BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003008
(858 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQDAEMAQNAVR 485
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI--RGLNTIPL 597
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 204 EVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263
E+ E L L+ D +R+ I + +PL ++ L ++ A GVL LA K
Sbjct: 567 EIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 626
Query: 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD---DYYRILIIE 313
+ G L LL + EG + A L +++D DY + L +E
Sbjct: 627 AEAIEAEGATAPLTELLHSRNEG---VATYAAAVLFRMSEDKPQDYKKRLSVE 676
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 349
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 409
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 461
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 298 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 356
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 357 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 416
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 417 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 468
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 279 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 337
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 338 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 397
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 398 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 449
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 297 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 355
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 356 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 415
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 416 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 467
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 296 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 354
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 355 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 414
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 415 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 466
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 295 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 353
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 354 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 413
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 414 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 465
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 296 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 354
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 355 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 414
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 415 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 466
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 292 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 350
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 351 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 410
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 411 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 462
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 294 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 352
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 464
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 279 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 337
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 338 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 397
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 398 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 449
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 281 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 339
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 340 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 399
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 400 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 451
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 283 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 341
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 342 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 401
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 402 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 453
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ +V + G IE + + R ++ E ++C L +L+ + ++A +
Sbjct: 292 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEMAQNAVR 350
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 351 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 410
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG ++ I + AL LA+D + RI+I GL +P+
Sbjct: 411 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 462
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 175 SINVYRD--LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI- 231
+ N Y++ V + G IE + + R ++ E ++C L +L+ + + A +
Sbjct: 236 TCNNYKNKXXVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SRHQEAEXAQNAVR 294
Query: 232 ----LPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL------ 280
