Query 003008
Match_columns 858
No_of_seqs 318 out of 2572
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 15:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8.4E-52 1.8E-56 505.5 62.1 684 101-856 57-762 (2102)
2 PLN03200 cellulose synthase-in 100.0 4.7E-49 1E-53 481.5 57.2 633 98-856 95-809 (2102)
3 KOG4224 Armadillo repeat prote 100.0 3.7E-34 8.1E-39 286.4 23.5 403 100-623 83-496 (550)
4 KOG4224 Armadillo repeat prote 100.0 3E-32 6.4E-37 272.8 23.1 371 144-628 83-454 (550)
5 KOG0166 Karyopherin (importin) 100.0 1.2E-30 2.7E-35 281.5 30.6 381 87-623 100-489 (514)
6 COG5064 SRP1 Karyopherin (impo 100.0 8.9E-31 1.9E-35 260.1 22.8 388 83-624 101-500 (526)
7 COG5064 SRP1 Karyopherin (impo 100.0 8.2E-31 1.8E-35 260.3 21.2 367 416-855 108-493 (526)
8 KOG0166 Karyopherin (importin) 100.0 8.5E-30 1.9E-34 275.0 25.4 364 419-855 106-483 (514)
9 PF05804 KAP: Kinesin-associat 99.9 7.8E-24 1.7E-28 242.2 37.0 394 106-623 254-652 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.6E-21 3.5E-26 223.3 35.9 346 161-628 264-615 (708)
11 KOG2122 Beta-catenin-binding p 99.9 1.4E-20 3.1E-25 216.0 23.5 350 106-495 201-604 (2195)
12 KOG1048 Neural adherens juncti 99.8 1.2E-18 2.6E-23 194.5 26.0 425 101-594 232-699 (717)
13 KOG1048 Neural adherens juncti 99.8 4.4E-17 9.5E-22 182.1 22.4 421 147-628 234-692 (717)
14 KOG4199 Uncharacterized conser 99.7 1.3E-15 2.9E-20 152.5 22.8 361 206-628 76-452 (461)
15 KOG1222 Kinesin associated pro 99.7 2.1E-14 4.6E-19 149.8 26.7 382 121-624 281-667 (791)
16 KOG4500 Rho/Rac GTPase guanine 99.6 8.1E-14 1.8E-18 144.1 22.7 438 118-619 57-518 (604)
17 PF04826 Arm_2: Armadillo-like 99.6 5.7E-14 1.2E-18 143.7 20.0 199 98-304 8-206 (254)
18 KOG4199 Uncharacterized conser 99.6 7.7E-13 1.7E-17 133.0 24.3 329 144-583 102-449 (461)
19 KOG2122 Beta-catenin-binding p 99.6 1E-13 2.2E-18 160.6 19.5 349 165-622 213-603 (2195)
20 PF04826 Arm_2: Armadillo-like 99.5 2.5E-12 5.5E-17 131.6 18.5 174 141-325 8-184 (254)
21 KOG4500 Rho/Rac GTPase guanine 99.5 2.1E-11 4.6E-16 126.4 25.0 408 99-577 84-518 (604)
22 KOG1222 Kinesin associated pro 99.5 2.7E-10 5.9E-15 119.6 33.2 273 164-516 281-559 (791)
23 PRK09687 putative lyase; Provi 99.5 9.2E-12 2E-16 130.6 22.6 162 423-618 24-186 (280)
24 PF10508 Proteasom_PSMB: Prote 99.4 1.3E-09 2.9E-14 124.6 37.1 388 105-600 41-438 (503)
25 PRK13800 putative oxidoreducta 99.4 1.5E-10 3.3E-15 141.9 31.3 279 99-532 618-896 (897)
26 PF10508 Proteasom_PSMB: Prote 99.3 1E-09 2.2E-14 125.6 31.5 345 101-510 76-439 (503)
27 PRK13800 putative oxidoreducta 99.3 2.9E-10 6.4E-15 139.3 28.6 273 423-855 622-896 (897)
28 PRK09687 putative lyase; Provi 99.3 5.4E-10 1.2E-14 117.3 21.8 254 147-531 24-278 (280)
29 KOG1293 Proteins containing ar 99.2 3.5E-09 7.5E-14 116.4 27.4 465 97-628 46-541 (678)
30 PF01602 Adaptin_N: Adaptin N 99.2 4.4E-08 9.5E-13 114.7 39.3 500 105-854 7-520 (526)
31 KOG1293 Proteins containing ar 99.2 9.9E-09 2.1E-13 112.9 28.7 449 105-627 13-497 (678)
32 cd00256 VATPase_H VATPase_H, r 99.2 2.8E-09 6E-14 116.2 23.3 348 101-491 52-424 (429)
33 cd00020 ARM Armadillo/beta-cat 99.2 4.8E-10 1E-14 102.7 14.3 114 144-259 5-120 (120)
34 cd00256 VATPase_H VATPase_H, r 99.1 1.9E-09 4.2E-14 117.5 19.3 313 423-816 102-423 (429)
35 cd00020 ARM Armadillo/beta-cat 99.1 1.6E-09 3.4E-14 99.3 13.9 117 182-303 2-120 (120)
36 PF01602 Adaptin_N: Adaptin N 99.1 1E-07 2.2E-12 111.6 32.6 396 102-618 42-442 (526)
37 KOG2171 Karyopherin (importin) 99.0 1.3E-07 2.7E-12 110.9 29.3 459 101-617 35-543 (1075)
38 PTZ00429 beta-adaptin; Provisi 98.9 3.7E-05 8.1E-10 90.8 45.4 400 101-622 31-435 (746)
39 KOG2171 Karyopherin (importin) 98.9 9.1E-06 2E-10 95.7 38.8 259 147-535 5-278 (1075)
40 KOG2023 Nuclear transport rece 98.7 9.3E-06 2E-10 89.6 28.2 429 114-621 101-550 (885)
41 PF03224 V-ATPase_H_N: V-ATPas 98.7 8.9E-08 1.9E-12 103.3 12.6 220 101-325 54-291 (312)
42 KOG2759 Vacuolar H+-ATPase V1 98.7 1.1E-06 2.3E-11 92.6 18.6 352 423-816 66-436 (442)
43 KOG0168 Putative ubiquitin fus 98.6 5.3E-06 1.2E-10 93.8 23.3 396 102-514 211-653 (1051)
44 KOG3678 SARM protein (with ste 98.6 2E-06 4.3E-11 90.8 18.7 271 140-492 174-452 (832)
45 KOG0168 Putative ubiquitin fus 98.6 4.8E-06 1E-10 94.1 22.1 193 423-624 168-368 (1051)
46 KOG2759 Vacuolar H+-ATPase V1 98.6 1.1E-05 2.3E-10 85.3 22.0 301 104-492 116-438 (442)
47 KOG0946 ER-Golgi vesicle-tethe 98.6 0.00027 5.9E-09 79.9 34.2 347 100-501 20-409 (970)
48 KOG1789 Endocytosis protein RM 98.5 0.00016 3.5E-09 83.3 31.7 111 423-535 1772-1883(2235)
49 PTZ00429 beta-adaptin; Provisi 98.5 0.00023 5.1E-09 84.2 34.3 176 104-300 70-245 (746)
50 KOG2973 Uncharacterized conser 98.5 3.6E-05 7.8E-10 78.0 23.3 292 105-492 6-315 (353)
51 KOG1824 TATA-binding protein-i 98.5 0.00074 1.6E-08 77.9 35.7 409 102-625 611-1041(1233)
52 PF03224 V-ATPase_H_N: V-ATPas 98.4 2.4E-06 5.2E-11 92.2 13.7 176 103-281 106-293 (312)
53 KOG2160 Armadillo/beta-catenin 98.4 9.9E-06 2.1E-10 84.5 16.9 185 433-620 94-282 (342)
54 KOG3678 SARM protein (with ste 98.4 3.5E-05 7.6E-10 81.6 20.4 273 223-621 173-453 (832)
55 KOG4646 Uncharacterized conser 98.3 5.7E-06 1.2E-10 73.2 11.3 129 146-280 16-146 (173)
56 TIGR02270 conserved hypothetic 98.3 9.8E-05 2.1E-09 81.5 22.9 149 423-618 55-205 (410)
57 KOG2160 Armadillo/beta-catenin 98.2 6.1E-05 1.3E-09 78.8 18.3 184 114-303 94-282 (342)
58 KOG4646 Uncharacterized conser 98.2 1.4E-05 3E-10 70.8 10.8 124 101-228 15-139 (173)
59 KOG2973 Uncharacterized conser 98.2 0.00042 9E-09 70.5 21.5 291 149-530 6-310 (353)
60 KOG0946 ER-Golgi vesicle-tethe 98.1 0.00098 2.1E-08 75.6 25.8 283 145-536 21-347 (970)
61 KOG1241 Karyopherin (importin) 98.1 0.0033 7.1E-08 71.4 29.6 356 109-535 97-477 (859)
62 PF00514 Arm: Armadillo/beta-c 98.1 5.5E-06 1.2E-10 59.4 5.4 41 452-492 1-41 (41)
63 TIGR02270 conserved hypothetic 98.1 0.0014 3E-08 72.6 25.6 245 100-492 52-296 (410)
64 KOG1824 TATA-binding protein-i 98.0 0.013 2.9E-07 68.0 32.7 112 710-842 945-1056(1233)
65 KOG2023 Nuclear transport rece 98.0 0.00064 1.4E-08 75.6 21.1 409 96-578 383-817 (885)
66 KOG1060 Vesicle coat complex A 98.0 0.0024 5.2E-08 72.5 25.4 410 105-624 38-462 (968)
67 KOG1789 Endocytosis protein RM 97.9 0.0052 1.1E-07 71.5 26.3 347 120-514 1742-2140(2235)
68 PF13646 HEAT_2: HEAT repeats; 97.9 4.6E-05 1E-09 65.2 7.8 87 424-531 1-88 (88)
69 KOG0212 Uncharacterized conser 97.9 0.00046 1E-08 75.4 16.3 320 421-822 83-410 (675)
70 PF00514 Arm: Armadillo/beta-c 97.8 2.7E-05 5.7E-10 55.8 4.3 41 219-259 1-41 (41)
71 COG1413 FOG: HEAT repeat [Ener 97.8 0.0031 6.8E-08 69.0 22.3 155 423-622 44-211 (335)
72 KOG0212 Uncharacterized conser 97.7 0.0017 3.7E-08 71.1 18.0 357 101-535 83-444 (675)
73 KOG1241 Karyopherin (importin) 97.7 0.01 2.2E-07 67.6 24.2 370 100-534 317-710 (859)
74 COG1413 FOG: HEAT repeat [Ener 97.7 0.0061 1.3E-07 66.7 22.8 157 421-619 73-241 (335)
75 KOG4413 26S proteasome regulat 97.7 0.054 1.2E-06 55.7 26.5 165 115-281 94-265 (524)
76 PF14664 RICTOR_N: Rapamycin-i 97.7 0.03 6.4E-07 61.4 26.8 171 451-628 13-184 (371)
77 KOG0213 Splicing factor 3b, su 97.6 0.22 4.8E-06 56.8 36.2 149 464-621 800-955 (1172)
78 PF13646 HEAT_2: HEAT repeats; 97.6 0.00029 6.3E-09 60.2 8.0 84 748-853 1-87 (88)
79 KOG4413 26S proteasome regulat 97.6 0.012 2.5E-07 60.5 19.9 206 420-630 126-343 (524)
80 KOG0213 Splicing factor 3b, su 97.5 0.011 2.3E-07 66.8 20.5 180 421-622 882-1067(1172)
81 KOG1242 Protein containing ada 97.5 0.038 8.2E-07 62.1 24.5 341 146-620 96-444 (569)
82 PF14664 RICTOR_N: Rapamycin-i 97.5 0.059 1.3E-06 59.1 25.7 170 104-281 27-198 (371)
83 KOG1060 Vesicle coat complex A 97.4 0.18 3.9E-06 58.0 29.3 143 150-313 39-183 (968)
84 KOG1062 Vesicle coat complex A 97.4 0.039 8.4E-07 63.5 24.2 301 467-845 111-456 (866)
85 PF05536 Neurochondrin: Neuroc 97.4 0.0025 5.4E-08 73.5 14.5 154 147-304 6-169 (543)
86 COG5215 KAP95 Karyopherin (imp 97.3 0.39 8.5E-06 53.3 34.5 353 108-579 100-480 (858)
87 KOG1062 Vesicle coat complex A 97.3 0.045 9.7E-07 63.0 23.2 284 156-535 117-414 (866)
88 KOG1078 Vesicle coat complex C 97.3 0.34 7.4E-06 55.9 29.9 63 749-817 469-531 (865)
89 KOG1059 Vesicle coat complex A 97.3 0.11 2.4E-06 59.1 25.1 184 101-306 143-332 (877)
90 KOG2734 Uncharacterized conser 97.2 0.073 1.6E-06 57.1 21.8 267 166-535 104-400 (536)
91 smart00185 ARM Armadillo/beta- 97.2 0.00083 1.8E-08 47.9 5.4 40 453-492 2-41 (41)
92 PF05536 Neurochondrin: Neuroc 97.2 0.013 2.7E-07 67.8 17.6 155 102-262 5-171 (543)
93 COG5231 VMA13 Vacuolar H+-ATPa 97.1 0.055 1.2E-06 55.6 19.1 255 154-491 157-427 (432)
94 KOG2734 Uncharacterized conser 97.1 0.024 5.1E-07 60.7 16.6 222 416-641 119-367 (536)
95 smart00185 ARM Armadillo/beta- 97.1 0.0013 2.8E-08 46.9 5.3 40 220-259 2-41 (41)
96 KOG1077 Vesicle coat complex A 97.0 0.4 8.7E-06 54.6 26.2 168 423-630 330-498 (938)
97 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0017 3.7E-08 49.9 5.7 55 436-490 1-55 (55)
98 KOG0567 HEAT repeat-containing 96.9 0.086 1.9E-06 53.1 17.8 59 746-816 218-278 (289)
99 KOG1517 Guanine nucleotide bin 96.9 0.017 3.7E-07 67.9 14.7 204 421-628 511-740 (1387)
100 KOG1059 Vesicle coat complex A 96.9 0.58 1.3E-05 53.6 25.9 179 423-621 182-366 (877)
101 KOG0211 Protein phosphatase 2A 96.8 1.5 3.2E-05 52.3 30.5 572 103-816 83-662 (759)
102 KOG1061 Vesicle coat complex A 96.8 0.091 2E-06 60.5 19.4 400 105-621 124-529 (734)
103 PF09759 Atx10homo_assoc: Spin 96.8 0.0054 1.2E-07 53.0 7.5 66 163-228 3-70 (102)
104 PF10165 Ric8: Guanine nucleot 96.6 0.12 2.6E-06 58.5 19.1 138 166-304 1-169 (446)
105 KOG1077 Vesicle coat complex A 96.6 0.34 7.3E-06 55.2 21.6 103 465-578 113-216 (938)
106 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0042 9.1E-08 47.6 4.9 55 117-173 1-55 (55)
107 COG5215 KAP95 Karyopherin (imp 96.5 2.1 4.5E-05 47.9 34.4 378 114-621 16-438 (858)
108 COG5181 HSH155 U2 snRNP splice 96.3 0.057 1.2E-06 60.0 13.3 182 421-623 687-873 (975)
109 KOG1517 Guanine nucleotide bin 96.3 0.066 1.4E-06 63.2 14.5 202 99-306 509-735 (1387)
110 PF12348 CLASP_N: CLASP N term 96.3 0.028 6E-07 57.7 10.6 180 432-624 17-210 (228)
111 PF09759 Atx10homo_assoc: Spin 96.3 0.018 3.8E-07 49.9 7.4 69 246-315 2-72 (102)
112 COG5231 VMA13 Vacuolar H+-ATPa 96.3 0.33 7E-06 50.2 17.4 105 430-535 157-265 (432)
113 PF12348 CLASP_N: CLASP N term 96.2 0.05 1.1E-06 55.8 12.2 181 114-304 18-207 (228)
114 KOG1061 Vesicle coat complex A 96.2 0.23 5.1E-06 57.3 18.1 190 422-624 121-312 (734)
115 PF12755 Vac14_Fab1_bd: Vacuol 96.2 0.014 3.1E-07 50.4 6.4 92 763-856 3-94 (97)
116 KOG2259 Uncharacterized conser 96.2 0.25 5.4E-06 55.8 17.3 99 742-851 369-467 (823)
117 KOG0211 Protein phosphatase 2A 96.2 0.47 1E-05 56.3 20.8 414 109-619 244-663 (759)
118 KOG2259 Uncharacterized conser 96.0 0.045 9.7E-07 61.5 10.8 181 423-624 199-406 (823)
119 PF10165 Ric8: Guanine nucleot 95.9 0.29 6.3E-06 55.4 17.2 158 99-257 19-216 (446)
120 COG5369 Uncharacterized conser 95.9 0.03 6.5E-07 61.3 8.4 136 165-305 406-547 (743)
121 COG5240 SEC21 Vesicle coat com 95.8 4.3 9.4E-05 45.5 32.6 68 464-535 265-332 (898)
122 COG5369 Uncharacterized conser 95.7 0.064 1.4E-06 58.8 10.2 166 144-314 429-606 (743)
123 KOG1242 Protein containing ada 95.7 0.93 2E-05 51.3 19.5 188 423-621 135-325 (569)
124 KOG0567 HEAT repeat-containing 95.7 1.9 4.2E-05 43.7 19.5 100 439-571 173-272 (289)
125 COG5096 Vesicle coat complex, 95.5 0.15 3.4E-06 59.8 13.2 66 747-816 128-193 (757)
126 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.042 9.1E-07 48.9 6.4 70 423-492 44-115 (119)
127 KOG0915 Uncharacterized conser 95.4 5.2 0.00011 50.1 25.4 109 423-534 999-1112(1702)
128 PF11841 DUF3361: Domain of un 95.2 0.26 5.7E-06 46.3 11.2 124 497-623 4-134 (160)
129 PF04063 DUF383: Domain of unk 95.1 0.13 2.9E-06 50.6 9.3 121 161-281 10-157 (192)
130 PF11841 DUF3361: Domain of un 94.9 0.56 1.2E-05 44.2 12.4 129 181-312 5-142 (160)
131 PF04078 Rcd1: Cell differenti 94.6 1.7 3.8E-05 44.3 16.0 196 116-313 8-228 (262)
132 KOG1058 Vesicle coat complex C 94.5 3.2 6.9E-05 48.1 19.1 165 431-625 108-277 (948)
133 COG5096 Vesicle coat complex, 94.4 0.77 1.7E-05 54.2 14.9 167 431-621 28-196 (757)
134 COG5181 HSH155 U2 snRNP splice 94.3 3.7 8.1E-05 46.3 18.7 257 188-494 605-872 (975)
135 PF04063 DUF383: Domain of unk 94.1 0.31 6.8E-06 48.0 9.5 93 146-240 52-157 (192)
136 PF08045 CDC14: Cell division 93.8 0.68 1.5E-05 47.5 11.4 97 438-534 107-206 (257)
137 PF02985 HEAT: HEAT repeat; I 93.8 0.11 2.3E-06 34.4 3.8 28 748-775 2-29 (31)
138 PF02985 HEAT: HEAT repeat; I 93.7 0.085 1.8E-06 34.9 3.2 29 791-819 2-30 (31)
139 PRK14707 hypothetical protein; 93.5 34 0.00075 44.9 41.4 210 422-641 416-631 (2710)
140 KOG1058 Vesicle coat complex C 93.4 8.7 0.00019 44.7 20.1 139 462-623 316-466 (948)
141 COG5240 SEC21 Vesicle coat com 93.2 4.3 9.3E-05 45.5 16.7 57 118-178 279-335 (898)
142 KOG1240 Protein kinase contain 93.1 4.4 9.6E-05 49.5 17.9 250 189-535 424-685 (1431)
143 KOG1943 Beta-tubulin folding c 93.0 28 0.0006 42.5 31.4 150 101-258 340-499 (1133)
144 KOG1240 Protein kinase contain 92.8 2.5 5.5E-05 51.5 15.5 108 423-535 618-725 (1431)
145 KOG1943 Beta-tubulin folding c 92.8 30 0.00065 42.3 26.1 111 462-581 340-460 (1133)
146 PF05004 IFRD: Interferon-rela 92.6 7.3 0.00016 41.8 17.7 190 424-619 45-256 (309)
147 PF12755 Vac14_Fab1_bd: Vacuol 92.6 0.69 1.5E-05 40.0 8.0 69 462-533 26-94 (97)
148 PF11698 V-ATPase_H_C: V-ATPas 92.6 0.3 6.4E-06 43.6 5.8 71 745-816 42-113 (119)
149 PF14668 RICTOR_V: Rapamycin-i 92.5 0.63 1.4E-05 37.7 7.1 67 439-505 4-71 (73)
150 PF05004 IFRD: Interferon-rela 92.0 11 0.00025 40.4 18.3 108 191-302 47-159 (309)
151 PF12717 Cnd1: non-SMC mitotic 91.9 2.4 5.1E-05 41.5 12.0 92 116-219 1-93 (178)
152 PF12717 Cnd1: non-SMC mitotic 91.6 0.91 2E-05 44.5 8.7 88 759-855 1-89 (178)
153 KOG2611 Neurochondrin/leucine- 91.0 4.1 9E-05 44.7 13.3 130 150-281 15-162 (698)
154 KOG3036 Protein involved in ce 90.9 20 0.00043 36.3 21.6 206 104-314 28-258 (293)
155 KOG2062 26S proteasome regulat 90.7 2.2 4.8E-05 49.2 11.4 152 427-606 524-680 (929)
156 KOG3036 Protein involved in ce 90.6 7.7 0.00017 39.1 13.7 110 116-227 138-256 (293)
157 KOG1832 HIV-1 Vpr-binding prot 90.6 3.6 7.9E-05 48.3 13.1 34 290-324 369-402 (1516)
158 PF08569 Mo25: Mo25-like; Int 90.4 11 0.00023 40.9 16.1 164 459-628 72-246 (335)
159 KOG4151 Myosin assembly protei 90.2 1.8 3.9E-05 50.5 10.5 195 416-619 498-698 (748)
160 KOG2999 Regulator of Rac1, req 90.2 6.2 0.00013 44.2 13.9 155 464-622 84-244 (713)
161 PF14668 RICTOR_V: Rapamycin-i 88.3 1.9 4.2E-05 34.9 6.4 67 163-230 4-70 (73)
162 KOG1832 HIV-1 Vpr-binding prot 88.2 21 0.00045 42.5 16.7 158 458-629 596-782 (1516)
163 PF12719 Cnd3: Nuclear condens 88.0 5.6 0.00012 42.6 12.0 170 102-283 26-209 (298)
164 PF13764 E3_UbLigase_R4: E3 ub 87.9 64 0.0014 39.2 21.5 180 141-324 112-327 (802)
165 COG5116 RPN2 26S proteasome re 87.6 3.6 7.8E-05 46.0 10.0 125 427-576 521-648 (926)
166 PF08045 CDC14: Cell division 87.4 6.7 0.00014 40.4 11.3 95 162-257 107-205 (257)
167 KOG4535 HEAT and armadillo rep 86.8 14 0.00031 40.8 13.7 66 756-821 540-606 (728)
168 KOG2032 Uncharacterized conser 86.1 34 0.00074 38.2 16.2 148 466-618 261-414 (533)
169 KOG2025 Chromosome condensatio 86.0 8.9 0.00019 44.4 12.2 105 423-532 86-190 (892)
170 PF11701 UNC45-central: Myosin 85.8 2.8 6E-05 40.1 7.3 104 429-533 50-157 (157)
171 KOG4535 HEAT and armadillo rep 85.5 1.1 2.4E-05 48.9 4.8 180 119-301 407-601 (728)
172 PF04078 Rcd1: Cell differenti 85.4 5.3 0.00012 40.9 9.3 144 439-588 67-227 (262)
173 PF11701 UNC45-central: Myosin 85.1 3.8 8.3E-05 39.1 7.9 144 148-299 5-155 (157)
174 PF06025 DUF913: Domain of Unk 84.7 50 0.0011 36.5 17.4 96 229-325 105-205 (379)
175 KOG4151 Myosin assembly protei 84.0 5 0.00011 47.1 9.4 174 102-278 541-719 (748)
176 PF07814 WAPL: Wings apart-lik 83.9 68 0.0015 35.3 18.1 92 465-560 23-116 (361)
177 PF12031 DUF3518: Domain of un 83.7 2.7 5.9E-05 42.2 6.2 80 162-242 140-228 (257)
178 KOG4464 Signaling protein RIC- 83.7 73 0.0016 34.8 18.8 142 177-325 40-196 (532)
179 PRK14707 hypothetical protein; 83.5 1.7E+02 0.0037 39.1 45.3 352 147-571 164-521 (2710)
180 PF12719 Cnd3: Nuclear condens 82.8 31 0.00068 36.8 14.7 163 146-318 26-200 (298)
181 PF06371 Drf_GBD: Diaphanous G 82.6 14 0.00029 36.3 11.0 111 146-258 66-186 (187)
182 KOG2062 26S proteasome regulat 82.5 11 0.00024 43.8 11.1 87 156-257 565-651 (929)
183 KOG2611 Neurochondrin/leucine- 82.1 18 0.00038 40.1 11.9 128 107-239 16-161 (698)
184 PF06371 Drf_GBD: Diaphanous G 82.0 5.3 0.00011 39.3 7.9 111 101-217 65-186 (187)
185 KOG0414 Chromosome condensatio 81.9 8.2 0.00018 47.2 10.3 142 463-622 919-1066(1251)
186 KOG0414 Chromosome condensatio 81.5 7.5 0.00016 47.6 9.8 130 423-571 920-1056(1251)
187 PF08569 Mo25: Mo25-like; Int 80.5 40 0.00086 36.6 14.2 200 99-306 73-286 (335)
188 PF12460 MMS19_C: RNAPII trans 80.3 1.1E+02 0.0023 34.5 28.5 75 744-820 321-396 (415)
189 PF05918 API5: Apoptosis inhib 80.1 4.1 8.9E-05 46.7 6.9 68 100-174 57-124 (556)
190 KOG2999 Regulator of Rac1, req 79.2 38 0.00081 38.3 13.4 163 148-313 85-254 (713)
191 KOG1078 Vesicle coat complex C 78.8 1.5E+02 0.0033 35.3 27.2 60 790-854 467-528 (865)
192 KOG2025 Chromosome condensatio 78.7 18 0.00039 42.0 11.1 137 118-267 61-198 (892)
193 KOG4464 Signaling protein RIC- 78.7 1.1E+02 0.0023 33.6 16.9 104 115-219 109-232 (532)
194 PF13764 E3_UbLigase_R4: E3 ub 78.7 1.7E+02 0.0036 35.8 21.4 77 182-258 112-199 (802)
195 KOG0915 Uncharacterized conser 78.5 2.1E+02 0.0046 36.9 26.3 170 104-281 1000-1182(1702)
196 PF05918 API5: Apoptosis inhib 78.0 5.9 0.00013 45.5 7.3 67 746-818 59-125 (556)
197 PF12460 MMS19_C: RNAPII trans 77.9 1.3E+02 0.0027 34.0 27.4 360 189-622 1-396 (415)
198 KOG2274 Predicted importin 9 [ 76.1 46 0.001 40.0 13.7 180 117-303 505-689 (1005)
199 KOG2933 Uncharacterized conser 74.6 47 0.001 34.9 11.9 143 103-258 89-233 (334)
200 PF12031 DUF3518: Domain of un 73.6 8.7 0.00019 38.7 6.3 80 118-199 139-228 (257)
201 KOG4653 Uncharacterized conser 73.4 18 0.00039 42.9 9.5 185 104-304 729-919 (982)
202 COG5116 RPN2 26S proteasome re 72.0 20 0.00044 40.4 9.1 97 147-258 552-649 (926)
203 PF07814 WAPL: Wings apart-lik 71.7 80 0.0017 34.8 14.1 93 148-240 23-116 (361)
204 PF12530 DUF3730: Protein of u 70.9 1.3E+02 0.0028 30.8 14.9 140 105-260 3-152 (234)
205 PF06025 DUF913: Domain of Unk 70.0 1.5E+02 0.0032 32.9 15.6 98 145-242 105-208 (379)
206 KOG1820 Microtubule-associated 69.3 1.7E+02 0.0037 35.8 16.8 181 107-303 258-443 (815)
207 KOG1967 DNA repair/transcripti 68.9 19 0.00041 43.1 8.5 148 145-297 866-1018(1030)
208 KOG2274 Predicted importin 9 [ 67.8 2.9E+02 0.0063 33.7 22.5 187 109-303 456-646 (1005)
209 COG5218 YCG1 Chromosome conden 67.5 24 0.00052 40.1 8.5 98 422-527 91-191 (885)
210 PF11865 DUF3385: Domain of un 67.4 32 0.0007 32.9 8.6 141 104-257 12-155 (160)
211 KOG2137 Protein kinase [Signal 66.3 29 0.00062 40.7 9.2 134 144-283 387-520 (700)
212 PF08167 RIX1: rRNA processing 66.2 51 0.0011 31.7 9.9 110 145-258 24-142 (165)
213 PF11707 Npa1: Ribosome 60S bi 64.3 2.2E+02 0.0047 30.9 15.6 166 139-306 51-240 (330)
214 KOG1967 DNA repair/transcripti 62.7 30 0.00064 41.6 8.5 147 422-571 867-1016(1030)
215 PF10363 DUF2435: Protein of u 62.6 16 0.00034 31.3 4.9 84 103-197 4-87 (92)
216 COG5218 YCG1 Chromosome conden 61.1 85 0.0018 35.9 11.2 113 140-266 87-203 (885)
217 PF11707 Npa1: Ribosome 60S bi 60.3 2.5E+02 0.0055 30.4 16.5 155 104-261 58-239 (330)
218 KOG2956 CLIP-associating prote 60.2 2.9E+02 0.0063 31.0 15.3 173 117-302 301-476 (516)
219 PF12830 Nipped-B_C: Sister ch 59.8 1.7E+02 0.0037 28.7 12.5 145 102-260 8-168 (187)
220 KOG0301 Phospholipase A2-activ 59.5 3.5E+02 0.0076 31.8 18.3 130 147-283 590-728 (745)
221 cd03561 VHS VHS domain family; 59.4 1.1E+02 0.0024 28.1 10.4 95 433-535 15-112 (133)
222 PF08167 RIX1: rRNA processing 58.7 38 0.00083 32.5 7.5 106 747-856 26-141 (165)
223 PF10363 DUF2435: Protein of u 58.0 35 0.00075 29.2 6.2 68 424-492 5-72 (92)
224 PF03130 HEAT_PBS: PBS lyase H 57.5 7.8 0.00017 24.5 1.7 27 762-800 1-27 (27)
225 cd03568 VHS_STAM VHS domain fa 56.4 21 0.00045 33.5 5.0 64 792-855 40-107 (144)
226 COG5209 RCD1 Uncharacterized p 54.5 54 0.0012 32.7 7.5 145 164-311 118-276 (315)
227 smart00288 VHS Domain present 53.6 1.4E+02 0.0029 27.6 9.9 73 463-535 37-111 (133)
228 COG5098 Chromosome condensatio 53.6 47 0.001 38.6 7.9 138 466-621 895-1038(1128)
229 KOG2032 Uncharacterized conser 53.2 1E+02 0.0022 34.7 10.1 137 114-254 269-411 (533)
230 cd03567 VHS_GGA VHS domain fam 53.0 27 0.00058 32.5 5.1 65 791-855 40-113 (139)
231 PF14726 RTTN_N: Rotatin, an a 52.9 89 0.0019 27.1 7.8 69 185-255 28-96 (98)
232 COG5098 Chromosome condensatio 51.1 69 0.0015 37.3 8.7 129 424-571 894-1029(1128)
233 smart00567 EZ_HEAT E-Z type HE 51.0 15 0.00032 23.7 2.2 28 761-800 2-29 (30)
234 cd03568 VHS_STAM VHS domain fa 50.9 1.5E+02 0.0032 27.8 9.7 94 433-535 15-110 (144)
235 PF14726 RTTN_N: Rotatin, an a 50.4 1.1E+02 0.0024 26.5 8.0 90 437-528 2-93 (98)
236 PF08324 PUL: PUL domain; Int 49.8 1E+02 0.0022 32.2 9.7 161 465-628 65-239 (268)
237 cd03569 VHS_Hrs_Vps27p VHS dom 49.5 32 0.00069 32.2 5.0 65 791-855 43-111 (142)
238 PF01347 Vitellogenin_N: Lipop 48.6 39 0.00084 40.4 7.1 84 432-533 500-587 (618)
239 PF08324 PUL: PUL domain; Int 47.0 66 0.0014 33.6 7.8 135 115-250 122-265 (268)
240 PF01347 Vitellogenin_N: Lipop 46.9 70 0.0015 38.2 8.9 129 423-571 432-581 (618)
241 KOG3665 ZYG-1-like serine/thre 46.8 1.4E+02 0.003 36.1 11.0 151 169-323 494-674 (699)
242 cd03567 VHS_GGA VHS domain fam 46.7 2.2E+02 0.0047 26.5 10.1 96 432-535 15-116 (139)
243 KOG1248 Uncharacterized conser 46.3 4.3E+02 0.0093 33.3 14.7 184 432-622 664-858 (1176)
244 KOG1820 Microtubule-associated 45.5 1.8E+02 0.0038 35.6 11.6 144 104-257 296-441 (815)
245 KOG2933 Uncharacterized conser 45.5 1.1E+02 0.0024 32.3 8.5 139 423-575 89-231 (334)
246 PF11865 DUF3385: Domain of un 44.9 2.7E+02 0.0059 26.5 10.8 33 463-495 10-43 (160)
247 PF14225 MOR2-PAG1_C: Cell mor 44.5 3.9E+02 0.0084 27.9 12.6 143 455-618 103-252 (262)
248 PF08216 CTNNBL: Catenin-beta- 44.5 28 0.0006 30.6 3.5 43 439-481 63-105 (108)
249 KOG2956 CLIP-associating prote 44.4 5.1E+02 0.011 29.2 14.9 142 464-618 330-475 (516)
250 KOG1788 Uncharacterized conser 43.9 7.5E+02 0.016 31.0 28.7 132 99-241 463-600 (2799)
251 cd03569 VHS_Hrs_Vps27p VHS dom 43.4 2.3E+02 0.005 26.4 9.8 73 462-535 40-114 (142)
252 KOG1243 Protein kinase [Genera 41.0 88 0.0019 36.7 7.7 182 421-619 329-514 (690)
253 KOG4653 Uncharacterized conser 40.6 1.3E+02 0.0028 36.3 8.9 186 424-621 729-919 (982)
254 PF12830 Nipped-B_C: Sister ch 40.2 59 0.0013 32.0 5.7 61 792-856 11-72 (187)
255 smart00638 LPD_N Lipoprotein N 40.0 1.8E+02 0.0039 34.4 10.7 129 423-571 394-537 (574)
256 smart00288 VHS Domain present 39.8 1.3E+02 0.0028 27.7 7.5 72 146-217 37-110 (133)
257 KOG2137 Protein kinase [Signal 39.4 1.7E+02 0.0037 34.6 9.7 134 100-243 387-521 (700)
258 KOG0413 Uncharacterized conser 38.5 1.5E+02 0.0033 36.2 9.1 128 118-260 946-1074(1529)
259 COG5209 RCD1 Uncharacterized p 37.7 2.5E+02 0.0053 28.3 9.1 96 437-534 115-217 (315)
260 smart00638 LPD_N Lipoprotein N 37.7 90 0.002 36.9 7.7 93 423-533 443-543 (574)
261 PF11791 Aconitase_B_N: Aconit 37.4 71 0.0015 29.9 5.1 28 748-775 96-123 (154)
262 cd03561 VHS VHS domain family; 37.3 1.6E+02 0.0034 27.1 7.6 73 231-303 38-112 (133)
263 KOG1991 Nuclear transport rece 36.2 9.4E+02 0.02 29.9 23.8 92 423-515 463-558 (1010)
264 KOG1248 Uncharacterized conser 36.1 4.7E+02 0.01 33.0 13.0 177 431-619 706-897 (1176)
265 PF14663 RasGEF_N_2: Rapamycin 35.1 1.2E+02 0.0025 27.2 6.2 41 145-185 7-47 (115)
266 PF08216 CTNNBL: Catenin-beta- 34.4 55 0.0012 28.8 3.7 43 206-248 63-105 (108)
267 PF14500 MMS19_N: Dos2-interac 33.7 3.4E+02 0.0074 28.3 10.3 143 107-257 4-151 (262)
268 PF07923 N1221: N1221-like pro 32.0 78 0.0017 33.7 5.4 56 744-799 58-126 (293)
269 PF00790 VHS: VHS domain; Int 29.9 96 0.0021 28.8 5.0 73 463-535 42-118 (140)
270 KOG1949 Uncharacterized conser 29.6 5.4E+02 0.012 30.6 11.4 140 427-574 179-327 (1005)
271 KOG1020 Sister chromatid cohes 29.5 4.7E+02 0.01 34.0 11.7 137 146-301 816-958 (1692)
272 KOG1566 Conserved protein Mo25 29.1 6.6E+02 0.014 26.8 11.1 169 457-628 73-249 (342)
273 PF06012 DUF908: Domain of Unk 28.6 2.7E+02 0.0057 30.2 8.9 58 438-495 238-300 (329)
274 PF12463 DUF3689: Protein of u 28.3 7.6E+02 0.016 26.4 13.4 126 180-305 2-175 (303)
275 KOG3665 ZYG-1-like serine/thre 27.7 5.8E+02 0.013 30.9 12.2 163 445-628 494-662 (699)
276 PF11791 Aconitase_B_N: Aconit 25.9 1.1E+02 0.0024 28.6 4.4 27 232-258 96-122 (154)
277 PLN03205 ATR interacting prote 25.8 3.2E+02 0.0069 29.9 8.3 119 416-535 317-446 (652)
278 PF12530 DUF3730: Protein of u 25.7 7.2E+02 0.016 25.3 12.6 137 148-303 2-151 (234)
279 PF00790 VHS: VHS domain; Int 24.9 83 0.0018 29.2 3.6 63 792-854 45-114 (140)
280 PF10521 DUF2454: Protein of u 24.2 4.3E+02 0.0094 27.8 9.3 73 145-217 118-202 (282)
281 PF14663 RasGEF_N_2: Rapamycin 24.2 1.9E+02 0.0041 25.9 5.6 39 423-461 9-47 (115)
282 cd08050 TAF6 TATA Binding Prot 22.9 3.7E+02 0.0081 29.3 8.7 100 427-535 183-297 (343)
283 PF10274 ParcG: Parkin co-regu 22.7 3.2E+02 0.007 26.7 7.2 72 747-819 39-110 (183)
284 PF14666 RICTOR_M: Rapamycin-i 22.5 7.6E+02 0.017 25.1 10.2 129 161-302 79-224 (226)
285 PF04388 Hamartin: Hamartin pr 21.7 1.2E+03 0.026 28.2 13.2 135 100-258 2-139 (668)
286 KOG0301 Phospholipase A2-activ 20.9 7.4E+02 0.016 29.3 10.4 132 104-242 591-728 (745)
287 PF06012 DUF908: Domain of Unk 20.5 4.3E+02 0.0093 28.6 8.6 58 205-262 238-300 (329)
288 PF10274 ParcG: Parkin co-regu 20.5 6.2E+02 0.013 24.8 8.6 32 747-778 81-112 (183)
289 PF10521 DUF2454: Protein of u 20.4 4.1E+02 0.0089 28.0 8.2 70 747-816 120-201 (282)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8.4e-52 Score=505.49 Aligned_cols=684 Identities=18% Similarity=0.153 Sum_probs=512.9
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc---
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN--- 177 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--- 177 (858)
.|++|.|+.+|. +.+..+|.+++.+|.+++.++.+ +..++ ..|++|+|+.+|++++.+.|+.|+++|++|+.+.
T Consensus 57 aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~e~n-k~~Iv-~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D 133 (2102)
T PLN03200 57 SQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKEEDL-RVKVL-LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSD 133 (2102)
T ss_pred cCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCHHH-HHHHH-HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchh
Confidence 899999999997 88889999999999999998765 45666 6999999999999999999999999999999863
Q ss_pred hhHHH-HHhcCcHHHHHHHhcCCCC-CHHHHHHHHHHHHHhccCcchH-HHHHhCCCHHHHHHHHccCCHHHHHHHHHHH
Q 003008 178 VYRDL-VAECGAIEEITGLLTRPSL-TSEVKEQSMCTLWNLSVDKKHR-LKIANTDILPLLIKSLEDENMKVKEAAGGVL 254 (858)
Q Consensus 178 ~~~~~-i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L 254 (858)
.++.. ++..|+||.|+.++++++. +..+++.++.+|+|||.+++++ ..+++.|+++.|+.+|+++++..+..|+++|
T Consensus 134 ~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aL 213 (2102)
T PLN03200 134 HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLL 213 (2102)
T ss_pred hhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35544 5579999999999998731 2346678899999999998886 4567999999999999999999999999999
Q ss_pred HHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCc
Q 003008 255 ANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 255 ~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
.+++.. ++.+..+++.|+||.|+++|++++ .+.+|+.|+++|+|+|. +++++..+++.|+++ +|++++. .+
T Consensus 214 a~Lass~ee~~~aVIeaGaVP~LV~LL~sg~--~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp-~LI~lL~--sp-- 286 (2102)
T PLN03200 214 ARLMMAFESSISKVLDAGAVKQLLKLLGQGN--EVSVRAEAAGALEALSSQSKEAKQAIADAGGIP-ALINATV--AP-- 286 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHccCC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHH-HHHHHHh--Cc--
Confidence 988866 568889999999999999998753 33589999999999999 589999999999999 6999741 10
Q ss_pred cCCCCCCCCCcchhhcc-cCCchhhHHHHHHhccCCCCCCccchHHHHhhhhh-----hhhhhHHHHhhcccccCCCCCC
Q 003008 333 ELHSWPSLPDGTEIERT-SQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVG-----RSRQHFLVRIGAIESEDGRKPQ 406 (858)
Q Consensus 333 ~l~~~~~~~~~~~~~~~-~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~-----~~~~~~L~~~~~~~~~~~~~~~ 406 (858)
. .+.++. .....+..++|+|.|++.+... .+..+.. ++..+.....+.+... ...
T Consensus 287 ---------~-~e~~~~~~~~~Lqe~AvwALsNIcgg~~~------ll~~L~~ll~s~rd~~~~ada~gALayl---l~l 347 (2102)
T PLN03200 287 ---------S-KEFMQGEFAQALQENAMGALANICGGMSA------LILYLGELSESPRSPAPIADTLGALAYA---LMV 347 (2102)
T ss_pred ---------c-hhhhccccchHHHHHHHHHHHHHhCCchh------hHHHHHHhhcccchHHHHHHHHhhHHHH---HHh
Confidence 0 000011 1113356699999999865311 0111100 0000000000000000 000
Q ss_pred CCCCcccccccccccccHHHHHHHhCCCCHHH-HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008 407 SEFPIDRQLTLLPWIDGVARLVLILGLEDERA-IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH 485 (858)
Q Consensus 407 l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v-~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~ 485 (858)
+..+.... ..+....+.+.|+.+++++++.. +..+..+|..+..++..++.+.+.++++.|+.||...+.++|..+++
T Consensus 348 ~d~~~~~~-~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~ 426 (2102)
T PLN03200 348 FDSSAEST-RAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIR 426 (2102)
T ss_pred cCCchhhh-hhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHH
Confidence 00011111 11111236789999999987764 88999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh
Q 003008 486 ALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP 564 (858)
Q Consensus 486 aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~ 564 (858)
+|++|+. +.+.++.+.+.|+++.|+.+|..++ ..+++.++++|++++.. ....+..+.+.|++|+|+++|.+++.
T Consensus 427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s--~~iQ~~A~~~L~nLa~~--ndenr~aIieaGaIP~LV~LL~s~~~ 502 (2102)
T PLN03200 427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSS--EQQQEYAVALLAILTDE--VDESKWAITAAGGIPPLVQLLETGSQ 502 (2102)
T ss_pred HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCC--HHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 9999997 6888999999999999999999554 88999999999999873 22355678899999999999999999
Q ss_pred hHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHh
Q 003008 565 SIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQ 643 (858)
Q Consensus 565 ~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~ 643 (858)
+++.+|+ +|.|++.+.......+.+.|++|+|+++|++++...|..|+++|.++..+.+.... ..++
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I----------~~Lv-- 570 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI----------SQLT-- 570 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH----------HHHH--
Confidence 9999999 99999976544315566889999999999999999999999999999876544311 2222
Q ss_pred hhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhc----ccchHHHHHHHHHHhhccCCCchhhHHHH
Q 003008 644 KALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQ----TINSTHFIKLLRKILKSNVPLHYKDWVAA 719 (858)
Q Consensus 644 ~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 719 (858)
.++...+.. . .....+.+.+++......+ ......++..+..++++. ....+.....
T Consensus 571 ~LLlsdd~~---------~---------~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~ 631 (2102)
T PLN03200 571 ALLLGDLPE---------S---------KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAAS 631 (2102)
T ss_pred HHhcCCChh---------H---------HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHH
Confidence 222222110 0 0000111111211111000 000112223333333322 1122333444
Q ss_pred HHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhh
Q 003008 720 CLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE 799 (858)
Q Consensus 720 ~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~ 799 (858)
++..+.. .+...+..+.+.|+++|++.+|++++.++++.|++||.||+.....++...+++.|+|++|+++|.
T Consensus 632 iLsnL~a-------~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~ 704 (2102)
T PLN03200 632 VLADIFS-------SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAK 704 (2102)
T ss_pred HHHHHhc-------CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHh
Confidence 5555443 112334446689999999999999999999999999999998665545568899999999999999
Q ss_pred cCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 800 EGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 800 ~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
+++.+++..|+.+|.|++.+++.+..+.+.|+++.|+++++++++.. +.|.++|.+|
T Consensus 705 ~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 705 SSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred CCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 8888888665
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.7e-49 Score=481.50 Aligned_cols=633 Identities=18% Similarity=0.170 Sum_probs=480.9
Q ss_pred ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCC--cccHHHHHHhcCcHHHHHHHHccCC---HHHHHHHHHHHHH
Q 003008 98 TFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGG--KKCIDYIMQFSGCINLTVNLLRSES---SAACEAAAGLLRS 172 (858)
Q Consensus 98 ~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~--~~~~~~ii~~~g~i~~Li~lL~~~~---~~~~~~a~~aL~n 172 (858)
+...|++|.|+.+|+ +.+++.|..|+++|.+++.+. ++.+..++...|++|.|+.++++++ ..+++.++.+|+|
T Consensus 95 Iv~~GaIppLV~LL~-sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 95 VLLGGCIPPLLSLLK-SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred HHHcCChHHHHHHHH-CCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 446899999999998 778899999999999999875 4333355657999999999999874 3456778999999
Q ss_pred hhcCchhH-HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccC-CHHHHHH
Q 003008 173 ISSINVYR-DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDE-NMKVKEA 249 (858)
Q Consensus 173 Ls~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~ 249 (858)
|+...+++ ..+++.|++|.++.+|+++ ++..++.|+++|.+++.+ ++.+..+++.|+||.|+++|+++ ++.++++
T Consensus 174 Ls~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 174 LCGSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HhcCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence 99988765 5678999999999999997 999999999999998865 56899999999999999999875 5689999
Q ss_pred HHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCC------CCHHHHHHHHHHHHHHhcCh-h-------------hH
Q 003008 250 AGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVE------GSKVIRKEARNALIELAKDD-Y-------------YR 308 (858)
Q Consensus 250 a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~------~~~~~~~~a~~aL~nl~~~~-~-------------~~ 308 (858)
|+|+|.||+.. ++.+..+++.|+++.|++++.+.+. ....++++|.++|.|+|.+- . ..
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~ 331 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSP 331 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchH
Confidence 99999999986 6788899999999999999975331 12346899999999999852 1 11
Q ss_pred HHH-HHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchh----hHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008 309 ILI-IEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSK----FGANELLLGLNVSDKNANIDEAKMNAMV 383 (858)
Q Consensus 309 ~~i-~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~a~~aL~nL~~~~~~~~i~~~~~~~li 383 (858)
..+ ...|++. +++.++. .+....+ ..+.|+|.+|..+.+...+.+...+++-
T Consensus 332 ~~~ada~gALa-yll~l~d----------------------~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa 388 (2102)
T PLN03200 332 APIADTLGALA-YALMVFD----------------------SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA 388 (2102)
T ss_pred HHHHHHHhhHH-HHHHhcC----------------------CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH
Confidence 111 2245555 3444310 0000111 1256778888765532222333333321
Q ss_pred hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHc
Q 003008 384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEA 462 (858)
Q Consensus 384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~ 462 (858)
. + . +++... +.+...++++.||.||...+.++|.+++++|++++ ++++.++.+.+.
T Consensus 389 s------l--~--------------gN~~l~-~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 389 S------L--Y--------------GNAYLS-RKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred H------h--c--------------CChHHH-HHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 1 0 0 111111 23334568999999999999999999999999977 668889999999
Q ss_pred CcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc
Q 003008 463 GAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK 541 (858)
Q Consensus 463 g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 541 (858)
|+++.|+.+|.+++..+|+.++++|+|++. +++++..+.++|+||+|+.+|..++ ..+++.|+|+|+|++.. +..
T Consensus 446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~--~~iqeeAawAL~NLa~~--~~q 521 (2102)
T PLN03200 446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS--QKAKEDSATVLWNLCCH--SED 521 (2102)
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHhCC--cHH
Confidence 999999999999999999999999999997 7788999999999999999998554 89999999999999972 222
Q ss_pred cccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc-------------------------------------h
Q 003008 542 SKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT-------------------------------------S 583 (858)
Q Consensus 542 ~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~-------------------------------------~ 583 (858)
.+..+...|++++|+++|.+.+++.+..++ +|+++....+. +
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 333455789999999999999999999999 99988532111 0
Q ss_pred hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch-HHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccc
Q 003008 584 YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM-DTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYA 662 (858)
Q Consensus 584 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~ 662 (858)
.+.+...|+++.|+++|++++..+++.|+++|.++..+.... ..+ ...+++..++
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~av---v~agaIpPLV--------------------- 657 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESL---ATDEIINPCI--------------------- 657 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHH---HHcCCHHHHH---------------------
Confidence 011224689999999999999999999999999998866543 333 1223333333
Q ss_pred hhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhh
Q 003008 663 LDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEV 742 (858)
Q Consensus 663 l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i 742 (858)
.++....... +.+...+|..+..... ......+
T Consensus 658 ------------------~LLss~~~~v-----------------------~keAA~AL~nL~~~~~------~~q~~~~ 690 (2102)
T PLN03200 658 ------------------KLLTNNTEAV-----------------------ATQSARALAALSRSIK------ENRKVSY 690 (2102)
T ss_pred ------------------HHHhcCChHH-----------------------HHHHHHHHHHHHhCCC------HHHHHHH
Confidence 3333222111 1112222222221000 1111224
Q ss_pred hhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc-
Q 003008 743 TLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE- 821 (858)
Q Consensus 743 ~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~- 821 (858)
...|++++|+++|++.+.++++.|+.||.|++... +....+.+.|+|++|+++|+++++++|+.|+++|.+|....+
T Consensus 691 v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~ 768 (2102)
T PLN03200 691 AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPV 768 (2102)
T ss_pred HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCCh
Confidence 57899999999999999999999999999998655 356688899999999999999999999999999999987643
Q ss_pred ---chHHHHHcCchHHHHHhhhcCChhH---HHHHHHHhcC
Q 003008 822 ---NHSAIIAAGAVPALRRIVLSQRPQW---TRALRLLRNL 856 (858)
Q Consensus 822 ---~~~~i~~~g~v~~L~~ll~~~~~~~---~~al~~l~~l 856 (858)
....+...|++.+|+.++.+.|.+. ..|++.|..+
T Consensus 769 ~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l 809 (2102)
T PLN03200 769 DDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALL 809 (2102)
T ss_pred hHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 5567889999999999999999988 4588877655
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-34 Score=286.41 Aligned_cols=403 Identities=17% Similarity=0.224 Sum_probs=347.8
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY 179 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~ 179 (858)
.......+.-+++ +.|+.++..+..+++|++-+.+++ ..+.+.+++..|+.-+..+..+++.++++++.||+..+++
T Consensus 83 sres~epvl~llq-s~d~~Iq~aa~~alGnlAVn~enk--~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~n 159 (550)
T KOG4224|consen 83 SRESNEPVLALLQ-SCDKCIQCAAGEALGNLAVNMENK--GLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSN 159 (550)
T ss_pred hhhhhhHHHHHHh-CcchhhhhhhhhhhccceeccCCc--eEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccc
Confidence 3445566788887 899999999999999999988875 3444899999999988888889999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
|..|...|++.++.++-++. +..+++++..+|.|+....++|..++..|++|.|+.++++++++++.+|+.++.|++.
T Consensus 160 k~kiA~sGaL~pltrLaksk--dirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSK--DIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred hhhhhhccchhhhHhhcccc--hhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 99999999999999988887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHhCC--CHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008 260 SKSNHNILVEAG--VIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW 337 (858)
Q Consensus 260 ~~~~~~~i~~~g--~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~ 337 (858)
+...|..+.+.+ .++.||++++.+ +++++..|..+|.|++.+++++..++++|++|. +++++
T Consensus 238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~---s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~-lv~Ll------------ 301 (550)
T KOG4224|consen 238 DRRARKILAQAEPKLVPALVDLMDDG---SDKVKCQAGLALRNLASDTEYQREIVEAGSLPL-LVELL------------ 301 (550)
T ss_pred hHHHHHHHHhcccchHHHHHHHHhCC---ChHHHHHHHHHHhhhcccchhhhHHHhcCCchH-HHHHH------------
Confidence 999999999988 899999999887 455899999999999999999999999999995 99863
Q ss_pred CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008 338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL 417 (858)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (858)
+.+..+.....+.+++|++.+
T Consensus 302 ----------qs~~~plilasVaCIrnisih------------------------------------------------- 322 (550)
T KOG4224|consen 302 ----------QSPMGPLILASVACIRNISIH------------------------------------------------- 322 (550)
T ss_pred ----------hCcchhHHHHHHHHHhhcccc-------------------------------------------------
Confidence 221112233333444444433
Q ss_pred ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-HHHHHHHHHHHHHhhc-Chh
Q 003008 418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-DAVRLATTHALERLSV-SRG 495 (858)
Q Consensus 418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-~~v~~~a~~aL~~Ls~-~~~ 495 (858)
+-+...++++|.+.+|+.+|+.++ .+++..|...|+||+. ++.
T Consensus 323 -----------------------------------plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~ 367 (550)
T KOG4224|consen 323 -----------------------------------PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH 367 (550)
T ss_pred -----------------------------------cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh
Confidence 334444567999999999999776 7799999999999998 788
Q ss_pred HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008 496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE 574 (858)
Q Consensus 496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~ 574 (858)
++..+.++|+||.++.++.+.. .++|.....|++.|+. ....|..+.+.|.++.|+..+.+.+.+++-|+. ++.
T Consensus 368 n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal---~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~ 442 (550)
T KOG4224|consen 368 NVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLAL---NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALI 442 (550)
T ss_pred hhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHh---ccccHHHHhhcCCcceeecccCccchhhcccHHHHHH
Confidence 8999999999999999999555 8999999999999988 555677888999999999999999999999999 999
Q ss_pred HhhccccchhhhHhhc------cchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 575 AAVSETTTSYGKVLDS------VFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 575 ~L~~~~~~~~~~i~~~------g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
|++++.+.. ..++++ |.-..|++++.|++..++.-+.|++..|..+.+
T Consensus 443 Nlss~v~~Y-arviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 443 NLSSDVEHY-ARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hhhhhhHHH-HHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 999877665 556553 334479999999999999999999999987544
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-32 Score=272.82 Aligned_cols=371 Identities=19% Similarity=0.205 Sum_probs=329.7
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223 (858)
Q Consensus 144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~ 223 (858)
......++..++++.++.++..+..+++|++.+.+++..|++.+++.+|+.-+.++ ..+++..++.+++||+..+++|
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd--~vevqcnaVgCitnLaT~d~nk 160 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD--GVEVQCNAVGCITNLATFDSNK 160 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--CcEEEeeehhhhhhhhccccch
Confidence 45677888899999999999999999999999999999999999999988877776 7889999999999999889999
Q ss_pred HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
..+...|++.+|+++-++.+..++.++.++|.|++...++|..++.+|++|.||+++++++. .+|..+..++.|++.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~---dvqyycttaisnIaV 237 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDL---DVQYYCTTAISNIAV 237 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCCh---hHHHHHHHHhhhhhh
Confidence 99999999999999889999999999999999999999999999999999999999998743 388999999999998
Q ss_pred ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008 304 DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMV 383 (858)
Q Consensus 304 ~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li 383 (858)
+..+|+.+++.| |
T Consensus 238 d~~~Rk~Laqae--p----------------------------------------------------------------- 250 (550)
T KOG4224|consen 238 DRRARKILAQAE--P----------------------------------------------------------------- 250 (550)
T ss_pred hHHHHHHHHhcc--c-----------------------------------------------------------------
Confidence 877776665554 0
Q ss_pred hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcC
Q 003008 384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAG 463 (858)
Q Consensus 384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g 463 (858)
..++.|+.+..+++++++..|..+|.+++...+++..++++|
T Consensus 251 --------------------------------------~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag 292 (550)
T KOG4224|consen 251 --------------------------------------KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG 292 (550)
T ss_pred --------------------------------------chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC
Confidence 034556667777888899999999999999999999999999
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccc
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSK 543 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 543 (858)
++|.|+.||+++.-......+.++.|++-++-+...+.++|.+.+|+.+|.. .+++++|.+|..+|+||+.. ...++
T Consensus 293 ~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAas--se~n~ 369 (550)
T KOG4224|consen 293 SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAAS--SEHNV 369 (550)
T ss_pred CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhh--hhhhh
Confidence 9999999999988777888899999999999999999999999999999984 44578999999999999973 34566
Q ss_pred cccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 544 FYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 544 ~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
..|.++|+++.++.++.+...+++.... |+..|+..+..+ ..+.+.|.+|.|+..+.+.+.+++-.++.+|.|++.+.
T Consensus 370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k-~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDK-EALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccH-HHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 7899999999999999998888888777 888888777777 99999999999999999999999999999999998766
Q ss_pred cchHHH
Q 003008 623 PSMDTI 628 (858)
Q Consensus 623 ~~~~~~ 628 (858)
++-..+
T Consensus 449 ~~Yarv 454 (550)
T KOG4224|consen 449 EHYARV 454 (550)
T ss_pred HHHHHH
Confidence 655444
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-30 Score=281.49 Aligned_cols=381 Identities=22% Similarity=0.279 Sum_probs=308.2
Q ss_pred CCcccccCCCcccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHH
Q 003008 87 VDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAA 166 (858)
Q Consensus 87 ~~~~~~~~~~~~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a 166 (858)
|+++... ..|.+|.||..|+...++.+|..|+|+|.|+|+++..+.+.++ +.|++|.++.++.+++..++++|
T Consensus 100 ppi~~vi------~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv-~agavp~fi~Ll~s~~~~v~eQa 172 (514)
T KOG0166|consen 100 PPIDEVI------QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV-DAGAVPIFIQLLSSPSADVREQA 172 (514)
T ss_pred CCHHHHH------HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc-cCCchHHHHHHhcCCcHHHHHHH
Confidence 5555543 3699999999997466689999999999999999888754555 89999999999999999999999
Q ss_pred HHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCH-HHHHHHHHHHHHhccCcchHHH-HHhCCCHHHHHHHHccCC
Q 003008 167 AGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTS-EVKEQSMCTLWNLSVDKKHRLK-IANTDILPLLIKSLEDEN 243 (858)
Q Consensus 167 ~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~a~~~L~nLs~~~~~~~~-i~~~g~i~~Lv~ll~~~~ 243 (858)
+|+|+|++.+. .+|+.+.+.|++++|+.++... ++ ...+.++|+|.|||.+...... -.-..++|.|..++++.|
T Consensus 173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~--~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D 250 (514)
T KOG0166|consen 173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS--DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD 250 (514)
T ss_pred HHHHhccccCChHHHHHHHhhcchHHHHHHhccc--cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC
Confidence 99999999876 6999999999999999999987 44 7889999999999987644333 234678999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCccccc
Q 003008 244 MKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPM 321 (858)
Q Consensus 244 ~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~L 321 (858)
+++...|+|+|++|+.++..+. .+++.|+++.||++|.+.+. .++..|++++.|++. ++...+.+++.|+++. |
T Consensus 251 ~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~---~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~-l 326 (514)
T KOG0166|consen 251 EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP---KVVTPALRAIGNIVTGSDEQTQVVINSGALPV-L 326 (514)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc---ccccHHHhhccceeeccHHHHHHHHhcChHHH-H
Confidence 9999999999999998865555 77999999999999987543 366788888888877 4555566677776663 4
Q ss_pred ccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccC
Q 003008 322 VGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESED 401 (858)
Q Consensus 322 v~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~ 401 (858)
..
T Consensus 327 ~~------------------------------------------------------------------------------ 328 (514)
T KOG0166|consen 327 SN------------------------------------------------------------------------------ 328 (514)
T ss_pred HH------------------------------------------------------------------------------
Confidence 33
Q ss_pred CCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHH
Q 003008 402 GRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAV 479 (858)
Q Consensus 402 ~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v 479 (858)
++. ++...++.+|||++.| .+++.+..++++++|.+|.|+.+|++.+.++
T Consensus 329 ----------------------------ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 329 ----------------------------LLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDI 380 (514)
T ss_pred ----------------------------HhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHH
Confidence 222 3344588899999999 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHH
Q 003008 480 RLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLD 557 (858)
Q Consensus 480 ~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ 557 (858)
|..|+||+.|++. .++.-..+++.|.|+++.++|...+ ..+...+..+|.++...+......
T Consensus 381 rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D--~~ii~v~Ld~l~nil~~~e~~~~~-------------- 444 (514)
T KOG0166|consen 381 RKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPD--VKIILVALDGLENILKVGEAEKNR-------------- 444 (514)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCC--hHHHHHHHHHHHHHHHHHHHhccc--------------
Confidence 9999999999987 6777889999999999999997555 555667777777776522111000
Q ss_pred hhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 558 AAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 558 ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
...... ..|.+.||+..+-.|-.+++.+|-..|..++......++
T Consensus 445 --------------------~~n~~~-~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~ 489 (514)
T KOG0166|consen 445 --------------------GTNPLA-IMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED 489 (514)
T ss_pred --------------------cccHHH-HHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence 000111 567788999999888899999999999999988766543
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=8.9e-31 Score=260.08 Aligned_cols=388 Identities=20% Similarity=0.239 Sum_probs=299.3
Q ss_pred cCCCCCcccccCCCcccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHH
Q 003008 83 QSSSVDIKEISGSSSTFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAA 162 (858)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~ 162 (858)
..+.|+++.+ .+.|.+|.|++++......-.+..|+|+|.|++++...+. +++.++|++|.++++|.+++.++
T Consensus 101 ~E~~PPIq~V------IdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kvVvd~~AVPlfiqlL~s~~~~V 173 (526)
T COG5064 101 KETSPPIQPV------IDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KVVVDAGAVPLFIQLLSSTEDDV 173 (526)
T ss_pred cccCCCchhH------HhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EEEEeCCchHHHHHHHcCchHHH
Confidence 3445666555 4699999999999524333568899999999999998875 55669999999999999999999
Q ss_pred HHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc---hHHHHHhCCCHHHHHHH
Q 003008 163 CEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK---HRLKIANTDILPLLIKS 238 (858)
Q Consensus 163 ~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~---~~~~i~~~g~i~~Lv~l 238 (858)
+++++|+|+|++.+. .+|+.+.+.|++++++.++.+..-+..+.+.+.|+|.|||.... .-..+ ...+|.|.++
T Consensus 174 ~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KL 251 (526)
T COG5064 174 REQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKL 251 (526)
T ss_pred HHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHH
Confidence 999999999999976 59999999999999999888762245889999999999996532 23333 3368999999
Q ss_pred HccCCHHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCC
Q 003008 239 LEDENMKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGL 316 (858)
Q Consensus 239 l~~~~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~ 316 (858)
+.+.++++...|+|++..|+..+..+. ++++.|..+.||++|.+++.. ++..+++.+.|+... +...
T Consensus 252 iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~---iqtPalR~vGNIVTG~D~QT-------- 320 (526)
T COG5064 252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAK---IQTPALRSVGNIVTGSDDQT-------- 320 (526)
T ss_pred HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccc---ccCHHHHhhcCeeecCccce--------
Confidence 999999999999999999999876555 789999999999999876322 455555554444432 1111
Q ss_pred cccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhc
Q 003008 317 VPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGA 396 (858)
Q Consensus 317 v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~ 396 (858)
T Consensus 321 -------------------------------------------------------------------------------- 320 (526)
T COG5064 321 -------------------------------------------------------------------------------- 320 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCC
Q 003008 397 IESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHS 475 (858)
Q Consensus 397 ~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~ 475 (858)
+.+..-|+++.+..+|+++.+.++..+||++.| .+++.+..+++++.+.+|+|+++|++.
T Consensus 321 -------------------qviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a 381 (526)
T COG5064 321 -------------------QVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA 381 (526)
T ss_pred -------------------ehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH
Confidence 122222355556667788888899999999999 568999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhc----ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC
Q 003008 476 SDAVRLATTHALERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG 551 (858)
Q Consensus 476 ~~~v~~~a~~aL~~Ls~----~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~ 551 (858)
+-.++..|+||+.|.++ -|+.-+.++..|.|.+|-++|.-.+ ..+-+-+..++.|+...|+....
T Consensus 382 e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~d--Nkiiev~LD~~eniLk~Ge~d~~--------- 450 (526)
T COG5064 382 EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVD--NKIIEVALDAIENILKVGEQDRL--------- 450 (526)
T ss_pred HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccC--ccchhhhHHHHHHHHhhhhHHHH---------
Confidence 99999999999999987 3677788899999999999998544 34455567777777763321110
Q ss_pred cHHHHHhhcCCChhHHHHHHHHHHhhccccchhhh-HhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 552 SEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGK-VLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 552 i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~-i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
..- ...+.+.. +.++|++..+-.+-.+.+.++-.+|-.++.......+.
T Consensus 451 -------~~~-----------------~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 451 -------RYG-----------------KNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred -------hcc-----------------CCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 000 00111133 44589999999999999999999999888777654433
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.97 E-value=8.2e-31 Score=260.32 Aligned_cols=367 Identities=20% Similarity=0.233 Sum_probs=290.1
Q ss_pred ccccccccHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-
Q 003008 416 TLLPWIDGVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV- 492 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~- 492 (858)
+.+...|++|.+++++ +....-.+-.|+|+|.|++ ++....+.++++|++|.+++||.+++.+|+++++|||+|++.
