73.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCE----EEEE-eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLY-TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I----~sv~-~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||.| ..++ .+++++|||||+|.+.++|++|++.|++..|.|++|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999998 4444 4788999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 003007 264 SIPKDNP 270 (858)
Q Consensus 264 a~pk~~~ 270 (858)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 242
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.6e-13 Score=120.82 Aligned_cols=78 Identities=21% Similarity=0.406 Sum_probs=72.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcC--CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQY--GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~f--G~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
..+.++|||+|||.++++++|+++|++| |.|..|++ .+|||||+|.+.++|++|+..|++..|.|++|.|.|+.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE---CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE---eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 3467999999999999999999999999 99999875 478999999999999999999999999999999999987
Q ss_pred CCC
Q 003007 267 KDN 269 (858)
Q Consensus 267 k~~ 269 (858)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 243
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=118.41 Aligned_cols=71 Identities=15% Similarity=0.362 Sum_probs=65.5
Q ss_pred CcEEEEeCCCCCC------CHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccc-cccc
Q 003007 192 SRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDI 261 (858)
Q Consensus 192 s~tLfV~NLP~~v------teeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr-~L~V 261 (858)
+++|||+|||..+ ++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 77999999999999999985 457899999999999999999999999999999 8887
Q ss_pred c
Q 003007 262 H 262 (858)
Q Consensus 262 ~ 262 (858)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 244
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4e-13 Score=124.23 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=70.7
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCcc--------CCc
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDI--------AGK 342 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i--------~Gr 342 (858)
....+|||+|||.++|+++|+++|++||.|..|++ ++.++|||||+|.+.++|++|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 35579999999999999999999999999999987 345689999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 003007 343 RIKLEPSRPG 352 (858)
Q Consensus 343 ~I~V~~s~~~ 352 (858)
.|.|+|+++.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999865
No 245
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.43 E-value=3.5e-13 Score=130.95 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=74.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...+.++|||+|||+++++++|+++|++||+|..|++...++|||||+|.+.++|++|+..|+|..|.|++|+|.|+.++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 44567999999999999999999999999999999987668999999999999999999999999999999999999765
No 246
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=124.55 Aligned_cols=80 Identities=33% Similarity=0.473 Sum_probs=72.7
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
....++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++||+. ++..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 345679999999999999999999999999999976 345689999999999999999998 99999999999999
Q ss_pred cCCCcc
Q 003007 349 SRPGGA 354 (858)
Q Consensus 349 s~~~~~ 354 (858)
+.++..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 987754
No 247
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=1.2e-13 Score=117.95 Aligned_cols=70 Identities=20% Similarity=0.340 Sum_probs=65.3
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ |+|..+.|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999976 45678999999999999999998 9999999999999875
No 248
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.43 E-value=2e-13 Score=135.29 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=70.6
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-CCCccEEEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s~~~~ 353 (858)
..+|||+||++.+|+++|+++|++||+|++|++. +.+++||||+|.+.++|++|++.|||..|.| ++|+|+|++++.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 3579999999999999999999999999999985 4457899999999999999999999999965 999999999874
No 249
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.43 E-value=1.3e-13 Score=128.48 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=71.6
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCC-CEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYG-DIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG-~I~sv~~-~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
...++|||+|||+++++++|+++|++|| +|..+.+ ..+++|||||+|.+.++|++|++.|+|..|.|++|+|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3568999999999999999999999999 8999887 467899999999999999999999999999999999999864
No 250
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=9.4e-14 Score=124.03 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=67.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++|+++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3478999999999999999999999999876543 45678999999999999999999999999999999999986
Q ss_pred C
Q 003007 351 P 351 (858)
Q Consensus 351 ~ 351 (858)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 251
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.43 E-value=2.8e-13 Score=119.10 Aligned_cols=75 Identities=27% Similarity=0.401 Sum_probs=67.7
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ +++..+.|+.|+|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 345679999999999999999999999999999986 35678999999999999999996 588899999999987
Q ss_pred c
Q 003007 349 S 349 (858)
Q Consensus 349 s 349 (858)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 252
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.5e-13 Score=124.44 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=72.1
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCc-eEEEEeC------CCCccEEEEEEcCHHHHHHHHHHhC--CCccCCceEEE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRET------PHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKL 346 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~-I~~irit------~~srG~aFVeF~d~e~A~kAl~~Ln--G~~i~Gr~I~V 346 (858)
..++|||+|||.++|+++|+++|++||. |.+|++. +.++|||||+|.+.++|++|++.|+ +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9999875 3678999999999999999999996 58999999999
Q ss_pred EecCCCcc
Q 003007 347 EPSRPGGA 354 (858)
Q Consensus 347 ~~s~~~~~ 354 (858)
+++++...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99988654
No 253
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.2e-14 Score=122.36 Aligned_cols=76 Identities=21% Similarity=0.371 Sum_probs=69.1
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.|||..+.|+.|++.+.+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 3568999999999999999999999999999986 34568999999999999999999999999999999887765
Q ss_pred C
Q 003007 351 P 351 (858)
Q Consensus 351 ~ 351 (858)
.
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 254
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=124.09 Aligned_cols=80 Identities=14% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCCC------CHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEcCHHHHHHHHHHhcCCccccc-
Q 003007 188 GEHPSRTLFVRNINSNV------EDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 257 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~v------teeeLr~lFs~fG~I~sv~~---~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr- 257 (858)
.....++|||+|||..+ ++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+..|+|..|.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 78999999999999999985 467899999999999999999999999999999
Q ss_pred cccccccCCC
Q 003007 258 KLDIHFSIPK 267 (858)
Q Consensus 258 ~L~V~~a~pk 267 (858)
+|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999998653
No 255
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.6e-13 Score=119.47 Aligned_cols=79 Identities=19% Similarity=0.335 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...+.++|||+|| ++++++|+++|++||+|..|.+ .+++|||||+|.+.++|++|+..|++..|.|++|.|.|+.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i-~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEE-ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEe-cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3456799999996 9999999999999999999987 578999999999999999999999999999999999999876
Q ss_pred CC
Q 003007 268 DN 269 (858)
Q Consensus 268 ~~ 269 (858)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 256
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-13 Score=120.28 Aligned_cols=69 Identities=16% Similarity=0.248 Sum_probs=63.9
Q ss_pred cceeeeCCCCCC------chhHHHHhhcccCceEEEEeC---CCCccEEEEEEcCHHHHHHHHHHhCCCccCCc-eEEE
Q 003007 278 GTLVVFNLDPSV------SNEDLRQIFGAYGEVKEIRET---PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKL 346 (858)
Q Consensus 278 ~tLfV~NLp~~v------TeedL~~~Fs~fG~I~~irit---~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr-~I~V 346 (858)
++|||+|||..+ |+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 589999999999 789999999999999999874 46789999999999999999999999999999 8876
No 257
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=122.74 Aligned_cols=83 Identities=20% Similarity=0.436 Sum_probs=74.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE--eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~--~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
...+.++|||+|||.++++++|+++|+.|+.|..+. .+++++|||||+|.+.++|++|++.|++..|.|++|+|+|+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 345679999999999999999999999998877665 367789999999999999999999999999999999999998
Q ss_pred CCCCC
Q 003007 266 PKDNP 270 (858)
Q Consensus 266 pk~~~ 270 (858)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 86543
No 258
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=132.05 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=71.8
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEE--EEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCC----ccCCc
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS----DIAGK 342 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~--iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~----~i~Gr 342 (858)
....++|||+|||+++|+++|+++|++||.|.. |++ ++.++|||||+|.+. +|.+|++.|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345679999999999999999999999999966 765 567899999999999 999999999999 99999
Q ss_pred eEEEEecCCCc
Q 003007 343 RIKLEPSRPGG 353 (858)
Q Consensus 343 ~I~V~~s~~~~ 353 (858)
.|+|+++++..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998764
No 259
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=134.90 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=71.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccC--ceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG--~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...+|||+|||+++|+++|+++|++|| .|.+|++ ++.++|||||+|.+.++|++||+.|||..|.|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346899999999999999999999999 9999986 567899999999999999999999999999999999999
Q ss_pred cCCCc
Q 003007 349 SRPGG 353 (858)
Q Consensus 349 s~~~~ 353 (858)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 98754
No 260
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.6e-13 Score=127.51 Aligned_cols=78 Identities=17% Similarity=0.306 Sum_probs=71.5
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
..++|||+|||.++|+++|+++|++||.|..|++. +.++|||||+|.+.++|++||+. +|..|.|+.|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45789999999999999999999999999999873 45689999999999999999998 9999999999999998
Q ss_pred CCcc
Q 003007 351 PGGA 354 (858)
Q Consensus 351 ~~~~ 354 (858)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8754
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=5.3e-13 Score=123.44 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=71.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcc--------c
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPL--------R 255 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l--------~ 255 (858)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|+|..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999885 466899999999999999999999999999 5
Q ss_pred cccccccccCCC
Q 003007 256 RRKLDIHFSIPK 267 (858)
Q Consensus 256 gr~L~V~~a~pk 267 (858)
+++|.|.|+.|+
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 777888888754
No 262
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=1.7e-13 Score=123.19 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.....++|||+|||.++++++|+++|++||.|..++ .+++++|||||+|.+.++|++|++.|++..|.|++|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345568999999999999999999999999986432 256789999999999999999999999999999999999
Q ss_pred ccCCC
Q 003007 263 FSIPK 267 (858)
Q Consensus 263 ~a~pk 267 (858)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98643
No 263
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.42 E-value=4.6e-13 Score=130.96 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=74.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..|++..|.+++|.|+|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346799999999999999999999999999999986 467899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98654
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=3.5e-13 Score=124.13 Aligned_cols=76 Identities=25% Similarity=0.510 Sum_probs=71.1
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 190 HPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 190 ~~s~tLfV~NLP~~-vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
...++|||+|||.+ +++++|+++|++||+|..|++ ++|||||+|.+.++|++|++.|++..|.|++|.|+|+.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 45689999999999 999999999999999999987 78999999999999999999999999999999999997543
No 265
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=3.6e-13 Score=118.41 Aligned_cols=76 Identities=18% Similarity=0.390 Sum_probs=68.9
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
.+.+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++ +++..|.|++|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3457799999999999999999999999999999985 47789999999999999999996 58888999999998
Q ss_pred cc
Q 003007 263 FS 264 (858)
Q Consensus 263 ~a 264 (858)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 266
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.1e-13 Score=120.67 Aligned_cols=76 Identities=13% Similarity=0.302 Sum_probs=70.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||.++++++|+++|++| .|+++++. .++|||||+|.+.++|++|++.|||..+.|++|+|+++..+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 35689999999999999999999999 99999885 789999999999999999999999999999999999987653
No 267
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=9.8e-14 Score=122.81 Aligned_cols=75 Identities=21% Similarity=0.439 Sum_probs=67.3
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
++|||+|||.++++++|+++|++||.|.+|++. +.++|||||+|.+.+ |++|++.|||..+.|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999873 567899999999999 99999999999999999999999875
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 268
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=4.7e-13 Score=127.08 Aligned_cols=74 Identities=26% Similarity=0.280 Sum_probs=68.0
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccE-EEEEEcCHHHHHHHHHHhCCCccCC--ceEEEEecCCCc
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHH-KFIEFYDVRAAEAALKSLNRSDIAG--KRIKLEPSRPGG 353 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~-aFVeF~d~e~A~kAl~~LnG~~i~G--r~I~V~~s~~~~ 353 (858)
.|||+||++.+|+++|+++|++||.|++|++..+ .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 4789999999999999999999999999998654 486 9999999999999999999999988 699999999875
No 269
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.3e-13 Score=123.81 Aligned_cols=76 Identities=12% Similarity=0.306 Sum_probs=69.9
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
...++|||+|||.++|+++|+++|++||+|.+|++ .++++|||||+|.+.++|++|+. +++..+.|++|.|.|+.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45689999999999999999999999999999985 36789999999999999999999 89999999999999864
Q ss_pred C
Q 003007 266 P 266 (858)
Q Consensus 266 p 266 (858)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 3
No 270
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=133.92 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=71.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG--~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..++|||+|||+++++++|+++|++|| +|..|++ +++++|||||+|.+.++|++|+..|+|..|.|++|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999885 678999999999999999999999999999999999999
Q ss_pred cCCC
Q 003007 264 SIPK 267 (858)
Q Consensus 264 a~pk 267 (858)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 271
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.41 E-value=1.8e-13 Score=131.33 Aligned_cols=85 Identities=28% Similarity=0.479 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 186 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 186 ~~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
+....+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..|++..|.|++|.
