Query 003008
Match_columns 858
No_of_seqs 318 out of 2572
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3now_A UNC-45 protein, SD10334 100.0 2.3E-41 7.7E-46 398.0 36.9 507 110-856 255-780 (810)
2 1jdh_A Beta-catenin; beta-cate 100.0 1.8E-40 6E-45 386.7 43.4 505 99-857 14-529 (529)
3 2z6h_A Catenin beta-1, beta-ca 100.0 3.1E-40 1E-44 393.3 45.3 532 99-846 11-553 (644)
4 2z6g_A B-catenin; FULL-length, 100.0 2E-39 6.7E-44 392.2 41.0 534 100-850 148-693 (780)
5 2z6g_A B-catenin; FULL-length, 100.0 4.6E-39 1.6E-43 388.9 35.3 537 102-856 115-661 (780)
6 3now_A UNC-45 protein, SD10334 100.0 1.9E-39 6.4E-44 381.7 28.4 446 100-619 288-781 (810)
7 2z6h_A Catenin beta-1, beta-ca 100.0 1.1E-38 3.8E-43 379.8 34.3 506 144-857 12-526 (644)
8 1jdh_A Beta-catenin; beta-cate 100.0 7.9E-36 2.7E-40 347.4 33.4 466 144-856 15-487 (529)
9 3l6x_A Catenin delta-1; cateni 100.0 1.5E-35 5E-40 337.9 34.6 402 98-628 44-484 (584)
10 3ul1_B Importin subunit alpha- 100.0 3.5E-34 1.2E-38 330.7 38.4 405 100-621 55-479 (510)
11 3l6x_A Catenin delta-1; cateni 100.0 1.1E-34 3.9E-39 330.5 31.2 416 185-831 46-489 (584)
12 3tpo_A Importin subunit alpha- 100.0 3E-33 1E-37 324.7 39.5 403 101-620 75-497 (529)
13 1xm9_A Plakophilin 1; armadill 100.0 8.3E-34 2.8E-38 322.5 32.5 418 103-625 3-454 (457)
14 3ul1_B Importin subunit alpha- 100.0 5.8E-33 2E-37 320.4 38.0 403 188-855 58-475 (510)
15 3nmz_A APC variant protein; pr 100.0 7.2E-34 2.5E-38 317.4 27.4 363 101-623 31-453 (458)
16 3tpo_A Importin subunit alpha- 100.0 3.7E-32 1.3E-36 315.5 40.5 403 188-855 77-494 (529)
17 4b8j_A Importin subunit alpha- 100.0 7.8E-32 2.7E-36 313.6 41.5 406 101-623 73-499 (528)
18 1xm9_A Plakophilin 1; armadill 100.0 8.2E-33 2.8E-37 314.3 31.2 413 147-824 3-455 (457)
19 3nmz_A APC variant protein; pr 100.0 9.3E-33 3.2E-37 308.5 27.3 332 98-537 66-452 (458)
20 1wa5_B Importin alpha subunit; 100.0 5.2E-31 1.8E-35 306.6 42.3 409 100-624 85-514 (530)
21 4b8j_A Importin subunit alpha- 100.0 2.8E-30 9.6E-35 300.5 41.9 401 187-856 74-494 (528)
22 1wa5_B Importin alpha subunit; 100.0 2.3E-29 7.8E-34 292.8 42.9 401 186-856 86-508 (530)
23 2jdq_A Importin alpha-1 subuni 100.0 1.8E-29 6.2E-34 287.3 38.0 402 103-623 21-446 (450)
24 2jdq_A Importin alpha-1 subuni 100.0 4.2E-28 1.4E-32 276.0 41.1 409 147-821 21-446 (450)
25 3nmw_A APC variant protein; AR 100.0 1E-28 3.6E-33 268.1 23.9 271 160-537 46-336 (354)
26 3nmw_A APC variant protein; AR 100.0 6.6E-28 2.3E-32 261.7 25.0 265 118-493 47-335 (354)
27 3opb_A SWI5-dependent HO expre 99.9 6.2E-25 2.1E-29 253.0 30.8 491 166-844 232-761 (778)
28 3opb_A SWI5-dependent HO expre 99.9 4.7E-25 1.6E-29 254.0 25.3 403 97-578 250-728 (778)
29 4hxt_A De novo protein OR329; 99.9 3.8E-22 1.3E-26 207.6 26.1 236 146-493 2-242 (252)
30 4hxt_A De novo protein OR329; 99.9 1.9E-22 6.7E-27 209.9 22.1 238 102-369 2-243 (252)
31 4db8_A Armadillo-repeat protei 99.9 2.2E-22 7.6E-27 209.8 21.4 238 100-367 10-251 (252)
32 4db8_A Armadillo-repeat protei 99.9 7.9E-22 2.7E-26 205.6 23.1 236 145-492 11-251 (252)
33 3tt9_A Plakophilin-2; cell adh 99.9 1.7E-22 5.9E-27 203.9 15.7 199 101-304 7-230 (233)
34 4db6_A Armadillo repeat protei 99.9 1.5E-20 5E-25 190.1 21.6 199 99-304 9-210 (210)
35 3tt9_A Plakophilin-2; cell adh 99.8 7.9E-21 2.7E-25 191.7 13.9 202 146-368 8-230 (233)
36 4db6_A Armadillo repeat protei 99.8 1.9E-19 6.4E-24 182.0 20.9 195 421-620 11-209 (210)
37 1b3u_A Protein (protein phosph 99.8 1.2E-16 4.1E-21 187.8 34.2 570 104-856 12-585 (588)
38 1xqr_A HSPBP1 protein; armadil 99.8 9.2E-18 3.2E-22 177.1 19.4 194 104-304 30-239 (296)
39 4fdd_A Transportin-1; heat rep 99.7 7E-16 2.4E-20 189.6 33.8 613 102-856 90-740 (852)
40 1xqr_A HSPBP1 protein; armadil 99.7 2.4E-17 8.4E-22 173.9 17.0 197 423-622 29-240 (296)
41 1b3u_A Protein (protein phosph 99.7 5.2E-15 1.8E-19 173.7 35.5 533 103-817 50-586 (588)
42 4fdd_A Transportin-1; heat rep 99.7 2.1E-14 7.3E-19 176.4 35.4 596 101-856 44-697 (852)
43 3grl_A General vesicular trans 99.6 1.9E-11 6.4E-16 137.6 43.8 460 101-620 20-550 (651)
44 2vgl_B AP-2 complex subunit be 99.6 1.1E-12 3.8E-17 153.7 30.2 399 101-620 12-419 (591)
45 2vgl_B AP-2 complex subunit be 99.5 2.7E-11 9.2E-16 141.8 34.2 404 102-622 49-459 (591)
46 2bpt_A Importin beta-1 subunit 99.5 4.8E-11 1.6E-15 146.7 37.6 638 102-855 134-854 (861)
47 1qgr_A Protein (importin beta 99.5 1.2E-10 4E-15 143.5 40.3 442 101-621 127-680 (876)
48 3grl_A General vesicular trans 99.5 2.9E-11 9.8E-16 136.1 30.9 404 99-561 57-528 (651)
49 1oyz_A Hypothetical protein YI 99.5 5.5E-12 1.9E-16 133.1 23.4 254 422-856 23-280 (280)
50 2bpt_A Importin beta-1 subunit 99.4 6.3E-11 2.2E-15 145.6 32.7 398 104-580 97-531 (861)
51 1qgr_A Protein (importin beta 99.4 1.6E-09 5.6E-14 133.2 40.7 364 105-535 93-479 (876)
52 1oyz_A Hypothetical protein YI 99.3 1E-10 3.5E-15 123.3 24.2 254 100-529 21-276 (280)
53 1w63_A Adapter-related protein 99.3 2.8E-09 9.7E-14 125.1 36.3 369 147-620 71-451 (618)
54 1u6g_C TIP120 protein, CAND1; 99.3 4.7E-09 1.6E-13 134.1 40.5 669 102-842 6-745 (1230)
55 3ltm_A Alpha-REP4; protein eng 99.3 3.6E-10 1.2E-14 113.6 21.8 92 422-535 19-110 (211)
56 3ltj_A Alpharep-4; protein eng 99.3 5.3E-10 1.8E-14 111.4 21.8 93 421-535 13-105 (201)
57 1w63_A Adapter-related protein 99.2 4.5E-08 1.5E-12 114.9 39.8 321 188-621 71-415 (618)
58 1u6g_C TIP120 protein, CAND1; 99.0 6.7E-09 2.3E-13 132.6 23.7 509 147-856 7-596 (1230)
59 1ibr_B P95, importin beta-1 su 99.0 1.4E-08 4.9E-13 114.8 22.8 155 419-578 125-288 (462)
60 3ltj_A Alpharep-4; protein eng 99.0 1.2E-08 4.1E-13 101.4 17.4 152 422-619 45-197 (201)
61 3ltm_A Alpha-REP4; protein eng 99.0 1E-08 3.6E-13 102.8 16.2 156 422-623 50-206 (211)
62 2vgl_A Adaptor protein complex 98.9 9.4E-06 3.2E-10 94.9 42.0 341 146-620 74-433 (621)
63 2vgl_A Adaptor protein complex 98.9 1E-06 3.5E-11 103.0 32.6 390 103-620 75-470 (621)
64 1ibr_B P95, importin beta-1 su 98.9 3.2E-08 1.1E-12 111.8 19.3 387 106-621 5-438 (462)
65 4gmo_A Putative uncharacterize 98.8 2.5E-08 8.6E-13 118.3 13.6 170 147-318 35-230 (684)
66 4gmo_A Putative uncharacterize 98.7 3.5E-08 1.2E-12 117.0 10.4 195 423-619 35-257 (684)
67 1ho8_A Vacuolar ATP synthase s 98.3 3.1E-05 1.1E-09 84.3 20.5 346 101-492 76-476 (480)
68 3b2a_A TON_1937, putative unch 98.1 9.2E-05 3.2E-09 71.9 17.4 185 422-622 33-220 (265)
69 1te4_A Conserved protein MTH18 98.1 4.1E-07 1.4E-11 83.4 -0.6 116 423-574 13-129 (131)
70 1ho8_A Vacuolar ATP synthase s 98.0 0.0001 3.6E-09 80.2 15.9 351 422-816 77-474 (480)
71 4ady_A RPN2, 26S proteasome re 98.0 0.0012 4.2E-08 78.3 26.2 314 101-535 391-719 (963)
72 3b2a_A TON_1937, putative unch 97.9 0.00041 1.4E-08 67.4 17.1 187 101-304 32-219 (265)
73 1te4_A Conserved protein MTH18 97.9 3.3E-05 1.1E-09 70.5 9.1 88 747-856 43-131 (131)
74 2qk2_A LP04448P; mini spindles 97.9 7.5E-05 2.6E-09 76.2 12.6 180 426-620 19-205 (242)
75 4ady_A RPN2, 26S proteasome re 97.9 0.00068 2.3E-08 80.5 22.0 271 422-819 392-677 (963)
76 2qk2_A LP04448P; mini spindles 97.8 0.00013 4.5E-09 74.3 12.7 181 106-304 19-206 (242)
77 3tjz_B Coatomer subunit gamma; 97.7 0.00073 2.5E-08 72.0 16.7 277 106-488 72-349 (355)
78 3tjz_B Coatomer subunit gamma; 97.5 0.0018 6.1E-08 69.0 16.1 277 465-853 70-348 (355)
79 2qk1_A Protein STU2; STU2P, XM 97.4 0.001 3.4E-08 67.9 12.5 185 427-619 21-219 (249)
80 2qk1_A Protein STU2; STU2P, XM 97.4 0.0034 1.2E-07 64.0 16.2 188 107-303 21-220 (249)
81 2db0_A 253AA long hypothetical 97.2 0.011 3.7E-07 55.1 15.4 183 422-628 32-218 (253)
82 3dad_A FH1/FH2 domain-containi 97.0 0.0076 2.6E-07 62.5 14.0 169 468-641 123-310 (339)
83 2db0_A 253AA long hypothetical 97.0 0.23 8E-06 46.3 21.6 190 99-313 29-221 (253)
84 1wa5_C Importin alpha RE-expor 96.7 1.4 4.7E-05 54.1 33.8 108 100-218 33-152 (960)
85 3dad_A FH1/FH2 domain-containi 96.6 0.045 1.5E-06 56.8 15.8 148 149-298 121-281 (339)
86 2iw3_A Elongation factor 3A; a 95.9 0.11 3.8E-06 62.5 16.8 299 151-534 19-323 (986)
87 1wa5_C Importin alpha RE-expor 95.6 1.1 3.8E-05 54.9 24.5 195 105-306 88-324 (960)
88 2of3_A ZYG-9; multifunctional 94.6 0.46 1.6E-05 48.1 13.8 177 426-619 50-235 (266)
89 4ffb_C Protein STU2; tubulin f 94.0 0.99 3.4E-05 46.2 15.5 183 427-620 14-212 (278)
90 2iw3_A Elongation factor 3A; a 93.9 5.4 0.00019 48.0 23.2 294 107-490 19-322 (986)
91 2fv2_A RCD1 required for cell 93.5 2.2 7.5E-05 42.3 15.5 194 119-314 17-235 (268)
92 4ffb_C Protein STU2; tubulin f 92.5 2 6.8E-05 43.9 15.0 185 107-303 14-212 (278)