T Consensus 108 q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD 187 (526)
T COG5064 108 QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD 187 (526)
T ss_pred hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence 5566778999999999 4555667789999999955 666666777899999999999999999999999999999999
Q ss_pred ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-
Q 003008 493 SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN- 571 (858)
Q Consensus 493 ~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~- 571 (858)
++.+|..+.+.|++.+++.++.++..+..+.+.++|+|+||+. |+.+...+..+ ...+|.|.+|+.+.|+++...|+
T Consensus 188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR-GknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~W 265 (526)
T COG5064 188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR-GKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACW 265 (526)
T ss_pred chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC-CCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7889999999999999999998666557888999999999998 33443332211 34689999999999999999999
Q ss_pred HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCC
Q 003008 572 VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDS 651 (858)
Q Consensus 572 ~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~ 651 (858)
++.+|+......++.+++.|..+.|+++|.+++..+|..|++.++|+..+++....++ +
T Consensus 266 AiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi-----------I---------- 324 (526)
T COG5064 266 AISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI-----------I---------- 324 (526)
T ss_pred HHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh-----------e----------
Confidence 9999998777666899999999999999999999999999999999999887766541 1
Q ss_pred CcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCC
Q 003008 652 DIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPD 731 (858)
Q Consensus 652 ~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 731 (858)
..|....+..|++..+. .+....|+.. +++..+..
T Consensus 325 --------------------~~G~L~a~~~lLs~~ke--~irKEaCWTi------SNITAGnt----------------- 359 (526)
T COG5064 325 --------------------NCGALKAFRSLLSSPKE--NIRKEACWTI------SNITAGNT----------------- 359 (526)
T ss_pred --------------------ecccHHHHHHHhcChhh--hhhhhhheee------cccccCCH-----------------
Confidence 11222233334443322 1222223221 23322222
Q ss_pred CCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcC--cchhhHHHHhcCCchHHHHHhhcCChHHHHHH
Q 003008 732 QDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEG--VVDSTRAVASEGGIFPLVKLIEEGSNRAVEAG 809 (858)
Q Consensus 732 ~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a 809 (858)
+.++ .+.+++.+|+|+.+|.+.+..+++.||||+.|.++++ .+|..+++++.|.|.||+.+|.-.+.++-+.+
T Consensus 360 ----eqiq-avid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 360 ----EQIQ-AVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred ----HHHH-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 2222 2448889999999999999999999999999998864 35788899999999999999998888888888
Q ss_pred HHHHHhhhcCcc-----------chHHHH-HcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008 810 LAILYNLSMDSE-----------NHSAII-AAGAVPALRRIVLSQRPQW-TRALRLLRN 855 (858)
Q Consensus 810 ~~aL~nL~~~~~-----------~~~~i~-~~g~v~~L~~ll~~~~~~~-~~al~~l~~ 855 (858)
+.++.|+....+ ....++ ++|.+..+..+..+.+... ++|+..+.+
T Consensus 435 LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~ 493 (526)
T COG5064 435 LDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEK 493 (526)
T ss_pred HHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHH
Confidence 999988864322 123444 5999999999999999988 999987754
No 8
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.5e-30 Score=274.99 Aligned_cols=364 Identities=19% Similarity=0.216 Sum_probs=292.2
Q ss_pred cccccHHHHHHHhC-CCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Chh
Q 003008 419 PWIDGVARLVLILG-LEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRG 495 (858)
Q Consensus 419 ~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~ 495 (858)
.+.|.++.+|..|. ..++.++..|+|+|.| .+++.+..+.++++|+++.++.|+.+++.+|+++|+|||+|++. ++.
T Consensus 106 i~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~ 185 (514)
T KOG0166|consen 106 IQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPD 185 (514)
T ss_pred HHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChH
Confidence 33479999999997 4569999999999999 55788889999999999999999999999999999999999999 799
Q ss_pred HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008 496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE 574 (858)
Q Consensus 496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~ 574 (858)
+|..+.+.|++++|+.++..+. .....+.++|+|+|||... ++.... -.-...+|.|..++.+.|+++...++ ++.
T Consensus 186 ~Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsNlcrgk-~P~P~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 186 CRDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSNLCRGK-NPSPPF-DVVAPILPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred HHHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHHHHcCC-CCCCcH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999998443 3578889999999999843 222211 11235688999999999999999999 999
Q ss_pred HhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcC
Q 003008 575 AAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIE 654 (858)
Q Consensus 575 ~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~ 654 (858)
+|.......++.+++.|.+|.|+++|.+....++..|+++++|++.+++.....+-
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi------------------------ 318 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI------------------------ 318 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH------------------------
Confidence 99977766668999999999999999999999999999999999998887766521
Q ss_pred CCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCC
Q 003008 655 GRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDF 734 (858)
Q Consensus 655 ~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 734 (858)
..+..+.+..++.-.. ...+....|+.. +++..+..
T Consensus 319 -----------------~~~~L~~l~~ll~~s~-~~~ikkEAcW~i------SNItAG~~-------------------- 354 (514)
T KOG0166|consen 319 -----------------NSGALPVLSNLLSSSP-KESIKKEACWTI------SNITAGNQ-------------------- 354 (514)
T ss_pred -----------------hcChHHHHHHHhccCc-chhHHHHHHHHH------HHhhcCCH--------------------
Confidence 1112223333332100 011222233322 22222222
Q ss_pred CccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHH
Q 003008 735 ENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILY 814 (858)
Q Consensus 735 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 814 (858)
..++ .+.++|.+|.|+++|.+++..+|++|+||++|++.++..++..++++.|.|++++.+|.-.+.+....++.+|.
T Consensus 355 -~qiq-aVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 355 -EQIQ-AVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred -HHHH-HHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHH
Confidence 2222 24588999999999999999999999999999999999889999999999999999998888889899999999
Q ss_pred hhhcCc---------cchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008 815 NLSMDS---------ENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN 855 (858)
Q Consensus 815 nL~~~~---------~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~ 855 (858)
||.... .....|.++|.+..+..|..+++.+. ++|+..+.+
T Consensus 433 nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 433 NILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDT 483 (514)
T ss_pred HHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHH
Confidence 996432 23346889999999999999999888 999988764
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=7.8e-24 Score=242.16 Aligned_cols=394 Identities=19% Similarity=0.270 Sum_probs=314.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 003008 106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE 185 (858)
Q Consensus 106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~ 185 (858)
++-.++. ..+ .....+...|.|++.+.... ..|.+.|+++.|+++|.+++.+....++..|.+||...+|+..|.+
T Consensus 254 k~~~l~~-kQe-qLlrv~~~lLlNLAed~~ve--~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~ 329 (708)
T PF05804_consen 254 KLQTLIR-KQE-QLLRVAFYLLLNLAEDPRVE--LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE 329 (708)
T ss_pred HHHHHHH-HHH-HHHHHHHHHHHHHhcChHHH--HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444444 333 34446778899999988764 4455899999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchH
Q 003008 186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN 265 (858)
Q Consensus 186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~ 265 (858)
.|+|++|++++.++ +...+..++++|+|||++++.|..+++.|++|.|+.+|.++ ..+..++.+|++|+.++++|.
T Consensus 330 ~giV~kL~kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~ 405 (708)
T PF05804_consen 330 SGIVEKLLKLLPSE--NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARS 405 (708)
T ss_pred cCCHHHHHHHhcCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHH
Confidence 99999999999998 89999999999999999999999999999999999999865 466789999999999999999
Q ss_pred HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcch
Q 003008 266 ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE 345 (858)
Q Consensus 266 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~ 345 (858)
.+...+++|.+++++-.+++ +.+...+...+.||+.++.|.+.+++.|+++. |++.+
T Consensus 406 ~f~~TdcIp~L~~~Ll~~~~--~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~-L~~ra-------------------- 462 (708)
T PF05804_consen 406 MFAYTDCIPQLMQMLLENSE--EEVQLELIALLINLALNKRNAQLMCEGNGLQS-LMKRA-------------------- 462 (708)
T ss_pred HHhhcchHHHHHHHHHhCCC--ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHH-HHHHH--------------------
Confidence 99999999999997655432 22555778899999999999999999999994 88852
Q ss_pred hhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008 346 IERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA 425 (858)
Q Consensus 346 ~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~ 425 (858)
++..+ .-....++|++.++..- +..+ .+.+.
T Consensus 463 -~~~~D----~lLlKlIRNiS~h~~~~---k~~f-----------------------------------------~~~i~ 493 (708)
T PF05804_consen 463 -LKTRD----PLLLKLIRNISQHDGPL---KELF-----------------------------------------VDFIG 493 (708)
T ss_pred -Hhccc----HHHHHHHHHHHhcCchH---HHHH-----------------------------------------HHHHH
Confidence 12111 11345678887765210 0000 12455
Q ss_pred HHHHHhCC-CCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 426 RLVLILGL-EDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 426 ~Lv~lL~~-~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
.|+..+.. ++++....+.++|+|+.. +.+....+.+.+.+|.|.++|..+ .+++...++..++.++.++.+...+.
T Consensus 494 ~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~ 573 (708)
T PF05804_consen 494 DLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLA 573 (708)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 56666654 467889999999999774 445555566789999999999765 37899999999999999999999999
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhcccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETT 581 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~ 581 (858)
+.|.++.|+.+|+...+|+++.-....++..+.. +..
T Consensus 574 ~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~-------------------------------------------h~~ 610 (708)
T PF05804_consen 574 KSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF-------------------------------------------HEE 610 (708)
T ss_pred hCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc-------------------------------------------ChH
Confidence 9999999999999777677666666665555554 444
Q ss_pred chhhhH-hhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 582 TSYGKV-LDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 582 ~~~~~i-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+| ..+ .+.+.+..|+.++.+.|++|++.|-.+|.-++..++
T Consensus 611 tr-~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 611 TR-EVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HH-HHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 55 444 346777889999999999999999999888876554
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=1.6e-21 Score=223.28 Aligned_cols=346 Identities=18% Similarity=0.187 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc
Q 003008 161 AACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE 240 (858)
Q Consensus 161 ~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~ 240 (858)
.....+...|.||+.+..+...+...|+|+.|+++|.+. +.++...+++.|.+||..++||..+.+.|++++|++++.
T Consensus 264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~--n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE--NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 344467888999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008 241 DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVP 320 (858)
Q Consensus 241 ~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~ 320 (858)
+++.+++..++++|.||+.+++.|..+++.|++|.|+.+|..++ .+..+..+|+|+|.++++|..+...++++.
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~TdcIp~- 415 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN-----FREVALKILYNLSMDDEARSMFAYTDCIPQ- 415 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhhcchHHH-
Confidence 99999999999999999999999999999999999999997532 566899999999999998888877787773
Q ss_pred cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008 321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE 400 (858)
Q Consensus 321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~ 400 (858)
+++++
T Consensus 416 L~~~L--------------------------------------------------------------------------- 420 (708)
T PF05804_consen 416 LMQML--------------------------------------------------------------------------- 420 (708)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 66542
Q ss_pred CCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHH
Q 003008 401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480 (858)
Q Consensus 401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~ 480 (858)
+..+++.+...+...+.|++.++++.+.+.+.|+++.|+...-...+.+
T Consensus 421 ------------------------------l~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l- 469 (708)
T PF05804_consen 421 ------------------------------LENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL- 469 (708)
T ss_pred ------------------------------HhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH-
Confidence 0111222333456677788888888888888899999998764433322
Q ss_pred HHHHHHHHHhhcCh-hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhh
Q 003008 481 LATTHALERLSVSR-GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAA 559 (858)
Q Consensus 481 ~~a~~aL~~Ls~~~-~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll 559 (858)
....+.|++.++ ..+..+. +.|..|+.++...+ +++....+.++|+||..++. .....+.+.+.+|++.++|
T Consensus 470 --LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~~~~l--d~~~ll~~~~llp~L~~~L 542 (708)
T PF05804_consen 470 --LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGD-SEEFVVECLGILANLTIPDL--DWAQLLQEYNLLPWLKDLL 542 (708)
T ss_pred --HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCC-cHHHHHHHHHHHHhcccCCc--CHHHHHHhCCHHHHHHHHh
Confidence 335899999965 5566554 47888889887544 67888999999999987543 3333344568899999999
Q ss_pred cCC--ChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcC--CCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 560 ESL--DPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKT--SYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 560 ~s~--d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
... ++++...++ .+..++.+.... ..+.+.|.++.|+.+|++ +|.++..+.+.+++++..+++.+..+
T Consensus 543 ~~g~~~dDl~LE~Vi~~gtla~d~~~A-~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~l 615 (708)
T PF05804_consen 543 KPGASEDDLLLEVVILLGTLASDPECA-PLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVL 615 (708)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCHHHH-HHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHH
Confidence 753 457888888 778888888877 888899999999999975 56678888888888877766665544
No 11
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.86 E-value=1.4e-20 Score=215.96 Aligned_cols=350 Identities=19% Similarity=0.237 Sum_probs=258.7
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhhcCc-h---
Q 003008 106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE---SSAACEAAAGLLRSISSIN-V--- 178 (858)
Q Consensus 106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~---~~~~~~~a~~aL~nLs~~~-~--- 178 (858)
.++.+|. +.| ++...+.++.++.+.+.| .+|+..|+++.|+++|.-. +.+.+..|-.+|+||.++. +
T Consensus 201 sllsml~-t~D---~ee~ar~fLemSss~esC--aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr 274 (2195)
T KOG2122|consen 201 SLLSMLG-TDD---EEEMARTFLEMSSSPESC--AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR 274 (2195)
T ss_pred HHhhhcc-cCC---HHHHHHHHHHhccCchhh--HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence 5667776 656 777788999999999998 5788899999999999654 5678888999999997643 3
Q ss_pred hHHHHHhcCcHHHHHH-------HhcCC-C----CCHHHHH-HHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC---
Q 003008 179 YRDLVAECGAIEEITG-------LLTRP-S----LTSEVKE-QSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--- 242 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~-------lL~~~-~----~~~~~~~-~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--- 242 (858)
.|+.+.-..++..+.. ++... + ...+-+. .|+.+|..+++++++|..+.+.|++.++.+|+...
T Consensus 275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~m 354 (2195)
T KOG2122|consen 275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEM 354 (2195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444433333332222 22221 1 1122333 78899999999999999999999999999987532
Q ss_pred ---------CHHHHHHHHHHHHHHcCCcC-chHHH-HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC--hhhHH
Q 003008 243 ---------NMKVKEAAGGVLANLALSKS-NHNIL-VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD--DYYRI 309 (858)
Q Consensus 243 ---------~~~~~~~a~~~L~nL~~~~~-~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~--~~~~~ 309 (858)
...++.++..+|.||++++. +|..+ ...|+++.+|..|.+.+ ..+.+..+.+|.||++. ...++
T Consensus 355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p---eeL~QV~AsvLRNLSWRAD~nmKk 431 (2195)
T KOG2122|consen 355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP---EELLQVYASVLRNLSWRADSNMKK 431 (2195)
T ss_pred cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh---HHHHHHHHHHHHhccccccccHHH
Confidence 23689999999999999864 55555 56799999999998764 34888999999999994 45567
Q ss_pred HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc---c-hHHHHhhhhhh
Q 003008 310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN---I-DEAKMNAMVGR 385 (858)
Q Consensus 310 ~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~---i-~~~~~~~li~~ 385 (858)
.+.+.|-+.. |+.. .++..++.+++..+.|||||+.+....+ + ..+++.-|++
T Consensus 432 vLrE~GsVta-La~~---------------------al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg- 488 (2195)
T KOG2122|consen 432 VLRETGSVTA-LAAC---------------------ALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVG- 488 (2195)
T ss_pred HHHhhhhHHH-HHHH---------------------HHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHh-
Confidence 7778898885 7775 4566667899999999999987764333 1 2233333433
Q ss_pred hhhhHHHHhhcccccCCCCCC-------------CCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-C
Q 003008 386 SRQHFLVRIGAIESEDGRKPQ-------------SEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-I 451 (858)
Q Consensus 386 ~~~~~L~~~~~~~~~~~~~~~-------------l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~ 451 (858)
.-+++-....++. +....++.-+++...+++..|++.|++.+-.++.++|++|||++ .
T Consensus 489 --------~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR 560 (2195)
T KOG2122|consen 489 --------TLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 560 (2195)
T ss_pred --------hccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC
Confidence 1111101111111 11122222145566679999999999999999999999999965 8
Q ss_pred ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChh
Q 003008 452 NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRG 495 (858)
Q Consensus 452 ~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~ 495 (858)
+++.++.+++.|+|+.|.+|+++++..+.+.++.+|.||..++.
T Consensus 561 ~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 561 SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999987653
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=1.2e-18 Score=194.49 Aligned_cols=425 Identities=20% Similarity=0.214 Sum_probs=305.2
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc---
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN--- 177 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--- 177 (858)
.=-+|..+.+|. +.++.+|.+|...+..++..+...+ ..+++.|+|+.|+.+|.+.+.+++.+|+++|+||....
T Consensus 232 d~~lpe~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik-~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 232 DPTLPEVISMLM-SQDPSVQSNAAAYLQHLCFGDNKIK-SRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred ccccHHHHHHHh-ccChhhhHHHHHHHHHHHhhhHHHH-HHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence 345788999998 8888999999999999999877654 56678999999999999999999999999999998743
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--------------C
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--------------N 243 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--------------~ 243 (858)
+|+-.|.+.++|+.++++|+... |.++++..+.+||||+.+|..|..++... +..|..-+-.+ +
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred ccchhhhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccccc
Confidence 48999999999999999999742 99999999999999999988888887653 66666554321 2
Q ss_pred HHHHHHHHHHHHHHcC-CcCchHHHHh-CCCHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcC------hhhHHHHH
Q 003008 244 MKVKEAAGGVLANLAL-SKSNHNILVE-AGVIPKLAMLLKAN---VEGSKVIRKEARNALIELAKD------DYYRILII 312 (858)
Q Consensus 244 ~~~~~~a~~~L~nL~~-~~~~~~~i~~-~g~i~~Lv~ll~~~---~~~~~~~~~~a~~aL~nl~~~------~~~~~~i~ 312 (858)
.++..+++++|.|++. ..+.|..+.+ .|.|..|+..+++. +..+....++++.+|.||+.. +..+....
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 4678899999999988 6788888876 47799999988731 111223568999999999973 12222222
Q ss_pred HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCC-CCCccchHHHHhhhhhhhhhhHH
Q 003008 313 EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVS-DKNANIDEAKMNAMVGRSRQHFL 391 (858)
Q Consensus 313 ~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~-~~~~~i~~~~~~~li~~~~~~~L 391 (858)
+.+... .++- +..+.| ++..-... +.+
T Consensus 468 ~~~~~~--~~~~-------------~~~~~g-----------------cf~~k~~k~~~~-------------------- 495 (717)
T KOG1048|consen 468 NIARLP--GVGP-------------PAESVG-----------------CFGFKKRKSDDN-------------------- 495 (717)
T ss_pred cccccc--cCCC-------------cccccc-----------------cccchhhhchhc--------------------
Confidence 222222 1110 000000 00000000 000
Q ss_pred HHhhcccccCCCCCCCCCCcccccccccccc-cHHHHHHHh-CCCCHHHHHHHHHHHHHhcC-----ChhhHHHH-HHcC
Q 003008 392 VRIGAIESEDGRKPQSEFPIDRQLTLLPWID-GVARLVLIL-GLEDERAIARAAESIADISI-----NEHMRMLF-KEAG 463 (858)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~-----~~~~~~~l-~~~g 463 (858)
.+.. -..+-...+.. ..+.|.. ++..-+.|| .+.+..+.+.++++|.|++. ....+..+ .++.
T Consensus 496 --~~~~-----~~pe~~~~pkG--~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kek 566 (717)
T KOG1048|consen 496 --CDDL-----PIPERATAPKG--SEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEK 566 (717)
T ss_pred --cccc-----CCcccccCCCC--ceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhcc
Confidence 0000 00000001111 2233444 566544444 46688999999999999542 33455556 6899
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc----cHHHHHHHHHHHHHhcCCCcc
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI----SESLMEKTLDILGRILDPSKE 539 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~ 539 (858)
+.++|+.||+.+++.|.+.++.+|.||+.+..++..|. .++++.|+..|..+.. ++++...++.+|.|+... +
T Consensus 567 gl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~--~ 643 (717)
T KOG1048|consen 567 GLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRK--N 643 (717)
T ss_pred CccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHH--h
Confidence 99999999999999999999999999999999999988 6799999999975432 467778888999999852 4
Q ss_pred cccccccccCcCcHHHHHhhcCC-ChhHHHHHH-HHHHhhccccchhhhHhhccchh
Q 003008 540 MKSKFYDIPVNGSEKGLDAAESL-DPSIELTGN-VIEAAVSETTTSYGKVLDSVFIG 594 (858)
Q Consensus 540 ~~~~~~i~~~~~i~~Li~ll~s~-d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~ 594 (858)
..+...+.+.+|++.|+.+..+. ++.+.+.+. .+..|-+..+.+ ......|.-+
T Consensus 644 ~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh-~~~kk~g~~q 699 (717)
T KOG1048|consen 644 VLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH-FKLKKKGFKQ 699 (717)
T ss_pred HHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh-hhHhhhhhHH
Confidence 55556678889999999998874 456777777 888887777766 5555555543
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.76 E-value=4.4e-17 Score=182.07 Aligned_cols=421 Identities=16% Similarity=0.168 Sum_probs=291.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc---Ccch
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV---DKKH 222 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~---~~~~ 222 (858)
-+|..+.+|.+.++.++-+|+.-|..++..+ ..+..+.+.|+|+.||.++.+. +.++++.|+++|.||.+ +++|
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcccCCccc
Confidence 3677889999999999999999999999976 5888999999999999999999 99999999999999984 3468
Q ss_pred HHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC-C----CC------CHHH
Q 003008 223 RLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN-V----EG------SKVI 290 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~-~----~~------~~~~ 290 (858)
+..|.+.++|+.++++|+. .|.++++....+|+||++++..+..++. .+++.|-..+-.. + +. ...+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCccccccccee
Confidence 9999999999999999997 5899999999999999999888887766 3444444422111 1 11 1235
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHHc-CCcccccccccccccCCccCCCCCCCCCcchhhcc--cCCchhhHHHHHHhccC
Q 003008 291 RKEARNALIELAK-DDYYRILIIEE-GLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERT--SQGPSKFGANELLLGLN 366 (858)
Q Consensus 291 ~~~a~~aL~nl~~-~~~~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~a~~aL~nL~ 366 (858)
-.++..+|.|++. ..+.|+++.++ |.|.. |+-.+. . .+.. .+.....+|+..|+||+
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIda-L~~~iq--~----------------~i~~~~~d~K~VENcvCilRNLS 451 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDA-LLFSIQ--T----------------AIQKSDLDSKSVENCVCILRNLS 451 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHH-HHHHHH--H----------------HHHhccccchhHHHHHHHHhhcC
Confidence 5689999999999 78899999996 55664 665421 0 1111 12356777999999997
Q ss_pred CCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHH
Q 003008 367 VSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESI 446 (858)
Q Consensus 367 ~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 446 (858)
..-. .++....- +.+...+...... . +. .-+..+.....+ ....+..+
T Consensus 452 Yrl~-~Evp~~~~---------~~~~~~~~~~~~~-------~-~~-------------~~~gcf~~k~~k-~~~~~~~~ 499 (717)
T KOG1048|consen 452 YRLE-AEVPPKYR---------QVLANIARLPGVG-------P-PA-------------ESVGCFGFKKRK-SDDNCDDL 499 (717)
T ss_pred chhh-hhcCHhhh---------hHhhcccccccCC-------C-cc-------------cccccccchhhh-chhccccc
Confidence 5432 11111111 0111111000000 0 00 000000000000 00000000
Q ss_pred HH--hcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-C----hhHHHHH-HHcCChHHHHHhhcCCC
Q 003008 447 AD--ISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-S----RGVCQIM-EAEGVVHPLVNTLKNLD 517 (858)
Q Consensus 447 ~~--l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~----~~~~~~l-~~~g~i~~Li~lL~~~~ 517 (858)
-- .+..+..-.-++...+|.+-..||. +.++...++++.||.||+. . ...+..+ .++.+++.|+.+|+..+
T Consensus 500 ~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~ 579 (717)
T KOG1048|consen 500 PIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD 579 (717)
T ss_pred CCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC
Confidence 00 1112222222444556666555554 5568999999999999987 2 2335544 78899999999999544
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCC------hhHHHHHH-HHHHhhc-cccchhhhHhh
Q 003008 518 ISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLD------PSIELTGN-VIEAAVS-ETTTSYGKVLD 589 (858)
Q Consensus 518 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d------~~v~~~a~-~l~~L~~-~~~~~~~~i~~ 589 (858)
..+.+.++.+|.||+. +..++..|. ..+++.|++.|-... .++....| .+.+++. +..+. ..+.+
T Consensus 580 --~~vv~s~a~~LrNls~---d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nA-kdl~~ 652 (717)
T KOG1048|consen 580 --SDVVRSAAGALRNLSR---DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNA-KDLLE 652 (717)
T ss_pred --chHHHHHHHHHhhhcc---Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHH-HHHHh
Confidence 7788899999999999 888887666 889999999986543 35666666 8888884 44555 88999
Q ss_pred ccchhHHHHhhcC-CCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 590 SVFIGRMIGIMKT-SYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 590 ~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
.++++.|+-+.++ .++.+.+.|...|..|-...+.+..+
T Consensus 653 ~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~ 692 (717)
T KOG1048|consen 653 IKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKL 692 (717)
T ss_pred ccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999876 45578889999999998777666655
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.3e-15 Score=152.52 Aligned_cols=361 Identities=14% Similarity=0.133 Sum_probs=272.0
Q ss_pred HHHHHHHHHHhccCc--c--hHHHHHhCCCHHHHHHHHc---cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHH
Q 003008 206 KEQSMCTLWNLSVDK--K--HRLKIANTDILPLLIKSLE---DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAM 278 (858)
Q Consensus 206 ~~~a~~~L~nLs~~~--~--~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ 278 (858)
.+.....|.+|+... + +|..-.+.|..+.++.++. +++..+...++.+|..++ ..+..+.++.++..++.
T Consensus 76 ~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt---~~qpdl~da~g~~vvv~ 152 (461)
T KOG4199|consen 76 LEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT---HKQPDLFDAEAMAVVLK 152 (461)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---cCCcchhccccHHHHHH
Confidence 344567777777311 1 1222237788888777754 346667777777777665 44557888899999999
Q ss_pred HHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhH
Q 003008 279 LLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFG 357 (858)
Q Consensus 279 ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 357 (858)
+|....++ ..+.......+..-|. ++.||+.+++.++.+ .+.+. +.+.++..+.++
T Consensus 153 lL~~~~~~-~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~-Li~~~---------------------l~~~gk~~~VRe 209 (461)
T KOG4199|consen 153 LLALKVES-EEVTLLTLQWLQKACIMHEVNRQLFMELKILE-LILQV---------------------LNREGKTRTVRE 209 (461)
T ss_pred HHhcccch-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH-HHHHH---------------------HcccCccHHHHH
Confidence 98765443 3355666677777776 899999999999999 36554 345555568888
Q ss_pred HHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCC-CCH
Q 003008 358 ANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL-EDE 436 (858)
Q Consensus 358 a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~ 436 (858)
..|+++.+..+++.+.....+- ..-+.+..++++..|++.+.- -++
T Consensus 210 l~~a~r~l~~dDDiRV~fg~ah---------------------------------~hAr~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 210 LYDAIRALLTDDDIRVVFGQAH---------------------------------GHARTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HHHHHHHhcCCCceeeecchhh---------------------------------HHHHHHHHhhhHHHHHHHHHccCCc
Confidence 9999999987775433111100 001334456678888888865 468
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-HHHH---HHHHHHHHHhhcChhHHHHHHHcCChHHHHHh
Q 003008 437 RAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-DAVR---LATTHALERLSVSRGVCQIMEAEGVVHPLVNT 512 (858)
Q Consensus 437 ~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-~~v~---~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~l 512 (858)
.+....+.+|..++-.++.++.+.+.||+..|+.++.+.+ ..+| +.++..|..|+.+++++..|++.|+.+.++.+
T Consensus 257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHH
Confidence 8999999999999999999999999999999999998744 4444 67888999999999999999999999999998
Q ss_pred hcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC-C-ChhHHHHHH-HHHHhhccccchhhhHhh
Q 003008 513 LKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES-L-DPSIELTGN-VIEAAVSETTTSYGKVLD 589 (858)
Q Consensus 513 L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-~-d~~v~~~a~-~l~~L~~~~~~~~~~i~~ 589 (858)
+....+++.+.+.++.+++-++..+++.. ..+++.|+-...+..|+. | ...+++++| .|+|++...... ..++=
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhs--a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~-~~~~l 413 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRSPDHS--AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN-RTILL 413 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcCcchH--HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc-cchHH
Confidence 87778889999999999999987444443 457788888889999885 3 368999999 999998777666 45555
Q ss_pred ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 590 SVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 590 ~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
..|++.|+.--.+.++.....+-.+|+.|-++...++.-
T Consensus 414 ~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~w 452 (461)
T KOG4199|consen 414 ANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREEW 452 (461)
T ss_pred hccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHHh
Confidence 566799998888888888888889999987776665543
No 15
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2.1e-14 Score=149.84 Aligned_cols=382 Identities=14% Similarity=0.200 Sum_probs=284.8
Q ss_pred HHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCC
Q 003008 121 EQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPS 200 (858)
Q Consensus 121 ~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~ 200 (858)
.-|+..|.|++.+... +.-|+..+.+..|++.|..++.+........|..|+...+|+..+.+.|.|..|+++....
T Consensus 281 rva~ylLlNlAed~~~--ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~- 357 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISV--ELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ- 357 (791)
T ss_pred HHHHHHHHHHhhhhhH--HHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC-
Confidence 3467788999987653 4667788999999999999998888888999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHH
Q 003008 201 LTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLL 280 (858)
Q Consensus 201 ~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll 280 (858)
+++.+...+..|.|||++...|.+++..|.+|.|+.++.++. -...|+..|..++.++..+..+....+|+.+.+.+
T Consensus 358 -h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 358 -HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred -CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764 33568889999999999999999889999999965
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHH
Q 003008 281 KANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANE 360 (858)
Q Consensus 281 ~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ 360 (858)
-++... + +.......-.|+|.+..|.+.+++..++.. |++.. +++.++ . ...
T Consensus 435 ~~~~~~-~-vdl~lia~ciNl~lnkRNaQlvceGqgL~~-LM~ra-~k~~D~---------------------l---LmK 486 (791)
T KOG1222|consen 435 LSGTGS-E-VDLALIALCINLCLNKRNAQLVCEGQGLDL-LMERA-IKSRDL---------------------L---LMK 486 (791)
T ss_pred HhcCCc-e-ecHHHHHHHHHHHhccccceEEecCcchHH-HHHHH-hcccch---------------------H---HHH
Confidence 444332 1 222333344799999999999999888884 77742 111111 0 233
Q ss_pred HHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHH
Q 003008 361 LLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAI 439 (858)
Q Consensus 361 aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~ 439 (858)
.++|++.++. +.+ -+|+-. +..|...++ .+++...
T Consensus 487 ~vRniSqHeg-------~tq-------n~Fidy------------------------------vgdLa~i~~nd~~E~F~ 522 (791)
T KOG1222|consen 487 VVRNISQHEG-------ATQ-------NMFIDY------------------------------VGDLAGIAKNDNSESFG 522 (791)
T ss_pred HHHHhhhccc-------hHH-------HHHHHH------------------------------HHHHHHHhhcCchHHHH
Confidence 4677776652 111 111211 222333333 4556677
Q ss_pred HHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCC
Q 003008 440 ARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNL 516 (858)
Q Consensus 440 ~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~ 516 (858)
..|.++|+|+.- .-+..+.+.+...||.+-..|..+ ..+++...+.+++.++....+...+..+|.|+.++.+|+..
T Consensus 523 ~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 523 LECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred HHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhh
Confidence 899999999775 445566667899999999988754 37788889999999999999999999999999999999865
Q ss_pred CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHh-hccchhH
Q 003008 517 DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVL-DSVFIGR 595 (858)
Q Consensus 517 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~-~~g~i~~ 595 (858)
.++++...........+. .+..+| ..|+ +...-..
T Consensus 603 QeDDEfV~QiiyVF~Q~l-------------------------------------------~He~tr-~~miket~~~Ay 638 (791)
T KOG1222|consen 603 QEDDEFVVQIIYVFLQFL-------------------------------------------KHELTR-RLMIKETALGAY 638 (791)
T ss_pred cccchHHHHHHHHHHHHH-------------------------------------------HHHHHH-HHHHhhccchHH
Confidence 555544332222222221 122233 3333 3344457
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 596 MIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 596 L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
|+.++.+.+.+++.-|-.+|--++..+..
T Consensus 639 lIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 639 LIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 88999999999999888888888765543
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.61 E-value=8.1e-14 Score=144.05 Aligned_cols=438 Identities=16% Similarity=0.074 Sum_probs=289.8
Q ss_pred HHHHHHHHHHHHcccCCcccHHHHHH---hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHH
Q 003008 118 LDREQAVEALWKYSLGGKKCIDYIMQ---FSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEIT 193 (858)
Q Consensus 118 ~~~~~a~~~L~~la~~~~~~~~~ii~---~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv 193 (858)
.++.....++...+.++.. +..+++ +++.+..|.+...+++.++.+++.++|+|++..+ ++|.++.+.||-..++
T Consensus 57 tv~~~qssC~A~~sk~ev~-r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi 135 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVE-RSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI 135 (604)
T ss_pred hhhhhhHHHHHHHhhhHHH-HHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence 4556666677777754443 233331 3667777777778888999999999999999855 8999999999977777
Q ss_pred HHhcCCC--CC---HHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCc-C-c
Q 003008 194 GLLTRPS--LT---SEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSK-S-N 263 (858)
Q Consensus 194 ~lL~~~~--~~---~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~-~-~ 263 (858)
++|+... ++ .+...-+...|.|-. .+++.+.++.+.|.++.|...+.-+ +....+.......||..-. + .
T Consensus 136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~ 215 (604)
T KOG4500|consen 136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML 215 (604)
T ss_pred hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh
Confidence 7776531 12 355556778888876 4556799999999999999887544 5555666666666664321 2 2
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG 343 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~ 343 (858)
.....+......+++++.+-.. +..++-+..+|.-.+.++..+-.+++.|.+.. ++++.
T Consensus 216 ~~~~~d~sl~~~l~~ll~~~v~--~d~~eM~feila~~aend~Vkl~la~~gl~e~-~~~lv------------------ 274 (604)
T KOG4500|consen 216 YPFCKDCSLVFMLLQLLPSMVR--EDIDEMIFEILAKAAENDLVKLSLAQNGLLED-SIDLV------------------ 274 (604)
T ss_pred hhhhccchHHHHHHHHHHHhhc--cchhhHHHHHHHHHhcCcceeeehhhcchHHH-HHHHH------------------
Confidence 2333444556677777755322 12667788888888888888888888887774 77753
Q ss_pred chhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc-
Q 003008 344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID- 422 (858)
Q Consensus 344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~- 422 (858)
++.+..+.+.-..++....++ ++. +.-.|... .+.+...+
T Consensus 275 ----~~~k~~t~k~d~~~l~k~~~e-------------l~v------llltGDeS----------------Mq~L~~~p~ 315 (604)
T KOG4500|consen 275 ----RNMKDFTKKTDMLNLFKRIAE-------------LDV------LLLTGDES----------------MQKLHADPQ 315 (604)
T ss_pred ----HhcccccchHHHHHHHHhhhh-------------Hhh------hhhcCchH----------------HHHHhcCcH
Confidence 110000001101111111100 000 11122100 01111122
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC-----CcHHHHHHHHHHHHHhhcChhHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH-----SSDAVRLATTHALERLSVSRGVC 497 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~-----~~~~v~~~a~~aL~~Ls~~~~~~ 497 (858)
.+..++.++.|.|...+..++-+++|+++++.++..+++.|.+..|+.+|.. ++..++.+++.||+|+.-.-.++
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nk 395 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNK 395 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCch
Confidence 6778899999999999999999999999999999999999999999998853 45778899999999999988899
Q ss_pred HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh-hHHHHHH-HHHH
Q 003008 498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP-SIELTGN-VIEA 575 (858)
Q Consensus 498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~-~v~~~a~-~l~~ 575 (858)
..+..+|..+.++..++... +.+.-.-..+++-+-.. .++-.....-...-++.|+.--+++|- .+..... .+..
T Consensus 396 a~~~~aGvteaIL~~lk~~~--ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 396 AHFAPAGVTEAILLQLKLAS--PPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred hhccccchHHHHHHHHHhcC--CcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 99999999999999988544 33333333444433321 011111001111235556666666663 3555555 6666
Q ss_pred hhccccch--hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 576 AVSETTTS--YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 576 L~~~~~~~--~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
++.+.... +..+-+.|+|..++..+.+.+...|..|+-+|.-++
T Consensus 473 lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 473 LIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 66553321 255667899999999999999999999988887664
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.60 E-value=5.7e-14 Score=143.69 Aligned_cols=199 Identities=21% Similarity=0.185 Sum_probs=174.1
Q ss_pred ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc
Q 003008 98 TFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 98 ~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~ 177 (858)
..+.+.+++|+.+|+.+.||.++..+..++++.+.++.++ .++++.|+++.+..+|.++++.+++.|+++|.|++.+.
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq--~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ--DIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH--HHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 3678889999999997789999999999999999988874 67889999999999999999999999999999999999
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
+++..|.. .++.+++...+.+.+..++..++++|.||+..++++..+. +.++.++.+|.+|+..++.+++++|.||
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99998865 4888888666554588999999999999999988877774 4799999999999999999999999999
Q ss_pred cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
+.++.....+..+++++.++.++.... .......++....|+..+
T Consensus 162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~--~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SENPDMTRELLSAQVLSSFLSLFNSSE--SKENLLRVLTFFENINEN 206 (254)
T ss_pred ccCHHHHHHHHhccchhHHHHHHccCC--ccHHHHHHHHHHHHHHHh
Confidence 999999888888899999999997643 233556777777777654
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=7.7e-13 Score=132.98 Aligned_cols=329 Identities=15% Similarity=0.161 Sum_probs=252.7
Q ss_pred hcCcHHHHHHHH---ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cC
Q 003008 144 FSGCINLTVNLL---RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VD 219 (858)
Q Consensus 144 ~~g~i~~Li~lL---~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~ 219 (858)
..|..+.++-++ .+++......++.+|..+... +..+.++.+...++++|....++.++.......+..-| .+
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~---qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHK---QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC---CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 345555554444 455666777787777777653 33466777889999988876556777777777777766 56
Q ss_pred cchHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCch----------HHHHhCCCHHHHHHHHccCCCCCH
Q 003008 220 KKHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNH----------NILVEAGVIPKLAMLLKANVEGSK 288 (858)
Q Consensus 220 ~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~----------~~i~~~g~i~~Lv~ll~~~~~~~~ 288 (858)
+-||+.+++.+.++.+.+.|.. +...+.+...|++.-|...++.| ..|.+.|++..|++.++.+-+ |
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d--p 256 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGID--P 256 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCC--c
Confidence 6789999999999999866654 45568888999999998877544 356777889999999988764 3
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCC
Q 003008 289 VIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVS 368 (858)
Q Consensus 289 ~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~ 368 (858)
...-....+|..|+.+.+.++.|.+.||+.. |+++++
T Consensus 257 ~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t-l~~~i~------------------------------------------ 293 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVRDEICKSIAESGGLDT-LLRCID------------------------------------------ 293 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCHHH-HHHHHh------------------------------------------
Confidence 3556788899999999999999999999995 777521
Q ss_pred CCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH
Q 003008 369 DKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD 448 (858)
Q Consensus 369 ~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 448 (858)
+.| +.+ ..+....++..|..
T Consensus 294 d~n-------------------------------------------------~~~-----------~r~l~k~~lslLra 313 (461)
T KOG4199|consen 294 DSN-------------------------------------------------EQG-----------NRTLAKTCLSLLRA 313 (461)
T ss_pred hhc-------------------------------------------------hhh-----------HHHHHHHHHHHHHH
Confidence 000 000 11234467788888
Q ss_pred hcCChhhHHHHHHcCcHHHHHHhhc--CCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHH
Q 003008 449 ISINEHMRMLFKEAGAIKYLVKLLD--HSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEK 525 (858)
Q Consensus 449 l~~~~~~~~~l~~~g~i~~Lv~LL~--~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~ 525 (858)
+++++.++..+++.|+.+.++.++. +.++.|.++++.++..|+. .|++...+++.|+-...++.++.......+|+.
T Consensus 314 lAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrn 393 (461)
T KOG4199|consen 314 LAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRN 393 (461)
T ss_pred HhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999999999874 4569999999999999998 899999999999999999999987777889999
Q ss_pred HHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccch
Q 003008 526 TLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTS 583 (858)
Q Consensus 526 a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~ 583 (858)
+++.+.|+...+.+. ..++=..|++.|+..-.+.+++....+. +|+-|-.+...|
T Consensus 394 ac~~IRNiv~rs~~~---~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lr 449 (461)
T KOG4199|consen 394 ACNMIRNIVVRSAEN---RTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLR 449 (461)
T ss_pred HHHHHHHHHHhhhhc---cchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhH
Confidence 999999998744322 2344578999999999999988888887 777776555444
No 19
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.56 E-value=1e-13 Score=160.61 Aligned_cols=349 Identities=16% Similarity=0.168 Sum_probs=250.5
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCC-CHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHH----
Q 003008 165 AAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSL-TSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKS---- 238 (858)
Q Consensus 165 ~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~l---- 238 (858)
..++.+..++.+.+....+...|++|.|+++|-.+.+ +.+.+..|-.+|.|+-.. ++.+..=.+..++..|=++
T Consensus 213 e~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC 292 (2195)
T KOG2122|consen 213 EMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC 292 (2195)
T ss_pred HHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 3456677888888888889999999999999987642 567888999999999643 3333333333333333221
Q ss_pred ------HccC--------CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHcc-----CCC----CCHHHHHHHH
Q 003008 239 ------LEDE--------NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA-----NVE----GSKVIRKEAR 295 (858)
Q Consensus 239 ------l~~~--------~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~-----~~~----~~~~~~~~a~ 295 (858)
+..+ +..-.-.|+.+|..++++.+.|..+.+-|+++.+-+|+.- ++. ....+++++.
T Consensus 293 ~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~ 372 (2195)
T KOG2122|consen 293 ETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAG 372 (2195)
T ss_pred HHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 2211 1223347889999999999999999999999888887653 111 1235899999
Q ss_pred HHHHHHhc-ChhhHHHHHHc-CCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc
Q 003008 296 NALIELAK-DDYYRILIIEE-GLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN 373 (858)
Q Consensus 296 ~aL~nl~~-~~~~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~ 373 (858)
.+|-||.. +..|+..++.. |.+.. +|..+ ........+..+..|+||+...+..
T Consensus 373 MALTNLTFGDv~NKa~LCs~rgfMea-vVAQL----------------------~s~peeL~QV~AsvLRNLSWRAD~n- 428 (2195)
T KOG2122|consen 373 MALTNLTFGDVANKATLCSQRGFMEA-VVAQL----------------------ISAPEELLQVYASVLRNLSWRADSN- 428 (2195)
T ss_pred HHhhccccccccchhhhhhhhhHHHH-HHHHH----------------------hcChHHHHHHHHHHHHhcccccccc-
Confidence 99999999 66789888886 44554 66643 1112244555788999998655321
Q ss_pred chHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHH-HhCCCCHHHHHHHHHHHHHhc-C
Q 003008 374 IDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVL-ILGLEDERAIARAAESIADIS-I 451 (858)
Q Consensus 374 i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~~l~-~ 451 (858)
+..++. ..|-+..|+. -+....+......+.+|||++ +
T Consensus 429 -----mKkvLr-----------------------------------E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH 468 (2195)
T KOG2122|consen 429 -----MKKVLR-----------------------------------ETGSVTALAACALRNKKESTLKAVLSALWNLSAH 468 (2195)
T ss_pred -----HHHHHH-----------------------------------hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc
Confidence 111100 0011111221 123344556778899999965 7
Q ss_pred ChhhHHHHHH-cCcHHHHHHhhcCC----cHHHHHHHHHHHHHhhc----ChhHHHHHHHcCChHHHHHhhcCCCccHHH
Q 003008 452 NEHMRMLFKE-AGAIKYLVKLLDHS----SDAVRLATTHALERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISESL 522 (858)
Q Consensus 452 ~~~~~~~l~~-~g~i~~Lv~LL~~~----~~~v~~~a~~aL~~Ls~----~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~ 522 (858)
+.+|+..|-. -|++..|+.+|+.+ ...+.+.+.++|.|+++ ...+|+.+.+.+++..|++.|++.+ ..+
T Consensus 469 cteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~S--LTi 546 (2195)
T KOG2122|consen 469 CTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHS--LTI 546 (2195)
T ss_pred ccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcc--eEE
Confidence 8899888885 79999999999865 36788999999999987 6788999999999999999999544 667
Q ss_pred HHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcC
Q 003008 523 MEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKT 602 (858)
Q Consensus 523 ~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s 602 (858)
.-+++.+||||+. .+.+.+ +.+++.|+++.|..|+.+
T Consensus 547 VSNaCGTLWNLSA------------------------------------------R~p~DQ-q~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 547 VSNACGTLWNLSA------------------------------------------RSPEDQ-QMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred eecchhhhhhhhc------------------------------------------CCHHHH-HHHHhcccHHHHHHHHhh
Confidence 7789999999987 223344 778889999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCC
Q 003008 603 SYPDLQRKAASILEFITIID 622 (858)
Q Consensus 603 ~~~~v~~~a~~~L~~l~~~~ 622 (858)
.+..|-+-++.+|.|+....
T Consensus 584 KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 584 KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhHHHHHHHHhcCC
Confidence 99888888888898887655
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.46 E-value=2.5e-12 Score=131.60 Aligned_cols=174 Identities=22% Similarity=0.314 Sum_probs=153.8
Q ss_pred HHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Q 003008 141 IMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD 219 (858)
Q Consensus 141 ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~ 219 (858)
++ +.+-+..|+.+|+.. ++.+++.+..++.|.+..+.++..|.+.|+++.+..+|..+ ++.+++.|+++|.|++.+
T Consensus 8 ~l-~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 8 IL-EAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREKALNALNNLSVN 84 (254)
T ss_pred Cc-CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHHHHHHHHhcCCC
Confidence 45 678889999999864 89999999999999999999999999999999999999998 999999999999999999
Q ss_pred cchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHH
Q 003008 220 KKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNA 297 (858)
Q Consensus 220 ~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~a 297 (858)
.+++..+- ..++.+++.+.+. +..++..++++|.||+..++.+..+. +.++.++.+|.+|+. ..+..++++
T Consensus 85 ~en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~---~~k~~vLk~ 157 (254)
T PF04826_consen 85 DENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSE---KTKVQVLKV 157 (254)
T ss_pred hhhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCCh---HHHHHHHHH
Confidence 99988874 3678887765554 77899999999999998888877775 479999999998854 488899999
Q ss_pred HHHHhcChhhHHHHHHcCCccccccccc
Q 003008 298 LIELAKDDYYRILIIEEGLVPVPMVGAD 325 (858)
Q Consensus 298 L~nl~~~~~~~~~i~~~g~v~~~Lv~ll 325 (858)
|.||+.++.+...++.+.++.. |+.++
T Consensus 158 L~nLS~np~~~~~Ll~~q~~~~-~~~Lf 184 (254)
T PF04826_consen 158 LVNLSENPDMTRELLSAQVLSS-FLSLF 184 (254)
T ss_pred HHHhccCHHHHHHHHhccchhH-HHHHH
Confidence 9999999999999999999984 88874
No 21
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.46 E-value=2.1e-11 Score=126.42 Aligned_cols=408 Identities=13% Similarity=0.090 Sum_probs=271.5
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC----C---HHHHHHHHHHHH
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE----S---SAACEAAAGLLR 171 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~----~---~~~~~~a~~aL~ 171 (858)
...|.+..|..... |+|.++-.++.++|+|++.++...+..+. +.||-..+++.|+.. + .+.-..+.+.|.
T Consensus 84 I~a~~le~Lrq~ps-S~d~ev~~Q~~RaLgNiCydn~E~R~a~~-~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 84 IDAEALELLRQTPS-SPDTEVHEQCFRALGNICYDNNENRAAFF-NLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred hHHHHHHHHHhCCC-CCcccHHHHHHHHHhhhhccCchhHHHHH-hcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 46778888888886 77888999999999999998888766666 799977777777643 2 344445778888
Q ss_pred HhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-Ccch-HHHHHhCCCHHHHHHHHccC-CHHHH
Q 003008 172 SISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKH-RLKIANTDILPLLIKSLEDE-NMKVK 247 (858)
Q Consensus 172 nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~-~~~i~~~g~i~~Lv~ll~~~-~~~~~ 247 (858)
|-..+. +.|..+++.|+++.|..++--+-.+....+.......||.. -.++ .....+....-.+++++.+- .+++.
T Consensus 162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~ 241 (604)
T KOG4500|consen 162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDID 241 (604)
T ss_pred HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchh
Confidence 887654 69999999999999998766442266777777777777653 2233 44444666677788888765 67889
Q ss_pred HHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHH-----HHHHHHHHHHHHhcChhhHHHHHHcC-Cccccc
Q 003008 248 EAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKV-----IRKEARNALIELAKDDYYRILIIEEG-LVPVPM 321 (858)
Q Consensus 248 ~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-----~~~~a~~aL~nl~~~~~~~~~i~~~g-~v~~~L 321 (858)
+.+...|...+.++..+..+.++|.++.++.+++.....+.. .-..++....-+...++.-..+..-+ .+. .+
T Consensus 242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~-~~ 320 (604)
T KOG4500|consen 242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLD-FL 320 (604)
T ss_pred hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHH-HH
Confidence 999999999999999999999999999999999873332211 11112222222222233333333333 333 24
Q ss_pred ccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc--chHHHHhhhhhhhhhhHHHHhhcccc
Q 003008 322 VGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN--IDEAKMNAMVGRSRQHFLVRIGAIES 399 (858)
Q Consensus 322 v~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~--i~~~~~~~li~~~~~~~L~~~~~~~~ 399 (858)
+. ++++.+.+.+.....++.|++..++++. ++...++
T Consensus 321 ~s----------------------w~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~n------------------- 359 (604)
T KOG4500|consen 321 ES----------------------WFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLN------------------- 359 (604)
T ss_pred HH----------------------HhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHH-------------------
Confidence 43 3344444566667788899987775432 2323333
Q ss_pred cCCCCCCCCCCcccccccccccccHHHHHHHhC-----CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC
Q 003008 400 EDGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-----LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH 474 (858)
Q Consensus 400 ~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~ 474 (858)
.|+..|. +++-+.|..++.+|.|+..--.++..+..+|.++.+...++.
T Consensus 360 --------------------------kL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~ 413 (604)
T KOG4500|consen 360 --------------------------KLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL 413 (604)
T ss_pred --------------------------HHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHh
Confidence 3333332 346678899999999998888899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhcChh-HHHHH-HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCc
Q 003008 475 SSDAVRLATTHALERLSVSRG-VCQIM-EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGS 552 (858)
Q Consensus 475 ~~~~v~~~a~~aL~~Ls~~~~-~~~~l-~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i 552 (858)
..+.|...-.+.|..+-...+ ....+ ..-..+..|+.--++++. ..+--..-..+..+-..++...--..+..+||+
T Consensus 414 ~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~-aGv~gESnRll~~lIkHs~~kdv~~tvpksg~i 492 (604)
T KOG4500|consen 414 ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDF-AGVAGESNRLLLGLIKHSKYKDVILTVPKSGGI 492 (604)
T ss_pred cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCcc-chhhhhhhHHHHHHHHhhHhhhhHhhccccccH
Confidence 999998887777776655433 22222 222345555555554442 122223333444443311111111245667899
Q ss_pred HHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008 553 EKGLDAAESLDPSIELTGN-VIEAAV 577 (858)
Q Consensus 553 ~~Li~ll~s~d~~v~~~a~-~l~~L~ 577 (858)
+..++.+.+.+...+-.++ +++.+.
T Consensus 493 k~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 493 KEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 9999999988888887777 666543
No 22
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=2.7e-10 Score=119.60 Aligned_cols=273 Identities=19% Similarity=0.222 Sum_probs=197.4
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCC
Q 003008 164 EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDEN 243 (858)
Q Consensus 164 ~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~ 243 (858)
..|+-.|.|++.+-..-..+.....+..||+.|... +.+........|..||..++||..+.+.|.+..|++++...+
T Consensus 281 rva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~--n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS--NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc--chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 356777888888776667777888899999999987 888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccc
Q 003008 244 MKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVG 323 (858)
Q Consensus 244 ~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ 323 (858)
++++...+..|.|++.+...|..++..|.+|.|+.++.+.+ -...|...|.+++.+++.+....-...++. +++
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~-----~~~iA~~~lYh~S~dD~~K~MfayTdci~~-lmk 432 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT-----KHGIALNMLYHLSCDDDAKAMFAYTDCIKL-LMK 432 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc-----cchhhhhhhhhhccCcHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999997643 234689999999999988888888888884 666
Q ss_pred ccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHH-hccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCC
Q 003008 324 ADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELL-LGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDG 402 (858)
Q Consensus 324 ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL-~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~ 402 (858)
.+ +..+++ .+-. ++-++ .|++.+..|.++
T Consensus 433 ~v--------------------~~~~~~-~vdl-~lia~ciNl~lnkRNaQl---------------------------- 462 (791)
T KOG1222|consen 433 DV--------------------LSGTGS-EVDL-ALIALCINLCLNKRNAQL---------------------------- 462 (791)
T ss_pred HH--------------------HhcCCc-eecH-HHHHHHHHHHhccccceE----------------------------
Confidence 42 001111 1111 22222 255544444331
Q ss_pred CCCCCCCCcccccccccccc-cHHHHHHH-hCCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhcCCc-HH
Q 003008 403 RKPQSEFPIDRQLTLLPWID-GVARLVLI-LGLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSS-DA 478 (858)
Q Consensus 403 ~~~~l~~~~~~~~~~l~~~~-~i~~Lv~l-L~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~~~~-~~ 478 (858)
.-+| ++..|... +++.|. ...+ .+.|++.++. .+..++ ..|.-|...++..+ ..
T Consensus 463 ----------------vceGqgL~~LM~ra~k~~D~-lLmK---~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~ 520 (791)
T KOG1222|consen 463 ----------------VCEGQGLDLLMERAIKSRDL-LLMK---VVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSES 520 (791)
T ss_pred ----------------EecCcchHHHHHHHhcccch-HHHH---HHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHH
Confidence 1122 44444433 222222 2223 3344444333 333333 34666777776544 66
Q ss_pred HHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCC
Q 003008 479 VRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNL 516 (858)
Q Consensus 479 v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~ 516 (858)
.-..|.+.|+||.- +-++...+.....+|.+-..|+..
T Consensus 521 F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pg 559 (791)
T KOG1222|consen 521 FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPG 559 (791)
T ss_pred HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCC
Confidence 77888899999987 677888888899999999888743
No 23
>PRK09687 putative lyase; Provisional
Probab=99.45 E-value=9.2e-12 Score=130.63 Aligned_cols=162 Identities=14% Similarity=0.086 Sum_probs=120.0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
-++.|..+|.+++..++..++++|..+.. ....+.+..+++++++.+|..++++|+.|...... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 46788999999999999999999998765 56788899999999999999999999999753211 1
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT 581 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~ 581 (858)
...++.|..++. .+.+..++..++.+|+++......+ ....+..+...+.++++.|+..++ +|..+
T Consensus 89 ~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~~~~~-------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----- 155 (280)
T PRK09687 89 DNVFNILNNLAL-EDKSACVRASAINATGHRCKKNPLY-------SPKIVEQSQITAFDKSTNVRFAVAFALSVI----- 155 (280)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccccccc-------chHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----
Confidence 235677776643 3445899999999999986522111 112345566777778888888877 66433
Q ss_pred chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008 582 TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI 618 (858)
Q Consensus 582 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l 618 (858)
.+...++.|+.+|++.++.|+..|+.+|+.+
T Consensus 156 ------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 156 ------NDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 1233678888888888888888888777665
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=1.3e-09 Score=124.62 Aligned_cols=388 Identities=15% Similarity=0.131 Sum_probs=271.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hHHHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLV 183 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~~~i 183 (858)
+.+.+.|+ +.+.+....++.+|..+-..... ..+ ..+..+.|...|.++++.+|..+++.|.++..+++ ....+
T Consensus 41 ~~lf~~L~-~~~~e~v~~~~~iL~~~l~~~~~--~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~ 115 (503)
T PF10508_consen 41 PVLFDCLN-TSNREQVELICDILKRLLSALSP--DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL 115 (503)
T ss_pred HHHHHHHh-hcChHHHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh
Confidence 44777787 66656666666677666553332 223 37888999999999999999999999999988765 45666
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-C
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-S 262 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~ 262 (858)
.+.+.++.++.++.++ +..+...|+.+|.+++.++.....+...+.+..|..++..++..+|..+..++.+++... +
T Consensus 116 ~~~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~ 193 (503)
T PF10508_consen 116 VDNELLPLIIQCLRDP--DLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPE 193 (503)
T ss_pred cCccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHH
Confidence 7799999999999998 999999999999999998888778888888999999999888889999999999998764 5
Q ss_pred chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD 342 (858)
Q Consensus 263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~ 342 (858)
....+.+.|.++.++..+++. ...++.+++..|..|+..+.+...+.+.|+++. |++++.....+|.+.
T Consensus 194 ~~~~~~~sgll~~ll~eL~~d---DiLvqlnalell~~La~~~~g~~yL~~~gi~~~-L~~~l~~~~~dp~~~------- 262 (503)
T PF10508_consen 194 AAEAVVNSGLLDLLLKELDSD---DILVQLNALELLSELAETPHGLQYLEQQGIFDK-LSNLLQDSEEDPRLS------- 262 (503)
T ss_pred HHHHHHhccHHHHHHHHhcCc---cHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHH-HHHHHhccccCCccc-------
Confidence 555777889999999999763 455889999999999999999999999999995 888753222211000
Q ss_pred cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008 343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID 422 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 422 (858)
. -.........++++.... ++++ .. ...
T Consensus 263 --------~-~~l~g~~~f~g~la~~~~-----------------~~v~------------------------~~--~p~ 290 (503)
T PF10508_consen 263 --------S-LLLPGRMKFFGNLARVSP-----------------QEVL------------------------EL--YPA 290 (503)
T ss_pred --------c-hhhhhHHHHHHHHHhcCh-----------------HHHH------------------------HH--HHH
Confidence 0 000001112222221000 0000 00 012
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH-HHc-Cc----HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLF-KEA-GA----IKYLVKLLDHSSDAVRLATTHALERLSVSRGV 496 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l-~~~-g~----i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~ 496 (858)
.+..+..++.+.|+..+..|..+++.++.+.+.+..+ ... +. +........++..++|..+..+|.++-.....
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC
Confidence 4556678889999999999999999999999999888 433 23 44445556677789999999999998542110
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcH-HHHHhhcCCChhHHHHHH-HHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSE-KGLDAAESLDPSIELTGN-VIE 574 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~-~Li~ll~s~d~~v~~~a~-~l~ 574 (858)
..+.++....-.....+.. +... .++++++.|=||++..+. .+.
T Consensus 371 --------------------~~~~~i~~~~~~w~~~~~~--------------~~~~~~l~~~~~qPF~elr~a~~~~l~ 416 (503)
T PF10508_consen 371 --------------------RQDNDILSITESWYESLSG--------------SPLSNLLMSLLKQPFPELRCAAYRLLQ 416 (503)
T ss_pred --------------------CchHHHHHHHHHHHHHhcC--------------CchHHHHHHHhcCCchHHHHHHHHHHH
Confidence 0001111111111111221 0112 566667666689999998 888
Q ss_pred HhhccccchhhhHhhccchhHHHHhh
Q 003008 575 AAVSETTTSYGKVLDSVFIGRMIGIM 600 (858)
Q Consensus 575 ~L~~~~~~~~~~i~~~g~i~~L~~lL 600 (858)
.++...... ..+...++ +++++
T Consensus 417 ~l~~~~Wg~-~~i~~~~g---fie~l 438 (503)
T PF10508_consen 417 ALAAQPWGQ-REICSSPG---FIEYL 438 (503)
T ss_pred HHhcCHHHH-HHHHhCcc---HHhhh
Confidence 888888777 66766544 44554
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.40 E-value=1.5e-10 Score=141.85 Aligned_cols=279 Identities=20% Similarity=0.161 Sum_probs=206.7
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~ 178 (858)
.+.+.++.|+..|+ ++|+.+|..|+..|..+. ..+.++.|+..|.++++.+|..|+.+|..+....
T Consensus 618 l~~~~~~~L~~~L~-D~d~~VR~~Av~~L~~~~------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~- 683 (897)
T PRK13800 618 LDAPSVAELAPYLA-DPDPGVRRTAVAVLTETT------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL- 683 (897)
T ss_pred ccchhHHHHHHHhc-CCCHHHHHHHHHHHhhhc------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-
Confidence 37788899999998 999999999999998653 2456788999999999999999999998885321
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
...+.|...|.++ ++.++..++.+|..+.. +....|++.|.++++.++..|+.+|..+.
T Consensus 684 --------~~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 684 --------PPAPALRDHLGSP--DPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred --------CchHHHHHHhcCC--CHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 1236777888887 99999999999988652 22456788999999999999999998752
Q ss_pred CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008 259 LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP 338 (858)
Q Consensus 259 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~ 338 (858)
..+.|..++... .+.+|..++.+|..+..... ..++ .|..++
T Consensus 743 -------------~~~~l~~~l~D~---~~~VR~~aa~aL~~~~~~~~--------~~~~-~L~~ll------------- 784 (897)
T PRK13800 743 -------------DVESVAGAATDE---NREVRIAVAKGLATLGAGGA--------PAGD-AVRALT------------- 784 (897)
T ss_pred -------------CcHHHHHHhcCC---CHHHHHHHHHHHHHhccccc--------hhHH-HHHHHh-------------
Confidence 234566777554 46699999999998875321 1133 244432
Q ss_pred CCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccc
Q 003008 339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL 418 (858)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l 418 (858)
...+..++..++.+|.++....
T Consensus 785 ---------~D~d~~VR~aA~~aLg~~g~~~------------------------------------------------- 806 (897)
T PRK13800 785 ---------GDPDPLVRAAALAALAELGCPP------------------------------------------------- 806 (897)
T ss_pred ---------cCCCHHHHHHHHHHHHhcCCcc-------------------------------------------------
Confidence 1112133333555555442111
Q ss_pred cccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHH
Q 003008 419 PWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQ 498 (858)
Q Consensus 419 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~ 498 (858)
.....++..|+++++.++..|+.+|+.+.. ..+++.|+.+|++++..||..|+.+|+.+..++.
T Consensus 807 ---~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~--- 870 (897)
T PRK13800 807 ---DDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPA--- 870 (897)
T ss_pred ---hhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH---
Confidence 023457788899999999999999998765 4578999999999999999999999999743333
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHH
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR 532 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~ 532 (858)
..+.|...+.+. +..++..|..+|..
T Consensus 871 ------a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ------ARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred ------HHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 366777788744 58899999888753
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.34 E-value=1e-09 Score=125.60 Aligned_cols=345 Identities=16% Similarity=0.176 Sum_probs=244.2
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR 180 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~ 180 (858)
.+..+.|...|. .+++.+|..+++.|.+++.+++... .++.+.+.++.++..+.+++.++...|+.+|.+|+..+...
T Consensus 76 ~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~-~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 76 PQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAA-QLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHH-HHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH
Confidence 566677888887 7888999999999999998777643 45558999999999999999999999999999999988877
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
..+...+.+..|..++... +..++..+..++.+++. +++....+...|.++.++..+.++|.-++..++.+|..|+.
T Consensus 154 ~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred HHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 8888888899999999987 88889999999999985 45667777789999999999999998999999999999999
Q ss_pred CcCchHHHHhCCCHHHHHHHHccCCCCC--HH-HHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCC
Q 003008 260 SKSNHNILVEAGVIPKLAMLLKANVEGS--KV-IRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELH 335 (858)
Q Consensus 260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~--~~-~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~ 335 (858)
.+.+...+.+.|+++.|+.++....++. .. .--.......+++.. +.... +..+. +++.+.
T Consensus 232 ~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-----~~~p~-~~~~l~--------- 296 (503)
T PF10508_consen 232 TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-----ELYPA-FLERLF--------- 296 (503)
T ss_pred ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH-----HHHHH-HHHHHH---------
Confidence 9999999999999999999997654432 11 111233556666663 22111 12222 222210
Q ss_pred CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008 336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL 415 (858)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~ 415 (858)
..+...+...+..|..++..++.... +-..+. ...+.
T Consensus 297 ---------~~~~s~d~~~~~~A~dtlg~igst~~-------G~~~L~--------~~~~~------------------- 333 (503)
T PF10508_consen 297 ---------SMLESQDPTIREVAFDTLGQIGSTVE-------GKQLLL--------QKQGP------------------- 333 (503)
T ss_pred ---------HHhCCCChhHHHHHHHHHHHHhCCHH-------HHHHHH--------hhcch-------------------
Confidence 01122232344447778887754331 111110 00000
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHh--cCCh-------hhHHHHH---HcCcHH-HHHHhhcCCcHHHHHH
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIADI--SINE-------HMRMLFK---EAGAIK-YLVKLLDHSSDAVRLA 482 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l--~~~~-------~~~~~l~---~~g~i~-~Lv~LL~~~~~~v~~~ 482 (858)
.....+..+-....++..+++..+..++.++ ...+ ......+ ..+-.. .+..+++.+-+++|..
T Consensus 334 ---~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a 410 (503)
T PF10508_consen 334 ---AMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCA 410 (503)
T ss_pred ---HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHH
Confidence 0011344555566677788888899998885 2322 1122222 233444 7788998888999999
Q ss_pred HHHHHHHhhcChhHHHHHHHc-CChHHHH
Q 003008 483 TTHALERLSVSRGVCQIMEAE-GVVHPLV 510 (858)
Q Consensus 483 a~~aL~~Ls~~~~~~~~l~~~-g~i~~Li 510 (858)
+...|..|+..+-..+.+... |.+..|+
T Consensus 411 ~~~~l~~l~~~~Wg~~~i~~~~gfie~ll 439 (503)
T PF10508_consen 411 AYRLLQALAAQPWGQREICSSPGFIEYLL 439 (503)
T ss_pred HHHHHHHHhcCHHHHHHHHhCccHHhhhc
Confidence 999999999976665556554 4444444
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.34 E-value=2.9e-10 Score=139.31 Aligned_cols=273 Identities=17% Similarity=0.125 Sum_probs=196.1
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
.++.|+.+|.++++.+|..|+.+|+.... .++++.|+.+|+++++.||..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-------- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-------- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--------
Confidence 67889999999999999999999999754 568999999999999999999999998885321
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT 581 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~ 581 (858)
...+.|...|.++ ++.++..+..+|..+... ....++..+.++|+.++..++ +|..+
T Consensus 684 -~~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~--------------~~~~l~~~L~D~d~~VR~~Av~aL~~~----- 741 (897)
T PRK13800 684 -PPAPALRDHLGSP--DPVVRAAALDVLRALRAG--------------DAALFAAALGDPDHRVRIEAVRALVSV----- 741 (897)
T ss_pred -CchHHHHHHhcCC--CHHHHHHHHHHHHhhccC--------------CHHHHHHHhcCCCHHHHHHHHHHHhcc-----
Confidence 1235677788743 488999999888887531 134678899999999999988 65532
Q ss_pred chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCcc
Q 003008 582 TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKY 661 (858)
Q Consensus 582 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~ 661 (858)
+..+.|..++.++++.|+..++.+|..+....... +..|. .++.+.+.