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334456789999999999999999999999999999985 567899999999999999999999999999999999
Q ss_pred ccccCCCCCC
Q 003007 261 IHFSIPKDNP 270 (858)
Q Consensus 261 V~~a~pk~~~ 270 (858)
|+|+.++..+
T Consensus 121 V~~a~~~~~~ 130 (135)
T 2lea_A 121 VQMARYGRPP 130 (135)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876544
No 272
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.41 E-value=5.4e-13 Score=125.47 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=74.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|++.|++..+.|++|+|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456799999999999999999999999999999885 456899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003007 264 SIPKDN 269 (858)
Q Consensus 264 a~pk~~ 269 (858)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 977543
No 273
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=7.7e-13 Score=118.45 Aligned_cols=78 Identities=18% Similarity=0.177 Sum_probs=70.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEE-eC-CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-ET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~ir-it-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||.++|+++|+++|++||.|.+|+ +. ....+.|||+|.+.++|++|++.|||..+.|++|+|+++.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 457899999999999999999999999999995 53 3345669999999999999999999999999999999998874
No 274
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.41 E-value=1.5e-13 Score=122.69 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=67.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||.++++++|+++|++||.|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 345699999999999999999999999999865432 467899999999999999999999999999999999998
Q ss_pred cC
Q 003007 264 SI 265 (858)
Q Consensus 264 a~ 265 (858)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 275
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=8.9e-13 Score=119.68 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+. ++..|.|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 3456799999999999999999999999999999874 46789999999999999999999 4778999999999
Q ss_pred ccCCCCCC
Q 003007 263 FSIPKDNP 270 (858)
Q Consensus 263 ~a~pk~~~ 270 (858)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99886543
No 276
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=7.1e-13 Score=126.47 Aligned_cols=76 Identities=25% Similarity=0.427 Sum_probs=69.4
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
.....+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++.|||..+.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999873 45789999999999999999999999999999999998
Q ss_pred c
Q 003007 349 S 349 (858)
Q Consensus 349 s 349 (858)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 277
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=3.4e-13 Score=124.75 Aligned_cols=80 Identities=18% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHH---HHhhcCCCEEEEEeC--------CCcccEEEEEEcCHHHHHHHHHHhcCCccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRR 257 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr---~lFs~fG~I~sv~~~--------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr 257 (858)
....++|||+|||+++++++|+ ++|++||+|..|++. .+++|||||+|.+.++|++|++.|++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 999999999999852 24569999999999999999999999999999
Q ss_pred cccccccCCCC
Q 003007 258 KLDIHFSIPKD 268 (858)
Q Consensus 258 ~L~V~~a~pk~ 268 (858)
+|+|.|+.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998765
No 278
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=1.6e-13 Score=124.15 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=70.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEE----EeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i----rit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|||+|||.++|+++|+++|++||.|..+ +.++.++|||||+|.+.++|++|++ |||..+.|+.|+|+++++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 46799999999999999999999999987662 1246789999999999999999998 999999999999999988
Q ss_pred Cccc
Q 003007 352 GGAR 355 (858)
Q Consensus 352 ~~~r 355 (858)
+..+
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7644
No 279
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.7e-13 Score=118.25 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=69.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|||+|||.++|+++|+++|+.| .|.+|++ ++.++|||||+|.+.++|++|++ |||..+.|+.|+|.++.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 45789999999999999999999999 9999976 45568999999999999999999 999999999999999987
Q ss_pred Cc
Q 003007 352 GG 353 (858)
Q Consensus 352 ~~ 353 (858)
+.
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 280
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=5.4e-13 Score=118.41 Aligned_cols=78 Identities=9% Similarity=0.215 Sum_probs=71.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
....++|||+|||.++++++|+++|++| .|..|++ +++++|||||+|.+.++|++|+. |++..|.|++|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567999999999999999999999999 8888874 56789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 003007 265 IPKD 268 (858)
Q Consensus 265 ~pk~ 268 (858)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 281
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.40 E-value=7e-13 Score=126.72 Aligned_cols=77 Identities=23% Similarity=0.333 Sum_probs=71.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhcCCcccc--ccccccccCCCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 269 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~-aFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~pk~~ 269 (858)
-.|||+||++.+|+++|+++|++||+|.+|++..+.+|| |||+|.+.++|++|++.|+|..|.+ ++|+|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 567799999999999999999999999999876677888 9999999999999999999999988 8999999987654
No 282
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.40 E-value=4.8e-13 Score=123.52 Aligned_cols=81 Identities=16% Similarity=0.401 Sum_probs=70.1
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+..+ +..|.|++|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456799999999999999999999999999999985 3678999999999999999999976 589999999999
Q ss_pred ccCCCCC
Q 003007 263 FSIPKDN 269 (858)
Q Consensus 263 ~a~pk~~ 269 (858)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9987653
No 283
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.1e-12 Score=119.20 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=70.3
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||.++++++|+++|++||.|+.|++ ++.++|||||+|.+.++|++|++ ++..+.|+.|+|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 35678999999999999999999999999999986 35678999999999999999999 478999999999999
Q ss_pred CCCcc
Q 003007 350 RPGGA 354 (858)
Q Consensus 350 ~~~~~ 354 (858)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 88653
No 284
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.40 E-value=2.5e-13 Score=120.19 Aligned_cols=75 Identities=16% Similarity=0.374 Sum_probs=70.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
...++|||+|||+++++++|+++|++| +|..+++. +++|||||+|.+.++|++|++.|+|..+.|++|+|+|+..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 457899999999999999999999999 99998874 8899999999999999999999999999999999999854
No 285
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=7.9e-13 Score=126.16 Aligned_cols=77 Identities=26% Similarity=0.490 Sum_probs=70.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.|++..|.|++|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4456799999999999999999999999999999985 45689999999999999999999999999999999998
Q ss_pred cc
Q 003007 263 FS 264 (858)
Q Consensus 263 ~a 264 (858)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 286
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=1.3e-13 Score=121.97 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=67.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.+ |++|+..|+|..+.|++|.|++|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999885 3678999999999999 99999999999999999999999765
Q ss_pred CC
Q 003007 268 DN 269 (858)
Q Consensus 268 ~~ 269 (858)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 287
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.2e-13 Score=116.75 Aligned_cols=71 Identities=27% Similarity=0.417 Sum_probs=66.0
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
++|||+|||.++++++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++.++ ..+.|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999976 35568999999999999999999999 9999999999986
No 288
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.40 E-value=2.6e-13 Score=115.97 Aligned_cols=70 Identities=16% Similarity=0.401 Sum_probs=65.5
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
+|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++ |++..+.|++|.|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999874 56789999999999999999998 9999999999999885
No 289
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=8e-13 Score=117.72 Aligned_cols=75 Identities=25% Similarity=0.408 Sum_probs=63.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCc--cCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSD--IAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~--i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||+++|+++|+++|++||.|++|++...++|||||+|.+.++|++ |+|.. +.|++|.|+++.++.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 457999999999999999999999999999999987889999999999999983 56665 459999999998765
Q ss_pred c
Q 003007 354 A 354 (858)
Q Consensus 354 ~ 354 (858)
.
T Consensus 86 ~ 86 (89)
T 3d2w_A 86 N 86 (89)
T ss_dssp -
T ss_pred c
Confidence 4
No 290
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.39 E-value=6.9e-13 Score=123.60 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=66.1
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCce-----EEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR-----IKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~-----I~V~~s~~ 351 (858)
..+|||+|||.++|+++|+++|++||.|++|++... |||||+|.+.++|++||+.|||..|.|++ |+|+.+.+
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 468999999999999999999999999999998654 99999999999999999999999999998 66666655
Q ss_pred C
Q 003007 352 G 352 (858)
Q Consensus 352 ~ 352 (858)
.
T Consensus 94 ~ 94 (115)
T 3beg_B 94 R 94 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 291
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=119.59 Aligned_cols=79 Identities=11% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE-EEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-LYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~s-v~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
....++|||+|||+++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|+.. ++..|.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 345789999999999999999999999999987 654 678899999999999999999997 99999999999999
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.++.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86544
No 292
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-12 Score=116.77 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=71.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-e-CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-T-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 267 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-~-~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 267 (858)
...++|||+|||+++++++|+++|++||.|..|+ + ..+..|.|||+|.+.++|++|+..|+|..|.|++|.|.|+.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 4568999999999999999999999999999994 3 4445667999999999999999999999999999999999876
Q ss_pred C
Q 003007 268 D 268 (858)
Q Consensus 268 ~ 268 (858)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 3
No 293
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1e-12 Score=120.08 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=70.4
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEE-EEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~-iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||+++|+++|+++|++||.|.+ |++ +++++|||||+|.+.++|++||+. ++..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 34579999999999999999999999999987 765 567899999999999999999997 999999999999998
Q ss_pred CCCc
Q 003007 350 RPGG 353 (858)
Q Consensus 350 ~~~~ 353 (858)
.+..