93 1lrv_A LRV, leucine-rich repea 92.3 0.25 8.7E-06 49.5 7.4 24 592-615 195-218 (244)
94 1lrv_A LRV, leucine-rich repea 91.3 0.16 5.6E-06 50.9 4.7 59 555-615 175-241 (244)
95 3ebb_A Phospholipase A2-activa 89.8 11 0.00036 39.0 17.0 131 159-294 161-297 (304)
96 3oc3_A Helicase MOT1, MOT1; re 89.3 0.71 2.4E-05 50.9 7.7 157 438-619 244-403 (800)
97 3m1i_C Exportin-1; heat repeat 88.3 44 0.0015 41.0 24.4 187 102-304 48-264 (1049)
98 2of3_A ZYG-9; multifunctional 87.6 0.9 3.1E-05 45.9 6.8 96 747-854 133-232 (266)
99 3ibv_A Exportin-T; karyopherin 87.5 59 0.002 39.5 27.1 194 419-618 125-359 (980)
100 3oc3_A Helicase MOT1, MOT1; re 87.4 6.7 0.00023 43.4 13.6 141 464-619 175-327 (800)
101 2fv2_A RCD1 required for cell 87.1 5.4 0.00019 39.5 11.7 144 439-588 73-233 (268)
102 1upk_A MO25 protein; transfera 86.4 19 0.00064 37.3 15.8 207 498-819 72-284 (341)
103 2f31_A Diaphanous protein homo 82.4 32 0.0011 33.7 15.5 135 145-282 42-209 (233)
104 3eg5_B Protein diaphanous homo 79.9 54 0.0019 34.9 17.2 140 139-283 104-276 (383)
105 3u0r_A Apoptosis inhibitor 5; 79.7 11 0.00039 40.9 11.4 120 116-256 41-160 (507)
106 3ebb_A Phospholipase A2-activa 79.3 8.5 0.00029 39.7 10.2 116 109-228 154-273 (304)
107 3l9t_A Putative uncharacterize 79.0 15 0.0005 36.1 11.1 139 464-625 72-212 (240)
108 4hat_C Exportin-1; heat repeat 78.3 11 0.00038 46.1 12.5 140 115-261 465-620 (1023)
109 3u0r_A Apoptosis inhibitor 5; 75.3 9.9 0.00034 41.3 9.4 117 432-571 38-155 (507)
110 2x19_B Importin-13; nuclear tr 75.3 25 0.00086 42.7 14.8 133 114-260 460-600 (963)
111 2f31_A Diaphanous protein homo 74.6 33 0.0011 33.7 12.8 148 99-249 40-218 (233)
112 3l9t_A Putative uncharacterize 73.9 57 0.002 31.9 13.7 142 148-313 73-218 (240)
113 1upk_A MO25 protein; transfera 71.5 63 0.0022 33.4 14.0 200 99-306 75-286 (341)
114 2bnx_A Diaphanous protein homo 71.3 1.1E+02 0.0038 32.5 16.9 135 145-282 46-213 (386)
115 3eg5_B Protein diaphanous homo 70.3 54 0.0018 34.9 14.0 147 99-248 106-283 (383)
116 3ibv_A Exportin-T; karyopherin 69.0 1.5E+02 0.0051 35.9 19.3 114 434-564 20-142 (980)
117 2x1g_F Cadmus; transport prote 62.4 26 0.0009 42.6 11.0 131 115-260 476-616 (971)
118 3c2g_A SYS-1 protein; beta-cat 62.3 1E+02 0.0036 31.8 13.0 135 165-302 262-402 (619)
119 2x1g_F Cadmus; transport prote 61.3 44 0.0015 40.6 12.7 192 102-303 501-722 (971)
120 2bnx_A Diaphanous protein homo 60.2 73 0.0025 33.9 12.6 148 99-249 44-222 (386)
121 1lsh_A Lipovitellin (LV-1N, LV 56.8 35 0.0012 41.9 10.6 171 422-623 391-579 (1056)
122 3m1i_C Exportin-1; heat repeat 55.2 45 0.0015 41.0 11.4 138 115-259 465-618 (1049)
123 2x19_B Importin-13; nuclear tr 55.0 1E+02 0.0034 37.2 14.4 131 432-578 459-599 (963)
124 4hat_C Exportin-1; heat repeat 54.4 24 0.00083 43.1 8.5 98 434-535 465-569 (1023)
125 1lsh_A Lipovitellin (LV-1N, LV 52.5 42 0.0014 41.2 10.3 91 425-533 443-541 (1056)
126 3c2g_A SYS-1 protein; beta-cat 52.0 96 0.0033 32.0 10.8 113 125-241 264-378 (619)
127 1x5b_A Signal transducing adap 37.8 1.3E+02 0.0045 27.4 8.8 93 433-534 30-124 (163)
128 3ldz_A STAM-1, signal transduc 37.4 57 0.0019 29.1 6.1 70 188-259 43-114 (140)
129 3ldz_A STAM-1, signal transduc 35.4 58 0.002 29.0 5.8 74 101-175 41-114 (140)
130 3o2t_A Symplekin; heat repeat, 34.6 2.2E+02 0.0075 30.1 11.0 65 421-490 62-127 (386)
131 1juq_A ADP-ribosylation factor 33.7 29 0.00099 32.2 3.6 64 792-855 53-125 (171)
132 3gs3_A Symplekin, LD45768P; he 32.4 3.8E+02 0.013 26.4 13.6 141 105-257 15-171 (257)
133 1x5b_A Signal transducing adap 30.7 93 0.0032 28.5 6.5 69 188-258 53-124 (163)
134 3gs3_A Symplekin, LD45768P; he 30.5 2.6E+02 0.0089 27.6 10.2 64 422-490 53-117 (257)
135 3g2s_A C-terminal fragment of 30.2 1.1E+02 0.0036 27.6 6.6 70 188-259 49-126 (149)
136 1mhq_A ADP-ribosylation factor 29.8 1.6E+02 0.0055 26.3 7.8 95 433-535 16-116 (148)
137 3qml_C Protein SLS1, nucleotid 29.7 4.6E+02 0.016 26.6 13.4 146 424-577 24-188 (315)
138 1juq_A ADP-ribosylation factor 29.0 1.8E+02 0.0062 26.7 8.2 95 433-535 28-128 (171)
139 3zyq_A Hepatocyte growth facto 28.1 1.8E+02 0.0061 28.2 8.5 94 433-535 23-118 (226)
140 1mhq_A ADP-ribosylation factor 28.1 1E+02 0.0036 27.6 6.2 70 188-259 39-116 (148)
141 3g2s_A C-terminal fragment of 27.3 1.2E+02 0.004 27.3 6.4 74 101-175 47-126 (149)
142 3nfq_A Transcription factor IW 23.2 4.3E+02 0.015 24.2 9.3 82 451-535 64-151 (170)
143 3gae_A Protein DOA1; UFD3, CDC 20.6 1.3E+02 0.0043 29.8 5.8 101 432-535 100-217 (253)
144 2xpp_A IWS1, ECU08_0440; trans 20.3 4.6E+02 0.016 23.3 10.4 82 451-535 49-136 (145)
No 1
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.3e-41 Score=397.97 Aligned_cols=507 Identities=15% Similarity=0.140 Sum_probs=399.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcH
Q 003008 110 MLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAI 189 (858)
Q Consensus 110 lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i 189 (858)
.+. +.+.+....|.+++.++..+.......++...|+++.|+.++.++++.++++|++++.+++.+.++|+.+.+.|+
T Consensus 255 ~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv- 332 (810)
T 3now_A 255 KLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV- 332 (810)
T ss_dssp HHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-
T ss_pred Hhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-
Confidence 554 677778899999999999888766556666789999999999999999999999999999999899999999886
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCC----HHHHHHHHccC--CHHHHHHHHHHHHHHcCCc
Q 003008 190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDI----LPLLIKSLEDE--NMKVKEAAGGVLANLALSK 261 (858)
Q Consensus 190 ~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~----i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~~ 261 (858)
|.|+.++++. ++.++..|+.+|++++... +.+....+.|. ++.|+++|.++ ++++++.|+|+|.+|+..+
T Consensus 333 ~~L~~Ll~s~--~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~ 410 (810)
T 3now_A 333 DILKRLYHSK--NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410 (810)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc
Confidence 9999999987 8999999999999997432 33334444555 45677788887 8899999999999999999
Q ss_pred CchHHHHh-CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008 262 SNHNILVE-AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL 340 (858)
Q Consensus 262 ~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~ 340 (858)
+.|..++. .|++|.||++|++++ +.++..|+++|.|++...+. ...++. +..+..|....
T Consensus 411 ~vk~~lv~d~g~Ip~LV~LL~s~d---~~i~~~al~~L~NLt~~~d~------q~~~~~-l~~la~~s~~~--------- 471 (810)
T 3now_A 411 ECKEKLIEDKASIHALMDLARGGN---QSCLYGVVTTFVNLCNAYEK------QEMLPE-MIELAKFAKQH--------- 471 (810)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTC---GGGHHHHHHHHHHHTTCSCC------CCCCCS-CGGGTTTTCCS---------
T ss_pred HHHHHHHHccchHHHHHHHhCCCC---hHHHHHHHHHHHHHcCCchh------hhhhHH-HHHHHHHhhcc---------
Confidence 99998874 689999999998753 34889999999999985432 144453 55542111000
Q ss_pred CCcchhhcccCCchhhHHHHHHhccCCCCCCccchH-HHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008 341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDE-AKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP 419 (858)
Q Consensus 341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~-~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 419 (858)
. ... ...+. ..+. .+.+.+.
T Consensus 472 ------------------------v--~~~-~~ld~~~~v~--------------------------------~r~~~Vv 492 (810)
T 3now_A 472 ------------------------I--PEE-HELDDVDFIN--------------------------------KRITVLA 492 (810)
T ss_dssp ------------------------C--CCS-SCHHHHHHHH--------------------------------HHHHHHH
T ss_pred ------------------------C--ccc-cccccHHHHH--------------------------------HHHHHHH
Confidence 0 000 00000 0000 0002334
Q ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHH
Q 003008 420 WIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQI 499 (858)
Q Consensus 420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 499 (858)
..|+++.|+.+|+++++.++.+|+|+|+|++.++++|..+++.|++++|+.+|.++++..++.|+++|.||+.+.+....
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999863221111
Q ss_pred H---HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHh
Q 003008 500 M---EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAA 576 (858)
Q Consensus 500 l---~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L 576 (858)
+ ...|++|+|+.+|. ++.+...+..++++|.||+..