T Consensus 742 ---------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~-----------~~~L~--~ll~D~d~---------- 789 (897)
T PRK13800 742 ---------DDVESVAGAATDENREVRIAVAKGLATLGAGGAPA-----------GDAVR--ALTGDPDP---------- 789 (897)
T ss_pred ---------cCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchh-----------HHHHH--HHhcCCCH----------
Confidence 23456788999999999999999998885432211 01111 12222111
Q ss_pred chhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhh
Q 003008 662 ALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINME 741 (858)
Q Consensus 662 ~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 741 (858)
.. +......|..+. .
T Consensus 790 --------------------------------~V------------------R~aA~~aLg~~g----------~----- 804 (897)
T PRK13800 790 --------------------------------LV------------------RAAALAALAELG----------C----- 804 (897)
T ss_pred --------------------------------HH------------------HHHHHHHHHhcC----------C-----
Confidence 00 000111111110 0
Q ss_pred hhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc
Q 003008 742 VTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE 821 (858)
Q Consensus 742 i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~ 821 (858)
....++.++..|.++++.||..|+.+|..+.... .+++|+.+|++++..||..|+.+|..+..++.
T Consensus 805 --~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~------------a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~ 870 (897)
T PRK13800 805 --PPDDVAAATAALRASAWQVRQGAARALAGAAADV------------AVPALVEALTDPHLDVRKAAVLALTRWPGDPA 870 (897)
T ss_pred --cchhHHHHHHHhcCCChHHHHHHHHHHHhccccc------------hHHHHHHHhcCCCHHHHHHHHHHHhccCCCHH
Confidence 0113467888999999999999999998764333 34999999999999999999999988732222
Q ss_pred chHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008 822 NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN 855 (858)
Q Consensus 822 ~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~ 855 (858)
+.+.|..++.+.++.+ ..|..+|+.
T Consensus 871 ---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 3568889999999999 777777763
No 28
>PRK09687 putative lyase; Provisional
Probab=99.26 E-value=5.4e-10 Score=117.31 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=186.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI 226 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 226 (858)
-++.|+.+|.+.+..+|..++++|..+... .+++.+..++.++ ++.++..++++|+.|-..+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~----------~~~~~l~~ll~~~--d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ----------DVFRLAIELCSSK--NPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc----------hHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCCccc----
Confidence 467889999999999999999999988643 3578888899888 999999999999998654432
Q ss_pred HhCCCHHHHHHH-HccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh
Q 003008 227 ANTDILPLLIKS-LEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD 305 (858)
Q Consensus 227 ~~~g~i~~Lv~l-l~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~ 305 (858)
..-.++.|..+ ++++++.|+..++.+|.+++...... ...+++.+...+.+. ...+|..++.+|..+...
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~---~~~VR~~a~~aLg~~~~~- 158 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK---STNVRFAVAFALSVINDE- 158 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC---CHHHHHHHHHHHhccCCH-
Confidence 22356778777 66779999999999999986433211 112344555666543 455899999998766421
Q ss_pred hhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhh
Q 003008 306 YYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGR 385 (858)
Q Consensus 306 ~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~ 385 (858)
.+++ .|+.++ ...+..+++.++.+|..+..+.
T Consensus 159 ---------~ai~-~L~~~L----------------------~d~~~~VR~~A~~aLg~~~~~~---------------- 190 (280)
T PRK09687 159 ---------AAIP-LLINLL----------------------KDPNGDVRNWAAFALNSNKYDN---------------- 190 (280)
T ss_pred ---------HHHH-HHHHHh----------------------cCCCHHHHHHHHHHHhcCCCCC----------------
Confidence 1345 366653 1112245555777776662211
Q ss_pred hhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcH
Q 003008 386 SRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAI 465 (858)
Q Consensus 386 ~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i 465 (858)
...++.|+.+|.+++++|+..|+++|+.+.. ..++
T Consensus 191 -----------------------------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av 225 (280)
T PRK09687 191 -----------------------------------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVL 225 (280)
T ss_pred -----------------------------------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHH
Confidence 1256778899999999999999999999765 5689
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008 466 KYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILG 531 (858)
Q Consensus 466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~ 531 (858)
+.|+..|.+++ ++..++.+|+++... .++|.|..++.... |..++..+.++|.
T Consensus 226 ~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 226 SVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCC-ChhHHHHHHHHHh
Confidence 99999999876 678899999999852 36899999997333 5888888877764
No 29
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.25 E-value=3.5e-09 Score=116.37 Aligned_cols=465 Identities=16% Similarity=0.095 Sum_probs=284.6
Q ss_pred cccCCCcHHHHHHHhcCCCCH--HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHh
Q 003008 97 STFGDSYVALFVQMLGLDYDP--LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES-SAACEAAAGLLRSI 173 (858)
Q Consensus 97 ~~~~~g~i~~lv~lL~~s~d~--~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~-~~~~~~a~~aL~nL 173 (858)
...+.|+++.+..+++ ..|. ..+......+..+...+...+..+. +.+.++.|.++|.+.+ ..+++..++.++++
T Consensus 46 ~~ik~GAv~~Ll~L~s-~e~~s~~~k~~~~~llns~f~~eqd~v~svL-~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~I 123 (678)
T KOG1293|consen 46 TNIKLGAVELLLALLS-LEDGSTELKNGFAVLLNSLFLGEQDKVDSVL-RIIELLKLLQLLSESDSLNVLEKTLRCLRTI 123 (678)
T ss_pred hhhhhcchHHHHhhcc-ccCCchhhhhhHHHHHHhHHhhccchHHHHH-HHhhHHHHHHHhcCcchHhHHHHHHHHHHHH
Confidence 3467899999999996 5543 4444455555666666665566666 7999999999999988 77888999999999
Q ss_pred hcCch---hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008 174 SSINV---YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAA 250 (858)
Q Consensus 174 s~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a 250 (858)
-.... .....-....++.+..++..+ .....+.-+....++|+..+++..+...|..+.+.-++...+...|..|
T Consensus 124 fet~~~q~~~~s~~~~sIi~~~s~l~s~~--lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~Rlaa 201 (678)
T KOG1293|consen 124 FETSKYQDKKMSLHLKSIIVKFSLLYSIE--LKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAA 201 (678)
T ss_pred HhcccccccchhhhHHHHHHHHHHHHhhh--hhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHH
Confidence 66543 333333344566666666644 6677777778888889888888888899999998888877788999999
Q ss_pred HHHHH---HHcCCcCch-H----HHHhCCCHHH-HHH-HHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008 251 GGVLA---NLALSKSNH-N----ILVEAGVIPK-LAM-LLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVP 320 (858)
Q Consensus 251 ~~~L~---nL~~~~~~~-~----~i~~~g~i~~-Lv~-ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~ 320 (858)
..+++ ++..+++.. . .+...|..+. .+. +++++... .+..++.+|..+..-..+.. +
T Consensus 202 L~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s---~~l~sl~cl~~~~~~s~~~d----------~ 268 (678)
T KOG1293|consen 202 LLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS---ERLRSLECLVPYLRKSFNYD----------P 268 (678)
T ss_pred HHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc---HHHHHHHHHHHHHhcccccc----------c
Confidence 99999 777665332 2 2344555542 444 56555332 34566666666654211110 1
Q ss_pred cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008 321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE 400 (858)
Q Consensus 321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~ 400 (858)
+.-.. .+ .+-|.+ .-.++.+. .+.|- +.-...+.... +-+ .+++...
T Consensus 269 l~~~~---~~---------~dmgd~------~i~q~~~i-~l~~~---P~~s~l~~~~~--l~c-----~~a~~~s---- 315 (678)
T KOG1293|consen 269 LPWWF---IF---------FDMGDS------LIVQYNCI-VLMND---PGLSTLDHTNV--LFC-----ILARFAS---- 315 (678)
T ss_pred cccce---ee---------ccCchH------HHHHHhhh-eeecC---Cceeehhhhhh--hHH-----HHHHHHH----
Confidence 11100 00 000000 00000000 00000 00000000000 000 0000000
Q ss_pred CCCCCCCCCCcccccccccccccHHHHHHHh------CCCCHHHHHHHHH---HHHHhcC--ChhhHHHHHHcCcHHHHH
Q 003008 401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLIL------GLEDERAIARAAE---SIADISI--NEHMRMLFKEAGAIKYLV 469 (858)
Q Consensus 401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL------~~~~~~v~~~a~~---aL~~l~~--~~~~~~~l~~~g~i~~Lv 469 (858)
+.+ ..-..+...+..++++ ...+++.+.-++. .+...+. .-..++.+.+.-....+.
T Consensus 316 -----------klq-~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~ 383 (678)
T KOG1293|consen 316 -----------KLQ-LPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLM 383 (678)
T ss_pred -----------hhh-hHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHc
Confidence 000 0000001222222222 1223333222111 1111221 234455566555556666
Q ss_pred HhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc-cccccc
Q 003008 470 KLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK-SKFYDI 547 (858)
Q Consensus 470 ~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~i~ 547 (858)
.+....+.+++.+++.++.+++.+ ...|.-+....++.+|++++.+|+ ..++..+.++|+|+.- ++. .|..+.
T Consensus 384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~--~~i~~~~lgai~NlVm---efs~~kskfl 458 (678)
T KOG1293|consen 384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPE--IMIMGITLGAICNLVM---EFSNLKSKFL 458 (678)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcc--hhHHHHHHHHHHHHHh---hcccHHHHHH
Confidence 666677889999999999999873 555666777789999999998777 7888899999999987 555 455688
Q ss_pred cCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc-hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008 548 PVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT-SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM 625 (858)
Q Consensus 548 ~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~-~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~ 625 (858)
..||++.+.+++.++|+.++.++. +++++....+. ++......-....++.+.+++++.||+.|...|+|+.++....
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 899999999999999999999999 99998754332 2133333333467888999999999999999999999876544
Q ss_pred HHH
Q 003008 626 DTI 628 (858)
Q Consensus 626 ~~~ 628 (858)
..+
T Consensus 539 vdf 541 (678)
T KOG1293|consen 539 VDF 541 (678)
T ss_pred HHH
Confidence 333
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.25 E-value=4.4e-08 Score=114.69 Aligned_cols=500 Identities=20% Similarity=0.188 Sum_probs=292.5
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008 105 ALFVQMLGLDY--DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 105 ~~lv~lL~~s~--d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
..+.+.++ +. +...+..++.-|..+...+.+ + ..+.+.+++++.+.+.+.+.-+--++..+...++....
T Consensus 7 ~el~~~~~-~~~~~~~~~~~~l~kli~~~~~G~~-----~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~ 78 (526)
T PF01602_consen 7 QELAKILN-SFKIDISKKKEALKKLIYLMMLGYD-----I--SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI 78 (526)
T ss_dssp HHHHHHHH-CSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCC-----C--chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH
Confidence 34556665 44 556666666666555543333 1 35667788888888988888777777777765543222
Q ss_pred HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC
Q 003008 183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS 262 (858)
Q Consensus 183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~ 262 (858)
+ ++..+.+=|.++ ++.++..|+++|.+++. ++-... .++.+.+++.++++.+|..|+.++..+.....
T Consensus 79 l----~~n~l~kdl~~~--n~~~~~lAL~~l~~i~~-~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 79 L----IINSLQKDLNSP--NPYIRGLALRTLSNIRT-PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp H----HHHHHHHHHCSS--SHHHHHHHHHHHHHH-S-HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH
T ss_pred H----HHHHHHHhhcCC--CHHHHHHHHhhhhhhcc-cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCH
Confidence 2 467777778887 99999999999999883 222222 36788888999999999999999998875422
Q ss_pred chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD 342 (858)
Q Consensus 263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~ 342 (858)
. .+... .++.+.+++.+. .+.++..|+.++..+-.+++... ..++
T Consensus 147 ~--~~~~~-~~~~l~~lL~d~---~~~V~~~a~~~l~~i~~~~~~~~-----~~~~------------------------ 191 (526)
T PF01602_consen 147 D--LVEDE-LIPKLKQLLSDK---DPSVVSAALSLLSEIKCNDDSYK-----SLIP------------------------ 191 (526)
T ss_dssp C--CHHGG-HHHHHHHHTTHS---SHHHHHHHHHHHHHHHCTHHHHT-----THHH------------------------
T ss_pred H--HHHHH-HHHHHhhhccCC---cchhHHHHHHHHHHHccCcchhh-----hhHH------------------------
Confidence 1 11222 577888888554 35577777777777711111000 0000
Q ss_pred cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008 343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID 422 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 422 (858)
.
T Consensus 192 -------------------------------------------------------------------------------~ 192 (526)
T PF01602_consen 192 -------------------------------------------------------------------------------K 192 (526)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
.+..|..++...++..+....+.|...+. .++.... ...++.+..++++.++.|...|+.++..+..++. .
T Consensus 193 ~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~ 264 (526)
T PF01602_consen 193 LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----L 264 (526)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----H
T ss_pred HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----H
Confidence 12223344455666677777777776543 2222211 4566777777777777777777777777776544 2
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHHHH-HHHHhhcc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VIEAAVSE 579 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l~~L~~~ 579 (858)
-..+++.|..++.+++ ..++..+..+|..++.. .. ..+. .....+..+. ++|+.++..++ .+..++..
T Consensus 265 ~~~~~~~L~~lL~s~~--~nvr~~~L~~L~~l~~~---~~--~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 265 LQKAINPLIKLLSSSD--PNVRYIALDSLSQLAQS---NP--PAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHCCH---CH--HHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred HHhhHHHHHHHhhccc--chhehhHHHHHHHhhcc---cc--hhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 2235677777776333 66777777777777762 10 0111 1222233334 67788888888 77777654
Q ss_pred ccchhhhHhhccchhHHHHhh-cCCCHHHHHHHHHHHHHhhcCCcc-hHHHHhhchHHHHHHHHHhhhccCCCCCcCCCC
Q 003008 580 TTTSYGKVLDSVFIGRMIGIM-KTSYPDLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQ 657 (858)
Q Consensus 580 ~~~~~~~i~~~g~i~~L~~lL-~s~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~ 657 (858)
.... ..++.|...+ ...+++++..++..+..++..... ...+ +..++ +
T Consensus 335 ~n~~-------~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~--------v~~l~--~------------- 384 (526)
T PF01602_consen 335 SNVK-------EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWY--------VDTLL--K------------- 384 (526)
T ss_dssp HHHH-------HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHH--------HHHHH--H-------------
T ss_pred cchh-------hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHH--------HHHHH--H-------------
Confidence 4433 2467778888 455888999999999888753321 1111 22222 1
Q ss_pred CCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCcc
Q 003008 658 PEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENP 737 (858)
Q Consensus 658 ~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 737 (858)
++..... .-...++..+..++.. .| +.
T Consensus 385 ------------------------ll~~~~~---~~~~~~~~~i~~ll~~-~~-------------------------~~ 411 (526)
T PF01602_consen 385 ------------------------LLEISGD---YVSNEIINVIRDLLSN-NP-------------------------EL 411 (526)
T ss_dssp ------------------------HHHCTGG---GCHCHHHHHHHHHHHH-ST-------------------------TT
T ss_pred ------------------------hhhhccc---cccchHHHHHHHHhhc-Ch-------------------------hh
Confidence 1111110 0111122222222210 00 00
Q ss_pred chhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008 738 INMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816 (858)
Q Consensus 738 ~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL 816 (858)
...++..+++.+. ..+++++..++|.++....... +.. .-...++.+++.....++.+|...+.++..+
T Consensus 412 ------~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~--~~~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 412 ------REKILKKLIELLEDISSPEALAAAIWILGEYGELIE--NTE--SAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp ------HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT--TTT--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc--ccc--cHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 1235788888887 6888999999999988654321 100 0011124444445566788999999999998
Q ss_pred hcCcc---chHHHHHcCchHHHHHhhh--cCChhH-HHHHHHHh
Q 003008 817 SMDSE---NHSAIIAAGAVPALRRIVL--SQRPQW-TRALRLLR 854 (858)
Q Consensus 817 ~~~~~---~~~~i~~~g~v~~L~~ll~--~~~~~~-~~al~~l~ 854 (858)
....+ ... -+...+..+.. +.++++ ++|...++
T Consensus 482 ~~~~~~~~~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 482 FKRNPENEVQN-----EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHSCSTTHHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HhhCCchhhHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 65433 222 23557777777 889999 88887554
No 31
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.21 E-value=9.9e-09 Score=112.88 Aligned_cols=449 Identities=15% Similarity=0.088 Sum_probs=262.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCc-hhHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSIN-VYRD 181 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~-~~~~ 181 (858)
..+..++ ..|++....++.-..|++.+...++..++ +.|+++.+..+++.. .++.....+.++..+...+ +...
T Consensus 13 ~~l~~L~--~~dpe~lvrai~~~kN~vig~~~~K~~~i-k~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~ 89 (678)
T KOG1293|consen 13 DLLYRLL--HLDPEQLVRAIYMSKNLVIGFTDNKETNI-KLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVD 89 (678)
T ss_pred HHHHhhh--cCCHHHHHHHHHHhcchhhcCCCccchhh-hhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHH
Confidence 3344454 57778888899999999887777666677 799999999998765 4556656777777776654 6888
Q ss_pred HHHhcCcHHHHHHHhcCCCCC-HHHHHHHHHHHHHhccCcch---HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 182 LVAECGAIEEITGLLTRPSLT-SEVKEQSMCTLWNLSVDKKH---RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~-~~~~~~a~~~L~nLs~~~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
.+.+.+.++.|.+++... | ..+++.+++.+.++-..... ....-....+..+.-+...+.+.....-+-...++
T Consensus 90 svL~~~~ll~Ll~LLs~s--D~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~ 167 (678)
T KOG1293|consen 90 SVLRIIELLKLLQLLSES--DSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHL 167 (678)
T ss_pred HHHHHhhHHHHHHHhcCc--chHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccc
Confidence 899999999999999998 7 67889999999998655433 23332444455554444435555556666666777
Q ss_pred cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH---HHhcCh-hhHH----HHHHcCCccc-ccccccccc
Q 003008 258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI---ELAKDD-YYRI----LIIEEGLVPV-PMVGADAYK 328 (858)
Q Consensus 258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~---nl~~~~-~~~~----~i~~~g~v~~-~Lv~ll~~~ 328 (858)
+...+.+..+..+|+.+.+.-++... +-..|..|...+. ++..++ .... ...+.|..+. ..-+
T Consensus 168 s~~~~hq~Il~Na~i~ekI~~l~~~~---s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~r----- 239 (678)
T KOG1293|consen 168 SSTKDHQLILCNAGILEKINILLMYL---SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTR----- 239 (678)
T ss_pred cccchhhheeccccchhhHHHHHHhh---hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhh-----
Confidence 77787777888889888887776543 2237778888887 555543 2221 1222333321 0111
Q ss_pred cCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCC
Q 003008 329 SFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSE 408 (858)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~ 408 (858)
+.+..+...+-.++.++.+. .+.+..
T Consensus 240 -----------------L~k~~~~s~~l~sl~cl~~~--------------------------~~~s~~----------- 265 (678)
T KOG1293|consen 240 -----------------LLKDPDFSERLRSLECLVPY--------------------------LRKSFN----------- 265 (678)
T ss_pred -----------------hhhCCCccHHHHHHHHHHHH--------------------------Hhcccc-----------
Confidence 11111111121222223222 111100
Q ss_pred CCccccccc-cccccc-----HHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcC------C
Q 003008 409 FPIDRQLTL-LPWIDG-----VARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDH------S 475 (858)
Q Consensus 409 ~~~~~~~~~-l~~~~~-----i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~------~ 475 (858)
.+..+.. +..+.+ .-..+.+...|-......++..-+..+ .-+..+....+...++.+..++.- .
T Consensus 266 --~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~ 343 (678)
T KOG1293|consen 266 --YDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAAS 343 (678)
T ss_pred --ccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhc
Confidence 0000000 000000 000111112221111122222222222 223344455566666666666542 2
Q ss_pred cHHHHHHHH---HHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc-cccccccC
Q 003008 476 SDAVRLATT---HALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK-SKFYDIPV 549 (858)
Q Consensus 476 ~~~v~~~a~---~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~i~~~ 549 (858)
.++.+.-++ ..+...+. .-.+++.+.+.-....+..+. +..|......++.|+.+++.. .. .+...-..
T Consensus 344 ~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~--~~kd~~~~aaa~l~~~s~srs---V~aL~tg~~~~ 418 (678)
T KOG1293|consen 344 DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP--PIKDHDFVAAALLCLKSFSRS---VSALRTGLKRN 418 (678)
T ss_pred chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc--ccccHHHHHHHHHHHHHHHHH---HHHHHcCCccc
Confidence 222222211 12222222 123344444433333333333 344577788888888777651 11 11113446
Q ss_pred cCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 003008 550 NGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDT 627 (858)
Q Consensus 550 ~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~ 627 (858)
++..+++.++..++..+...++ +|+|++-++.+-+..+++.|+|..+...+.+.++..+..++|+|+++..+.+....
T Consensus 419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 7899999999888888888888 99999876655448899999999999999999999999999999998766655443
No 32
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.19 E-value=2.8e-09 Score=116.21 Aligned_cols=348 Identities=13% Similarity=0.116 Sum_probs=233.3
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHh----cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQF----SGCINLTVNLLRSESSAACEAAAGLLRSISSI 176 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~----~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~ 176 (858)
...+..++++|+.....++..+.+.-+..+....+.....+... .+....++.+|..++.-+...++..|..|...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 56778899999766777888888888888887766654344421 35678889999999989999999999999643
Q ss_pred c-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHH
Q 003008 177 N-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGV 253 (858)
Q Consensus 177 ~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~ 253 (858)
. .........-...-+...++++. +...+..++.+|.+|...+..|..+.+.++++.|+.+|+.. +..++.+++-+
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 2 21111110112344556666542 56778888999999999999999999888999999999864 45788999999
Q ss_pred HHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-------hhHHHHHHcCCcccccccccc
Q 003008 254 LANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-------YYRILIIEEGLVPVPMVGADA 326 (858)
Q Consensus 254 L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-------~~~~~i~~~g~v~~~Lv~ll~ 326 (858)
++-|++.++....+.+.+.|+.|+++++... -+++.+-++.+|.||...+ .....+++.|..+ +++.+.
T Consensus 211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~--KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~--~l~~L~ 286 (429)
T cd00256 211 IWLLTFNPHAAEVLKRLSLIQDLSDILKEST--KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK--TLQSLE 286 (429)
T ss_pred HHHHhccHHHHHhhccccHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH--HHHHHh
Confidence 9999999887777777899999999997642 2457788999999999832 2445778888777 455442
Q ss_pred cccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHH--HHhhcccccCCCC
Q 003008 327 YKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFL--VRIGAIESEDGRK 404 (858)
Q Consensus 327 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L--~~~~~~~~~~~~~ 404 (858)
.+.++. +...+....|...- +..++.+-. =.++. +.+|..+
T Consensus 287 ~rk~~D--------------------edL~edl~~L~e~L---------~~~~k~lts--fD~Y~~El~sg~L~------ 329 (429)
T cd00256 287 QRKYDD--------------------EDLTDDLKFLTEEL---------KNSVQDLSS--FDEYKSELRSGRLH------ 329 (429)
T ss_pred cCCCCc--------------------HHHHHHHHHHHHHH---------HHHHHHcCC--HHHHHHHHhcCCcc------
Confidence 222211 11111111111100 000000000 00000 0111000
Q ss_pred CCCCCCccccc-----ccccccc--cHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCC
Q 003008 405 PQSEFPIDRQL-----TLLPWID--GVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHS 475 (858)
Q Consensus 405 ~~l~~~~~~~~-----~~l~~~~--~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~ 475 (858)
=.-.+.+..| ..+-..+ .++.|+.+| ++.|+.+..-||.=++... ..|+.|..+-+.|+=..++.|+.++
T Consensus 330 -WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~ 408 (429)
T cd00256 330 -WSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE 408 (429)
T ss_pred -CCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC
Confidence 0000111112 1111222 678899999 4678899999999999955 6788888888999999999999999
Q ss_pred cHHHHHHHHHHHHHhh
Q 003008 476 SDAVRLATTHALERLS 491 (858)
Q Consensus 476 ~~~v~~~a~~aL~~Ls 491 (858)
+++||.+|..|+..|-
T Consensus 409 d~~Vr~eAL~avQklm 424 (429)
T cd00256 409 DPNVRYEALLAVQKLM 424 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999998774
No 33
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=4.8e-10 Score=102.66 Aligned_cols=114 Identities=27% Similarity=0.355 Sum_probs=105.7
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-
Q 003008 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK- 221 (858)
Q Consensus 144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~- 221 (858)
+.|+++.+++++.+++...+..++++|.+++.. ++.+..+.+.|+++.++++++++ ++.++..++++|+||+.++.
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHH
Confidence 799999999999999999999999999999987 57888899999999999999997 99999999999999998774
Q ss_pred hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 222 HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 222 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
.+..+.+.|+++.|++++..++.++++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 56777789999999999999999999999999999873
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.14 E-value=1.9e-09 Score=117.46 Aligned_cols=313 Identities=15% Similarity=0.098 Sum_probs=208.6
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHh-cCChhhHHHHHHcCcHHHHHHhhcCC-cHHHHHHHHHHHHHhhcChhHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHS-SDAVRLATTHALERLSVSRGVCQIM 500 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~~g~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~l 500 (858)
...+++.+|+.+|..++..++..|..+ +............-....|...+++. +...+..++.+|..|...++.|..+
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 567788899999999999999999994 43333222111122445666777654 4777888889999999999999999
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET 580 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~ 580 (858)
.+.++++.|+.+|+....+.+++..+..|+|-++.. ..
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~---~~--------------------------------------- 219 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN---PH--------------------------------------- 219 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc---HH---------------------------------------
Confidence 999999999999985444678999999999999871 11
Q ss_pred cchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcc---hHHHHhhchHHHHHHHHHhhhccCCCCCcCCC
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPS---MDTIISADIESGLDAIFQQKALEDTDSDIEGR 656 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~ 656 (858)
.. ..+.+.+.|+.|+++++.. -..+.+-++.+|.|+...+.. ...+...-...|+..++ ..|....|++++.
T Consensus 220 -~~-~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l--~~L~~rk~~DedL 295 (429)
T cd00256 220 -AA-EVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTL--QSLEQRKYDDEDL 295 (429)
T ss_pred -HH-HhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHH--HHHhcCCCCcHHH
Confidence 11 3334467889999999754 456889999999999874321 11111111333566666 7788888877766
Q ss_pred CCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCc--hhhHHHHHHHhhcccCCCCCCC
Q 003008 657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLH--YKDWVAACLVKLSCLSGPDQDF 734 (858)
Q Consensus 657 ~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~ 734 (858)
.+|+..+.- .-......+-+|+++....... .+ .+.|.+ .+-|.+.+ .++
T Consensus 296 ~edl~~L~e--------~L~~~~k~ltsfD~Y~~El~sg--------~L-~WSp~H~se~FW~EN~-~kf---------- 347 (429)
T cd00256 296 TDDLKFLTE--------ELKNSVQDLSSFDEYKSELRSG--------RL-HWSPVHKSEKFWRENA-DRL---------- 347 (429)
T ss_pred HHHHHHHHH--------HHHHHHHHcCCHHHHHHHHhcC--------Cc-cCCCCCCCchHHHHHH-HHH----------
Confidence 555444211 0112223445565553221111 11 133333 23332221 011
Q ss_pred CccchhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHH
Q 003008 735 ENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAIL 813 (858)
Q Consensus 735 ~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 813 (858)
. .-+...+..|+++|. +.++.+..-||.=++.++...+. ....+-+.|+=..+++++++++++||..|+.|+
T Consensus 348 ----~--~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~av 420 (429)
T cd00256 348 ----N--EKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAV 420 (429)
T ss_pred ----H--hcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 012345789999995 77888888899999998877754 555677889988899999999999999999998
Q ss_pred Hhh
Q 003008 814 YNL 816 (858)
Q Consensus 814 ~nL 816 (858)
-.|
T Consensus 421 Qkl 423 (429)
T cd00256 421 QKL 423 (429)
T ss_pred HHH
Confidence 654
No 35
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.10 E-value=1.6e-09 Score=99.26 Aligned_cols=117 Identities=32% Similarity=0.430 Sum_probs=104.4
Q ss_pred HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
.+.+.|+++.++++++++ ++.+++.++++|.+++.+ ++.+..+.+.|+++.+++++.++++.++..++++|.|++..
T Consensus 2 ~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 467889999999999998 899999999999999987 77888889999999999999999999999999999999988
Q ss_pred cC-chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 261 KS-NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 261 ~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
.. .+..+.+.|+++.|++++..+ ...+++.+..+|++|+.
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~---~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSS---NEDIQKNATGALSNLAS 120 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcC---CHHHHHHHHHHHHHhhC
Confidence 64 455678889999999999775 34588999999999973
No 36
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.10 E-value=1e-07 Score=111.63 Aligned_cols=396 Identities=16% Similarity=0.160 Sum_probs=236.0
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
-+.+.+++++. +.|...+.-+..++..+...+... .++ ++..+.+-|.++++.++..|+++|.++... +..+
T Consensus 42 ~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~--~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~-~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPEL--LIL----IINSLQKDLNSPNPYIRGLALRTLSNIRTP-EMAE 113 (526)
T ss_dssp STHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHH--HHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH-HHHH
T ss_pred hHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhH--HHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhccc-chhh
Confidence 45567888887 888888888877777777655541 222 567777888999999999999999998843 3222
Q ss_pred HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
. .++.+.+++.++ ++.+|+.|+.++..+... ++. +... .++.+.+++.+.++.++..|+.++..+...
T Consensus 114 ~-----l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 114 P-----LIPDVIKLLSDP--SPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp H-----HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred H-----HHHHHHHHhcCC--chHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 2 478889999998 999999999999998743 332 1122 589999999999999999999999999111
Q ss_pred cCchHHHHhCCCHHHHHHHHccC-CCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008 261 KSNHNILVEAGVIPKLAMLLKAN-VEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP 338 (858)
Q Consensus 261 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~ 338 (858)
+. . .. ..++.++..|..- ...++-.+..+++.|..++.. +..... ...+. .+..++
T Consensus 183 ~~--~-~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~-~l~~~l------------- 240 (526)
T PF01602_consen 183 DD--S-YK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIE-PLLNLL------------- 240 (526)
T ss_dssp HH--H-HT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHH-HHHHHH-------------
T ss_pred cc--h-hh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHH-HHHHHh-------------
Confidence 11 1 00 3344444433210 112455777777777777763 332211 11222 133321
Q ss_pred CCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccc
Q 003008 339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL 418 (858)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l 418 (858)
+..+..+..+++.++..+.... .
T Consensus 241 ---------~s~~~~V~~e~~~~i~~l~~~~----------------------------------------------~-- 263 (526)
T PF01602_consen 241 ---------QSSSPSVVYEAIRLIIKLSPSP----------------------------------------------E-- 263 (526)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHSSSH----------------------------------------------H--
T ss_pred ---------hccccHHHHHHHHHHHHhhcch----------------------------------------------H--
Confidence 1111233444444444432111 0
Q ss_pred cccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHH
Q 003008 419 PWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQ 498 (858)
Q Consensus 419 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~ 498 (858)
....++++|+.+|.++++.++..++..|..++... ...+. ..-..+..+..+++..+|..+...|.+++.... ..
T Consensus 264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-~~ 338 (526)
T PF01602_consen 264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN-VK 338 (526)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-HH
T ss_pred HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh--hhhhhhheecCCCChhHHHHHHHHHhhcccccc-hh
Confidence 11225677888888888888888888888866433 11222 222223333347778888888888888885332 22
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV 577 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~ 577 (858)
. .++.|...+... .+.++++.+...+..++. ...... .-.++.+++++...+..+...+. .+.++.
T Consensus 339 ~-----Il~eL~~~l~~~-~d~~~~~~~i~~I~~la~---~~~~~~----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll 405 (526)
T PF01602_consen 339 E-----ILDELLKYLSEL-SDPDFRRELIKAIGDLAE---KFPPDA----EWYVDTLLKLLEISGDYVSNEIINVIRDLL 405 (526)
T ss_dssp H-----HHHHHHHHHHHC---HHHHHHHHHHHHHHHH---HHGSSH----HHHHHHHHHHHHCTGGGCHCHHHHHHHHHH
T ss_pred h-----HHHHHHHHHHhc-cchhhhhhHHHHHHHHHh---ccCchH----HHHHHHHHHhhhhccccccchHHHHHHHHh
Confidence 2 356666666322 236688888888877775 221110 11356677777766555555555 566555
Q ss_pred ccccchhhhHhhccchhHHHHhhcC-CCHHHHHHHHHHHHHh
Q 003008 578 SETTTSYGKVLDSVFIGRMIGIMKT-SYPDLQRKAASILEFI 618 (858)
Q Consensus 578 ~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l 618 (858)
...... ....+..|++++.+ .++.+...++|+++..
T Consensus 406 ~~~~~~-----~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy 442 (526)
T PF01602_consen 406 SNNPEL-----REKILKKLIELLEDISSPEALAAAIWILGEY 442 (526)
T ss_dssp HHSTTT-----HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHH
T ss_pred hcChhh-----hHHHHHHHHHHHHHhhHHHHHHHHHhhhccc
Confidence 433221 01235566666654 4555666666666554
No 37
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1.3e-07 Score=110.86 Aligned_cols=459 Identities=16% Similarity=0.138 Sum_probs=255.8
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc-h
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN-V 178 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~-~ 178 (858)
...++.|..++.++.|+++|.-|+--++++...-......-. +.-.-..|+....++ .+.+|..-+.++..++.+. +
T Consensus 35 ~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~-~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~ 113 (1075)
T KOG2171|consen 35 EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV-QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLP 113 (1075)
T ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 337888999998788999999988788877654222211222 233345555555544 6778888999999998865 2
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
. ...+.++.|.+..+++ ++..++.|..+|+++...-++ +..+ ....+.+.+.+..++..++..+++++..
T Consensus 114 e----~WPell~~L~q~~~S~--~~~~rE~al~il~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a 185 (1075)
T KOG2171|consen 114 E----KWPELLQFLFQSTKSP--NPSLRESALLILSSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGA 185 (1075)
T ss_pred c----chHHHHHHHHHHhcCC--CcchhHHHHHHHHhhhhhhccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 2 3456789999999998 999999999999999754333 3322 1234455555666655599999999998
Q ss_pred HcCCc-CchHHHHhC-CCHHHHHHHHcc----CCCCCHHHHHHHHHHHHHHhcC-hhh--------------------HH
Q 003008 257 LALSK-SNHNILVEA-GVIPKLAMLLKA----NVEGSKVIRKEARNALIELAKD-DYY--------------------RI 309 (858)
Q Consensus 257 L~~~~-~~~~~i~~~-g~i~~Lv~ll~~----~~~~~~~~~~~a~~aL~nl~~~-~~~--------------------~~ 309 (858)
++... .++...... ..+|.++..+.. ++++ .-..+..+|-.+... +.. ..
T Consensus 186 ~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~---~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~ 262 (1075)
T KOG2171|consen 186 FAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD---AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELE 262 (1075)
T ss_pred HHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchH---HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccccc
Confidence 87654 333322221 235555554432 2211 112333333333321 110 11
Q ss_pred HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhc----cCCCC--CCcc-chHH--HHh
Q 003008 310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLG----LNVSD--KNAN-IDEA--KMN 380 (858)
Q Consensus 310 ~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~n----L~~~~--~~~~-i~~~--~~~ 380 (858)
..++.-++. .++.+..+ -|. ..|... +-.....-.+.. +..++ .|.+ .++. ..+
T Consensus 263 ~~~R~~ALe-~ivs~~e~------------Ap~---~~k~~~-~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~ 325 (1075)
T KOG2171|consen 263 NSIRHLALE-FLVSLSEY------------APA---MCKKLA-LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETP 325 (1075)
T ss_pred HHHHHHHHH-HHHHHHHh------------hHH---Hhhhch-hhhccHHHHHHHhcCCcccchhhccccccccccccCc
Confidence 112222222 13322100 000 111111 111111111212 21110 0100 1111 111
Q ss_pred hhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHH
Q 003008 381 AMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLF 459 (858)
Q Consensus 381 ~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l 459 (858)
..++ .+.+-|... .-+++.. -.-.++.+-.+|.++++.-|..+..+|+-++ ++.+.-...
T Consensus 326 ~~~A---~~~lDrlA~-----------~L~g~~v-----~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~ 386 (1075)
T KOG2171|consen 326 YRAA---EQALDRLAL-----------HLGGKQV-----LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN 386 (1075)
T ss_pred HHHH---HHHHHHHHh-----------cCChhhe-----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 1111 111222210 0011111 0113455667889999999999999999965 666655443
Q ss_pred HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008 460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS 537 (858)
Q Consensus 460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~ 537 (858)
. ...++..+..|.++++.||.+|+.|++-++. .++..+. ..+-.++.|+..+. ......++.+|+.++-|++..+
T Consensus 387 l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld-~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 387 L-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLD-STQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred H-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhc-ccCchHHHHHHHHHHHHHHHhC
Confidence 3 5678888999999999999999999999998 3443333 34456778888887 4445789999999999998722
Q ss_pred cccccccccccC--cCcH-HHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhh--ccchhHHHHhhcCCC-HHHHHH
Q 003008 538 KEMKSKFYDIPV--NGSE-KGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLD--SVFIGRMIGIMKTSY-PDLQRK 610 (858)
Q Consensus 538 ~~~~~~~~i~~~--~~i~-~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~--~g~i~~L~~lL~s~~-~~v~~~ 610 (858)
. +..+.+. +.+. .+..++.++.+.++..++ +|...+...+. .+.. .-.+|.|..+|.+.+ .+.+..
T Consensus 464 ---~-~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~---~F~pY~d~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 464 ---D-KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE---KFIPYFDRLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred ---c-HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh---hhHhHHHHHHHHHHHHHhCCCchhhHHH
Confidence 2 1111111 1222 233355667788888888 88776643332 2222 235688888887655 344333
Q ss_pred HHHHHHH
Q 003008 611 AASILEF 617 (858)
Q Consensus 611 a~~~L~~ 617 (858)
..+++.+
T Consensus 537 rgktmEc 543 (1075)
T KOG2171|consen 537 RGKTMEC 543 (1075)
T ss_pred HhhHHHH
Confidence 3333333
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=98.95 E-value=3.7e-05 Score=90.76 Aligned_cols=400 Identities=14% Similarity=0.094 Sum_probs=249.9
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHH-HHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVE-ALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY 179 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~-~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~ 179 (858)
.|-+..|-+.|. +.+...+..+++ .+..++.+.+. ....+.+++++.+.+.+.|.-..-.|.+.+..++.
T Consensus 31 kge~~ELr~~L~-s~~~~~kk~alKkvIa~mt~G~Dv--------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe 101 (746)
T PTZ00429 31 RGEGAELQNDLN-GTDSYRKKAAVKRIIANMTMGRDV--------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE 101 (746)
T ss_pred cchHHHHHHHHH-CCCHHHHHHHHHHHHHHHHCCCCc--------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH
Confidence 566777888887 766666666665 55666665442 23456777889999999999888888888774432
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
...+ ++..+.+=+.++ |+.++-.|+++|+++-... +++ -.++++.+.+.+.++-||..|+-++.++..
T Consensus 102 lalL----aINtl~KDl~d~--Np~IRaLALRtLs~Ir~~~-----i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 102 KALL----AVNTFLQDTTNS--SPVVRALAVRTMMCIRVSS-----VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHHH----HHHHHHHHcCCC--CHHHHHHHHHHHHcCCcHH-----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 2222 477888888887 9999999999998865522 211 235677788888999999999999999976
Q ss_pred CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS 339 (858)
Q Consensus 260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~ 339 (858)
.+. ..+.+.|.++.|.++|... .+.+..+|+.+|..++.....+-. ...+.+.. |+..+
T Consensus 170 ~~p--elv~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~-Ll~~L-------------- 228 (746)
T PTZ00429 170 DDM--QLFYQQDFKKDLVELLNDN---NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNR-LVYHL-------------- 228 (746)
T ss_pred hCc--ccccccchHHHHHHHhcCC---CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHH-HHHHh--------------
Confidence 433 2334567888999988654 445888999999999864221111 11111221 22211
Q ss_pred CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008 340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP 419 (858)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 419 (858)
...+.+.+.....+|....-.+ +. .
T Consensus 229 --------~e~~EW~Qi~IL~lL~~y~P~~------------------------------------------~~---e-- 253 (746)
T PTZ00429 229 --------PECNEWGQLYILELLAAQRPSD------------------------------------------KE---S-- 253 (746)
T ss_pred --------hcCChHHHHHHHHHHHhcCCCC------------------------------------------cH---H--
Confidence 0111133333333332210000 00 0
Q ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--hhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhH
Q 003008 420 WIDGVARLVLILGLEDERAIARAAESIADISIN--EHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV 496 (858)
Q Consensus 420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~ 496 (858)
....+..+...|++.++.|...|++++.++... ++....+. .....+|+.|+ ++++++|..+...+.-+.. .+
T Consensus 254 ~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P-- 329 (746)
T PTZ00429 254 AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIFP-- 329 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH--
Confidence 012566677888999999999999999997643 22222211 22346777775 5678899998888777765 32
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
..+... +..+.-. .+++..++.....+|..++.. .... ..+.-|..+..+.|.+....++ ++..
T Consensus 330 -~lf~~~--~~~Ff~~---~~Dp~yIK~~KLeIL~~Lane---~Nv~------~IL~EL~eYa~d~D~ef~r~aIrAIg~ 394 (746)
T PTZ00429 330 -NLLRTN--LDSFYVR---YSDPPFVKLEKLRLLLKLVTP---SVAP------EILKELAEYASGVDMVFVVEVVRAIAS 394 (746)
T ss_pred -HHHHHH--HHhhhcc---cCCcHHHHHHHHHHHHHHcCc---ccHH------HHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 222221 2222222 334456899999999999872 1111 1245666777778888888888 8888
Q ss_pred hhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 576 AVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 576 L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
++...... -...+..|+++++.... +...++.++.++....
T Consensus 395 lA~k~~~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 395 LAIKVDSV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKY 435 (746)
T ss_pred HHHhChHH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHC
Confidence 87543321 12356778888876544 3445677776665433
No 39
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=9.1e-06 Score=95.70 Aligned_cols=259 Identities=12% Similarity=0.132 Sum_probs=165.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc------Cc
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV------DK 220 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~------~~ 220 (858)
.+..|+.-|.+.|.++|.+|-.+|.++..... .++.|..++.... +++++-.|+-.++.|+. +.
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~-~p~~Rq~aaVl~Rkl~~~~w~~l~~ 74 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSA-DPQVRQLAAVLLRKLLTKHWSRLSA 74 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHhhcCCH
Confidence 34566677777888889999999998877553 6889999988864 99999999988888863 33
Q ss_pred chHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008 221 KHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299 (858)
Q Consensus 221 ~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~ 299 (858)
+.|..| -..|+..+ +...+.++..-+.+++.++.+.-.- -..+.++.|.+..++++. ..|+.|..+|+
T Consensus 75 e~~~si-----ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~---~~rE~al~il~ 143 (1075)
T KOG2171|consen 75 EVQQSI-----KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNP---SLRESALLILS 143 (1075)
T ss_pred HHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCc---chhHHHHHHHH
Confidence 344444 23455554 4457889999999999998764222 334556677777766643 38889988888
Q ss_pred HHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHH
Q 003008 300 ELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM 379 (858)
Q Consensus 300 nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~ 379 (858)
.+...=.+. +..+ +
T Consensus 144 s~~~~~~~~------------~~~~------------------------------------------------------~ 157 (1075)
T KOG2171|consen 144 SLPETFGNT------------LQPH------------------------------------------------------L 157 (1075)
T ss_pred hhhhhhccc------------cchh------------------------------------------------------H
Confidence 776420000 0000 0
Q ss_pred hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CC---hhh
Q 003008 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-IN---EHM 455 (858)
Q Consensus 380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~---~~~ 455 (858)
.. ..+-+.+-+.+++..++..+++++.... .. ...
T Consensus 158 ~~-----------------------------------------l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~ 196 (1075)
T KOG2171|consen 158 DD-----------------------------------------LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSE 196 (1075)
T ss_pred HH-----------------------------------------HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHH
Confidence 00 1111222334444448888888888843 22 222
Q ss_pred HHHHHH--cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhH-HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008 456 RMLFKE--AGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV-CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILG 531 (858)
Q Consensus 456 ~~~l~~--~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~-~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~ 531 (858)
+..+.. .+.+..+-..+..++.+.-..+..+|..+.. .+.. +..+. ..|...+.+..+.+-++.+|..|..+|.
T Consensus 197 ~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 197 VDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 333322 2344444455666777778888888888887 3443 33333 2456666677767777889999999988
Q ss_pred HhcC
Q 003008 532 RILD 535 (858)
Q Consensus 532 ~l~~ 535 (858)
.++.
T Consensus 275 s~~e 278 (1075)
T KOG2171|consen 275 SLSE 278 (1075)
T ss_pred HHHH
Confidence 8876
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=9.3e-06 Score=89.59 Aligned_cols=429 Identities=16% Similarity=0.106 Sum_probs=230.5
Q ss_pred CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh--HHHHHh---cCc
Q 003008 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY--RDLVAE---CGA 188 (858)
Q Consensus 114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~--~~~i~~---~g~ 188 (858)
+.++-+|...-..+.-+++...-+ . -..++|.|..+|.+.+...++-|..+|..++.+... ...... .-.
T Consensus 101 d~~~lIr~tvGivITTI~s~~~~~----~-wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~m 175 (885)
T KOG2023|consen 101 DASPLIRATVGIVITTIASTGGLQ----H-WPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIM 175 (885)
T ss_pred CchHHHHhhhhheeeeeecccccc----c-chhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHh
Confidence 445444544333344444433322 1 256899999999999999999999999999886531 111111 125
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHH
Q 003008 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILV 268 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~ 268 (858)
+|.++++.+++ +|.++.+|+.++-..-......-...-...++.|..+-..+++++|.+.+.+|..|......|..=-
T Consensus 176 ipkfl~f~~h~--spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph 253 (885)
T KOG2023|consen 176 IPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH 253 (885)
T ss_pred HHHHHHHHhCC--ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc
Confidence 89999999998 9999999999886654433222222234567788888888899999999999999875543332111
Q ss_pred hCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHH--cCCcccccccccccccCCccCCCCCCCCCcchh
Q 003008 269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIE--EGLVPVPMVGADAYKSFRPELHSWPSLPDGTEI 346 (858)
Q Consensus 269 ~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~--~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~ 346 (858)
-.+.++-+++.-+.. .+.+--.|+.....++..+..+..+.. ...+|. |++=+.|.+.+..|
T Consensus 254 l~~IveyML~~tqd~---dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPv-Ll~~M~Ysd~D~~L------------ 317 (885)
T KOG2023|consen 254 LDNIVEYMLQRTQDV---DENVALEACEFWLALAEQPICKEVLQPYLDKLIPV-LLSGMVYSDDDIIL------------ 317 (885)
T ss_pred hHHHHHHHHHHccCc---chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHH-HHccCccccccHHH------------
Confidence 123344444443333 344667888888888888754444433 345554 55544444443321
Q ss_pred hcccCCchhhHHHHHHhccCCCCCCcc-chHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008 347 ERTSQGPSKFGANELLLGLNVSDKNAN-IDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA 425 (858)
Q Consensus 347 ~~~~~~~~~~~a~~aL~nL~~~~~~~~-i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~ 425 (858)
.+ ..+++... -.+.-+++=...++++....... + +|+. +-+...++
T Consensus 318 ----------------L~-~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~-~-eDdd--dDe~DDdD------------ 364 (885)
T KOG2023|consen 318 ----------------LK-NNEEDESVPDREEDIKPRFHKSKEHGNGEDAD-D-EDDD--DDEDDDDD------------ 364 (885)
T ss_pred ----------------hc-CccccccCCchhhhccchhhhchhccCccccc-c-cccc--cccccccc------------
Confidence 11 00110000 01111111111010000000000 0 0000 00000000
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHc--
Q 003008 426 RLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAE-- 503 (858)
Q Consensus 426 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~-- 503 (858)
...+..+|...+.+|--++.- .+..+. .-..|.|-..|.++.-.+|+.++.||+.++. .+-+-+...
T Consensus 365 ------~~~dWNLRkCSAAaLDVLanv--f~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE--GcM~g~~p~Lp 433 (885)
T KOG2023|consen 365 ------AFSDWNLRKCSAAALDVLANV--FGDELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAE--GCMQGFVPHLP 433 (885)
T ss_pred ------ccccccHhhccHHHHHHHHHh--hHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHH--HHhhhcccchH
Confidence 012345666555555544320 000011 2245556666778889999999999999984 111112211
Q ss_pred CChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc
Q 003008 504 GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT 582 (858)
Q Consensus 504 g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~ 582 (858)
..||.|+.+|. +..+-+|.-++|+|+..+.--........+ ...+..+++.+-+.+..|+..|| ++..+-.+...
T Consensus 434 eLip~l~~~L~--DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~ 509 (885)
T KOG2023|consen 434 ELIPFLLSLLD--DKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGE 509 (885)
T ss_pred HHHHHHHHHhc--cCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccc
Confidence 24677788887 444888999999998876410000010011 01244455556678899999999 77665433222
Q ss_pred hhhhHhhccchhHHHHhhc----------CCCHHHHHHHHHHHHHhhcC
Q 003008 583 SYGKVLDSVFIGRMIGIMK----------TSYPDLQRKAASILEFITII 621 (858)
Q Consensus 583 ~~~~i~~~g~i~~L~~lL~----------s~~~~v~~~a~~~L~~l~~~ 621 (858)
. .+|.|-.+|. ..|-.|..-|.++|+.-..+
T Consensus 510 e--------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~ 550 (885)
T KOG2023|consen 510 E--------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGH 550 (885)
T ss_pred h--------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHH
Confidence 1 2333333332 34555666777777765533
No 41
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.72 E-value=8.9e-08 Score=103.26 Aligned_cols=220 Identities=19% Similarity=0.111 Sum_probs=159.7
Q ss_pred CCcHHHHHHHhcCC-CCHHHHHHHHHHHHHcccCCcccHHHHHHh------cCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 003008 101 DSYVALFVQMLGLD-YDPLDREQAVEALWKYSLGGKKCIDYIMQF------SGCINLTVNLLRSESSAACEAAAGLLRSI 173 (858)
Q Consensus 101 ~g~i~~lv~lL~~s-~d~~~~~~a~~~L~~la~~~~~~~~~ii~~------~g~i~~Li~lL~~~~~~~~~~a~~aL~nL 173 (858)
.+....++++|+.. ++.++..+.+..+..+..+..... .++.+ .....++++++.++|..++..|+..|..|
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~-~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRV-ELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL 132 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSH-HHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 45566777877644 677899999999999988777654 34423 22688899999999999999999999999
Q ss_pred hcCchhHHHHHhcCcHHHHHHHhcCCC--CCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHH-----ccC--CH
Q 003008 174 SSINVYRDLVAECGAIEEITGLLTRPS--LTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL-----EDE--NM 244 (858)
Q Consensus 174 s~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll-----~~~--~~ 244 (858)
....+.+..-...+.++.++..+++.. .+...+..++.+|.+|...++.|..+.+.|+++.|+.++ ..+ +.
T Consensus 133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 776554443333566788888877632 134566889999999999999999999999999999999 222 55
Q ss_pred HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh--hHHHHHHcCCcccccc
Q 003008 245 KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY--YRILIIEEGLVPVPMV 322 (858)
Q Consensus 245 ~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~--~~~~i~~~g~v~~~Lv 322 (858)
.++.+++-++|-|+.+++....+.+.+.++.|+++++... -+++.+-+..+|.||...+. +...|+..|+++ ++
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~--KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~--~l 288 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI--KEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLK--TL 288 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHH--HH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc--cchHHHHHHHHHHHHHhccHHHHHHHHHHccHHH--HH
Confidence 7889999999999999999999999999999999998753 45688899999999999654 899999999888 34
Q ss_pred ccc
Q 003008 323 GAD 325 (858)
Q Consensus 323 ~ll 325 (858)
+.+
T Consensus 289 ~~L 291 (312)
T PF03224_consen 289 QNL 291 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 42
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.69 E-value=1.1e-06 Score=92.62 Aligned_cols=352 Identities=14% Similarity=0.110 Sum_probs=225.6
Q ss_pred cHHHHHHHhCCCC-HHHHHHHHHHHHHhcCChhhHHHHHH-------cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcCh
Q 003008 423 GVARLVLILGLED-ERAIARAAESIADISINEHMRMLFKE-------AGAIKYLVKLLDHSSDAVRLATTHALERLSVSR 494 (858)
Q Consensus 423 ~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~l~~-------~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~ 494 (858)
.+.+++.+++..+ ++....+...+..+-..+..+..++. .-.-++.+++|...+.-+.....+.+..++...
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 6778888887654 55566666666664443444443331 222556788998888888888888888887632
Q ss_pred hHHHHHHHcCC-hHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCC--ChhHHHHHH
Q 003008 495 GVCQIMEAEGV-VHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL--DPSIELTGN 571 (858)
Q Consensus 495 ~~~~~l~~~g~-i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~--d~~v~~~a~ 571 (858)
..+....+... ...|...+. ++++......+..||..+.. ....+..+...+|+..++..+.+. +-.++...+
T Consensus 146 ~~~~~~~e~~~~~~~l~~~l~-~~~~~~~~~~~~rcLQ~ll~---~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi 221 (442)
T KOG2759|consen 146 NCKMELSELDVYKGFLKEQLQ-SSTNNDYIQFAARCLQTLLR---VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI 221 (442)
T ss_pred cccccchHHHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHhc---CcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence 22211111111 223444555 33456677889999999998 666777788899999999988543 456677777
Q ss_pred -HHHHhhccccchhhhHhhccchhHHHHhhcCCCH-HHHHHHHHHHHHhhcCCcchHHH---HhhchHHHHHHHHHhhhc
Q 003008 572 -VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYP-DLQRKAASILEFITIIDPSMDTI---ISADIESGLDAIFQQKAL 646 (858)
Q Consensus 572 -~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~-~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~~gl~~l~~~~iL 646 (858)
|+.-|..++... +.+...+.|+.|.+++++... .|-+-++.++.|+...++.+... .......++.+.+ ..|
T Consensus 222 fciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l--~~L 298 (442)
T KOG2759|consen 222 FCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTL--QSL 298 (442)
T ss_pred HHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHH--HHH
Confidence 888887777666 777778999999999986654 58889999999998877533222 1111222233333 567
Q ss_pred cCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchh--hHHHHHHHhh
Q 003008 647 EDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYK--DWVAACLVKL 724 (858)
Q Consensus 647 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~l~~l 724 (858)
....|++|+..+|+..|. ..-......|.+|+++....... .+ .+.|.+.+ -|-+.+
T Consensus 299 ~~rkysDEDL~~di~~L~--------e~L~~svq~LsSFDeY~sEl~sG--------~L-~WSP~Hk~e~FW~eNa---- 357 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLT--------EKLKNSVQDLSSFDEYKSELRSG--------RL-EWSPVHKSEKFWRENA---- 357 (442)
T ss_pred HhcCCCcHHHHHHHHHHH--------HHHHHHHHhhccHHHHHHHHHhC--------Cc-CCCccccccchHHHhH----
Confidence 788888877655544431 11122334456666653221111 11 12232211 111100
Q ss_pred cccCCCCCCCCccchhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCCh
Q 003008 725 SCLSGPDQDFENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSN 803 (858)
Q Consensus 725 ~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 803 (858)
.+-..-....+..|+.+|+ +.++.+..-||.-+.......+. ....+-+-||=+.++++|+++++
T Consensus 358 -------------~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~-gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 358 -------------DRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPE-GKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred -------------HHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCch-HhHHHHHhchHHHHHHHhcCCCc
Confidence 0000012346889999998 66688888899888888776665 66678889999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 003008 804 RAVEAGLAILYNL 816 (858)
Q Consensus 804 ~v~~~a~~aL~nL 816 (858)
+||-+|+.|+-.|
T Consensus 424 ~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 424 EVRYHALLAVQKL 436 (442)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999988654
No 43
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.3e-06 Score=93.81 Aligned_cols=396 Identities=15% Similarity=0.071 Sum_probs=240.8
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCchhH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSINVYR 180 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~~~ 180 (858)
-.+|.|+.+|+.-.+.++...|+++|.+|+.--+... .++++.++||.|+.-|.. .-.++.++++.+|..|+.. .-
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~-a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~ 287 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS-AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HP 287 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh-heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cc
Confidence 4578899999856688999999999999986433322 455689999999887754 4567889999999999874 45
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
.+|.++|++...+..+.-. ...+++.|+.+-.|.|.. ++.-..++ ..+|.|..+|...+....+.++-++..++
T Consensus 288 ~AiL~AG~l~a~LsylDFF--Si~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFF--SIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHhcccHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 6789999999999998877 788999999999999843 33334443 35899999999999999999999999997
Q ss_pred CCc---CchH-HHHhCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCc
Q 003008 259 LSK---SNHN-ILVEAGVIPKLAMLLKANVEG-SKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 259 ~~~---~~~~-~i~~~g~i~~Lv~ll~~~~~~-~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
..- ..+. .+...|.|....+|+.-.... +........+.|.-||.+ +-....+.+.++... |-.++.-.+..+
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~-L~~il~g~s~s~ 442 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADT-LKRILQGYSKSA 442 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHH-HHHHHhccCcCc
Confidence 652 2333 678889999999887543111 111344667788888885 777788888887775 666642222211
Q ss_pred cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCcc---chHHHHhhhhh----------------hhhhhHHHH
Q 003008 333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNAN---IDEAKMNAMVG----------------RSRQHFLVR 393 (858)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~---i~~~~~~~li~----------------~~~~~~L~~ 393 (858)
. ....+.+-. ....++.....+..|........ ++.--+..++. .+-+....|
T Consensus 443 n-------as~~~~l~r-~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~r 514 (1051)
T KOG0168|consen 443 N-------ASLHELLSR-SPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSR 514 (1051)
T ss_pred c-------ccccccccc-CcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhh
Confidence 1 000001100 01222222222222211100000 00000000000 000000111
Q ss_pred hhcccccCCC-CC----CCCCCccc--------ccccccccccHHHHHHHhCC-CCHHHHHHHHHHHHHh-c-CChhhHH
Q 003008 394 IGAIESEDGR-KP----QSEFPIDR--------QLTLLPWIDGVARLVLILGL-EDERAIARAAESIADI-S-INEHMRM 457 (858)
Q Consensus 394 ~~~~~~~~~~-~~----~l~~~~~~--------~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l-~-~~~~~~~ 457 (858)
.-.-..++.. .+ .+..+++. .++.. ..+.+|.|++..++ -++.|+.+|..+|..+ + .+.+.-.
T Consensus 515 i~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F-~~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~ 593 (1051)
T KOG0168|consen 515 IIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSF-GKDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIG 593 (1051)
T ss_pred hhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHH-HHHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHH
Confidence 0000000000 00 01111111 00111 12367888888865 5899999999999993 2 3455444
Q ss_pred H-HHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhc
Q 003008 458 L-FKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLK 514 (858)
Q Consensus 458 ~-l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~ 514 (858)
. +.+...-..|-..|.+++..|.-.|....-.|.. .+..-..++++|++..+-+|..
T Consensus 594 slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 594 SLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 4 4455556677788888887777666666555555 3344567788888888877765
No 44
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.63 E-value=2e-06 Score=90.78 Aligned_cols=271 Identities=18% Similarity=0.142 Sum_probs=195.4
Q ss_pred HHHHhcCcHHHHHHHHccCCHHH--HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003008 140 YIMQFSGCINLTVNLLRSESSAA--CEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS 217 (858)
Q Consensus 140 ~ii~~~g~i~~Li~lL~~~~~~~--~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs 217 (858)
..++..|+++.|++++.+++.+. |..|++.|-.+.. .+|++.++.-| +..++.+.+.. +.++..+..+.+|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~-e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER-EPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc-CcHHHHHHHHHHHHHHh
Confidence 34567899999999999987654 8889999988754 36777777765 45555555443 26788999999999998
Q ss_pred cCc-chHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHH
Q 003008 218 VDK-KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEA 294 (858)
Q Consensus 218 ~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a 294 (858)
.+. +.+..++..|++..++-..+..+|.+...|+-+|.|++.. .+.+..+++..+.++|.-+-.+. .+..+.+|
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk---Del~R~~A 327 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK---DELLRLHA 327 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch---HHHHHHHH
Confidence 654 5689999999999999999999999999999999999864 46777899999999999887654 34588899
Q ss_pred HHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccc
Q 003008 295 RNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANI 374 (858)
Q Consensus 295 ~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i 374 (858)
+.+.+.++.+.+....+.+.|-+. ||+=+ + ..+ ++
T Consensus 328 ClAV~vlat~KE~E~~VrkS~Tla--LVEPl-v----------a~~---------------------------DP----- 362 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLA--LVEPL-V----------ASL---------------------------DP----- 362 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchh--hhhhh-h----------hcc---------------------------Cc-----
Confidence 999999999887777777777666 45421 0 000 11
Q ss_pred hHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hc-CC
Q 003008 375 DEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD-IS-IN 452 (858)
Q Consensus 375 ~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~-~~ 452 (858)
+ .++|... + +..=.-.+.++.|+.||.+...+.+..++-.++. .+ ++
T Consensus 363 --~------------~FARD~h----d-------------~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs 411 (832)
T KOG3678|consen 363 --G------------RFARDAH----D-------------YAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS 411 (832)
T ss_pred --c------------hhhhhhh----h-------------hhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence 0 0222110 0 0000012267889999988777777666655555 33 45
Q ss_pred hhhHHHHH-HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 453 EHMRMLFK-EAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 453 ~~~~~~l~-~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
.+++..++ +-|+|+.|-.+.++++..-...|-.+|.-+..
T Consensus 412 ~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 412 LQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 56666555 78999999999998876666677777776654
No 45
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.8e-06 Score=94.13 Aligned_cols=193 Identities=16% Similarity=0.058 Sum_probs=151.1
Q ss_pred cHHHHHHHhCCC-CHHHHHHHHHHHHH-hc-CChhhHHHHHHcCcHHHHHHhhcCCc-HHHHHHHHHHHHHhhc-ChhHH
Q 003008 423 GVARLVLILGLE-DERAIARAAESIAD-IS-INEHMRMLFKEAGAIKYLVKLLDHSS-DAVRLATTHALERLSV-SRGVC 497 (858)
Q Consensus 423 ~i~~Lv~lL~~~-~~~v~~~a~~aL~~-l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~-~~v~~~a~~aL~~Ls~-~~~~~ 497 (858)
-+..|+.-|... |+..|.+++.=|+. +. .+++.-..|--.-.+|.|+.||++++ .++...|+.||.+|+. .|...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 456677777665 88888888888888 44 56666555556778999999999875 9999999999999998 78888
Q ss_pred HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008 498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA 576 (858)
Q Consensus 498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L 576 (858)
..++++++||.|+.-|. .-+-.++-|.+..+|-.+++ +.. ..+...|++...+.++.--...+++.|+ ...|+
T Consensus 248 a~vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR---~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~ 321 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISR---RHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANC 321 (1051)
T ss_pred heeecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHh---hcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987665 23336788889999999987 322 3577889999999998877788899998 77777
Q ss_pred hccccc--hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 577 VSETTT--SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 577 ~~~~~~--~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
+..-.. . ..+ ...+|.|..+|+..+....+.++-++..++.+-.+
T Consensus 322 Cksi~sd~f-~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 322 CKSIRSDEF-HFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HhcCCCccc-hHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 743222 2 233 35789999999999998888888888888765443
No 46
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.57 E-value=1.1e-05 Score=85.29 Aligned_cols=301 Identities=18% Similarity=0.218 Sum_probs=198.2
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCc----HHHHHHHHcc-CCHHHHHHHHHHHHHhhcCch
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGC----INLTVNLLRS-ESSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~----i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~ 178 (858)
-..++++|. ..|.-+...+.+++..++...... + +.+- ...|...+.+ .+.+.+..|+++|..+...++
T Consensus 116 ~~~fl~ll~-r~d~~iv~~~~~Ils~la~~g~~~----~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e 189 (442)
T KOG2759|consen 116 WLSFLNLLN-RQDTFIVEMSFRILSKLACFGNCK----M-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE 189 (442)
T ss_pred hHHHHHHHh-cCChHHHHHHHHHHHHHHHhcccc----c-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc
Confidence 345677776 666666666777777777654422 1 1112 2223344444 466777789999999999999
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANL 257 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL 257 (858)
+|..++...++..++..+.+.-.+-+++.+..-+++-|+.++...+.+...+.|+.|.+++++. .++|.+-++.++.|+
T Consensus 190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999884332477899999999999999998888888889999999999987 567889999999999
Q ss_pred cCCcCc-------hHHHHhCCCHHHHHHHHccCCCCCHHHH-------HHHHHHHHHHhcChhhHHHHHHcCCccccccc
Q 003008 258 ALSKSN-------HNILVEAGVIPKLAMLLKANVEGSKVIR-------KEARNALIELAKDDYYRILIIEEGLVPVPMVG 323 (858)
Q Consensus 258 ~~~~~~-------~~~i~~~g~i~~Lv~ll~~~~~~~~~~~-------~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ 323 (858)
....+. ...++..++.+.+-.+...+-+ .+.+. +.--.-...||..+++...+...-.-+.
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkys-DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WS---- 344 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYS-DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWS---- 344 (442)
T ss_pred hccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCC----
Confidence 876532 2345655554444444433322 22222 2222222333333333333322111110
Q ss_pred ccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCC
Q 003008 324 ADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGR 403 (858)
Q Consensus 324 ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~ 403 (858)
|.+. ..+ +| .+. ..+..
T Consensus 345 --------------P~Hk-------~e~----------FW-----------~eN-------------a~rln-------- 361 (442)
T KOG2759|consen 345 --------------PVHK-------SEK----------FW-----------REN-------------ADRLN-------- 361 (442)
T ss_pred --------------cccc-------ccc----------hH-----------HHh-------------HHHHh--------
Confidence 0000 000 11 000 00000
Q ss_pred CCCCCCCcccccccccccccHHHHHHHhCCC-CHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHH
Q 003008 404 KPQSEFPIDRQLTLLPWIDGVARLVLILGLE-DERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481 (858)
Q Consensus 404 ~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~ 481 (858)
++. -..++.|+.+|... |+.+...||.=++. .-..|+.+..+.+.||=+.+++|+++++++||.