LP+++K L + + +A G++ NLAL +NH L E G IP+L LL
Sbjct: 295 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 354
Query: 281 -----------KANVEGSKV--IRKEARNALIELAKDDYYRILIIEEGLVPVPM 321
+ VEG + I + AL LA+D + RI+I GL +P+
Sbjct: 355 TQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVI--RGLNTIPL 406
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 7/107 (6%)
Query: 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDI-----LPL 234
+ LV + +E + + R ++ E ++C L +L+ + ++A + +P
Sbjct: 303 KTLVTQNSGVEALIHAILRAGDKDDITEPAVCALRHLT-SRHPEAEMAQNSVRLNYGIPA 361
Query: 235 LIKSLEDENM-KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL 280
++K L N + +A G++ NLAL +NH L EA VIP+L LL
Sbjct: 362 IVKLLNQPNQWPLVKATIGLIRNLALCPANHAPLQEAAVIPRLVQLL 408
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 204 EVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263
E+ E L L+ D +R++I + +PL ++ L ++ A GVL LA K
Sbjct: 435 EIVEGCTGALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDKEA 494
Query: 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD---DYYRILIIE 313
+ + G L LL + EG+ A L +++D DY + + +E
Sbjct: 495 ADAIDAEGASAPLMELLHSRNEGTATY---AAAVLFRISEDKNPDYRKRVSVE 544
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807
+P++++Q+ S + ++A+ +L++I S G + +AV G + LV+L+ + + ++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 808 AGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLS 841
L L N+ S +E A+I AGA+PAL +++ S
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
A+P L++ + S + + + A+ L+ I S G + +AV G + LV+L+ + + +
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 807 EAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLS 841
+ L L N+ S +E A+I AGA+PAL +++ S
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807
+P++++Q+ S + ++A+ +L++I S G + +AV G + LV+L+ + + ++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 808 AGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
A+P L++ + S + + + A+ L+ I S G + +AV G + LV+L+ + + +
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 807 EAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
+ L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807
+P++ +Q+ S + + +A + ++I+S+G + +AV G + LV+L+ + + ++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 808 AGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
A+P L++ + S + + + A+ L+ I S G + +AV G + LV+L+ + + +
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 807 EAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
+ L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807
+P++ +Q+ S + + +A + ++I+S+G + +AV G + LV+L+ + + ++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGN-EQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 808 AGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
A+P L++ + S + + + A+ L+ I S G + +AV G + LV+L+ + + +
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 113
Query: 807 EAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
+ L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806
A+P L++ + S + + + A+ L+ I S G + +AV G + LV+L+ + + +
Sbjct: 97 ALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLSSPNEQIL 155
Query: 807 EAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQ-WTRALRLLRNL 856
+ L L N+ S +E A+I AGA+PAL +++ S Q AL L N+
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 207
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 177 NVYRDLVAECGAIEEITGLLTRP---SLTSEVKEQSMCTLWNLSVDKKHRLKI-ANTDIL 232
+V+RDLV + GA++ + LL P SL TL NL +K I A IL
Sbjct: 126 SVFRDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQIL 185
Query: 233 PLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKAN 283
P L++ L ++ +V ++ L + ++V+ GV+P+L LL A+
Sbjct: 186 PTLVRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGAS 237
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSL 239
+V + GA+ LL S + +V+EQ++ L N++ D K L +AN +LPLL +
Sbjct: 117 VVIDHGAVPIFVKLLG--SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 174
Query: 240 EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299
E + + A L+N K + +P LA L+ +N E + +A AL
Sbjct: 175 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEE---VLTDACWALS 231
Query: 300 ELAKDDYYRI-LIIEEGLVP 318
L+ +I +IE G+ P
Sbjct: 232 YLSDGTNDKIQAVIEAGVCP 251
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSL 239
+V + GA+ LL S + +V+EQ++ L N++ D K L +AN +LPLL +
Sbjct: 155 VVIDHGAVPIFVKLLG--SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLN 212
Query: 240 EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299
E + + A L+N K + +P LA L+ +N E + +A AL
Sbjct: 213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEE---VLTDACWALS 269
Query: 300 ELAKDDYYRI-LIIEEGLVP 318
L+ +I +IE G+ P
Sbjct: 270 YLSDGTNDKIQAVIEAGVCP 289
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 177 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 236
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 235
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 153 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 212
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 213 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 261
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 133 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 192