T Consensus 573 ~~~~~~~~aIppLv~LL~-~~~~~l~~~eAl~AL~NLa~~---------------------------------------- 611 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQ-QDCTALENFESLMALTNLASM---------------------------------------- 611 (810)
T ss_dssp TTTHHHHHTHHHHHHTTS-TTSCHHHHHHHHHHHHHHTTS----------------------------------------
T ss_pred hcchhhhcHHHHHHHHhC-CCCcHHHHHHHHHHHHHHhcC----------------------------------------
Confidence 1 12358999999987 333445556788888888761
Q ss_pred hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCC
Q 003008 577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGR 656 (858)
Q Consensus 577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~ 656 (858)
.+..+ ..+.+.|++|.|+.+|.+.++.+|+.|+++|+|++.+++.+..+
T Consensus 612 --~d~~~-~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~---------------------------- 660 (810)
T 3now_A 612 --NESVR-QRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMF---------------------------- 660 (810)
T ss_dssp --CHHHH-HHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHH----------------------------
T ss_pred --CHHHH-HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHH----------------------------
Confidence 11234 67888999999999999999999999999999998755432222
Q ss_pred CCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCc
Q 003008 657 QPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFEN 736 (858)
Q Consensus 657 ~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 736 (858)
T Consensus 661 -------------------------------------------------------------------------------- 660 (810)
T 3now_A 661 -------------------------------------------------------------------------------- 660 (810)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHh-cCCchHHHHHhhcCChHHHHHHHHHHHh
Q 003008 737 PINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVAS-EGGIFPLVKLIEEGSNRAVEAGLAILYN 815 (858)
Q Consensus 737 ~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 815 (858)
+...|+++.|+.++.+++.++|++|++||+||+.++.. +++.+++ .|++++|+++|.++++++|..|+++|+|
T Consensus 661 -----v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N 734 (810)
T 3now_A 661 -----EGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN 734 (810)
T ss_dssp -----HSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred -----HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 00135689999999999999999999999999986544 7888888 9999999999999999999999999999
Q ss_pred hhcC-ccchHHHHHcCchHHHHHhhhcC---ChhH-HHHHHHHhcC
Q 003008 816 LSMD-SENHSAIIAAGAVPALRRIVLSQ---RPQW-TRALRLLRNL 856 (858)
Q Consensus 816 L~~~-~~~~~~i~~~g~v~~L~~ll~~~---~~~~-~~al~~l~~l 856 (858)
|+.. ++....|.+.|+++.|..++..+ ++.+ +.|+.+|.++
T Consensus 735 L~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~l 780 (810)
T 3now_A 735 MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAA 780 (810)
T ss_dssp HHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHH
Confidence 9875 56678899999999999999766 4566 8888888764
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.8e-40 Score=386.72 Aligned_cols=505 Identities=17% Similarity=0.163 Sum_probs=415.8
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~ 177 (858)
.+.|+++.|+.+|+ ++|+.+|..|+.+|.+++.++.+ +..++...|+++.|+++|.++ +++++..++.+|++|+.++
T Consensus 14 ~~~~~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 14 LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp ---CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHH-HHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhHhhHHHHHHHhC-CCCHHHHHHHHHHHHHHHcCCcc-HHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 46899999999998 89999999999999999987765 346664459999999999865 8899999999999999998
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
+++..+.+.|++|.|+++|+++ ++.++..++++|.|++.+ +..+..+++.|+++.|+++++++++.++..++.+|.+
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~ 169 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 169 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999976 4568888899999999999999999999999999999
Q ss_pred HcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008 257 LALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELH 335 (858)
Q Consensus 257 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~ 335 (858)
++.. ++++..+.+.|+++.|++++++++ ....++.+..+|++++.+++++..+++.|+++ +|++++
T Consensus 170 la~~~~~~~~~i~~~~~i~~L~~ll~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~-~L~~ll---------- 236 (529)
T 1jdh_A 170 LAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL---------- 236 (529)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHH-HHHTTT----------
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHhCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH-HHHHHH----------
Confidence 9985 678888999999999999998764 45577789999999999999999999999999 599874
Q ss_pred CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008 336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL 415 (858)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~ 415 (858)
+.++...+..++++|.|++.+...
T Consensus 237 ------------~~~~~~~~~~a~~~L~~l~~~~~~-------------------------------------------- 260 (529)
T 1jdh_A 237 ------------TDPSQRLVQNCLWTLRNLSDAATK-------------------------------------------- 260 (529)
T ss_dssp ------------TSSCHHHHHHHHHHHHHHHTTCTT--------------------------------------------
T ss_pred ------------hCCChHHHHHHHHHHHHHhcCChh--------------------------------------------
Confidence 112225566789999988644310
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcC--CcHHHHHHHHHHHHHhhc
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDH--SSDAVRLATTHALERLSV 492 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~--~~~~v~~~a~~aL~~Ls~ 492 (858)
.....+.++.|+.+|.+++++++..|+++|++++. +++++..+.+.|+++.|+.+|.+ +++.++..++++|+||+.
T Consensus 261 -~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 261 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp -CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred -hHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 00113588999999999999999999999999775 56799999999999999999975 348999999999999988
Q ss_pred C-hh---HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008 493 S-RG---VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL 568 (858)
Q Consensus 493 ~-~~---~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~ 568 (858)
. ++ .+..+.+.|+++.|+.++.++. +..+++.++++|+|++..
T Consensus 340 ~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~v~~~a~~~l~nl~~~-------------------------------- 386 (529)
T 1jdh_A 340 RHQEAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLALC-------------------------------- 386 (529)
T ss_dssp SSTTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTTS--------------------------------
T ss_pred CCchHHHHHHHHHHcCChhHHHHHhcccc-chHHHHHHHHHHHHHhcC--------------------------------
Confidence 3 33 5788999999999999998443 457888899999999861
Q ss_pred HHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccC
Q 003008 569 TGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALED 648 (858)
Q Consensus 569 ~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~ 648 (858)
...+ ..+.+.|++|.|+++|.+.++.+|..|+|++.|.. +.
T Consensus 387 -----------~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~--------~~------------------- 427 (529)
T 1jdh_A 387 -----------PANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ--------FV------------------- 427 (529)
T ss_dssp -----------GGGH-HHHHHTTHHHHHHHHHHHHHHHHC-------------------CB-------------------
T ss_pred -----------hhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchh--------hh-------------------
Confidence 1223 56778899999999999888888888888776521 10
Q ss_pred CCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccC
Q 003008 649 TDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLS 728 (858)
Q Consensus 649 ~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~ 728 (858)
T Consensus 428 -------------------------------------------------------------------------------- 427 (529)
T 1jdh_A 428 -------------------------------------------------------------------------------- 427 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHH
Q 003008 729 GPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEA 808 (858)
Q Consensus 729 ~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~ 808 (858)
. |+ ...+++..++.+|++|+.. .++...+.+.|++++|+++|.+++++++..
T Consensus 428 ---------------~-~~----------~~~~i~~~~~~al~~L~~~--~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~ 479 (529)
T 1jdh_A 428 ---------------E-GV----------RMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRV 479 (529)
T ss_dssp ---------------T-TB----------CHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred ---------------c-cc----------cHHHHHHHHHHHHHHHhcC--chHHHHHhccCCccHHHHHHcCCchHHHHH
Confidence 0 00 0122445677888888753 346678999999999999999999999999
Q ss_pred HHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcCC
Q 003008 809 GLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNLP 857 (858)
Q Consensus 809 a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l~ 857 (858)
|+.+|.||+.+++.+..+.+.|+++.|..++.++++.+ .+|.++|.+++
T Consensus 480 a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 480 AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 99999999988888899999999999999999999999 99999998764
No 3
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-40 Score=393.27 Aligned_cols=532 Identities=14% Similarity=0.141 Sum_probs=414.2
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~ 177 (858)
...|+++.|+.+|+ ++++.+|..|+.+|.+++.+..+. ..++...|+++.|++.|.++ +++++..|+.+|.+|+.++
T Consensus 11 ~~~g~i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~~~~-~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 11 LATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp -CTTTHHHHHHHHT-CSCHHHHHHHHHHHHHHHTSTTHH-HHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhchHHHHHHHHc-CCCHHHHHHHHHHHHHHHCCChhH-HHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 57899999999998 899999999999999999987753 45553458999999999876 8999999999999999998
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
+++..+.+.|+++.|+++|+++ ++.++..|+++|.||+.+ +..+..+++.|+++.|+++|+++++.++..++.+|.+
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~ 166 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 166 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence 8999999999999999999998 999999999999999976 4568888899999999999999999999999999999
Q ss_pred HcC-CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008 257 LAL-SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELH 335 (858)
Q Consensus 257 L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~ 335 (858)
++. +++++..+.+.|+++.|++++++++ ....++.++.+|+|++.++.++..+++.|+++ +|++++
T Consensus 167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~--~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~-~L~~ll---------- 233 (644)
T 2z6h_A 167 LAYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL---------- 233 (644)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHH-HHHTTT----------
T ss_pred HHhcCcHHHHHHHHcCChHHHHHHHHcCC--hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHH-HHHHHH----------
Confidence 997 6788889999999999999998753 45578899999999999999999999999999 599874
Q ss_pred CCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccc
Q 003008 336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQL 415 (858)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~ 415 (858)
+..+...+..++++|.|++.....
T Consensus 234 ------------~~~~~~~~~~a~~~L~nL~~~~~~-------------------------------------------- 257 (644)
T 2z6h_A 234 ------------TDPSQRLVQNCLWTLRNLSDAATK-------------------------------------------- 257 (644)
T ss_dssp ------------TCSCHHHHHHHHHHHHHHGGGCTT--------------------------------------------
T ss_pred ------------hcCCHHHHHHHHHHHHHHhhcchh--------------------------------------------
Confidence 122235566799999998643210
Q ss_pred ccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhc
Q 003008 416 TLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSV 492 (858)
Q Consensus 416 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~ 492 (858)
.....+.++.|+.+|.+++++++..|+++|++++. +++++..+.+.|+++.|+.+|.+. .+.++..|+++|+||+.
T Consensus 258 -~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 258 -QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp -CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred -hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 01113578999999999999999999999999764 578899999999999999999863 37999999999999987
Q ss_pred C-h---hHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008 493 S-R---GVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL 568 (858)
Q Consensus 493 ~-~---~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~ 568 (858)
. + ..+..+.+.|+++.|+.+|..+ .+..+++.++++|+|++. ....+..+.+.++++.|+.++.+.+.+++.
T Consensus 337 ~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~---~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~ 412 (644)
T 2z6h_A 337 RHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL---CPANHAPLREQGAIPRLVQLLVRAHQDTQR 412 (644)
T ss_dssp SSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTT---SGGGHHHHHHTTHHHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHcc---CHHHHHHHHHcCCHHHHHHHHhccchhhhh
Confidence 3 3 3466788999999999999843 346899999999999997 222223344444455555555444444444
Q ss_pred HHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhcc
Q 003008 569 TGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALE 647 (858)
Q Consensus 569 ~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~ 647 (858)
.++ ++.+-. +. .|+ .+..++..++.+|.+++.+...
T Consensus 413 ~a~~al~n~~---------~~-~~~----------~~~~v~~~a~~aL~~La~~~~~----------------------- 449 (644)
T 2z6h_A 413 RTSMGGTQQQ---------FV-EGV----------RMEEIVEGCTGALHILARDVHN----------------------- 449 (644)
T ss_dssp C-------------------C-CSS----------CHHHHHHHHHHHHHHHTTSHHH-----------------------
T ss_pred Hhhhccccch---------hc-ccc----------cHHHHHHHHHHHHHHHhcCHHH-----------------------
Confidence 433 222200 00 000 1122333344444333321100
Q ss_pred CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008 648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL 727 (858)
Q Consensus 648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~ 727 (858)
T Consensus 450 -------------------------------------------------------------------------------- 449 (644)
T 2z6h_A 450 -------------------------------------------------------------------------------- 449 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHH
Q 003008 728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807 (858)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 807 (858)
+..+.+.|++++|+++|.+++++++..|+++|.+++.. .+.+..+.+.|++++|++++.++++++|.