T Consensus 362 --------enn------yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry 427 (442)
T KOG2759|consen 362 --------ENN------YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRY 427 (442)
T ss_pred --------hcc------HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHH
Confidence 000 01567888999754 58889999999999 668999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 003008 482 ATTHALERLSV 492 (858)
Q Consensus 482 ~a~~aL~~Ls~ 492 (858)
+|..|+..|-.
T Consensus 428 ~ALlavQ~lm~ 438 (442)
T KOG2759|consen 428 HALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 47
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00027 Score=79.89 Aligned_cols=347 Identities=14% Similarity=0.083 Sum_probs=231.3
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCc
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~ 177 (858)
+...|++|++.+.++.=.+.|..|++.|..++.. . +..+ -.-|+++|+..|+.+ |++....++.++.++..++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk---Y-R~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK---Y-REEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH---H-HHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 4677899999987566667899999999988862 2 2334 367889999999876 8888888999999996644
Q ss_pred h-------hH----------HH-HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHH-hCCCHHHHH
Q 003008 178 V-------YR----------DL-VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIA-NTDILPLLI 236 (858)
Q Consensus 178 ~-------~~----------~~-i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~-~~g~i~~Lv 236 (858)
+ -+ +. |...+-|..|+..+... |-.++.++...|.+|-.+ .+.+..+. .--+|..|+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 2 11 22 23377899999999988 999999999999998543 34555555 567899999
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCC-CCCHHHHHHHHHHHHHHhc-ChhhHHHHHH
Q 003008 237 KSLEDENMKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANV-EGSKVIRKEARNALIELAK-DDYYRILIIE 313 (858)
Q Consensus 237 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~-~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~ 313 (858)
.+|+...+.+|-.+.-.|..|+.+...-. .+.-..+...|..++..+. .+.-.+.+.|+..|-||-. |..|+....+
T Consensus 173 dlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE 252 (970)
T KOG0946|consen 173 DLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE 252 (970)
T ss_pred HHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence 99999988899999999999998765544 4555688999999887643 2233477899999999998 6789999999
Q ss_pred cCCcccccccccccccCCccCCCCCCCCCcchhhc--ccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHH
Q 003008 314 EGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIER--TSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFL 391 (858)
Q Consensus 314 ~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L 391 (858)
.+.++. |..++. ++.+.+| +... .........++.+++.+. .+.|..-.....+
T Consensus 253 ~~~i~r-L~klL~----------~f~~~d~-Ev~~W~~Qrv~Nv~~~Lqivr~lV-sP~Nt~~~~~q~q----------- 308 (970)
T KOG0946|consen 253 GSYIPR-LLKLLS----------VFEFGDG-EVFGWSTQRVQNVIEALQIVRSLV-SPGNTSSITHQNQ----------- 308 (970)
T ss_pred cccHHH-HHhhcC----------cccccCc-ccccccHHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHH-----------
Confidence 999995 887652 1222222 0000 000011112333333332 1212110000110
Q ss_pred HHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC--CHHHHHHHHHHHHH-hcCChhhHHHHHHcCc----
Q 003008 392 VRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE--DERAIARAAESIAD-ISINEHMRMLFKEAGA---- 464 (858)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~---- 464 (858)
..+...+.+..|..++-++ ..+|+..+.-++++ .-++..++..+.+..+
T Consensus 309 ------------------------k~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~ 364 (970)
T KOG0946|consen 309 ------------------------KALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIP 364 (970)
T ss_pred ------------------------HHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCC
Confidence 1222233667777777766 46788888888888 5567777777764322
Q ss_pred ------HHHHHHhhcC-CcHHHHHHHHHHHHHhhc-ChhHHHHHH
Q 003008 465 ------IKYLVKLLDH-SSDAVRLATTHALERLSV-SRGVCQIME 501 (858)
Q Consensus 465 ------i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~-~~~~~~~l~ 501 (858)
+-.++.+..+ .....|.++..++..... +.+....+.
T Consensus 365 ~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 365 NPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred CCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHH
Confidence 1122233333 347888888888888776 555544443
No 48
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=0.00016 Score=83.33 Aligned_cols=111 Identities=15% Similarity=0.148 Sum_probs=94.4
Q ss_pred cHHHHHHHhC-CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 423 GVARLVLILG-LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 423 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
..+-+..++. ..++.++.-|...+..+..+.+....+.+.|.+..|+.+|++ -+..|+.+...|..|+++++....-.
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4455555554 467899999999999998999999999999999999998854 57899999999999999999988888
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
+.|++..+.+++- .++.++++..++..|+.+..
T Consensus 1851 ~hg~l~yil~~~c-~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1851 EHGGLMYILSILC-LTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred hcCchhhhhHHHh-ccCcHHHHHHHHHHHHHhhh
Confidence 9999999988886 45568889999999999876
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=98.52 E-value=0.00023 Score=84.17 Aligned_cols=176 Identities=15% Similarity=0.056 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
.+.+++++. ++|..+|.-....|.+.+...... .++ ++..|.+-+.+.++.+|-.|+++|.+|-..+ +
T Consensus 70 F~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pel--alL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i 137 (746)
T PTZ00429 70 FVDVVKLAP-STDLELKKLVYLYVLSTARLQPEK--ALL----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----V 137 (746)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHH--HHH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----H
Confidence 455666776 778888888877888887644432 222 4677788888899999999988888775532 2
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~ 263 (858)
.+. .++.+.+.+.+. ++.+++.|+.++.++-..+. ..+.+.|.++.|.++|.+.++.+...|+.+|..+......
T Consensus 138 ~e~-l~~~lkk~L~D~--~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 138 LEY-TLEPLRRAVADP--DPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred HHH-HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 221 467778888887 99999999999999864332 2344678899999999999999999999999999765433
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIE 300 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n 300 (858)
+..+ ..+.+..|+..+...++. .|-..+.+|..
T Consensus 213 ~l~l-~~~~~~~Ll~~L~e~~EW---~Qi~IL~lL~~ 245 (746)
T PTZ00429 213 KIES-SNEWVNRLVYHLPECNEW---GQLYILELLAA 245 (746)
T ss_pred hhHH-HHHHHHHHHHHhhcCChH---HHHHHHHHHHh
Confidence 2222 224455666666544332 44555555543
No 50
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.6e-05 Score=78.00 Aligned_cols=292 Identities=20% Similarity=0.199 Sum_probs=193.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIM-QFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii-~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
-.++++|. +..|.+|..|+..+..+... ..+ .+. -+.-.++.+.+++....+ -+.|+.+|.|++.....|..+
T Consensus 6 ~elv~ll~-~~sP~v~~~AV~~l~~lt~~-~~~--~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 6 VELVELLH-SLSPPVRKAAVEHLLGLTGR-GLQ--SLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHhc-cCChHHHHHHHHHHhhcccc-chh--hhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 45788997 88999999999999998876 221 121 123467888889888766 556999999999999888888
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH---h----CCCHHHHHHHHccC-CH-HHHHHHHHHH
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA---N----TDILPLLIKSLEDE-NM-KVKEAAGGVL 254 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~---~----~g~i~~Lv~ll~~~-~~-~~~~~a~~~L 254 (858)
.+. .+..++..+-.+ ........+.+|.||+..++....+. . .|.++........+ +. .-..+.+-.+
T Consensus 80 l~~-~~k~l~~~~~~p--~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDP--QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHH-HHHHHHHHhcCc--ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 877 677777777665 45566778899999998887644433 1 33333333333333 21 3456788899
Q ss_pred HHHcCCcCchHHHHhCCCH--HHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008 255 ANLALSKSNHNILVEAGVI--PKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 255 ~nL~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
.||+....+|..+.+...+ +.|+. +.+ .++..-+...++.|.|+|.+..+...+.+. .+. .|.-+
T Consensus 157 ~nls~~~~gR~l~~~~k~~p~~kll~-ft~--~~s~vRr~GvagtlkN~cFd~~~h~~lL~e-~~~-lLp~i-------- 223 (353)
T KOG2973|consen 157 ANLSQFEAGRKLLLEPKRFPDQKLLP-FTS--EDSQVRRGGVAGTLKNCCFDAKLHEVLLDE-SIN-LLPAI-------- 223 (353)
T ss_pred HHHhhhhhhhhHhcchhhhhHhhhhc-ccc--cchhhhccchHHHHHhhhccchhHHHHhcc-hHH-HHHHH--------
Confidence 9999999999988766532 22222 222 234445567899999999988877777663 233 13322
Q ss_pred cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008 333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID 412 (858)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~ 412 (858)
|.-++... ++.+.-+..+-
T Consensus 224 -----------------------------LlPlagpe---e~sEEdm~~LP----------------------------- 242 (353)
T KOG2973|consen 224 -----------------------------LLPLAGPE---ELSEEDMAKLP----------------------------- 242 (353)
T ss_pred -----------------------------HhhcCCcc---ccCHHHHhcCC-----------------------------
Confidence 22232111 12222221111
Q ss_pred cccccccccccHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHH
Q 003008 413 RQLTLLPWIDGVARLVLIL-----GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHA 486 (858)
Q Consensus 413 ~~~~~l~~~~~i~~Lv~lL-----~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~a 486 (858)
.=+++| ..+|+.++..-..+|.-++.+...|+.++..|+-+.|-.+=+ .+++++++.+-..
T Consensus 243 -------------~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 243 -------------VELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred -------------HhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHH
Confidence 111222 246889999999999999999999999998887666655433 3568888887666
Q ss_pred HHHhhc
Q 003008 487 LERLSV 492 (858)
Q Consensus 487 L~~Ls~ 492 (858)
..-|..
T Consensus 310 vq~Lv~ 315 (353)
T KOG2973|consen 310 VQMLVR 315 (353)
T ss_pred HHHHHh
Confidence 555554
No 51
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.50 E-value=0.00074 Score=77.86 Aligned_cols=409 Identities=16% Similarity=0.134 Sum_probs=236.0
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc--hh
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN--VY 179 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--~~ 179 (858)
..++.+++.|+ ++ -.|..|++++..++...-.- +..-.-..+++.+..+++......+.....++..|..+- ..
T Consensus 611 ~~L~il~eRl~--nE-iTRl~AvkAlt~Ia~S~l~i-~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 611 RTLPILLERLG--NE-ITRLTAVKALTLIAMSPLDI-DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred HHHHHHHHHHh--ch-hHHHHHHHHHHHHHhcccee-ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666664 33 46889999999998765542 212112567888999998887777777777777775432 22
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
.....+. ++..+..++... +..+...|...|..+.........-...-.++.++.+++++- ++-.+..++.++-
T Consensus 687 ~~~~~e~-vL~el~~Lises--dlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f- 760 (1233)
T KOG1824|consen 687 PAELLEA-VLVELPPLISES--DLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFF- 760 (1233)
T ss_pred cHHHHHH-HHHHhhhhhhHH--HHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHH-
Confidence 3333322 345555566665 778888899999999877766665667778999999999873 3444444444331
Q ss_pred CcCchHHHHh---CCC-HHHHHHHHccCCCCCHH--HHHH----HHHHHHHHhc-Ch-hhHHHHHHcCCccccccccccc
Q 003008 260 SKSNHNILVE---AGV-IPKLAMLLKANVEGSKV--IRKE----ARNALIELAK-DD-YYRILIIEEGLVPVPMVGADAY 327 (858)
Q Consensus 260 ~~~~~~~i~~---~g~-i~~Lv~ll~~~~~~~~~--~~~~----a~~aL~nl~~-~~-~~~~~i~~~g~v~~~Lv~ll~~ 327 (858)
.+++. .+. ...|+.++.....+... +-+. .+.+..-|+. .+ +++... . .|+.-
T Consensus 761 -----~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a------~-kl~~~--- 825 (1233)
T KOG1824|consen 761 -----QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLA------T-KLIQD--- 825 (1233)
T ss_pred -----HHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHH------H-HHHHH---
Confidence 11111 111 45666666543221100 1111 2222222222 11 111110 0 01110
Q ss_pred ccCCccCCCCCCCCCcchhhcccC--CchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCC
Q 003008 328 KSFRPELHSWPSLPDGTEIERTSQ--GPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKP 405 (858)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~ 405 (858)
+++++ ...+.-|...|..+..+.
T Consensus 826 -------------------~~s~~s~~~ikvfa~LslGElgr~~------------------------------------ 850 (1233)
T KOG1824|consen 826 -------------------LQSPKSSDSIKVFALLSLGELGRRK------------------------------------ 850 (1233)
T ss_pred -------------------HhCCCCchhHHHHHHhhhhhhccCC------------------------------------
Confidence 00000 011111222222221111
Q ss_pred CCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHH
Q 003008 406 QSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT 484 (858)
Q Consensus 406 ~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~ 484 (858)
...+..+.-..+++-+++++++++..|+.||++++. +-+ ..+|.++....+.. .-|+--.
T Consensus 851 ----------~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sqp-k~QyLLL 911 (1233)
T KOG1824|consen 851 ----------DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQP-KRQYLLL 911 (1233)
T ss_pred ----------CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcch-HhHHHHH
Confidence 112222334467788999999999999999999663 332 35777777775543 2233223
Q ss_pred HHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCC--CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc
Q 003008 485 HALERLSV--SRGVCQIMEAEGVVHPLVNTLKNL--DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE 560 (858)
Q Consensus 485 ~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~ 560 (858)
..|...-. +.+ . -.-.++.++.+|... ...+..|...+.||+.|.. +.+..-+|.|-.++.
T Consensus 912 hSlkevi~~~svd---~--~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l----------~epesLlpkL~~~~~ 976 (1233)
T KOG1824|consen 912 HSLKEVIVSASVD---G--LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL----------IEPESLLPKLKLLLR 976 (1233)
T ss_pred HHHHHHHHHhccc---h--hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh----------CChHHHHHHHHHHhc
Confidence 33322211 111 0 112456666665432 2235578889999999987 233345788888999
Q ss_pred CCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008 561 SLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM 625 (858)
Q Consensus 561 s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~ 625 (858)
|+++..+..++ ++.+.+.+.... -.......|...+.++++++.+|++.|+.++...+.+.+..
T Consensus 977 S~a~~~rs~vvsavKfsisd~p~~-id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 977 SEASNTRSSVVSAVKFSISDQPQP-IDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred CCCcchhhhhhheeeeeecCCCCc-cCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhH
Confidence 99998888888 887777665444 23333455678889999999999999999999988876654
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.43 E-value=2.4e-06 Score=92.21 Aligned_cols=176 Identities=20% Similarity=0.253 Sum_probs=135.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC----CHHHHHHHHHHHHHhhcCch
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE----SSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~----~~~~~~~a~~aL~nLs~~~~ 178 (858)
....|++++. .+|..++..|+..|..+........ ... ..+.++.+++.+++. +.+.+..++.+|.+|...++
T Consensus 106 ~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~-~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~ 182 (312)
T PF03224_consen 106 PYSPFLKLLD-RNDSFIQLKAAFILTSLLSQGPKRS-EKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE 182 (312)
T ss_dssp -HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT---HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH
T ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcCCccc-cch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch
Confidence 5677888887 7899999999999999987766542 221 246778888888763 44566889999999999999
Q ss_pred hHHHHHhcCcHHHHHHHh-----cCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLL-----TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGG 252 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL-----~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~ 252 (858)
+|..+.+.|+++.+..++ .+...+.+++.+++-++|-||++++....+...+.++.|+.+++.. .+++.+-++.
T Consensus 183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999999 2222367899999999999999999999999999999999999876 7789999999
Q ss_pred HHHHHcCCcC--chHHHHhCCCHHHHHHHHc
Q 003008 253 VLANLALSKS--NHNILVEAGVIPKLAMLLK 281 (858)
Q Consensus 253 ~L~nL~~~~~--~~~~i~~~g~i~~Lv~ll~ 281 (858)
+|.||...+. +...++..|+++.+-.+..
T Consensus 263 ~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 263 ILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999998765 6677787666555444443
No 53
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=9.9e-06 Score=84.55 Aligned_cols=185 Identities=11% Similarity=0.075 Sum_probs=148.7
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVN 511 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~ 511 (858)
+.+.+-+..|..-|..+..+-++...++..|+..+|+.++++.+..+|..|++.++.++. +|.....+.+.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 346677888888888888888899999999999999999999999999999999999999 7999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCC--ChhHHHHHH-HHHHhhccccchhhhHh
Q 003008 512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL--DPSIELTGN-VIEAAVSETTTSYGKVL 588 (858)
Q Consensus 512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~--d~~v~~~a~-~l~~L~~~~~~~~~~i~ 588 (858)
++. .+.+..++..|..+++.+-.+. ......+...+|+..|+..+.++ ++..++.++ .+..+.+....-...+.
T Consensus 174 ~ls-~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 174 ILS-SDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHc-cCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 998 6667888899999999888732 22333456678999999999995 455666677 77777765554424455
Q ss_pred hccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 589 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
..+....+..+..+.+.++.+.++.++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 56666667777778888888888877765543
No 54
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.39 E-value=3.5e-05 Score=81.61 Aligned_cols=273 Identities=14% Similarity=0.117 Sum_probs=185.7
Q ss_pred HHHHHhCCCHHHHHHHHccCCH--HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008 223 RLKIANTDILPLLIKSLEDENM--KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIE 300 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~~~~--~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n 300 (858)
+..|...|++..|++++..++. .++.+|.+.|..+.. .+++..+...| +..++.+-+.. ..+..++..+..|.|
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~--e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKER--EPVELARSVAGILEH 248 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhc--CcHHHHHHHHHHHHH
Confidence 4567788999999999999854 468899999987753 45677676655 44444444321 245578889999999
Q ss_pred HhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHH
Q 003008 301 LAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM 379 (858)
Q Consensus 301 l~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~ 379 (858)
|..+ ++....+++.|++.. ++-.
T Consensus 249 mFKHSeet~~~Lvaa~~lD~-vl~~------------------------------------------------------- 272 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDA-VLYW------------------------------------------------------- 272 (832)
T ss_pred HhhhhHHHHHHHHhhcccch-heee-------------------------------------------------------
Confidence 9985 577788888888885 3221
Q ss_pred hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc--CChhhHH
Q 003008 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS--INEHMRM 457 (858)
Q Consensus 380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~ 457 (858)
++..++.+...|+-+|+|+. ...+.+.
T Consensus 273 ---------------------------------------------------~rRt~P~lLRH~ALAL~N~~L~~~~a~qr 301 (832)
T KOG3678|consen 273 ---------------------------------------------------CRRTDPALLRHCALALGNCALHGGQAVQR 301 (832)
T ss_pred ---------------------------------------------------cccCCHHHHHHHHHHhhhhhhhchhHHHH
Confidence 11123456667888888843 5677888
Q ss_pred HHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008 458 LFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS 537 (858)
Q Consensus 458 ~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~ 537 (858)
.+++..+-+.|.-|-.+.++-.|..|+.+.+.|+.+.+....+.+.|.+..+--++...+ +... +.
T Consensus 302 rmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D-P~~F-----------AR-- 367 (832)
T KOG3678|consen 302 RMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLD-PGRF-----------AR-- 367 (832)
T ss_pred HHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC-cchh-----------hh--
Confidence 899999999999999899999999999999999999998888999887654444444222 1111 11
Q ss_pred cccccccccccCcCcHHHHHhhcCCChhHHHHHH---HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHH
Q 003008 538 KEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN---VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASI 614 (858)
Q Consensus 538 ~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~---~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~ 614 (858)
+...-.+-...+.++.|+-+|.|.-.+.+-.+. +...-+...++....+-+-|+|+.|-++.+|.+......|-.+
T Consensus 368 -D~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseA 446 (832)
T KOG3678|consen 368 -DAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEA 446 (832)
T ss_pred -hhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 110000011123466777788766555554443 2223334445553566788999999999999888777777777
Q ss_pred HHHhhcC
Q 003008 615 LEFITII 621 (858)
Q Consensus 615 L~~l~~~ 621 (858)
|..+-..
T Consensus 447 LtviGEE 453 (832)
T KOG3678|consen 447 LTVIGEE 453 (832)
T ss_pred HHHhccc
Confidence 7766443
No 55
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=5.7e-06 Score=73.20 Aligned_cols=129 Identities=17% Similarity=0.164 Sum_probs=109.4
Q ss_pred CcHHHHHHHH-ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHH
Q 003008 146 GCINLTVNLL-RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRL 224 (858)
Q Consensus 146 g~i~~Li~lL-~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~ 224 (858)
+-+..|+.-. ...+.+.+++...-|.|.+.++-|-..+.+..++...++.|..+ |...++.+...|||+|.++.++.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~--ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc--cHHHHHHhHHHHHhhccChHHHH
Confidence 3344555444 34588999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHH
Q 003008 225 KIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLL 280 (858)
Q Consensus 225 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll 280 (858)
.|++++++|.++..+.++.....-.++.+|..|+... ..+..+.. |++|..+
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 9999999999999999998888999999999998764 44555544 4555544
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.31 E-value=9.8e-05 Score=81.53 Aligned_cols=149 Identities=14% Similarity=0.038 Sum_probs=114.8
Q ss_pred cHHHHHHHh-CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 423 GVARLVLIL-GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 423 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
+++.++..| ..++.++...++.++..... ..++..|+..|.+.++.|+..++.+|+.+-.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------- 115 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------- 115 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc---------
Confidence 688899999 46778887777776654322 2248999999999999999999999987653
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET 580 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~ 580 (858)
.+..+.|+.+|.+.+ +.++..+..++..... +..+.++.+++++|+.++..++ ++..+-
T Consensus 116 -~~a~~~L~~~L~~~~--p~vR~aal~al~~r~~--------------~~~~~L~~~L~d~d~~Vra~A~raLG~l~--- 175 (410)
T TIGR02270 116 -RQAEPWLEPLLAASE--PPGRAIGLAALGAHRH--------------DPGPALEAALTHEDALVRAAALRALGELP--- 175 (410)
T ss_pred -hHHHHHHHHHhcCCC--hHHHHHHHHHHHhhcc--------------ChHHHHHHHhcCCCHHHHHHHHHHHHhhc---
Confidence 345788889997444 7788777766655332 1367899999999999999998 776543
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI 618 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l 618 (858)
....++.|...+.+.++.|+..|+..+..+
T Consensus 176 --------~~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 176 --------RRLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred --------cccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 234567888999999999999999999766
No 57
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=6.1e-05 Score=78.75 Aligned_cols=184 Identities=18% Similarity=0.202 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHH
Q 003008 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEI 192 (858)
Q Consensus 114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~L 192 (858)
+.+++.+..|..-|..++.+-++. ..++ ..|++..++..+.+++.++|+.|++.|...+.++ ..+..+.+.|+++.|
T Consensus 94 s~~le~ke~ald~Le~lve~iDnA-ndl~-~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNA-NDLI-SLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhH-HhHh-hccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 457788888998898888776663 4677 6999999999999999999999999999999876 599999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCc-CchHHHH
Q 003008 193 TGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSK-SNHNILV 268 (858)
Q Consensus 193 v~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~-~~~~~i~ 268 (858)
+..+.+.. +..++..|+-+++.|-.+. .....+...++...|...+.++ +...+..++..+.+|.... ..+..+.
T Consensus 172 l~~ls~~~-~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDD-PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHccCC-CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999762 5566788999999988665 4677788888899999999995 6678899999999998754 3333444
Q ss_pred hCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 269 EAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 269 ~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
..|....++.+..+.... +.+.+..++..+..
T Consensus 251 ~~~f~~~~~~l~~~l~~~---~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFE---VNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchh---hhHHHHHHHHHHHH
Confidence 455555555565554322 67788877776665
No 58
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.22 E-value=1.4e-05 Score=70.79 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=108.6
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR 180 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~ 180 (858)
-+.+..|++-.....+.+.+++...-|.|++.++.+. .++++.++++.++..|...+....+.+.+.|+|++-++.+.
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny--s~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY--SHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH--HHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 5677788887765677788999998999999998885 56678999999999999999999999999999999999999
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc-hHHHHHh
Q 003008 181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-HRLKIAN 228 (858)
Q Consensus 181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~ 228 (858)
..|.+++++|.++..+.++ ...+...++.+|..|+..+. .+..+..
T Consensus 93 ~~I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSP--PEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999998 88899999999999997653 4666643
No 59
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.00042 Score=70.50 Aligned_cols=291 Identities=19% Similarity=0.172 Sum_probs=187.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008 149 NLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA 227 (858)
Q Consensus 149 ~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 227 (858)
-.++.++.+.++.++..|+.-|.+++.. ..+..... .-.++.+.+++... .+ .+.|+.+|.|++-++..+..+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 4578899999999999999999888766 33333322 44678899999876 55 7789999999999999888888
Q ss_pred hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHH---Hh----CCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Q 003008 228 NTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNIL---VE----AGVIPKLAMLLKANVEGSKVIRKEARNALIE 300 (858)
Q Consensus 228 ~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i---~~----~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~n 300 (858)
+. .++.++.++..+....-...+..|.|++..++....+ .. .|.+...+.....+... ..--.+.+.++.|
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~-~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNA-YAEFHYLAPVFAN 158 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccccc-ccchhHHHHHHHH
Confidence 77 8888888888886678889999999999987655533 12 45555555566554331 1234578889999
Q ss_pred HhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhh-HHHHHHhccCCCCCCccchHHHH
Q 003008 301 LAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKF-GANELLLGLNVSDKNANIDEAKM 379 (858)
Q Consensus 301 l~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~aL~nL~~~~~~~~i~~~~~ 379 (858)
++..+..|.-+.+...++ .-.++.++++ ++ ..++ +.+++|.|++.+..++
T Consensus 159 ls~~~~gR~l~~~~k~~p--~~kll~ft~~------------~s--------~vRr~GvagtlkN~cFd~~~h------- 209 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFP--DQKLLPFTSE------------DS--------QVRRGGVAGTLKNCCFDAKLH------- 209 (353)
T ss_pred HhhhhhhhhHhcchhhhh--Hhhhhccccc------------ch--------hhhccchHHHHHhhhccchhH-------
Confidence 999988888887776444 2222111111 11 1122 2677788776543110
Q ss_pred hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 003008 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF 459 (858)
Q Consensus 380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l 459 (858)
-.+|+ +...+. +..|.=+++.++.-..=
T Consensus 210 ------------------------------------------------~~lL~-e~~~lL---p~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 210 ------------------------------------------------EVLLD-ESINLL---PAILLPLAGPEELSEED 237 (353)
T ss_pred ------------------------------------------------HHHhc-chHHHH---HHHHhhcCCccccCHHH
Confidence 01121 111111 12222244422211111
Q ss_pred HHcCcHHHHHHhhc-----CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHH
Q 003008 460 KEAGAIKYLVKLLD-----HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDIL 530 (858)
Q Consensus 460 ~~~g~i~~Lv~LL~-----~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L 530 (858)
. .+.-.-| ++|. .+++++|..-..+|.-|+.....|+.++..|+.+.+ .-+....+++++++.+-...
T Consensus 238 m-~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpil-RElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 238 M-AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPIL-RELHKWEEDEDIREACEQVV 310 (353)
T ss_pred H-hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHH-HHHhcCCCcHHHHHHHHHHH
Confidence 1 2333333 6665 357999999999999999999999999887776555 45554666777776554443
No 60
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00098 Score=75.59 Aligned_cols=283 Identities=20% Similarity=0.227 Sum_probs=191.6
Q ss_pred cCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc--
Q 003008 145 SGCINLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK-- 221 (858)
Q Consensus 145 ~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~-- 221 (858)
...|+.|+..+.+. =.+-|+.|+++|..+|. .+|..+... |+++++..|+..-+|+++..+++.+++++..+++
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 44678888887665 45668889999998775 678777766 5689999888766799999999999999976553
Q ss_pred -----hH-----------HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHH-HhCCCHHHHHHHHcc
Q 003008 222 -----HR-----------LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNIL-VEAGVIPKLAMLLKA 282 (858)
Q Consensus 222 -----~~-----------~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i-~~~g~i~~Lv~ll~~ 282 (858)
.+ ..|-..+-|..|+..+...+-.+|.++...|.++-.+ .+.+..+ .-.-+|..|+.+|+.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 12 1233677888999999999999999999999999665 4556655 445789999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHhcChhhHHHH-HHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHH
Q 003008 283 NVEGSKVIRKEARNALIELAKDDYYRILI-IEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANEL 361 (858)
Q Consensus 283 ~~~~~~~~~~~a~~aL~nl~~~~~~~~~i-~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~a 361 (858)
.. +.+|-.+...|..|..+..+.+.+ +=++++.. |..++ +
T Consensus 178 sr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer-LfsII----------------------e------------- 218 (970)
T KOG0946|consen 178 SR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFER-LFSII----------------------E------------- 218 (970)
T ss_pred hh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHH-HHHHH----------------------H-------------
Confidence 42 337778888888888754333332 22333332 33321 0
Q ss_pred HhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHH
Q 003008 362 LLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIAR 441 (858)
Q Consensus 362 L~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~ 441 (858)
.. |+ .+..-|...
T Consensus 219 ------eE----------------------------------------------------Gg---------~dGgIVveD 231 (970)
T KOG0946|consen 219 ------EE----------------------------------------------------GG---------LDGGIVVED 231 (970)
T ss_pred ------hc----------------------------------------------------CC---------CCCcchHHH
Confidence 00 00 000113345
Q ss_pred HHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCC---c------HHHH-HH---HHHHHHHhhc-------ChhHHHHH
Q 003008 442 AAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHS---S------DAVR-LA---TTHALERLSV-------SRGVCQIM 500 (858)
Q Consensus 442 a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~---~------~~v~-~~---a~~aL~~Ls~-------~~~~~~~l 500 (858)
|...|-| +-.+..++..|.+.+-||.|.++|... + ..-| .+ +..++..+.. ...+.+.+
T Consensus 232 CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l 311 (970)
T KOG0946|consen 232 CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL 311 (970)
T ss_pred HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5555566 446777888899999999999988632 1 1112 12 2233333332 12345688
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCC
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDP 536 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~ 536 (858)
...+++..|..++.++.-+.+++..+..++++..+.
T Consensus 312 ~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRg 347 (970)
T KOG0946|consen 312 VSSHLLDVLCTILMHPGVPADILTESIITVAEVVRG 347 (970)
T ss_pred HHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHh
Confidence 889999999998887767788888888888877653
No 61
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.0033 Score=71.35 Aligned_cols=356 Identities=13% Similarity=0.094 Sum_probs=192.4
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH----ccCCH-HHHHHHHHHHHHhhcCchhHHHH
Q 003008 109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL----RSESS-AACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 109 ~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL----~~~~~-~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
.-|+ ++.|.....|..++..++..+-- .+..|.|+..| ..+.+ .+++.++.+|+-++.+-+.....
T Consensus 97 ~tL~-~~ep~~~s~Aaq~va~IA~~ElP--------~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~ 167 (859)
T KOG1241|consen 97 RTLG-SPEPRRPSSAAQCVAAIACIELP--------QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLE 167 (859)
T ss_pred HHcC-CCCCCccchHHHHHHHHHHhhCc--------hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHH
Confidence 3454 55555555555566555542221 23445555554 33333 58899999999999865544333
Q ss_pred Hh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 184 AE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 184 ~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
-. ..++-.++.-++...-+..++..|+.+|.|-- +...| ....-..=.+...++...+++.+++..|..+|..+..-
T Consensus 168 ~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~L 247 (859)
T KOG1241|consen 168 QQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSL 247 (859)
T ss_pred HHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHH
Confidence 33 33556666644433227789999999999843 22222 11111122355667778888999999999999888643
Q ss_pred -cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhh----HHHHHHcCCcccccccccccccCCccCC
Q 003008 261 -KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY----RILIIEEGLVPVPMVGADAYKSFRPELH 335 (858)
Q Consensus 261 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~----~~~i~~~g~v~~~Lv~ll~~~~~~~~l~ 335 (858)
.+.-..-.+......-+.-+++.+ +.+.-.+...=+++|..+-. -....+.|..|. ...
T Consensus 248 yY~~m~~yM~~alfaitl~amks~~---deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~--~~~----------- 311 (859)
T KOG1241|consen 248 YYEFMEPYMEQALFAITLAAMKSDN---DEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS--SKY----------- 311 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhH-----------
Confidence 222222222223344455565542 33555666655667653211 122233332210 000
Q ss_pred CCCCCCCcchhhcccCCchhhHHHHHHhcc-CCCCCC-----ccchH--HHHhhhhhhhhhhHHHHhhcccccCCCCCCC
Q 003008 336 SWPSLPDGTEIERTSQGPSKFGANELLLGL-NVSDKN-----ANIDE--AKMNAMVGRSRQHFLVRIGAIESEDGRKPQS 407 (858)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL-~~~~~~-----~~i~~--~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l 407 (858)
..+ ......+-.|.++ ...+++ ..+.. +.+- +.+++.-. |
T Consensus 312 ----------fa~----~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL--------~l~A~~~~----D------ 359 (859)
T KOG1241|consen 312 ----------FAR----QALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCL--------MLFAQCVG----D------ 359 (859)
T ss_pred ----------HHH----HHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHH--------HHHHHHhc----c------
Confidence 000 0001111111111 111111 11111 1111 11222210 0
Q ss_pred CCCcccccccccccccHHHHH-HHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008 408 EFPIDRQLTLLPWIDGVARLV-LILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH 485 (858)
Q Consensus 408 ~~~~~~~~~~l~~~~~i~~Lv-~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~ 485 (858)
..++ .+-+++ +-++++|..-+..|+.+++. +-+-++.+-.-+..+++|.++.++.+++-.++..++|
T Consensus 360 --------~Iv~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAw 428 (859)
T KOG1241|consen 360 --------DIVP---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAW 428 (859)
T ss_pred --------cchh---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHH
Confidence 1111 222333 36778999999999999999 4444455555556889999999999888999999999
Q ss_pred HHHHhhc-ChhHH-HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 486 ALERLSV-SRGVC-QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 486 aL~~Ls~-~~~~~-~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
+|+.++. .++.+ ........++.++.-|. .+ +-+-..++|++.+|+.
T Consensus 429 tlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-De--Prva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 429 TLGRIADFLPEAIINQELLQSKLSALLEGLN-DE--PRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hC--chHHHHHHHHHHHHHH
Confidence 9999997 34322 22223344555555555 22 5677788888888874
No 62
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.13 E-value=5.5e-06 Score=59.40 Aligned_cols=41 Identities=29% Similarity=0.349 Sum_probs=38.7
Q ss_pred ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 452 NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 452 ~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
++++++.+++.|++++|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999973
No 63
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.08 E-value=0.0014 Score=72.56 Aligned_cols=245 Identities=17% Similarity=0.100 Sum_probs=166.4
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY 179 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~ 179 (858)
+..+++.++..|..+++..++..++.++. ..+ ...++..|+..|.+.++.++..++.+|..+-.
T Consensus 52 G~~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~----------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~---- 115 (410)
T TIGR02270 52 GKAATELLVSALAEADEPGRVACAALALL--AQE----------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG---- 115 (410)
T ss_pred hHhHHHHHHHHHhhCCChhHHHHHHHHHh--ccC----------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc----
Confidence 45678888888853566666665554443 111 11237889999999999999999999986543
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
.++.+.|+.+|++. ++.++..++.++.. ......+.+..+|++.++.++..++++|..+-
T Consensus 116 ------~~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~- 175 (410)
T TIGR02270 116 ------RQAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELP- 175 (410)
T ss_pred ------hHHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhc-
Confidence 24678899999887 99999888877765 11234678999999999999999999998764
Q ss_pred CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS 339 (858)
Q Consensus 260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~ 339 (858)
....++.|...+.+. .+.++..|+.+|..+.. +.- +. ++..+. ..
T Consensus 176 ---------~~~a~~~L~~al~d~---~~~VR~aA~~al~~lG~-~~A---------~~-~l~~~~--~~---------- 220 (410)
T TIGR02270 176 ---------RRLSESTLRLYLRDS---DPEVRFAALEAGLLAGS-RLA---------WG-VCRRFQ--VL---------- 220 (410)
T ss_pred ---------cccchHHHHHHHcCC---CHHHHHHHHHHHHHcCC-HhH---------HH-HHHHHH--hc----------
Confidence 235567777777664 45689999998876643 221 11 122210 00
Q ss_pred CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008 340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP 419 (858)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 419 (858)
. ..+....+..++... +
T Consensus 221 ---------~-g~~~~~~l~~~lal~-----------------------------~------------------------ 237 (410)
T TIGR02270 221 ---------E-GGPHRQRLLVLLAVA-----------------------------G------------------------ 237 (410)
T ss_pred ---------c-CccHHHHHHHHHHhC-----------------------------C------------------------
Confidence 0 000011111111111 0
Q ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
....+..|..++++++ ++..++.+|+.+.. ..+++.|+.++..+. +++.|..++..++.
T Consensus 238 ~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 GPDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred chhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 0125677888887654 89999999999777 679999999997654 99999999999997
No 64
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.04 E-value=0.013 Score=68.02 Aligned_cols=112 Identities=20% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcC
Q 003008 710 PLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEG 789 (858)
Q Consensus 710 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g 789 (858)
.++.+.-++.|+.+|...+. ..-+|.|=..+.++.+.+|.-+..|..-...+.+. -. -.....
T Consensus 945 eegtR~vvAECLGkL~l~ep---------------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~-~i-d~~lk~ 1007 (1233)
T KOG1824|consen 945 EEGTRNVVAECLGKLVLIEP---------------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQ-PI-DPLLKQ 1007 (1233)
T ss_pred hhhhHHHHHHHhhhHHhCCh---------------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCC-cc-CHHHHH
Confidence 34456678889988764332 12478888888999999998888777543333332 11 222233
Q ss_pred CchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcC
Q 003008 790 GIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQ 842 (858)
Q Consensus 790 ~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~ 842 (858)
-|.....++++++.+||+.|+.++...+.+.+... .+.+|.|+.++-++
T Consensus 1008 ~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI----rDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 1008 QIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI----RDLLPELLPLLYSE 1056 (1233)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH----HHHHHHHHHHHHHh
Confidence 34566788999999999999999988887765432 24456666555444
No 65
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00064 Score=75.59 Aligned_cols=409 Identities=16% Similarity=0.108 Sum_probs=220.7
Q ss_pred CcccCCCcHHHHHHHhcC---CCCHHHHHHHHHHHHHcccCCcccHHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHH
Q 003008 96 SSTFGDSYVALFVQMLGL---DYDPLDREQAVEALWKYSLGGKKCIDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLR 171 (858)
Q Consensus 96 ~~~~~~g~i~~lv~lL~~---s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~ 171 (858)
+.+++...++.++.+|+. ++++.+|+.++-+|+.+|.+.-. -.+.. ...+|-|+.+|.+..+-+|.-++|+|.
T Consensus 383 anvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~---g~~p~LpeLip~l~~~L~DKkplVRsITCWTLs 459 (885)
T KOG2023|consen 383 ANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQ---GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLS 459 (885)
T ss_pred HHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhh---hcccchHHHHHHHHHHhccCccceeeeeeeeHh
Confidence 356677777776665531 57889999999999999874322 22210 125788888889999999999999999
Q ss_pred HhhcC--chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHcc---CCH
Q 003008 172 SISSI--NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLED---ENM 244 (858)
Q Consensus 172 nLs~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~---~~~ 244 (858)
..+.- .+.+..... .++..|+..+=.. +..+++.|+.++..+-.+-. ..++ -.-.+..|+..+.. .+-
T Consensus 460 Rys~wv~~~~~~~~f~-pvL~~ll~~llD~--NK~VQEAAcsAfAtleE~A~--~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFK-PVLEGLLRRLLDS--NKKVQEAACSAFATLEEEAG--EELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred hhhhhHhcCChHhhhH-HHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHhhcce
Confidence 88752 222322221 1233333333344 89999999999877643211 1111 12223444444433 244
Q ss_pred HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccc
Q 003008 245 KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGA 324 (858)
Q Consensus 245 ~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~l 324 (858)
-+...|.++|+.=+...-++.+.++ -.+|+|++-...-+++.+. .-.-+.+|..++. ....|..| ...
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~Yiq-iLmPPLi~KW~~lsd~DKd-LfPLLEClSsia~-------AL~~gF~P--~~~- 602 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPAYIQ-ILMPPLIEKWELLSDSDKD-LFPLLECLSSIAS-------ALGVGFLP--YAQ- 602 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHHHHH-HhccHHHHHHHhcCcccch-HHHHHHHHHHHHH-------HHhccccc--cCH-
Confidence 5778888888887766666665544 3578888733221212221 1123333333332 23334333 111
Q ss_pred cccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHh-------ccCCCCCCccchHH----HHhhhhhhhhhhHHHH
Q 003008 325 DAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLL-------GLNVSDKNANIDEA----KMNAMVGRSRQHFLVR 393 (858)
Q Consensus 325 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~-------nL~~~~~~~~i~~~----~~~~li~~~~~~~L~~ 393 (858)
++-..|...|. ....++.-...+.. .+.-+-+ |+.
T Consensus 603 ----------------------------~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SG------Lae 648 (885)
T KOG2023|consen 603 ----------------------------PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSG------LAE 648 (885)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhH------HHH
Confidence 11111222222 11111100000000 0000000 110
Q ss_pred hhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhh
Q 003008 394 IGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLL 472 (858)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL 472 (858)
- + ....-..+.+.+...-+..-+.++-++||+.|...|+.++. +.+.. .-.-+..++.|..=+
T Consensus 649 g------------L---g~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 649 G------------L---GSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHV-IPNLADFLPILGANL 712 (885)
T ss_pred H------------h---hhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHhhcC
Confidence 0 0 00000223334455556667788899999999999999653 22211 111234455555556
Q ss_pred cCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCc
Q 003008 473 DHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVN 550 (858)
Q Consensus 473 ~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~ 550 (858)
..++..+..+|+||++.++. ..+.+..+. ..+..|+..++.+..+..+.+..+.+++.|....++.... -.+..
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~--~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp--~l~~f 788 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVS--PVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP--HLDSF 788 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHH--HHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch--hHHHH
Confidence 66678899999999999996 333333322 3566777788878888899999999999998744433221 11111
Q ss_pred CcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008 551 GSEKGLDAAESLDPSIELTGN-VIEAAVS 578 (858)
Q Consensus 551 ~i~~Li~ll~s~d~~v~~~a~-~l~~L~~ 578 (858)
.-|+..++=.-.|.+-+.+|. .+|+++.
T Consensus 789 ~~pWc~sl~~i~DneEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 789 MRPWCTSLRNIDDNEEKESAFRGLCNMIN 817 (885)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHhee
Confidence 222333333334555555666 6777654
No 66
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0024 Score=72.52 Aligned_cols=410 Identities=15% Similarity=0.128 Sum_probs=233.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVA 184 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~ 184 (858)
.-|..||. |.....+..|.+-+..+-....+ + +...|..++...+.+.+++...-.-|..-+....+-..+
T Consensus 38 ~dL~~lLd-Snkd~~KleAmKRIia~iA~G~d-----v--S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL- 108 (968)
T KOG1060|consen 38 DDLKQLLD-SNKDSLKLEAMKRIIALIAKGKD-----V--SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL- 108 (968)
T ss_pred HHHHHHHh-ccccHHHHHHHHHHHHHHhcCCc-----H--HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-
Confidence 45888998 65446677777666555443333 1 345688899999999999987766666666655443332
Q ss_pred hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-Cc
Q 003008 185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SN 263 (858)
Q Consensus 185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~ 263 (858)
-|..+-+-|+.+ |+.++-.|+++|..+ |..++.-=.+-++-++.....+-+|..|+.++-.|-.-+ +.
T Consensus 109 ---SIntfQk~L~Dp--N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 109 ---SINTFQKALKDP--NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred ---eHHHHHhhhcCC--cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhh
Confidence 366777788888 999998888887543 222222112233444556778899999999999997654 44
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG 343 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~ 343 (858)
+..+.+ .+-.+|... ++.+.-.|+.+.-.+|-+. -+ |+.
T Consensus 178 k~qL~e-----~I~~LLaD~---splVvgsAv~AF~evCPer--ld-----------LIH-------------------- 216 (968)
T KOG1060|consen 178 KDQLEE-----VIKKLLADR---SPLVVGSAVMAFEEVCPER--LD-----------LIH-------------------- 216 (968)
T ss_pred HHHHHH-----HHHHHhcCC---CCcchhHHHHHHHHhchhH--HH-----------Hhh--------------------
Confidence 434432 444466543 4446667777776666431 10 110
Q ss_pred chhhcccCCchhhHHHHHHhccCCCCCCccchHHH----HhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc----
Q 003008 344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK----MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL---- 415 (858)
Q Consensus 344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~----~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~---- 415 (858)
.-...||++-.+. ++.+ ++.++. ...+.|.+........+.-. ..++..+.+
T Consensus 217 -------------knyrklC~ll~dv-----deWgQvvlI~mL~R-YAR~~l~~P~~~~~~~e~n~-~~~~~~~~~~~~~ 276 (968)
T KOG1060|consen 217 -------------KNYRKLCRLLPDV-----DEWGQVVLINMLTR-YARHQLPDPTVVDSSLEDNG-RSCNLKDKYNEIR 276 (968)
T ss_pred -------------HHHHHHHhhccch-----hhhhHHHHHHHHHH-HHHhcCCCccccccccccCc-ccccccccccccC
Confidence 0011133332221 1111 111111 00001111100000000000 000000000
Q ss_pred ccccccccHH----HHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 003008 416 TLLPWIDGVA----RLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS 491 (858)
Q Consensus 416 ~~l~~~~~i~----~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls 491 (858)
..+.....+. ..-.+|.+.++.+...+|++.++++-..+. .+.++.|+.||+++ ..+|......+..++
T Consensus 277 ~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 277 TPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRSN-REVQYVVLQNIATIS 349 (968)
T ss_pred CCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhcC-CcchhhhHHHHHHHH
Confidence 1112122333 334577889999999999999998754333 34688999998764 566666555555555
Q ss_pred c-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008 492 V-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTG 570 (858)
Q Consensus 492 ~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a 570 (858)
. .+. + .-|.+-...-.+.++..++..-..+|.+|...+ .. ...++-+..+..+.|.++...+
T Consensus 350 ~~~~~----l----F~P~lKsFfv~ssDp~~vk~lKleiLs~La~es---ni------~~ILrE~q~YI~s~d~~faa~a 412 (968)
T KOG1060|consen 350 IKRPT----L----FEPHLKSFFVRSSDPTQVKILKLEILSNLANES---NI------SEILRELQTYIKSSDRSFAAAA 412 (968)
T ss_pred hcchh----h----hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc---cH------HHHHHHHHHHHhcCchhHHHHH
Confidence 3 111 1 234444444446666778888888899998722 11 1135566777888887655555
Q ss_pred H-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 571 N-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 571 ~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
+ +|..++..... +..-.+.-|+.++++++..|...++..+..|.+.++.
T Consensus 413 V~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~ 462 (968)
T KOG1060|consen 413 VKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA 462 (968)
T ss_pred HHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence 5 77666543222 1233567799999999999999999999999876553
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0052 Score=71.53 Aligned_cols=347 Identities=16% Similarity=0.153 Sum_probs=207.5
Q ss_pred HHHHHHHHHHcccCCc------ccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHH
Q 003008 120 REQAVEALWKYSLGGK------KCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSINVYRDLVAECGAIEEI 192 (858)
Q Consensus 120 ~~~a~~~L~~la~~~~------~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~L 192 (858)
..-++.+|.|+...+. +.... --|..+.++..++. +++.++..|+..+..+..+.++-..|++.|.+..|
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~---lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEIL---LIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhh---hhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHH
Confidence 4557888888876655 22112 24677788887765 47788888999999999899999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHcCCc--CchHH--H
Q 003008 193 TGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE-DENMKVKEAAGGVLANLALSK--SNHNI--L 267 (858)
Q Consensus 193 v~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~nL~~~~--~~~~~--i 267 (858)
+.+|.+ -|..+..++.+|+.|+++++.-..-.+.|++.-+..++- +.++..+.+++..|..|..++ ..|.. +
T Consensus 1819 L~lLHS---~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1819 LTLLHS---QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHhc---ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 999987 578999999999999999987666667777777777764 447889999999999998764 22221 1
Q ss_pred Hh----------CCCHHHHHHHHccCCCCCH-----HHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008 268 VE----------AGVIPKLAMLLKANVEGSK-----VIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 268 ~~----------~g~i~~Lv~ll~~~~~~~~-----~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
++ ....+..|.++...++..+ ..+......+..+..+ +.+..--. |-++.
T Consensus 1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~------~y~~QQk~-p~~~W-------- 1960 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGK------LYEQQQKD-PTVKW-------- 1960 (2235)
T ss_pred HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHH------HHHHhccC-Ccccc--------
Confidence 11 1233666666654433211 1112222222222211 00000000 11111
Q ss_pred cCCCCCCCCCcch----------------------hhcccCCchhhHHHHHHh-ccCCCCCCccchHHHHhhhhhhhhhh
Q 003008 333 ELHSWPSLPDGTE----------------------IERTSQGPSKFGANELLL-GLNVSDKNANIDEAKMNAMVGRSRQH 389 (858)
Q Consensus 333 ~l~~~~~~~~~~~----------------------~~~~~~~~~~~~a~~aL~-nL~~~~~~~~i~~~~~~~li~~~~~~ 389 (858)
-++....|.. .+|+.+ .-..+.+.-+. .++.........+--..++++
T Consensus 1961 ---~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk-~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~----- 2031 (2235)
T KOG1789|consen 1961 ---NTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPK-LFLTELLEKVLELMSRPTPEQHELDLLTKAFVE----- 2031 (2235)
T ss_pred ---cCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHH-HHHHHHHHHHHHHhcCCCcccchhHHHHHHHHH-----
Confidence 0000000000 011111 00011111111 111111111111101112222
Q ss_pred HHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHH
Q 003008 390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLV 469 (858)
Q Consensus 390 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv 469 (858)
|.|.. |.- -+.++.-|.+|.++.-....+..+-..|.+.|..++.+.-...++.....+..++
T Consensus 2032 -L~r~h---------------P~L-ADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m 2094 (2235)
T KOG1789|consen 2032 -LVRHH---------------PNL-ADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIM 2094 (2235)
T ss_pred -HHHhC---------------cch-hhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhH
Confidence 33322 110 1445556788888888777666666889999999999999999999988888899
Q ss_pred HhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHHhhc
Q 003008 470 KLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVNTLK 514 (858)
Q Consensus 470 ~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~ 514 (858)
..+...- ...--|+.+|..+.. ..+......+.|.+|.|+.+|.
T Consensus 2095 ~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2095 KSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred HHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 8886543 333367788888876 3555667778999999999997
No 68
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.89 E-value=4.6e-05 Score=65.21 Aligned_cols=87 Identities=26% Similarity=0.371 Sum_probs=72.1
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 424 VARLVLIL-GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 424 i~~Lv~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
++.|+..| +++++.++..++++|+++.. ..+++.|+.+++++++.||..|+++|+.+. .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 46788888 89999999999999996543 357999999999999999999999999885 2
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHH
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILG 531 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~ 531 (858)
...++.|..++.++ .+..++..+..+|+
T Consensus 61 ~~~~~~L~~~l~~~-~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDD-DDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CcHHHHHHHHhhcC
Confidence 34789999999843 45777888888774
No 69
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.00046 Score=75.38 Aligned_cols=320 Identities=16% Similarity=0.122 Sum_probs=182.8
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIM 500 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l 500 (858)
++.+++.+.-+++.|..++..||..|+|+++-........-...-..|.++..+.+..|+..| ..|-.+-+ +.+
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLik-----dIV 156 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIK-----DIV 156 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHH-----Hhc
Confidence 347888889999999999999999999976533333333334456677777777777776554 33333322 111
Q ss_pred HHc---CChHHHHHhhcC--CCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008 501 EAE---GVVHPLVNTLKN--LDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE 574 (858)
Q Consensus 501 ~~~---g~i~~Li~lL~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~ 574 (858)
.+. =-++.++.+|+. ...++..|.....-|..+-. .+..+..-.-...++.|...|+++.++++..+- ++.
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds---~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~ 233 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS---VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLS 233 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc---CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 111 124444444432 12236677776665555533 111111111123467788999999999986665 666
Q ss_pred HhhccccchhhhH-hhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008 575 AAVSETTTSYGKV-LDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI 653 (858)
Q Consensus 575 ~L~~~~~~~~~~i-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~ 653 (858)
+...+-.+. ... .-...++.++.-+.++++.+|..|+..+.....-.+..-..
T Consensus 234 ~fL~eI~s~-P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~------------------------- 287 (675)
T KOG0212|consen 234 EFLAEIRSS-PSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL------------------------- 287 (675)
T ss_pred HHHHHHhcC-ccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh-------------------------
Confidence 655433332 222 23456788999999999999999988776665433221111
Q ss_pred CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008 654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD 733 (858)
Q Consensus 654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 733 (858)
...+.+..++....+.... ..+..+.+ +-..+.++.+...
T Consensus 288 --------------------~~s~il~~iLpc~s~~e~~-~i~~~a~~---------------~n~~l~~l~s~~~---- 327 (675)
T KOG0212|consen 288 --------------------YLSGILTAILPCLSDTEEM-SIKEYAQM---------------VNGLLLKLVSSER---- 327 (675)
T ss_pred --------------------hhhhhhhhcccCCCCCccc-cHHHHHHH---------------HHHHHHHHHhhhh----
Confidence 1111122222221111000 00111100 0001111111100
Q ss_pred CCccchhhhhhhc-chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHH
Q 003008 734 FENPINMEVTLYE-AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAI 812 (858)
Q Consensus 734 ~~~~~~~~i~~~~-~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~a 812 (858)
.+..+ +.| .+..+.+.+.++..++|.++..=+..|....+ +.-........+.|+.-|++.+++|...++..
T Consensus 328 ----~~~~i-d~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p--~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 328 ----LKEEI-DYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP--GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred ----hcccc-chHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc--chhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 01011 322 36666678889999999999887777655443 23344556667888999999999999999999
Q ss_pred HHhhhcCccc
Q 003008 813 LYNLSMDSEN 822 (858)
Q Consensus 813 L~nL~~~~~~ 822 (858)
|.+++.++..
T Consensus 401 la~i~~s~~~ 410 (675)
T KOG0212|consen 401 LASICSSSNS 410 (675)
T ss_pred HHHHhcCccc
Confidence 9999988665
No 70
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.82 E-value=2.7e-05 Score=55.82 Aligned_cols=41 Identities=27% Similarity=0.375 Sum_probs=38.2
Q ss_pred CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 219 DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 219 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
+++++..+++.|++++|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999973
No 71
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.79 E-value=0.0031 Score=69.04 Aligned_cols=155 Identities=26% Similarity=0.299 Sum_probs=122.1
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
.+..++.++.+++..++..++..++.... .-+++.|..++.+.++.+|..|+.+|+.+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~---------- 103 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD---------- 103 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------
Confidence 67888999999999999999999888665 5689999999999999999999999988774
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhH------------HHHH
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSI------------ELTG 570 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v------------~~~a 570 (858)
...++.|+.++.. +.+..++..+..+|..+.. ...+.+++..+.+.+..+ +..+
T Consensus 104 ~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~-------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 PEAVPPLVELLEN-DENEGVRAAAARALGKLGD-------------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCc-------------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 2358899999983 4558899999999999877 234888888888766332 2222
Q ss_pred H-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 571 N-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 571 ~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
. .+ ..+-+...++.+..++.+.+..++..|..+|..+....
T Consensus 170 ~~~l-----------~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 170 AEAL-----------GELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHH-----------HHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 2 11 22333456788999999999999999999998886654
No 72
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0017 Score=71.14 Aligned_cols=357 Identities=15% Similarity=0.110 Sum_probs=208.6
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-h
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-Y 179 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~ 179 (858)
++.++.++.-++ +.|..+|.+|...|.|++......+ +.-.......+.++-.+.+..++. ++..|-.+-.+-. -
T Consensus 83 ~~iv~Pv~~cf~-D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 83 EKIVPPVLNCFS-DQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHhhHHHHHhcc-CccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 566777888886 8888999999999999986544321 111123344455555555555554 6666665544321 1
Q ss_pred HH-HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 180 RD-LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 180 ~~-~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
+. .+--.+.||.|-+-+..- ++.++...+.-|.-|=..++-...---...++-|+.+|.+.+++++..+-.+|.++-
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred cccccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 11 222244577777777776 888998888888777655543322223456778899999999999988777776653
Q ss_pred CCcCchHHH-HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008 259 LSKSNHNIL-VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW 337 (858)
Q Consensus 259 ~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~ 337 (858)
..-.+.... --...++.++.-+.+. .+.++..|..-+..+..-+...-...-.|++..
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss---~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~------------------ 295 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSS---EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA------------------ 295 (675)
T ss_pred HHHhcCccccCcccchhhccccccCC---cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh------------------
Confidence 221122221 2234577888877654 344777776665555543221111111221111
Q ss_pred CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHH--HHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008 338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEA--KMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL 415 (858)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~--~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~ 415 (858)
+..+..+.++..+.+. .++. +.+...+....+
T Consensus 296 ------------------------iLpc~s~~e~~~i~~~a~~~n~-------~l~~l~s~~~~~--------------- 329 (675)
T KOG0212|consen 296 ------------------------ILPCLSDTEEMSIKEYAQMVNG-------LLLKLVSSERLK--------------- 329 (675)
T ss_pred ------------------------cccCCCCCccccHHHHHHHHHH-------HHHHHHhhhhhc---------------
Confidence 1111111111001111 0010 012222211111
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChh
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRG 495 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~ 495 (858)
..+-....+..|..++.++..+.+..+..-+..+-....++........-+.|..-|++.+++|...+...+.+++.+++
T Consensus 330 ~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 330 EEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred cccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 11222337788889999999999999999888877666666666677888899999999999999999999999999655
Q ss_pred HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
.+... ..+..|+.+.. ++...+...+..++..+|.
T Consensus 410 ~~~~~---~fl~sLL~~f~--e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 410 SPNLR---KFLLSLLEMFK--EDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred cccHH---HHHHHHHHHHh--hhhHHHHhhhhHHHHHHHH
Confidence 43210 12334444444 2234455567666666664
No 73
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.01 Score=67.58 Aligned_cols=370 Identities=15% Similarity=0.098 Sum_probs=205.6
Q ss_pred CCCcHHHHHHHhcC-C-----CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 003008 100 GDSYVALFVQMLGL-D-----YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSI 173 (858)
Q Consensus 100 ~~g~i~~lv~lL~~-s-----~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nL 173 (858)
-.+.+|.|+++|.. + +|+..-..|..+|.-++.- +.+.|+ .-++|-+=+-+++++-.-|+.|+.+++.+
T Consensus 317 ~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv--~~Vl~Fiee~i~~pdwr~reaavmAFGSI 391 (859)
T KOG1241|consen 317 LQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIV--PHVLPFIEENIQNPDWRNREAAVMAFGSI 391 (859)
T ss_pred HhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccch--hhhHHHHHHhcCCcchhhhhHHHHHHHhh
Confidence 35778889998842 2 2234445555566555532 123454 24454444577888889999999999998
Q ss_pred hcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchH-HHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008 174 SSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHR-LKIANTDILPLLIKSLEDENMKVKEAA 250 (858)
Q Consensus 174 s~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a 250 (858)
-..+ +.+..-...+++|.++.++.++ ...++..++|+|+.++.. ++.+ ...-..+.++.+++-|.+ .|.+..++
T Consensus 392 l~gp~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~ 468 (859)
T KOG1241|consen 392 LEGPEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNV 468 (859)
T ss_pred hcCCchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHH
Confidence 7765 3555555577899999999977 888889999999999854 3222 222235556666666655 57899999
Q ss_pred HHHHHHHcCC-----cCc-hHHHHhCCCHHHHHH-HH---ccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCccc
Q 003008 251 GGVLANLALS-----KSN-HNILVEAGVIPKLAM-LL---KANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPV 319 (858)
Q Consensus 251 ~~~L~nL~~~-----~~~-~~~i~~~g~i~~Lv~-ll---~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~ 319 (858)
+|++.+|+.. .++ ...... ...+.++. |+ ...+.....+|..|-.+|..+..+ ++....++..=....
T Consensus 469 CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i 547 (859)
T KOG1241|consen 469 CWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI 547 (859)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 9999999732 111 111221 22333333 33 221112234777888889888874 444433322111110
Q ss_pred ccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHh-ccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccc
Q 003008 320 PMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLL-GLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIE 398 (858)
Q Consensus 320 ~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~-nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~ 398 (858)
+.++ .++.. . -++..+. ..-..++.+++...|..+.+.+.
T Consensus 548 -l~kl-------------------------------~q~i~--~~~l~~~dr---~q~~eLQs~Lc~~Lq~i~rk~~~-- 588 (859)
T KOG1241|consen 548 -LEKL-------------------------------DQTIS--SQILSLADR---AQLNELQSLLCNTLQSIIRKVGS-- 588 (859)
T ss_pred -HHHH-------------------------------HHHHH--HHhccHhhH---HHHHHHHHHHHHHHHHHHHHccc--
Confidence 1111 00000 0 0110110 00012233333222222333331
Q ss_pred ccCCCCCCCCCCcccccccccc-cccHHHHHHHhCC-CCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhh-cCC
Q 003008 399 SEDGRKPQSEFPIDRQLTLLPW-IDGVARLVLILGL-EDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLL-DHS 475 (858)
Q Consensus 399 ~~~~~~~~l~~~~~~~~~~l~~-~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL-~~~ 475 (858)
+.... +..+..++.++++ .+..+.+.|..+++.+..+-..+..-.-....|.|..-| +..
T Consensus 589 -----------------~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~ 651 (859)
T KOG1241|consen 589 -----------------DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ 651 (859)
T ss_pred -----------------cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence 01111 2266778888888 445566777777776543333333333455677777767 444
Q ss_pred cHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhc
Q 003008 476 SDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRIL 534 (858)
Q Consensus 476 ~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~ 534 (858)
+..|-..+++..+.|+..-+-.-...-.+.+..|++.|.++..+-.+|-...++.+.++
T Consensus 652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIA 710 (859)
T KOG1241|consen 652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIA 710 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHH
Confidence 56777788888888886211111112234677888888876655566666666655554
No 74
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.70 E-value=0.0061 Score=66.75 Aligned_cols=157 Identities=22% Similarity=0.263 Sum_probs=123.9
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhcChhHHHH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSVSRGVCQI 499 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~ 499 (858)
+..++.+..++.+.++.++..|+.+|+.+.. ..+++.|+.++. +++..+|..++++|+.+..
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------- 135 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGD------- 135 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-------
Confidence 3488999999999999999999999999766 568999999998 6889999999999999874
Q ss_pred HHHcCChHHHHHhhcCCC----------ccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHH
Q 003008 500 MEAEGVVHPLVNTLKNLD----------ISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELT 569 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~ 569 (858)
...+.+++..+.+.. ....++..+...|..+.. ...++.++..+.+.+..++..
T Consensus 136 ---~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-------------~~~~~~l~~~l~~~~~~vr~~ 199 (335)
T COG1413 136 ---ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-------------PEAIPLLIELLEDEDADVRRA 199 (335)
T ss_pred ---hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-------------hhhhHHHHHHHhCchHHHHHH
Confidence 234778888887433 112466667777777765 335888999999999999988
Q ss_pred HH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 570 GN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 570 a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
+. ++..+..+. ....+.+...+++.+..++..++..|+.+-
T Consensus 200 Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 200 AASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred HHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 88 776554433 134578888999999999999988887764
No 75
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.054 Score=55.73 Aligned_cols=165 Identities=12% Similarity=0.168 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHcccCCccc-HHH--HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHH
Q 003008 115 YDPLDREQAVEALWKYSLGGKKC-IDY--IMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEE 191 (858)
Q Consensus 115 ~d~~~~~~a~~~L~~la~~~~~~-~~~--ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~ 191 (858)
+|..++.-++..++.+..+.+.+ +.. .+...|.++.++...-.+++++...|...+..|+..++.-..|.+......
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDd 173 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDD 173 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCCh
Confidence 45567777777777776654421 112 224789999999999999999999999999999999988888887766654
Q ss_pred H--HHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHH
Q 003008 192 I--TGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNIL 267 (858)
Q Consensus 192 L--v~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i 267 (858)
+ ..+.... +.-.+......+..++ ..+......-..|.+..|..=++. .+.-++..+......|+....++..+
T Consensus 174 lhlrnlaakc--ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefl 251 (524)
T KOG4413|consen 174 LHLRNLAAKC--NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFL 251 (524)
T ss_pred HHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhc
Confidence 4 3333333 5566667777777775 556556666678888877777766 46678889999999999999999999
Q ss_pred HhCCCHHHHHHHHc
Q 003008 268 VEAGVIPKLAMLLK 281 (858)
Q Consensus 268 ~~~g~i~~Lv~ll~ 281 (858)
.+.|.|..+-....
T Consensus 252 aQeglIdlicnIIs 265 (524)
T KOG4413|consen 252 AQEGLIDLICNIIS 265 (524)
T ss_pred chhhHHHHHHHHhh
Confidence 99898888777764
No 76
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.66 E-value=0.03 Score=61.43 Aligned_cols=171 Identities=12% Similarity=0.024 Sum_probs=123.5
Q ss_pred CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHH
Q 003008 451 INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDIL 530 (858)
Q Consensus 451 ~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L 530 (858)
.+++.+..+.-....+.+..++-+++.+||..+..+++-+..+.+.-+.+.+.+.--.++.-|........-|+.|.+.+
T Consensus 13 ~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkli 92 (371)
T PF14664_consen 13 RHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLI 92 (371)
T ss_pred hCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHH
Confidence 34444444444445555554444555999999999999999988888888888765556665654444566788888888
Q ss_pred HHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHH
Q 003008 531 GRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQR 609 (858)
Q Consensus 531 ~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~ 609 (858)
..+..-. ......+.+.+..++...++++...+..++ .++.++--.. +.+..+||+..|++.+-++...+.+
T Consensus 93 R~~l~~~----~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~ 165 (371)
T PF14664_consen 93 RAFLEIK----KGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISE 165 (371)
T ss_pred HHHHHhc----CCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHH
Confidence 8776521 111234566788899999988777777777 8887764443 4578899999999999887767888
Q ss_pred HHHHHHHHhhcCCcchHHH
Q 003008 610 KAASILEFITIIDPSMDTI 628 (858)
Q Consensus 610 ~a~~~L~~l~~~~~~~~~~ 628 (858)
..+.++-.+...+..+.-+
T Consensus 166 ~l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 166 SLLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHHHHhCCcchhhhh
Confidence 8889998888887777655
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.62 E-value=0.22 Score=56.81 Aligned_cols=149 Identities=13% Similarity=0.157 Sum_probs=92.4
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHH---HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC---QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~---~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
.+..+...|+++++.+|++|+..++.++.--..+ +.+...|. .|...|. ++.+++.-....++..+... ...
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylg--eeypEvLgsILgAikaI~nv-igm 874 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLG--EEYPEVLGSILGAIKAIVNV-IGM 874 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcC--cccHHHHHHHHHHHHHHHHh-ccc
Confidence 4566677899999999999999999888632222 22333332 2344554 33455555544444443320 000
Q ss_pred ccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc---cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHH
Q 003008 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS---ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE 616 (858)
Q Consensus 541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~---~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~ 616 (858)
.|..=--.+.+|.|.-.|++.+..++.|++ .+..++. +..+..+.|+ .---|+++|.+.+.++++.|..+++
T Consensus 875 -~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG 950 (1172)
T KOG0213|consen 875 -TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFG 950 (1172)
T ss_pred -cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000001135688888899999999999998 5555542 2222113332 2235889999999999999999999
Q ss_pred HhhcC
Q 003008 617 FITII 621 (858)
Q Consensus 617 ~l~~~ 621 (858)
+++..