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 193 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 241
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 163 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 222
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 223 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 271
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 230
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 161 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 220
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 221 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 269
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 122 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 181
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 182 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 230
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 234
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 126 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 185
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 186 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 234
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 235
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 196 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 255
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 256 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 304
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD----ILPL 234
+RDLV + GAI+ + LL P L++ W LS +++ D ILP
Sbjct: 127 FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPT 186
Query: 235 LIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKA 282
L++ L + +V + ++ L + ++V+ GV+P+L LL A
Sbjct: 187 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 235
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 10/141 (7%)
Query: 183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK-IANTDILPLLIKSLED 241
+ + G +E + LLT S SEV++++ L N++ +K I + + +L+K L
Sbjct: 82 IVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 139
Query: 242 ENMKVKEAAGGVLANLALSKSNHNI--LVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299
+ +V++ A LAN+A S + I +V+AG + L LL + ++KEA AL
Sbjct: 140 TDSEVQKEAARALANIA-SGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALA 195
Query: 300 ELAKDDYYRI-LIIEEGLVPV 319
+A I I++ G V V
Sbjct: 196 NIASGPTSAIKAIVDAGGVEV 216
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807
+ +L++ + S SE ++ A +L I S G + +A+ GG+ LVKL+ + +
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIAS-GPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 808 AGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQWTR-ALRLLRNL 856
L N+ S E AI+ AG V L +++ S + + A R L N+
Sbjct: 63 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 113
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVAS 787
SGPD+ + ++ + L++ + S SE ++ A L I S G ++ +A+
Sbjct: 115 SGPDEAIKAIVD-----AGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVD 168
Query: 788 EGGIFPLVKLIEEGSNRAVEAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQW 846
GG+ LVKL+ + + L N+ S + AI+ AG V L++++ S +
Sbjct: 169 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEV 228
Query: 847 TR-ALRLLRNL 856
+ A R L N+
Sbjct: 229 QKEAQRALENI 239
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVAS 787
SGPD+ + ++ + L++ + S SE ++ A L I S G ++ +A+
Sbjct: 73 SGPDEAIKAIVD-----AGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVD 126
Query: 788 EGGIFPLVKLIEEGSNRAVEAGLAILYNL-SMDSENHSAIIAAGAVPALRRIVLSQRPQW 846
GG+ LVKL+ + + L N+ S E AI+ AG V L +++ S +
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 847 TR-ALRLLRNL 856
+ A R L N+
Sbjct: 187 QKEAARALANI 197
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 35/282 (12%)
Query: 558 AAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF 617
+ E + +I GNV ++T VL + ++G+ ++ P L R A L
Sbjct: 100 SVEVKEQAIWALGNV----AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 155
Query: 618 I----------TIIDPSMDT----IISADIESGLDAIFQQKALEDTDSD-----IEGRQP 658
+ +++ ++ T I S D E+ +DA + L D + I+ R P
Sbjct: 156 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 215
Query: 659 EKYA-LDIEEASLAISAGARLLTKLLDSKQF-CQTINSTHFIKLLRKILKSNVPLHYKDW 716
++ L E++L + R + ++ Q + + + LR +L S K+
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE- 274
Query: 717 VAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776
AC + +G + + I+ + IP L++ ++ + ++ A ++ S
Sbjct: 275 --ACWTISNITAGNTEQIQAVIDANL-----IPPLVKLLEVAEDKTKKEACWAISNASSG 327
Query: 777 GVV--DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
G+ D R + S+G I PL L+E NR +E L L N+
Sbjct: 328 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 369
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 35/282 (12%)
Query: 558 AAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF 617
+ E + +I GNV ++T VL + ++G+ ++ P L R A L
Sbjct: 100 SVEVKEQAIWALGNV----AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 155
Query: 618 I----------TIIDPSMDT----IISADIESGLDAIFQQKALEDTDSD-----IEGRQP 658
+ +++ ++ T I S D E+ +DA + L D + I+ R P
Sbjct: 156 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 215
Query: 659 EKYA-LDIEEASLAISAGARLLTKLLDSKQF-CQTINSTHFIKLLRKILKSNVPLHYKDW 716
++ L E++L + R + ++ Q + + + LR +L S K+
Sbjct: 216 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE- 274