T Consensus 450 -----------~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~g~l~~L~~ll~~~~~~vr~ 516 (644)
T 2z6h_A 450 -----------RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVAT 516 (644)
T ss_dssp -----------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHH
T ss_pred -----------HHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHcCChhHHHHHHcCCCHHHHH
Confidence 00122567899999999999999999999999999854 33667889999999999999999999999
Q ss_pred HHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH
Q 003008 808 AGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW 846 (858)
Q Consensus 808 ~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~ 846 (858)
.|+.+|.+|+.+.... ...+. ++..+..++.+.+..+
T Consensus 517 ~A~~aL~~l~~~~~~~-~~~~~-~~~il~~~~~~~~~~w 553 (644)
T 2z6h_A 517 YAAAVLFRMSEDKPQD-YKKRL-SVELTSSLFRTEPMAW 553 (644)
T ss_dssp HHHHHHHHHTTTSCHH-HHHHH-HHHHHHHHSCCSCGGG
T ss_pred HHHHHHHHHhccCcHh-hhccc-chHHHHHHHhCCCccc
Confidence 9999999999886422 11111 3677778888877776
No 4
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2e-39 Score=392.19 Aligned_cols=534 Identities=16% Similarity=0.157 Sum_probs=402.4
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCch
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~~ 178 (858)
..|+++.|+.+|. ++++.+|..|+.+|.+++.+..+. ..++...|+++.|+++|+++ +++++..|+.+|.+|+..++
T Consensus 148 ~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~-~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~ 225 (780)
T 2z6g_A 148 ATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225 (780)
T ss_dssp HHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHH-HHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH
T ss_pred HhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhH-HHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch
Confidence 3789999999998 889999999999999999876653 45553348999999999866 89999999999999999988
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
++..+.+.|+|+.|+++|+++ ++.++..|+++|.||+.+ +..+..+++.|+++.|+++|++++..++..++.+|.++
T Consensus 226 ~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 226 GLLAIFKSGGIPALVNMLGSP--VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999976 45678888999999999999999999999999999999
Q ss_pred cCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCC
Q 003008 258 ALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHS 336 (858)
Q Consensus 258 ~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~ 336 (858)
+.. ++++..+++.|+++.|+.+++.++ ....++.++.+|++|+.++.++..+++.|+++ .|+.++
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~-~Ll~lL----------- 369 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ-ALGLHL----------- 369 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHH-HHGGGT-----------
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHHHhhcChHHHHHHHHhchHH-HHHHHH-----------
Confidence 974 678888999999999999998753 44567789999999999999999999999999 499874
Q ss_pred CCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccc
Q 003008 337 WPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLT 416 (858)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~ 416 (858)
...+...+..++++|.+++.....
T Consensus 370 -----------~~~~~~~~~~a~~~L~~L~~~~~~--------------------------------------------- 393 (780)
T 2z6g_A 370 -----------TDPSQRLVQNCLWTLRNLSDAATK--------------------------------------------- 393 (780)
T ss_dssp -----------TCSCHHHHHHHHHHHHHHHTTCTT---------------------------------------------
T ss_pred -----------cCCchHHHHHHHHHHHHHhccchh---------------------------------------------
Confidence 111224566688888888643310
Q ss_pred cccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhcCC-c-HHHHHHHHHHHHHhhc-
Q 003008 417 LLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLDHS-S-DAVRLATTHALERLSV- 492 (858)
Q Consensus 417 ~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~~~-~-~~v~~~a~~aL~~Ls~- 492 (858)
.....+.++.|+.+|++++++++..|+++|++++. +++++..+++.|+++.|+.+|.+. + ..++..|+++|+||+.
T Consensus 394 ~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~ 473 (780)
T 2z6g_A 394 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 473 (780)
T ss_dssp CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 01113478999999999999999999999999764 568899999999999999999763 3 5999999999999987
Q ss_pred Chh---HHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHH
Q 003008 493 SRG---VCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELT 569 (858)
Q Consensus 493 ~~~---~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~ 569 (858)
+++ .+..+.+.|+++.|+.+|..++ +..+++.++++|+|++. ....+..+.+.
T Consensus 474 ~~~~~~~~~~v~~~~~l~~L~~lL~~~~-~~~v~~~A~~aL~nLa~---~~~~~~~i~~~-------------------- 529 (780)
T 2z6g_A 474 HQDAEMAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL---CPANHAPLREQ-------------------- 529 (780)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHHS---SHHHHHHHHHT--------------------
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhcCCC-hHHHHHHHHHHHHHHhc---CHHHHHHHHHC--------------------
Confidence 333 3668889999999999998443 45899999999999997 22222233333
Q ss_pred HHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHH--hhcCCcchHHHHhhchHHHHHHHHHhhhcc
Q 003008 570 GNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEF--ITIIDPSMDTIISADIESGLDAIFQQKALE 647 (858)
Q Consensus 570 a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~--l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~ 647 (858)
|+++.|+++|.+.+.++++.++|++.+ +...... ..+
T Consensus 530 ---------------------g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~-~~v------------------- 568 (780)
T 2z6g_A 530 ---------------------GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM-EEI------------------- 568 (780)
T ss_dssp ---------------------THHHHHHHHHHHHHHHHHHTTC------CCSTTCCH-HHH-------------------
T ss_pred ---------------------CCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh-HHH-------------------
Confidence 445555555555444555555554443 1110000 000
Q ss_pred CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008 648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL 727 (858)
Q Consensus 648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~ 727 (858)
.....+.|..+....
T Consensus 569 ------------------------~~~a~~aL~~La~~~----------------------------------------- 583 (780)
T 2z6g_A 569 ------------------------VEACTGALHILARDI----------------------------------------- 583 (780)
T ss_dssp ------------------------HHHHHHHHHHHTTSH-----------------------------------------
T ss_pred ------------------------HHHHHHHHHHHhcCh-----------------------------------------
Confidence 000011111110000
Q ss_pred CCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHH
Q 003008 728 SGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVE 807 (858)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 807 (858)
..+..+...|++++|+.+|.+++++++..|+.+|.+|+.. .+.+..+.+.|++++|+++++++++++|+
T Consensus 584 ---------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~ 652 (780)
T 2z6g_A 584 ---------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVAT 652 (780)
T ss_dssp ---------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred ---------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 0001123567999999999999999999999999999743 33666899999999999999999999999
Q ss_pred HHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhHHHHH
Q 003008 808 AGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQWTRAL 850 (858)
Q Consensus 808 ~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~~al 850 (858)
.|+.+|.+|+.+.+.... ...++..+..++.+.+..+..+-
T Consensus 653 ~A~~aL~~l~~~~~~~~~--~~l~~~ll~~l~~~~~~~w~~~~ 693 (780)
T 2z6g_A 653 YAAAVLFRMSEDKPQDYK--KRLSVELTSSLFRTEPMTWNETG 693 (780)
T ss_dssp HHHHHHHHHHTTSCTTHH--HHHHHHHHHHC------------
T ss_pred HHHHHHHHHHcCChHhhh--ccccHHHHHHHHhCCCcccccCc
Confidence 999999999988763321 11256777888888887774433
No 5
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.6e-39 Score=388.95 Aligned_cols=537 Identities=18% Similarity=0.139 Sum_probs=407.3
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
.+++.++..|. +++..+|..++..+... + +..+ ..|+++.|+.+|.++++.+|+.|+.+|.+|+...+++.
T Consensus 115 ~~i~~lv~~L~-~~~~~~r~~a~~~l~~~-----~--~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 115 SAHPTNVQRLA-EPSQMLKHAVVNLINYQ-----D--DAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----H--HHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccHHHHHHHhc-CccHHHHHHHHHHHHhh-----h--HHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 45899999997 66667888887777643 1 1344 38999999999999999999999999999999888888
Q ss_pred HHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 182 LVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 182 ~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
.+.+ .|+++.|+++|++.. ++.+++.|+.+|.+|+.+++++..+.+.|+++.|+++|+++++.++..|+++|.||+..
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 264 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLH 264 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 8886 589999999998543 89999999999999999999999999999999999999999999999999999999987
Q ss_pred c-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008 261 K-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP 338 (858)
Q Consensus 261 ~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~ 338 (858)
. ..+..+.+.|+++.|+++|++. ...+++.++.+|++++. +++++..+++.|+++. |++++
T Consensus 265 ~~~~~~~v~~~g~v~~Lv~lL~~~---~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~-Lv~lL------------- 327 (780)
T 2z6g_A 265 QEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQILAYGNQESKLIILASGGPQA-LVNIM------------- 327 (780)
T ss_dssp STTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHH-HHHHH-------------
T ss_pred ChhhHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH-HHHHH-------------
Confidence 4 5666778899999999999874 34578899999999997 6899999999999994 99864
Q ss_pred CCCCcchhhcccCC-chhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008 339 SLPDGTEIERTSQG-PSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL 417 (858)
Q Consensus 339 ~~~~~~~~~~~~~~-~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (858)
+.++. ..+..++.+|++|+....++ ..
T Consensus 328 ---------~~~~~~~~~~~a~~aL~~Ls~~~~~~-------------------------------------------~~ 355 (780)
T 2z6g_A 328 ---------RTYTYEKLLWTTSRVLKVLSVCSSNK-------------------------------------------PA 355 (780)
T ss_dssp ---------TTCCCHHHHHHHHHHHHHHHTSTTHH-------------------------------------------HH
T ss_pred ---------hcCCHHHHHHHHHHHHHHhhcChHHH-------------------------------------------HH
Confidence 22221 23344788888887543210 12
Q ss_pred ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhH
Q 003008 418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGV 496 (858)
Q Consensus 418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~ 496 (858)
+...++++.|+.++.+++..++..|+++|.+++...... ....++++.|+.+|+++++.++..|+++|++|+. ++++
T Consensus 356 i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~ 433 (780)
T 2z6g_A 356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433 (780)
T ss_dssp HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 222457899999999999999999999999976533221 1125789999999999999999999999999998 5788
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccc-ccccccccCcCcHHHHHhhcCCCh-hHHHHHH-HH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEM-KSKFYDIPVNGSEKGLDAAESLDP-SIELTGN-VI 573 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~i~~~~~i~~Li~ll~s~d~-~v~~~a~-~l 573 (858)
+..+.+.|+++.|+.+|..++..+.+++.+.++|++|+....+. ..+..+...++++.|++++.+++. .++..++ +|
T Consensus 434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL 513 (780)
T 2z6g_A 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 513 (780)
T ss_dssp HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999999999999854444689999999999998632221 123456778999999999998775 8999999 99
Q ss_pred HHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008 574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI 653 (858)
Q Consensus 574 ~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~ 653 (858)
.|++.....+ ..+. ..+++..|+
T Consensus 514 ~nLa~~~~~~----------~~i~-----------------------------------~~g~i~~Lv------------ 536 (780)
T 2z6g_A 514 RNLALCPANH----------APLR-----------------------------------EQGAIPRLV------------ 536 (780)
T ss_dssp HHHHSSHHHH----------HHHH-----------------------------------HTTHHHHHH------------
T ss_pred HHHhcCHHHH----------HHHH-----------------------------------HCCCHHHHH------------
Confidence 9997543322 0110 011122222
Q ss_pred CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008 654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD 733 (858)
Q Consensus 654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 733 (858)
.++..........+. | ++.
T Consensus 537 ---------------------------~lL~~~~~~~~~~aa--------------------~---al~----------- 555 (780)
T 2z6g_A 537 ---------------------------QLLVRAHQDTQRRTS--------------------M---GGT----------- 555 (780)
T ss_dssp ---------------------------HHHHHHHHHHHHTTC--------------------------------------
T ss_pred ---------------------------HHHHhcchhHHHHHh--------------------h---ccc-----------
Confidence 111110000000000 0 000
Q ss_pred CCccchhhhhhhcchHHHHHHhc-cCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHH
Q 003008 734 FENPINMEVTLYEAIPRLIEQIK-SFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAI 812 (858)
Q Consensus 734 ~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~a 812 (858)
+. + +.. ....++++.++.||++|+.. .++...+.+.|++++|+++|.++++.++..|+.+
T Consensus 556 --nq------------~---~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~a 616 (780)
T 2z6g_A 556 --QQ------------Q---FVEGVRMEEIVEACTGALHILARD--IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 616 (780)
T ss_dssp ----------------C---CSTTCCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred --cc------------h---hhcccChHHHHHHHHHHHHHHhcC--hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 00 0 011 12357899999999999853 3366689999999999999999999999999999
Q ss_pred HHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 813 LYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 813 L~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
|+||+.+++.+..+.+.|+++.|.+++.++++.+ ..|.++|.++
T Consensus 617 L~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 617 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp HHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999899999999999999999999999999 8888888765
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-39 Score=381.73 Aligned_cols=446 Identities=15% Similarity=0.117 Sum_probs=366.3
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc--
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-- 177 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-- 177 (858)
.+|+++.|+.++. +++..++..|++++.+++.+.. +++.++ +.|+ +.|+.+++++++.++..|+.+|++++...