T Consensus 951 ~Iaka 955 (1172)
T KOG0213|consen 951 YIAKA 955 (1172)
T ss_pred HHHHh
Confidence 99853
No 78
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.58 E-value=0.00029 Score=60.23 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=66.6
Q ss_pred hHHHHHHh-ccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHH
Q 003008 748 IPRLIEQI-KSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAI 826 (858)
Q Consensus 748 i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i 826 (858)
|+.|++.| +++++.+|..|+.+|+++-.. ..++.|+++++++++.||..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57899988 799999999999999865322 23599999999999999999999999873
Q ss_pred HHcCchHHHHHhhhcCChhH--HHHHHHH
Q 003008 827 IAAGAVPALRRIVLSQRPQW--TRALRLL 853 (858)
Q Consensus 827 ~~~g~v~~L~~ll~~~~~~~--~~al~~l 853 (858)
...+++.|.+++.+.+... ..|..+|
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 3346789999887765444 6666665
No 79
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.012 Score=60.45 Aligned_cols=206 Identities=13% Similarity=0.123 Sum_probs=146.5
Q ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHH--HHhhcCCcHHHHHHHHHHHHHhhc-ChhH
Q 003008 420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYL--VKLLDHSSDAVRLATTHALERLSV-SRGV 496 (858)
Q Consensus 420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~L--v~LL~~~~~~v~~~a~~aL~~Ls~-~~~~ 496 (858)
+.+..+.++..+..+|.++-..|...+..++..+..-..+++......+ .+|--..+.-+|......+..+.+ +++.
T Consensus 126 NaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpes 205 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPES 205 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHH
Confidence 3457788888899999999999999999999999988888888877654 444445566677777788888877 8888
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHHHHHH-HH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIELTGN-VI 573 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a~-~l 573 (858)
.....+.|.+..|..=++ +.+|.-+...+......|.. ....+..+.+.|.+..+.+.+.. .||--+..++ ..
T Consensus 206 aneckkSGLldlLeaElk-GteDtLVianciElvteLae---teHgreflaQeglIdlicnIIsGadsdPfekfralmgf 281 (524)
T KOG4413|consen 206 ANECKKSGLLDLLEAELK-GTEDTLVIANCIELVTELAE---TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF 281 (524)
T ss_pred HhHhhhhhHHHHHHHHhc-CCcceeehhhHHHHHHHHHH---HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH
Confidence 888899999999988888 55566677777777777776 44445555556666666666653 4565556555 33
Q ss_pred HHhhccc----cchhhhHhhc--cchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHh
Q 003008 574 EAAVSET----TTSYGKVLDS--VFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIIS 630 (858)
Q Consensus 574 ~~L~~~~----~~~~~~i~~~--g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 630 (858)
..+.... ... +.+.+. -.|...++...+.+++.+..|..+++.+-.+.+....+.+
T Consensus 282 gkffgkeaimdvse-eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllk 343 (524)
T KOG4413|consen 282 GKFFGKEAIMDVSE-EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLK 343 (524)
T ss_pred HHHhcchHHhhcCH-HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhc
Confidence 3222211 111 223222 3455566777889999999999999999887777666643
No 80
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.50 E-value=0.011 Score=66.84 Aligned_cols=180 Identities=12% Similarity=0.095 Sum_probs=118.5
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Chhh---HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISI-NEHM---RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV 496 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~---~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~ 496 (858)
.+.+|.|..+|++.+++++.++...++.++. .++. |+-+. ..--|+.+|++.+.++|++|...++-++.-
T Consensus 882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka--- 955 (1172)
T KOG0213|consen 882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA--- 955 (1172)
T ss_pred hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh---
Confidence 4578899999999999999999999999764 4442 22221 233578889999999999999999998851
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
+--+.++..|++-|+..+ -+.+...+.+++-.+..+ .+...+|.|++--..++..|+...+ +++.
T Consensus 956 ---IGPqdVLatLlnnLkvqe--Rq~RvcTtvaIaIVaE~c---------~pFtVLPalmneYrtPe~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 956 ---IGPQDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETC---------GPFTVLPALMNEYRTPEANVQNGVLKALSF 1021 (1172)
T ss_pred ---cCHHHHHHHHHhcchHHH--HHhchhhhhhhhhhhhhc---------CchhhhHHHHhhccCchhHHHHhHHHHHHH
Confidence 111223444444444111 222333444444444422 2233577777766667778887777 8888
Q ss_pred hhccccch-hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 576 AVSETTTS-YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 576 L~~~~~~~-~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
+.+.-... +.-+ .-..|.|-..|-+.+..-+..|..++..++.+.
T Consensus 1022 ~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred HHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 87533221 0112 345678888888999999999999999998764
No 81
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.038 Score=62.11 Aligned_cols=341 Identities=14% Similarity=0.077 Sum_probs=191.1
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008 146 GCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~ 225 (858)
..+..++.-+..+++.+++....+|..+....+.... .-..+.+.+++..+ +..-+..++..++.+..+. .-..
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~~--~~~~~~~aa~~~ag~v~g~-~i~~ 169 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTST--KIAERAGAAYGLAGLVNGL-GIES 169 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhccc--cHHHHhhhhHHHHHHHcCc-HHhh
Confidence 3556677777778888888777777666443221111 11356777788866 7777777888877776544 3344
Q ss_pred HHhCCCHHHHHHHHccCCHHHHHH-HHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 226 IANTDILPLLIKSLEDENMKVKEA-AGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 226 i~~~g~i~~Lv~ll~~~~~~~~~~-a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
+.+.+.+..|.+..+.......+. +.-+....+..-. ...+.+.++.+..+|.+-.+..+.+|+.|..+...+-..
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~ 246 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC 246 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh
Confidence 556777778877777664433332 2222221111100 223445556666655443333344444443332211110
Q ss_pred hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhh
Q 003008 305 DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVG 384 (858)
Q Consensus 305 ~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~ 384 (858)
....+++.
T Consensus 247 -------~~~~aVK~----------------------------------------------------------------- 254 (569)
T KOG1242|consen 247 -------LSAYAVKL----------------------------------------------------------------- 254 (569)
T ss_pred -------cCcchhhH-----------------------------------------------------------------
Confidence 01111111
Q ss_pred hhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCc
Q 003008 385 RSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGA 464 (858)
Q Consensus 385 ~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~ 464 (858)
.+++++.-+....+..+..++..|+.+..+...+-.......
T Consensus 255 --------------------------------------llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~i 296 (569)
T KOG1242|consen 255 --------------------------------------LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDL 296 (569)
T ss_pred --------------------------------------hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHh
Confidence 122222222222445566677777776666666666677889
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008 465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF 544 (858)
Q Consensus 465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 544 (858)
||.|..-|.+.++++|.++..++.+++.--++.... -.+|.|++.+.+++. . .-.|+..|..+. + .
T Consensus 297 iP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~---~~ip~Lld~l~dp~~--~----~~e~~~~L~~tt--F--V- 362 (569)
T KOG1242|consen 297 IPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ---KIIPTLLDALADPSC--Y----TPECLDSLGATT--F--V- 362 (569)
T ss_pred hHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH---HHHHHHHHHhcCccc--c----hHHHHHhhccee--e--e-
Confidence 999999999999999999999999998844433321 147888888886661 1 223344444311 0 0
Q ss_pred ccccCcC----cHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008 545 YDIPVNG----SEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEF 617 (858)
Q Consensus 545 ~i~~~~~----i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~ 617 (858)
...+.-. +|.+.+-+...+.+.++.++ .+.|++.--+.. ..+.. -..+|.|-..+.+..|+++..++++|+.
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp-~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~ 441 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP-KDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGA 441 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH-HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Confidence 0111112 33444445555666777777 888887543222 22211 1234555555566789999999999977
Q ss_pred hhc
Q 003008 618 ITI 620 (858)
Q Consensus 618 l~~ 620 (858)
+..
T Consensus 442 l~e 444 (569)
T KOG1242|consen 442 LLE 444 (569)
T ss_pred HHH
Confidence 643
No 82
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.46 E-value=0.059 Score=59.11 Aligned_cols=170 Identities=14% Similarity=0.088 Sum_probs=128.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCchhHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
.+.+..++= +++..+|..+.++++.+..+...- +.+. +.+.--.++..|..+ +...|++|....+.+..-+....
T Consensus 27 ~~~i~~~lL-~~~~~vraa~yRilRy~i~d~~~l-~~~~-~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 27 GERIQCMLL-SDSKEVRAAGYRILRYLISDEESL-QILL-KLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHC-CCcHHHHHHHHHHHHHHHcCHHHH-HHHH-HcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 344444332 445899999999999998877763 3444 677766677777665 56789999999988865432221
Q ss_pred HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc
Q 003008 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK 261 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~ 261 (858)
. .-.|++..++.+..+. +...+..|..+|+.++..+ -..+.+.||++.|++.+.++..++.+..+.++..+-..+
T Consensus 104 ~-~~~~vvralvaiae~~--~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 E-IPRGVVRALVAIAEHE--DDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred c-CCHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 1 2456789999999997 8899999999999999643 245668999999999998887678899999999999999
Q ss_pred CchHHHHhCCCHHHHHHHHc
Q 003008 262 SNHNILVEAGVIPKLAMLLK 281 (858)
Q Consensus 262 ~~~~~i~~~g~i~~Lv~ll~ 281 (858)
..|..+...--++.++.-+.
T Consensus 179 ~tR~yl~~~~dL~~l~apft 198 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFT 198 (371)
T ss_pred chhhhhcCCccHHHHHHhhh
Confidence 98887765444777776553
No 83
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.18 Score=58.02 Aligned_cols=143 Identities=17% Similarity=0.136 Sum_probs=88.1
Q ss_pred HHHHHHccCCHHHHHHHHH-HHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 003008 150 LTVNLLRSESSAACEAAAG-LLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIAN 228 (858)
Q Consensus 150 ~Li~lL~~~~~~~~~~a~~-aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 228 (858)
-|.++|.+..+..+..|+. .+.-++.+.+... ..|.+|+...+. ++++++..---|..-+-.+.+-..+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVask--n~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASK--NIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhcc--CHHHHHHHHHHHHHHhhcCCCceee--
Confidence 4566777765555544544 4444466555222 468888888887 8999887766665555444333222
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-Chhh
Q 003008 229 TDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYY 307 (858)
Q Consensus 229 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~ 307 (858)
-|..+-+-|+.+++.+|..|+++|..+ |..++.-=.+-.+-+.. .+-++.+|..|+.|+-.|=. +++.
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~---~D~s~yVRk~AA~AIpKLYsLd~e~ 177 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAV---TDPSPYVRKTAAHAIPKLYSLDPEQ 177 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHh---cCCcHHHHHHHHHhhHHHhcCChhh
Confidence 355666778999999999999998765 33222211111222222 23367799999999988876 5666
Q ss_pred HHHHHH
Q 003008 308 RILIIE 313 (858)
Q Consensus 308 ~~~i~~ 313 (858)
+.++.+
T Consensus 178 k~qL~e 183 (968)
T KOG1060|consen 178 KDQLEE 183 (968)
T ss_pred HHHHHH
Confidence 555443
No 84
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.039 Score=63.46 Aligned_cols=301 Identities=15% Similarity=0.118 Sum_probs=176.0
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccc
Q 003008 467 YLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYD 546 (858)
Q Consensus 467 ~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i 546 (858)
.|.+=|++.+.-++-.|..+|++++..+-.|. ..|.+..+++.++ +.+++.|+.|...+-... +..
T Consensus 111 slknDL~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~--~~irKKA~Lca~r~irK~--P~l---- 176 (866)
T KOG1062|consen 111 SLKNDLNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRD--PYIRKKAALCAVRFIRKV--PDL---- 176 (866)
T ss_pred HHHhhccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCC--HHHHHHHHHHHHHHHHcC--chH----
Confidence 34445678888899999999999986433222 4677778888555 889999999998887621 111
Q ss_pred ccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhc---------------CCCHHHHHH
Q 003008 547 IPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMK---------------TSYPDLQRK 610 (858)
Q Consensus 547 ~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~---------------s~~~~v~~~ 610 (858)
...-++...++|.+.+..|...++ .+..++...........+ ..+.++..|+ -++|-+|..
T Consensus 177 -~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~ 253 (866)
T KOG1062|consen 177 -VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIR 253 (866)
T ss_pred -HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHH
Confidence 122366777888888888887777 444454332111122333 4555666654 146789999
Q ss_pred HHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhc
Q 003008 611 AASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQ 690 (858)
Q Consensus 611 a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~ 690 (858)
.++.|+-+-++++.....| ..++. ++..+++.+- + .+..++ -.++..+++...++
T Consensus 254 iLrlLriLGq~d~daSd~M--------~DiLa-qvatntdssk----N---------~GnAIL--YE~V~TI~~I~~~~- 308 (866)
T KOG1062|consen 254 ILRLLRILGQNDADASDLM--------NDILA-QVATNTDSSK----N---------AGNAIL--YECVRTIMDIRSNS- 308 (866)
T ss_pred HHHHHHHhcCCCccHHHHH--------HHHHH-HHHhcccccc----c---------chhHHH--HHHHHHHHhccCCc-
Confidence 9999999888765544332 12220 2222222200 0 000000 11222233322211
Q ss_pred ccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCC--------------CCCCCccchhhhhhhcchHHHHHHhc
Q 003008 691 TINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGP--------------DQDFENPINMEVTLYEAIPRLIEQIK 756 (858)
Q Consensus 691 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~--------------~~~~~~~~~~~i~~~~~i~~Lv~lL~ 756 (858)
+.+.-...++.+++...+- ........++ =..++..|+
T Consensus 309 ---------------------~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-------r~tIleCL~ 360 (866)
T KOG1062|consen 309 ---------------------GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-------RSTILECLK 360 (866)
T ss_pred ---------------------hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-------HHHHHHHhc
Confidence 1122334455555443331 0111111111 246788899
Q ss_pred cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC--ccch-------H---
Q 003008 757 SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD--SENH-------S--- 824 (858)
Q Consensus 757 ~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~-------~--- 824 (858)
+++..+|..|..-+-.|+..+ |.+.|+ ..|+..|...+++.+..++.-+.-++.. +..+ .
T Consensus 361 DpD~SIkrralELs~~lvn~~---Nv~~mv-----~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~ 432 (866)
T KOG1062|consen 361 DPDVSIKRRALELSYALVNES---NVRVMV-----KELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLK 432 (866)
T ss_pred CCcHHHHHHHHHHHHHHhccc---cHHHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 999999999999887766443 566666 6788889888999998888877777643 2221 1
Q ss_pred ---HHHHcCchHHHHHhhhcCChh
Q 003008 825 ---AIIAAGAVPALRRIVLSQRPQ 845 (858)
Q Consensus 825 ---~i~~~g~v~~L~~ll~~~~~~ 845 (858)
..+...++..++.++.+.-++
T Consensus 433 ~aG~~V~~dv~~nll~LIa~~~~e 456 (866)
T KOG1062|consen 433 TAGDFVNDDVVNNLLRLIANAFQE 456 (866)
T ss_pred hcccccchhhHHHHHHHHhcCCcc
Confidence 133445888888888777443
No 85
>PF05536 Neurochondrin: Neurochondrin
Probab=97.37 E-value=0.0025 Score=73.49 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=123.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCch----hHHHHHhcCcHHHHHHHhcCCC-----CCHHHHHHHHHHHHHhc
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINV----YRDLVAECGAIEEITGLLTRPS-----LTSEVKEQSMCTLWNLS 217 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~----~~~~i~~~g~i~~Lv~lL~~~~-----~~~~~~~~a~~~L~nLs 217 (858)
.+...+.+|+..+++.|-.++..+.++..+.+ .++.+.++=+.+-+-+||++++ .....+..++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45677889999998888888888889877554 3456777667788888999843 13466778999999999
Q ss_pred cCcchHHHHHhCCCHHHHHHHHccCCH-HHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHH
Q 003008 218 VDKKHRLKIANTDILPLLIKSLEDENM-KVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARN 296 (858)
Q Consensus 218 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~ 296 (858)
..++....---.+.||.|++.+.+.+. .+...|..+|..++..++++..+++.|+++.|.+.+.++ +...+.+..
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~----~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ----SFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC----cchHHHHHH
Confidence 977654322235679999999988866 899999999999999999999999999999999998773 236789999
Q ss_pred HHHHHhcC
Q 003008 297 ALIELAKD 304 (858)
Q Consensus 297 aL~nl~~~ 304 (858)
+|.+++..
T Consensus 162 lL~~Lls~ 169 (543)
T PF05536_consen 162 LLLNLLSR 169 (543)
T ss_pred HHHHHHHh
Confidence 99998864
No 86
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.35 E-value=0.39 Score=53.32 Aligned_cols=353 Identities=14% Similarity=0.075 Sum_probs=190.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH----ccCCH-HHHHHHHHHHHHhhcCchhHHH
Q 003008 108 VQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL----RSESS-AACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 108 v~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL----~~~~~-~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
..-|+ +++|..-..|...+..++..+-. .|..|.|...+ -.+.+ ..+..++.++++.+...+....
T Consensus 100 l~aL~-s~epr~~~~Aaql~aaIA~~Elp--------~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~l 170 (858)
T COG5215 100 LRALK-SPEPRFCTMAAQLLAAIARMELP--------NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDL 170 (858)
T ss_pred HHHhc-CCccHHHHHHHHHHHHHHHhhCc--------cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHH
Confidence 34565 67776666677777766643221 34444444444 34433 4677789999999887655555
Q ss_pred HHhcCcH-HHHHH-HhcCCCCCHHHHHHHHHHHHHhc-c------CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHH
Q 003008 183 VAECGAI-EEITG-LLTRPSLTSEVKEQSMCTLWNLS-V------DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGV 253 (858)
Q Consensus 183 i~~~g~i-~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs-~------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 253 (858)
+...++| -.++. .++.++ +..++..++.+|.+-+ . ++++|.- .+...++..+.++.+++..+..|
T Consensus 171 i~~sN~il~aiv~ga~k~et-~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgC 244 (858)
T COG5215 171 IQMSNVILFAIVMGALKNET-TSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGC 244 (858)
T ss_pred HHHhhHHHHHHHHhhcccCc-hHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHH
Confidence 5554433 33443 556654 7788889999999833 2 1222222 24455666778899999999999
Q ss_pred HHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008 254 LANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 254 L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
|..+-.- ...-....+.-........+++.++. +.-.+...-.-+|.. ++-..+...-.-..|+-+
T Consensus 245 l~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~---va~qavEfWsticeE-eid~~~e~~~~pe~p~qn--------- 311 (858)
T COG5215 245 LNKIMMLYYKFMQSYMENALAALTGRFMKSQNDE---VAIQAVEFWSTICEE-EIDGEMEDKYLPEVPAQN--------- 311 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchH---HHHHHHHHHHHHHHH-HhhhHHHHhhcccCchhh---------
Confidence 9777432 11111222222222333345544322 333444332233322 111111111000000000
Q ss_pred cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008 333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID 412 (858)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~ 412 (858)
+.++|.
T Consensus 312 --------------------------------------------------------~~fa~a------------------ 317 (858)
T COG5215 312 --------------------------------------------------------HGFARA------------------ 317 (858)
T ss_pred --------------------------------------------------------cchHHH------------------
Confidence 001111
Q ss_pred cccccccccccHHHHHHHhCC-------CCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008 413 RQLTLLPWIDGVARLVLILGL-------EDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH 485 (858)
Q Consensus 413 ~~~~~l~~~~~i~~Lv~lL~~-------~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~ 485 (858)
...+++|.|+.||.. ++..+-..|..+|.-.+... ...+.+. .....-+=+++++..-|+.+++
T Consensus 318 ------av~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~p-Vl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 318 ------AVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMRP-VLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred ------HHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHHH-HHHHHHHhccCchhhhHHHHHH
Confidence 112356667777654 23345566666665533210 0111111 3333444567888899999999
Q ss_pred HHHHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc---
Q 003008 486 ALERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE--- 560 (858)
Q Consensus 486 aL~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~--- 560 (858)
|++.+-. +...+..++. .++|.+..++.++. -.++..++||+..++.. . ...|-+.+-++..++...
T Consensus 389 AfGSvm~gp~~~~lT~~V~-qalp~i~n~m~D~~--l~vk~ttAwc~g~iad~---v--a~~i~p~~Hl~~~vsa~liGl 460 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIVP-QALPGIENEMSDSC--LWVKSTTAWCFGAIADH---V--AMIISPCGHLVLEVSASLIGL 460 (858)
T ss_pred HhhhhhcCccHHHHHhhHH-hhhHHHHHhcccce--eehhhHHHHHHHHHHHH---H--HHhcCccccccHHHHHHHhhh
Confidence 9999876 3444555543 57888888887555 78899999999998861 1 112334444554443322
Q ss_pred CCChhHHHHHH-HHHHhhcc
Q 003008 561 SLDPSIELTGN-VIEAAVSE 579 (858)
Q Consensus 561 s~d~~v~~~a~-~l~~L~~~ 579 (858)
.++|-+..+++ ...|++.+
T Consensus 461 ~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 461 MDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred hccchHHhhhHHHHHhHHHh
Confidence 24577777777 88888754
No 87
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.045 Score=62.96 Aligned_cols=284 Identities=12% Similarity=0.105 Sum_probs=166.8
Q ss_pred ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHH
Q 003008 156 RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLL 235 (858)
Q Consensus 156 ~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 235 (858)
++++.-+.-.|+.+|++++..+-.|+ ..|.+.+++++. ++.+++.|+.++..+-....... +..++..
T Consensus 117 ~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~--~~~irKKA~Lca~r~irK~P~l~----e~f~~~~ 184 (866)
T KOG1062|consen 117 NSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHR--DPYIRKKAALCAVRFIRKVPDLV----EHFVIAF 184 (866)
T ss_pred cCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCchHH----HHhhHHH
Confidence 44455666678888888876554443 457888899998 99999998888777653322211 2245666
Q ss_pred HHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCC------------CCCHHHHHHHHHHHHHHh
Q 003008 236 IKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANV------------EGSKVIRKEARNALIELA 302 (858)
Q Consensus 236 v~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~------------~~~~~~~~~a~~aL~nl~ 302 (858)
.++|.+.+..+....+..+..++... +.-..+.+ .++.||..|++-. -..|-+|-..++.|.-|.
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 77787777788888888888887653 32223333 6677777665311 013557777788887777
Q ss_pred cC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008 303 KD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA 381 (858)
Q Consensus 303 ~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~ 381 (858)
.+ ++..+.|.+- |-+.+ ...+.+ ++.---+.++|+.++.-+-.+.. +..
T Consensus 263 q~d~daSd~M~Di------Laqva-------------tntdss---kN~GnAILYE~V~TI~~I~~~~~---Lrv----- 312 (866)
T KOG1062|consen 263 QNDADASDLMNDI------LAQVA-------------TNTDSS---KNAGNAILYECVRTIMDIRSNSG---LRV----- 312 (866)
T ss_pred CCCccHHHHHHHH------HHHHH-------------hccccc---ccchhHHHHHHHHHHHhccCCch---HHH-----
Confidence 74 3333333221 22221 000000 11111344555555554421110 100
Q ss_pred hhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHH
Q 003008 382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKE 461 (858)
Q Consensus 382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~ 461 (858)
-++.-|-.+|.++|..++..|...|...-..++....
T Consensus 313 ----------------------------------------lainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq--- 349 (866)
T KOG1062|consen 313 ----------------------------------------LAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ--- 349 (866)
T ss_pred ----------------------------------------HHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH---
Confidence 1344455677777777787788887774332221110
Q ss_pred cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
.=-..++.+|++++..+|+.|...+..|......+.. +..|+..|... +++.+...+.-+..++.
T Consensus 350 -rHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~m------v~eLl~fL~~~--d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 350 -RHRSTILECLKDPDVSIKRRALELSYALVNESNVRVM------VKELLEFLESS--DEDFKADIASKIAELAE 414 (866)
T ss_pred -HHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHH------HHHHHHHHHhc--cHHHHHHHHHHHHHHHH
Confidence 0123467889999999999999998888864443332 45577777744 47778777777766665
No 88
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.34 Score=55.90 Aligned_cols=63 Identities=17% Similarity=0.165 Sum_probs=42.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhh
Q 003008 749 PRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817 (858)
Q Consensus 749 ~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~ 817 (858)
..+.+..-=.+.-+|.+|..||+++...... ......-.|.+.+.+.++++|..|..+|.++.
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~~------l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGAQDVV------LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC------ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 3333444446677899999999988743322 11112234567888999999999999998886
No 89
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.29 E-value=0.11 Score=59.15 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=124.3
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hh
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-VY 179 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~ 179 (858)
...-+-++.||+ ++.|-+|..|+..|..+...-.. .+ ..+.|.|..-|.++|+.++-.|+..++.|+.-+ .+
T Consensus 143 RDLa~Dv~tLL~-sskpYvRKkAIl~lykvFLkYPe----Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 143 RDLADDVFTLLN-SSKPYVRKKAILLLYKVFLKYPE----AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHhhhH----hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 344456888997 78889999999999887653322 23 478899999999999999999999999998844 33
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCC-HHHHHHHHHHHH--
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDEN-MKVKEAAGGVLA-- 255 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~-- 255 (858)
--. .-|.+.++|-+.+ |-.+.........+|+-- |.... ..+++|..++.+.. ..+...|..++.
T Consensus 216 yL~-----LAP~ffkllttSs-NNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 216 YLQ-----LAPLFYKLLVTSS-NNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred ccc-----ccHHHHHHHhccC-CCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 322 3588888887754 667777788888888743 33332 34789999998763 345555555554
Q ss_pred HHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-Chh
Q 003008 256 NLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDY 306 (858)
Q Consensus 256 nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~ 306 (858)
+++.+-....+-++ -+++.|-.++... .+.++..++.++..+.. |+.
T Consensus 285 s~s~g~~d~~asiq-LCvqKLr~fieds---DqNLKYlgLlam~KI~ktHp~ 332 (877)
T KOG1059|consen 285 SMSSGMSDHSASIQ-LCVQKLRIFIEDS---DQNLKYLGLLAMSKILKTHPK 332 (877)
T ss_pred hhccCCCCcHHHHH-HHHHHHhhhhhcC---CccHHHHHHHHHHHHhhhCHH
Confidence 33333222222222 2456666666543 34588888888888887 554
No 90
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.073 Score=57.15 Aligned_cols=267 Identities=15% Similarity=0.184 Sum_probs=180.6
Q ss_pred HHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc------ch----HHHHHhCCCHHHH
Q 003008 166 AAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK------KH----RLKIANTDILPLL 235 (858)
Q Consensus 166 a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~------~~----~~~i~~~g~i~~L 235 (858)
...-++-+|.-++-=..+++..+++.|++||.+. |..+....+..|..|...+ +. -..+++.+.++.|
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHe--NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHE--NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCC--CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 4445677787777777889999999999999998 9999999999999998421 11 3456688899999
Q ss_pred HHHHccCCHHHH------HHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-hh
Q 003008 236 IKSLEDENMKVK------EAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YY 307 (858)
Q Consensus 236 v~ll~~~~~~~~------~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~~ 307 (858)
++-+..-++.+. ..++..+-|+... ++....+++.|.+.+|+.-+..... ....+..|..+|.-+-.+. ++
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq~s~e~ 260 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQNSDEN 260 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhccCchh
Confidence 988876554444 4566677777654 5566677888999999985543322 2225678888888887753 46
Q ss_pred HHHHHHcCCccccccccc-ccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhh
Q 003008 308 RILIIEEGLVPVPMVGAD-AYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRS 386 (858)
Q Consensus 308 ~~~i~~~g~v~~~Lv~ll-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~ 386 (858)
+..+....|+.. |++-+ .|+.. ++
T Consensus 261 ~~~~~~l~GiD~-lL~~la~yk~~-------------------------------------dP----------------- 285 (536)
T KOG2734|consen 261 RKLLGPLDGIDV-LLRQLAVYKRH-------------------------------------DP----------------- 285 (536)
T ss_pred hhhhcCcccHHH-HHhhcchhhcc-------------------------------------CC-----------------
Confidence 666666666663 33311 00000 00
Q ss_pred hhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHH
Q 003008 387 RQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIK 466 (858)
Q Consensus 387 ~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~ 466 (858)
. +.+..+.-++-..+|+.+-..++++..+....+++
T Consensus 286 -------------------------~-------------------~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlq 321 (536)
T KOG2734|consen 286 -------------------------A-------------------TVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQ 321 (536)
T ss_pred -------------------------C-------------------CcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHH
Confidence 0 00122334455566666666788899999888888
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhcC---hhHHHHHHHcCChHHHHHhhcC-C-------CccHHHHHHHHHHHHHhcC
Q 003008 467 YLVKLLDHSSDAVRLATTHALERLSVS---RGVCQIMEAEGVVHPLVNTLKN-L-------DISESLMEKTLDILGRILD 535 (858)
Q Consensus 467 ~Lv~LL~~~~~~v~~~a~~aL~~Ls~~---~~~~~~l~~~g~i~~Li~lL~~-~-------~~~~~~~~~a~~~L~~l~~ 535 (858)
...-+++. ....|..+..+|-....+ .+++..+++.+|+..+..+... | ....+.-++.+..|+.+..
T Consensus 322 Lm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 322 LMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 66666655 566677888888887763 3678889999999988876541 1 1235566677888877766
No 91
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.20 E-value=0.00083 Score=47.88 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=36.7
Q ss_pred hhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 453 EHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 453 ~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
++++..+++.|+++.|+.++.++++++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4578889999999999999999999999999999999973
No 92
>PF05536 Neurochondrin: Neurochondrin
Probab=97.19 E-value=0.013 Score=67.80 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=120.1
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCccc---HHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKC---IDYIMQFSGCINLTVNLLRSE-------SSAACEAAAGLLR 171 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~---~~~ii~~~g~i~~Li~lL~~~-------~~~~~~~a~~aL~ 171 (858)
-.+.+.+.+|+ +.+..-|.-++..+.++...++.. ++.+. +.=+.+-+-++|+++ ....+..|+..|.
T Consensus 5 ~~l~~c~~lL~-~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~-~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 5 ASLEKCLSLLK-SADDTERFAGLLLVTKLLDADDEDSQTRRRVF-EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHHhc-cCCcHHHHHHHHHHHHcCCCchhhHHHHHHHH-HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45778899998 666466777777778887755521 12344 566678888888873 3566777999999
Q ss_pred HhhcCchh--HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHH
Q 003008 172 SISSINVY--RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEA 249 (858)
Q Consensus 172 nLs~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~ 249 (858)
.++..++. -..++. -||.|++++...+ +..+...|..+|..++.+++++..+.+.|+++.|++.+.+ .+...+.
T Consensus 83 ~f~~~~~~a~~~~~~~--~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~ 158 (543)
T PF05536_consen 83 AFCRDPELASSPQMVS--RIPLLLEILSSSS-DLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEI 158 (543)
T ss_pred HHcCChhhhcCHHHHH--HHHHHHHHHHcCC-chhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHH
Confidence 99987653 344554 4999999998873 3489999999999999999999999999999999999988 5577899
Q ss_pred HHHHHHHHcCCcC
Q 003008 250 AGGVLANLALSKS 262 (858)
Q Consensus 250 a~~~L~nL~~~~~ 262 (858)
++.+|.++.....
T Consensus 159 Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 159 ALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999876533
No 93
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.13 E-value=0.055 Score=55.62 Aligned_cols=255 Identities=16% Similarity=0.148 Sum_probs=158.8
Q ss_pred HHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH-hCCC
Q 003008 154 LLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA-NTDI 231 (858)
Q Consensus 154 lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~ 231 (858)
+++.-++..|..|+.+|.++....+.|..+-. ...-..++++++..-++.+++.+.+-+++-|+.++...+.+- ....
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444677889999999999999888887654 446678889988765578999999999999999987764444 3456
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHcCCc--CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC----
Q 003008 232 LPLLIKSLEDE-NMKVKEAAGGVLANLALSK--SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD---- 304 (858)
Q Consensus 232 i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~---- 304 (858)
+.-|+++++.. .+.+.+.++.++.|++.-. ..-..+.-.|-+.+-|+.|....-..+.++...-..=..|-.+
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 77888888876 5678899999999998721 1112233345455555654332211222222211111111110
Q ss_pred ---hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008 305 ---DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA 381 (858)
Q Consensus 305 ---~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~ 381 (858)
+.... =.+.|.+. . -+.+.+ .+ .|.- -+
T Consensus 317 ~~fD~Y~~-ELdsg~l~-----w------------Sp~H~~-------~d----------FWs~------------N~-- 347 (432)
T COG5231 317 CIFDNYLN-ELDSGRLE-----W------------SPYHHK-------KD----------FWST------------NL-- 347 (432)
T ss_pred hHHHHHHH-HHhhCccc-----C------------CCcccc-------cC----------chhh------------hH--
Confidence 00000 01111100 0 000000 00 0000 00
Q ss_pred hhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc--ccHHHHHHHhCCCCHH-HHHHHHHHHHH-hcCChhhHH
Q 003008 382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI--DGVARLVLILGLEDER-AIARAAESIAD-ISINEHMRM 457 (858)
Q Consensus 382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~--~~i~~Lv~lL~~~~~~-v~~~a~~aL~~-l~~~~~~~~ 457 (858)
+.+... ..++.|..++++..+. ....||.=++. .-..|+.+.
T Consensus 348 ----------------------------------d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 348 ----------------------------------DMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred ----------------------------------HHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 000101 1567788888877665 56677887887 557899999
Q ss_pred HHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 003008 458 LFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS 491 (858)
Q Consensus 458 ~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls 491 (858)
.+...|+-+.+++|++|++++|+..|..|+..+-
T Consensus 394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999987764
No 94
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.024 Score=60.74 Aligned_cols=222 Identities=16% Similarity=0.189 Sum_probs=155.9
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC------Chh----hHHHHHHcCcHHHHHHhhcCCcHHHHH----
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISI------NEH----MRMLFKEAGAIKYLVKLLDHSSDAVRL---- 481 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~------~~~----~~~~l~~~g~i~~Lv~LL~~~~~~v~~---- 481 (858)
..+..-++++.|+.||++++.+|-......|..+.. +.+ ...++++.+.++.|++-+..=+..+++
T Consensus 119 p~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~g 198 (536)
T KOG2734|consen 119 PILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADG 198 (536)
T ss_pred HHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhh
Confidence 344445699999999999999999999999998764 222 345677889999998877654444443
Q ss_pred --HHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHh
Q 003008 482 --ATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDA 558 (858)
Q Consensus 482 --~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~l 558 (858)
+....+-|+.. .++....+++.|.+..|+.-+.....-+.-+..+..+|+-+..++.+ ++....+-+|+..+++-
T Consensus 199 v~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e--~~~~~~~l~GiD~lL~~ 276 (536)
T KOG2734|consen 199 VHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDE--NRKLLGPLDGIDVLLRQ 276 (536)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCch--hhhhhcCcccHHHHHhh
Confidence 44556677776 67888888888888887774443322244566788888888875533 55567888999999877
Q ss_pred hc---CCCh------hHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 559 AE---SLDP------SIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 559 l~---s~d~------~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
+. ..|| +...|-. +||.+.....++ ..+....|++...-.++. ....+..++++|-....+++.....
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C 354 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC 354 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence 63 2332 3344555 899998888998 888888887665545554 4445666788888888777644333
Q ss_pred HhhchHHHHHHHH
Q 003008 629 ISADIESGLDAIF 641 (858)
Q Consensus 629 ~~~~~~~gl~~l~ 641 (858)
.+-.+..|+.++|
T Consensus 355 ~kfVe~lGLrtiF 367 (536)
T KOG2734|consen 355 NKFVEILGLRTIF 367 (536)
T ss_pred HHHHHHHhHHHHH
Confidence 3336778888888
No 95
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.08 E-value=0.0013 Score=46.90 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=36.6
Q ss_pred cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 220 KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 220 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
++++..+++.|+++.|++++.+++++++..++++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4478889999999999999999999999999999999974
No 96
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.4 Score=54.59 Aligned_cols=168 Identities=15% Similarity=0.110 Sum_probs=106.1
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
++..|-.+|.+.+..+|.-|...++.++.++.....+... .+.++..|+ ..+..+|+.|+-.|..++. .++.+.|
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Nak~I- 405 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQI- 405 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhHHHH-
Confidence 5667788889999999999999999987777766666655 788888888 6779999999999999985 3333333
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhcccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETT 581 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~ 581 (858)
+..+++.|.. .+..+|+....=.+-|+. .+....... +...++|+. ++.
T Consensus 406 ----V~elLqYL~t--Ad~sireeivlKvAILaE---KyAtDy~Wy----VdviLqLir---------------iag--- 454 (938)
T KOG1077|consen 406 ----VAELLQYLET--ADYSIREEIVLKVAILAE---KYATDYSWY----VDVILQLIR---------------IAG--- 454 (938)
T ss_pred ----HHHHHHHHhh--cchHHHHHHHHHHHHHHH---HhcCCcchh----HHHHHHHHH---------------Hhc---
Confidence 3456666653 336777765554444544 222110000 111222221 111
Q ss_pred chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHh
Q 003008 582 TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIIS 630 (858)
Q Consensus 582 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 630 (858)
...+.+.+..++++.- .++++|.+|+..+....+.....+.|++
T Consensus 455 ----d~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVK 498 (938)
T KOG1077|consen 455 ----DYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVK 498 (938)
T ss_pred ----ccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 1222344455555543 3567888888888877777777777743
No 97
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.00 E-value=0.0017 Score=49.88 Aligned_cols=55 Identities=24% Similarity=0.193 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 003008 436 ERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERL 490 (858)
Q Consensus 436 ~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~L 490 (858)
+.+|..|+++|++++........-.....++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999775444444446688999999999999999999999999875
No 98
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.086 Score=53.09 Aligned_cols=59 Identities=24% Similarity=0.204 Sum_probs=49.0
Q ss_pred cchHHHHHHhc--cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008 746 EAIPRLIEQIK--SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816 (858)
Q Consensus 746 ~~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL 816 (858)
-+||.|...|. ..++-||..|+.||..++... .++.|.+++.+..+-|++.|..+|-.+
T Consensus 218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~------------~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIADED------------CVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 36899998775 788999999999998876543 348889999999999999999998554
No 99
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.017 Score=67.86 Aligned_cols=204 Identities=11% Similarity=0.101 Sum_probs=156.9
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcC-C--cHHHHHHHHHHHHHhhc-Chh
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDH-S--SDAVRLATTHALERLSV-SRG 495 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~-~--~~~v~~~a~~aL~~Ls~-~~~ 495 (858)
-|..|..++||+++-.+++.--+-+.+. ++-++..+..+++.++-.+.+..|.. . +++-|..|+..|..+.. ..-
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~l 590 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKL 590 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccch
Confidence 4678889999999999998888777777 77778888889999998888888876 3 26889999999999998 455
Q ss_pred HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc-cccccccCcCcHHHHHhhcCCChhHHHHHH-HH
Q 003008 496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK-SKFYDIPVNGSEKGLDAAESLDPSIELTGN-VI 573 (858)
Q Consensus 496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l 573 (858)
.++...+.+.+...+..|.++. ..-++...+.||+.|=. ++. .++.-.+.++.+.|+.+|+++-|+|+..++ +|
T Consensus 591 GQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~---d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 591 GQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWE---DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFAL 666 (1387)
T ss_pred hHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhh---hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 5677778888888888888542 47789999999999977 443 455556678899999999999999999999 98
Q ss_pred HHhhcc----ccchhhhH------------hhccch---hHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 574 EAAVSE----TTTSYGKV------------LDSVFI---GRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 574 ~~L~~~----~~~~~~~i------------~~~g~i---~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
..+... .+.+...+ .+.-.+ -.++.+++++.+.++...+-+|.....+....-..
T Consensus 667 gtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~ 740 (1387)
T KOG1517|consen 667 GTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKV 740 (1387)
T ss_pred HHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHH
Confidence 887653 22221111 121112 36778889999999999888888887766554444
No 100
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.58 Score=53.56 Aligned_cols=179 Identities=13% Similarity=0.117 Sum_probs=113.6
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-ChhHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-SRGVCQI 499 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~~~~~~~ 499 (858)
..|.|++-|.++|+.|+..|...++.++ .+|.+- ...-|.+.++|. +.+--+-......+++|+. .|...+.
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny-----L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK 256 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY-----LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK 256 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc-----ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh
Confidence 6777888888888888888888888866 456543 334566677764 3445566666777777776 4544333
Q ss_pred HHHcCChHHHHHhhcCCCccHHHHHHHHHHHH--HhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008 500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILG--RILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA 576 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L 576 (858)
.+++|..++.+.. -..+...+..|+. +++....+......+ .+..|--++.++|+..+.-++ +++-+
T Consensus 257 -----Lieplt~li~sT~-AmSLlYECvNTVVa~s~s~g~~d~~asiqL----CvqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 257 -----LIEPITELMESTV-AMSLLYECVNTVVAVSMSSGMSDHSASIQL----CVQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred -----hhhHHHHHHHhhH-HHHHHHHHHHHheeehhccCCCCcHHHHHH----HHHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 5788888887332 2334444444432 333311111111111 245566678889999999998 88777
Q ss_pred hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
...+.. .+.. .-..+++.|.+.++.|+.+|+..|+.+...
T Consensus 327 ~ktHp~---~Vqa--~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 327 LKTHPK---AVQA--HKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred hhhCHH---HHHH--hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 643331 2222 225688999999999999999999988653
No 101
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.85 E-value=1.5 Score=52.26 Aligned_cols=572 Identities=14% Similarity=0.102 Sum_probs=280.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
.+..+.+-+. ..|...+.+..+-+.+++........ ..-.+|.+-+.+ .+..++...++.-++++......+..
T Consensus 83 ~ia~l~~e~~-~~di~~r~~~~~~l~~~a~~~~~~~t----r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~ 156 (759)
T KOG0211|consen 83 PIAVLIDELS-NTDIQLRLNSGRKLSNLALALGVERT----RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEY 156 (759)
T ss_pred cHHHHhhccC-chhhhhhhhhhccccchhhhcccchh----hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhH
Confidence 3455666665 55656677788888777764333211 134556666666 66777887777777776554221111
Q ss_pred HHhcCcH-HHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCH-HHHHHHHHHHHHHcC
Q 003008 183 VAECGAI-EEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENM-KVKEAAGGVLANLAL 259 (858)
Q Consensus 183 i~~~g~i-~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~-~~~~~a~~~L~nL~~ 259 (858)
.+.+ +++-.+.... ...+++.++..|...+. .++.... . .+-+++..+..++. ..+..+++....+..
T Consensus 157 ---~~~ll~~le~l~~~e--et~vr~k~ve~l~~v~~~~~~~~~~---~-~lv~l~~~l~~~d~~~sr~sacglf~~~~~ 227 (759)
T KOG0211|consen 157 ---AHMLLPPLELLATVE--ETGVREKAVESLLKVAVGLPKEKLR---E-HLVPLLKRLATGDWFQSRLSACGLFGKLYV 227 (759)
T ss_pred ---HHHhhHHHHhhhHHH--HHHHHHHHHHHHHHHHHhcChHHHH---H-HHHHHHHHccchhhhhcchhhhhhhHHhcc
Confidence 1122 2332233222 34567778877777653 3322110 1 12233333333311 123344444444433
Q ss_pred CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS 339 (858)
Q Consensus 260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~ 339 (858)
.-.. ..++.. +.+++.-+- .+..+.++..++.-+.+++.--.. ..+..+.++. ++++.
T Consensus 228 ~~~~--~~vk~e-lr~~~~~lc--~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~-~~~L~-------------- 285 (759)
T KOG0211|consen 228 SLPD--DAVKRE-LRPIVQSLC--QDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPT-LIQLL-------------- 285 (759)
T ss_pred CCCh--HHHHHH-HHHHHHhhc--cccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHH-Hhhhh--------------
Confidence 2221 111111 223333332 223556777777777777653221 5555566663 55542
Q ss_pred CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008 340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP 419 (858)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 419 (858)
+..... +.+++++.++. +..... .+.+ .
T Consensus 286 --------~Ddqds--------------------Vr~~a~~~~~~------l~~l~~-------------~~~d-----~ 313 (759)
T KOG0211|consen 286 --------RDDQDS--------------------VREAAVESLVS------LLDLLD-------------DDDD-----V 313 (759)
T ss_pred --------hcchhh--------------------HHHHHHHHHHH------HHHhcC-------------Cchh-----h
Confidence 000001 22222222222 111100 0000 0
Q ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHH
Q 003008 420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVC 497 (858)
Q Consensus 420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~ 497 (858)
.....+.++...++++..++.......+.++..=.. ....-..+++...++++...+++.+.+.-...++. +.+.+
T Consensus 314 ~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 314 VKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 122667788888888888887777666664421000 11123457788888888888888888777777665 44455
Q ss_pred HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008 498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA 576 (858)
Q Consensus 498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L 576 (858)
..+.....+|.+..++.++. ..++...+.-+..+.... . +. -.-..-.+.++..+++.+++|+.+.. .+..+
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~--~~vr~a~a~~~~~~~p~~---~-k~-~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNA--LHVRSALASVITGLSPIL---P-KE-RTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred cccchhhhhHHHHHHHhccc--chHHHHHhccccccCccC---C-cC-cCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 55666666788888887554 666665555444443311 1 10 01123467788889999999999887 55444
Q ss_pred hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCC
Q 003008 577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGR 656 (858)
Q Consensus 577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~ 656 (858)
-......--.......+|.+..+-......++....+.+-.++..-. ..+.. . -+..+.. ..+.+..+
T Consensus 465 ~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~---~-~~~~l~~-~~l~d~v~----- 532 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFD---E-KLAELLR-TWLPDHVY----- 532 (759)
T ss_pred HhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhh---H-HHHHHHH-hhhhhhHH-----
Confidence 32211110222333456666666666656666666666666654332 11100 0 0111110 00011000
Q ss_pred CCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCC--CchhhHHHHHHHhhcccCCCCCCC
Q 003008 657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVP--LHYKDWVAACLVKLSCLSGPDQDF 734 (858)
Q Consensus 657 ~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~ 734 (858)
.. .-+....+..+...-. . .... .....+++..... .-.+.....++..+.
T Consensus 533 ------------~I-r~~aa~~l~~l~~~~G-~---~w~~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la--------- 585 (759)
T KOG0211|consen 533 ------------SI-REAAARNLPALVETFG-S---EWAR-LEEIPKLLAMDLQDNYLVRMTTLFSIHELA--------- 585 (759)
T ss_pred ------------HH-HHHHHHHhHHHHHHhC-c---chhH-HHhhHHHHHHhcCcccchhhHHHHHHHHHH---------
Confidence 00 0011111111111000 0 0000 0001111111000 111222233333222
Q ss_pred CccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHH
Q 003008 735 ENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILY 814 (858)
Q Consensus 735 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 814 (858)
+..+..++....+|++.++..+..++||..++.-|..+...=. ....+.-..|.+..+.++++.++|..|..++.
T Consensus 586 -~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~----~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~ 660 (759)
T KOG0211|consen 586 -EVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD----ESVRDEEVLPLLETLSSDQELDVRYRAILAFG 660 (759)
T ss_pred -HHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc----hHHHHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 3344445566678899999999999999999999987653211 14444445566667778888889988877765
Q ss_pred hh
Q 003008 815 NL 816 (858)
Q Consensus 815 nL 816 (858)
-+
T Consensus 661 ~i 662 (759)
T KOG0211|consen 661 SI 662 (759)
T ss_pred HH
Confidence 54
No 102
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.091 Score=60.52 Aligned_cols=400 Identities=18% Similarity=0.124 Sum_probs=213.3
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh-HHHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY-RDLV 183 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~-~~~i 183 (858)
..+.+.++ +.++.+|..++....++-..+.. ...+.|.++.|-.++.++++.+..+|+.+|..|...+.+ -...
T Consensus 124 ~Pl~~~l~-d~~~yvRktaa~~vakl~~~~~~----~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 124 DPLLKCLK-DDDPYVRKTAAVCVAKLFDIDPD----LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHhcc-CCChhHHHHHHHHHHHhhcCChh----hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 34556676 78889999888777777654432 344799999999999999999999999999999765432 1111
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~ 263 (858)
...-.+..++..+... +...+...+.+|.+-.-.+. +... ..+..+...|.+.+..+.-.+...+.++...-..
T Consensus 199 l~~~~~~~lL~al~ec--~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~ 272 (734)
T KOG1061|consen 199 LNPQLINKLLEALNEC--TEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ 272 (734)
T ss_pred ccHHHHHHHHHHHHHh--hhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH
Confidence 1111234444444443 44444444444444332222 1111 2244556667777777777777777777654333
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG 343 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~ 343 (858)
.........-++|+.++...+ ..+.. +|.|+..--..+..+.....-. ++++ |.++.
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~----e~qyv---aLrNi~lil~~~p~~~~~~~~~-Ff~k---ynDPi------------ 329 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES----EIQYV---ALRNINLILQKRPEILKVEIKV-FFCK---YNDPI------------ 329 (734)
T ss_pred HHHHHHHHhcccceeeecccc----hhhHH---HHhhHHHHHHhChHHHHhHhHe-eeee---cCCch------------
Confidence 333334466788888886653 13323 3444432111111122222222 2333 11110
Q ss_pred chhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccccc
Q 003008 344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDG 423 (858)
Q Consensus 344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 423 (858)
.++..-...+..++.+.. + +| .
T Consensus 330 ---------YvK~eKleil~~la~~~n--------l--------~q---------------------------------v 351 (734)
T KOG1061|consen 330 ---------YVKLEKLEILIELANDAN--------L--------AQ---------------------------------V 351 (734)
T ss_pred ---------hhHHHHHHHHHHHhhHhH--------H--------HH---------------------------------H
Confidence 111111222222221110 0 00 2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHH
Q 003008 424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEA 502 (858)
Q Consensus 424 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~ 502 (858)
+..|...-..-|.+...++.+++++++..-+.. .+.|..|+.++...-.-+.+.+...+..+.. .|..-+.++
T Consensus 352 l~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv- 425 (734)
T KOG1061|consen 352 LAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVV- 425 (734)
T ss_pred HHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhh-
Confidence 223333444457778889999999976432222 6789999999998777777778888888776 444323322
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh-ccc
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV-SET 580 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~-~~~ 580 (858)
+.+-.-+. +-.+++.|..-.|+|+.-+. ....-. .-+..+++-..+...+|+..-+ +.-.+. ...
T Consensus 426 ----~~l~~~~~-sl~epeak~amiWilg~y~~---~i~~a~-----elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p 492 (734)
T KOG1061|consen 426 ----AILCENLD-SLQEPEAKAALIWILGEYAE---RIENAL-----ELLESFLENFKDETAEVQLELLTAAIKLFLKKP 492 (734)
T ss_pred ----hhhccccc-ccCChHHHHHHHHHHhhhhh---ccCcHH-----HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCC
Confidence 22222222 22346677777777777665 211110 1234445555556667776655 333322 111
Q ss_pred cchhhhHhhccchhHHHHhh--cCCCHHHHHHHHHHHHHhhcC
Q 003008 581 TTSYGKVLDSVFIGRMIGIM--KTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~~l~~~ 621 (858)
... +.+ +..++... .+.+++++..+..-=+.++.+
T Consensus 493 ~~t-q~~-----l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~ 529 (734)
T KOG1061|consen 493 TET-QEL-----LQGVLPLATADTDNPDLRDRGLIYWRLLSED 529 (734)
T ss_pred ccH-HHH-----HHHHHhhhhccccChhhhhhHHHHHHHhhcC
Confidence 121 222 22233332 356777877777666666533
No 103
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.78 E-value=0.0054 Score=53.03 Aligned_cols=66 Identities=21% Similarity=0.213 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHh
Q 003008 163 CEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIAN 228 (858)
Q Consensus 163 ~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~ 228 (858)
+...++.|.||+... .+++.+.+.|+||.++....-.+.+|-+++.|..++.||+. +++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 456788999998865 79999999999999999877666699999999999999994 5678877763
No 104
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.63 E-value=0.12 Score=58.53 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=102.1
Q ss_pred HHHHHHHhhcCchhHHHHHhcCcHHHHHHHh---------cCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHH
Q 003008 166 AAGLLRSISSINVYRDLVAECGAIEEITGLL---------TRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLL 235 (858)
Q Consensus 166 a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL---------~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~L 235 (858)
|+.+|+-++.++.+.+.+....++..|.++- ... .++.+...|+++|+|+-.+ +..|...++.|+.+.+
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~-~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFES-PDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccC-CChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 3567788888877777777777778887765 222 3788999999999998755 5578888899999999
Q ss_pred HHHHccC-----CHHHHHHHHHHHHHHcCC-cCchHHHHhC-CCHHHHHHHHccCC----C----------CCHHHHHHH
Q 003008 236 IKSLEDE-----NMKVKEAAGGVLANLALS-KSNHNILVEA-GVIPKLAMLLKANV----E----------GSKVIRKEA 294 (858)
Q Consensus 236 v~ll~~~-----~~~~~~~a~~~L~nL~~~-~~~~~~i~~~-g~i~~Lv~ll~~~~----~----------~~~~~~~~a 294 (858)
++.|+.. +.++.....+.|.-++.. ...+..+++. +++..++..+...- . ........+
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei 159 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI 159 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence 9999887 778999999999999875 5667666654 67777777553211 0 012234567
Q ss_pred HHHHHHHhcC
Q 003008 295 RNALIELAKD 304 (858)
Q Consensus 295 ~~aL~nl~~~ 304 (858)
++.+.|+..+
T Consensus 160 LKllFNit~~ 169 (446)
T PF10165_consen 160 LKLLFNITLH 169 (446)
T ss_pred HHHHHHhhhc
Confidence 8888998774
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.34 Score=55.17 Aligned_cols=103 Identities=14% Similarity=0.150 Sum_probs=71.2
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008 465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF 544 (858)
Q Consensus 465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 544 (858)
+..+.+=|.+.++....-|..+++|+.+ .+.++.+. +-+-.+|.+++..+.++..++.||..|...+++..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~--- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV--- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc---
Confidence 3444455666778888888899999875 33344433 23346777778778899999999999988544332
Q ss_pred ccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008 545 YDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS 578 (858)
Q Consensus 545 ~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~ 578 (858)
-..++...++.+|.+.+-.+...+. .+..++.
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk 216 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVK 216 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHH
Confidence 2245677899999988877777666 5555553
No 106
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.57 E-value=0.0042 Score=47.64 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 003008 117 PLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSI 173 (858)
Q Consensus 117 ~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nL 173 (858)
|.+|..|+++|++++.......... ...+++.|+.+|+++++.+|..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~--~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY--LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH--HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5689999999999887766543333 378999999999999999999999999875
No 107
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.47 E-value=2.1 Score=47.89 Aligned_cols=378 Identities=12% Similarity=0.033 Sum_probs=201.0
Q ss_pred CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhc-Cch-hHHHHHh--cC
Q 003008 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISS-INV-YRDLVAE--CG 187 (858)
Q Consensus 114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~-~~~-~~~~i~~--~g 187 (858)
++|+.+|..+=.-|.+++.++-. .++ ..+++.|-+. +++.|..|.-+|.|=-. +++ -+....+ .|
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~---qf~------~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~ 86 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFE---QFI------SLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLG 86 (858)
T ss_pred CCCCCccccHHHHHHHhccccHH---HHH------HHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc
Confidence 57777888888888888875432 222 3556666443 66778877777777532 222 2222111 12
Q ss_pred c-------HH-HHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHc
Q 003008 188 A-------IE-EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLA 258 (858)
Q Consensus 188 ~-------i~-~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~ 258 (858)
. |. ..+..|.++ .|..-..|+.++..++..+-.... =.|.+..++.....+ ....+..++.++.+.+
T Consensus 87 ~~~E~k~qvK~~al~aL~s~--epr~~~~Aaql~aaIA~~Elp~~~--wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 87 MRHESKEQVKGMALRALKSP--EPRFCTMAAQLLAAIARMELPNSL--WPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred CCHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHhhCcccc--chHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 1 22 224466666 777777777777776643210000 023344455555444 3467889999999998
Q ss_pred CCcCchHHHHhCCC-HHHHHH-HHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008 259 LSKSNHNILVEAGV-IPKLAM-LLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS 336 (858)
Q Consensus 259 ~~~~~~~~i~~~g~-i~~Lv~-ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~ 336 (858)
........+....+ +-.++. -++.++ +..+|..++.+|.+-+.. .+..+..++-.. .
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et--~~avRLaaL~aL~dsl~f--v~~nf~~E~erN-y---------------- 221 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNET--TSAVRLAALKALMDSLMF--VQGNFCYEEERN-Y---------------- 221 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCc--hHHHHHHHHHHHHHHHHH--HHHhhcchhhhc-h----------------
Confidence 77655443333333 233333 333332 444666666666552210 000000000000 0
Q ss_pred CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008 337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT 416 (858)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~ 416 (858)
T Consensus 222 -------------------------------------------------------------------------------- 221 (858)
T COG5215 222 -------------------------------------------------------------------------------- 221 (858)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-h
Q 003008 417 LLPWIDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-R 494 (858)
Q Consensus 417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~ 494 (858)
.+....+.-+.+|.+++..|.++|.. +.-+-+.-+...+.-.-..+.+.+++.+++|..+++.--..++.. -
T Consensus 222 ------~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEei 295 (858)
T COG5215 222 ------FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEI 295 (858)
T ss_pred ------hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh
Confidence 11111222356677888888888888 333444444455555556667788888888888877654444431 1
Q ss_pred hHHHHH-------------H---HcCChHHHHHhhcCCCc----cH-HHHHHHHHHHHHhcCCCcccccccccccCcCcH
Q 003008 495 GVCQIM-------------E---AEGVVHPLVNTLKNLDI----SE-SLMEKTLDILGRILDPSKEMKSKFYDIPVNGSE 553 (858)
Q Consensus 495 ~~~~~l-------------~---~~g~i~~Li~lL~~~~~----~~-~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~ 553 (858)
+..-.+ . -.+++|.|+.+|....+ |+ .+...|..||--++....+ ..+.
T Consensus 296 d~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----------~i~~ 365 (858)
T COG5215 296 DGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----------KIMR 365 (858)
T ss_pred hhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----------HhHH
Confidence 110000 0 12378999999975222 12 2445677777666651111 1233
Q ss_pred HHHHh----hcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 554 KGLDA----AESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 554 ~Li~l----l~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
+.+.. +.+++-.-+..+. ++..........+..-+-...+|.+.....++.--+...++|+++.++..
T Consensus 366 pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 366 PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 33333 3444433344455 66655544332212223345677787777766667888899999999753
No 108
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.32 E-value=0.057 Score=60.05 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=119.4
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-Chhh---HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISI-NEHM---RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV 496 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~---~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~ 496 (858)
.+.+|.|..+|++.+.+++.+....++.++. .++. |+-+. .--.|+.+|.+.+.++|++|...++-++.-
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a--- 760 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA--- 760 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh---
Confidence 4578899999999999999999999999764 3332 22121 233578889999999999999999998851
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
+--+.++..|++-|+..+ -+.+...+.+++-.+. .-.+...+|.+++--..++..|+...+ +++.
T Consensus 761 ---iGPqdvL~~LlnnLkvqe--Rq~RvctsvaI~iVae---------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 761 ---IGPQDVLDILLNNLKVQE--RQQRVCTSVAISIVAE---------YCGPFSVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred ---cCHHHHHHHHHhcchHHH--HHhhhhhhhhhhhhHh---------hcCchhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 111223444444444111 2233333344444443 112344577777777777788887777 8888
Q ss_pred hhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 576 AVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 576 L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+.+.-... ..=.-.-..|.|-..|.+.++.-+..|..++..++.+..
T Consensus 827 mFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 827 MFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 87543222 111113456778888899999999999999999987743
No 109
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.32 E-value=0.066 Score=63.16 Aligned_cols=202 Identities=16% Similarity=0.058 Sum_probs=146.4
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhhc
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE---SSAACEAAAGLLRSISS 175 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~---~~~~~~~a~~aL~nLs~ 175 (858)
..-|..|-+++||+ |+-.+.|---+.+=.++-.-+.+|...++ +.++-.-+++.|.++ +++.|.-|+..|..+..
T Consensus 509 LsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILAvD~SCQ~dLv-Ke~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~ 586 (1387)
T KOG1517|consen 509 LSVGIFPYVLKLLQ-SSARELRPILVFIWAKILAVDPSCQADLV-KENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR 586 (1387)
T ss_pred hccchHHHHHHHhc-cchHhhhhhHHHHHHHHHhcCchhHHHHH-hccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc
Confidence 35688999999998 77656665544444454444466655666 465555566666652 56888889999999987
Q ss_pred Cc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHH
Q 003008 176 IN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGV 253 (858)
Q Consensus 176 ~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~ 253 (858)
+- -.++...+.+.|..-++.|++++ .+-.+.-++-+|+.|= ..++.|..-++.++.+.|+.+|+++.++||..|..+
T Consensus 587 nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFA 665 (1387)
T KOG1517|consen 587 NFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFA 665 (1387)
T ss_pred ccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHH
Confidence 64 58888899999998899999853 6778888888888884 566778888899999999999999999999999999
Q ss_pred HHHHcCCc----CchHH------------H-HhCCCHH---HHHHHHccCCCCCHHHHHHHHHHHHHHhcChh
Q 003008 254 LANLALSK----SNHNI------------L-VEAGVIP---KLAMLLKANVEGSKVIRKEARNALIELAKDDY 306 (858)
Q Consensus 254 L~nL~~~~----~~~~~------------i-~~~g~i~---~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~ 306 (858)
|..+-.+. +.+.. + +|.-... .++.+++.+ ++.++...+-+|.++.....
T Consensus 666 Lgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg---splvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 666 LGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG---SPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred HHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc---chHHHHHHHHHHHHHHHhhH
Confidence 99987642 11111 1 2222222 455555544 67788888889998887433
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.28 E-value=0.028 Score=57.73 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=109.3
Q ss_pred CCCCHHHHHHHHHHHHHhc-CC--hhhHHHHHH--cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcC
Q 003008 432 GLEDERAIARAAESIADIS-IN--EHMRMLFKE--AGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEG 504 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~l~-~~--~~~~~~l~~--~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g 504 (858)
.+.+++.+..+..-|..+. .+ ......+.+ ...+..+...+.+....+...|+.++..|+.. ...... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHH
Confidence 6678899999999998843 33 233333332 25567777888777788999999999999872 222222 223
Q ss_pred ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC-cHHHHHhhcCCChhHHHHHH-HHHHhhcccc-
Q 003008 505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG-SEKGLDAAESLDPSIELTGN-VIEAAVSETT- 581 (858)
Q Consensus 505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~-i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~- 581 (858)
.+|.|+..+.++. ..+++.+..+|..+.... .. .... .+.+...+.+.++.++..++ .+..++....
T Consensus 95 ~l~~Ll~~~~~~~--~~i~~~a~~~L~~i~~~~---~~-----~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 95 LLPPLLKKLGDSK--KFIREAANNALDAIIESC---SY-----SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS----H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHcccc--HHHHHHHHHHHHHHHHHC---Cc-----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 6788888888544 789999999999998721 10 1112 45566677888999999988 7777664433
Q ss_pred chhhhHhh----ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 582 TSYGKVLD----SVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 582 ~~~~~i~~----~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
.. ..+.. ...++.+...+.+.+++++..|-.++..+...-+.
T Consensus 165 ~~-~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 DS-SVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hH-hhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 11 22222 23567888889999999999999999888654333
No 111
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.27 E-value=0.018 Score=49.91 Aligned_cols=69 Identities=22% Similarity=0.210 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcC
Q 003008 246 VKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEG 315 (858)
Q Consensus 246 ~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g 315 (858)
.+....++|+||++. +.++..+++.|++|.+++...- ++..|.+++.|..++.||+. +++|+..|.+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 456788999999975 6888899999999999998765 44578899999999999999 789998887654
No 112
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.26 E-value=0.33 Score=50.18 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=76.9
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcC-cHHHHHHhhcCC--cHHHHHHHHHHHHHhhcChhHHHHHHHc-CC
Q 003008 430 ILGLEDERAIARAAESIADISINEHMRMLFKEAG-AIKYLVKLLDHS--SDAVRLATTHALERLSVSRGVCQIMEAE-GV 505 (858)
Q Consensus 430 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g-~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~l~~~-g~ 505 (858)
+++.-++-.+..|..++.++...++.|..++.++ .-..++.+++.. ..++|.+...++|-++.++.+.+.+-+. ..
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334455578889999999999999999988655 445677777653 4789999999999999988887655543 45
Q ss_pred hHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 506 VHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 506 i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
+..|+++.+ ....+.+-+.++.++.|++.
T Consensus 237 i~dli~iVk-~~~keKV~Rlc~~Iv~n~~d 265 (432)
T COG5231 237 INDLIAIVK-ERAKEKVLRLCCGIVANVLD 265 (432)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 667777777 33345556667777777776
No 113
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.23 E-value=0.05 Score=55.81 Aligned_cols=181 Identities=18% Similarity=0.171 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHHcccCC--cccHHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcH
Q 003008 114 DYDPLDREQAVEALWKYSLGG--KKCIDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAI 189 (858)
Q Consensus 114 s~d~~~~~~a~~~L~~la~~~--~~~~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~~~i~~~g~i 189 (858)
+.|++.|..++..|..+..+. ......++.. ...+..++..+.+....+...|+.++..|+..-. .-.... ...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~l 96 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DILL 96 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHHH
Confidence 679999999999999888766 1111222210 1344566666666666777788999988876432 122222 2368
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC-chHHHH
Q 003008 190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS-NHNILV 268 (858)
Q Consensus 190 ~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~ 268 (858)
|.|++.+.+. +..++..|..+|..+..+-.....+ .++.+...+.+.++.++..++..|..+...-. ....+-
T Consensus 97 ~~Ll~~~~~~--~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 97 PPLLKKLGDS--KKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHccc--cHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 9999999987 8899999999999988655411111 14566667788899999999999999865433 222221
Q ss_pred h----CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 269 E----AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 269 ~----~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
. ...++.+...+... .+.+|+.|..+++.+...
T Consensus 171 ~~~~~~~l~~~l~~~l~D~---~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA---DPEVREAARECLWALYSH 207 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHH
Confidence 1 23566677777654 566999999999999774
No 114
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.23 Score=57.31 Aligned_cols=190 Identities=17% Similarity=0.118 Sum_probs=117.2
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIM 500 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l 500 (858)
....++...+++.++.++..++-.+.++-. ...+.+.+.|.++.|-.++.+.++.|..+|+.+|..+.. +++.-...
T Consensus 121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 367789999999999999999888888543 223456679999999999999999999999999999987 33211111
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE 579 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~ 579 (858)
...-.+..++..+. +..+.-+.....++.+-.. +...--...+..+...+.+.++.+...+. .+.++...