Query: 717 VAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776
AC + +G + + I+ + IP L++ ++ + ++ A ++ S
Sbjct: 275 --ACWTISNITAGNTEQIQAVIDANL-----IPPLVKLLEVAEDKTKKEACWAISNASSG 327
Query: 777 GVV--DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
G+ D R + S+G I PL L+E NR +E L L N+
Sbjct: 328 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 369
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 35/282 (12%)
Query: 558 AAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF 617
+ E + +I GNV ++T VL + ++G+ ++ P L R A L
Sbjct: 98 SVEVKEQAIWALGNV----AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 153
Query: 618 I----------TIIDPSMDT----IISADIESGLDAIFQQKALEDTDSD-----IEGRQP 658
+ +++ ++ T I S D E+ +DA + L D + I+ R P
Sbjct: 154 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 213
Query: 659 EKYA-LDIEEASLAISAGARLLTKLLDSKQF-CQTINSTHFIKLLRKILKSNVPLHYKDW 716
++ L E++L + R + ++ Q + + + LR +L S K+
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE- 272
Query: 717 VAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776
AC + +G + + I+ + IP L++ ++ + ++ A ++ S
Sbjct: 273 --ACWTISNITAGNTEQIQAVIDANL-----IPPLVKLLEVAEYKTKKEACWAISNASSG 325
Query: 777 GVV--DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
G+ D R + S+G I PL L+E NR +E L L N+
Sbjct: 326 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 367
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 35/270 (12%)
Query: 570 GNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI----------T 619
GNV ++T VL + ++G+ ++ P L R A L + +
Sbjct: 111 GNV----AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 166
Query: 620 IIDPSMDT----IISADIESGLDAIFQQKALEDTDSD-----IEGRQPEKYA-LDIEEAS 669
++ ++ T I S D E+ +DA + L D + I+ R P++ L E++
Sbjct: 167 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 226
Query: 670 LAISAGARLLTKLLDSKQF-CQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLS 728
L + R + ++ Q + + + LR +L S K+ AC + +
Sbjct: 227 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE---ACWTISNITA 283
Query: 729 GPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV--DSTRAVA 786
G + + I+ + IP L++ ++ + ++ A ++ S G+ D R +
Sbjct: 284 GNTEQIQAVIDANL-----IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLV 338
Query: 787 SEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
S+G I PL L+E NR +E L L N+
Sbjct: 339 SQGCIKPLCDLLEIADNRIIEVTLDALENI 368
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 35/270 (12%)
Query: 570 GNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI----------T 619
GNV ++T VL + ++G+ ++ P L R A L + +
Sbjct: 111 GNV----AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 166
Query: 620 IIDPSMDT----IISADIESGLDAIFQQKALEDTDSD-----IEGRQPEKYA-LDIEEAS 669
++ ++ T I S D E+ +DA + L D + I+ R P++ L E++
Sbjct: 167 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 226
Query: 670 LAISAGARLLTKLLDSKQF-CQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLS 728
L + R + ++ Q + + + LR +L S K+ AC + +
Sbjct: 227 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE---ACWTISNITA 283
Query: 729 GPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV--DSTRAVA 786
G + + I+ + IP L++ ++ + ++ A ++ S G+ D R +
Sbjct: 284 GNTEQIQAVIDANL-----IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLV 338
Query: 787 SEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
S+G I PL L+E NR +E L L N+
Sbjct: 339 SQGCIKPLCDLLEIADNRIIEVTLDALENI 368
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 117/282 (41%), Gaps = 35/282 (12%)
Query: 558 AAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF 617
+ E + +I GNV ++T VL + ++G+ ++ P L R A L
Sbjct: 98 SVEVKEQAIWALGNV----AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 153
Query: 618 I----------TIIDPSMDT----IISADIESGLDAIFQQKALEDTDSD-----IEGRQP 658
+ +++ ++ T I S D E+ +DA + L D + I+ R P
Sbjct: 154 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIP 213
Query: 659 EKYA-LDIEEASLAISAGARLLTKLLDSKQF-CQTINSTHFIKLLRKILKSNVPLHYKDW 716
++ L E++L + R + ++ Q + + + LR +L S K+
Sbjct: 214 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKE- 272
Query: 717 VAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776
AC + +G + + I+ + IP L++ ++ + ++ A ++ S
Sbjct: 273 --ACWTISNITAGNTEQIQAVIDANL-----IPPLVKLLEVAEYKTKKEACWAISNASSG 325
Query: 777 GVV--DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816
G+ D R + S+G I PL L+E NR +E L L N+
Sbjct: 326 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 367
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 748 IPRLIEQIKSFSSEAREAAVIELNRIISEGVV--DSTRAVASEGGIFPLVKLIEEGSNRA 805
IP L++ ++ + ++ A ++ S G+ D R + S+G I PL L+E NR
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444
Query: 806 VEAGLAILYNL 816
+E L L N+
Sbjct: 445 IEVTLDALENI 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,645,767
Number of Sequences: 62578
Number of extensions: 884740
Number of successful extensions: 2571
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2330
Number of HSP's gapped (non-prelim): 276
length of query: 858
length of database: 14,973,337
effective HSP length: 107
effective length of query: 751
effective length of database: 8,277,491
effective search space: 6216395741
effective search space used: 6216395741
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)