T Consensus 288 ~~G~v~~li~Ll~-s~~~~~q~~A~~al~~aa~~~~-~R~~I~-~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 288 REGILQMILAMAT-TDDELQQRVACECLIAASSKKD-KAKALC-EQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp TTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHTTSHH-HHHTTH-HHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred ccchHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCcH-HHHHHH-HcCc-HHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 7799999999998 8898999999999999888744 444555 6765 99999999999999999999999997532
Q ss_pred hhHHHHHhcCc----HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH-hCCCHHHHHHHHccCCHHHHHHHHH
Q 003008 178 VYRDLVAECGA----IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA-NTDILPLLIKSLEDENMKVKEAAGG 252 (858)
Q Consensus 178 ~~~~~i~~~g~----i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~a~~ 252 (858)
+....+.+.|. ++.++++|.++..++++++.|+++|.+|+.+++.|..++ +.|++|.|+++|+++++.++..+++
T Consensus 364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~ 443 (810)
T 3now_A 364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVT 443 (810)
T ss_dssp TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHH
Confidence 33323334454 566777888753367899999999999999999999988 5799999999999999999999999
Q ss_pred HHHHHcCCcC------------------------------ch---HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008 253 VLANLALSKS------------------------------NH---NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299 (858)
Q Consensus 253 ~L~nL~~~~~------------------------------~~---~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~ 299 (858)
+|.||+...+ .+ ..+++.|++|.|+++|+++ ++.+++.|+++|.
T Consensus 444 ~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~---s~~vqe~Aa~aL~ 520 (810)
T 3now_A 444 TFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE---SHNSQELIARVLN 520 (810)
T ss_dssp HHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC---CHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence 9999998542 12 4678999999999999886 4669999999999
Q ss_pred HHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHH
Q 003008 300 ELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKM 379 (858)
Q Consensus 300 nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~ 379 (858)
|++.++++|..++++|+++ +|+.++ +.++...+..|+++|.|++.+.+..
T Consensus 521 NLA~d~~~r~~Vv~~Gaip-~Lv~LL----------------------~s~~~~~k~~Aa~AL~nL~~~~~p~------- 570 (810)
T 3now_A 521 AVCGLKELRGKVVQEGGVK-ALLRMA----------------------LEGTEKGKRHATQALARIGITINPE------- 570 (810)
T ss_dssp HHHTSHHHHHHHHHTTHHH-HHHHHH----------------------HSSCHHHHHHHHHHHHHHHHHSCHH-------
T ss_pred HHcCCHHHHHHHHHCCCHH-HHHHHH----------------------ccCCHHHHHHHHHHHHHHhcCCChh-------
Confidence 9999999999999999999 799974 3333356777999999996443110
Q ss_pred hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC-CHHHHHHHHHHHHHhcC-ChhhHH
Q 003008 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE-DERAIARAAESIADISI-NEHMRM 457 (858)
Q Consensus 380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~l~~-~~~~~~ 457 (858)
..|......+++++|+.+|.++ +...+..|+++|.|++. +++++.
T Consensus 571 ---------------------------------~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~ 617 (810)
T 3now_A 571 ---------------------------------VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQ 617 (810)
T ss_dssp ---------------------------------HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred ---------------------------------hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHH
Confidence 0000000124899999999876 44556799999999775 578899
Q ss_pred HHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH-cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCC
Q 003008 458 LFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA-EGVVHPLVNTLKNLDISESLMEKTLDILGRILDP 536 (858)
Q Consensus 458 ~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~-~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~ 536 (858)
.+++.|+++.|+.||.++++.+|+.|+++|+||+.+++.+..+.+ .|+++.|+.++..+ +..+++.|+++|+|++..
T Consensus 618 ~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 618 RIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAIITSV 695 (810)
T ss_dssp HHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999998888888885 78999999999854 489999999999999862
Q ss_pred Cccccccccccc-CcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCC---CHHHHHHH
Q 003008 537 SKEMKSKFYDIP-VNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS---YPDLQRKA 611 (858)
Q Consensus 537 ~~~~~~~~~i~~-~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~---~~~v~~~a 611 (858)
+ ......+.. .+++++|+.++.++|.+++..|+ ++.|+..........+.+.|++++|+.+++.+ +..+.+.|
T Consensus 696 s--~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~A 773 (810)
T 3now_A 696 S--VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773 (810)
T ss_dssp C--HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHH
T ss_pred C--HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHH
Confidence 1 223344555 89999999999999999999999 99999864333238899999999999999755 68899999
Q ss_pred HHHHHHhh
Q 003008 612 ASILEFIT 619 (858)
Q Consensus 612 ~~~L~~l~ 619 (858)
+.+|.++.
T Consensus 774 l~aL~~ll 781 (810)
T 3now_A 774 TQCLAAAE 781 (810)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988874
No 7
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=379.85 Aligned_cols=506 Identities=18% Similarity=0.143 Sum_probs=417.7
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222 (858)
Q Consensus 144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~ 222 (858)
..|+++.|+.+|+++++.++..|+.+|.+|+.+.+++..+.. .|+++.|+++|++.. ++.++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhh
Confidence 689999999999999999999999999999998888888876 589999999998643 889999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL 301 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl 301 (858)
+..+.+.|+++.|+++|+++++.++..|+++|.||+... ..+..+++.|+++.|+++|+++ .+..+..++.+|+++
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874 5666788899999999999876 345777888999999
Q ss_pred hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccC-CchhhHHHHHHhccCCCCCCccchHHHH
Q 003008 302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQ-GPSKFGANELLLGLNVSDKNANIDEAKM 379 (858)
Q Consensus 302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~a~~aL~nL~~~~~~~~i~~~~~ 379 (858)
+. +++++..+++.|+++. |++++ +..+ ...+..++.+|+|++....++
T Consensus 168 a~~~~~~~~~i~~~g~v~~-Lv~lL----------------------~~~~~~~~~~~a~~~L~nLs~~~~~~------- 217 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQA-LVNIM----------------------RTYTYEKLLWTTSRVLKVLSVCSSNK------- 217 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHH-HHHHH----------------------TTCCCHHHHHHHHHHHHHHTTCTTHH-------
T ss_pred HhcCcHHHHHHHHcCChHH-HHHHH----------------------HcCChHHHHHHHHHHHHHHhcCcccH-------
Confidence 97 7899999999999994 99974 1111 234556888999997544210
Q ss_pred hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 003008 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF 459 (858)
Q Consensus 380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l 459 (858)
..+...++++.|+.++.+++..++..++++|.+++...... .
T Consensus 218 ------------------------------------~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~ 259 (644)
T 2z6h_A 218 ------------------------------------PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--E 259 (644)
T ss_dssp ------------------------------------HHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--C
T ss_pred ------------------------------------HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--h
Confidence 11222457899999999999999999999999987533221 1
Q ss_pred HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008 460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK 538 (858)
Q Consensus 460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 538 (858)
...++++.|+.+|+++++.++..++++|++|+. +++++..+.+.|+++.|+.++...++...+++.+..+|.+++....
T Consensus 260 ~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 260 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence 124789999999999999999999999999998 5788999999999999999998544347899999999999986321
Q ss_pred c-cccccccccCcCcHHHHHhhcCCC-hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHH
Q 003008 539 E-MKSKFYDIPVNGSEKGLDAAESLD-PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASIL 615 (858)
Q Consensus 539 ~-~~~~~~i~~~~~i~~Li~ll~s~d-~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L 615 (858)
+ ...+..+...++++.|+++|.+++ ++++..++ ++.|++.....+ ..+.+.|++|.|+++|.+.+..+|..|+|++
T Consensus 340 ~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al 418 (644)
T 2z6h_A 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418 (644)
T ss_dssp THHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhcc
Confidence 1 122334667889999999999875 68999999 999999888888 8899999999999999888777777666644
Q ss_pred HHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchH
Q 003008 616 EFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINST 695 (858)
Q Consensus 616 ~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 695 (858)
.+-. +
T Consensus 419 ~n~~--------~------------------------------------------------------------------- 423 (644)
T 2z6h_A 419 TQQQ--------F------------------------------------------------------------------- 423 (644)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccch--------h-------------------------------------------------------------------
Confidence 3300 0
Q ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhh
Q 003008 696 HFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIIS 775 (858)
Q Consensus 696 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~ 775 (858)
..+ ..+.++++.++.||.+|+.
T Consensus 424 ------------------------------------------------~~~----------~~~~~v~~~a~~aL~~La~ 445 (644)
T 2z6h_A 424 ------------------------------------------------VEG----------VRMEEIVEGCTGALHILAR 445 (644)
T ss_dssp ------------------------------------------------CCS----------SCHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------------ccc----------ccHHHHHHHHHHHHHHHhc
Confidence 000 0124577889999999986
Q ss_pred cCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHh
Q 003008 776 EGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLR 854 (858)
Q Consensus 776 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~ 854 (858)
.. ++...+.+.|++++|+++|.++++.++..|+.+|.||+.+++.+..+.+.|+++.|..++.++++.+ +.|.++|.
T Consensus 446 ~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~ 523 (644)
T 2z6h_A 446 DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523 (644)
T ss_dssp SH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHH
Confidence 54 3666899999999999999999999999999999999999889999999999999999999999999 88888887
Q ss_pred cCC
Q 003008 855 NLP 857 (858)
Q Consensus 855 ~l~ 857 (858)
++.
T Consensus 524 ~l~ 526 (644)
T 2z6h_A 524 RMS 526 (644)
T ss_dssp HHT
T ss_pred HHh
Confidence 763
No 8
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.9e-36 Score=347.38 Aligned_cols=466 Identities=18% Similarity=0.170 Sum_probs=372.4
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch
Q 003008 144 FSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH 222 (858)
Q Consensus 144 ~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~ 222 (858)
..|+++.|+.+|+++++.++..|+.+|.+|+.+++++..+.. .|+++.|+++|++.+ ++.+++.++.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCchh
Confidence 589999999999999999999999999999998888888876 589999999997542 889999999999999999999
Q ss_pred HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL 301 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl 301 (858)
+..+.+.|+++.|+++++++++.++..++++|.|++.. +..+..+.+.|+++.|+++++++ ...++..++.+|.++
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 45677888999999999999875 455888899999999
Q ss_pred hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccC-CchhhHHHHHHhccCCCCCCccchHHHH
Q 003008 302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQ-GPSKFGANELLLGLNVSDKNANIDEAKM 379 (858)
Q Consensus 302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~a~~aL~nL~~~~~~~~i~~~~~ 379 (858)
+. +++++..+++.|+++ .|++++ +.++ ...+..+..+|+|++.++.++
T Consensus 171 a~~~~~~~~~i~~~~~i~-~L~~ll----------------------~~~~~~~~~~~a~~~L~~l~~~~~~~------- 220 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQ-ALVNIM----------------------RTYTYEKLLWTTSRVLKVLSVCSSNK------- 220 (529)
T ss_dssp HTTCHHHHHHHHHTTHHH-HHHHHH----------------------HHCCCHHHHHHHHHHHHHHTTSTTHH-------
T ss_pred HhCCHHHHHHHHHCCCHH-HHHHHH----------------------HhCChHHHHHHHHHHHHHHhcCcccH-------
Confidence 98 689999999999999 499864 2222 133444788899987554210
Q ss_pred hhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHH
Q 003008 380 NAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLF 459 (858)
Q Consensus 380 ~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l 459 (858)
..+...|+++.|+.++.+++++++..++++|.+++.......