T Consensus 199 l~~~~~~~lL~al~--ec~EW~qi~IL~~l~~y~p-------~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 199 LNPQLINKLLEALN--ECTEWGQIFILDCLAEYVP-------KDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred ccHHHHHHHHHHHH--HhhhhhHHHHHHHHHhcCC-------CCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 11111222233332 1112222222222222221 10000012344555667777788888888 77776654
Q ss_pred ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 580 TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 580 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
.... ....-....++|+.++++.. ++|..+++=+..+....+.
T Consensus 270 ~~~~-~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~ 312 (734)
T KOG1061|consen 270 LKQV-NELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE 312 (734)
T ss_pred HHHH-HHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH
Confidence 4433 33333455688898888887 8888888777766654443
No 115
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.16 E-value=0.014 Score=50.43 Aligned_cols=92 Identities=17% Similarity=0.137 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcC
Q 003008 763 REAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQ 842 (858)
Q Consensus 763 ~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~ 842 (858)
|..+..+|+..+..-.. . ..-.-...++|++..+.|++.+||..|..+|+|+++.-...-.-.=..++..|.++..++
T Consensus 3 R~ggli~Laa~ai~l~~-~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGK-D-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchH-h-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555566555433222 1 122223456999999999999999999999999986533221112357889999999999
Q ss_pred ChhHHHHHHHHhcC
Q 003008 843 RPQWTRALRLLRNL 856 (858)
Q Consensus 843 ~~~~~~al~~l~~l 856 (858)
++.++.+...|.++
T Consensus 81 d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAAELLDRL 94 (97)
T ss_pred chhHHHHHHHHHHH
Confidence 99998887877654
No 116
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.25 Score=55.81 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=72.9
Q ss_pred hhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc
Q 003008 742 VTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE 821 (858)
Q Consensus 742 i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~ 821 (858)
+..+|+.-.+|.-|+++-.+||++|...++.|+..++. -. ..++.-|+..++|..+.||..|..+|..++.+-.
T Consensus 369 iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~-FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 369 IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG-FA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA 442 (823)
T ss_pred cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC-cH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence 44678888899999999999999999999999887665 22 2234678889999999999999999988877644
Q ss_pred chHHHHHcCchHHHHHhhhcCChhHHHHHH
Q 003008 822 NHSAIIAAGAVPALRRIVLSQRPQWTRALR 851 (858)
Q Consensus 822 ~~~~i~~~g~v~~L~~ll~~~~~~~~~al~ 851 (858)
.+.. -++.+++-+.+.++.+.+++.
T Consensus 443 i~ee-----ql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 443 IREE-----QLRQILESLEDRSVDVREALR 467 (823)
T ss_pred ecHH-----HHHHHHHHHHhcCHHHHHHHH
Confidence 4332 245666666666666644433
No 117
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.15 E-value=0.47 Score=56.34 Aligned_cols=414 Identities=15% Similarity=0.068 Sum_probs=208.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 003008 109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGA 188 (858)
Q Consensus 109 ~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~ 188 (858)
++.+ +..+.+|..+..-+++++..-.. .+. ..+.++.++.+..++.+.+|+.|...+.++...-+...... .-.
T Consensus 244 ~lc~-d~~~~Vr~~~a~~l~~~a~~~~~---~~~-~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~-~~~ 317 (759)
T KOG0211|consen 244 SLCQ-DDTPMVRRAVASNLGNIAKVLES---EIV-KSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVV-KSL 317 (759)
T ss_pred hhcc-ccchhhHHHHHhhhHHHHHHHHH---HHH-HhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhh-hhh
Confidence 3443 55666777777777777654433 233 57888888888888888888888777777754211110111 124
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHH
Q 003008 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNI 266 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~ 266 (858)
.+.+++....+ +..++.........|+..=+. ....---+++...+++....+.+...+.-...++.. .++...
T Consensus 318 ~~~l~~~~~d~--~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~ 393 (759)
T KOG0211|consen 318 TESLVQAVEDG--SWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPN 393 (759)
T ss_pred hHHHHHHhcCh--hHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccc
Confidence 56777777766 666666666665555421111 111122345555556555555555555555554432 233444
Q ss_pred HHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcch
Q 003008 267 LVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE 345 (858)
Q Consensus 267 i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~ 345 (858)
+...-.+|.+-.+....+ +.++...+....++.- .+ ....+. ++..+
T Consensus 394 i~~~~ilp~~~~lv~d~~---~~vr~a~a~~~~~~~p~~~-------k~~ti~-~llp~--------------------- 441 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNA---LHVRSALASVITGLSPILP-------KERTIS-ELLPL--------------------- 441 (759)
T ss_pred cchhhhhHHHHHHHhccc---chHHHHHhccccccCccCC-------cCcCcc-ccChh---------------------
Confidence 444444555555443321 1122222221111110 00 000111 01100
Q ss_pred hhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008 346 IERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA 425 (858)
Q Consensus 346 ~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~ 425 (858)
.+.++. +. ...+....+.. +... + ...+..--....+..++
T Consensus 442 ---------------~~~~l~-de-~~~V~lnli~~---------ls~~------~-------~v~~v~g~~~~s~slLp 482 (759)
T KOG0211|consen 442 ---------------LIGNLK-DE-DPIVRLNLIDK---------LSLL------E-------EVNDVIGISTVSNSLLP 482 (759)
T ss_pred ---------------hhhhcc-hh-hHHHHHhhHHH---------HHHH------H-------hccCcccchhhhhhhhh
Confidence 000110 00 00000000000 0000 0 00000001112233566
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHc
Q 003008 426 RLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAE 503 (858)
Q Consensus 426 ~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~ 503 (858)
.++.+-....+.++.+..+.+..++.... ..+++...-+.+...+.+....+|+.|+..+..++. ..++. ..
T Consensus 483 ~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~----~~ 556 (759)
T KOG0211|consen 483 AIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA----RL 556 (759)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh----HH
Confidence 67777666677888888888877554222 334444455556666767778999999988888875 21111 11
Q ss_pred CChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccc
Q 003008 504 GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTT 582 (858)
Q Consensus 504 g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~ 582 (858)
..++.++....+++ -..|....-++..++.- ....+....-++.+..+..++.++|+.+++ .+.....--.
T Consensus 557 ~~i~k~L~~~~q~~--y~~R~t~l~si~~la~v-----~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~- 628 (759)
T KOG0211|consen 557 EEIPKLLAMDLQDN--YLVRMTTLFSIHELAEV-----LGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD- 628 (759)
T ss_pred HhhHHHHHHhcCcc--cchhhHHHHHHHHHHHH-----hccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc-
Confidence 23565655555332 33444444444333320 001233345588899999999999999998 6655443222
Q ss_pred hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 583 SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 583 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
....+....|.+..+.++.+.+++..|..++..+.
T Consensus 629 --~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 629 --ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred --hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 23445556677777778888888888777776653
No 118
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.045 Score=61.52 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=106.0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-C--h----h
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-S--R----G 495 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~--~----~ 495 (858)
.+..|..+.++.|..++..|+.+|..++..-... .-.....+.+++++..+||..|+.+++-.+. . + .
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~-----~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS-----KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccccc-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 5555888999999999999999988866422221 2235677889999999999999766665553 1 1 1
Q ss_pred HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccc----cc----------------ccccCcCcHHH
Q 003008 496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKS----KF----------------YDIPVNGSEKG 555 (858)
Q Consensus 496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~----~~----------------~i~~~~~i~~L 555 (858)
....+.+ .+...+-..+.+.+ -.++..|...|+.+-.-+.+.-. |. .....|+|..-
T Consensus 274 ~e~kl~D-~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 274 EEEKLKD-AAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhhHH-HHHHHHHHHHhcCc--eeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 1111211 23445555666444 56777777777665542211100 00 00001111000
Q ss_pred HHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 556 LDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 556 i~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
-+. +.++-.. .+++.. ..++.+|+-..++.-|+++..+|++.|+..+..|+.+.+.
T Consensus 351 k~~----~advpse--------e~d~~~-~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~ 406 (823)
T KOG2259|consen 351 KEW----NADVPSE--------EDDEEE-ESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG 406 (823)
T ss_pred ccc----cccCchh--------hccccc-cccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC
Confidence 000 0000000 011122 4578888888999999999999999999999999886654
No 119
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.91 E-value=0.29 Score=55.40 Aligned_cols=158 Identities=17% Similarity=0.110 Sum_probs=106.2
Q ss_pred cCCCcHHHHHHHh---------cCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-----CHHHHH
Q 003008 99 FGDSYVALFVQML---------GLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-----SSAACE 164 (858)
Q Consensus 99 ~~~g~i~~lv~lL---------~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-----~~~~~~ 164 (858)
....++..|..+- ..+.++++...|+++|+|+-......+ .+..+.|..+.++..|+.. +.++..
T Consensus 19 ~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR-~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~F 97 (446)
T PF10165_consen 19 FTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSAR-QIFVDLGLAEKLCERLKNYSDSSQPSDVEF 97 (446)
T ss_pred ccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHH-HHHHHcCcHHHHHHHHHcccccCCChhHHH
Confidence 3455566666644 225678999999999999999888754 4555899999999999877 678888
Q ss_pred HHHHHHHHhhc-CchhHHHHHh-cCcHHHHHHHhcCC---------------CCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008 165 AAAGLLRSISS-INVYRDLVAE-CGAIEEITGLLTRP---------------SLTSEVKEQSMCTLWNLSVDKKHRLKIA 227 (858)
Q Consensus 165 ~a~~aL~nLs~-~~~~~~~i~~-~g~i~~Lv~lL~~~---------------~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 227 (858)
...+.|.-++. ..+.+..+.+ .+++..++..|... +.+......+++++.|+..+......--
T Consensus 98 l~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~ 177 (446)
T PF10165_consen 98 LDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEE 177 (446)
T ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchh
Confidence 88898888865 4466766665 67887776644321 0134556678999999975433222112
Q ss_pred hCCCHHHHHHHHccC---------CHHHHHHHHHHHHHH
Q 003008 228 NTDILPLLIKSLEDE---------NMKVKEAAGGVLANL 257 (858)
Q Consensus 228 ~~g~i~~Lv~ll~~~---------~~~~~~~a~~~L~nL 257 (858)
....++.|+.++..- .......+..+|.|+
T Consensus 178 ~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nl 216 (446)
T PF10165_consen 178 FSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNL 216 (446)
T ss_pred hhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCC
Confidence 344555555554311 235677778888877
No 120
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.85 E-value=0.03 Score=61.31 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=109.3
Q ss_pred HHHHHHHHhhcCc---hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch-HHHHHhCCCHHHHHHHHc
Q 003008 165 AAAGLLRSISSIN---VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLIKSLE 240 (858)
Q Consensus 165 ~a~~aL~nLs~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~ 240 (858)
.+++.+.-.+... --|..+.+..+.++|+++|..+ +..+..-+...++|+-..-++ +..+.+.|.+..|+.++.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P--eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP--EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc--cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 3555555444443 3688888999999999999987 777778889999998765554 888889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHcCCcCch--HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh
Q 003008 241 DENMKVKEAAGGVLANLALSKSNH--NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD 305 (858)
Q Consensus 241 ~~~~~~~~~a~~~L~nL~~~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~ 305 (858)
+.+..++....|.|+++-++.+.- ..+...-++..++++.+.+. . .+++.+..+|.|+..+.
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc--~-~vq~q~lQilrNftc~~ 547 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC--F-KVQHQVLQILRNFTCDT 547 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc--c-ccHHHHHHHHHhccccc
Confidence 888899999999999999886544 35677778899999986542 2 38899999999998864
No 121
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.81 E-value=4.3 Score=45.51 Aligned_cols=68 Identities=22% Similarity=0.166 Sum_probs=47.3
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
..|.|-.+|++.-..|...++.++..++... .-..+.+ ..+..|-.+|+.+. ...|-.|..+|..++.
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~-~~vs~L~~fL~s~r--v~~rFsA~Riln~lam 332 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVD-QTVSSLRTFLKSTR--VVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHH-HHHHHHHHHHhcch--HHHHHHHHHHHHHHHh
Confidence 5677788888888999999998888877511 0111111 24566666777444 7778889999999987
No 122
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.064 Score=58.84 Aligned_cols=166 Identities=13% Similarity=0.110 Sum_probs=120.7
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISS-INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222 (858)
Q Consensus 144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~ 222 (858)
+...+..|+++|..++..+.--+...++|+.. .+.-+..+.+.|.|..|+.++.+. |...+....|.|+.+-.++++
T Consensus 429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK--DdaLqans~wvlrHlmyncq~ 506 (743)
T COG5369 429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK--DDALQANSEWVLRHLMYNCQK 506 (743)
T ss_pred ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--hhhhhhcchhhhhhhhhcCcc
Confidence 45678999999999877777778888999865 456788899999999999999987 889999999999999866544
Q ss_pred --HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc----CchHHHHhCC----CHHHHHHHHccCCCCCHHHHH
Q 003008 223 --RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK----SNHNILVEAG----VIPKLAMLLKANVEGSKVIRK 292 (858)
Q Consensus 223 --~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~----~~~~~i~~~g----~i~~Lv~ll~~~~~~~~~~~~ 292 (858)
+-+....-++..++.+...+.-.++.++.-.|.|++.+. ..+..+.+.- ....|++.++..+ |...+
T Consensus 507 ~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~n---p~~i~ 583 (743)
T COG5369 507 NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENN---PMEIL 583 (743)
T ss_pred hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcC---chhhh
Confidence 666667778999999999999999999999999998742 2333333322 2345555555432 22333
Q ss_pred HHHHHHHHHhc-ChhhHHHHHHc
Q 003008 293 EARNALIELAK-DDYYRILIIEE 314 (858)
Q Consensus 293 ~a~~aL~nl~~-~~~~~~~i~~~ 314 (858)
..+-.|.+++. ++.-+..+.+.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q 606 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQ 606 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhH
Confidence 44556666666 44444444443
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.93 Score=51.33 Aligned_cols=188 Identities=15% Similarity=0.038 Sum_probs=110.2
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHH-HHHHHHHhhcChhHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLA-TTHALERLSVSRGVCQIME 501 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~-a~~aL~~Ls~~~~~~~~l~ 501 (858)
..+-+.+++++.+-.-+..+++.++.+..+ .....+.+.+.+..|...+.+.+...++. +..+......+-. ...
T Consensus 135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~ 210 (569)
T KOG1242|consen 135 VLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPF 210 (569)
T ss_pred HHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCC
Confidence 667788889988888899999998885542 22345566788888888888776554443 3333222222000 011
Q ss_pred HcCChHHHHHhhcC-CCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008 502 AEGVVHPLVNTLKN-LDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE 579 (858)
Q Consensus 502 ~~g~i~~Li~lL~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~ 579 (858)
+-+.++.+-.++.. ++....+|+.+..+...+...-.....+ ..++.++.-+....=..+..++ .+..+...
T Consensus 211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK------~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK------LLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 22334444444432 2334677777666655444300011111 1133333333322223344555 66666655
Q ss_pred ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 580 TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 580 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
...+ -.......+|.+.+.|-+..++++..+..+|.++..-
T Consensus 285 ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 285 APKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred chHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 5555 5566678899999999999999999999999887653
No 124
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.66 E-value=1.9 Score=43.71 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc
Q 003008 439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI 518 (858)
Q Consensus 439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~ 518 (858)
+..|.-.|.|+.. ..+|..|+.=+..++.-.|..++.+|+.|-+.. .||.|...|.+..+
T Consensus 173 Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 173 RYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETE 232 (289)
T ss_pred HHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhc
Confidence 3455555555544 345666777777777778888888887776422 47778877777777
Q ss_pred cHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 519 SESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 519 ~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
.+.+|..|+.+|+.++. ...++.|.+++.++++-++..+.
T Consensus 233 ~pMVRhEaAeALGaIa~-------------e~~~~vL~e~~~D~~~vv~esc~ 272 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIAD-------------EDCVEVLKEYLGDEERVVRESCE 272 (289)
T ss_pred chHHHHHHHHHHHhhcC-------------HHHHHHHHHHcCCcHHHHHHHHH
Confidence 77788888888888776 22466777777776666666555
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.15 Score=59.75 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=47.6
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL 816 (858)
.++++.+++.++++.||+.|+.|+.++..-. .....+.|.+..+..++.+.++.|...|..+|..+
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~ld----~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i 193 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD----KDLYHELGLIDILKELVADSDPIVIANALASLAEI 193 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC----HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHh
Confidence 5677777778888888888888887775332 23555667777777777788888877777777665
No 126
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.44 E-value=0.042 Score=48.92 Aligned_cols=70 Identities=23% Similarity=0.368 Sum_probs=59.8
Q ss_pred cHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 423 GVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 423 ~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
.+..|+.+| .+.|+.+..-||.=|+.+. ..|+.|..+-+.|+-..++.|+.+++++||..|..|+..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 788999999 5668889999999999944 678888888899999999999999999999999999887753
No 127
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=5.2 Score=50.10 Aligned_cols=109 Identities=19% Similarity=0.074 Sum_probs=66.0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
.+|.|..+=-+|+..||.....+...+-.++.....-.-.....-|+.-|.+....||+.++.||..|-..++.-+...
T Consensus 999 LIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e- 1077 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKE- 1077 (1702)
T ss_pred hhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHH-
Confidence 5677777778899988876655544455443433333334456666666778889999999999999988544333222
Q ss_pred cCChHHHHHhh-cC-CCccHHHHHHHHHH---HHHhc
Q 003008 503 EGVVHPLVNTL-KN-LDISESLMEKTLDI---LGRIL 534 (858)
Q Consensus 503 ~g~i~~Li~lL-~~-~~~~~~~~~~a~~~---L~~l~ 534 (858)
-+|.++..+ +. .+..+.+|+.+..+ |+.++
T Consensus 1078 --~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1078 --KLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444322 21 13346677765544 44444
No 128
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.20 E-value=0.26 Score=46.34 Aligned_cols=124 Identities=14% Similarity=0.163 Sum_probs=92.1
Q ss_pred HHHHHHcCChHHHHHhhcCCCc----cHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHHHHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDI----SESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIELTG 570 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a 570 (858)
...+.+.||+..|+.++.++.. .......+..++..|.+.|. ..+...+..-+...+++.+. .|+.+...+
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~---vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~s 80 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI---VSWDTLSDSFIKKIASYVNSSAMDASILQRS 80 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc---CchhhccHHHHHHHHHHHccccccchHHHHH
Confidence 3467788999999999987664 24566677888888887432 22333333445666666664 368888888
Q ss_pred H-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 571 N-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 571 ~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+ .+.+++..+...+..+.+.-.++.|+..|+..++++|.++...+..|-...+
T Consensus 81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 8 8888887776643777777789999999999999999999999998876543
No 129
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.06 E-value=0.13 Score=50.57 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHh----------------cCcHHHHHHHhcCCC----CCHHHHHHHHHHHHHhccCc
Q 003008 161 AACEAAAGLLRSISSINVYRDLVAE----------------CGAIEEITGLLTRPS----LTSEVKEQSMCTLWNLSVDK 220 (858)
Q Consensus 161 ~~~~~a~~aL~nLs~~~~~~~~i~~----------------~g~i~~Lv~lL~~~~----~~~~~~~~a~~~L~nLs~~~ 220 (858)
.....++..|.||+..+.....+.+ ...+..|++++..+. ....-..+.+.+|.|++..+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 3455678888888887765554433 225778888665521 13345678999999999999
Q ss_pred chHHHHHh--CCC--HHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhC---CCHHHHHHHHc
Q 003008 221 KHRLKIAN--TDI--LPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEA---GVIPKLAMLLK 281 (858)
Q Consensus 221 ~~~~~i~~--~g~--i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~---g~i~~Lv~ll~ 281 (858)
+.|..+.. .+. +..|+..+.+.+.--|.-++.++.|+|...+....+... +.+|.|+--|.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999983 344 667777778887777889999999999998888776553 34555555443
No 130
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.89 E-value=0.56 Score=44.21 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=96.0
Q ss_pred HHHHhcCcHHHHHHHhcCCCC----CHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHHHHHHH
Q 003008 181 DLVAECGAIEEITGLLTRPSL----TSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEAAGGVL 254 (858)
Q Consensus 181 ~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~a~~~L 254 (858)
..+...||+..|+++++++.. ..++..+++.++.+|=.+.-.-........|..++..+... +..+...|+..|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 456678899999999998842 24778888999988877665555666777888888888765 678999999999
Q ss_pred HHHcCCcCchHHHHhCCC-HHHHHHHHccCCCCCHHHHHHHHHHHHHHhc--ChhhHHHHH
Q 003008 255 ANLALSKSNHNILVEAGV-IPKLAMLLKANVEGSKVIRKEARNALIELAK--DDYYRILII 312 (858)
Q Consensus 255 ~nL~~~~~~~~~i~~~g~-i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~--~~~~~~~i~ 312 (858)
-++..++......++..+ ++.|+..|+.. .+.++.++...+-.|.. +++.|+.+.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~---~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS---NQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC---CHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999998877666666555 99999999874 34577777766655544 344454443
No 131
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.60 E-value=1.7 Score=44.33 Aligned_cols=196 Identities=19% Similarity=0.130 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-------C--CH---HHHHHHHHHHHHhhcCchhHHHH
Q 003008 116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-------E--SS---AACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-------~--~~---~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
+++.|+.|+..|..--..-++-.-.+....|.+..|++=.-+ + +. .-..+|...|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 456799998888766544333323445567888777665532 1 12 22335777778889999999999
Q ss_pred HhcCcHHHHHHHhcCCCCC---HHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 184 AECGAIEEITGLLTRPSLT---SEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
.++...--|..+|+..+.+ ...+-.++++++.|...++ .-..+.+...+|..++.+..|++-.+.-|..++..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9998877777777765322 3467778899999876443 3556668899999999999999888899999999887
Q ss_pred CCcCchHHHH-------h-CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHH
Q 003008 259 LSKSNHNILV-------E-AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIE 313 (858)
Q Consensus 259 ~~~~~~~~i~-------~-~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~ 313 (858)
.++.+-..+. . ..++..+|.-+... .++.+-++..++-..|+.++..|..+..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~--pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ--PSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC--CChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6654322221 1 23455666644332 2667888999999999999999988876
No 132
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=3.2 Score=48.10 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=92.1
Q ss_pred hCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHH
Q 003008 431 LGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 431 L~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li 510 (858)
|++|++.+|-...+.|+.+-. ++. -...+|.+...|.|.+.-||++|..|+..+-...+ .+.. -.|.|+
T Consensus 108 LQHPNEyiRG~TLRFLckLkE-~EL-----lepl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--DapeLi 176 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE-PEL-----LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--DAPELI 176 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc-HHH-----hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--ChHHHH
Confidence 678899999999998888643 221 13456666778899999999999999888765311 1110 123344
Q ss_pred H-hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc---CCChhHHHHHH-HHHHhhccccchhh
Q 003008 511 N-TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE---SLDPSIELTGN-VIEAAVSETTTSYG 585 (858)
Q Consensus 511 ~-lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~---s~d~~v~~~a~-~l~~L~~~~~~~~~ 585 (858)
. .|. .+.++..++.|-..|...-. +. ++.++..... +-++..+...+ .|+.-+...
T Consensus 177 ~~fL~-~e~DpsCkRNAFi~L~~~D~---Er----------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~----- 237 (948)
T KOG1058|consen 177 ESFLL-TEQDPSCKRNAFLMLFTTDP---ER----------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN----- 237 (948)
T ss_pred HHHHH-hccCchhHHHHHHHHHhcCH---HH----------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----
Confidence 3 232 45557777776655544322 11 1222222211 11233333333 332222111
Q ss_pred hHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcch
Q 003008 586 KVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSM 625 (858)
Q Consensus 586 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~ 625 (858)
.-.+..-|..+..+|.+.++.+...|+.+|-.++.++...
T Consensus 238 p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~al 277 (948)
T KOG1058|consen 238 PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTAL 277 (948)
T ss_pred HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHH
Confidence 1112335677777887777777777777777776655443
No 133
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.43 E-value=0.77 Score=54.15 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=114.5
Q ss_pred hCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHH
Q 003008 431 LGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPL 509 (858)
Q Consensus 431 L~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~L 509 (858)
+.+.+...+..|.+-+-. +...++. .-..+.+++...+.+.++++-.-.-|.+.+........+ ++..+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dm------ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDM------SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHH
Confidence 455556666655554444 5543332 224455566666778899988888888888733212111 35666
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHh
Q 003008 510 VNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVL 588 (858)
Q Consensus 510 i~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~ 588 (858)
..=+.+++ +.+|-.|..+++.+-.+. .-...++++.+++.++++.|+++|+ |+..+.+-.. ....
T Consensus 98 ~kDl~d~N--~~iR~~AlR~ls~l~~~e---------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~ 163 (757)
T COG5096 98 QKDLQDPN--EEIRGFALRTLSLLRVKE---------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYH 163 (757)
T ss_pred HhhccCCC--HHHHHHHHHHHHhcChHH---------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhh
Confidence 66677565 889999998888776511 1123477888899999999999999 8888865443 3466
Q ss_pred hccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 589 DSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 589 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
+.|.+..+..++.+.+|.+...|+.+|..+-..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 778888888888999999999999998887443
No 134
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.25 E-value=3.7 Score=46.35 Aligned_cols=257 Identities=11% Similarity=0.056 Sum_probs=143.3
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC---cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCch
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD---KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH 264 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~ 264 (858)
.|...+.+|++. .|.++..|+.+...|+.- ...-..+...| -.|.+-|....+++.-..+.++..+......+
T Consensus 605 ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 605 IVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 356667789998 889999998887777521 11223333444 34667777788888888888887776554333
Q ss_pred H-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hh---hHHHHHHc-CCcccccccccccccCCccCCCCC
Q 003008 265 N-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DY---YRILIIEE-GLVPVPMVGADAYKSFRPELHSWP 338 (858)
Q Consensus 265 ~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~---~~~~i~~~-g~v~~~Lv~ll~~~~~~~~l~~~~ 338 (858)
. .=--.|.+|.|.-.|++. .+.++.+....+..+|.+ ++ -|+.|+=+ + |++.+
T Consensus 681 ~mqpPi~~ilP~ltPILrnk---h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfe-----Lvd~L------------- 739 (975)
T COG5181 681 SMQPPISGILPSLTPILRNK---HQKVVANTIALVGTICMNSPEYIGVREWMRICFE-----LVDSL------------- 739 (975)
T ss_pred ccCCchhhccccccHhhhhh---hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHH-----HHHHH-------------
Confidence 2 111247889999999876 344777888888888874 32 23333322 2 44432
Q ss_pred CCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccc
Q 003008 339 SLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLL 418 (858)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l 418 (858)
.+-++..+..|..++.-++..-...++-..-++.+-.+.+||-.+..-.+.+..+ .+.+
T Consensus 740 ---------ks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae-----~cgp------- 798 (975)
T COG5181 740 ---------KSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAE-----YCGP------- 798 (975)
T ss_pred ---------HHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHh-----hcCc-------
Confidence 1111133333444444332111101111111222222223332222211111000 0000
Q ss_pred cccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcCh
Q 003008 419 PWIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSR 494 (858)
Q Consensus 419 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~ 494 (858)
-.++|+|+.=-..++..+|.-..++++.+-. ....+..+ .-..|.|-+-|.+.++.-|+.|...+..|+.+.
T Consensus 799 --fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 799 --FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred --hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 1266777777778889999988888887321 11222222 234566777888899999999999999998753
No 135
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.15 E-value=0.31 Score=47.97 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=69.5
Q ss_pred CcHHHHHHHHccC------CHHHHHHHHHHHHHhhcCchhHHHHHh--cCc--HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 003008 146 GCINLTVNLLRSE------SSAACEAAAGLLRSISSINVYRDLVAE--CGA--IEEITGLLTRPSLTSEVKEQSMCTLWN 215 (858)
Q Consensus 146 g~i~~Li~lL~~~------~~~~~~~a~~aL~nLs~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~~~a~~~L~n 215 (858)
..+..|+.....+ ...-....+..+.|++..++.|..+.+ .+. +..|+.+..+. +..-+..++.+|.|
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRN 129 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHH
Confidence 3577777777652 234455688999999999999999987 344 67788888887 88888999999999
Q ss_pred hccCcchHHHHHh---CCCHHHHHHHHc
Q 003008 216 LSVDKKHRLKIAN---TDILPLLIKSLE 240 (858)
Q Consensus 216 Ls~~~~~~~~i~~---~g~i~~Lv~ll~ 240 (858)
+|++.+....+.. .+.+|.|+--|.
T Consensus 130 ccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 130 CCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999887666664 345555554444
No 136
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.78 E-value=0.68 Score=47.48 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcC-CcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhc
Q 003008 438 AIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDH-SSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLK 514 (858)
Q Consensus 438 v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~ 514 (858)
....|.+.|..++ -++..+..+.+..+++.|+++|.. ..+.++.++..+|..+-. ++.+...+.+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4556778888855 689999999999999999999954 568999999888877765 8999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHHhc
Q 003008 515 NLDISESLMEKTLDILGRIL 534 (858)
Q Consensus 515 ~~~~~~~~~~~a~~~L~~l~ 534 (858)
+.+.+.+++-.+...|.-..
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred cccccHHHhHHHHHHHHHHH
Confidence 88888888888887765443
No 137
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.77 E-value=0.11 Score=34.39 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.6
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003008 748 IPRLIEQIKSFSSEAREAAVIELNRIIS 775 (858)
Q Consensus 748 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 775 (858)
+|.+++++++++++||.+|+.+|.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999998763
No 138
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.72 E-value=0.085 Score=34.88 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.1
Q ss_pred chHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008 791 IFPLVKLIEEGSNRAVEAGLAILYNLSMD 819 (858)
Q Consensus 791 i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~ 819 (858)
+|.++++++|++++||..|+.+|.+++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 58899999999999999999999988653
No 139
>PRK14707 hypothetical protein; Provisional
Probab=93.46 E-value=34 Score=44.88 Aligned_cols=210 Identities=11% Similarity=0.064 Sum_probs=114.4
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHH-HHHHHHHHHHHhhcChhHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDA-VRLATTHALERLSVSRGVCQI 499 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~-v~~~a~~aL~~Ls~~~~~~~~ 499 (858)
++-..|-.+-+-++..+-..++.+|.. ++++.+.++.+--.+....|-.+-+=++.. .+..+-.....|+..++.++.
T Consensus 416 ~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a 495 (2710)
T PRK14707 416 GVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKA 495 (2710)
T ss_pred hHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhh
Confidence 355566677788999999999999999 888888888777666555555555545544 444555555666767888888
Q ss_pred HHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhh-cCCChhHHHHHH-HHHHhh
Q 003008 500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAA-ESLDPSIELTGN-VIEAAV 577 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll-~s~d~~v~~~a~-~l~~L~ 577 (858)
+.-.++...|-.+-+-++ .....+.+.++-..+.. +......+. ...+..+++-+ +.++.+....+. .|..+.
T Consensus 496 ~~~q~~~~~L~aLSK~Pd-~~~c~~A~~~lA~rl~~---~~~l~~~~~-~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 496 LKPQEVVIALHSLSKWPD-TPICAEAASALAERVVD---ELQLRKAFD-AHQVVNTLKALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred cCHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHhcc---chhhhhhhh-hHHHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence 777666666666666444 34444555555555554 111111111 11223333333 345555555555 444433
Q ss_pred ccccchhhhHhhccchhHHHHhhcC-CCHH-HHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHH
Q 003008 578 SETTTSYGKVLDSVFIGRMIGIMKT-SYPD-LQRKAASILEFITIIDPSMDTIISADIESGLDAIF 641 (858)
Q Consensus 578 ~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~ 641 (858)
.+.... ..-.+.-.+..++..|+. ++.. -+..+.++-..+...++.+..+ ...++..++
T Consensus 571 ~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l----~~q~lan~l 631 (2710)
T PRK14707 571 ADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKEL----DPVDVTNVL 631 (2710)
T ss_pred hcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhc----cHHHHHHHH
Confidence 322222 333445556777777754 3333 3333334444444433332333 344444444
No 140
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=8.7 Score=44.70 Aligned_cols=139 Identities=16% Similarity=0.101 Sum_probs=83.1
Q ss_pred cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhc-----C----CCccHHHHHHHHHHHHH
Q 003008 462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLK-----N----LDISESLMEKTLDILGR 532 (858)
Q Consensus 462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~-----~----~~~~~~~~~~a~~~L~~ 532 (858)
.|.+--++..|++++-+||..+......|..+.. +..++.+|+ . .+.....|.....++..
T Consensus 316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ 385 (948)
T KOG1058|consen 316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHA 385 (948)
T ss_pred HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHH
Confidence 4556667788899999999998888777776443 222222221 1 22234567777777777
Q ss_pred hcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc-chhhhHhhccchhHHHHhhc-CCCHHHHH
Q 003008 533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT-TSYGKVLDSVFIGRMIGIMK-TSYPDLQR 609 (858)
Q Consensus 533 l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~-~~~~~i~~~g~i~~L~~lL~-s~~~~v~~ 609 (858)
.+. .+. -.....++.+++.+++.++......+ -+....+... .| ...|..|++-+. -..+.+-+
T Consensus 386 cav---~Fp----~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------~~ii~~l~~~~~~irS~ki~r 452 (948)
T KOG1058|consen 386 CAV---KFP----EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------ASIIEKLLETFPQIRSSKICR 452 (948)
T ss_pred Hhh---cCh----HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------HHHHHHHHHhhhhhcccccch
Confidence 766 222 23345688999999988876655555 4444443322 22 223344444432 24556778
Q ss_pred HHHHHHHHhhcCCc
Q 003008 610 KAASILEFITIIDP 623 (858)
Q Consensus 610 ~a~~~L~~l~~~~~ 623 (858)
.|+|+++-......
T Consensus 453 galwi~GeYce~~~ 466 (948)
T KOG1058|consen 453 GALWILGEYCEGLS 466 (948)
T ss_pred hHHHHHHHHHhhhH
Confidence 88888887765544
No 141
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.19 E-value=4.3 Score=45.53 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch
Q 003008 118 LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~ 178 (858)
-+...+++.++.++..+-.. ..+ ...+..|-.+|++.....|-.|.+.|..|++..+
T Consensus 279 mV~lE~Ar~v~~~~~~nv~~--~~~--~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 279 MVFLEAARAVCALSEENVGS--QFV--DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred hhhHHHHHHHHHHHHhccCH--HHH--HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 57788888888887755331 333 4577888888999888899999999999988543
No 142
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=93.09 E-value=4.4 Score=49.49 Aligned_cols=250 Identities=18% Similarity=0.203 Sum_probs=142.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC----cCch
Q 003008 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS----KSNH 264 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~----~~~~ 264 (858)
++.+...++.- .....+..|+..|..||..-+.-.++ .-.+|-++.++.....+||..|+.+|..+-.. +..-
T Consensus 424 vs~lts~IR~l-k~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRAL-KTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhh-hcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 45555555553 25678899999999998432222222 44689999999999999999999999887532 2222
Q ss_pred HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh----hHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008 265 NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY----YRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL 340 (858)
Q Consensus 265 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~----~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~ 340 (858)
..+.-+=.+|.|-.++...+ ...++-.-+..|.-|+.... .-..+...|.... ... +
T Consensus 501 aniF~eYlfP~L~~l~~d~~--~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~-~ns------e---------- 561 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSS--AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLND-PNS------E---------- 561 (1431)
T ss_pred chhhHhhhhhhhHhhhccCc--cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccC-ccc------c----------
Confidence 23333455677777775532 22244455566666654211 1111122221110 000 0
Q ss_pred CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008 341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW 420 (858)
Q Consensus 341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 420 (858)
. . ... --+....+++.
T Consensus 562 ---t-----------------~-----~~~---~~~~~~~~L~~------------------------------------ 577 (1431)
T KOG1240|consen 562 ---T-----------------A-----PEQ---NYNTELQALHH------------------------------------ 577 (1431)
T ss_pred ---c-----------------c-----ccc---ccchHHHHHHH------------------------------------
Confidence 0 0 000 00001111111
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHc----CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEA----GAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV 496 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~----g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~ 496 (858)
.+-...+.||.++++-|++.-...|.-+|. .+... =.++.|+..|.+.+..+|-+=...+.-++..-..
T Consensus 578 -~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~ 650 (1431)
T KOG1240|consen 578 -TVEQMVSSLLSDSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW 650 (1431)
T ss_pred -HHHHHHHHHHcCCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence 112234567777777888877777776553 12222 2588999999999888887655555444331111
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
| -++++.+|.|.+-|.+++ +-|...|..+|.-|+.
T Consensus 651 r--s~seyllPLl~Q~ltD~E--E~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 651 R--SVSEYLLPLLQQGLTDGE--EAVIVSALGSLSILIK 685 (1431)
T ss_pred e--eHHHHHHHHHHHhccCcc--hhhHHHHHHHHHHHHH
Confidence 1 124567888888898776 6777788888887776
No 143
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=28 Score=42.53 Aligned_cols=150 Identities=16% Similarity=0.175 Sum_probs=89.0
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhhcCchh
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES-SAACEAAAGLLRSISSINVY 179 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~-~~~~~~a~~aL~nLs~~~~~ 179 (858)
++.+..|++.|+ +.|..+|..|++.++.++.--+. ... ..+|...+.++...+ +..-..++-+|..|+..---
T Consensus 340 E~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp~---~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL 413 (1133)
T KOG1943|consen 340 EFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLPP---ELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL 413 (1133)
T ss_pred HHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCcH---HHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc
Confidence 467777788886 78889999999999999876552 222 456677777655443 55555788888888764311
Q ss_pred HHHHHhcCcHHHHHHHhcCC------CCCHHHHHHHHHHHHHhccCcch---HHHHHhCCCHHHHHHHHccCCHHHHHHH
Q 003008 180 RDLVAECGAIEEITGLLTRP------SLTSEVKEQSMCTLWNLSVDKKH---RLKIANTDILPLLIKSLEDENMKVKEAA 250 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~------~~~~~~~~~a~~~L~nLs~~~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~a 250 (858)
..... ..++|.+++-|.-. +....++..|+-+.|.++..-+. +. +.+.=.-..|+..+-+++-.+|..|
T Consensus 414 lps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 414 LPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred chHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHH
Confidence 11111 12355555543311 01345788888888888743221 22 2211111123333445566789999
Q ss_pred HHHHHHHc
Q 003008 251 GGVLANLA 258 (858)
Q Consensus 251 ~~~L~nL~ 258 (858)
..++....
T Consensus 492 sAAlqE~V 499 (1133)
T KOG1943|consen 492 SAALQENV 499 (1133)
T ss_pred HHHHHHHh
Confidence 99987654
No 144
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.84 E-value=2.5 Score=51.45 Aligned_cols=108 Identities=17% Similarity=0.083 Sum_probs=72.3
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
.++.|+.+|++.|+.+|..=...+..++..-- ..-++++.+|.|.+-|.+..+.|...|..+|..|....-.++..+.
T Consensus 618 iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~ 695 (1431)
T KOG1240|consen 618 ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK 695 (1431)
T ss_pred hHHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH
Confidence 67788999999988888776666665332111 0113467788888889999999999999888888864333332221
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
..++...-+|-.|+ ..+|..++..+.....
T Consensus 696 -~i~~~v~PlL~hPN--~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 696 -DILQDVLPLLCHPN--LWIRRAVLGIIAAIAR 725 (1431)
T ss_pred -HHHHhhhhheeCch--HHHHHHHHHHHHHHHh
Confidence 13344444555566 7889988888776654
No 145
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=30 Score=42.30 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=71.4
Q ss_pred cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008 462 AGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
++.++.|..-|++.+..||-.|+.-++.++. .| .. +. ..+|...++++. +-+++..-.-++.+|+.++..|.-.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~-La-d~vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PE-LA-DQVIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HH-HH-HHHHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcc
Confidence 5788889999999999999999999999998 33 11 11 135677777665 5555666778899999998754322
Q ss_pred ccccccccCcCcHHHHHhhcCCC--------hhHHHHHH-HHHHhhcccc
Q 003008 541 KSKFYDIPVNGSEKGLDAAESLD--------PSIELTGN-VIEAAVSETT 581 (858)
Q Consensus 541 ~~~~~i~~~~~i~~Li~ll~s~d--------~~v~~~a~-~l~~L~~~~~ 581 (858)
..+. ...++.++.-+.-++ ..++..|| .+..+...+.
T Consensus 415 ps~l----~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays 460 (1133)
T KOG1943|consen 415 PSLL----EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS 460 (1133)
T ss_pred hHHH----HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC
Confidence 2111 123444444443322 35666676 6655554443
No 146
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.62 E-value=7.3 Score=41.82 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=109.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHH---HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC---hhH
Q 003008 424 VARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFK---EAGAIKYLVKLLDHSSDAVRLATTHALERLSVS---RGV 496 (858)
Q Consensus 424 i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~---~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~---~~~ 496 (858)
+...+..+.......|..+...+.+ +....- ..++ ..-.+..+.+.++.+..+-+..|+.+++-++-. .+.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 4455666777778999999999999 433211 1222 234577778888877766666777777776552 122
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC-cccccccccccCcCcH--HHHHhhcC----------CC
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS-KEMKSKFYDIPVNGSE--KGLDAAES----------LD 563 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~i~~~~~i~--~Li~ll~s----------~d 563 (858)
...+.+ ...|.|...+.+++....++..++.||+-++.-+ .+...-... -..+. +.....++ ++
T Consensus 123 ~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~--~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 123 SEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEEL--MESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred HHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 333333 3678888899877666667777777776654311 011100000 00112 11111121 12
Q ss_pred hhHHHHHH-HHHHhhccccc-hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 564 PSIELTGN-VIEAAVSETTT-SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 564 ~~v~~~a~-~l~~L~~~~~~-~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
+.+...|+ +-..|+..-.. ...... ...+|.|..+|.+.+.+||..|-.+|+-|.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34555555 44444322221 102111 346899999999999999999999888774
No 147
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.59 E-value=0.69 Score=40.05 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=47.8
Q ss_pred cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008 462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533 (858)
Q Consensus 462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l 533 (858)
...+++++..+.+++..||..|+.+|.|++........-.-....+.|..++.+++ +.++..| ..|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d--~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD--ENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hhHHHHH-HHHHHH
Confidence 45799999999999999999999999999973221111112345667777887665 6666554 444443
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.58 E-value=0.3 Score=43.61 Aligned_cols=71 Identities=13% Similarity=0.179 Sum_probs=56.3
Q ss_pred hcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008 745 YEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816 (858)
Q Consensus 745 ~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL 816 (858)
...+..|+++|. +.++.+..-||.=|+.++...+. ....+-+.|+-..+++++++++++||..|+.++..|
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 346899999995 77888888899999998877654 444666788888888999999999999999998554
No 149
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.47 E-value=0.63 Score=37.72 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC-CcHHHHHHHHHHHHHhhcChhHHHHHHHcCC
Q 003008 439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH-SSDAVRLATTHALERLSVSRGVCQIMEAEGV 505 (858)
Q Consensus 439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~ 505 (858)
+..|.+++++++.++.....+.+.+.++.++++..+ +...+|-.|..+|+-++...+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence 467899999998888888888889999999999875 4589999999999999999998888887764
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.04 E-value=11 Score=40.36 Aligned_cols=108 Identities=24% Similarity=0.244 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC---cCchH
Q 003008 191 EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLEDENMKVKEAAGGVLANLALS---KSNHN 265 (858)
Q Consensus 191 ~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~---~~~~~ 265 (858)
..+..+... ....|+.++..+.++....-....+. ....+..+.+.++.+..+-+..|+.++.-++-. .....
T Consensus 47 ~~Id~l~eK--~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEK--SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334444444 56777777777777653322212221 233567888889988776677787877777654 23344
Q ss_pred HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008 266 ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302 (858)
Q Consensus 266 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~ 302 (858)
.+.+ ...|.|...+..++. ....+..++.+|.-++
T Consensus 125 ei~~-~~~~~L~~~l~d~s~-~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSA-SPKARAACLEALAICT 159 (309)
T ss_pred HHHH-HHHHHHHHHHhCCcc-chHHHHHHHHHHHHHH
Confidence 5544 567888888876643 3445556666666655
No 151
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.91 E-value=2.4 Score=41.54 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH-HHHHH
Q 003008 116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI-EEITG 194 (858)
Q Consensus 116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i-~~Lv~ 194 (858)
|+.+|.+++.+++.++..-++ ++ ...++.+...|+++++.+|..|+..|..|...+-.+ -.|-+ ..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHH
Confidence 467999999999999875443 33 567899999999999999999999999997654211 12333 77788
Q ss_pred HhcCCCCCHHHHHHHHHHHHHhccC
Q 003008 195 LLTRPSLTSEVKEQSMCTLWNLSVD 219 (858)
Q Consensus 195 lL~~~~~~~~~~~~a~~~L~nLs~~ 219 (858)
++.++ +++++..|...+..+...
T Consensus 71 ~l~D~--~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDE--NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCC--CHHHHHHHHHHHHHHHHh
Confidence 88887 999999999999888765
No 152
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.56 E-value=0.91 Score=44.46 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHh
Q 003008 759 SSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRI 838 (858)
Q Consensus 759 ~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~l 838 (858)
++.+|.+++.+++-|+...+. .... .++.+...|+|+++.||+.|+.+|..|...+-.+. +...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-~ve~-----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-LVEP-----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-HHHh-----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHH
Confidence 578999999999998876654 2222 24788899999999999999999999987654432 11223677788
Q ss_pred hhcCChhH-HHHHHHHhc
Q 003008 839 VLSQRPQW-TRALRLLRN 855 (858)
Q Consensus 839 l~~~~~~~-~~al~~l~~ 855 (858)
+.++++.+ ..|...+..
T Consensus 72 l~D~~~~Ir~~A~~~~~e 89 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSE 89 (178)
T ss_pred HcCCCHHHHHHHHHHHHH
Confidence 88999988 555555443
No 153
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.04 E-value=4.1 Score=44.67 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=100.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhhcCch----hHHHHHhcCcHHHHHHHhcCCC---C--CHHHHHHHHHHHHHhccCc
Q 003008 150 LTVNLLRSESSAACEAAAGLLRSISSINV----YRDLVAECGAIEEITGLLTRPS---L--TSEVKEQSMCTLWNLSVDK 220 (858)
Q Consensus 150 ~Li~lL~~~~~~~~~~a~~aL~nLs~~~~----~~~~i~~~g~i~~Lv~lL~~~~---~--~~~~~~~a~~~L~nLs~~~ 220 (858)
.+..++...+++.+-.|+-..-.+..+++ +|+.+.++=|.+-+-+++.+.+ + +...+..+..+|.-+|..+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 35667777788888888888888887654 7888999888898888888653 1 2244556778888889888
Q ss_pred ch--HHHHHhCCCHHHHHHHHccC-CHH------HHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHc
Q 003008 221 KH--RLKIANTDILPLLIKSLEDE-NMK------VKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLK 281 (858)
Q Consensus 221 ~~--~~~i~~~g~i~~Lv~ll~~~-~~~------~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~ 281 (858)
+. ...++ ..||.|.+.+..+ +++ +.+.+-.+|..++..+.+...++..|+++.+-++-.
T Consensus 95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 64 34443 4589999998765 444 789999999999999999999999999999997643
No 154
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.87 E-value=20 Score=36.28 Aligned_cols=206 Identities=17% Similarity=0.084 Sum_probs=134.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC------------CHHHHHHHHHHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE------------SSAACEAAAGLLR 171 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~------------~~~~~~~a~~aL~ 171 (858)
+..++--+. ++ ..++.++..|..--..-..-...+....|....+++-.-.. ...-..++...|.
T Consensus 28 ~~~~i~~l~-~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ 104 (293)
T KOG3036|consen 28 AYQLILSLV-SP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ 104 (293)
T ss_pred hhhHHHHhh-CC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH
Confidence 444444443 33 35777776665543322221224445556655555443211 2233446888888
Q ss_pred HhhcCchhHHHHHhcCcHHHHHHHhcCCC---CCHHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHH
Q 003008 172 SISSINVYRDLVAECGAIEEITGLLTRPS---LTSEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKV 246 (858)
Q Consensus 172 nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~ 246 (858)
.++.+++.|..+.++..---+-.+|...+ -....+..+++++..|-.+++ .-..+...+.+|..++.+..|++..
T Consensus 105 cvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelS 184 (293)
T KOG3036|consen 105 CVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELS 184 (293)
T ss_pred HHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHH
Confidence 88999999999999876555555665432 145678889999999986553 3455568899999999999999999
Q ss_pred HHHHHHHHHHHcCCcCchHHHHh--------CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHc
Q 003008 247 KEAAGGVLANLALSKSNHNILVE--------AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEE 314 (858)
Q Consensus 247 ~~~a~~~L~nL~~~~~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~ 314 (858)
+.-|+.++..+-.++.+-.-+.+ +-.+..+|..+.+. .+..+-.++.++..+|+.++..|..+..+
T Consensus 185 KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~--ps~RllKhviRcYlrLsdnprar~aL~~c 258 (293)
T KOG3036|consen 185 KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSM--PSPRLLKHVIRCYLRLSDNPRARAALRSC 258 (293)
T ss_pred HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhcCCHHHHHHHHhh
Confidence 99999999999877765432221 12345555544332 25667889999999999999877766443
No 155
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.68 E-value=2.2 Score=49.19 Aligned_cols=152 Identities=14% Similarity=0.049 Sum_probs=94.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHh-hcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHc
Q 003008 427 LVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKL-LDHSSDAVRLATTHALERLSV-SRGVCQIMEAE 503 (858)
Q Consensus 427 Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~L-L~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~ 503 (858)
+-+++.+.|+-+|....-+++. -+++.. .++|..|++. .++.+++||++|+.+|+-++. +++
T Consensus 524 I~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-------- 588 (929)
T KOG2062|consen 524 IKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-------- 588 (929)
T ss_pred HHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh--------
Confidence 3466777888888877777766 233322 4678888887 677889999999999999887 554
Q ss_pred CChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh-hcccc
Q 003008 504 GVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA-VSETT 581 (858)
Q Consensus 504 g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L-~~~~~ 581 (858)
.++..+.+|. .+.++.+|.-++.+|.-.|... ..+ ..+..|-.+++++..-|+..|+ ++.-+ ++..+
T Consensus 589 -~~~s~V~lLs-es~N~HVRyGaA~ALGIaCAGt---G~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 589 -QLPSTVSLLS-ESYNPHVRYGAAMALGIACAGT---GLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred -hchHHHHHHh-hhcChhhhhhHHHHHhhhhcCC---CcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 4677778887 4446899999999999888721 111 1122333334444455777777 55433 23222
Q ss_pred chhhhHhhccchhHHHHhhcCCCHH
Q 003008 582 TSYGKVLDSVFIGRMIGIMKTSYPD 606 (858)
Q Consensus 582 ~~~~~i~~~g~i~~L~~lL~s~~~~ 606 (858)
.-+..+ .+..+.+.+++.+...+
T Consensus 658 ~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 658 QLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred ccCchH--HHHHHHHHHHhhhhhhH
Confidence 111222 23445566666554443
No 156
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.65 E-value=7.7 Score=39.08 Aligned_cols=110 Identities=12% Similarity=0.090 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHH-------h-cC
Q 003008 116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVA-------E-CG 187 (858)
Q Consensus 116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~-------~-~g 187 (858)
....|..++.+++.+...++..+-..+-..++||..++.+..+++..+..|..++..+-.++..-.-+- . .-
T Consensus 138 fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~ 217 (293)
T KOG3036|consen 138 FEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVAL 217 (293)
T ss_pred hHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHH
Confidence 346788899999988865553333344479999999999999999999999999999877664322211 1 12
Q ss_pred cHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008 188 AIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA 227 (858)
Q Consensus 188 ~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 227 (858)
.+..++. +.+.+ ++...+++.++..+||.++..|..+.
T Consensus 218 ~L~kmv~~l~~~p--s~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 218 VLGKMVFQLVSMP--SPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3344444 55555 89999999999999999998877775
No 157
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.60 E-value=3.6 Score=48.31 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHHcCCcccccccc
Q 003008 290 IRKEARNALIELAKDDYYRILIIEEGLVPVPMVGA 324 (858)
Q Consensus 290 ~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~l 324 (858)
+.-.+...|+.|+.+..-....++.|||.. |..+
T Consensus 369 l~~~~~k~~~~l~~h~kfa~~fv~~~gi~k-ll~v 402 (1516)
T KOG1832|consen 369 LLPDVMKLICALAAHRKFAAMFVERRGILK-LLAV 402 (1516)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHhhhhHH-HhcC
Confidence 445678888888888888899999999995 7764
No 158
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.37 E-value=11 Score=40.88 Aligned_cols=164 Identities=10% Similarity=0.062 Sum_probs=103.8
Q ss_pred HHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Chh-----HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHH
Q 003008 459 FKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRG-----VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR 532 (858)
Q Consensus 459 l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~-----~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~ 532 (858)
+...+.+..|+..|..-+-+.|..++....++-. ... ....+.+. .|.++..|-.+.+.+++--.+...|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHHHH
Confidence 4457899999999999899999999999999976 222 23334322 233333332233334455556666666
Q ss_pred hcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc-ccchhhhHhhc---cchhHHHHhhcCCCHHH
Q 003008 533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE-TTTSYGKVLDS---VFIGRMIGIMKTSYPDL 607 (858)
Q Consensus 533 l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~-~~~~~~~i~~~---g~i~~L~~lL~s~~~~v 607 (858)
+.. .......+.....+..+.+....++=++...|. .+..+... ...- ...... ..+.....||.++|-..
T Consensus 150 c~k---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~-a~fl~~n~d~ff~~~~~Ll~s~NYvt 225 (335)
T PF08569_consen 150 CIK---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLV-AEFLSNNYDRFFQKYNKLLESSNYVT 225 (335)
T ss_dssp HTT---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHH-HHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred HHh---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHccCCCeEe
Confidence 665 333333455555666788888888888888887 66665432 2222 233222 34567788899999999
Q ss_pred HHHHHHHHHHhhcCCcchHHH
Q 003008 608 QRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 608 ~~~a~~~L~~l~~~~~~~~~~ 628 (858)
++.++..|+.+..+..+...+
T Consensus 226 krqslkLL~ellldr~n~~vm 246 (335)
T PF08569_consen 226 KRQSLKLLGELLLDRSNFNVM 246 (335)
T ss_dssp HHHHHHHHHHHHHSGGGHHHH
T ss_pred ehhhHHHHHHHHHchhHHHHH
Confidence 999999998887766655544
No 159
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.25 E-value=1.8 Score=50.54 Aligned_cols=195 Identities=14% Similarity=0.084 Sum_probs=126.6
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHH-HhcCChhhHHHHHHcCcHHHHHHhhcCCcH-HHHHHHHHHHHHhhc-
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIA-DISINEHMRMLFKEAGAIKYLVKLLDHSSD-AVRLATTHALERLSV- 492 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~-~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~-~v~~~a~~aL~~Ls~- 492 (858)
......|+...|+.|..-..+..+.....+|. .+....+ + ....++++..+++.... .-...+..++.||++
T Consensus 498 ~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~ 572 (748)
T KOG4151|consen 498 AKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-R----SYEVVKPLDSALHNDEKGLENFEALEALTNLASI 572 (748)
T ss_pred CccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-c----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCc
Confidence 34555678888888877777777777777777 2221100 0 13356666666654432 234678899999998
Q ss_pred ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc-CcCcHHHHHhhcCCChhHHHHHH
Q 003008 493 SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP-VNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 493 ~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~-~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
+...|+.+.+.-+++.+-.++. ++.+..|..++.++.||.-. +......+++ ..+++....++...+......++
T Consensus 573 s~s~r~~i~ke~~~~~ie~~~~--ee~~~lqraa~e~~~NLl~~--~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a 648 (748)
T KOG4151|consen 573 SESDRQKILKEKALGKIEELMT--EENPALQRAALESIINLLWS--PLLYERSIVEYKDRLKLWNLNLEVADEKFELAGA 648 (748)
T ss_pred chhhHHHHHHHhcchhhHHHhh--cccHHHHHHHHHHHHHHHhh--HHHHHHHhhccccCchHHHHHHHhhhhHHhhhcc
Confidence 6777888999988888777776 44488899999999999862 2333344555 45666666666655555555555
Q ss_pred -HHHHhhccccchhh-hHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 572 -VIEAAVSETTTSYG-KVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 572 -~l~~L~~~~~~~~~-~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
++..+.....+.|. ...-..+...++.++.+++.++|...+....|+.
T Consensus 649 ~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 649 GALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF 698 (748)
T ss_pred ccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH
Confidence 43333333333223 2233466778889999999999999888777753
No 160
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.19 E-value=6.2 Score=44.19 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=111.3
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc--cHHHHHHHHHHHHHhcCCCcccc
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI--SESLMEKTLDILGRILDPSKEMK 541 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~--~~~~~~~a~~~L~~l~~~~~~~~ 541 (858)
....+...+.+++..-+..+..-|..++.+......+.+..++..|..++.+... ..++......+++.+...+.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv--- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV--- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce---
Confidence 3566778888888888888999999999999999999999999999999986553 34555555666666655322
Q ss_pred cccccccCcCcHHHHHhhcC--CChhHHHHHH-HHHHhhcccc-chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008 542 SKFYDIPVNGSEKGLDAAES--LDPSIELTGN-VIEAAVSETT-TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF 617 (858)
Q Consensus 542 ~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a~-~l~~L~~~~~-~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~ 617 (858)
..+...+..++.....+.+- .+..+...|+ .+.++..... .+ +.+.+.--+..|+..++.++..++.+|...+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~-~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLR-QLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHH-HHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22223333445444455432 3455666677 6777765444 45 778888889999999999999999999988888
Q ss_pred hhcCC
Q 003008 618 ITIID 622 (858)
Q Consensus 618 l~~~~ 622 (858)
+....
T Consensus 240 l~~~a 244 (713)
T KOG2999|consen 240 LFRKA 244 (713)
T ss_pred HHhhC
Confidence 86543
No 161
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=88.26 E-value=1.9 Score=34.95 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCC
Q 003008 163 CEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD 230 (858)
Q Consensus 163 ~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g 230 (858)
...|+|++++++..+..-..+.+.+.++.++++....+ ...+|--|..+|.-++.+.+....+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 34699999999998877777778899999999988753 67888889999999999998888777665
No 162
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.21 E-value=21 Score=42.47 Aligned_cols=158 Identities=11% Similarity=0.114 Sum_probs=93.6
Q ss_pred HHHHcCcHHHHHHhhcCC--------cHHHHHHHHHHHHHhhcChhHHHHHHHc--------CChHHHHHhhc-C-CCcc
Q 003008 458 LFKEAGAIKYLVKLLDHS--------SDAVRLATTHALERLSVSRGVCQIMEAE--------GVVHPLVNTLK-N-LDIS 519 (858)
Q Consensus 458 ~l~~~g~i~~Lv~LL~~~--------~~~v~~~a~~aL~~Ls~~~~~~~~l~~~--------g~i~~Li~lL~-~-~~~~ 519 (858)
-+...+++..++.+..-+ -.+..+.|...|..+..-|+.+..+..+ .||..|++.-. . ...+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 355567777777776532 2355566677777777777777766543 25555544322 1 2226
Q ss_pred HHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHHHHH---H-HHHHhhccccchhhhHhhccch
Q 003008 520 ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIELTG---N-VIEAAVSETTTSYGKVLDSVFI 593 (858)
Q Consensus 520 ~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~~~a---~-~l~~L~~~~~~~~~~i~~~g~i 593 (858)
++++..|..+|-|+..+ ++.++ +..+.-..+ .++.....+ . .|.+-. .+.. ..++...||
T Consensus 676 pei~~~AL~vIincVc~--pp~~r---------~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l--~~mw-~~Vr~ndGI 741 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCP--PPTTR---------PSTIVAVGSQSGDRRIFLGAGTKSAKLEQVL--RQMW-EAVRGNDGI 741 (1516)
T ss_pred HHHHHHHHhhhheeecC--CCCcc---------hhhhhhccccCCCccccccCCCchHHHHHHH--HHHH-HHHhcCccH
Confidence 89999999999998763 22222 222222222 222211110 0 111111 1122 556778999
Q ss_pred hHHHHhhcCCCH-----HHHHHHHHHHHHhhcCCcchHHHH
Q 003008 594 GRMIGIMKTSYP-----DLQRKAASILEFITIIDPSMDTII 629 (858)
Q Consensus 594 ~~L~~lL~s~~~-----~v~~~a~~~L~~l~~~~~~~~~~~ 629 (858)
..|+.||+-.+| -++..|+.+|..|+.++..+..+.
T Consensus 742 kiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIlt 782 (1516)
T KOG1832|consen 742 KILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILT 782 (1516)
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 999999986544 489999999999999888776653
No 163
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=88.03 E-value=5.6 Score=42.56 Aligned_cols=170 Identities=17% Similarity=0.149 Sum_probs=109.0
Q ss_pred CcHHHHH-HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC--ch
Q 003008 102 SYVALFV-QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI--NV 178 (858)
Q Consensus 102 g~i~~lv-~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~--~~ 178 (858)
+.+..|+ .-++ +.|+.+|..++++|+-.+.-+... ....++.+...++.++++++..|+.++..+... .+
T Consensus 26 ~ll~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKEL------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 4455555 4666 788899999999999888765532 134567888888888999999999999988542 22
Q ss_pred hHHH-------HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC----CHHHH
Q 003008 179 YRDL-------VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE----NMKVK 247 (858)
Q Consensus 179 ~~~~-------i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~ 247 (858)
.-.. ......+..+.+.+.+. +++++..++..++.|-..+.... ....+..|+-+.-++ +..++
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH
Confidence 1111 22245677888889887 99999999999998764433221 112233443333222 34555
Q ss_pred HHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC
Q 003008 248 EAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN 283 (858)
Q Consensus 248 ~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~ 283 (858)
..-...+-..+..............++.+-.+.+..
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 555555555565554334444556777777777654
No 164
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=87.89 E-value=64 Score=39.22 Aligned_cols=180 Identities=18% Similarity=0.216 Sum_probs=104.9
Q ss_pred HHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhc----CCC--CCHHHHHHH
Q 003008 141 IMQFSGCINLTVNLLRSE-----SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLT----RPS--LTSEVKEQS 209 (858)
Q Consensus 141 ii~~~g~i~~Li~lL~~~-----~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~----~~~--~~~~~~~~a 209 (858)
++.+.|++..++.++.+- +.+.....+..|...++-+.||+.+.+.|+++.|+..++ ... ..+.+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 455899999999999753 345555677777777888899999999999999988664 320 014555554
Q ss_pred HHHHHHhccC---cchHHH--HHhCC--------CHHHHHHHHccC----CHHHHHHHHHHHHHHcCCcCchH-HHHhCC
Q 003008 210 MCTLWNLSVD---KKHRLK--IANTD--------ILPLLIKSLEDE----NMKVKEAAGGVLANLALSKSNHN-ILVEAG 271 (858)
Q Consensus 210 ~~~L~nLs~~---~~~~~~--i~~~g--------~i~~Lv~ll~~~----~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g 271 (858)
+.++--|... ...... ..... .+..|++.+.++ ++.+....+++|-+|+++...+. .+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 4444443211 111100 01111 255666666554 68899999999999999876554 33331
Q ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-------hhhHHHHHHcCCcccccccc
Q 003008 272 VIPKLAMLLKANVEGSKVIRKEARNALIELAKD-------DYYRILIIEEGLVPVPMVGA 324 (858)
Q Consensus 272 ~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-------~~~~~~i~~~g~v~~~Lv~l 324 (858)
..+.+.+=+-.....+. -...+..++.++.. ..-|..+++.|.+.. .++.
T Consensus 271 -F~p~l~f~~~D~~~~~~-~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~-a~~Y 327 (802)
T PF13764_consen 271 -FKPYLDFDKFDEEHSPD-EQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQD-AIDY 327 (802)
T ss_pred -HHHhcChhhcccccCch-HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHH-HHHH
Confidence 12222211111111111 12335555555542 244677888887774 6654
No 165
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=3.6 Score=46.01 Aligned_cols=125 Identities=13% Similarity=0.037 Sum_probs=86.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHh-hcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcC
Q 003008 427 LVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKL-LDHSSDAVRLATTHALERLSVSRGVCQIMEAEG 504 (858)
Q Consensus 427 Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~L-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g 504 (858)
+-+|+.+.|+..+...+-+++. -+++.. .|+|..|++. .++.+++||++|+.||+-++..+ ..
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--------~~ 585 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--------RD 585 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecC--------cc
Confidence 4467778888888877777766 233222 5788888887 67888999999999999988732 23
Q ss_pred ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008 505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA 576 (858)
Q Consensus 505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L 576 (858)
.++..+++|.. +.+..++...+.+|.-.|....+ .-.+..|-.|+.+.+.-|+..|+ ++.-+
T Consensus 586 ~lv~tvelLs~-shN~hVR~g~AvaLGiacag~G~---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 586 LLVGTVELLSE-SHNFHVRAGVAVALGIACAGTGD---------KVATDILEALMYDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred hhhHHHHHhhh-ccchhhhhhhHHHhhhhhcCCcc---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 67777788874 34578888888888877762211 11345566667777777788777 55443
No 166
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=87.43 E-value=6.7 Score=40.40 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHH
Q 003008 162 ACEAAAGLLRSISS-INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSL 239 (858)
Q Consensus 162 ~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll 239 (858)
....|+..|.-++- +++.|.......++..++.+|... ..+.++..++.+|..+- .++.|...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~-~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS-NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC-CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34557788888876 557899999999999999999553 26788888888887765 6678888888999999999999
Q ss_pred ccC--CHHHHHHHHHHHHHH
Q 003008 240 EDE--NMKVKEAAGGVLANL 257 (858)
Q Consensus 240 ~~~--~~~~~~~a~~~L~nL 257 (858)
++. +.+++..+...|.-.
T Consensus 186 k~~~~~~~~r~K~~EFL~fy 205 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFY 205 (257)
T ss_pred ccccccHHHhHHHHHHHHHH
Confidence 877 667777777766544
No 167
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.81 E-value=14 Score=40.75 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=45.1
Q ss_pred ccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhh-cCChHHHHHHHHHHHhhhcCcc
Q 003008 756 KSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIE-EGSNRAVEAGLAILYNLSMDSE 821 (858)
Q Consensus 756 ~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~nL~~~~~ 821 (858)
-..+..||-++|-|+.||+.....+-...=+.....+.|+.++. ..|.+||..|+.+|..-...+.
T Consensus 540 ~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 540 TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 46678899999999999987654311111122333466677775 4688999999999977765543
No 168
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=34 Score=38.20 Aligned_cols=148 Identities=11% Similarity=0.039 Sum_probs=83.6
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008 466 KYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF 544 (858)
Q Consensus 466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 544 (858)
..|..-.++++..+|..|+..|+|++.. |+-+... ..-.+..++.-|-++.. .+|+-.+..+|..+.. ......