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7653
No 294
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.5e-13 Score=123.76 Aligned_cols=78 Identities=17% Similarity=0.313 Sum_probs=70.0
Q ss_pred CCCCCcEEEE--eCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcc-----cccccc
Q 003007 188 GEHPSRTLFV--RNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL-----RRRKLD 260 (858)
Q Consensus 188 ~~~~s~tLfV--~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l-----~gr~L~ 260 (858)
...++++||| +||+.++++++|+++|++||+|..|.+. ..+|||||+|.+.++|++|++.|+|..+ .+++|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 3456899999 6699999999999999999999999763 4689999999999999999999999988 689999
Q ss_pred ccccCC
Q 003007 261 IHFSIP 266 (858)
Q Consensus 261 V~~a~p 266 (858)
|.|+..
T Consensus 100 v~~a~~ 105 (114)
T 2cq2_A 100 LNFVEK 105 (114)
T ss_dssp EEEESC
T ss_pred EEeccc
Confidence 999853
No 295
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.4e-13 Score=125.86 Aligned_cols=77 Identities=17% Similarity=0.381 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC-----CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~-----~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
...++|||+|||.++++++|+++|++||.|..|++. ++++|||||+|.+.++|++|+ .|++..|.|++|.|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 345899999999999999999999999999999863 678999999999999999999 89999999999999998
Q ss_pred CCC
Q 003007 265 IPK 267 (858)
Q Consensus 265 ~pk 267 (858)
.++
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 654
No 296
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.38 E-value=4.2e-13 Score=121.42 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=70.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+.++|||+|||.++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|++ |++..|.|++|.|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 34678999999999999999999999999775511 357789999999999999999999 9999999999999999
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 297
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=2.5e-13 Score=116.31 Aligned_cols=71 Identities=17% Similarity=0.430 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
++|||+|||.++++++|+++|++||+|..+++ +++++|||||+|.+.++|++|++.++ ..+.|++|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999988874 46789999999999999999999999 9999999999987
No 298
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.37 E-value=1.2e-12 Score=129.65 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=71.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeC-CCcccEEEEEEcCHHHHHHHHHHhcCCcccc--ccccccccCCC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-CKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPK 267 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~-~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~pk 267 (858)
...+|||+||++.+|+++|+++|++||+|.+|++. .+.+|||||+|.+.++|++|++.|+|..|.+ ++|+|+|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 34678999999999999999999999999999864 4468899999999999999999999999965 99999999887
Q ss_pred CC
Q 003007 268 DN 269 (858)
Q Consensus 268 ~~ 269 (858)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 299
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=117.93 Aligned_cols=72 Identities=26% Similarity=0.383 Sum_probs=65.1
Q ss_pred cceeeeCCCCCCchhH----HHHhhccc-CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSVSNED----LRQIFGAY-GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~vTeed----L~~~Fs~f-G~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
+.|||.|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|||..+.||+|+|.+++.+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 3499999999999988 55899999 599998 33 99999999999999999999999999999999999876
Q ss_pred cc
Q 003007 353 GA 354 (858)
Q Consensus 353 ~~ 354 (858)
..
T Consensus 85 sd 86 (96)
T 2diu_A 85 RE 86 (96)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 300
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.37 E-value=1.1e-12 Score=123.17 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
..++|||+|||.++++++|+++|++||+|..|++ +++++|||||+|.+.++|++|+ .|+|..|.|++|.|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999875 5678999999999999999999 799999999999999987
Q ss_pred CCC
Q 003007 266 PKD 268 (858)
Q Consensus 266 pk~ 268 (858)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 301
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.4e-13 Score=122.97 Aligned_cols=79 Identities=19% Similarity=0.441 Sum_probs=72.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+.. ++..|.|++|.|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999998874 367899999999999999999997 9999999999999998
Q ss_pred CCCCC
Q 003007 266 PKDNP 270 (858)
Q Consensus 266 pk~~~ 270 (858)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 87543
No 302
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.7e-12 Score=114.77 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 269 (858)
...++|||+|||.++++++|+++|++||+|..|........||||+|.+.++|++|+. |++..|.|++|.|.++.++..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 3568999999999999999999999999999985432222299999999999999999 999999999999999876553
No 303
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.36 E-value=1.1e-12 Score=129.83 Aligned_cols=83 Identities=19% Similarity=0.395 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 187 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....+.++|||+|||..+++++|+.+|++||.|..|.+ +++++|||||+|.+.++|++|+..|+|..|.|++|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999885 5567999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 003007 262 HFSIPKDN 269 (858)
Q Consensus 262 ~~a~pk~~ 269 (858)
.|+.++..
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99976543
No 304
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.6e-13 Score=123.38 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=68.6
Q ss_pred Cccceee--eCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCcc-----CCceEEEEe
Q 003007 276 NQGTLVV--FNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDI-----AGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV--~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i-----~Gr~I~V~~ 348 (858)
+..+||| +||+.++|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||+++ .|+.|.|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 4568999 66999999999999999999999998854 589999999999999999999999988 689999999
Q ss_pred cCCC
Q 003007 349 SRPG 352 (858)
Q Consensus 349 s~~~ 352 (858)
++.-
T Consensus 103 a~~~ 106 (114)
T 2cq2_A 103 VEKV 106 (114)
T ss_dssp ESCC
T ss_pred cccC
Confidence 8653
No 305
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=116.56 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=67.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
...+|||+|||.++|+++|+++|++||.|.+|........||||+|.+.++|++|++ |||..+.|+.|+|+++.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 346899999999999999999999999999984433222299999999999999999 99999999999999887654
No 306
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.36 E-value=1.3e-12 Score=116.28 Aligned_cols=76 Identities=22% Similarity=0.470 Sum_probs=63.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCc--cccccccccccCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKP--LRRRKLDIHFSIP 266 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~--l~gr~L~V~~a~p 266 (858)
..+.++|||+|||+++|+++|+++|++||+|.+|++...++|||||+|.+.++|++ +++.. +.+++|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 45679999999999999999999999999999999877799999999999999984 45555 4589999999987
Q ss_pred CC
Q 003007 267 KD 268 (858)
Q Consensus 267 k~ 268 (858)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 307
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.9e-12 Score=116.45 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=66.1
Q ss_pred CCcE-EEEeCCCCCCCHHH----HHHHhhcC-CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 191 PSRT-LFVRNINSNVEDSE----LRALFEQY-GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 191 ~s~t-LfV~NLP~~vteee----Lr~lFs~f-G~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
++.+ |||+|||.++++++ |+++|++| |+|..| ++ |+|||.|.+.++|++|++.|+|..+.||+|+|.||
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 4555 99999999999988 55899999 599987 33 99999999999999999999999999999999999
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
..+..
T Consensus 82 ~~~sd 86 (96)
T 2diu_A 82 PKNRE 86 (96)
T ss_dssp CCSCC
T ss_pred CCCcc
Confidence 87654
No 308
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.7e-13 Score=124.34 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=70.3
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCce-EEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I-~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
....+|||+|||+++|+++|+++|+.||.| ..|++ ++.++|||||+|.+.++|++||+. ||..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 345789999999999999999999999999 77776 356799999999999999999987 999999999999998
Q ss_pred CCCc
Q 003007 350 RPGG 353 (858)
Q Consensus 350 ~~~~ 353 (858)
.++.
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 309
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=125.73 Aligned_cols=80 Identities=28% Similarity=0.380 Sum_probs=71.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEE--------E--EeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------I--RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~--------i--rit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (858)
...+|||+|||+++|+++|+++|++||.|.. + ..++.++|||||+|.+.++|.+|+..|||..+.|+.|.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 123 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV 123 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4578999999999999999999999998865 3 23678899999999999999999999999999999999
Q ss_pred EEecCCCccc
Q 003007 346 LEPSRPGGAR 355 (858)
Q Consensus 346 V~~s~~~~~r 355 (858)
|.++++...+
T Consensus 124 V~~a~~~~~~ 133 (143)
T 3egn_A 124 VQFARSARPK 133 (143)
T ss_dssp EEECCCSCC-
T ss_pred EEECCCCCCc
Confidence 9999876543
No 310
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=2.6e-12 Score=121.98 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=67.7
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccE-EEEEEcCHHHHHHHHHHhcCCcccc--ccccccccCCCCC
Q 003007 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGF-VMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSIPKDN 269 (858)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~-aFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~pk~~ 269 (858)
.|||+||++.+++++|+++|++||+|.+|++..+ .|| |||+|.+.++|++|++.|+|..|.| ++|+|.|++++..
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 4679999999999999999999999999987544 496 9999999999999999999999987 6899999987653
No 311
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.35 E-value=1.5e-12 Score=125.43 Aligned_cols=81 Identities=19% Similarity=0.378 Sum_probs=72.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEE----------EeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL----------YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv----------~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~ 258 (858)
..++++|||+|||.++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|+..|+|..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3567999999999999999999999999987652 246889999999999999999999999999999999
Q ss_pred ccccccCCCCC
Q 003007 259 LDIHFSIPKDN 269 (858)
Q Consensus 259 L~V~~a~pk~~ 269 (858)
|.|+|+.+...
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 312
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=9.8e-13 Score=120.21 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=67.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|||+|||+++|+++|+++|++||. ++|++ +++++|||||+|.+.++|++||+ +|+..+.|+.|+|.++.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 4568999999999999999999999995 48766 45678999999999999999995 899999999999998876
Q ss_pred Cc
Q 003007 352 GG 353 (858)
Q Consensus 352 ~~ 353 (858)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 313
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.34 E-value=5.6e-13 Score=128.49 Aligned_cols=77 Identities=17% Similarity=0.146 Sum_probs=69.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCc---eEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~---I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...+|||+|||+++|+++|+++|++||. |.+|++ .++++|||||+|.+.++|++||+ |||..+.|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEE
Confidence 4568999999999999999999999999 777765 35678999999999999999999 999999999999999
Q ss_pred cCCCc
Q 003007 349 SRPGG 353 (858)
Q Consensus 349 s~~~~ 353 (858)
+.+..
T Consensus 122 a~~~e 126 (136)
T 2hgl_A 122 SHRTE 126 (136)
T ss_dssp CCHHH
T ss_pred CChHH
Confidence 86543
No 314
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.34 E-value=4.8e-13 Score=114.12 Aligned_cols=70 Identities=21% Similarity=0.452 Sum_probs=64.6
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeC-----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit-----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
+|||+|||.++|+++|+++|++||.|.+|++. +.++|||||+|.+.++|++|++. ++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 69999999999999999999999999999763 55789999999999999999995 899999999999875
No 315
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=7.2e-13 Score=123.11 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCE-EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDI-RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I-~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...+.++|||+|||+++++++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.|++|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34567999999999999999999999999999 66664 467899999999999999999997 9999999999999
Q ss_pred ccCCC
Q 003007 263 FSIPK 267 (858)
Q Consensus 263 ~a~pk 267 (858)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 316
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-13 Score=128.54 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=71.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEE--------EEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE--------IRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~--------iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (858)
...+|||+|||.++++++|+++|++||.|.. |++ ++.++|||||+|.+.++|++|++.|||..+.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 4578999999999999999999999999988 654 345789999999999999999999999999999
Q ss_pred eEEEEecCCCcc
Q 003007 343 RIKLEPSRPGGA 354 (858)
Q Consensus 343 ~I~V~~s~~~~~ 354 (858)
+|+|++++++..