T Consensus 221 ------------------------------------~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~-- 262 (529)
T 1jdh_A 221 ------------------------------------PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-- 262 (529)
T ss_dssp ------------------------------------HHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--
T ss_pred ------------------------------------HHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--
Confidence 112224588999999999999999999999999875433221
Q ss_pred HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCc
Q 003008 460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSK 538 (858)
Q Consensus 460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~ 538 (858)
...|+++.|+.++++++++++..++++|++|+. +++++..+.+.|+++.|+.++..++++..+++.+..+|+|++....
T Consensus 263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence 124789999999999999999999999999998 5779999999999999999998545457899999999999986210
Q ss_pred ccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCC-HHHHHHHHHHHHH
Q 003008 539 EMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSY-PDLQRKAASILEF 617 (858)
Q Consensus 539 ~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~~ 617 (858)
+ ....+ ..+.+.|++|.|+++|.+++ +.++..++++|.|
T Consensus 343 --------------------------~-------------~~~~~-~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~n 382 (529)
T 1jdh_A 343 --------------------------E-------------AEMAQ-NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 382 (529)
T ss_dssp --------------------------T-------------HHHHH-HHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred --------------------------h-------------HHHHH-HHHHHcCChhHHHHHhccccchHHHHHHHHHHHH
Confidence 0 01123 56788899999999999876 5899999999999
Q ss_pred hhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHH
Q 003008 618 ITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHF 697 (858)
Q Consensus 618 l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 697 (858)
++.+++.+..
T Consensus 383 l~~~~~~~~~---------------------------------------------------------------------- 392 (529)
T 1jdh_A 383 LALCPANHAP---------------------------------------------------------------------- 392 (529)
T ss_dssp HTTSGGGHHH----------------------------------------------------------------------
T ss_pred HhcChhhhHH----------------------------------------------------------------------
Confidence 8754333211
Q ss_pred HHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcC
Q 003008 698 IKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEG 777 (858)
Q Consensus 698 ~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 777 (858)
+.+.|++++|+++|.++++++|..|+|++.|.....
T Consensus 393 --------------------------------------------~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~ 428 (529)
T 1jdh_A 393 --------------------------------------------LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428 (529)
T ss_dssp --------------------------------------------HHHTTHHHHHHHHHHHHHHHHC-----------CBT
T ss_pred --------------------------------------------HHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc
Confidence 114567899999999999999999999998832111
Q ss_pred cchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 778 VVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 778 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
|+ ..++++..++.+|++|+.++.++..+.+.|+++.|+.++.++++.+ ..|.++|.++
T Consensus 429 -----------~~----------~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l 487 (529)
T 1jdh_A 429 -----------GV----------RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL 487 (529)
T ss_dssp -----------TB----------CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred -----------cc----------cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHH
Confidence 11 1245667899999999999989999999999999999999999988 7777777765
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.5e-35 Score=337.85 Aligned_cols=402 Identities=18% Similarity=0.200 Sum_probs=312.9
Q ss_pred ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-
Q 003008 98 TFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI- 176 (858)
Q Consensus 98 ~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~- 176 (858)
.+..+.++.|+.+|. ++++.+|..|+++|.+++..+...+..++ +.|+||.|+++|+++++++++.|+++|+||+..
T Consensus 44 ~~~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~-~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 44 NWRQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVR-KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CcccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 356889999999998 88899999999999999987666655555 899999999999999999999999999999984
Q ss_pred -chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc---------------
Q 003008 177 -NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE--------------- 240 (858)
Q Consensus 177 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--------------- 240 (858)
+++|..|++.|+||+|+++|++.. +..+++.++++|+|||.++++|..|++ +++++|++++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence 689999999999999999999742 788999999999999999999999996 57999999872
Q ss_pred ---cCCHHHHHHHHHHHHHHcCCc-CchHHHHhC-CCHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcChhhHHHHH
Q 003008 241 ---DENMKVKEAAGGVLANLALSK-SNHNILVEA-GVIPKLAMLLKAN---VEGSKVIRKEARNALIELAKDDYYRILII 312 (858)
Q Consensus 241 ---~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~-g~i~~Lv~ll~~~---~~~~~~~~~~a~~aL~nl~~~~~~~~~i~ 312 (858)
..+++++++|+++|.||+..+ ++|..+++. |+++.||.++++. .......+++|+++|+|||..-+.. +
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e--~- 276 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE--I- 276 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH--S-
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc--c-
Confidence 225799999999999999876 458888876 5578999999752 1123347899999999999762211 0
Q ss_pred HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHH
Q 003008 313 EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLV 392 (858)
Q Consensus 313 ~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~ 392 (858)
-.... +.+.. .. + . .. ...... .++
T Consensus 277 --~~~~~-~~~~~----------------------~~-~-----~-~~---~~~~~~-------~Gv------------- 301 (584)
T 3l6x_A 277 --PQAER-YQEAA----------------------PN-V-----A-NN---TGTSPA-------RGY------------- 301 (584)
T ss_dssp --TTCCC-----------------------------------------------CCC-------CGG-------------
T ss_pred --cchhh-hhhhc----------------------cc-c-----c-cc---ccccCc-------hhH-------------
Confidence 00000 11100 00 0 0 00 000000 011
Q ss_pred HhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC-----hhhHHHHHHcCcHH
Q 003008 393 RIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILG-LEDERAIARAAESIADISIN-----EHMRMLFKEAGAIK 466 (858)
Q Consensus 393 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~~-----~~~~~~l~~~g~i~ 466 (858)
..+...+.++.|+.+|. +.++.+++.|+++|+|++.+ ...+..+.+.++++
T Consensus 302 -----------------------e~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 302 -----------------------ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp -----------------------GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred -----------------------HHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 22222347889999995 56899999999999997643 23455666789999
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc------cHHHHHHHHHHHHHhcCCCccc
Q 003008 467 YLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI------SESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 467 ~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~------~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
.|+.||.+++..+++.|+++|+||+.++.++..| ..|+++.|+.+|..++. ..++...++++|.|+..
T Consensus 359 ~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a----- 432 (584)
T 3l6x_A 359 AIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA----- 432 (584)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc-----
Confidence 9999999999999999999999999988888777 67999999999986532 24556666666666654
Q ss_pred ccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCC--CHHHHHHHHHHHHHh
Q 003008 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS--YPDLQRKAASILEFI 618 (858)
Q Consensus 541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~~l 618 (858)
.+...+ +.+.+.|+||.|+++++++ .+.+++.|+++|.++
T Consensus 433 -------------------------------------~~~~~~-~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 433 -------------------------------------ENLEAA-KKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp -------------------------------------TCHHHH-HHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred -------------------------------------CCHHHH-HHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 233445 7889999999999999986 889999999999999
Q ss_pred hcCCcchHHH
Q 003008 619 TIIDPSMDTI 628 (858)
Q Consensus 619 ~~~~~~~~~~ 628 (858)
..+.+.+..+
T Consensus 475 ~~~~elr~~~ 484 (584)
T 3l6x_A 475 WGYKELRKPL 484 (584)
T ss_dssp HTSHHHHHHH
T ss_pred HcCHHHHHHH
Confidence 9988887776
No 10
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.5e-34 Score=330.69 Aligned_cols=405 Identities=18% Similarity=0.169 Sum_probs=336.1
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcc-cHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcC-
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKK-CIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSI- 176 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~-~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~- 176 (858)
....++.+++.+. |+|++.|..|+..++++.+.+.+ .++.++ +.|+||.|+++|+++ +++++..|+|+|.||+..
T Consensus 55 ~~~~i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii-~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 55 VNWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNII-RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp SSCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHH-HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred hhhhHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHH-HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 3456999999997 99999999999999987654433 245677 799999999999754 689999999999999775
Q ss_pred chhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCC-----HHHHHHH
Q 003008 177 NVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDEN-----MKVKEAA 250 (858)
Q Consensus 177 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~a 250 (858)
++++..+++.|+||.|+.+|+++ ++.+++.|+++|+||+.+ +.+|..+.+.|++++|+.++..++ ..+...+
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a 210 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHH
Confidence 47999999999999999999998 999999999999999976 567899999999999999998753 4578899
Q ss_pred HHHHHHHcCCcCchHH-HHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCcccccccccccc
Q 003008 251 GGVLANLALSKSNHNI-LVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY-YRILIIEEGLVPVPMVGADAYK 328 (858)
Q Consensus 251 ~~~L~nL~~~~~~~~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~-~~~~i~~~g~v~~~Lv~ll~~~ 328 (858)
+++|.|++.+...... ....|++|.|+.++++. .+.++..++++|++|+.++. ....+++.|+
T Consensus 211 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~------------ 275 (510)
T 3ul1_B 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEMVVKKGV------------ 275 (510)
T ss_dssp HHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC------------
T ss_pred HHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHHhhchhhhHHHHHhccc------------
Confidence 9999999998655543 34468899999999875 44588899999999987543 3333334443
Q ss_pred cCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCC
Q 003008 329 SFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSE 408 (858)
Q Consensus 329 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~ 408 (858)
T Consensus 276 -------------------------------------------------------------------------------- 275 (510)
T 3ul1_B 276 -------------------------------------------------------------------------------- 275 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHh-cCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHH
Q 003008 409 FPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHAL 487 (858)
Q Consensus 409 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL 487 (858)
++.|+.+|.+++..++..++++|+++ +.+++.+..+++.|+++.|+.+|+++++.++..|+|+|
T Consensus 276 ---------------i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 276 ---------------VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp ---------------HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred ---------------chhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 44455666677788999999999995 56788889999999999999999999999999999999
Q ss_pred HHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhH
Q 003008 488 ERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSI 566 (858)
Q Consensus 488 ~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v 566 (858)
+||+. +++.+..+.+.|+++.|+.++..++ ..+++.|+++|+|++..+ +......+.+.|++++|+++|.++|+++
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~~Aa~aL~Nl~~~~-~~~~~~~L~~~g~i~~L~~LL~~~d~~i 417 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKEAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAKDTKI 417 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHC-CHHHHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC--HHHHHHHHHHHHHHHccC-CHHHHHHHHHCCCHHHHHHHhcCCCHHH
Confidence 99998 7888899999999999999999555 899999999999998632 2333456788999999999999999999
Q ss_pred HHHHH-HHHHhhccc------cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 567 ELTGN-VIEAAVSET------TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 567 ~~~a~-~l~~L~~~~------~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
...++ +|.++.... ......+.+.|+++.+-.|..+++.+|.+.|..+|......
T Consensus 418 ~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 418 IQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999 999886421 11114567899999999999999999999999999877643
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.1e-34 Score=330.54 Aligned_cols=416 Identities=16% Similarity=0.177 Sum_probs=310.4
Q ss_pred hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--c
Q 003008 185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS--K 261 (858)
Q Consensus 185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~ 261 (858)
..+.||.||++|+++ ++.++..|+++|.|||. ++++|..+++.|+||+|+++|+++++++++.|+++|.||+.. +
T Consensus 46 ~~~~i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 46 RQPELPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred ccccHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 357899999999998 99999999999999996 678999999999999999999999999999999999999984 7
Q ss_pred CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCC
Q 003008 262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP 341 (858)
Q Consensus 262 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~ 341 (858)
++|..+++.|+|+.||++|+++. +..+++.++.+||||+.+++++..|++ |+++ +|++++.
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~--~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp-~Lv~LL~--------------- 184 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKAR--DMDLTEVITGTLWNLSSHDSIKMEIVD-HALH-ALTDEVI--------------- 184 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCC--SHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHH-HHHHHTH---------------
T ss_pred HHHHHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchhhHHHHh-ccHH-HHHHHHh---------------
Confidence 89999999999999999998743 345899999999999999999999996 5689 5988630
Q ss_pred CcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc
Q 003008 342 DGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI 421 (858)
Q Consensus 342 ~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 421 (858)
... ...... . . . .