T Consensus 261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~---~~~~~~ 335 (533)
T KOG2032|consen 261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLE---KASNDD 335 (533)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHH---hhhhcc
Confidence 3344445567789999999999999984 3322222 22245556655554443 7788888888877765 111110
Q ss_pred -ccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchh-hhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008 545 -YDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSY-GKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEFI 618 (858)
Q Consensus 545 -~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~-~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l 618 (858)
.-+..+....+..+..+.+++.+.++. ....|..-..... ..+.+ .+...+++--+.++++.+-..|-..+..+
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTC 414 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhc
Confidence 011123344566778888999999888 5555542111110 12221 12334555556788887766555554443
No 169
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.99 E-value=8.9 Score=44.38 Aligned_cols=105 Identities=18% Similarity=0.042 Sum_probs=74.4
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
.+..++.-..+++..|+..+|..|..+..+.......+-.+..+.|..-+.+..+.||.+|+.||..+-.++..- +
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e 161 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----E 161 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----c
Confidence 455566667889999999999999997764443333444566777777777888999999999999997522110 2
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHH
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGR 532 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~ 532 (858)
..++..+..+++ .+.++++++.+..++.+
T Consensus 162 ~~v~n~l~~liq-nDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 162 CPVVNLLKDLIQ-NDPSDEVRRAALSNISV 190 (892)
T ss_pred ccHHHHHHHHHh-cCCcHHHHHHHHHhhcc
Confidence 235667777777 55568999887665543
No 170
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.77 E-value=2.8 Score=40.08 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=75.2
Q ss_pred HHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHH-HcCcHHHHHHhhc--CCcHHHHHHHHHHHHHhhcChhHHHHHHHcC
Q 003008 429 LILGLEDERAIARAAESIAD-ISINEHMRMLFK-EAGAIKYLVKLLD--HSSDAVRLATTHALERLSVSRGVCQIMEAEG 504 (858)
Q Consensus 429 ~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~-~~g~i~~Lv~LL~--~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g 504 (858)
.++..++.+-...+..++.. +-..++....++ ..|.++.+..+.. .++..++..++.+|..-+.+..+|..+.+ .
T Consensus 50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~ 128 (157)
T PF11701_consen 50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-N 128 (157)
T ss_dssp HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-H
T ss_pred HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-H
Confidence 33444444456677778877 446677666666 6888999999998 77899999999999888878887777766 4
Q ss_pred ChHHHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008 505 VVHPLVNTLKNLDISESLMEKTLDILGRI 533 (858)
Q Consensus 505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l 533 (858)
+++.|..+++.++++..++..|+.+|..+
T Consensus 129 ~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 129 YVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 78999999974443333788888887653
No 171
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.52 E-value=1.1 Score=48.86 Aligned_cols=180 Identities=22% Similarity=0.103 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc----CchhHHHHHh--cC-cHHH
Q 003008 119 DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS----INVYRDLVAE--CG-AIEE 191 (858)
Q Consensus 119 ~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~----~~~~~~~i~~--~g-~i~~ 191 (858)
++..|++++.-+..++....+.+. -.++...+...+.+..-..|+.++|++.||+. +-++-+...+ .| .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~f-v~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIF-VADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHH-HHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence 455677777777777766555555 36777788888888888889999999999964 1122221111 11 1333
Q ss_pred HHHHhc-CCCCCHHHHHHHHHHHHHhccCc----chHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHcCCcCchH
Q 003008 192 ITGLLT-RPSLTSEVKEQSMCTLWNLSVDK----KHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLALSKSNHN 265 (858)
Q Consensus 192 Lv~lL~-~~~~~~~~~~~a~~~L~nLs~~~----~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~nL~~~~~~~~ 265 (858)
+.+... ..-++..++..+.++|+|+..-- +.-......|.+..+.... -.+...++=+++-++.||.+++..+.
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 333211 11135678899999999987321 1111112244444443332 23366799999999999999876543
Q ss_pred H-HHhC-CCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008 266 I-LVEA-GVIPKLAMLLKANVEGSKVIRKEARNALIEL 301 (858)
Q Consensus 266 ~-i~~~-g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl 301 (858)
+ ..-+ .+.+.|..++.+..+ .+ +|..|+.+|.--
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~N-FK-VRi~AA~aL~vp 601 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKN-FK-VRIRAAAALSVP 601 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhcc-ce-EeehhhhhhcCC
Confidence 2 2222 246777777765432 22 555666665433
No 172
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=85.40 E-value=5.3 Score=40.89 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-----HHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHH
Q 003008 439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-----DAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVN 511 (858)
Q Consensus 439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-----~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~ 511 (858)
..+|...+..++.+++.|..+.++...-.|..+|+..+ +.+|-.+.+.++.|.+ +++....+.+.+.+|..+.
T Consensus 67 VcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 67 VCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 34555555557889999999999999888888886543 5688899999999998 6788889999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc--------CcCcHHHH-HhhcCCChhHHHHHH-HHHHhhcccc
Q 003008 512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP--------VNGSEKGL-DAAESLDPSIELTGN-VIEAAVSETT 581 (858)
Q Consensus 512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~--------~~~i~~Li-~ll~s~d~~v~~~a~-~l~~L~~~~~ 581 (858)
.+..++ +..|..|+-++..+.. +...-.++.. ...+...+ .+...+++.+.+..+ |...|+.+..
T Consensus 147 ~me~Gs--elSKtvAtfIlqKIL~---dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr 221 (262)
T PF04078_consen 147 IMEFGS--ELSKTVATFILQKILL---DDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR 221 (262)
T ss_dssp HHHHS---HHHHHHHHHHHHHHHH---SHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred HHHhcc--HHHHHHHHHHHHHHHc---chhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence 998665 6666677777666544 1110000000 11222222 334456677777777 7777777777
Q ss_pred chhhhHh
Q 003008 582 TSYGKVL 588 (858)
Q Consensus 582 ~~~~~i~ 588 (858)
.+ ..+.
T Consensus 222 ar-~aL~ 227 (262)
T PF04078_consen 222 AR-EALR 227 (262)
T ss_dssp HH-HHHH
T ss_pred HH-HHHH
Confidence 66 5554
No 173
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.08 E-value=3.8 Score=39.09 Aligned_cols=144 Identities=18% Similarity=0.155 Sum_probs=90.1
Q ss_pred HHHHHHHHc--cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHH
Q 003008 148 INLTVNLLR--SESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRL 224 (858)
Q Consensus 148 i~~Li~lL~--~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~ 224 (858)
++.++..|. ...+++|..+.-++..+- +..+....+. .-+.+-.++..+ +.+....+..++..|- ..++...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~~-~~~~i~~~~~~~--~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKEK-ISDFIESLLDEG--EMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHCCH--HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHHH-HHHHHHHHHccc--cchhHHHHHHHHHHHhCCCHHHHH
Confidence 344555554 346677877877777762 3233333221 123333355554 3335555677777764 4455444
Q ss_pred HHH-hCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHH-HHHHHHHHHH
Q 003008 225 KIA-NTDILPLLIKSLE--DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKV-IRKEARNALI 299 (858)
Q Consensus 225 ~i~-~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-~~~~a~~aL~ 299 (858)
.+. ..|.++.++.++. ..+..++..++++|..-|.+..+|..+.+ .++++|-++++...+ +. ++..|+-+|+
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~--~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKD--DSEIRVLAAVGLC 155 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC---HH-CHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccc--hHHHHHHHHHHHh
Confidence 444 8899999999998 67888999999999888888888877776 557899999865432 22 4455555554
No 174
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=84.68 E-value=50 Score=36.53 Aligned_cols=96 Identities=16% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCHHHHHHHHccC---CHHHHHHHHHHHHHHcCCcC-chHHHHhCCCHHHHHHHHc-cCCCCCHHHHHHHHHHHHHHhc
Q 003008 229 TDILPLLIKSLEDE---NMKVKEAAGGVLANLALSKS-NHNILVEAGVIPKLAMLLK-ANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 229 ~g~i~~Lv~ll~~~---~~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
...+..|-..++.. .+.+...|+.++..+-.++. +-..+.++|.++.+++.+. .+...+..+-...-.+|..+|-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 33455566666655 57899999999999988754 4447888999999999887 5554455566677788999999
Q ss_pred ChhhHHHHHHcCCccccccccc
Q 003008 304 DDYYRILIIEEGLVPVPMVGAD 325 (858)
Q Consensus 304 ~~~~~~~i~~~g~v~~~Lv~ll 325 (858)
|....+.+.+.+.+.. +++++
T Consensus 185 N~~Gl~~~~~~~~l~~-~f~if 205 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDK-LFEIF 205 (379)
T ss_pred CHHHHHHHHhcChHHH-HHHHh
Confidence 9999999999999995 88874
No 175
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.01 E-value=5 Score=47.07 Aligned_cols=174 Identities=16% Similarity=0.113 Sum_probs=120.4
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YR 180 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~ 180 (858)
..++.+.+.+..+....-...++.++.|+++.+++.+.+++ +.-+++.+-.++..+++..+..++..+.||..++. +.
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~-ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e 619 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKIL-KEKALGKIEELMTEENPALQRAALESIINLLWSPLLYE 619 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHH-HHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHH
Confidence 34455555554122223346789999999998887777877 46666777777888899999999999999998875 77
Q ss_pred HHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHH-HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 181 DLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRL-KIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 181 ~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
..+++ ...++.....+... +..+...+++++.-+.... .++. ......+...++.++.+++.+++-..+....|+
T Consensus 620 ~si~e~~~~l~~w~~~~e~~--~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 620 RSIVEYKDRLKLWNLNLEVA--DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred HHhhccccCchHHHHHHHhh--hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 77777 56677777777665 7778888888888555443 3444 333566788899999999999998888888875
Q ss_pred cCCc-CchHHHHhCCCHHHHHH
Q 003008 258 ALSK-SNHNILVEAGVIPKLAM 278 (858)
Q Consensus 258 ~~~~-~~~~~i~~~g~i~~Lv~ 278 (858)
.... +....+.+...++.+..
T Consensus 698 ~~~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 698 FEALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred HHHHHHHHHHhccchHHHHHHH
Confidence 4332 22223444444444443
No 176
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=83.92 E-value=68 Score=35.32 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=59.5
Q ss_pred HHHHHHhhc-CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHH-hcCCCccccc
Q 003008 465 IKYLVKLLD-HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGR-ILDPSKEMKS 542 (858)
Q Consensus 465 i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~-l~~~~~~~~~ 542 (858)
|..+..=+. +....+|+.++.-|+.-+.+++.|..+..+|.+..++..+.+..+++ .-..++.++.. ++. +...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~-~~~l~~a~i~~~l~~---d~~~ 98 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDD-ILALATAAILYVLSR---DGLN 98 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchH-HHHHHHHHHHHHHcc---CCcc
Confidence 555555555 34578899998888888889999999999999999999997544333 44444445444 443 2222
Q ss_pred ccccccCcCcHHHHHhhc
Q 003008 543 KFYDIPVNGSEKGLDAAE 560 (858)
Q Consensus 543 ~~~i~~~~~i~~Li~ll~ 560 (858)
...+........++.++.
T Consensus 99 ~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhhchhHHHHHHHHhc
Confidence 222223334445567766
No 177
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.71 E-value=2.7 Score=42.21 Aligned_cols=80 Identities=21% Similarity=0.183 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHhcCc-------HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHhCCCH
Q 003008 162 ACEAAAGLLRSISSINVYRDLVAECGA-------IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIANTDIL 232 (858)
Q Consensus 162 ~~~~a~~aL~nLs~~~~~~~~i~~~g~-------i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i 232 (858)
-|+.|+.+|+.|+..+.|.+.+...+- +..|++++... +++..++.|..+|.||+..++. +..-.+.++|
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~-e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMR-EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 477799999999998888887766553 45566677665 4889999999999999977754 3444488999
Q ss_pred HHHHHHHccC
Q 003008 233 PLLIKSLEDE 242 (858)
Q Consensus 233 ~~Lv~ll~~~ 242 (858)
..|+..+...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998665
No 178
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.66 E-value=73 Score=34.82 Aligned_cols=142 Identities=19% Similarity=0.084 Sum_probs=81.4
Q ss_pred chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc----------cCCHHH
Q 003008 177 NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE----------DENMKV 246 (858)
Q Consensus 177 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~----------~~~~~~ 246 (858)
.++|..+. ..+++.|..+. -+..+..++.++.-||.+...-..+....-+..|+.+-+ ..+..+
T Consensus 40 ~d~r~eL~-----e~i~~Vle~~~-p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~v 113 (532)
T KOG4464|consen 40 SDDRKELG-----ERIFEVLENGE-PLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHV 113 (532)
T ss_pred hhhHHHHH-----HHHHHHHhcCC-CchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHH
Confidence 34455543 45666666651 234556678888888876554333332222344444421 124578
Q ss_pred HHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCC--CCHHHHHHHHHHHHHHhc-ChhhHHH-HHHcCCccccc
Q 003008 247 KEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVE--GSKVIRKEARNALIELAK-DDYYRIL-IIEEGLVPVPM 321 (858)
Q Consensus 247 ~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~~a~~aL~nl~~-~~~~~~~-i~~~g~v~~~L 321 (858)
...+.++|.|+..+. ..|....+......+.+.+...-+ ....++-.=.+.|.-+.. .++.|.+ +.+.+|++ ++
T Consensus 114 i~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~-~l 192 (532)
T KOG4464|consen 114 IMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLE-LL 192 (532)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccH-HH
Confidence 899999999999875 455566666666566654422111 011123344556666665 5566655 57789999 58
Q ss_pred cccc
Q 003008 322 VGAD 325 (858)
Q Consensus 322 v~ll 325 (858)
.+++
T Consensus 193 t~~l 196 (532)
T KOG4464|consen 193 TNWL 196 (532)
T ss_pred HHHh
Confidence 8875
No 179
>PRK14707 hypothetical protein; Provisional
Probab=83.54 E-value=1.7e+02 Score=39.06 Aligned_cols=352 Identities=16% Similarity=0.067 Sum_probs=171.8
Q ss_pred cHHHHHHHHcc--CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008 147 CINLTVNLLRS--ESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223 (858)
Q Consensus 147 ~i~~Li~lL~~--~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~~~~~ 223 (858)
-+..+++-.+. ++..++..+...-..++..+..+..+-.. +|..++. +-+.+ +++..+..+...-..|+..+..+
T Consensus 164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~q-~ia~~lNa~sKWp-~~~~c~~aa~~la~~l~~~~~l~ 241 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDAQ-GVATVLNALCKWP-DTPDCGNAVSALAERLADESRLR 241 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccchH-HHHHHHHHHhcCC-CChhHHHHHHHHHHHHcCcHHHH
Confidence 35555555543 35555554444445555655555555334 4555555 44454 35555544443334455555555
Q ss_pred HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHH-HHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLA-NLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~-nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~ 302 (858)
..+-.+|.-..|-.+-+=++......++..|. .++....-+..+-. ..+...+.-|+.-.+ .+..+..+...-..|.
T Consensus 242 ~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd-~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWAD-LPVCAEAAIALAERLA 319 (2710)
T ss_pred HhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCC-chHHHHHHHHHHHHHh
Confidence 55555554445544444455555555555554 33333333333221 112222222221111 2222222322223333
Q ss_pred cChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008 303 KDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM 382 (858)
Q Consensus 303 ~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l 382 (858)
.+++.++. ...+.+..+|-.|+.-+++..+.++++ .+
T Consensus 320 ~d~~l~~~------------------------------------------~~~~~~~~~LNalsKWpd~~~C~~Aa~-~L 356 (2710)
T PRK14707 320 DDPELCKA------------------------------------------LNARGLSTALNALSKWPDNPVCAAAVS-AL 356 (2710)
T ss_pred ccHhhhhc------------------------------------------cchHHHHHHHHHhhcCCCchhHHHHHH-HH
Confidence 33331111 122234445555666665555444432 11
Q ss_pred hhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHH
Q 003008 383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKE 461 (858)
Q Consensus 383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~ 461 (858)
.. +... .+. ..+.+...++-..|-.+-+-++..+-..|+.+|.. +..+++.++.+-.
T Consensus 357 A~--------rl~~-------------d~~-l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~ 414 (2710)
T PRK14707 357 AE--------RLVA-------------DPE-LRKDLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP 414 (2710)
T ss_pred HH--------Hhcc-------------CHh-hhcccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch
Confidence 11 1110 000 01222223344455566677899999999999999 7888888888776
Q ss_pred cCcHHHHHHhhcCCcHHHHHHHHHHHHH-hhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008 462 AGAIKYLVKLLDHSSDAVRLATTHALER-LSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
.|.-..|-.|.+=++..+-..++.+|.. ++.+.+.++.+--.++...|-.+-+ -.+++.....+......|.. +.
T Consensus 415 Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSK-WPd~p~c~~aa~~La~~l~~---~~ 490 (2710)
T PRK14707 415 QGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSK-WPDTPICGQTASALAARLAH---ER 490 (2710)
T ss_pred hhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhc-CCCChhHHHHHHHHHHHhcc---cH
Confidence 6655555556666676666666666654 4557888877766664444444444 33345555544444555665 33
Q ss_pred ccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
.....+.+.+....|-.|-+-+|......++
T Consensus 491 ~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~ 521 (2710)
T PRK14707 491 RLRKALKPQEVVIALHSLSKWPDTPICAEAA 521 (2710)
T ss_pred HHHhhcCHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 3332333333333344444445555444444
No 180
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=82.76 E-value=31 Score=36.80 Aligned_cols=163 Identities=19% Similarity=0.212 Sum_probs=102.8
Q ss_pred CcHHHHH-HHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cch
Q 003008 146 GCINLTV-NLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKH 222 (858)
Q Consensus 146 g~i~~Li-~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~ 222 (858)
+.+..|+ ..+++.++.+|+.++.+|+-.+.-+. .+.. ..++.+...++.+ ++.++..|+.++.-+... .+.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~-~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK---ELAK-EHLPLFLQALQKD--DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh---HHHH-HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCchh
Confidence 5555555 67788999999999999998877543 1111 1367788877666 899999999999987531 111
Q ss_pred HH-------HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHH-HccCCCCCHHHHHHH
Q 003008 223 RL-------KIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAML-LKANVEGSKVIRKEA 294 (858)
Q Consensus 223 ~~-------~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~l-l~~~~~~~~~~~~~a 294 (858)
-. .......++.+.+.+.+.+++++..++..++.|-..+.... ....+..|+-+ +...+.+.+.+++.-
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 11 12234567778888888899999999999999866543322 12333444443 333333334455444
Q ss_pred HHHHHHHhcC-hhhHHHHHHcCCcc
Q 003008 295 RNALIELAKD-DYYRILIIEEGLVP 318 (858)
Q Consensus 295 ~~aL~nl~~~-~~~~~~i~~~g~v~ 318 (858)
.-.+-..|.. +.++ ..+..+.++
T Consensus 177 ~~Ffp~y~~s~~~~Q-~~l~~~f~~ 200 (298)
T PF12719_consen 177 SVFFPVYASSSPENQ-ERLAEAFLP 200 (298)
T ss_pred HHHHHHHHcCCHHHH-HHHHHHHHH
Confidence 4445556664 4454 455555555
No 181
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=82.60 E-value=14 Score=36.34 Aligned_cols=111 Identities=20% Similarity=0.237 Sum_probs=74.9
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHH-hhcCc-hhHHHHHhcCcHHHHHHHhcCCC-------CCHHHHHHHHHHHHHh
Q 003008 146 GCINLTVNLLRSESSAACEAAAGLLRS-ISSIN-VYRDLVAECGAIEEITGLLTRPS-------LTSEVKEQSMCTLWNL 216 (858)
Q Consensus 146 g~i~~Li~lL~~~~~~~~~~a~~aL~n-Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~-------~~~~~~~~a~~~L~nL 216 (858)
.....+++.+.+...... .+..|.. |-..+ ..-..+++.||+..|+++|..-. .+......++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~~--~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSK--ILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HHH--HHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccHH--HHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 345566777766644321 1111211 11222 45666778899999998776321 2457788899999999
Q ss_pred ccCcchHHHHH-hCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 217 SVDKKHRLKIA-NTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 217 s~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
..+..+...+. ..+++..|+..|.+++..++..++..|..+|
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98887766666 6889999999999999999999999998876
No 182
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=11 Score=43.79 Aligned_cols=87 Identities=17% Similarity=0.069 Sum_probs=53.1
Q ss_pred ccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHH
Q 003008 156 RSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLL 235 (858)
Q Consensus 156 ~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~L 235 (858)
++.++++|+.|+.+|+.+...++. ..|..|++|... -|+-++..++.+|+-.|.+..++..+ ..+++|
T Consensus 565 sD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi---~lLepl 632 (929)
T KOG2062|consen 565 SDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAI---NLLEPL 632 (929)
T ss_pred cccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHH---HHHhhh
Confidence 455777777777777776654432 256667766543 27888888888888877777666655 122222
Q ss_pred HHHHccCCHHHHHHHHHHHHHH
Q 003008 236 IKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 236 v~ll~~~~~~~~~~a~~~L~nL 257 (858)
.+.+..-+|.-|+-++.-+
T Consensus 633 ---~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 633 ---TSDPVDFVRQGALIALAMI 651 (929)
T ss_pred ---hcChHHHHHHHHHHHHHHH
Confidence 3333444666666666554
No 183
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.07 E-value=18 Score=40.06 Aligned_cols=128 Identities=9% Similarity=0.122 Sum_probs=91.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccCCc---ccHHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhhcC
Q 003008 107 FVQMLGLDYDPLDREQAVEALWKYSLGGK---KCIDYIMQFSGCINLTVNLLRSE-------SSAACEAAAGLLRSISSI 176 (858)
Q Consensus 107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~---~~~~~ii~~~g~i~~Li~lL~~~-------~~~~~~~a~~aL~nLs~~ 176 (858)
+..+++ ......|..|+....++..+.+ ..++.+. +.-+.+-+-+++++. +.-.+..+...|.-.+..
T Consensus 16 ~~~L~~-~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vf-eAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLK-GKRDEERFAALLLVTKFVKNDDIVALNKKLVF-EAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhc-ccChHHHHHHHHHHHHHhcccchhhhhhhhHH-HHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 667776 4433567777777777766443 1233466 677778888888654 233455577777777777
Q ss_pred ch--hHHHHHhcCcHHHHHHHhcCCCCCHH------HHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHH
Q 003008 177 NV--YRDLVAECGAIEEITGLLTRPSLTSE------VKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL 239 (858)
Q Consensus 177 ~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~------~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll 239 (858)
++ ....|++ .||.|.+.+.... |+. +.+.+-.+|+..+..+.....+...|+++.+.++-
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~-d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y 161 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGI-DTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMY 161 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcC-CCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHH
Confidence 65 4445554 4999999988763 333 78889999999999999999999999999998773
No 184
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=82.04 E-value=5.3 Score=39.28 Aligned_cols=111 Identities=12% Similarity=0.106 Sum_probs=74.2
Q ss_pred CCcHHHHHHHhcCCCCHH-HHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc---------CCHHHHHHHHHHH
Q 003008 101 DSYVALFVQMLGLDYDPL-DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS---------ESSAACEAAAGLL 170 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~-~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~---------~~~~~~~~a~~aL 170 (858)
......+++.|. +.... .....+.+...- .+..=.+.++ +.||+..|+..|.. .+......++.+|
T Consensus 65 ~~~p~~~i~~L~-~~~~~~~~L~~L~v~Lrt--~~~~Wv~~Fl-~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl 140 (187)
T PF06371_consen 65 KSSPEWYIKKLK-SRPSTSKILKSLRVSLRT--NPISWVQEFL-ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL 140 (187)
T ss_dssp CHHHHHHHHHHT-TT--HHHHHHHHHHHHHH--S-HHHHHHH--HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH-ccCccHHHHHHHHHHhcc--CCchHHHHhc-cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence 445566888776 43322 222233222221 1212134566 68999999999843 2456777799999
Q ss_pred HHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003008 171 RSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS 217 (858)
Q Consensus 171 ~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs 217 (858)
+.|..+......+.. .+++..++..|.++ ++.++..++.+|..+|
T Consensus 141 kal~n~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 141 KALMNTKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp HHHTSSHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 999888877777777 88999999999988 9999999999998876
No 185
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.88 E-value=8.2 Score=47.25 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=103.3
Q ss_pred CcHHHHHHhhc----CCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008 463 GAIKYLVKLLD----HSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS 537 (858)
Q Consensus 463 g~i~~Lv~LL~----~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~ 537 (858)
...|.++.+++ ..+++++.+|.-||+.+.. +.+.+.. .+|.|+..+.. +.++.+|.++..+++.++.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimek-sp~p~IRsN~VvalgDlav-- 990 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEK-SPSPRIRSNLVVALGDLAV-- 990 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhc-CCCceeeecchheccchhh--
Confidence 35666777774 4579999999999999976 5554433 57889998873 3347888888888888775
Q ss_pred cccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHH
Q 003008 538 KEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILE 616 (858)
Q Consensus 538 ~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~ 616 (858)
.+.+-. .-.-+.|...|.+++++++++|. .+.+|+.... |.-.|-++-+...+.++++.|...|-..+.
T Consensus 991 -~fpnli----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 991 -RFPNLI----EPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred -hccccc----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 222110 12345677888899999999999 9999876543 223578888999999999999888886666
Q ss_pred HhhcCC
Q 003008 617 FITIID 622 (858)
Q Consensus 617 ~l~~~~ 622 (858)
-|+...
T Consensus 1061 Els~k~ 1066 (1251)
T KOG0414|consen 1061 ELSSKG 1066 (1251)
T ss_pred Hhhhcc
Confidence 665543
No 186
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.52 E-value=7.5 Score=47.56 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=94.1
Q ss_pred cHHHHHHHhC----CCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-Chh
Q 003008 423 GVARLVLILG----LEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-SRG 495 (858)
Q Consensus 423 ~i~~Lv~lL~----~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~~~ 495 (858)
..|-++...+ ..++++|..|.-+|+. ++.+.+.+ ....|.|+..+. ++++.+|.+++.+++-++- .+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4555666663 3689999999999999 55555544 456899999887 8889999999999999986 333
Q ss_pred HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 496 VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 496 ~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
..+. .-+.|..-|++. +..+|+.|...|.+|-..+ .+--.|-+.....++.+++++++--|-
T Consensus 995 lie~-----~T~~Ly~rL~D~--~~~vRkta~lvlshLILnd-------miKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDE--SPSVRKTALLVLSHLILND-------MIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccch-----hhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhh-------hhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence 2111 234566667744 4999999999999987622 233356677788888888888766554
No 187
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=80.47 E-value=40 Score=36.57 Aligned_cols=200 Identities=16% Similarity=0.205 Sum_probs=139.0
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCccc-----HHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKC-----IDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRS 172 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~-----~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~n 172 (858)
...+.+..|+..|. .-+.+.|..++....++-....+. .+.+... ...+..|+.--. ++++...+-..|+.
T Consensus 73 ~~~dll~~Li~~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe 149 (335)
T PF08569_consen 73 YRSDLLYLLIRNLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE 149 (335)
T ss_dssp HHHTHHHHHHHTGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence 45678888888886 667788888888877776543222 2233322 223333333222 56677778888999
Q ss_pred hhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHh-ccCcchHHHHHhC---CCHHHHHHHHccCCHHHHH
Q 003008 173 ISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNL-SVDKKHRLKIANT---DILPLLIKSLEDENMKVKE 248 (858)
Q Consensus 173 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~ 248 (858)
....+...+.+.....+..+.+....+ +=++.-.|..++..+ ..++..-...... ..+....++|.+++--.+.
T Consensus 150 c~k~e~l~~~iL~~~~f~~ff~~~~~~--~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 150 CIKHESLAKIILYSECFWKFFKYVQLP--NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp HTTSHHHHHHHHTSGGGGGHHHHTTSS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred HHhhHHHHHHHhCcHHHHHHHHHhcCC--ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 998888788888888899999999988 888998999999885 5666554444433 3455778889999999999
Q ss_pred HHHHHHHHHcCCcCchHHH---Hh-CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh
Q 003008 249 AAGGVLANLALSKSNHNIL---VE-AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY 306 (858)
Q Consensus 249 ~a~~~L~nL~~~~~~~~~i---~~-~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~ 306 (858)
+++..|..|-.+..+...+ +. ..-+..++.+|++. ++.+|-.|-.+.--...+|.
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---SKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHH-SS
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---chhhhHHHHHHHHHHHhCCC
Confidence 9999999999888776643 22 23477777788764 67799999988888877754
No 188
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=80.28 E-value=1.1e+02 Score=34.51 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=57.6
Q ss_pred hhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHh-cCCchHHHHHhhcCChHHHHHHHHHHHhhhcCc
Q 003008 744 LYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVAS-EGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS 820 (858)
Q Consensus 744 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~ 820 (858)
-...+|.|++-.+..+.+.+.....||+++...-+. .. .+-+ ...+|.|++.|+.++.+++..++.+|..+..+.
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~-~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK-SV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH-HH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 345688999888877777999999999998764432 22 2222 345677789999999999999999999988775
No 189
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=80.14 E-value=4.1 Score=46.70 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSIS 174 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs 174 (858)
...++..+++|+. +.|..+|.+|++.|-.++.++.... ..++..|+++|.++++.....+-.+|..|-
T Consensus 57 ~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll 124 (556)
T PF05918_consen 57 QEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHV------SKVADVLVQLLQTDDPVELDAVKNSLMSLL 124 (556)
T ss_dssp HHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-H------HHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHH------hHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4556666777776 6677777777777777776544322 234466677777666655555555555553
No 190
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=79.21 E-value=38 Score=38.32 Aligned_cols=163 Identities=18% Similarity=0.169 Sum_probs=105.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCC--CHHHHHHHHHHHHHhccCcchHHH
Q 003008 148 INLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSL--TSEVKEQSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 148 i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~nLs~~~~~~~~ 225 (858)
...+.+++.+++...+..+..-|..++.+...-..+....++..|..+..++.. ...+...+++++..+-.+.-.-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 456678888998888888989999998888888888888899999999998742 335555666666555322212222
Q ss_pred HHhCCCHHHHHHHHcc--CCHHHHHHHHHHHHHHcCCcCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008 226 IANTDILPLLIKSLED--ENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302 (858)
Q Consensus 226 i~~~g~i~~Lv~ll~~--~~~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~ 302 (858)
.+...+|.....+.+- .+..+...|+..|-++..++... ..+.+.--+..|+..++..+ ..++..|...+-.+.
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n---~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSN---QRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcc---hHHHHHHHHHHHHHH
Confidence 2233344444444422 25567788999999998887644 45666666999999887653 235555554444444
Q ss_pred c--ChhhHHHHHH
Q 003008 303 K--DDYYRILIIE 313 (858)
Q Consensus 303 ~--~~~~~~~i~~ 313 (858)
. .++-|..+.+
T Consensus 242 ~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 242 RKAPDDKRFEMAK 254 (713)
T ss_pred hhCChHHHHHHHH
Confidence 3 2334444444
No 191
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.75 E-value=1.5e+02 Score=35.31 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=37.0
Q ss_pred CchHHHHHhhcCChHHHHHHHHHHHhhhcC-ccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHh
Q 003008 790 GIFPLVKLIEEGSNRAVEAGLAILYNLSMD-SENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLR 854 (858)
Q Consensus 790 ~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~ 854 (858)
-|+.+-+.+--.+.-||.+|..+|.++... +..+.. +.-.|-+.+.+.+.++ ++|=-.|.
T Consensus 467 yir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~s-----I~vllkRc~~D~DdevRdrAtf~l~ 528 (865)
T KOG1078|consen 467 YIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPS-----ILVLLKRCLNDSDDEVRDRATFYLK 528 (865)
T ss_pred hhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcccc-----HHHHHHHHhcCchHHHHHHHHHHHH
Confidence 334444444445677899999999998743 344332 2446667788888887 55544443
No 192
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.71 E-value=18 Score=42.02 Aligned_cols=137 Identities=17% Similarity=0.105 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhc
Q 003008 118 LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLT 197 (858)
Q Consensus 118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~ 197 (858)
.+...+++....+-..+.. ..++ .|.+..+++...+.+..+|.+++..|..++......+.-+-.+....+..-+.
T Consensus 61 RIl~fla~fv~sl~q~d~e--~DlV--~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKE--EDLV--AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHhhhccCch--hhHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh
Confidence 3444555555555443333 2344 57777778888888999999999999999875544444444556777777777
Q ss_pred CCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCchHHH
Q 003008 198 RPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSNHNIL 267 (858)
Q Consensus 198 ~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~i 267 (858)
.. .|.++..|+.+|+.+=.++.+- +..++..+..+++.+ ++++|..+ |.|++.++.....+
T Consensus 137 Dr--ep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaa---LsnI~vdnsTlp~I 198 (892)
T KOG2025|consen 137 DR--EPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAA---LSNISVDNSTLPCI 198 (892)
T ss_pred cc--CchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHH---HHhhccCcccchhH
Confidence 76 8899999999999997543221 112355677777654 88999884 56666555544443
No 193
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=78.70 E-value=1.1e+02 Score=33.58 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhhc-CchhHHH-HHhcC
Q 003008 115 YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES-----SAACEAAAGLLRSISS-INVYRDL-VAECG 187 (858)
Q Consensus 115 ~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~-----~~~~~~a~~aL~nLs~-~~~~~~~-i~~~g 187 (858)
+|..+...++++|+|+..++....+... +...+..+.+.+...- ......=++.|.-|+. ..+.|.. +.+.+
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~-~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~ 187 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFL-ENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELL 187 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHH-hhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4558889999999999998887655555 5677777777664331 1222333445555533 3356655 45599
Q ss_pred cHHHHHHHhcCCC----------CCHHH---HHHHHHHHHHhccC
Q 003008 188 AIEEITGLLTRPS----------LTSEV---KEQSMCTLWNLSVD 219 (858)
Q Consensus 188 ~i~~Lv~lL~~~~----------~~~~~---~~~a~~~L~nLs~~ 219 (858)
|++.+.+++...- .+|+- .-.++.++.|+..+
T Consensus 188 Gl~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 188 GLELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred ccHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeec
Confidence 9999999988641 12222 33466777787654
No 194
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=78.68 E-value=1.7e+02 Score=35.79 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=55.3
Q ss_pred HHHhcCcHHHHHHHhcCCC---CCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc----cCC----HHHHHHH
Q 003008 182 LVAECGAIEEITGLLTRPS---LTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE----DEN----MKVKEAA 250 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~----~~~----~~~~~~a 250 (858)
.+.+.||+..++.++.+-. .........+.+|...+.-+.||..+.+.|+++.|++.+. .+. ..+.+..
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456899999999888642 1234555567777777888999999999999999998874 323 4566666
Q ss_pred HHHHHHHc
Q 003008 251 GGVLANLA 258 (858)
Q Consensus 251 ~~~L~nL~ 258 (858)
+.++..+.
T Consensus 192 L~IiE~ll 199 (802)
T PF13764_consen 192 LEIIESLL 199 (802)
T ss_pred HHHHHHHH
Confidence 66665554
No 195
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.48 E-value=2.1e+02 Score=36.88 Aligned_cols=170 Identities=19% Similarity=0.194 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHc-ccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh---
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKY-SLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY--- 179 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~l-a~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~--- 179 (858)
||+|..+= +++|+.+|... .-++|. ..+..+-+++.. -..+.-|+.-|.+..-.+|+.++-+|..|-...+.
T Consensus 1000 IPrLyRY~-yDP~~~Vq~aM-~sIW~~Li~D~k~~vd~y~--neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQ-YDPDKKVQDAM-TSIWNALITDSKKVVDEYL--NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred hHHHhhhc-cCCcHHHHHHH-HHHHHHhccChHHHHHHHH--HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 34444443 57887776544 455554 443333333332 34566666667777778999999999999776543
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHH---HHHHHHHhc---cCcc--hHHHHHhCCCHHHHHHH-HccCCHHHHHHH
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQ---SMCTLWNLS---VDKK--HRLKIANTDILPLLIKS-LEDENMKVKEAA 250 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~---a~~~L~nLs---~~~~--~~~~i~~~g~i~~Lv~l-l~~~~~~~~~~a 250 (858)
.+.+-+ .-..+.+.+.+- ...+++. ++.+|..|| ++.. .+..-.-...+|.|+.- .-+.-++++..+
T Consensus 1076 ~e~lpe--lw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~s 1151 (1702)
T KOG0915|consen 1076 KEKLPE--LWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFS 1151 (1702)
T ss_pred HHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHH
Confidence 222221 122333333322 3344544 456666665 2222 23333234455555432 114467899999
Q ss_pred HHHHHHHcCCcCchHHHHhCCCHHHHHHHHc
Q 003008 251 GGVLANLALSKSNHNILVEAGVIPKLAMLLK 281 (858)
Q Consensus 251 ~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~ 281 (858)
..++..|++.......=.-...||.|+....
T Consensus 1152 i~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1152 IGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 9999999876443221112235666666654
No 196
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=78.01 E-value=5.9 Score=45.48 Aligned_cols=67 Identities=21% Similarity=0.202 Sum_probs=46.0
Q ss_pred cchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhc
Q 003008 746 EAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSM 818 (858)
Q Consensus 746 ~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~ 818 (858)
.++..++.|..+.+..||.+|+..|-.++.+.+. .+..++ ..|+++|.+.++.....+-.+|..|..
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~-~v~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE-HVSKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T--HHHHH-----HHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH-HHhHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999998876543 454554 789999998887666666666655543
No 197
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=77.92 E-value=1.3e+02 Score=33.96 Aligned_cols=360 Identities=16% Similarity=0.132 Sum_probs=181.8
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCc-Cch-
Q 003008 189 IEEITGLLTRPSLTS-EVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSK-SNH- 264 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~-~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~-~~~- 264 (858)
+|.++..|.+...+. ...+.++.+|..+|.++..-..+.. ..+..|-.....+ +.+.....+.+|.++.... +..
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 467788887762111 6678899999999998876444433 3444444444433 5566777788888775432 222
Q ss_pred ----HHHHhCCCHHHHHHHHccCCCCC----HHHHHHHHHHHHHHhc--ChhhHHHHHHcCCcccccccccc-cccCCcc
Q 003008 265 ----NILVEAGVIPKLAMLLKANVEGS----KVIRKEARNALIELAK--DDYYRILIIEEGLVPVPMVGADA-YKSFRPE 333 (858)
Q Consensus 265 ----~~i~~~g~i~~Lv~ll~~~~~~~----~~~~~~a~~aL~nl~~--~~~~~~~i~~~g~v~~~Lv~ll~-~~~~~~~ 333 (858)
....+...++.+.++.-...... ..+-..+..++..+.. +++.++.+++. ++.++. ..++.+.
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~------~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDE------LYSLFLSPKSFSPF 153 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHH------HHHHHccccccCCC
Confidence 12334447888888654322111 2233344444444444 24444444331 222110 0011000
Q ss_pred CCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccc
Q 003008 334 LHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR 413 (858)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~ 413 (858)
. ......... ......-....++.+..+.
T Consensus 154 ----~--~~~~~~~~~-~~~~~~l~~~il~~l~~~~-------------------------------------------- 182 (415)
T PF12460_consen 154 ----Q--PSSSTISEQ-QSRLVILFSAILCSLRKDV-------------------------------------------- 182 (415)
T ss_pred ----C--ccccccccc-cccHHHHHHHHHHcCCccc--------------------------------------------
Confidence 0 000000000 0000001122222221111
Q ss_pred ccccccccccHHHHHHHh-CCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhh-cCCcHHHHHHHHHHH---
Q 003008 414 QLTLLPWIDGVARLVLIL-GLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLL-DHSSDAVRLATTHAL--- 487 (858)
Q Consensus 414 ~~~~l~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL-~~~~~~v~~~a~~aL--- 487 (858)
.+. .....+..++.+. +..++..+..+++.++.+. +.+... .-...+..+..-+ .......+..+...+
T Consensus 183 ~~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi 257 (415)
T PF12460_consen 183 SLP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWI 257 (415)
T ss_pred Ccc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHH
Confidence 000 0011455555554 4456778888888777744 311110 0012233333333 233344444444333
Q ss_pred -HHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc------cccc----CcCcHHH
Q 003008 488 -ERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF------YDIP----VNGSEKG 555 (858)
Q Consensus 488 -~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~------~i~~----~~~i~~L 555 (858)
..|.. ..+. ....+..|+.++.+ +.+...++.++.-+.....+..++. .++. ...+|.+
T Consensus 258 ~KaLv~R~~~~-----~~~~~~~L~~lL~~----~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L 328 (415)
T PF12460_consen 258 TKALVMRGHPL-----ATELLDKLLELLSS----PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL 328 (415)
T ss_pred HHHHHHcCCch-----HHHHHHHHHHHhCC----hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence 33332 1111 11245667777763 5677788888887776322221111 1111 1346677
Q ss_pred HHhhcCCChhHHHHHH-HHHHhhccccchhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 556 LDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 556 i~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
++.....+.+.+.+-+ ++.++..+-... .+.. ...+|.|++-|..++.+++..++.+|..+..+.
T Consensus 329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP~~--vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 329 LEGFKEADDEIKSNYLTALSHLLKNVPKS--VLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHhhCCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 7777776666777777 888887755432 2222 356889999999999999999999999998776
No 198
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=76.09 E-value=46 Score=39.97 Aligned_cols=180 Identities=16% Similarity=0.073 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHh
Q 003008 117 PLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLL 196 (858)
Q Consensus 117 ~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL 196 (858)
+.++..|+++++..+. .... .-. ..+.+..|+++....+.++....+.+|...+..+.-.....+.-..|....+.
T Consensus 505 ~~~ki~a~~~~~~~~~-~~vl--~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCK-VKVL--LSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLF 580 (1005)
T ss_pred CchhHHHHHHHHhccC-ceec--ccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHH
Confidence 3556666666665552 2211 112 36778888888888888988889999999988776666666777788888865
Q ss_pred cCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCC----HHHHHHHHHHHHHHcCCc-CchHHHHhCC
Q 003008 197 TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDEN----MKVKEAAGGVLANLALSK-SNHNILVEAG 271 (858)
Q Consensus 197 ~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~----~~~~~~a~~~L~nL~~~~-~~~~~i~~~g 271 (858)
-..++||.+...+--++..|+....|...+. .-.||.|+..|..+. ......++..|..+-.+. ..-....-.-
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~ 659 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY 659 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH
Confidence 5545699888888888888876444433333 346999999998775 567777777777665542 2222222235
Q ss_pred CHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 272 VIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 272 ~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
+.|++.+..-+ +++.. .-+.+-.+|..+-.
T Consensus 660 ~FpaVak~tlH-sdD~~-tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 660 AFPAVAKITLH-SDDHE-TLQNATECLRALIS 689 (1005)
T ss_pred HhHHhHhheee-cCChH-HHHhHHHHHHHHHh
Confidence 67888885433 22222 44566677766655
No 199
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.58 E-value=47 Score=34.94 Aligned_cols=143 Identities=19% Similarity=0.173 Sum_probs=86.2
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
++...+..|. +.|+.....++..+..++.....-....+ .-.+..+++-++.....+...|+.++..|...-.+ .
T Consensus 89 al~~~l~~L~-s~dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 89 ALKQALKKLS-SDDWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHhc-hHHHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 3455666776 78888888888888888876543222222 34566667777777777888888888888543211 1
Q ss_pred HHhcCcHHHHHH-HhcCCC-CCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 183 VAECGAIEEITG-LLTRPS-LTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 183 i~~~g~i~~Lv~-lL~~~~-~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
+.+ ....++. |+.... ++.-+++.|-.+|..+-.+-... -.++.|+..+++.++.++..++.+..++.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 111 2333333 333332 23456777777776655433221 23566666777778888888777766553
No 200
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=73.61 E-value=8.7 Score=38.73 Aligned_cols=80 Identities=23% Similarity=0.251 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcccCCcccHHHHHHhcC-------cHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCch--hHHHHHhcC
Q 003008 118 LDREQAVEALWKYSLGGKKCIDYIMQFSG-------CINLTVNLLRS-ESSAACEAAAGLLRSISSINV--YRDLVAECG 187 (858)
Q Consensus 118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g-------~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~--~~~~i~~~g 187 (858)
.-|..|+.+|++++..+.| ++.++ ..+ .+..|+++|.. ++...|+.|+..|.+|+..++ .|..-.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~N-VDliL-aTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENN-VDLIL-ATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccC-cceee-eCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 3588999999999987776 45555 344 35556666644 477889999999999999774 455555689
Q ss_pred cHHHHHHHhcCC
Q 003008 188 AIEEITGLLTRP 199 (858)
Q Consensus 188 ~i~~Lv~lL~~~ 199 (858)
+|..|+.++...
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999999875
No 201
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.35 E-value=18 Score=42.95 Aligned_cols=185 Identities=12% Similarity=0.139 Sum_probs=111.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
....+..+. ++.+.+|-++++.|.++......+ ..++ ..+++...+..|++.++-+-.+|...+..|+.-.
T Consensus 729 ~qeai~sl~-d~qvpik~~gL~~l~~l~e~r~~~-~~~~-~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy------ 799 (982)
T KOG4653|consen 729 LQEAISSLH-DDQVPIKGYGLQMLRHLIEKRKKA-TLIQ-GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY------ 799 (982)
T ss_pred HHHHHHHhc-CCcccchHHHHHHHHHHHHhcchh-hhhh-HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc------
Confidence 344555564 667789999999999999876543 4555 6899999999999999988888888777666531
Q ss_pred HhcCcHHHHHHHhcCCCCC--HHHHHHHHHHHHHhcc--CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 184 AECGAIEEITGLLTRPSLT--SEVKEQSMCTLWNLSV--DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~--~~~~~~a~~~L~nLs~--~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
....+|.+.+.-.+.... ++.+-..-.++.++.. ++ -..... +-.+...+..+++++...|..++..+++|+.
T Consensus 800 -~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 800 -PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQ 876 (982)
T ss_pred -chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHH
Confidence 123567776632222101 1222223344544431 11 000000 1123344555666666678888999998876
Q ss_pred CcCch--HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 260 SKSNH--NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 260 ~~~~~--~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
....+ ..+. .+...++.+.+. +++..+|+.|+..+..+-..
T Consensus 877 ~~a~~vsd~~~--ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 877 LLAFQVSDFFH--EVLQLILSLETT--DGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHhhhhhHHHH--HHHHHHHHHHcc--CCchhhHHHHHHHHHHHHhc
Confidence 43222 1222 245556666544 34666888888887777653
No 202
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=20 Score=40.40 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=62.4
Q ss_pred cHHHHHHH-HccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008 147 CINLTVNL-LRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 147 ~i~~Li~l-L~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~ 225 (858)
++..++.. ..++++++|+.|+-+|+.++..+. ..++..+++|... .++-++...+-+|.-.|.+...+..
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~~a 622 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSES-HNFHVRAGVAVALGIACAGTGDKVA 622 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccHHH
Confidence 34444444 456677888888888887776542 3466677776654 2778888778888777765544433
Q ss_pred HHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 226 IANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 226 i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
+..|-.++...+.-+|..|+-++.-+.
T Consensus 623 ------~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 623 ------TDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred ------HHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 345555566666667777777776654
No 203
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=71.69 E-value=80 Score=34.76 Aligned_cols=93 Identities=20% Similarity=0.189 Sum_probs=60.5
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003008 148 INLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI 226 (858)
Q Consensus 148 i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 226 (858)
+.-++.=+.++ ...+|..++--|+.-+.+++.|..+.+.|.+..+++.+...++++..-..++.+++-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 33444444433 45678788888888888889999999999999999988655434444444444444455544444444
Q ss_pred HhCCCHHHHHHHHc
Q 003008 227 ANTDILPLLIKSLE 240 (858)
Q Consensus 227 ~~~g~i~~Lv~ll~ 240 (858)
.+.+.+..+++++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 45566666666665
No 204
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=70.92 E-value=1.3e+02 Score=30.82 Aligned_cols=140 Identities=21% Similarity=0.154 Sum_probs=87.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCC-cccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGG-KKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~-~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
+.|+.-+....++..+...+..|..++.+. .. ..-++..|..+...+..+.+..+.+.+..+-..++ |..
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~-------~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVC-------VPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccc-------hhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-
Confidence 444543433778899999999999999866 32 13345667777777777766566677776644322 110
Q ss_pred HhcCcHHHHHHH--hc------CCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHH
Q 003008 184 AECGAIEEITGL--LT------RPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVL 254 (858)
Q Consensus 184 ~~~g~i~~Lv~l--L~------~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L 254 (858)
+.+..++.. ++ .....-+.....+..+..+|....++ -...++.+..++ ++.++.++..++..|
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 233433333 11 11112344455567788887655442 123577888888 677888999999999
Q ss_pred HHHcCC
Q 003008 255 ANLALS 260 (858)
Q Consensus 255 ~nL~~~ 260 (858)
..|+..
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 999843
No 205
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=69.99 E-value=1.5e+02 Score=32.90 Aligned_cols=98 Identities=14% Similarity=0.171 Sum_probs=76.8
Q ss_pred cCcHHHHHHHHccC---CHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHhc-CC-CCCHHHHHHHHHHHHHhcc
Q 003008 145 SGCINLTVNLLRSE---SSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITGLLT-RP-SLTSEVKEQSMCTLWNLSV 218 (858)
Q Consensus 145 ~g~i~~Li~lL~~~---~~~~~~~a~~aL~nLs~~~~-~~~~i~~~g~i~~Lv~lL~-~~-~~~~~~~~~a~~~L~nLs~ 218 (858)
......|..+++.. .+.+--.|+..+..+-.+++ .-..+.+.|.++.+++.+. .+ +-+.++....-.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 34455555556554 56777789999999988775 6677788999999999777 32 1156677777789999999
Q ss_pred CcchHHHHHhCCCHHHHHHHHccC
Q 003008 219 DKKHRLKIANTDILPLLIKSLEDE 242 (858)
Q Consensus 219 ~~~~~~~i~~~g~i~~Lv~ll~~~ 242 (858)
|.+....+.+.+.++.+++++.++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999999776
No 206
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=69.27 E-value=1.7e+02 Score=35.79 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=109.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCc--hhHHHH
Q 003008 107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLR-SESSAACEAAAGLLRSISSIN--VYRDLV 183 (858)
Q Consensus 107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~-~~~~~~~~~a~~aL~nLs~~~--~~~~~i 183 (858)
|..-+. +.++.-|..|+..+.....+.. . +..-...|.+-.++.... +.+..+...++..|..|+..- ..+...
T Consensus 258 l~t~~~-s~~WK~R~Eale~l~~~l~e~~-~-~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~ 334 (815)
T KOG1820|consen 258 LETEML-SKKWKDRKEALEELVAILEEAK-K-EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA 334 (815)
T ss_pred HHHhhh-ccchHHHHHHHHHHHHHHhccc-c-ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 444443 7899999999999988776554 1 111112334444444443 346777778888888887632 233322
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~ 263 (858)
.++.|.+++-+..- .+.++..+..++-..+.. ......++.+...++++++.++..+...+.........
T Consensus 335 --~~v~p~lld~lkek--k~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 335 --KNVFPSLLDRLKEK--KSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred --HhhcchHHHHhhhc--cHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 35678888888876 666666665555443331 11223467788889999999999988877766544321
Q ss_pred --hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 264 --HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 264 --~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
...-.-.+.++.++.... +..+.+|..+..++.-+-.
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~---D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHIN---DTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhcc---CCcHHHHHHHHHHHHHHHH
Confidence 111111244555555543 3355688888877766654
No 207
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=68.86 E-value=19 Score=43.10 Aligned_cols=148 Identities=16% Similarity=0.170 Sum_probs=93.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223 (858)
Q Consensus 145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~ 223 (858)
...+|.|++......-..+-.-..+|.+.-.+-+.+..+-+ .-..|.|++.|.-+ |+.++..+..++.-+-..-..-
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHHHhcccc
Confidence 56788888888855555666666677766554333322222 34578889999988 8888888888776654211111
Q ss_pred HHHHhCCCHHHHHHHHccCC---HHHHHHHHHHHHHHcC-CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHH
Q 003008 224 LKIANTDILPLLIKSLEDEN---MKVKEAAGGVLANLAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNA 297 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~~---~~~~~~a~~~L~nL~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~a 297 (858)
..---...+|.++.+=++.+ ..+|+.|+.+|..|+. .+...-.-.+..++..|...|... -..+|+.|.++
T Consensus 944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk---KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK---KRLVRKEAVDT 1018 (1030)
T ss_pred chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH---HHHHHHHHHHH
Confidence 11111334666666655553 6789999999999998 555554445556778888888543 23456666553
No 208
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=67.84 E-value=2.9e+02 Score=33.67 Aligned_cols=187 Identities=18% Similarity=0.146 Sum_probs=110.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcC
Q 003008 109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSINVYRDLVAECG 187 (858)
Q Consensus 109 ~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g 187 (858)
..+.++..|.....+.+++...+....... .+. .-.+...+..+.. ..+.++..|+++++.-+....... ...+
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~-~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ 530 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTVINP-QLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPM 530 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccch-hHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchH
Confidence 344434555555567777776554322211 111 1222333333333 345567677777776663322111 1144
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHcCCcCchH
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE--DENMKVKEAAGGVLANLALSKSNHN 265 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--~~~~~~~~~a~~~L~nL~~~~~~~~ 265 (858)
.+..|.++.... ..++....+.+|+..+..+.......+.-..|..+.++. +++|-+...+-.++..++....+..
T Consensus 531 ild~L~qlas~~--s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 531 ILDGLLQLASKS--SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHHHHcccc--cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 567777777776 778888889999998877766666667777787777753 4478788888888888877655555
Q ss_pred HHHhCCCHHHHHHHHccCCCCC-HHHHHHHHHHHHHHhc
Q 003008 266 ILVEAGVIPKLAMLLKANVEGS-KVIRKEARNALIELAK 303 (858)
Q Consensus 266 ~i~~~g~i~~Lv~ll~~~~~~~-~~~~~~a~~aL~nl~~ 303 (858)
-+.+ ..||.|++.|....+.. ......+..+|--+.+
T Consensus 609 ~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 609 PMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred chHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 4443 57899999987654221 1233344444443433
No 209
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.49 E-value=24 Score=40.05 Aligned_cols=98 Identities=17% Similarity=0.064 Sum_probs=70.4
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc---ChhHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV---SRGVCQ 498 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~---~~~~~~ 498 (858)
+.+..++.-+.+++..++..++..|+.+..+-.-.....-.|.+..|..-+-+..+.||..|+.+|..+-. +++++.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 35667777888999999999999999977654444445557788888877778889999999999988754 444332
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHH
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTL 527 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~ 527 (858)
...|..+++ .+.+.+++..+.
T Consensus 171 -------~n~l~~~vq-nDPS~EVRr~al 191 (885)
T COG5218 171 -------VNLLKDIVQ-NDPSDEVRRLAL 191 (885)
T ss_pred -------HHHHHHHHh-cCcHHHHHHHHH
Confidence 235556665 444577777654
No 210
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=67.39 E-value=32 Score=32.86 Aligned_cols=141 Identities=15% Similarity=0.162 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhh-cCchhHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSIS-SINVYRDL 182 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs-~~~~~~~~ 182 (858)
++.|+++|+...++.+|.+++++|+.+..-+.-..+.+. +..+.-. -...+........ ...+.+ ..++.-..
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~---~~~~~~~--~~~~~~~~~~~~l-~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ---KSLDSKS--SENSNDESTDISL-PMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc---ccCCccc--cccccccchhhHH-hhccCCCchHHHHHH
Confidence 466778887566789999999999999765554332222 1111000 0111111111111 111121 22333333
Q ss_pred HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
+ ++..|...|++++ -......++.++.++.... .+...+ .-.+|.++..++..+...++....-|..|
T Consensus 86 v----vi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 86 V----VINALMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred H----HHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3 5788888888774 3333445666666665332 222222 34688899999877778887766666655
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=66.31 E-value=29 Score=40.65 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=94.5
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223 (858)
Q Consensus 144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~ 223 (858)
...++|.|...+++.+..+++.++..+...+..-+ ...+..-.+|.|-.+.-..+ +..++..++.++..+.. .-.+
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt-~~~vkvn~L~c~~~l~q-~lD~ 462 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTT-NLYVKVNVLPCLAGLIQ-RLDK 462 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhccc-chHHHHHHHHHHHHHHH-HHHH
Confidence 46788999999999999999999999998877544 22333345787777533322 78888889988888871 1113
Q ss_pred HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC
Q 003008 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN 283 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~ 283 (858)
..++ .-+.++.+..+..++.+......+..++....-....+....++|.++-+...+
T Consensus 463 ~~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 463 AAVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred HHhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 3332 235677777778899999999999888887655544444557888888876554
No 212
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=66.18 E-value=51 Score=31.66 Aligned_cols=110 Identities=22% Similarity=0.196 Sum_probs=69.2
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc----
Q 003008 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAEC--GAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV---- 218 (858)
Q Consensus 145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~---- 218 (858)
...+..+..+|++.++..|-.++..+.-.....+ .+.+.+. -.+..++.+|+.+ +.+.+.+.+..+|..+..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 3456678899999999888878777777665432 3444342 3578889999986 367788888888888753
Q ss_pred CcchHHHHH---hCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 219 DKKHRLKIA---NTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 219 ~~~~~~~i~---~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
.++...++. -.+.++.+++++.. ....+.++.+|..+-
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 344333332 12334445555543 345566666666553
No 213
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=64.33 E-value=2.2e+02 Score=30.94 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=111.9
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-Cc-hhHHHHH-hcC-cHHHHHHHhcCCC---CC--------H
Q 003008 139 DYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS-IN-VYRDLVA-ECG-AIEEITGLLTRPS---LT--------S 203 (858)
Q Consensus 139 ~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~-~~~~~i~-~~g-~i~~Lv~lL~~~~---~~--------~ 203 (858)
+.++.+ -+..+.+.|.+........+++.|..+.. +. .....+. .-+ -.+.+.+++.... .+ +
T Consensus 51 ~~iL~~--~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 51 RSILQN--HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHH--HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 356643 28888888988888888889999999987 44 3333333 322 3445555554321 01 2
Q ss_pred HHHHHHHHHHHHhcc--CcchHHHHH-hCCCHHHHHHHHccCCHHHHHHHHHHHHH-HcCCc----CchHHHHhCCCHHH
Q 003008 204 EVKEQSMCTLWNLSV--DKKHRLKIA-NTDILPLLIKSLEDENMKVKEAAGGVLAN-LALSK----SNHNILVEAGVIPK 275 (858)
Q Consensus 204 ~~~~~a~~~L~nLs~--~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n-L~~~~----~~~~~i~~~g~i~~ 275 (858)
.+|......+..+.. ++..+..+. +.+.+..+.+-+..+++++....+.+|.. +..++ ..|..+.....+..
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~ 208 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ 208 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence 677777777666643 444565555 66778889999999889999999999984 44443 34446667778999
Q ss_pred HHHHHccCCC-CCHHHHHHHHHHHHHHhcChh
Q 003008 276 LAMLLKANVE-GSKVIRKEARNALIELAKDDY 306 (858)
Q Consensus 276 Lv~ll~~~~~-~~~~~~~~a~~aL~nl~~~~~ 306 (858)
|+++.....+ ....+.+.+-..|..+|.++.
T Consensus 209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 9998766433 112477888889999998865
No 214
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=62.66 E-value=30 Score=41.57 Aligned_cols=147 Identities=13% Similarity=0.034 Sum_probs=98.1
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQI 499 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~ 499 (858)
+.+|.|++.....+..++..=..+|.+ +...|...-.=.-....|.|++-|+-++..+|-.+..++.-+.. ++.....
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 478888888887777788888888888 55555422111135678888899999999999888888777665 3322211
Q ss_pred HHHcCChHHHHHhhcCCCc-cHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 500 MEAEGVVHPLVNTLKNLDI-SESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
- -.-.+|.++.+-.+++. ...+|+.|..||..|..- -++....-.....+..++.-|.++..-+++.|.
T Consensus 947 ~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~--~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 947 H-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRR--LPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred H-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhcc--CCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 1 12357777777765554 367899999999999871 222222333445677777878777666776665
No 215
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=62.61 E-value=16 Score=31.29 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=62.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
.....++.|. ++.+.+|.+++..|.++..... . ......+.+..+...|+++++-+-.+|...|..|+...+.
T Consensus 4 ~~~~al~~L~-dp~~PvRa~gL~~L~~Li~~~~-~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 4 TLQEALSDLN-DPLPPVRAHGLVLLRKLIESKS-E--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHcc-CCCcchHHHHHHHHHHHHHcCC-c--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 3456677786 8888999999999999987665 1 1222467888899999999999999999999999874432
Q ss_pred HHhcCcHHHHHHHhc
Q 003008 183 VAECGAIEEITGLLT 197 (858)
Q Consensus 183 i~~~g~i~~Lv~lL~ 197 (858)
.+++.|++...
T Consensus 77 ----~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ----EVLPILLDEYA 87 (92)
T ss_pred ----HHHHHHHHHHh
Confidence 13566665443
No 216
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.09 E-value=85 Score=35.95 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=77.4
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--
Q 003008 140 YIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-- 217 (858)
Q Consensus 140 ~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-- 217 (858)
.++ .|.+..+++-+.+.+..+|.+++..|.-++..-.--+...-.|.+..|.+-+-.. .+.++..|+.+|+.+-
T Consensus 87 ~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DR--E~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 87 ELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDR--EKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhc
Confidence 555 6888888888899999999999999988876432222344456777777766555 7899999999999875
Q ss_pred -cCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCchHH
Q 003008 218 -VDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSNHNI 266 (858)
Q Consensus 218 -~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~~~~ 266 (858)
.+++|+.. ..|+.+++.+ +.+++.. +|.|+..++.....
T Consensus 163 ~~neen~~~-------n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~ 203 (885)
T COG5218 163 ELNEENRIV-------NLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPC 203 (885)
T ss_pred cCChHHHHH-------HHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchh
Confidence 44444322 2455556544 6677776 46677665554443
No 217
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.25 E-value=2.5e+02 Score=30.39 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=108.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHccc-CCcccHHHHHHhcCc-HHHHHHHHccC-----C--------HHHHHHHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSL-GGKKCIDYIMQFSGC-INLTVNLLRSE-----S--------SAACEAAAG 168 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~-~~~~~~~~ii~~~g~-i~~Li~lL~~~-----~--------~~~~~~a~~ 168 (858)
+..+...|+ +........+++.|..++. .+....+.+....+. .+.+-+++... . +.+|...+.
T Consensus 58 ~k~lyr~L~-~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLS-SSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 666777886 6666777889999999988 444444455544443 45666666322 1 267777666
Q ss_pred HHHHh-hc-CchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHH-hccC----cchHHHHHhCCCHHHHHHHHc
Q 003008 169 LLRSI-SS-INVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWN-LSVD----KKHRLKIANTDILPLLIKSLE 240 (858)
Q Consensus 169 aL~nL-s~-~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~n-Ls~~----~~~~~~i~~~g~i~~Lv~ll~ 240 (858)
.+..+ .. +...+..+.+ .+.+..+.+-|... .+++....+.+|.. +-.+ ...|..+-....+..|..+..
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhc
Confidence 65555 33 3356666665 66788888888876 88898889988885 4433 334667777788999999887
Q ss_pred cCCH----HHHHHHHHHHHHHcCCc
Q 003008 241 DENM----KVKEAAGGVLANLALSK 261 (858)
Q Consensus 241 ~~~~----~~~~~a~~~L~nL~~~~ 261 (858)
..++ .+.+.+-..|..+|.++
T Consensus 215 ~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 215 RDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred ccCCcccchHHHHHHHHHHHHhcCC
Confidence 7766 88999999999998764
No 218
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=60.25 E-value=2.9e+02 Score=31.05 Aligned_cols=173 Identities=16% Similarity=0.096 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHH
Q 003008 117 PLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGL 195 (858)
Q Consensus 117 ~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~l 195 (858)
.+-+..|+.-|..+...+.-...... ....+..+++.|.+ .++..+..|++.|..++.+...|-.=-..=+|..+++.
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~-f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQH-FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHH-HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 34556666656555544422111111 13345677888887 57778888999999988765422211112257777777
Q ss_pred hcCCCCCHHHHHHHH-HHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchH-HHHhCCCH
Q 003008 196 LTRPSLTSEVKEQSM-CTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN-ILVEAGVI 273 (858)
Q Consensus 196 L~~~~~~~~~~~~a~-~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i 273 (858)
-+.. ++.+...|. .++.-++.+...+ +|..+..++...+...-..++..+..+...-.--. .-+-....
T Consensus 380 a~ds--~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 380 AKDS--QDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HhCC--chhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 7765 555544444 3444455443322 23344444444565666666777777765422212 11224677
Q ss_pred HHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008 274 PKLAMLLKANVEGSKVIRKEARNALIELA 302 (858)
Q Consensus 274 ~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~ 302 (858)
|.+++-..+.+ ..+|..|+-+|.-+.
T Consensus 451 P~~iqay~S~S---S~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAYDSTS---STVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHhcCch---HHhhhhHHHhHHHHH
Confidence 88888876643 337777776665443
No 219
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=59.79 E-value=1.7e+02 Score=28.70 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=85.2
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch--h
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV--Y 179 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~--~ 179 (858)
..++.++++.- +++..++..|+..+.-....+-.+. .-++|.|+.+..++++.++..|...+..+....+ .
T Consensus 8 ryl~~Il~~~~-~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 8 RYLKNILELCL-SSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 34566777665 7888999999988875544322221 2368999999999999999999999999965432 1
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHH--H---HHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccC--------CHH
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSE--V---KEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDE--------NMK 245 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~--~---~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~--------~~~ 245 (858)
...+.+ |+..-.+.-+.-..+.. . ...-...|+.+.. +...|..+ +..|++.+... .+.
T Consensus 81 ~~~~~~--gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~ 153 (187)
T PF12830_consen 81 ESRYSE--GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPS 153 (187)
T ss_pred HHHHHH--HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchh
Confidence 112221 34444443221100111 1 3445566666654 34456555 66677776543 233
Q ss_pred HHHHHHHHHHHHcCC
Q 003008 246 VKEAAGGVLANLALS 260 (858)
Q Consensus 246 ~~~~a~~~L~nL~~~ 260 (858)
-......+..||+.-
T Consensus 154 ~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 154 DLDFLLFLAENLATL 168 (187)
T ss_pred HHHHHHHHHHHHhcC
Confidence 345555566666543
No 220
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=59.54 E-value=3.5e+02 Score=31.79 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=80.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhc--CcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc--Ccch
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAEC--GAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV--DKKH 222 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~--~~~~ 222 (858)
.+..++..+. .++..+..+++.|.|+-.++..+..+... -.+..+.+. ++.+ +..++...+....|++. ..++
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~-~s~~-~knl~ia~atlaln~sv~l~~~~ 666 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEA-SSLS-NKNLQIALATLALNYSVLLIQDN 666 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhh-hccc-chhHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555 45666777999999998887777776653 122222222 2221 56677766666677652 2222
Q ss_pred HHHHHhCCCHHHHHHHHcc---C--CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC
Q 003008 223 RLKIANTDILPLLIKSLED---E--NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN 283 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~---~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~ 283 (858)
- +.|+.+.|...+.. + +-+.....+.+|.+|+..+.....+.+.-.+..++.-++..
T Consensus 667 ~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 667 E----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred c----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 1 14555555555432 2 22344566778888888888888888877888888887664
No 221
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=59.42 E-value=1.1e+02 Score=28.14 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=68.8
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li 510 (858)
.+|.......|..+..-...+ ..++..|.+-|.++++.++..|...|-.+..+ ......+.....+..|+
T Consensus 15 ~~D~~~il~icd~I~~~~~~~--------k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGP--------KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCH--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH
Confidence 355555556666654421111 34688888889999999999999999999883 44667777767788899
Q ss_pred HhhcCC-CccHHHHHHHHHHHHHhcC
Q 003008 511 NTLKNL-DISESLMEKTLDILGRILD 535 (858)
Q Consensus 511 ~lL~~~-~~~~~~~~~a~~~L~~l~~ 535 (858)
.++..+ ..+..++..+...+.....