T Consensus 86 ~l~V~~a~~~~~ 97 (116)
T 2lcw_A 86 PIKVSFATRRAD 97 (116)
Confidence 999999987653
No 317
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.9e-12 Score=118.22 Aligned_cols=79 Identities=9% Similarity=0.206 Sum_probs=69.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
.....++|||+|||+++++++|+++|++||.| .|++ +++++|||||+|.+.++|++|++ +++..|.++.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34566899999999999999999999999965 6663 57789999999999999999995 799999999999998
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.+..
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86544
No 318
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.32 E-value=1e-12 Score=137.38 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=71.4
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccC--ceEEEEe-----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG--~I~~iri-----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...+|||+||++++|+++|+++|++|| .|++|++ +++++|||||+|.+.++|++||+.|||+.|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 346899999999999999999999999 9999986 567899999999999999999999999999999999999
Q ss_pred cCCCc
Q 003007 349 SRPGG 353 (858)
Q Consensus 349 s~~~~ 353 (858)
+++..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 98654
No 319
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.32 E-value=6.1e-13 Score=128.71 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=68.8
Q ss_pred cEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCCCCCCCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEe
Q 003007 230 GFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE 309 (858)
Q Consensus 230 G~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri 309 (858)
|+||.+|.-++.+..++..+... ..+...--...... .........+|||+|||+++|+++|+++|++|| |++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~--~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i 77 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSE--FTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI 77 (139)
T ss_dssp ----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcc--cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE
Confidence 56777887777777666654322 22222211111110 111223456899999999999999999999999 778876
Q ss_pred C----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCc
Q 003007 310 T----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 353 (858)
Q Consensus 310 t----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~ 353 (858)
. ++++|||||+|.+.++|++|| .+|+..+.|+.|+|.++.+..
T Consensus 78 ~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 78 EIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 3 567899999999999999999 799999999999999987764
No 320
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=1.4e-12 Score=122.06 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=68.9
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCc---eEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~---I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
...+|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++||+ |||..|.|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4578999999999999999999999998 788876 35678999999999999999999 999999999999999
Q ss_pred cCCC
Q 003007 349 SRPG 352 (858)
Q Consensus 349 s~~~ 352 (858)
+.+.
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8644
No 321
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.1e-12 Score=115.85 Aligned_cols=78 Identities=24% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCCC
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 269 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 269 (858)
.++++|||+|||.++++++|+++|++||+|..|++...++|||||+|.+.++|++|+.. ...+.+++|.|.++.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 35799999999999999999999999999999998777899999999999999865331 3445899999999987654
No 322
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1e-12 Score=115.97 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=66.3
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
..++|||+|||.++|+++|+++|++||.|.+|++...++|||||+|.+.++|++|+.. ...+.|++|+|.++.++..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 3578999999999999999999999999999999877899999999999999764321 2345899999999987654
No 323
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.9e-13 Score=125.42 Aligned_cols=77 Identities=17% Similarity=0.200 Sum_probs=68.6
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEE-E----eCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-R----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i-r----it~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...+|||+|||+++|+++|+++|+.||.|..+ . .++.++|||||+|.+.++|++||+ |||..|.|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45799999999999999999999999998653 2 256679999999999999999999 99999999999999987
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
++.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 324
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.7e-13 Score=127.41 Aligned_cols=82 Identities=22% Similarity=0.370 Sum_probs=73.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRT--------LYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLR 255 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~s--------v~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~ 255 (858)
..+.++|||+|||.++++++|+++|++||.|.. |++ +++++|||||+|.+.++|++|++.|++..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356799999999999999999999999999987 553 4678999999999999999999999999999
Q ss_pred cccccccccCCCCCC
Q 003007 256 RRKLDIHFSIPKDNP 270 (858)
Q Consensus 256 gr~L~V~~a~pk~~~ 270 (858)
|++|.|.|+.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 325
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.31 E-value=2.8e-12 Score=120.90 Aligned_cols=76 Identities=20% Similarity=0.395 Sum_probs=70.2
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
...+|||+|| ++|+++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|||..+.|+.|+|++++++..
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 4578999996 69999999999999999999985 6789999999999999999999999999999999999988753
No 326
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=2.7e-12 Score=119.62 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=63.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
...++|||+|||.++++++|+++|++||+|..|.+... |||||+|.+.++|++|++.|++..|.|++|+|.|
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 45689999999999999999999999999999987543 9999999999999999999999999999944433
No 327
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=3.6e-12 Score=118.18 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=67.2
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
...+|||+|||+++|+++|+++|+.| .|.+|++. ++++|||||+|.+.++|++|| .|||..+.|+.|+|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 89999873 567899999999999999999 6999999999999988754
No 328
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=7.2e-13 Score=120.08 Aligned_cols=79 Identities=22% Similarity=0.482 Sum_probs=70.9
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
+...++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++|+. ++..+.|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 445689999999999999999999999999999885 46689999999999999999999 899999999999998
Q ss_pred CCCCC
Q 003007 265 IPKDN 269 (858)
Q Consensus 265 ~pk~~ 269 (858)
.++..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76543
No 329
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.31 E-value=9.4e-13 Score=120.93 Aligned_cols=78 Identities=15% Similarity=0.102 Sum_probs=70.0
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCc---eEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGE---VKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~---I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
....+|||+|||+++|+++|+++|+.||. |..|++. +.++|||||+|.+.++|++||+ |+|..+.|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 34578999999999999999999999998 8888763 5678999999999999999999 99999999999999
Q ss_pred ecCCCc
Q 003007 348 PSRPGG 353 (858)
Q Consensus 348 ~s~~~~ 353 (858)
++.+..
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 987543
No 330
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=6.9e-13 Score=124.96 Aligned_cols=77 Identities=9% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-----~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
....++|||+|||+++++++|+++|++||.|..+. .+++++|||||+|.+.++|++|+. |++..|.|++|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 34568999999999999999999999999985421 267789999999999999999999 999999999999999
Q ss_pred cCC
Q 003007 264 SIP 266 (858)
Q Consensus 264 a~p 266 (858)
+.+
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 864
No 331
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.31 E-value=9.6e-13 Score=112.25 Aligned_cols=70 Identities=19% Similarity=0.477 Sum_probs=64.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 194 TLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 194 tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
+|||+|||.++++++|+++|++||+|..+.+ +++++|||||+|.+.++|++|++. ++..+.|++|.|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999874 367899999999999999999994 899999999999875
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=4.2e-12 Score=111.25 Aligned_cols=71 Identities=21% Similarity=0.376 Sum_probs=65.7
Q ss_pred CccceeeeCCCCCCchhHHHHhhccc----C-------ceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAY----G-------EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~f----G-------~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (858)
...+|||+|||.++|+++|+++|++| | .|.++++.. .+|||||+|.+.++|++|+ .|||..+.|++|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 45789999999999999999999999 8 899999864 4899999999999999999 999999999999
Q ss_pred EEEe
Q 003007 345 KLEP 348 (858)
Q Consensus 345 ~V~~ 348 (858)
+|+.
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9873
No 333
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.30 E-value=4.5e-12 Score=129.00 Aligned_cols=113 Identities=13% Similarity=0.177 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHh--cCCccccccccccccCCCCCCCC-----CCCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeC
Q 003007 238 DIRAARTAMRAL--QNKPLRRRKLDIHFSIPKDNPSD-----KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 310 (858)
Q Consensus 238 d~e~A~~Al~~L--ng~~l~gr~L~V~~a~pk~~~~~-----~~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit 310 (858)
+.+.+..|++.. ....+.+....|.....+..+.. +....++|||+|||.++|+++|+++|++||.|.+|++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567788888866 44445555555554422222211 12345789999999999999999999999999999873
Q ss_pred ----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 311 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 311 ----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
+.++|||||+|.+.++|++|+..++ ..+.|+.|.|.+++.
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5678999999999999999998664 599999999998765
No 334
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=2e-12 Score=135.03 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=70.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCC--CEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYG--DIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG--~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..++|||+|||+++|+++|+++|++|| +|..|++ +++++|||||+|.+.++|++||+.|++..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 468999999999999999999999999 9999884 678999999999999999999999999999999999999
Q ss_pred cCC
Q 003007 264 SIP 266 (858)
Q Consensus 264 a~p 266 (858)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 335
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=1.7e-12 Score=121.58 Aligned_cols=76 Identities=7% Similarity=0.115 Sum_probs=68.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~---I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ +++..|.|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45689999999999999999999999998 766663 46789999999999999999999 99999999999999
Q ss_pred ccCC
Q 003007 263 FSIP 266 (858)
Q Consensus 263 ~a~p 266 (858)
++.+
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=5e-12 Score=126.99 Aligned_cols=78 Identities=21% Similarity=0.297 Sum_probs=72.2
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
..++|||+|||..+++++|+++|++||.|++|++. +.++|||||+|.+.++|++|++.|||..+.|+.|+|+++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 45799999999999999999999999999999874 55789999999999999999999999999999999999976
Q ss_pred Cc
Q 003007 352 GG 353 (858)
Q Consensus 352 ~~ 353 (858)
..
T Consensus 167 ~~ 168 (177)
T 2f3j_A 167 QI 168 (177)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 337
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=118.91 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=69.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~---I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....++|||+|||+++|+++|+++|+.||. |..|++ .++++|||||+|.+.++|++|+. +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 346789999999999999999999999988 777764 36789999999999999999999 9999999999999
Q ss_pred cccCC
Q 003007 262 HFSIP 266 (858)
Q Consensus 262 ~~a~p 266 (858)
.++.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99864
No 338
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=6.8e-12 Score=131.79 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=77.2
Q ss_pred CccccccccccccCCCCCCCCCCCCccceeeeCCCCCC---------chhHHHHhhcccCceEEEEeCCCCccEEEEEEc
Q 003007 252 KPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV---------SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 322 (858)
Q Consensus 252 ~~l~gr~L~V~~a~pk~~~~~~~~~~~tLfV~NLp~~v---------TeedL~~~Fs~fG~I~~irit~~srG~aFVeF~ 322 (858)
..+.|+.....+...............+|||+||+..+ ++++|+++|++||.|.+|++.. ++|||||+|.
T Consensus 109 ~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~ 187 (240)
T 3u1l_A 109 LDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFK 187 (240)
T ss_dssp BCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEES
T ss_pred cccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeC
Confidence 44446655555443222112223456799999999998 8999999999999999999864 6899999999
Q ss_pred CHHHHHHHHHHhCCCcc------------CCceEEEEecCCCcc
Q 003007 323 DVRAAEAALKSLNRSDI------------AGKRIKLEPSRPGGA 354 (858)
Q Consensus 323 d~e~A~kAl~~LnG~~i------------~Gr~I~V~~s~~~~~ 354 (858)
+.++|+.|+++|+|..| .|+.|.|+|++....