T Consensus 185 -----~p~---------------sg~~~~-------~------------~--------~-----------~--------- 197 (584)
T 3l6x_A 185 -----IPH---------------SGWERE-------P------------N--------E-----------D--------- 197 (584)
T ss_dssp -----HHH---------------HCCC-----------------------------------------------------
T ss_pred -----ccc---------------cccccc-------c------------c--------c-----------c---------
Confidence 000 000000 0 0 0 0
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHc-CcHHHHHHhhcC------CcHHHHHHHHHHHHHhhcC
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEA-GAIKYLVKLLDH------SSDAVRLATTHALERLSVS 493 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~-g~i~~Lv~LL~~------~~~~v~~~a~~aL~~Ls~~ 493 (858)
-.+..+++++++.+|+++|.|++. +++.|+.+++. |+++.|+.++++ .+...++.|+++|+||+..
T Consensus 198 ------~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 198 ------CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred ------ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 001245678999999999999875 45669999985 556799999874 4578999999999999974
Q ss_pred hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHHHH-
Q 003008 494 RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELTGN- 571 (858)
Q Consensus 494 ~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~- 571 (858)
.+... -..+. +..... .++ .. . ......+. ..++..++++.++.++. +.+++++.+|+
T Consensus 272 ~~~e~--~~~~~---~~~~~~--~~~------~~-~-~~~~~~Gv-----e~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~ 331 (584)
T 3l6x_A 272 VHREI--PQAER---YQEAAP--NVA------NN-T-GTSPARGY-----ELLFQPEVVRIYISLLKESKTPAILEASAG 331 (584)
T ss_dssp HHHHS--TTCCC---------------------------CCCCGG-----GGGGSHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred ccccc--cchhh---hhhhcc--ccc------cc-c-cccCchhH-----HHHhcccHHHHHHHHHccCCCHHHHHHHHH
Confidence 21100 00000 000000 000 00 0 01111111 12333445667777774 45677777777
Q ss_pred HHHHhhccc-----cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhc
Q 003008 572 VIEAAVSET-----TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKAL 646 (858)
Q Consensus 572 ~l~~L~~~~-----~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL 646 (858)
+|.||+... ..+ ..+.+.+++|.|++||.+++..+++.|+++|.||+.+...+..|
T Consensus 332 AL~nL~ag~~~~~~~~~-~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I------------------ 392 (584)
T 3l6x_A 332 AIQNLCAGRWTYGRYIR-SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI------------------ 392 (584)
T ss_dssp HHHHHHSSCSHHHHHHH-HHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH------------------
T ss_pred HHHHHHcCCccccHHHH-HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH------------------
Confidence 777775432 223 46677899999999999999999999999999998765443322
Q ss_pred cCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcc
Q 003008 647 EDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSC 726 (858)
Q Consensus 647 ~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~ 726 (858)
T Consensus 393 -------------------------------------------------------------------------------- 392 (584)
T 3l6x_A 393 -------------------------------------------------------------------------------- 392 (584)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccchhhhhhhcchHHHHHHhccC--------CHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHh
Q 003008 727 LSGPDQDFENPINMEVTLYEAIPRLIEQIKSF--------SSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLI 798 (858)
Q Consensus 727 ~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~--------~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL 798 (858)
..|++|+||++|.++ +.+++..|+++|.||+..+.. +.+.+.+.|+|++|+++|
T Consensus 393 -----------------~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~-~~~~I~~~g~I~~Lv~LL 454 (584)
T 3l6x_A 393 -----------------GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE-AAKKLRETQGIEKLVLIN 454 (584)
T ss_dssp -----------------HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHH
T ss_pred -----------------HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH-HHHHHHHCCChHHHHHHH
Confidence 234567777777644 478899999999999987765 888999999999999999
Q ss_pred hcC--ChHHHHHHHHHHHhhhcCccchHHHHHcCc
Q 003008 799 EEG--SNRAVEAGLAILYNLSMDSENHSAIIAAGA 831 (858)
Q Consensus 799 ~~~--~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~ 831 (858)
+++ .+.+++.|+.+|+||..+.++|..+.+.|.
T Consensus 455 ~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 455 KSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred hCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 986 889999999999999999999999998873
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3e-33 Score=324.66 Aligned_cols=403 Identities=18% Similarity=0.164 Sum_probs=334.9
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCc-ccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc-
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGK-KCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN- 177 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~-~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~- 177 (858)
...++.++..+. |+|++.+..|+..++++.+.+. ...+.++ +.|++|.|+++|..+ ++.++..|+|+|.||+..+
T Consensus 75 ~~~l~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii-~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 75 NWSVEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNII-RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp SCCHHHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHH-HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHH-HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 346899999997 9999999999999988754433 2345666 799999999999754 6889999999999998865
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCC-----HHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDEN-----MKVKEAAG 251 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~-----~~~~~~a~ 251 (858)
+++..+++.|+||.|+.+|.++ ++.+++.|+++|+||+.+ +++|..+.+.|++++|+.++..++ ..+...++
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 6888999999999999999998 999999999999999975 578999999999999999998653 45788999
Q ss_pred HHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCccccccccccccc
Q 003008 252 GVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YYRILIIEEGLVPVPMVGADAYKS 329 (858)
Q Consensus 252 ~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~~~~~i~~~g~v~~~Lv~ll~~~~ 329 (858)
++|.|++.+..... .....|++|.|+.+++++ .+.++..++++|.+++.++ +....+++.|+
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~------------- 294 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLADSCWAISYLTDGPNERIEMVVKKGV------------- 294 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTC-------------
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---cHHHHHHHHHHHHHhhhhhhhhHHHHHhccc-------------
Confidence 99999998865544 334468899999999875 4558889999999998754 33333444444
Q ss_pred CCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCC
Q 003008 330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEF 409 (858)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~ 409 (858)
T Consensus 295 -------------------------------------------------------------------------------- 294 (529)
T 3tpo_A 295 -------------------------------------------------------------------------------- 294 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHH
Q 003008 410 PIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE 488 (858)
Q Consensus 410 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~ 488 (858)
++.|+.+|.+++..++..++++|++++ .+++.+..+++.|+++.|+.+|+++++.++..|+|+|+
T Consensus 295 --------------i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 295 --------------VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp --------------HHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------------hHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555666777888999999999954 67888999999999999999999999999999999999
Q ss_pred Hhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHH
Q 003008 489 RLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIE 567 (858)
Q Consensus 489 ~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~ 567 (858)
||+. ++..+..+.+.|+++.|+.++.+++ ..++..|+++|+|++..+ +......+.+.|++++|+++|.++|+++.
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~nl~~~~-~~~~~~~l~~~g~i~~L~~LL~~~d~~i~ 437 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSKAD--FKTQKAAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAKDTKII 437 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcCCC--HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCcCHHHHHHHhcCCCHHHH
Confidence 9998 7788889999999999999999555 889999999999998632 23334567889999999999999999999
Q ss_pred HHHH-HHHHhhccc------cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 568 LTGN-VIEAAVSET------TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 568 ~~a~-~l~~L~~~~------~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
..++ +|.++.... ......+.+.|++..+-.|..+++.+|.+.|..+|.....
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999 999886321 1111456789999999999999999999999999977654
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.3e-34 Score=322.45 Aligned_cols=418 Identities=17% Similarity=0.175 Sum_probs=305.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhHH
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYRD 181 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~~ 181 (858)
.+|.|+.+|+ ++++++|..|+++|.+++.+++..+..++ +.|++|.|+++|++++++++..|+++|+||+.. +++|.
T Consensus 3 ~l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVY-QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHH-HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999998 88889999999999999987776544555 899999999999999999999999999999986 68999
Q ss_pred HHHhcCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc--------cC--------CH
Q 003008 182 LVAECGAIEEITGLLT-RPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE--------DE--------NM 244 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~--------~~--------~~ 244 (858)
.|++.|+||.|+++|+ ++ ++.+++.++++|+|||.++++|..+++ |++++|+++|. ++ ++
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~ 157 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccH
Confidence 9999999999999999 76 999999999999999999989999999 99999999993 22 45
Q ss_pred HHHHHHHHHHHHHcCCcCchHHHHhC-CCHHHHHHHHccCC---CCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccc
Q 003008 245 KVKEAAGGVLANLALSKSNHNILVEA-GVIPKLAMLLKANV---EGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVP 320 (858)
Q Consensus 245 ~~~~~a~~~L~nL~~~~~~~~~i~~~-g~i~~Lv~ll~~~~---~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~ 320 (858)
++...|+|+|+||+.+++++..+++. |+++.|+.+|+++. .......+.++.+|+||+...+.. ...+.. .
T Consensus 158 ~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~----~~~~~~-~ 232 (457)
T 1xm9_A 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE----VPTRYR-Q 232 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH----SCCHHH-H
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhcc----Ccchhh-h
Confidence 67779999999999998888899997 99999999998620 001226789999999998643211 000000 0
Q ss_pred cccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhccccc
Q 003008 321 MVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESE 400 (858)
Q Consensus 321 Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~ 400 (858)
+...+ +.. ........++.+..... ...+.. + . .
T Consensus 233 ~~~~~----------------------~~~--~~~~~~~~~~~~~~~~~-----~~~~~~----------~---~---~- 266 (457)
T 1xm9_A 233 LEYNA----------------------RNA--YTEKSSTGCFSNKSDKM-----MNNNYD----------C---P---L- 266 (457)
T ss_dssp HHHTC-------------------------------------------------------------------------C-
T ss_pred ccccc----------------------ccc--cccccccchhhccchhh-----hhcccc----------C---C---c-
Confidence 00000 000 00000011111111000 000000 0 0 0
Q ss_pred CCCCCCCCCCcccccccccccccHHHHHHHhCC-CCHHHHHHHHHHHHHhcC-Chh----h-HHHHHHcCcHHHHHHhhc
Q 003008 401 DGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL-EDERAIARAAESIADISI-NEH----M-RMLFKEAGAIKYLVKLLD 473 (858)
Q Consensus 401 ~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~l~~-~~~----~-~~~l~~~g~i~~Lv~LL~ 473 (858)
......+. ....+...++++.|+.+|.+ +++.+++.|+++|+|++. +.+ . +..+.+.|+++.|++||.
T Consensus 267 ----~~~~~~~~-~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~ 341 (457)
T 1xm9_A 267 ----PEEETNPK-GSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341 (457)
T ss_dssp ----CCCCSSCC-GGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT
T ss_pred ----cccccCch-HHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh
Confidence 00000111 11344445689999999964 568999999999999764 322 2 333447999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCc----cHHHHHHHHHHHHHhcCCCcccccccccccC
Q 003008 474 HSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDI----SESLMEKTLDILGRILDPSKEMKSKFYDIPV 549 (858)
Q Consensus 474 ~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~ 549 (858)
+++.+++..|+++|.||+.+++++..+.+ |++++|+++|..++. ++++...++.+|.++..
T Consensus 342 ~~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~-------------- 406 (457)
T 1xm9_A 342 SGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA-------------- 406 (457)
T ss_dssp CSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT--------------
T ss_pred CCCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh--------------
Confidence 99999999999999999998888777754 799999999986542 23455556666666554
Q ss_pred cCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcch
Q 003008 550 NGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPSM 625 (858)
Q Consensus 550 ~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~ 625 (858)
.+.+.. ..+.+.|+++.|++++.++ +..+++.|.++|.++..+.+.+
T Consensus 407 ----------------------------~~~~~~-~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~ 454 (457)
T 1xm9_A 407 ----------------------------SQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ 454 (457)
T ss_dssp ----------------------------TCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred ----------------------------cCHHHH-HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhh
Confidence 112223 7788999999999999999 9999999999999998877654
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=5.8e-33 Score=320.44 Aligned_cols=403 Identities=18% Similarity=0.231 Sum_probs=328.1
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCC-cCc
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALS-KSN 263 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~-~~~ 263 (858)
.|+.+|+.+++. |++.+..|+..++.|.+.+. ....+++.|+||.|+++|++. ++.++..|+|+|.||+.. ++.
T Consensus 58 ~i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~ 135 (510)
T 3ul1_B 58 SVEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 135 (510)
T ss_dssp CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 489999999998 99999999999999754433 367899999999999999755 689999999999999875 567
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD 342 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~ 342 (858)
+..+++.|+||.|+++|+++ .+.+++.|+++|+|++.+ +.+|..+++.|+++ +|+.++.