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 998754 5668899988888776654
No 222
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=58.71 E-value=38 Score=32.54 Aligned_cols=106 Identities=19% Similarity=0.181 Sum_probs=63.7
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcC--CchHHHHHhhcCC-hHHHHHHHHHHHhhhc----C
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEG--GIFPLVKLIEEGS-NRAVEAGLAILYNLSM----D 819 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g--~i~~Lv~lL~~~~-~~v~~~a~~aL~nL~~----~ 819 (858)
-+..+.++|+++++..|-.++..+.-....+.+ ..+.+.+ =+..|+..|+..+ ..+.+.|..+|..|.. .
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~---e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW---EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 466778899999999998888776665544322 2222222 2456677777644 5677778888877653 3
Q ss_pred ccchHHHHHc---CchHHHHHhhhcCChhHHHHHHHHhcC
Q 003008 820 SENHSAIIAA---GAVPALRRIVLSQRPQWTRALRLLRNL 856 (858)
Q Consensus 820 ~~~~~~i~~~---g~v~~L~~ll~~~~~~~~~al~~l~~l 856 (858)
++..+++.-. +.+..+++++.. ......++.+|..+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~-~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD-SSCPETALDALATL 141 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc-cccHHHHHHHHHHH
Confidence 4444444433 355666666654 23336677666544
No 223
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=57.97 E-value=35 Score=29.23 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 424 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
....+..|.++..-+|..+...|.++-.... .......+.+..+...|+++++-|-.+|..+|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3455677888888899999999999443222 2222235677788889999999999999999999997
No 224
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=57.45 E-value=7.8 Score=24.53 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhc
Q 003008 762 AREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEE 800 (858)
Q Consensus 762 v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~ 800 (858)
||..|+.+|.++.... ++++|++.|++
T Consensus 1 VR~~Aa~aLg~igd~~------------ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR------------AIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHGGG-SHH------------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH------------HHHHHHHHhcC
Confidence 6888999998875322 44888887764
No 225
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=56.36 E-value=21 Score=33.49 Aligned_cols=64 Identities=9% Similarity=0.193 Sum_probs=52.3
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhc-CChhH-HHHHHHHhc
Q 003008 792 FPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLS-QRPQW-TRALRLLRN 855 (858)
Q Consensus 792 ~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~-~~~~~-~~al~~l~~ 855 (858)
+.|.+-|.++++.++..|+..|-.+..+ ...+..+...+.+..|.+++.. .++.+ ++.+.++..
T Consensus 40 ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~ 107 (144)
T cd03568 40 KAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 5666667888999999999999999876 4577888899999999999988 56666 888877654
No 226
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=54.50 E-value=54 Score=32.68 Aligned_cols=145 Identities=16% Similarity=0.129 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCC---CCHHHHHHHHHHHHHhccCcch--HHHHHhCCCHHHHHHH
Q 003008 164 EAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPS---LTSEVKEQSMCTLWNLSVDKKH--RLKIANTDILPLLIKS 238 (858)
Q Consensus 164 ~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~~L~nLs~~~~~--~~~i~~~g~i~~Lv~l 238 (858)
.+|+..|.-++..++.+..++++..---+...|...+ .....+..++.++..|-.+++. -..+.....+|.+++.
T Consensus 118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 3577888888888899998888765444444444331 1335677788999998876643 4445577889999999
Q ss_pred HccCCHHHHHHHHHHHHHHcCCcCchHHHHh--------CCCHHHHHHHH-ccCCCCCHHHHHHHHHHHHHHhcChhhHH
Q 003008 239 LEDENMKVKEAAGGVLANLALSKSNHNILVE--------AGVIPKLAMLL-KANVEGSKVIRKEARNALIELAKDDYYRI 309 (858)
Q Consensus 239 l~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~--------~g~i~~Lv~ll-~~~~~~~~~~~~~a~~aL~nl~~~~~~~~ 309 (858)
+..+++--+.-++.++..+-.++.+-.-+.+ ..++..+++.+ ..+ +-.+...+.++-..||.++..|.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLsd~p~aR~ 274 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLSDKPHARA 274 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeecCCHhHHH
Confidence 9999888888888898888777654332211 23345555533 223 33467789999999999888775
Q ss_pred HH
Q 003008 310 LI 311 (858)
Q Consensus 310 ~i 311 (858)
.+
T Consensus 275 lL 276 (315)
T COG5209 275 LL 276 (315)
T ss_pred HH
Confidence 54
No 227
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=53.58 E-value=1.4e+02 Score=27.56 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=57.7
Q ss_pred CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 463 GAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 463 g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
.++..|.+-|.++++.++..|...|-.+..+ ......+...+.+..|..++..+...+.++..+...+..-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3667788888899999999999999999884 566778888889999999998665555588888777765554
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.56 E-value=47 Score=38.60 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=95.3
Q ss_pred HHHHHhhcC----CcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc
Q 003008 466 KYLVKLLDH----SSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 466 ~~Lv~LL~~----~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
|....+..+ .++.++.+|..+|..+.. +.+.+. ..+|.++..+.. ...+.++..+...|+.+.. .+
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek-~p~P~IR~NaVvglgD~~v---cf 965 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEK-HPIPRIRANAVVGLGDFLV---CF 965 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhh-CCCcceeccceeeccccce---eh
Confidence 334445544 578999999988888754 433322 357888888873 2237888888888777664 11
Q ss_pred ccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
.. .-...-..|.+-|.+.|.+|++++. .+.+|.-..+.. -.|-++.+..+|.+++..+...|--.+..++
T Consensus 966 N~----~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~K-----VKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 966 NT----TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLK-----VKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred hh----hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHcccee-----eccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 10 0011245677778889999999999 888886544322 2466788899999999999998888888887
Q ss_pred cC
Q 003008 620 II 621 (858)
Q Consensus 620 ~~ 621 (858)
..
T Consensus 1037 ~K 1038 (1128)
T COG5098 1037 KK 1038 (1128)
T ss_pred hc
Confidence 54
No 229
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.18 E-value=1e+02 Score=34.69 Aligned_cols=137 Identities=15% Similarity=0.088 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHH
Q 003008 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAE-CGAIEE 191 (858)
Q Consensus 114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~ 191 (858)
+++..+|.-|++.|.|.+++-...+ +-. ..-.+..++.-|.++ +.++...++.+|..+...-.++...-- ..+.-.
T Consensus 269 dp~a~~r~~a~r~L~~~as~~P~kv-~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 269 DPSAKSRGMACRGLGNTASGAPDKV-RTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred CchhHHHHHHHHHHHHHhccCcHHH-HHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 4556888899999999999844322 222 244566666666655 677777788888777553333222110 122344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcc--CcchHHHHHh--CCCHHHHHHHHccCCHHHHHHHHHHH
Q 003008 192 ITGLLTRPSLTSEVKEQSMCTLWNLSV--DKKHRLKIAN--TDILPLLIKSLEDENMKVKEAAGGVL 254 (858)
Q Consensus 192 Lv~lL~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~a~~~L 254 (858)
+..+..+. +++.+..+..++..|+. +...+....+ .+...+|+--+..+++.+-..+-..+
T Consensus 347 lR~l~~se--~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 347 LRTLFDSE--DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSEL 411 (533)
T ss_pred HHHHHHhc--ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHH
Confidence 55577776 88999888888887763 2334444432 23344555556677776654443333
No 230
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=53.01 E-value=27 Score=32.50 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=51.2
Q ss_pred chHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhc------CChhH-HHHHHHHhc
Q 003008 791 IFPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLS------QRPQW-TRALRLLRN 855 (858)
Q Consensus 791 i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~------~~~~~-~~al~~l~~ 855 (858)
++.|.+-|.++++.++..|+..|-.+..+ ...+..+...+.+..|++++.. .++.+ ++.+.++..
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 35666778899999999999999998866 5677888899999999999953 34556 888776653
No 231
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=52.88 E-value=89 Score=27.08 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=54.2
Q ss_pred hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHH
Q 003008 185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLA 255 (858)
Q Consensus 185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~ 255 (858)
..+.+..|++..+.+ .+.....++..|..|..++.....+.+-|+++.|-++-..-++..+...-.++.
T Consensus 28 ~~~Ll~~LleWFnf~--~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFP--PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 455678888888877 566888899999999999999999999999999777665556766666555543
No 232
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.10 E-value=69 Score=37.34 Aligned_cols=129 Identities=13% Similarity=0.028 Sum_probs=87.1
Q ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhcC-hhH
Q 003008 424 VARLVLILGL----EDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSVS-RGV 496 (858)
Q Consensus 424 i~~Lv~lL~~----~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~-~~~ 496 (858)
-|...+...+ .|+.++..|.-+|.. +|-+.+.+ ..-+|.|+..+. +++|.+|.+|+..|+.++.. ...
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3334455544 689999999999999 56544443 446889999886 88899999999999988752 111
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
.+. .-..|..-|. +++..+++.+..++..|--.| ++--.|-++.+..+|.++|.++..-|-
T Consensus 969 ~de-----~t~yLyrrL~--De~~~V~rtclmti~fLilag-------q~KVKGqlg~ma~~L~deda~Isdmar 1029 (1128)
T COG5098 969 ADE-----HTHYLYRRLG--DEDADVRRTCLMTIHFLILAG-------QLKVKGQLGKMALLLTDEDAEISDMAR 1029 (1128)
T ss_pred hHH-----HHHHHHHHhc--chhhHHHHHHHHHHHHHHHcc-------ceeeccchhhhHhhccCCcchHHHHHH
Confidence 111 1223334444 556889999999988876532 222345677788888888877765554
No 233
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=51.04 E-value=15 Score=23.74 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhc
Q 003008 761 EAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEE 800 (858)
Q Consensus 761 ~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~ 800 (858)
.+|..|+.+|.++.... ++++|+++|++
T Consensus 2 ~vR~~aa~aLg~~~~~~------------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGDEE------------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCCHh------------HHHHHHHHhcC
Confidence 58899999999874333 33778877765
No 234
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=50.85 E-value=1.5e+02 Score=27.81 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li 510 (858)
.+|.......|..+..-...+ ..++..|..-|.+.++.++..|...|-.+.. .......+.....+..|+
T Consensus 15 ~~dw~~il~icD~I~~~~~~~--------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 15 SENWGLILDVCDKVKSDENGA--------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CcCHHHHHHHHHHHhcCCccH--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 455555556666655421111 3467778888889999999999999999988 355677888888999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 511 NTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 511 ~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
.++..+ .+..++......+...+.
T Consensus 87 kl~~~~-~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 87 KLINDR-VHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHhccc-CCHHHHHHHHHHHHHHHH
Confidence 999854 568899988888776654
No 235
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=50.36 E-value=1.1e+02 Score=26.54 Aligned_cols=90 Identities=21% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHH-hcCChhhHHHH-HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhc
Q 003008 437 RAIARAAESIAD-ISINEHMRMLF-KEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLK 514 (858)
Q Consensus 437 ~v~~~a~~aL~~-l~~~~~~~~~l-~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~ 514 (858)
++|..|..-+-. +..+--....+ ...+.+..|+.+...++......+...|..+..++.....+.+-|+...|.++-.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 455555555544 33222222222 3567788889999888877899999999999999998999999999888666554
Q ss_pred CCCccHHHHHHHHH
Q 003008 515 NLDISESLMEKTLD 528 (858)
Q Consensus 515 ~~~~~~~~~~~a~~ 528 (858)
..++..+...-.
T Consensus 82 --~~~~~~~~~id~ 93 (98)
T PF14726_consen 82 --NVEPNLQAEIDE 93 (98)
T ss_pred --cCCHHHHHHHHH
Confidence 223444444433
No 236
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=49.79 E-value=1e+02 Score=32.18 Aligned_cols=161 Identities=10% Similarity=0.079 Sum_probs=90.4
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcC--ChHHHHHhhcCCC--ccHHHHHHHHHHHHHhcCCCccc
Q 003008 465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEG--VVHPLVNTLKNLD--ISESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g--~i~~Li~lL~~~~--~~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
...+..++..-..+-+..+.-.++-+..++.....+...+ ....+..++.... .....+-.+.++++|+.. ..
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~---~~ 141 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS---HP 141 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT---SC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC---CC
Confidence 4455555655555566677777766666777666665443 2444555544322 456677789999999987 33
Q ss_pred ccccccccCc--CcHHHHHhhcCC----ChhHHHHHH-HHHHhhccccch-hhhHhhccchhHHHHhhc--CCCHHHHHH
Q 003008 541 KSKFYDIPVN--GSEKGLDAAESL----DPSIELTGN-VIEAAVSETTTS-YGKVLDSVFIGRMIGIMK--TSYPDLQRK 610 (858)
Q Consensus 541 ~~~~~i~~~~--~i~~Li~ll~s~----d~~v~~~a~-~l~~L~~~~~~~-~~~i~~~g~i~~L~~lL~--s~~~~v~~~ 610 (858)
..+..+.... .+...+...... +..++..+. .+.|++-..... ...=.....+..+++.+. ..+++...+
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 3333333322 233333333332 566777766 778875322111 000111223555666332 268999999
Q ss_pred HHHHHHHhhcCCcchHHH
Q 003008 611 AASILEFITIIDPSMDTI 628 (858)
Q Consensus 611 a~~~L~~l~~~~~~~~~~ 628 (858)
++-+|+++...++.....
T Consensus 222 ~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHhccChhHHHH
Confidence 999999999766554444
No 237
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=49.45 E-value=32 Score=32.19 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=50.9
Q ss_pred chHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhc-CChhH-HHHHHHHhc
Q 003008 791 IFPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLS-QRPQW-TRALRLLRN 855 (858)
Q Consensus 791 i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~-~~~~~-~~al~~l~~ 855 (858)
++.|.+-|.++++.++..|+..|-.+..+ ...+..+...+.+..|.+++.. .++.+ ++++.++..
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 111 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 35666668889999999999999988876 4577888899999999999874 44455 788877653
No 238
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=48.64 E-value=39 Score=40.36 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCC---cHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChH
Q 003008 432 GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHS---SDAVRLATTHALERLSV-SRGVCQIMEAEGVVH 507 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~---~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~ 507 (858)
...+.+-+..+.++|+|+.. ...++.|..++... +..+|..|++||..++. .++ .+.+
T Consensus 500 ~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~--------~v~~ 561 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE--------KVRE 561 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH--------HHHH
T ss_pred hccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH--------HHHH
Confidence 45677888999999999876 55899999988876 58899999999998865 222 2356
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008 508 PLVNTLKNLDISESLMEKTLDILGRI 533 (858)
Q Consensus 508 ~Li~lL~~~~~~~~~~~~a~~~L~~l 533 (858)
.++.++.+..++.++|-.|...|...
T Consensus 562 ~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 562 ILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 67788888888899998887766553
No 239
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=47.01 E-value=66 Score=33.62 Aligned_cols=135 Identities=19% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHcccCCcccHHHHHHhcC-cHHHHHHHHccC----CHHHHHHHHHHHHHhhcCc-hhH-HHHHhcC
Q 003008 115 YDPLDREQAVEALWKYSLGGKKCIDYIMQFSG-CINLTVNLLRSE----SSAACEAAAGLLRSISSIN-VYR-DLVAECG 187 (858)
Q Consensus 115 ~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g-~i~~Li~lL~~~----~~~~~~~a~~aL~nLs~~~-~~~-~~i~~~g 187 (858)
..+..+.-+++++.|+-...... ..++...+ .+...+..+... +..++..++..+.|++..- ..+ ..=....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ 200 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE 200 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 35677888999999998877764 45553333 333343334443 6788888999999997522 111 1001111
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhC-CCHHHHHHHHcc-CCHHHHHHH
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANT-DILPLLIKSLED-ENMKVKEAA 250 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~-g~i~~Lv~ll~~-~~~~~~~~a 250 (858)
.+..+++.+.....++++...++.+|++|...+.......+. |.-..+-..-.. ..+.+++.+
T Consensus 201 ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 201 LLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 355666633332238999999999999999777666666553 433333333322 244444433
No 240
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=46.91 E-value=70 Score=38.17 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=75.9
Q ss_pred cHHHHHHHhCC----CCHHHHHHHHHHHHHh----cCCh------hhHHHHHHcCcHHHHHHhhc----CCcHHHHHHHH
Q 003008 423 GVARLVLILGL----EDERAIARAAESIADI----SINE------HMRMLFKEAGAIKYLVKLLD----HSSDAVRLATT 484 (858)
Q Consensus 423 ~i~~Lv~lL~~----~~~~v~~~a~~aL~~l----~~~~------~~~~~l~~~g~i~~Lv~LL~----~~~~~v~~~a~ 484 (858)
.+..+..|+++ +++.++..|.-+++.+ +... ..+........++.|...|. .++...+..+.
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 511 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYL 511 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 56667777765 3456777777676663 3221 11122333456777776665 45667888999
Q ss_pred HHHHHhhcChhHHHHHHHcCChHHHHHhhcCC-CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--
Q 003008 485 HALERLSVSRGVCQIMEAEGVVHPLVNTLKNL-DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES-- 561 (858)
Q Consensus 485 ~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-- 561 (858)
.||+|+... ..++.|..++... ..+..+|..|.++|..+... .+....+.+.....+
T Consensus 512 kaLgN~g~~----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~----------~~~~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 512 KALGNLGHP----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH----------CPEKVREILLPIFMNTT 571 (618)
T ss_dssp HHHHHHT-G----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----------HHHHHHHHHHHHH-TT
T ss_pred HHhhccCCc----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc----------CcHHHHHHHHHHhcCCC
Confidence 999999742 3577777777755 44577888899998877651 112235566777665
Q ss_pred CChhHHHHHH
Q 003008 562 LDPSIELTGN 571 (858)
Q Consensus 562 ~d~~v~~~a~ 571 (858)
.++++|..|.
T Consensus 572 e~~EvRiaA~ 581 (618)
T PF01347_consen 572 EDPEVRIAAY 581 (618)
T ss_dssp S-HHHHHHHH
T ss_pred CChhHHHHHH
Confidence 4567777766
No 241
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=46.81 E-value=1.4e+02 Score=36.14 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=97.7
Q ss_pred HHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHH--HHHHHHccCCH-
Q 003008 169 LLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILP--LLIKSLEDENM- 244 (858)
Q Consensus 169 aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~--~Lv~ll~~~~~- 244 (858)
+|.++..+. ++...+.+.|++..+.+.++.. ...+.+..+...+.|++...+.+........+. .+-.++.+-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 677887755 6888999999999999999987 477899999999999986554433332221222 33334444433
Q ss_pred HHHHHHHHHHHHHcCCcCc------hH----H--------------HHhCCCHHH-HHHHHccCCCCCHHHHHHHHHHHH
Q 003008 245 KVKEAAGGVLANLALSKSN------HN----I--------------LVEAGVIPK-LAMLLKANVEGSKVIRKEARNALI 299 (858)
Q Consensus 245 ~~~~~a~~~L~nL~~~~~~------~~----~--------------i~~~g~i~~-Lv~ll~~~~~~~~~~~~~a~~aL~ 299 (858)
+.-..++..|+.+..+.+. |. . +.-...+.+ +..+++... .+..+..|++++.
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~--~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSK--SDGSQLWALWTIK 650 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccC--CCchHHHHHHHHH
Confidence 6677788888877654211 11 0 111112223 444444332 2225678999999
Q ss_pred HHhc-ChhhHHHHHHcCCccccccc
Q 003008 300 ELAK-DDYYRILIIEEGLVPVPMVG 323 (858)
Q Consensus 300 nl~~-~~~~~~~i~~~g~v~~~Lv~ 323 (858)
++.. +++++..+.+.|++.. +.+
T Consensus 651 ~~~~~~~~~~~~~~~~~~~~~-~~~ 674 (699)
T KOG3665|consen 651 NVLEQNKEYCKLVRESNGFEL-IEN 674 (699)
T ss_pred HHHHcChhhhhhhHhccchhh-hhh
Confidence 9988 6789999999999983 554
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=46.73 E-value=2.2e+02 Score=26.52 Aligned_cols=96 Identities=17% Similarity=0.111 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHH
Q 003008 432 GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPL 509 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~L 509 (858)
..+|.......|..+..-...+ ..++..|..-|.+.++.++..|...|-.+.. .......+...+.+..|
T Consensus 15 ~~~dw~~ileicD~In~~~~~~--------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 15 REEDWEAIQAFCEQINKEPEGP--------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCCHHHHHHHHHHHHcCCccH--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 3456666666677664311111 2467778888999999999999999999887 36667788888889999
Q ss_pred HHhhcC----CCccHHHHHHHHHHHHHhcC
Q 003008 510 VNTLKN----LDISESLMEKTLDILGRILD 535 (858)
Q Consensus 510 i~lL~~----~~~~~~~~~~a~~~L~~l~~ 535 (858)
+.++.. +..+..++......+..-..
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 999863 23467888888777655543
No 243
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.29 E-value=4.3e+02 Score=33.32 Aligned_cols=184 Identities=12% Similarity=0.118 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCChhhHHHHHH--cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChH
Q 003008 432 GLEDERAIARAAESIADISINEHMRMLFKE--AGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVH 507 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~--~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~ 507 (858)
++.+..+|.++-+.|..++..+.......+ ...-..|..-.++.....+.....+|..|-. +.++...+.+ .|+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK--LIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH--HHH
Confidence 455889999999999997655333221111 1112223333334445566666666666654 2344444433 355
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHhc--CCCcccccccccccCcCcHHHHHhhcCC--ChhHHHHH--H-HHHHhhccc
Q 003008 508 PLVNTLKNLDISESLMEKTLDILGRIL--DPSKEMKSKFYDIPVNGSEKGLDAAESL--DPSIELTG--N-VIEAAVSET 580 (858)
Q Consensus 508 ~Li~lL~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~i~~~~~i~~Li~ll~s~--d~~v~~~a--~-~l~~L~~~~ 580 (858)
.++-.++ +.+...++.+-.||..++ ...-+..+.. ....+..++..+.-. .......+ + ++..+..+.
T Consensus 742 EvIL~~K--e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLK--EVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcc--cccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 5554445 445788888888888777 2110111100 112344455544432 22222222 3 555555544
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
.+....-.=.+.|..+.-+|.+.++++...|+..+..+...-
T Consensus 817 ~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~ 858 (1176)
T KOG1248|consen 817 KNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF 858 (1176)
T ss_pred hccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence 332122222455666777788999999999999998887643
No 244
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=45.52 E-value=1.8e+02 Score=35.64 Aligned_cols=144 Identities=17% Similarity=0.087 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
+..++.....+.+..+...++..|..++..-........ .+..|.++..+...-..+++.+..++..++....
T Consensus 296 l~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~--~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----- 368 (815)
T KOG1820|consen 296 LGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA--KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----- 368 (815)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH--HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-----
Confidence 344444333245555666777777777654332212222 5778888888887777777766666665544211
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCc-chHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDK-KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
....++.+...+++. +|.++..+...+...- ..+ .+...-.-.+.++.++....+.+.++|..+..++.-+
T Consensus 369 -l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 369 -LSKMSEAILEALKGK--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred -HHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 112467888899998 9999988776665543 222 2222222356678888888888999999999998766
No 245
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.51 E-value=1.1e+02 Score=32.28 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=92.1
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
.+...+..|.+.|++....+...+..++ .+++...... ...|-.+++=++.....|-+.|+.++..+..+-.. .+.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--SID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 6777888899999999999999988865 4444433333 23455666777788889999999999999762211 111
Q ss_pred HcCChH-HHHHhhcCC-CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 502 AEGVVH-PLVNTLKNL-DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 502 ~~g~i~-~Li~lL~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
+ .+. .+..|+... .+.--+++.+..+|..+..+ ..+.-.++.|+..+...++.++..++ +..+
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~---------vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~ 231 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH---------VTPQKLLRKLIPILQHSNPRVRAKAALCFSR 231 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc---------cChHHHHHHHHHHHhhhchhhhhhhhccccc
Confidence 1 223 333444433 33356788888888888761 22333567777778888888887776 4443
No 246
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=44.86 E-value=2.7e+02 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=26.6
Q ss_pred CcHHHHHHhhcCC-cHHHHHHHHHHHHHhhcChh
Q 003008 463 GAIKYLVKLLDHS-SDAVRLATTHALERLSVSRG 495 (858)
Q Consensus 463 g~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~~~~ 495 (858)
..++.|.++|+.+ +..+|+.+..+||.|..-+.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP 43 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDP 43 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc
Confidence 3567788888766 49999999999999998333
No 247
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=44.48 E-value=3.9e+02 Score=27.91 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=85.4
Q ss_pred hHHHHHHcCcHHHHHHhhcCCc----HHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCC--ccHHHHHHHHH
Q 003008 455 MRMLFKEAGAIKYLVKLLDHSS----DAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLD--ISESLMEKTLD 528 (858)
Q Consensus 455 ~~~~l~~~g~i~~Lv~LL~~~~----~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~--~~~~~~~~a~~ 528 (858)
.|-.+.=.+.+|.++.-+..++ ......++..|..++.... ...+..+........ +..+....++.
T Consensus 103 ~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~ 175 (262)
T PF14225_consen 103 SRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVS 175 (262)
T ss_pred ccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4555555667888888887776 2444566678888774221 223444443332222 11233334444
Q ss_pred HHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHH
Q 003008 529 ILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDL 607 (858)
Q Consensus 529 ~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v 607 (858)
.|+.-..+ + .+...+..++.++...-+.++.... .|+.+..+-+.+ .. ...+.|.++.++++++..
T Consensus 176 ~l~~~f~P--~-------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~~-~~~dlispllrlL~t~~~-- 242 (262)
T PF14225_consen 176 YLREAFFP--D-------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-SP-HGADLISPLLRLLQTDLW-- 242 (262)
T ss_pred HHHHHhCc--h-------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-CC-cchHHHHHHHHHhCCccH--
Confidence 44442211 1 1123466788888888888888888 999998877766 44 556679999999987654
Q ss_pred HHHHHHHHHHh
Q 003008 608 QRKAASILEFI 618 (858)
Q Consensus 608 ~~~a~~~L~~l 618 (858)
..|+.+|.++
T Consensus 243 -~eAL~VLd~~ 252 (262)
T PF14225_consen 243 -MEALEVLDEI 252 (262)
T ss_pred -HHHHHHHHHH
Confidence 3455555444
No 248
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=44.47 E-value=28 Score=30.60 Aligned_cols=43 Identities=16% Similarity=0.317 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHH
Q 003008 439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRL 481 (858)
Q Consensus 439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~ 481 (858)
.......+..++..|+.=..+++.|+++.|+.||.|+|.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 3466777777888888888899999999999999999987654
No 249
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=44.45 E-value=5.1e+02 Score=29.21 Aligned_cols=142 Identities=10% Similarity=0.116 Sum_probs=79.7
Q ss_pred cHHHHHHhhcC-CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccc
Q 003008 464 AIKYLVKLLDH-SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKS 542 (858)
Q Consensus 464 ~i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 542 (858)
.+..++..|.. .+...+..|...|..++.++.-|-.=-.+-+|..+++.-.++. +..++..+-.|+.-++..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~-~~v~~~Aeed~~~~las~------ 402 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQ-DEVMRVAEEDCLTTLASH------ 402 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCc-hhHHHHHHHHHHHHHHhh------
Confidence 34555666666 6788899999999999885543221112234566666666433 233444433444444431
Q ss_pred ccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008 543 KFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEFI 618 (858)
Q Consensus 543 ~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l 618 (858)
.+...+..+..++-..|......++ .+-.++..-.. +.+.. ....|.+++.-.+....++..|+.+|-.+
T Consensus 403 ----~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~--EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 403 ----LPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSA--EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred ----CchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCH--HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHH
Confidence 1111244444444444433333333 44444433221 22322 35678999999999999999988887655
No 250
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.94 E-value=7.5e+02 Score=30.97 Aligned_cols=132 Identities=15% Similarity=0.118 Sum_probs=83.3
Q ss_pred cCCCcHHHHHH-HhcCCCCHHHHHHHHHHHHHcc-cCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-
Q 003008 99 FGDSYVALFVQ-MLGLDYDPLDREQAVEALWKYS-LGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS- 175 (858)
Q Consensus 99 ~~~g~i~~lv~-lL~~s~d~~~~~~a~~~L~~la-~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~- 175 (858)
.+-.++..|.. +|+ +.+.+.+...+..+..+- ++.++. ++.++.--+|.++.-+..-...++...+..|-.-..
T Consensus 463 kdLeAvqmLqdiFLk-aenkdlqaeVlnrmfkIftshpeNY--ricqelytvpllvlnmegfPsslqvkiLkilEyAVtv 539 (2799)
T KOG1788|consen 463 KDLEAVQMLQDIFLK-AENKDLQAEVLNRMFKIFTSHPENY--RICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTV 539 (2799)
T ss_pred cchHHHHHHHHHHHH-hcCcchhhHHHHHHHHHhccChHHh--hHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhh
Confidence 34556666776 565 555567777777777664 445554 677888899999988877666666555554432211
Q ss_pred -Cc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHh-ccCcchHHHHHhCCCHHHHHHHHcc
Q 003008 176 -IN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNL-SVDKKHRLKIANTDILPLLIKSLED 241 (858)
Q Consensus 176 -~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nL-s~~~~~~~~i~~~g~i~~Lv~ll~~ 241 (858)
+. +.|+ +-.|+-+|+.+. +...+...+.....| +.+...|..+++-|.++.|..-++.
T Consensus 540 vncvPeqE-------LlSLCvLLqqpI-ssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkq 600 (2799)
T KOG1788|consen 540 VNCVPEQE-------LLSLCVLLQQPI-SSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQ 600 (2799)
T ss_pred hccCcHHH-------HHHHHHHhcchh-hHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11 2333 234566777752 444444444444444 4566679999999999999887765
No 251
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.44 E-value=2.3e+02 Score=26.45 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=59.3
Q ss_pred cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 462 AGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 462 ~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
..++..|.+-|.++++.++..|...|-.+..+ ......+...+.+..|+.++.. ..+..++..+...+..-+.
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHH
Confidence 35778888888999999999999999988884 5567778888899999999874 5568899888888766554
No 252
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=41.00 E-value=88 Score=36.72 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=112.8
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQ 498 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~ 498 (858)
.+.++.++.|++++|..+|..-..-+-... +...+.+++....|.+..-+.+.++.+|+..+.++..|+. +..
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---
Confidence 348899999999999999887666655521 1223445678889999999999999999999999888876 222
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC-cHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG-SEKGLDAAESLDPSIELTGN-VIEAA 576 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~-i~~Li~ll~s~d~~v~~~a~-~l~~L 576 (858)
......+..+..+ + ++++..++-..+.||+.+.. ..... ...+. .-.+.+.+.++-+..+..+. +++..
T Consensus 404 -~Ln~Ellr~~ar~-q-~d~~~~irtntticlgki~~---~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at 474 (690)
T KOG1243|consen 404 -NLNGELLRYLARL-Q-PDEHGGIRTNTTICLGKIAP---HLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAAT 474 (690)
T ss_pred -hhcHHHHHHHHhh-C-ccccCcccccceeeeccccc---ccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhc
Confidence 1111112222222 2 35556778888888887765 11110 01112 22334445555555666665 55544
Q ss_pred hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
....... =+....+|.++.+.-+.+..++..|-.++...-
T Consensus 475 ~~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 475 QEYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccccchh---hhhhhccccccccccCcccchhhHHHHHHHHHH
Confidence 3333321 122446788888888888888888777766553
No 253
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.56 E-value=1.3e+02 Score=36.29 Aligned_cols=186 Identities=9% Similarity=0.013 Sum_probs=106.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHc
Q 003008 424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAE 503 (858)
Q Consensus 424 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~ 503 (858)
....+..+.++..-++..+...|.++...-+....+...+.+......|++.++-|--+|...+..|+.- ...
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPE 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cch
Confidence 4445566677778899999999999665446666777899999999999999999999999877777751 233
Q ss_pred CChHHHHHhhcCCCcc--HHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008 504 GVVHPLVNTLKNLDIS--ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET 580 (858)
Q Consensus 504 g~i~~Li~lL~~~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~ 580 (858)
..+|.+..--.+.... .+.+-....++.++...-.+...+.. .-.+..+++-..++|...+..++ .+.+|++-.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~---~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK---AVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH---HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 5666666632211111 12222233444443321001111100 00123344445556666677777 666666433
Q ss_pred cchh-hhHhhccchhHHHHhhc-CCCHHHHHHHHHHHHHhhcC
Q 003008 581 TTSY-GKVLDSVFIGRMIGIMK-TSYPDLQRKAASILEFITII 621 (858)
Q Consensus 581 ~~~~-~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~ 621 (858)
..+. ..+. .....++.+.. ++.+-+++.|+..+..+..+
T Consensus 879 a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 879 AFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 2210 2222 23344555554 45566788888877776543
No 254
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=40.23 E-value=59 Score=31.98 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=45.5
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 792 FPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 792 ~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
+.++++.-+.+..+|..|...+.-+..-.-.+. ..++|.|+.|..++++.+ ..|...+..+
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHH
Confidence 667777788899999999999966544321111 126899999999999999 8888877654
No 255
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.02 E-value=1.8e+02 Score=34.36 Aligned_cols=129 Identities=15% Similarity=0.072 Sum_probs=77.5
Q ss_pred cHHHHHHHhCCC----CHHHHHHHHHHHHHh----cCChhhHHHHHHcCcHHHHHHhhc----CCcHHHHHHHHHHHHHh
Q 003008 423 GVARLVLILGLE----DERAIARAAESIADI----SINEHMRMLFKEAGAIKYLVKLLD----HSSDAVRLATTHALERL 490 (858)
Q Consensus 423 ~i~~Lv~lL~~~----~~~v~~~a~~aL~~l----~~~~~~~~~l~~~g~i~~Lv~LL~----~~~~~v~~~a~~aL~~L 490 (858)
.+..+..|+.++ ++.++..|.-+++.+ +.+.+.+...+-...++.|...|. ..+.+.+.....+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 677777887764 455666666666663 322222112222346666666554 34566677889999998
Q ss_pred hcChhHHHHHHHcCChHHHHHhhc-CCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC--CChhHH
Q 003008 491 SVSRGVCQIMEAEGVVHPLVNTLK-NLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES--LDPSIE 567 (858)
Q Consensus 491 s~~~~~~~~l~~~g~i~~Li~lL~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s--~d~~v~ 567 (858)
.... .++.+...+. +...+..+|..|.++|..+.... +...-+.++....+ .+++++
T Consensus 474 g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~----------p~~v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 474 GHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD----------PRKVQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred CChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC----------chHHHHHHHHHHcCCCCChHHH
Confidence 8522 3455555554 34445789999999999886411 11234556666554 457777
Q ss_pred HHHH
Q 003008 568 LTGN 571 (858)
Q Consensus 568 ~~a~ 571 (858)
..|.
T Consensus 534 iaA~ 537 (574)
T smart00638 534 MAAV 537 (574)
T ss_pred HHHH
Confidence 7776
No 256
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.77 E-value=1.3e+02 Score=27.65 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=57.4
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc--hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003008 146 GCINLTVNLLRSESSAACEAAAGLLRSISSIN--VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS 217 (858)
Q Consensus 146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs 217 (858)
.++..|-+-|.++++.++..|+..|-.+..+. .....+...+.+..|+.++......+.++..++..+.+-+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 34567788888999999999999999998874 4777888888999999998886434448888888877654
No 257
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=39.37 E-value=1.7e+02 Score=34.62 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=85.9
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhhcCch
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL-RSESSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL-~~~~~~~~~~a~~aL~nLs~~~~ 178 (858)
.+..+|.|..-++ +.+..+|..++..+...+..-+. ..+ ..-.+|.+-.+. ...+..++.+++.++..+...-
T Consensus 387 ~~~IlplL~~S~~-~~~~~iQ~~~L~~lptv~e~iD~---~~v-k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLE-DSDVQIQELALQILPTVAESIDV---PFV-KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL- 460 (700)
T ss_pred HHHHHHHHHHHhc-CcchhhHHHHHHhhhHHHHhccH---HHH-HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH-
Confidence 3445555555565 66777888888888777664442 233 355666665553 4457788888988888887221
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCC
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDEN 243 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~ 243 (858)
.+-.+++. +.++.+..+.. ++.+......+..++.........+....++|.++-+...+.
T Consensus 461 D~~~v~d~--~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 461 DKAAVLDE--LLPILKCIKTR--DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHhHHH--HHHHHHHhcCC--CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 22223332 56667777776 899988888888887755444344455667888777766654
No 258
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=38.54 E-value=1.5e+02 Score=36.17 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHh
Q 003008 118 LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLL 196 (858)
Q Consensus 118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL 196 (858)
.++.+++.+|.+++.-.+. +. ...+|.|++-|.-. ...+|.+.+.+++.++..- .++.+ ..||.+...|
T Consensus 946 ~vra~~vvTlakmcLah~~----La--Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y---Tam~d-~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDR----LA--KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY---TAMTD-RYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhH----HH--HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH---HHHHH-HhhHHHHHHh
Confidence 5788889999999874432 22 34678998888755 3345555555555554321 12333 3689999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 197 TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 197 ~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
+.+ ++.+++++.-.|.+|-..+-.|.. -.=.+..+..++ ..+++++..+-.++..+-..
T Consensus 1016 ~Dp--~~iVRrqt~ilL~rLLq~~~vKw~--G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1016 CDP--SVIVRRQTIILLARLLQFGIVKWN--GELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred cCc--hHHHHHHHHHHHHHHHhhhhhhcc--hhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 998 999999999999998643322111 011244455555 34678988888888777544
No 259
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=37.68 E-value=2.5e+02 Score=28.29 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC-----CcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHH
Q 003008 437 RAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH-----SSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPL 509 (858)
Q Consensus 437 ~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~-----~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~L 509 (858)
.-..+|...|.-++..++.+..+.++..--.|-..|.. +..-+|..+.+.++.|.+ ++...+.+.....+|.+
T Consensus 115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34456666677788899999999988764444444432 236788899999999998 56667888889999999
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHhc
Q 003008 510 VNTLKNLDISESLMEKTLDILGRIL 534 (858)
Q Consensus 510 i~lL~~~~~~~~~~~~a~~~L~~l~ 534 (858)
+.++..++ +--+-.++-++..+.
T Consensus 195 LrIme~gS--ElSktvaifI~qkil 217 (315)
T COG5209 195 LRIMELGS--ELSKTVAIFIFQKIL 217 (315)
T ss_pred HHHHHhhh--HHHHHHHHHHHHHHh
Confidence 99998555 333444444444443
No 260
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=37.68 E-value=90 Score=36.87 Aligned_cols=93 Identities=22% Similarity=0.164 Sum_probs=64.8
Q ss_pred cHHHHHHHh----CCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-C--CcHHHHHHHHHHHHHhhc-Ch
Q 003008 423 GVARLVLIL----GLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-H--SSDAVRLATTHALERLSV-SR 494 (858)
Q Consensus 423 ~i~~Lv~lL----~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~--~~~~v~~~a~~aL~~Ls~-~~ 494 (858)
.++.+...| +..+.+.+....++|+|+.. ...++.|..++. . .+..+|..|++||.+++. .+
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 344444444 33566667888999999876 456777777765 2 247899999999999875 33
Q ss_pred hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008 495 GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533 (858)
Q Consensus 495 ~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l 533 (858)
. .+-+.++.++.+..++.++|..|...|...
T Consensus 513 ~--------~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 513 R--------KVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred h--------HHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 2 234567778888888899998877766554
No 261
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=37.39 E-value=71 Score=29.89 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003008 748 IPRLIEQIKSFSSEAREAAVIELNRIIS 775 (858)
Q Consensus 748 i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 775 (858)
+++||.+|.+++.++...|+.+|.+...
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 8999999999999999999999987543
No 262
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=37.27 E-value=1.6e+02 Score=27.13 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc--hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 231 ILPLLIKSLEDENMKVKEAAGGVLANLALSKSN--HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 231 ~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
++..|-+-|+++++.++..|+..|-.+..+... ...+.....+..|+.++.......+.++..++..+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777888899999999999999999987544 3456665777789998875322345688888888877664
No 263
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=9.4e+02 Score=29.89 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=58.1
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhcChh-HHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSVSRG-VCQIM 500 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~~~~-~~~~l 500 (858)
.++.....++++--..|..||+.+...+.- +.+..-.-..+++...+.|. +.+-.|+-.|+.||.-+-.+.+ ....+
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~-df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSI-DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 344555667888888999999999996631 11111122446666677666 7778999999999999877433 22333
Q ss_pred HHc--CChHHHHHhhcC
Q 003008 501 EAE--GVVHPLVNTLKN 515 (858)
Q Consensus 501 ~~~--g~i~~Li~lL~~ 515 (858)
..+ +.++.|+.+.+.
T Consensus 542 ~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 542 SAHVPPIMQELLKLSNE 558 (1010)
T ss_pred hhhhhHHHHHHHHHHHh
Confidence 321 234455556653
No 264
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.08 E-value=4.7e+02 Score=32.98 Aligned_cols=177 Identities=11% Similarity=0.029 Sum_probs=93.8
Q ss_pred hCCCCHHHHHHHHHHHHHhc-CC-hhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcC----
Q 003008 431 LGLEDERAIARAAESIADIS-IN-EHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEG---- 504 (858)
Q Consensus 431 L~~~~~~v~~~a~~aL~~l~-~~-~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g---- 504 (858)
.++.+...+...+.+|..+- .. .+.. .++.. .|+.++=++++.+..-|+.+..+|..++. .....+.|
T Consensus 706 ~qs~~~~~~~~rl~~L~~L~~~~~~e~~-~~i~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~ 779 (1176)
T KOG1248|consen 706 FQSSSSPAQASRLKCLKRLLKLLSAEHC-DLIPK-LIPEVILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPA 779 (1176)
T ss_pred HhccchHHHHHHHHHHHHHHHhccHHHH-HHHHH-HHHHHHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccch
Confidence 34445556666666666632 12 2222 22222 34444444477788889998888888873 11111111
Q ss_pred --ChHHHHHhhcCCCccHHHHHHHH--HHHHHhcCCCccccccccccc----CcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 505 --VVHPLVNTLKNLDISESLMEKTL--DILGRILDPSKEMKSKFYDIP----VNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 505 --~i~~Li~lL~~~~~~~~~~~~a~--~~L~~l~~~~~~~~~~~~i~~----~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
.|...+..+......+..+..+. .++..+.. ++.. +.. .+.+..+..++.+..+++...|+ .+..
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e~~~---~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikv 853 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---EFKN---ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKV 853 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---HHhc---cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444444443311123333222 33333333 1110 111 23355566678889999999999 7777
Q ss_pred hhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 576 AVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 576 L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
++.....-+-.-.....+|.+..+++.....++.++-..|..|.
T Consensus 854 lv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 854 LVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 76544321112222346788888877777778777777776664
No 265
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.15 E-value=1.2e+02 Score=27.22 Aligned_cols=41 Identities=22% Similarity=0.201 Sum_probs=34.3
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 003008 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE 185 (858)
Q Consensus 145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~ 185 (858)
.-+++.|+.-|.+.++++...|..+|...+..+.+.+.++.
T Consensus 7 ~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 7 DWGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 45789999999999999999999999999887766555554
No 266
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=34.36 E-value=55 Score=28.81 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHH
Q 003008 206 KEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKE 248 (858)
Q Consensus 206 ~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 248 (858)
.......|..|+..|+.=..+++.|+++.|+.+|.+++.++..
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4456788888999999888999999999999999998776643
No 267
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=33.71 E-value=3.4e+02 Score=28.30 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=70.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCchhHHHHH
Q 003008 107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINVYRDLVA 184 (858)
Q Consensus 107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~~~~~i~ 184 (858)
|-..|. ++|+.+|..|+..|......-+.. .+ ...-+..|+.+..+. |......++.+|..|...........
T Consensus 4 Lg~~Lt-sed~~~R~ka~~~Ls~vL~~lp~~---~L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~ 78 (262)
T PF14500_consen 4 LGEYLT-SEDPIIRAKALELLSEVLERLPPD---FL-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA 78 (262)
T ss_pred hhhhhC-CCCHHHHHHHHHHHHHHHHhCCHh---hc-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH
Confidence 445676 889899999998887765543321 12 234456666666442 44445445666666654332111110
Q ss_pred hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHccC-CHHHHHHHHHHHHHH
Q 003008 185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLEDE-NMKVKEAAGGVLANL 257 (858)
Q Consensus 185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL 257 (858)
...+..+.+-..........|..+...|..|-.+ .+..+. ..+.+..+++++..+ ||.....+...+..+
T Consensus 79 -~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 79 -VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred -HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 0112333321111111234566666666666433 222222 233455555555544 665555544444433
No 268
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=32.03 E-value=78 Score=33.69 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=47.4
Q ss_pred hhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcc-------------hhhHHHHhcCCchHHHHHhh
Q 003008 744 LYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV-------------DSTRAVASEGGIFPLVKLIE 799 (858)
Q Consensus 744 ~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-------------~~~~~l~~~g~i~~Lv~lL~ 799 (858)
+...+..+++-|.+.+...|..|+.+|.-++.+... .|+..+.+.||+++|+++|.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445688999999999999999999999999887654 36667889999999999996
No 269
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=29.93 E-value=96 Score=28.83 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=56.8
Q ss_pred CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHHHhhcCCCccHH--HHHHHHHHHHHhcC
Q 003008 463 GAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLVNTLKNLDISES--LMEKTLDILGRILD 535 (858)
Q Consensus 463 g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li~lL~~~~~~~~--~~~~a~~~L~~l~~ 535 (858)
.++..|.+-|.+.++.++..|...|-.+..+ +.....+.....+..|..++..+..... +++.+...+.....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4677788888899999999999999988873 5667777777788899998886665555 88888877765554
No 270
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.62 E-value=5.4e+02 Score=30.59 Aligned_cols=140 Identities=12% Similarity=0.012 Sum_probs=80.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhc--CCh----hhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHH-
Q 003008 427 LVLILGLEDERAIARAAESIADIS--INE----HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQ- 498 (858)
Q Consensus 427 Lv~lL~~~~~~v~~~a~~aL~~l~--~~~----~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~- 498 (858)
|..-|+-++..+|.+|+..+.++- ..+ +....+++. --..|..||+++-+.||..|+.-+....+ ..+...
T Consensus 179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 345577789999999999999943 222 334445543 36788999999999999988776666544 222110
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE 574 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~ 574 (858)
.+. ...+..+++-+. .++..+++...-.+|-.+..+ +.+.- +. ..++|.+-.+|.+....|+.... .|.
T Consensus 258 ~i~-~~ll~kI~d~~a-~dt~s~VR~svf~gl~~~l~n---p~sh~-~l-e~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 258 TIL-IDLLKKITDELA-FDTSSDVRCSVFKGLPMILDN---PLSHP-LL-EQLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HHH-HHHHHHHHHHhh-hccchheehhHhcCcHHHHcC---ccchh-HH-HHHHHhcchhhhccchhHHHHHHHHHH
Confidence 000 012333333333 233356777777777777662 21110 00 12344444556666677777666 444
No 271
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=29.52 E-value=4.7e+02 Score=34.02 Aligned_cols=137 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch--hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH
Q 003008 146 GCINLTVNLLRSESSAACEAAAGLLRSISSINV--YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR 223 (858)
Q Consensus 146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~ 223 (858)
+.+..++..|......+|-.|+.+|.++..-++ -....++.|+...+.+- ...+++.|+..+ .|
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Ds------sasVREAaldLv--------Gr 881 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDS------SASVREAALDLV--------GR 881 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccc------hhHHHHHHHHHH--------hh
Q ss_pred HHHHhCCCHHHHHHHHccC----CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008 224 LKIANTDILPLLIKSLEDE----NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~----~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~ 299 (858)
..+.....++....++.+. ...||..+.+.+..+|.....=..+.+ ..+++++.-+++-..+++.+..++.
T Consensus 882 fvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~-----~cakmlrRv~DEEg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 882 FVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD-----MCAKMLRRVNDEEGNIKKLVRETFL 956 (1692)
T ss_pred hhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH-----HHHHHHHHhccchhHHHHHHHHHHH
Q ss_pred HH
Q 003008 300 EL 301 (858)
Q Consensus 300 nl 301 (858)
++
T Consensus 957 kl 958 (1692)
T KOG1020|consen 957 KL 958 (1692)
T ss_pred HH
No 272
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=29.06 E-value=6.6e+02 Score=26.82 Aligned_cols=169 Identities=9% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHc-CChHHHHHhhcCCCcc-HHHHHHHHHHHHHh
Q 003008 457 MLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAE-GVVHPLVNTLKNLDIS-ESLMEKTLDILGRI 533 (858)
Q Consensus 457 ~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~-g~i~~Li~lL~~~~~~-~~~~~~a~~~L~~l 533 (858)
+.+.++|....|+..+..-+-+-+.-++....|+-. .-..|...++. ..=+.++..|-.+..+ .++--++...|...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Q ss_pred cCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccc----hhHHHHhhcCCCHHHH
Q 003008 534 LDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVF----IGRMIGIMKTSYPDLQ 608 (858)
Q Consensus 534 ~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~----i~~L~~lL~s~~~~v~ 608 (858)
.. .......+..+.-.......+..+.=++...|. ....+.......+.++....- .+.--.++++++-..+
T Consensus 153 ir---he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtk 229 (342)
T KOG1566|consen 153 IR---HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTK 229 (342)
T ss_pred Hh---hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehH
Q ss_pred HHHHHHHHHhhcCCcchHHH
Q 003008 609 RKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 609 ~~a~~~L~~l~~~~~~~~~~ 628 (858)
+.+...|+.+..+..+...+
T Consensus 230 rqs~kllg~llldr~N~~~M 249 (342)
T KOG1566|consen 230 RQSLKLLGELLLDRSNSAVM 249 (342)
T ss_pred HHHHHhHHHHHhCCCcHHHH
No 273
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.59 E-value=2.7e+02 Score=30.24 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcC--cHHHHHHhhcCCc---HHHHHHHHHHHHHhhcChh
Q 003008 438 AIARAAESIADISINEHMRMLFKEAG--AIKYLVKLLDHSS---DAVRLATTHALERLSVSRG 495 (858)
Q Consensus 438 v~~~a~~aL~~l~~~~~~~~~l~~~g--~i~~Lv~LL~~~~---~~v~~~a~~aL~~Ls~~~~ 495 (858)
++..|...+..+...+.....++..+ .+..|+.+++.++ ..+|..|..+|..++....
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 34455555555556777788888777 9999999998654 7899999999999998444
No 274
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=28.35 E-value=7.6e+02 Score=26.39 Aligned_cols=126 Identities=16% Similarity=0.177 Sum_probs=85.0
Q ss_pred HHHHHhcCcHHHHHHHhcCC------CC---------------CHHHHHHHHHHHHHhccCcchHHHHH-----------
Q 003008 180 RDLVAECGAIEEITGLLTRP------SL---------------TSEVKEQSMCTLWNLSVDKKHRLKIA----------- 227 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~------~~---------------~~~~~~~a~~~L~nLs~~~~~~~~i~----------- 227 (858)
+..+.+.|.||.|-++...- +. +...+.+-++.+.++|..+.++..+.
T Consensus 2 q~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~ 81 (303)
T PF12463_consen 2 QTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESE 81 (303)
T ss_pred hHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCcccccc
Confidence 46678889999887765521 10 11367788999999998554332111
Q ss_pred -----------hCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCCcCc---hHHHHhCCCHHHHHHHHccCCCCCHHHH
Q 003008 228 -----------NTDILPLLIKSLEDE--NMKVKEAAGGVLANLALSKSN---HNILVEAGVIPKLAMLLKANVEGSKVIR 291 (858)
Q Consensus 228 -----------~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~~~---~~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 291 (858)
..|.+..+++.+... +...+..-+.++...-.+... +..+.+.|.++.++..+-++...+..+.
T Consensus 82 ~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~ 161 (303)
T PF12463_consen 82 LNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVL 161 (303)
T ss_pred ccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHH
Confidence 446666677776654 556788888889888877655 3356888999999995543322234466
Q ss_pred HHHHHHHHHHhcCh
Q 003008 292 KEARNALIELAKDD 305 (858)
Q Consensus 292 ~~a~~aL~nl~~~~ 305 (858)
+..-..|..|.+..
T Consensus 162 Q~~FDLLGELiK~n 175 (303)
T PF12463_consen 162 QSNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHHCCC
Confidence 78888899998853
No 275
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=27.75 E-value=5.8e+02 Score=30.90 Aligned_cols=163 Identities=13% Similarity=0.062 Sum_probs=94.4
Q ss_pred HHHHhc-CChhhHHHHHHcCcHHHHHHhhcC-CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChH--HHHHhhcCCCccH
Q 003008 445 SIADIS-INEHMRMLFKEAGAIKYLVKLLDH-SSDAVRLATTHALERLSVSRGVCQIMEAEGVVH--PLVNTLKNLDISE 520 (858)
Q Consensus 445 aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~--~Li~lL~~~~~~~ 520 (858)
+|++.. .+++.++.+++.|++..+...++. .+.+++..+...+.|++...+.+.......-+. .+-.++. ..++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~-~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLN-KWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh-hcchh
Confidence 888855 689999999999999999999975 458899999999999998554443333222222 2323443 22233
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhH-HHHh
Q 003008 521 SLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGR-MIGI 599 (858)
Q Consensus 521 ~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~-L~~l 599 (858)
+.-..+...|+.+...+.+.. +.+.++....++.. ++... .... ..+.-..-+.+ +..+
T Consensus 573 ersY~~~siLa~ll~~~~~~~------~~~~r~~~~~~l~e----------~i~~~---~~~~-~~~~~~~~f~~~~~~i 632 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTT------ECVFRNSVNELLVE----------AISRW---LTSE-IRVINDRSFFPRILRI 632 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCc------cccchHHHHHHHHH----------Hhhcc---Cccc-eeehhhhhcchhHHHH
Confidence 667778888888876432211 11111111111110 11111 1111 11111222233 4455
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 600 MK-TSYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 600 L~-s~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
+. +..+..+..|++++.++....+....+
T Consensus 633 l~~s~~~g~~lWal~ti~~~~~~~~~~~~~ 662 (699)
T KOG3665|consen 633 LRLSKSDGSQLWALWTIKNVLEQNKEYCKL 662 (699)
T ss_pred hcccCCCchHHHHHHHHHHHHHcChhhhhh
Confidence 54 455678899999999998876554443
No 276
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=25.86 E-value=1.1e+02 Score=28.62 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=17.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 232 LPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 232 i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
|.+|+.+|.+.+..+...|+.+|.+-.
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 678888887777788888888886643
No 277
>PLN03205 ATR interacting protein; Provisional
Probab=25.83 E-value=3.2e+02 Score=29.91 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=78.2
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHHH----hcCChhhHHHHHHcCcHHHHHHhh----cCCcHHHHHHHHHHH
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIAD----ISINEHMRMLFKEAGAIKYLVKLL----DHSSDAVRLATTHAL 487 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~----l~~~~~~~~~l~~~g~i~~Lv~LL----~~~~~~v~~~a~~aL 487 (858)
..+..+..+.+|+.|..-++..++..+.+.|.. ++.+..--.+-++.+++..+--+. .+....||..|+...
T Consensus 317 G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIM 396 (652)
T PLN03205 317 GFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIM 396 (652)
T ss_pred CeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhh
Confidence 445555678888999999999888888887766 444444444556677766543322 244567887777766
Q ss_pred HHhhc--Ch-hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 488 ERLSV--SR-GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 488 ~~Ls~--~~-~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
..+.. ++ .-|+.+...-+...+.++|+ .+...-+|+++...|.-|..
T Consensus 397 nVIlmssna~~eREkFG~~~VfESiaQLLk-kEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 397 NIIVMSTDAYTARESFVSKEVFESISLLLR-KEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred HHhhhccchhHHHHHhcchHHHHHHHHHHH-HhccchhhHHHHHHHHHHHc
Confidence 65554 32 22566666667788888888 44446678888777665554
No 278
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=25.73 E-value=7.2e+02 Score=25.30 Aligned_cols=137 Identities=18% Similarity=0.172 Sum_probs=78.3
Q ss_pred HHHHHH-HHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008 148 INLTVN-LLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 148 i~~Li~-lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~ 225 (858)
++.|+. +-+..+++.....+.+|..++.++ .+...+ +..|..+...+ ......-+.+.+..+-..++ +..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~--~~~~~~~~~rLl~~lw~~~~-r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQG--SLELRYVALRLLTLLWKAND-RHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCC--chhHHHHHHHHHHHHHHhCc-hHH
Confidence 345555 334558888888999999998877 544443 46666666665 55554445555555533221 111
Q ss_pred HHhCCCHHHHHHH--H------ccC--CHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHc-cCCCCCHHHHHHH
Q 003008 226 IANTDILPLLIKS--L------EDE--NMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLK-ANVEGSKVIRKEA 294 (858)
Q Consensus 226 i~~~g~i~~Lv~l--l------~~~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~~~~a 294 (858)
+.+..++.. + ..+ ..+.....+.++..++.....+ -...++.+-..|+ .. .+..+..+
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~---~~~~~ala 142 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSC---DEVAQALA 142 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccc---cHHHHHHH
Confidence 334444444 1 111 2234444456777777654441 1123667777884 33 44577888
Q ss_pred HHHHHHHhc
Q 003008 295 RNALIELAK 303 (858)
Q Consensus 295 ~~aL~nl~~ 303 (858)
+.+|..||.
T Consensus 143 le~l~~Lc~ 151 (234)
T PF12530_consen 143 LEALAPLCE 151 (234)
T ss_pred HHHHHHHHH
Confidence 899999984
No 279
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=24.94 E-value=83 Score=29.24 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=47.1
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhcCChh----H-HHHHHHHh
Q 003008 792 FPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLSQRPQ----W-TRALRLLR 854 (858)
Q Consensus 792 ~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~~~~~----~-~~al~~l~ 854 (858)
+.|.+-|.++++.++..|+..|-.+..+ +..+..+.....+..|.+++.++... + ++++.++.
T Consensus 45 ~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~ 114 (140)
T PF00790_consen 45 RALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQ 114 (140)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHH
Confidence 4555567888999999999999888876 35667777778888888887764443 5 67776654
No 280
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=24.24 E-value=4.3e+02 Score=27.85 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=46.2
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH--HHHHhcCcHHHHHH----Hhc---C-C--CCCHHHHHHHHHH
Q 003008 145 SGCINLTVNLLRSESSAACEAAAGLLRSISSINVYR--DLVAECGAIEEITG----LLT---R-P--SLTSEVKEQSMCT 212 (858)
Q Consensus 145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~--~~i~~~g~i~~Lv~----lL~---~-~--~~~~~~~~~a~~~ 212 (858)
.=.+|.++.++.+.+++.|.+++.+|..+-.+-... ..+...|..+.+-+ ++. + . .+...+...+.-+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 346899999999999999999999999997643322 23555665444333 332 1 0 0134455556666
Q ss_pred HHHhc
Q 003008 213 LWNLS 217 (858)
Q Consensus 213 L~nLs 217 (858)
|..|.
T Consensus 198 L~~L~ 202 (282)
T PF10521_consen 198 LLSLL 202 (282)
T ss_pred HHHHH
Confidence 66653
No 281
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=24.19 E-value=1.9e+02 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.9
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKE 461 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~ 461 (858)
+++-|+.-|.+++++|...|..+|...+..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 788899999999999999999999997765555554443
No 282
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.91 E-value=3.7e+02 Score=29.30 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=59.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCC-------cHHHHHHHHHHHHHhhcChhHHHH
Q 003008 427 LVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHS-------SDAVRLATTHALERLSVSRGVCQI 499 (858)
Q Consensus 427 Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~-------~~~v~~~a~~aL~~Ls~~~~~~~~ 499 (858)
+...+.++++..+..|...|..= +.. ...+|.++.++... +.............|..++...-.
T Consensus 183 It~a~~~~~~~~r~~aL~sL~tD---~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le 253 (343)
T cd08050 183 ITEALVGSNEEKRREALQSLRTD---PGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLE 253 (343)
T ss_pred HHHHHhCCCHHHHHHHHHHhccC---CCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchH
Confidence 34444455566666665555541 111 34677777776543 344455566677777777665444
Q ss_pred HHHcCChHHHHHhhcCC--------CccHHHHHHHHHHHHHhcC
Q 003008 500 MEAEGVVHPLVNTLKNL--------DISESLMEKTLDILGRILD 535 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~--------~~~~~~~~~a~~~L~~l~~ 535 (858)
..=+..+|.++.++-.. ++.-.+|+.|+.+|..++.
T Consensus 254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33344788888766221 2334688999999999886
No 283
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=22.75 E-value=3.2e+02 Score=26.70 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=47.9
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD 819 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~ 819 (858)
-+|.+++=|...+.--+.-|..+...+......+...-+ =-..|.||.+.|++.+++|...++.+|..|...
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 366677777766655666677666666544222111111 123458888999999999999999999999543
No 284
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=22.47 E-value=7.6e+02 Score=25.10 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCC------C-----CCHH-----HHHHHHHHHHHhccCcchHH
Q 003008 161 AACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRP------S-----LTSE-----VKEQSMCTLWNLSVDKKHRL 224 (858)
Q Consensus 161 ~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~------~-----~~~~-----~~~~a~~~L~nLs~~~~~~~ 224 (858)
......+..+..|...++....+.+.+.++.+.+.|... + .++. ....=...|+-||.++.+..
T Consensus 79 ~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl~ 158 (226)
T PF14666_consen 79 KYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGLK 158 (226)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHHH
Confidence 334457777888877777666666888888888876654 0 0111 11223477888999999999
Q ss_pred HHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHH-HHccCCCCCHHHHHHHHHHHHHHh
Q 003008 225 KIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAM-LLKANVEGSKVIRKEARNALIELA 302 (858)
Q Consensus 225 ~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~-ll~~~~~~~~~~~~~a~~aL~nl~ 302 (858)
.+-+.|....+..++...+. .....-+|.+|-+..+ |-...+++ .|.++ ++.+|..|..-|..+.
T Consensus 159 lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~--------~~~R~iLsKaLt~~---s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 159 LLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVD--------GHPRIILSKALTSG---SESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCc--------cHHHHHHHHHHhcC---CHHHHHHHHHHHHHHh
Confidence 99999999999999877633 2233335666643322 23333333 66665 4458888888877664
No 285
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.71 E-value=1.2e+03 Score=28.16 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=85.8
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhhcCch
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNL-LRSESSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~l-L~~~~~~~~~~a~~aL~nLs~~~~ 178 (858)
++..|..|+.+|. |+|..+.+++-..+......+... . .+..|+.. ++.++.. ++.+|..+-...
T Consensus 2 ~~~~~~~l~~~l~-s~~~~~~~~~~~~~~~~~~~~~~~--~------l~~~l~~y~~~t~s~~----~~~il~~~~~P~- 67 (668)
T PF04388_consen 2 QQASITELLSLLE-SNDLSVLEEIKALLQELLNSDREP--W------LVNGLVDYYLSTNSQR----ALEILVGVQEPH- 67 (668)
T ss_pred ccccHHHHHHHhc-CCchhhHHHHHHHHHHHhhccchH--H------HHHHHHHHHhhcCcHH----HHHHHHhcCCcc-
Confidence 3556788999998 888877777766665444332221 1 23344444 3444432 445555443221
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLAN 256 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~n 256 (858)
.+. ....|=+.+. .+..+..++..|+.+-. .+..-..|.+...++.|+++|..+ +..+...|+.+|..
T Consensus 68 ~K~------~~~~l~~~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Lim 137 (668)
T PF04388_consen 68 DKH------LFDKLNDYFV----KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIM 137 (668)
T ss_pred HHH------HHHHHHHHHc----CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 111 2334444454 44678889999999864 577789999999999999999876 66677777777776
Q ss_pred Hc
Q 003008 257 LA 258 (858)
Q Consensus 257 L~ 258 (858)
|-
T Consensus 138 lL 139 (668)
T PF04388_consen 138 LL 139 (668)
T ss_pred Hh
Confidence 64
No 286
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=20.89 E-value=7.4e+02 Score=29.29 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcC-cHHHHHHHHccCCHHHHHHHHHHHHHhhc--CchhH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSG-CINLTVNLLRSESSAACEAAAGLLRSISS--INVYR 180 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g-~i~~Li~lL~~~~~~~~~~a~~aL~nLs~--~~~~~ 180 (858)
+..++..+. .++..+.-++++|.|+-.++... +.++.... .+..+++.-...+..++..-+....|++. ..++-
T Consensus 591 ~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~-~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~ 667 (745)
T KOG0301|consen 591 VGTLIPILN--ADPANQLLVVRCLANLFSNPAGR-ELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE 667 (745)
T ss_pred HHhhhcccc--cchhHHHHHHHHHHHhccCHHHH-HHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc
Confidence 334444442 45677888999999998886653 33332111 12222222222344555443334444432 11111
Q ss_pred HHHHhcCcHHHHHHHhcCC---CCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC
Q 003008 181 DLVAECGAIEEITGLLTRP---SLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE 242 (858)
Q Consensus 181 ~~i~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~ 242 (858)
+.|+.+.|..++... ..+-+.....+.+|.+|+..+....++.+.-.+..+++-+++.
T Consensus 668 ----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 668 ----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred ----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence 144555554433321 1234556678899999999998888888877788888887764
No 287
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=20.52 E-value=4.3e+02 Score=28.61 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhCC--CHHHHHHHHccC---CHHHHHHHHHHHHHHcCCcC
Q 003008 205 VKEQSMCTLWNLSVDKKHRLKIANTD--ILPLLIKSLEDE---NMKVKEAAGGVLANLALSKS 262 (858)
Q Consensus 205 ~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~~---~~~~~~~a~~~L~nL~~~~~ 262 (858)
++..|...|.++...+.....+.+.+ .+..|+++++.+ ...++..|+.+|..++....
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 44456666666666666667777666 899999999876 56899999999999987543
No 288
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=20.50 E-value=6.2e+02 Score=24.80 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=27.0
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCc
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGV 778 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~ 778 (858)
.+.+|-+.|++.+++|.+.+..+|+.|+..+.
T Consensus 81 LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 81 LIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 46777888999999999999999999965543
No 289
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.35 E-value=4.1e+02 Score=28.00 Aligned_cols=70 Identities=14% Similarity=0.201 Sum_probs=46.9
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHh----h--------cCChHHHHHHHHHHH
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLI----E--------EGSNRAVEAGLAILY 814 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL----~--------~~~~~v~~~a~~aL~ 814 (858)
.+|+++.++.+.++++|..++.+|..+...-.......+.+.|-.+.+-+.| . +.+..+-..+-.+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999987654432212355555555443333 2 334445566666666
Q ss_pred hh
Q 003008 815 NL 816 (858)
Q Consensus 815 nL 816 (858)
.|
T Consensus 200 ~L 201 (282)
T PF10521_consen 200 SL 201 (282)
T ss_pred HH
Confidence 66
Done!