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 99999999999999999 899999999987643
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.29 E-value=4.9e-12 Score=110.83 Aligned_cols=72 Identities=18% Similarity=0.387 Sum_probs=66.5
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC----C-------CEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQY----G-------DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~f----G-------~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~ 258 (858)
.+.++|||+|||.++++++|+++|++| | .|.++++. +.+|||||+|.+.++|++|+ .|++..+.|++
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~ 81 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 81 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSSEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeE
Confidence 457999999999999999999999999 8 99999764 56999999999999999999 99999999999
Q ss_pred ccccc
Q 003007 259 LDIHF 263 (858)
Q Consensus 259 L~V~~ 263 (858)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99874
No 340
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=4.9e-12 Score=127.09 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=73.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
..+.++|||+|||.++++++|+++|++||+|..|.+ +++++|||||+|.+.++|++|++.|++..|.|++|.|+|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 356789999999999999999999999999999986 3678999999999999999999999999999999999998
Q ss_pred CCC
Q 003007 265 IPK 267 (858)
Q Consensus 265 ~pk 267 (858)
.+.
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 341
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.28 E-value=5.1e-12 Score=119.14 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCCCC
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 268 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 268 (858)
..+.++|||+|| ++++++|+++|++||+|..|.+ .+++|||||+|.+.++|++|+..|++..|.|++|.|.|+.++.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i-~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSM-DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 356799999996 7999999999999999999876 4789999999999999999999999999999999999998764
Q ss_pred C
Q 003007 269 N 269 (858)
Q Consensus 269 ~ 269 (858)
.
T Consensus 113 ~ 113 (121)
T 2bz2_A 113 M 113 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 342
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.28 E-value=1.8e-12 Score=117.48 Aligned_cols=77 Identities=25% Similarity=0.473 Sum_probs=69.9
Q ss_pred CCccceeeeCCCCCCchhHHHHhhcccCceEEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecC
Q 003007 275 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 350 (858)
Q Consensus 275 ~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~ 350 (858)
...++|||+|||.++|+++|+++|++||.|.+|++ ++.++|||||+|.+.++|++|++ +|..+.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34579999999999999999999999999999987 45578999999999999999999 9999999999999987
Q ss_pred CCc
Q 003007 351 PGG 353 (858)
Q Consensus 351 ~~~ 353 (858)
++.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 343
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.28 E-value=1.9e-12 Score=124.84 Aligned_cols=77 Identities=6% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCC---EEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGD---IRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~---I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
....++|||+|||+++|+++|+++|++||. |..|++ .++++|||||+|.+.++|++|++ |++..|.|++|+|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999998 666653 47789999999999999999999 9999999999999
Q ss_pred cccCC
Q 003007 262 HFSIP 266 (858)
Q Consensus 262 ~~a~p 266 (858)
.++.+
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98754
No 344
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=3.9e-12 Score=123.09 Aligned_cols=79 Identities=9% Similarity=0.193 Sum_probs=68.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 188 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 188 ~~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
.....++|||+|||+++|+++|+++|++|| |..|++ .++++|||||+|.+.++|++|+ .+++..|.++.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345668999999999999999999999999 557774 4678999999999999999999 7899999999999998
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.++.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 345
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.6e-12 Score=116.92 Aligned_cols=74 Identities=8% Similarity=0.170 Sum_probs=66.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
..++|||+|||+++++++|+++|+.| .|..|++ .++++|||||+|.+.++|++|+ .+++..|.|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 8888875 4678999999999999999999 5999999999999987743
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=115.27 Aligned_cols=78 Identities=14% Similarity=0.200 Sum_probs=66.2
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceEEEEeC--------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEE
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 347 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit--------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~ 347 (858)
..++|||+|||.++|+++|+++|++||.|. +++. +.++|||||+|.+.++|++||+.|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457899999999999999999999999999 6542 4679999999999999999999995 4888888887
Q ss_pred ecCCCcccc
Q 003007 348 PSRPGGARR 356 (858)
Q Consensus 348 ~s~~~~~r~ 356 (858)
.+.+...+.
T Consensus 84 ~~~~~~~~~ 92 (114)
T 2dnl_A 84 SSPTIKDKP 92 (114)
T ss_dssp CCSSSCSEE
T ss_pred cCCCcCCCe
Confidence 766554443
No 347
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.23 E-value=1.1e-11 Score=130.32 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=71.1
Q ss_pred CCCCcEEEEeCCCCCC---------CHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcc-----
Q 003007 189 EHPSRTLFVRNINSNV---------EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL----- 254 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~v---------teeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l----- 254 (858)
....++|||+||+..+ ++++|+++|++||+|.+|++. .++|||||+|.+.++|+.|+++|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 4568999999999998 799999999999999999864 5799999999999999999999999999
Q ss_pred -------ccccccccccCCCCCCC
Q 003007 255 -------RRRKLDIHFSIPKDNPS 271 (858)
Q Consensus 255 -------~gr~L~V~~a~pk~~~~ 271 (858)
.|+.|.|.||....++.
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~pnp~ 233 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDPDPA 233 (240)
T ss_dssp TTGGGGGGSCCCEEEECC------
T ss_pred ccccccCCCCEEEEEEccCCCCHH
Confidence 89999999998765543
No 348
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.22 E-value=1.3e-11 Score=117.45 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=67.0
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEE--EEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIR--TLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~--sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
....++|||+|||+++|+++|+++|++| .|. .|++ .++++|||||+|.+.++|++|++. ++..|.|+.|+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3456899999999999999999999999 666 7764 467899999999999999999985 7799999999998
Q ss_pred ccCC
Q 003007 263 FSIP 266 (858)
Q Consensus 263 ~a~p 266 (858)
++.+
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=2.8e-11 Score=111.41 Aligned_cols=76 Identities=18% Similarity=0.165 Sum_probs=66.7
Q ss_pred CccceeeeCCCC-----CCchhHHHHhhcccCceEEEEeC------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003007 276 NQGTLVVFNLDP-----SVSNEDLRQIFGAYGEVKEIRET------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (858)
Q Consensus 276 ~~~tLfV~NLp~-----~vTeedL~~~Fs~fG~I~~irit------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (858)
...+|+|.||.. +-++++|+++|++||.|.+|++. ++++|+|||+|.+.++|++|++.|||+.+.|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 456899999962 23789999999999999999873 3578999999999999999999999999999999
Q ss_pred EEEecCC
Q 003007 345 KLEPSRP 351 (858)
Q Consensus 345 ~V~~s~~ 351 (858)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999875
No 350
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.4e-12 Score=120.91 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=66.4
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCce----EEEEe----CCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEV----KEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I----~~iri----t~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
..+|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++||+. |+..+.|+.|+|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 4689999999999999999999999975 46654 466789999999999999999996 99999999999988
Q ss_pred cCCC
Q 003007 349 SRPG 352 (858)
Q Consensus 349 s~~~ 352 (858)
+.+.
T Consensus 102 a~~~ 105 (123)
T 2dha_A 102 STAA 105 (123)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 7544
No 351
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=4.8e-11 Score=110.50 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=68.7
Q ss_pred CCccceeeeCCCCCC-----------chhHHHHhhcccCceEEEEeC-CCCccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003007 275 LNQGTLVVFNLDPSV-----------SNEDLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (858)
Q Consensus 275 ~~~~tLfV~NLp~~v-----------TeedL~~~Fs~fG~I~~irit-~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (858)
....+|+|.||.... ++++|+++|++||.|++|.+. ..++|||||+|.+.++|++|++.|||..+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 346789999994433 268999999999999999763 45789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003007 343 RIKLEPSRPGG 353 (858)
Q Consensus 343 ~I~V~~s~~~~ 353 (858)
+|+|.++.+..
T Consensus 93 ~l~v~~a~~~~ 103 (112)
T 2dit_A 93 QITAQAWDGTT 103 (112)
T ss_dssp ECEEEECCSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998754
No 352
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.20 E-value=1.1e-11 Score=118.08 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=66.2
Q ss_pred CccceeeeCCCCCCchhHHHHhhcccCceE--EEEeC----CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEec
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVK--EIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 349 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~--~irit----~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s 349 (858)
...+|||+|||+++|+++|+++|++| .|+ +|++. ++++|||||+|.+.++|++||+. ++..|.|+.|+|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 45789999999999999999999999 566 78763 56789999999999999999985 789999999999887
Q ss_pred CCC
Q 003007 350 RPG 352 (858)
Q Consensus 350 ~~~ 352 (858)
.++
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 353
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.5e-12 Score=119.02 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCE----EEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDI----RTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I----~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
...++|||+|||+++|+++|+++|++||.| ..|++ +++++|||||+|.+.++|++|++. ++..|.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456899999999999999999999999975 34442 578899999999999999999996 999999999999
Q ss_pred cccC
Q 003007 262 HFSI 265 (858)
Q Consensus 262 ~~a~ 265 (858)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=6.1e-11 Score=109.77 Aligned_cols=83 Identities=17% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEeCCCCCCC-----------HHHHHHHhhcCCCEEEEEe-CCCcccEEEEEEcCHHHHHHHHHHhcCCcc
Q 003007 187 YGEHPSRTLFVRNINSNVE-----------DSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPL 254 (858)
Q Consensus 187 ~~~~~s~tLfV~NLP~~vt-----------eeeLr~lFs~fG~I~sv~~-~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l 254 (858)
....++++|+|+||....+ +++|+++|++||+|..|.+ ...++|||||+|.+.++|++|+..|+|..|
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3456789999999954433 5899999999999999875 345799999999999999999999999999
Q ss_pred ccccccccccCCCCC
Q 003007 255 RRRKLDIHFSIPKDN 269 (858)
Q Consensus 255 ~gr~L~V~~a~pk~~ 269 (858)
.|++|.|.|+.++..
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999987543
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.8e-11 Score=112.33 Aligned_cols=72 Identities=15% Similarity=0.296 Sum_probs=60.7
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----C---CCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----A---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~---~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
...++|||+|||+++++++|+++|++||+|. +.+ + ++++|||||+|.+.++|++|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4579999999999999999999999999999 553 2 5789999999999999999999884 256666655
Q ss_pred ccc
Q 003007 262 HFS 264 (858)
Q Consensus 262 ~~a 264 (858)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 356
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.18 E-value=2.8e-11 Score=137.90 Aligned_cols=80 Identities=28% Similarity=0.469 Sum_probs=73.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccc
Q 003007 189 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 263 (858)
Q Consensus 189 ~~~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 263 (858)
..+.++|||+|||..+|+++|+.+|++||.|..|.+ +++++|||||+|.+.++|++||..|+|..|.|++|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999875 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003007 264 SIPKD 268 (858)
Q Consensus 264 a~pk~ 268 (858)
+.++.
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 97643
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.15 E-value=7.8e-11 Score=108.41 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=67.8
Q ss_pred CCCcEEEEeCCCC-----CCCHHHHHHHhhcCCCEEEEEeC------CCcccEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003007 190 HPSRTLFVRNINS-----NVEDSELRALFEQYGDIRTLYTA------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (858)
Q Consensus 190 ~~s~tLfV~NLP~-----~vteeeLr~lFs~fG~I~sv~~~------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~ 258 (858)
.++++|+|+|+.. +-++++|+++|++||+|.+|++. ++++|||||+|.+.++|++|++.|+|..+.||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4689999999963 23789999999999999999852 467999999999999999999999999999999
Q ss_pred ccccccCC
Q 003007 259 LDIHFSIP 266 (858)
Q Consensus 259 L~V~~a~p 266 (858)
|.|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.15 E-value=2.5e-11 Score=115.07 Aligned_cols=77 Identities=16% Similarity=0.292 Sum_probs=68.3
Q ss_pred cceeeeCC----CCCCchhHHHHhhcccCceEEEEe-----CCCCccEEEEEEcC----HHH----HHHHHH--HhCCCc
Q 003007 278 GTLVVFNL----DPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYD----VRA----AEAALK--SLNRSD 338 (858)
Q Consensus 278 ~tLfV~NL----p~~vTeedL~~~Fs~fG~I~~iri-----t~~srG~aFVeF~d----~e~----A~kAl~--~LnG~~ 338 (858)
.+|||+|| |+.+++++|+++|+.||+|.+|++ ++.++|||||+|.| +++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 47999999 999999999999999999999975 77889999999996 333 899999 899999
Q ss_pred cCCceEEEEecCCCcc
Q 003007 339 IAGKRIKLEPSRPGGA 354 (858)
Q Consensus 339 i~Gr~I~V~~s~~~~~ 354 (858)
|+|++|+|.+.+.+..
T Consensus 83 I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 83 IMGFKFEVILNKHSIL 98 (136)
T ss_dssp ETTEEEEEEECCTTHH
T ss_pred ecCcEEEEEECcccHH
Confidence 9999999999887765
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.3e-10 Score=106.04 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCCcc
Q 003007 286 DPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 354 (858)
Q Consensus 286 p~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~~~ 354 (858)
+..+|+++|+++|++||.|.+|++.+.++|||||+|.+.++|++|++.++ .+.|+.|+|+|++++..
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 36799999999999999999999988899999999999999999999855 46799999999987653
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.08 E-value=1.6e-10 Score=117.54 Aligned_cols=75 Identities=12% Similarity=0.318 Sum_probs=67.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~----~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
..++|||+|||.++++++|+++|++||+|..|++ .++++|||||+|.+.++|++|+..+ +..+.|++|.|.|+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 3589999999999999999999999999999875 3678999999999999999999865 5689999999998754
No 361
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.9e-10 Score=101.31 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=63.8
Q ss_pred CcEEEEeCCC-------CCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccccc
Q 003007 192 SRTLFVRNIN-------SNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 264 (858)
Q Consensus 192 s~tLfV~NLP-------~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 264 (858)
.++|.|.-.. .++++++|+++|++||+|..|++.++++|||||+|.+.++|++|++.+++ +.+++|.|.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a 87 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWL 87 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECS
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEc
Confidence 3455555443 46899999999999999999998888999999999999999999997544 67999999999
Q ss_pred CCCC
Q 003007 265 IPKD 268 (858)
Q Consensus 265 ~pk~ 268 (858)
.++.
T Consensus 88 ~~~~ 91 (100)
T 2d9o_A 88 EGQP 91 (100)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7654
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.08 E-value=2.6e-10 Score=104.90 Aligned_cols=77 Identities=23% Similarity=0.327 Sum_probs=65.6
Q ss_pred CccceeeeCC--CCCCc--------hhHHHHhhcccCceEEEEeCC-------CCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 276 NQGTLVVFNL--DPSVS--------NEDLRQIFGAYGEVKEIRETP-------HKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 276 ~~~tLfV~NL--p~~vT--------eedL~~~Fs~fG~I~~irit~-------~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
+.+.|+|.|+ +.++. +++|++.|++||.|.+|++.. .++|++||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3567899998 33333 479999999999999998742 468999999999999999999999999
Q ss_pred cCCceEEEEecCCC
Q 003007 339 IAGKRIKLEPSRPG 352 (858)
Q Consensus 339 i~Gr~I~V~~s~~~ 352 (858)
++|++|+|.+....
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999997653
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.06 E-value=7.6e-11 Score=111.82 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=64.5
Q ss_pred cEEEEeCC----CCCCCHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEcC----HHH----HHHHHH--HhcCCc
Q 003007 193 RTLFVRNI----NSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYD----IRA----ARTAMR--ALQNKP 253 (858)
Q Consensus 193 ~tLfV~NL----P~~vteeeLr~lFs~fG~I~sv~~-----~~ksrG~aFV~F~d----~e~----A~~Al~--~Lng~~ 253 (858)
++|||+|| |+.+++++|+++|+.||+|.+|.+ +++++|||||+|.| +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999883 78999999999996 433 889988 789999
Q ss_pred ccccccccccc
Q 003007 254 LRRRKLDIHFS 264 (858)
Q Consensus 254 l~gr~L~V~~a 264 (858)
|.|++|+|.+-
T Consensus 83 I~Gr~irV~ln 93 (136)
T 2j8a_A 83 IMGFKFEVILN 93 (136)
T ss_dssp ETTEEEEEEEC
T ss_pred ecCcEEEEEEC
Confidence 99999999975
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.02 E-value=4.3e-10 Score=103.40 Aligned_cols=76 Identities=16% Similarity=0.347 Sum_probs=66.4
Q ss_pred CCCcEEEEeCC--CCCCC--------HHHHHHHhhcCCCEEEEEeC-------CCcccEEEEEEcCHHHHHHHHHHhcCC
Q 003007 190 HPSRTLFVRNI--NSNVE--------DSELRALFEQYGDIRTLYTA-------CKHRGFVMISYYDIRAARTAMRALQNK 252 (858)
Q Consensus 190 ~~s~tLfV~NL--P~~vt--------eeeLr~lFs~fG~I~sv~~~-------~ksrG~aFV~F~d~e~A~~Al~~Lng~ 252 (858)
.+++.|.++|+ |.++. +++|++.|++||+|.+|++. ++++|+|||+|.+.++|++|++.|+|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 44443 36899999999999999852 246899999999999999999999999
Q ss_pred ccccccccccccC
Q 003007 253 PLRRRKLDIHFSI 265 (858)
Q Consensus 253 ~l~gr~L~V~~a~ 265 (858)
.+.||+|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999874
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.02 E-value=1.2e-10 Score=106.88 Aligned_cols=68 Identities=28% Similarity=0.401 Sum_probs=58.6
Q ss_pred eeCCCCCCchhHHHHhh------------cccCceEEEEeCC----CCccEEEEEEcCHHHHHHHHHHhCCCccCCceEE
Q 003007 282 VFNLDPSVSNEDLRQIF------------GAYGEVKEIRETP----HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 345 (858)
Q Consensus 282 V~NLp~~vTeedL~~~F------------s~fG~I~~irit~----~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~ 345 (858)
+.||+..+++++|+++| ++||.|.+|++.. +++|||||+|.+.++|++|++.|||+.++|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666777777776666 9999999998853 4689999999999999999999999999999999
Q ss_pred EEec
Q 003007 346 LEPS 349 (858)
Q Consensus 346 V~~s 349 (858)
|+|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=6e-10 Score=122.87 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=65.1
Q ss_pred CccceeeeC--CCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccC---Cc--eEEEEe
Q 003007 276 NQGTLVVFN--LDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA---GK--RIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~N--Lp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~---Gr--~I~V~~ 348 (858)
+..+|||+| |+..+|+++|+++|++||+|++|++.. +||||||+|.+.++|++|+++|||+++. |+ .|.|.|
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 456899999 578999999999999999999998854 7899999999999999999999999873 44 577777
Q ss_pred cC
Q 003007 349 SR 350 (858)
Q Consensus 349 s~ 350 (858)
..
T Consensus 96 ~~ 97 (345)
T 3tht_A 96 VE 97 (345)
T ss_dssp CS
T ss_pred ee
Confidence 74
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.99 E-value=6.1e-10 Score=122.84 Aligned_cols=75 Identities=19% Similarity=0.342 Sum_probs=65.5
Q ss_pred CCCCcEEEEeC--CCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccc---cc--cccc
Q 003007 189 EHPSRTLFVRN--INSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR---RR--KLDI 261 (858)
Q Consensus 189 ~~~s~tLfV~N--LP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~---gr--~L~V 261 (858)
..++++|||+| |+..+|+++|+++|++||+|.+|++ ..+||||||+|.+.++|++|+++|||+.+. |+ +|+|
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~-~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM-PPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEEC-CTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEE-eCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 46789999999 5789999999999999999999875 348999999999999999999999999873 33 5666
Q ss_pred ccc
Q 003007 262 HFS 264 (858)
Q Consensus 262 ~~a 264 (858)
.|+
T Consensus 94 ~~~ 96 (345)
T 3tht_A 94 NFV 96 (345)
T ss_dssp EEC
T ss_pred EEe
Confidence 665
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.95 E-value=1e-09 Score=103.11 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=63.9
Q ss_pred ccceeeeCCCC--C---CchhHHHHhhcccCceEEEEeC---------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCc
Q 003007 277 QGTLVVFNLDP--S---VSNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 342 (858)
Q Consensus 277 ~~tLfV~NLp~--~---vTeedL~~~Fs~fG~I~~irit---------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr 342 (858)
.++|+|.|+-. + -.++||++.|++||.|.+|++. +.++|++||+|.+.++|.+|++.|||+.++|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999832 2 2468999999999999999763 23469999999999999999999999999999
Q ss_pred eEEEEecCC
Q 003007 343 RIKLEPSRP 351 (858)
Q Consensus 343 ~I~V~~s~~ 351 (858)
.|.|.+...
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999999764
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.94 E-value=1.6e-09 Score=101.22 Aligned_cols=76 Identities=18% Similarity=0.146 Sum_probs=64.1
Q ss_pred CccceeeeCCCC--CC--------chhHHHHhhcccCceEEEEeCCC-CccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003007 276 NQGTLVVFNLDP--SV--------SNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (858)
Q Consensus 276 ~~~tLfV~NLp~--~v--------TeedL~~~Fs~fG~I~~irit~~-srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (858)
+.+.|.|.|+=. +. .++||++.|++||.|.+|.+... .+|++||+|.+.++|++|++.|||+.++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345788888732 21 24689999999999999998543 48999999999999999999999999999999
Q ss_pred EEEecCC
Q 003007 345 KLEPSRP 351 (858)
Q Consensus 345 ~V~~s~~ 351 (858)
.|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999754
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.94 E-value=3.1e-10 Score=104.10 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=60.0
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCCEEEEEeC----CCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 197 VRNINSNVEDSELRALF------------EQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 197 V~NLP~~vteeeLr~lF------------s~fG~I~sv~~~----~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
+.+|+..+++++|++.| ++||+|.+|++. ++++|||||+|.+.++|++|++.|+|..+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56777888888877766 999999999863 45799999999999999999999999999999999
Q ss_pred cccc
Q 003007 261 IHFS 264 (858)
Q Consensus 261 V~~a 264 (858)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.84 E-value=4.2e-09 Score=98.97 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=65.0
Q ss_pred CCcEEEEeCCCC--C---CCHHHHHHHhhcCCCEEEEEeC---------CCcccEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 191 PSRTLFVRNINS--N---VEDSELRALFEQYGDIRTLYTA---------CKHRGFVMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 191 ~s~tLfV~NLP~--~---vteeeLr~lFs~fG~I~sv~~~---------~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
++++|+++|+-. + -.+++|++.|++||+|.+|++. ++++|+|||+|.+.++|++|++.|+|..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999842 2 2368999999999999998741 2457999999999999999999999999999
Q ss_pred ccccccccC
Q 003007 257 RKLDIHFSI 265 (858)
Q Consensus 257 r~L~V~~a~ 265 (858)
|+|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.79 E-value=9.3e-09 Score=96.02 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCCcEEEEeCCCCCCC----------HHHHHHHhhcCCCEEEEEeCC-CcccEEEEEEcCHHHHHHHHHHhcCCcccccc
Q 003007 190 HPSRTLFVRNINSNVE----------DSELRALFEQYGDIRTLYTAC-KHRGFVMISYYDIRAARTAMRALQNKPLRRRK 258 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vt----------eeeLr~lFs~fG~I~sv~~~~-ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~ 258 (858)
.++++|.++|+=..-. +++|++.|++||.|.+|++.. ..+|+|||+|.+.++|++|++.|+|..+.||.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4678899998743322 257899999999999998643 35899999999999999999999999999999
Q ss_pred ccccccC
Q 003007 259 LDIHFSI 265 (858)
Q Consensus 259 L~V~~a~ 265 (858)
|.|.|+.
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9999974
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=2.3e-08 Score=89.18 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=63.3
Q ss_pred CCccceeeeCCC----CCCch----hHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEE
Q 003007 275 LNQGTLVVFNLD----PSVSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 346 (858)
Q Consensus 275 ~~~~tLfV~NLp----~~vTe----edL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V 346 (858)
.+++||+|.-.+ ..+-+ .+|.+.|++||+|+.+|+.. +.+||+|.+.++|.+||. |||..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 456789998876 23334 67999999999999999965 349999999999999998 9999999999999
Q ss_pred EecCCC
Q 003007 347 EPSRPG 352 (858)
Q Consensus 347 ~~s~~~ 352 (858)
.++.+.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998765
No 374
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.60 E-value=1e-07 Score=85.33 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=71.9
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEEE-eeeccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003007 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLY-LPIDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 771 (858)
Q Consensus 695 TTvMirNIPnk~~~~~L~~~id~~~~~~yDf~Y-lp~df~~~-~n~gyaFin~~~~~~~~~f~~~f~g~~w~~~~-s~k~ 771 (858)
|.|.||++|..+|++.++++|+... ++||+| .|-+...+ +--+.|||||.+++++..|.+.|+|+.|..-+ .+-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~--~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~ 79 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMP--EHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYP 79 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCC--CEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcc--cceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEee
Confidence 7899999999999999999999764 688885 57776654 44578999999999999999999999999754 4577
Q ss_pred EEEEeeecc
Q 003007 772 ASLAYARIQ 780 (858)
Q Consensus 772 ~~v~~A~iQ 780 (858)
+.|.||--|
T Consensus 80 a~VE~AP~q 88 (91)
T 1uw4_A 80 AIVEFAPFQ 88 (91)
T ss_dssp CEEEECSSC
T ss_pred eEEEEcCCC
Confidence 899999877
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1.6e-07 Score=88.45 Aligned_cols=76 Identities=21% Similarity=0.160 Sum_probs=66.6
Q ss_pred CccceeeeCCCCC-CchhHHHHhhcccCceEEEEeCCCCccEEEEEEcC-HHHHHHHHHHhC--CCccCCceEEEEecCC
Q 003007 276 NQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD-VRAAEAALKSLN--RSDIAGKRIKLEPSRP 351 (858)
Q Consensus 276 ~~~tLfV~NLp~~-vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d-~e~A~kAl~~Ln--G~~i~Gr~I~V~~s~~ 351 (858)
....|+|+||+.+ ++.++|+++|++||+|..|.+.... ..|||+|.+ .++|++|+++|| |..|.|..++++...-
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4567999999999 9999999999999999999986544 379999999 899999999996 7799999999887653
Q ss_pred C
Q 003007 352 G 352 (858)
Q Consensus 352 ~ 352 (858)
.
T Consensus 96 e 96 (121)
T 1owx_A 96 E 96 (121)
T ss_dssp H
T ss_pred H
Confidence 3
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=8.2e-08 Score=86.03 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=62.5
Q ss_pred CCCccceeeeCCCCC-----Cch----hHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceE
Q 003007 274 DLNQGTLVVFNLDPS-----VSN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 344 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~-----vTe----edL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I 344 (858)
..+++||+|.-++.+ +-+ .+|.+.|..||+|+.+|+.... +||+|.+.++|.+||+ |||.++.||.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 346789999988643 322 5699999999999999986443 9999999999999998 99999999999
Q ss_pred EEEecCC
Q 003007 345 KLEPSRP 351 (858)
Q Consensus 345 ~V~~s~~ 351 (858)
+|++..+
T Consensus 88 ~V~~k~~ 94 (95)
T 1ufw_A 88 KISGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEeccCC
Confidence 9998654
No 377
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=98.40 E-value=1.1e-07 Score=85.68 Aligned_cols=84 Identities=21% Similarity=0.343 Sum_probs=70.1
Q ss_pred eeEEeecCCCCCCHHHHHHHHHhhCCCcceEE-Eeeecccccce-eEEEEEecCCcccHHHHHHHhcCCcccCCC-CccE
Q 003007 695 TTLMIKNIPNKYTSKMLLAAIDENHKGTYDFL-YLPIDFKNKCN-VGYAFINMLSPLHIIPFYEAFNGKKWEKFN-SEKV 771 (858)
Q Consensus 695 TTvMirNIPnk~~~~~L~~~id~~~~~~yDf~-Ylp~df~~~~n-~gyaFin~~~~~~~~~f~~~f~g~~w~~~~-s~k~ 771 (858)
-.|.||++|+.+|++.+++.|+.... .||+ |.|-|...+-+ -..|||||++++++..|.+.|+|+.|..-+ .+-.
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~--~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPA--HDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSS--EEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCc--cceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 46999999999999999999997554 4666 57777766433 367999999999999999999999999753 4578
Q ss_pred EEEEeeecc
Q 003007 772 ASLAYARIQ 780 (858)
Q Consensus 772 ~~v~~A~iQ 780 (858)
+.|.||-.|
T Consensus 88 a~VE~APyq 96 (97)
T 2l08_A 88 AVVEFAPFQ 96 (97)
T ss_dssp EEEEECCCC
T ss_pred eEEEecCCC
Confidence 889999877
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=1.2e-06 Score=82.45 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcC-HHHHHHHHHHhc--CCccccccccccc
Q 003007 190 HPSRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYD-IRAARTAMRALQ--NKPLRRRKLDIHF 263 (858)
Q Consensus 190 ~~s~tLfV~NLP~~-vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d-~e~A~~Al~~Ln--g~~l~gr~L~V~~ 263 (858)
.+.+.|||+||+.+ +++++|+++|++||+|..|.+. ...-.|||.|.+ .++|.+|+++|+ +..|.+..+.++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 45689999999999 9999999999999999999853 234479999999 899999999994 6777787666654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.32 E-value=7.2e-07 Score=91.79 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=57.0
Q ss_pred CchhHHHHhhcccCceEEEEeC---------CCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 289 VSNEDLRQIFGAYGEVKEIRET---------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 289 vTeedL~~~Fs~fG~I~~irit---------~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
-.+++|++.|++||.|.++.+. +.++|++||+|.+.++|++|++.|||+.+.||.|.+.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 4678999999999999999872 26789999999999999999999999999999999999753
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=1.2e-06 Score=78.00 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=61.1
Q ss_pred CCCcEEEEeCCC----CCCCH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccc
Q 003007 190 HPSRTLFVRNIN----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 261 (858)
Q Consensus 190 ~~s~tLfV~NLP----~~vte----eeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 261 (858)
.+..||+|.-.+ .++-+ .+|.+.|.+||+|..+++.. +.+||+|.+.++|.+|+. |+|..+.||.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~---d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE---DKMWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS---SSEEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec---CCEEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 356788888776 23434 67889999999999998643 338999999999999998 9999999999999
Q ss_pred cccCC
Q 003007 262 HFSIP 266 (858)
Q Consensus 262 ~~a~p 266 (858)
+++.|
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99865
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.07 E-value=4.4e-06 Score=85.83 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=56.5
Q ss_pred CCCHHHHHHHhhcCCCEEEEEe---------CCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 203 NVEDSELRALFEQYGDIRTLYT---------ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 203 ~vteeeLr~lFs~fG~I~sv~~---------~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
+-.+++|++.|++||+|.++++ +++++|++||+|.+.++|++|+..|+|..+.||+|.+.|..
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3456899999999999999985 22788999999999999999999999999999999999874
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=7.9e-06 Score=74.82 Aligned_cols=72 Identities=24% Similarity=0.252 Sum_probs=65.8
Q ss_pred CccceeeeCCCCCCchhHHHHhhccc-----CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEe
Q 003007 276 NQGTLVVFNLDPSVSNEDLRQIFGAY-----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 348 (858)
Q Consensus 276 ~~~tLfV~NLp~~vTeedL~~~Fs~f-----G~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~ 348 (858)
..++|-+-|||.++++..|+.+.++| |.|+.|.+.+...| |+|+|.|...|.+|.-+|+|.+|.|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 35689999999999999999999999 99999988776544 99999999999999999999999999999754
No 383
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=9.6e-06 Score=72.72 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=59.1
Q ss_pred CCCcEEEEeCCCCC-----CCH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccc
Q 003007 190 HPSRTLFVRNINSN-----VED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 260 (858)
Q Consensus 190 ~~s~tLfV~NLP~~-----vte----eeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 260 (858)
.+..||+|.-++.. +-+ .+|.+.|.+||+|..+++.... +||+|.+.++|.+|+. |+|..+.||.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 46789999988743 322 5688999999999988853322 9999999999999998 999999999999
Q ss_pred cccc
Q 003007 261 IHFS 264 (858)
Q Consensus 261 V~~a 264 (858)
|++-
T Consensus 89 V~~k 92 (95)
T 1ufw_A 89 ISGP 92 (95)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9874
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=6.2e-05 Score=68.97 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=65.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhhcC-----CCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccccccccc
Q 003007 190 HPSRTLFVRNINSNVEDSELRALFEQY-----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 262 (858)
Q Consensus 190 ~~s~tLfV~NLP~~vteeeLr~lFs~f-----G~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 262 (858)
...++|-+-|||..++++.|+.+.+.+ |+|..+.+.+.+.| |+|+|.|...|-+|.-+|+|..|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 346899999999999999999999999 99999987665555 9999999999999999999999999999875
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.48 E-value=0.00061 Score=61.88 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=72.1
Q ss_pred ccceeeeCCCCCCchhHHHHhhcc-c----CceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCC
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGA-Y----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 351 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~-f----G~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~ 351 (858)
..+|.|.|||.++.++.|+-+|+. - |.|..+...+ +-|+|+|.+.+.|++.|+. ..+.+.|.+|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 468999999999999999999986 2 6899998876 6799999999999999983 36789999999999888
Q ss_pred Ccccchhhhccc
Q 003007 352 GGARRNLMLQLN 363 (858)
Q Consensus 352 ~~~r~~~~~ql~ 363 (858)
...+|.+++.+.
T Consensus 84 ~~~~r~ll~gl~ 95 (104)
T 2dhx_A 84 RAPARLLLQGLP 95 (104)
T ss_dssp CCCCCCCCCSCC
T ss_pred CCcceEeeecCC
Confidence 888888888774
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00089 Score=60.80 Aligned_cols=88 Identities=18% Similarity=0.244 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccC
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 265 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~-----fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 265 (858)
...+|.|.|||.+++++.|.-+|+. =|+|..+...+ +-|+|+|.+.+.|++.++. ..+.|.+.+|.|.-..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 4589999999999999999999996 25898887644 7799999999999999873 4678888888886543
Q ss_pred CCCCCCCCCCCccceeeeCCCCCCc
Q 003007 266 PKDNPSDKDLNQGTLVVFNLDPSVS 290 (858)
Q Consensus 266 pk~~~~~~~~~~~tLfV~NLp~~vT 290 (858)
++ ....|++.+|++.++
T Consensus 83 ~~--------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 83 PR--------APARLLLQGLPPGTS 99 (104)
T ss_dssp CC--------CCCCCCCCSCCCCCC
T ss_pred CC--------CcceEeeecCCCCCC
Confidence 32 245799999998875
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.88 E-value=0.0012 Score=60.02 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=62.7
Q ss_pred cceeeeCCCCCC-ch----hHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCCceEEEEecCCC
Q 003007 278 GTLVVFNLDPSV-SN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 352 (858)
Q Consensus 278 ~tLfV~NLp~~v-Te----edL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~Gr~I~V~~s~~~ 352 (858)
.+|+|.||+.++ +. +.++++|..|+.+......+.-| -..|.|.+.++|.+|...|++..+.|++|+|-|+++.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 589999998876 32 56789999999888876544333 4799999999999999999999999999999999865
Q ss_pred c
Q 003007 353 G 353 (858)
Q Consensus 353 ~ 353 (858)
.
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 388
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.0035 Score=57.04 Aligned_cols=75 Identities=20% Similarity=0.240 Sum_probs=62.4
Q ss_pred CcEEEEeCCCCCC-CH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCccccccccccccCC
Q 003007 192 SRTLFVRNINSNV-ED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 266 (858)
Q Consensus 192 s~tLfV~NLP~~v-te----eeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 266 (858)
.++|+|.||+.++ +. ++++++|..|+++.+.... ++-.=..|.|.++++|.+|-..|++..+.|++|+|.|+.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l-kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF-KSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE-TTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec-CcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4789999998865 22 5778999999998887532 3334578999999999999999999999999999999975
Q ss_pred C
Q 003007 267 K 267 (858)
Q Consensus 267 k 267 (858)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.23 E-value=0.013 Score=54.77 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=60.4
Q ss_pred CCCccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhCCCccCC-ceEEEEecC
Q 003007 274 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSR 350 (858)
Q Consensus 274 ~~~~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~LnG~~i~G-r~I~V~~s~ 350 (858)
.....-|.|.+.+... -..+.+.|++||+|.+... ....++-.|+|.++.+|++||. .||..+.| -.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3345679999999885 5667789999999999987 3456799999999999999998 49999985 666777654
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.97 E-value=0.057 Score=48.08 Aligned_cols=64 Identities=5% Similarity=0.050 Sum_probs=52.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eCCC------cccEEEEEEcCHHHHHHHHHHhcCCcccc
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-TACK------HRGFVMISYYDIRAARTAMRALQNKPLRR 256 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-~~~k------srG~aFV~F~d~e~A~~Al~~Lng~~l~g 256 (858)
++|.|++||+.+||+++.+.+..+.++.... +.++ .-.-|+|.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 5899999999999999999999988765543 2222 22469999999999999999999988864
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.38 E-value=0.064 Score=48.22 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=43.2
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
.++| +.|+++...||.++|++||.|.=-.+. -..|||.|.+++.|..|++.+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999855433333 3469999999999999999764
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.05 E-value=0.096 Score=47.10 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=45.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhc
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ 250 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Ln 250 (858)
.+.++| ..|.++...||.++|+.||.|.---+ .-..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wi---dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEE---ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEE---cCCeEEEEecCHHHHHHHHHhcc
Confidence 466777 99999999999999999996542112 45679999999999999999775
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.67 E-value=0.048 Score=49.13 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=43.2
Q ss_pred ceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC
Q 003007 279 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 279 tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
.++| +.|+++...||.++|++||.|.=-.+. -..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999954332333 3469999999999999999875
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.34 E-value=0.069 Score=48.15 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=44.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcC
Q 003007 193 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 251 (858)
Q Consensus 193 ~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng 251 (858)
+.++| +.|.++...||..+|+.||.|. +.--.-..|||.|.+++.|..|+..+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidDTsAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDTSAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEETTEEEEEEEEECHHHHHHHHHTT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcCCeEEEEecCHHHHHHHHHhccc
Confidence 45556 9999999999999999999543 2223456799999999999999998753
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.12 E-value=0.24 Score=46.23 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCCcccc-ccccccc
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR-RKLDIHF 263 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~~l~g-r~L~V~~ 263 (858)
..+-|.|-+.|+.. ...+...|++||+|.+... .....+..|.|.+..+|++||. .||..|.+ ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 35788888998885 6778889999999998865 4456799999999999999999 48888864 4444444
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.97 E-value=0.075 Score=50.31 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=55.7
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEE-EeC----------------C--CCccEEEEEEcCHHHHHHHHHHhCCCc
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-RET----------------P--HKRHHKFIEFYDVRAAEAALKSLNRSD 338 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~i-rit----------------~--~srG~aFVeF~d~e~A~kAl~~LnG~~ 338 (858)
.-+.|.+.|++.+ ..+.+.|++||.|.+- ... + ...++.-|+|++..+|.+||. -||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4688899876655 5566789999999772 111 1 135688999999999999998 59999
Q ss_pred cCCceEEEEecCC
Q 003007 339 IAGKRIKLEPSRP 351 (858)
Q Consensus 339 i~Gr~I~V~~s~~ 351 (858)
|.|..|=|.+..+
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887753
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.59 E-value=0.07 Score=60.83 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=43.6
Q ss_pred ccceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHH
Q 003007 277 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 333 (858)
Q Consensus 277 ~~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~ 333 (858)
+++|+|. .+..+++.+|.+.|++||.|.++........|+.|||.+.+++++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4579998 6999999999999999999999988776778999999999999977654
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=91.54 E-value=0.34 Score=43.56 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=48.1
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEe-CCC------CccEEEEEEcCHHHHHHHHHHhCCCccC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-TPH------KRHHKFIEFYDVRAAEAALKSLNRSDIA 340 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~iri-t~~------srG~aFVeF~d~e~A~kAl~~LnG~~i~ 340 (858)
-+|+|+.||+.+||+++.+.++..-.+..... .++ .-.-|+|.|.+.++...-.+.++|..+-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 36999999999999999999987655432221 111 1124899999999999999999998664
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.29 E-value=0.084 Score=60.19 Aligned_cols=56 Identities=9% Similarity=0.273 Sum_probs=42.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHH
Q 003007 191 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 247 (858)
Q Consensus 191 ~s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~ 247 (858)
..|.|||. .|.++++.+|.+.|++||+|.++.......-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 35899997 799999999999999999999987554455699999999999987765
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=81.69 E-value=0.97 Score=42.75 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=51.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE-eC----------------C--CcccEEEEEEcCHHHHHHHHHHhcCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-TA----------------C--KHRGFVMISYYDIRAARTAMRALQNK 252 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~-~~----------------~--ksrG~aFV~F~d~e~A~~Al~~Lng~ 252 (858)
..-|.|=+.|++. ...+.+.|++||.|.+-. .. + ....+..|+|.+..+|++|+. .+|.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 4566676776555 456678999999987621 11 0 135688999999999999999 4999
Q ss_pred cccccccccccc
Q 003007 253 PLRRRKLDIHFS 264 (858)
Q Consensus 253 ~l~gr~L~V~~a 264 (858)
.|.|.-|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 998876666554
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=68.06 E-value=10 Score=43.62 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=46.4
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEcCHHHHHHHHHHhcCC
Q 003007 192 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 252 (858)
Q Consensus 192 s~tLfV~NLP~~vteeeLr~lFs~fG~I~sv~~~~ksrG~aFV~F~d~e~A~~Al~~Lng~ 252 (858)
...++|+ +|..+...+|.++|+.||.|.-..+ ....|||.|.+.+.|..+++++...
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 3577776 9999999999999999997653333 4567999999999999999987643
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.90 E-value=18 Score=41.58 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=43.8
Q ss_pred cceeeeCCCCCCchhHHHHhhcccCceEEEEeCCCCccEEEEEEcCHHHHHHHHHHhC
Q 003007 278 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 335 (858)
Q Consensus 278 ~tLfV~NLp~~vTeedL~~~Fs~fG~I~~irit~~srG~aFVeF~d~e~A~kAl~~Ln 335 (858)
..++|+ ++..+...+|.++|+.||.|.=..++ ...+||.|.+.+.|..+++.++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wid---dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECS---SSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEc---CCeEEEEECCHHHHHHHHHHHH
Confidence 456665 89999999999999999965433443 3469999999999999999886
Done!