T Consensus 136 ~~~vv~~GaIp~Lv~lL~s~---~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~-~Ll~lL~---------------- 195 (510)
T 3ul1_B 136 TKAVVDGGAIPAFISLLASP---HAHISEQAVWALGNIAGDGSAFRDLVIKHGAID-PLLALLA---------------- 195 (510)
T ss_dssp HHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHHTC----------------
T ss_pred HHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChH-HHHHHHH----------------
Confidence 77899999999999999875 456999999999999985 78899999999999 5888641
Q ss_pred cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008 343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID 422 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 422 (858)
..+ .
T Consensus 196 ------~~~-----------------~----------------------------------------------------- 199 (510)
T 3ul1_B 196 ------VPD-----------------L----------------------------------------------------- 199 (510)
T ss_dssp ------SSC-----------------G-----------------------------------------------------
T ss_pred ------hcc-----------------c-----------------------------------------------------
Confidence 000 0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIM 500 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l 500 (858)
......++..++++|.+++.+.. ........|+++.|+.+|.+++++++..++++|.+|+. +.+....+
T Consensus 200 ---------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i 270 (510)
T 3ul1_B 200 ---------STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 270 (510)
T ss_dssp ---------GGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred ---------hhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHH
Confidence 00012234456677777554332 22233346789999999999999999999999999998 45566788
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET 580 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~ 580 (858)
.+.|+++.|+.++..++ ..++..+..+|+|++.. +.
T Consensus 271 ~~~g~i~~Lv~lL~~~~--~~v~~~al~aL~nl~~~------------------------------------------~~ 306 (510)
T 3ul1_B 271 VKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTG------------------------------------------TD 306 (510)
T ss_dssp HTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTS------------------------------------------CH
T ss_pred HhcccchhhhhhhcCCC--hhhhhHHHHHHHHhhcC------------------------------------------CH
Confidence 89999999999998554 78899999999998761 11
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCc
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK 660 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~ 660 (858)
... ..+.+.|+++.|+.+|++++..++..|+++|.|++.+.+.....
T Consensus 307 ~~~-~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~-------------------------------- 353 (510)
T 3ul1_B 307 EQT-QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ-------------------------------- 353 (510)
T ss_dssp HHH-HHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH--------------------------------
T ss_pred HHH-HHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH--------------------------------
Confidence 222 67788999999999999999999999999999997644322111
Q ss_pred cchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchh
Q 003008 661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINM 740 (858)
Q Consensus 661 ~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 740 (858)
T Consensus 354 -------------------------------------------------------------------------------- 353 (510)
T 3ul1_B 354 -------------------------------------------------------------------------------- 353 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC-
Q 003008 741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD- 819 (858)
Q Consensus 741 ~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~- 819 (858)
+.+.|++++|+.+|.+++.++|+.|++||.|++.....+++..+++.|++++|+++|++++++++..++.+|.||...
T Consensus 354 -v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 354 -VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp -HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 124568999999999999999999999999999887776778999999999999999999999999999999998642
Q ss_pred ------ccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008 820 ------SENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN 855 (858)
Q Consensus 820 ------~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~ 855 (858)
+..+..+.+.|++..|..|..+++.++ ++|+..|.+
T Consensus 433 ~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475 (510)
T ss_dssp HTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 223345779999999999999999999 999998864
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=7.2e-34 Score=317.45 Aligned_cols=363 Identities=19% Similarity=0.235 Sum_probs=286.3
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC------------CHHHHHHHHH
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE------------SSAACEAAAG 168 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~------------~~~~~~~a~~ 168 (858)
...++.++..+. +.|++ ...+.|..++.+.+.+ ..+++.|++|.|+++|+.. +++.+..|+|
T Consensus 31 ~~~~~~l~~~~~-~~~~~---~~~~~ll~~~~~~~~~--~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~ 104 (458)
T 3nmz_A 31 VEMVYSLLSMLG-THDKD---DMSRTLLAMSSSQDSC--ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104 (458)
T ss_dssp ---------------CCH---HHHHHHHHHHSSTTHH--HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCHH---HHHHHHHHHHcCCcHH--HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHH
Confidence 344677888887 66644 4778899999988864 3445899999999999863 3799999999
Q ss_pred HHHHhhcCc-hhHHHHHhcCcH----------HHHHHHhcCCCCCHH-----HHH-------HHHHHHHHhccCcchHHH
Q 003008 169 LLRSISSIN-VYRDLVAECGAI----------EEITGLLTRPSLTSE-----VKE-------QSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 169 aL~nLs~~~-~~~~~i~~~g~i----------~~Lv~lL~~~~~~~~-----~~~-------~a~~~L~nLs~~~~~~~~ 225 (858)
+|.||+... +......+.|++ +.+++++++...+.+ +++ .|+++|.|++.++++|..
T Consensus 105 al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~ 184 (458)
T 3nmz_A 105 ALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 184 (458)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999998754 566666777777 667777776520111 334 899999999999999999
Q ss_pred HHhCCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHHcCCcC-chHHHHh-CCCHHHHHHHHccCCCCCHHHHH
Q 003008 226 IANTDILPLLIKSLED-----------ENMKVKEAAGGVLANLALSKS-NHNILVE-AGVIPKLAMLLKANVEGSKVIRK 292 (858)
Q Consensus 226 i~~~g~i~~Lv~ll~~-----------~~~~~~~~a~~~L~nL~~~~~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~ 292 (858)
+++.|++++|+.+|.. .++.+++.|+|+|.||+.+++ ++..+.. .|+||.|+++|+++ .+.+++
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~ 261 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE---SEDLQQ 261 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS---CHHHHH
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC---CHHHHH
Confidence 9999999999999952 246789999999999998875 5556654 45699999999875 455999
Q ss_pred HHHHHHHHHhcC--hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCC
Q 003008 293 EARNALIELAKD--DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDK 370 (858)
Q Consensus 293 ~a~~aL~nl~~~--~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~ 370 (858)
.|+++|+||+.. +++|..+++.|+++ +|++++
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~-~LV~lL--------------------------------------------- 295 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVK-ALMECA--------------------------------------------- 295 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHH-HHHHHH---------------------------------------------
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHH-HHHHHH---------------------------------------------
Confidence 999999999983 67889999999888 577742
Q ss_pred CccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 003008 371 NANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS 450 (858)
Q Consensus 371 ~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 450 (858)
+.++++.++..|+.+|+|++
T Consensus 296 ------------------------------------------------------------l~s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 296 ------------------------------------------------------------LEVKKESTLKSVLSALWNLS 315 (458)
T ss_dssp ------------------------------------------------------------TTCCSHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------hcCCCHHHHHHHHHHHHHHc
Confidence 12234567788999999988
Q ss_pred C-ChhhHHHHH-HcCcHHHHHHhhcCCcH----HHHHHHHHHHHHhhc----ChhHHHHHHHcCChHHHHHhhcCCCccH
Q 003008 451 I-NEHMRMLFK-EAGAIKYLVKLLDHSSD----AVRLATTHALERLSV----SRGVCQIMEAEGVVHPLVNTLKNLDISE 520 (858)
Q Consensus 451 ~-~~~~~~~l~-~~g~i~~Lv~LL~~~~~----~v~~~a~~aL~~Ls~----~~~~~~~l~~~g~i~~Li~lL~~~~~~~ 520 (858)
. +++++..+. ..|+++.|+.+|.++++ .+++.|+++|+||+. +++++..+.+.|+++.|+.+|+.++ .
T Consensus 316 ~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~--~ 393 (458)
T 3nmz_A 316 AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS--L 393 (458)
T ss_dssp HHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSC--H
T ss_pred cCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCC--h
Confidence 6 888888888 79999999999987764 599999999999994 8999999999999999999998555 7
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhh
Q 003008 521 SLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIM 600 (858)
Q Consensus 521 ~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL 600 (858)
.+++.|+++|+|++.. +.+.+ ..+.+.|++|+|+++|
T Consensus 394 ~v~~~A~~aL~nLa~~------------------------------------------~~~~~-~~i~~~G~I~~Lv~LL 430 (458)
T 3nmz_A 394 TIVSNACGTLWNLSAR------------------------------------------NPKDQ-EALWDMGAVSMLKNLI 430 (458)
T ss_dssp HHHHHHHHHHHHHHSS------------------------------------------CHHHH-HHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcC------------------------------------------CHHHH-HHHHHCCCHHHHHHHH
Confidence 8999999999999861 22334 7788999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCc
Q 003008 601 KTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 601 ~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
++++..+++.|+++|.||+.+++
T Consensus 431 ~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 431 HSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHTCCS
T ss_pred hCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998754
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.7e-32 Score=315.50 Aligned_cols=403 Identities=18% Similarity=0.226 Sum_probs=328.7
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCc-Cc
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSK-SN 263 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~-~~ 263 (858)
.++.+++.+.+. +++.+..|+..+++|-+.+ .....+++.|++|.|+++|... ++.++..|+|+|.||+.+. +.
T Consensus 77 ~l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 77 SVEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 589999999998 9999999999999874333 2467889999999999999755 6899999999999999875 45
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCC
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPD 342 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~ 342 (858)
+..+++.|++|.|+.+|+++ .+.+++.|+++|+||+. ++.+|..+++.|+++ +|+.++.
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~---~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~-~Ll~lL~---------------- 214 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASP---HAHISEQAVWALGNIAGAGSAFRDLVIKHGAID-PLLALLA---------------- 214 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHTTC----------------
T ss_pred HHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcH-HHHHHHh----------------
Confidence 56899999999999999876 45599999999999998 579999999999999 6888641
Q ss_pred cchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccc
Q 003008 343 GTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWID 422 (858)
Q Consensus 343 ~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 422 (858)
..+ .
T Consensus 215 ------~~~-----------------~----------------------------------------------------- 218 (529)
T 3tpo_A 215 ------VPD-----------------L----------------------------------------------------- 218 (529)
T ss_dssp ------SSC-----------------G-----------------------------------------------------
T ss_pred ------ccc-----------------h-----------------------------------------------------
Confidence 000 0
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIM 500 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l 500 (858)
......++..++++|.+++.+.. ........|+++.|+.+|.+++++++..++|+|.+++. +.+....+
T Consensus 219 ---------~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v 289 (529)
T 3tpo_A 219 ---------STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 289 (529)
T ss_dssp ---------GGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred ---------hHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 00012244566677777554332 22333446889999999999999999999999999998 55667788
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET 580 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~ 580 (858)
.+.|+++.|+.+|.+++ ..++..+..+|+|++.. +.
T Consensus 290 ~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~nl~~~------------------------------------------~~ 325 (529)
T 3tpo_A 290 VKKGVVPQLVKLLGATE--LPIVTPALRAIGNIVTG------------------------------------------TD 325 (529)
T ss_dssp HTTTCHHHHHHHHTCSC--HHHHHHHHHHHHHHTTS------------------------------------------CH
T ss_pred HhccchHHHHHHhcCCC--hhHHHHHHHHHHHHHcc------------------------------------------ch
Confidence 89999999999998554 88889999999998761 11
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCc
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK 660 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~ 660 (858)
... ..+.+.|+++.|+.+|+++++.++..|+++|.|++.+.+.....
T Consensus 326 ~~~-~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~-------------------------------- 372 (529)
T 3tpo_A 326 EQT-QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ-------------------------------- 372 (529)
T ss_dssp HHH-HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH--------------------------------
T ss_pred HHH-HHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH--------------------------------
Confidence 222 67788999999999999999999999999999997644322111
Q ss_pred cchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchh
Q 003008 661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINM 740 (858)
Q Consensus 661 ~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 740 (858)
T Consensus 373 -------------------------------------------------------------------------------- 372 (529)
T 3tpo_A 373 -------------------------------------------------------------------------------- 372 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC-
Q 003008 741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD- 819 (858)
Q Consensus 741 ~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~- 819 (858)
+.+.|++|+|+.+|.+++.++|..|++||+|++.....+++..+++.|+|++|+++|.+++++++..++.+|.||...
T Consensus 373 -v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 373 -VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp -HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred -HHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 124578999999999999999999999999999887776788999999999999999999999999999999998632
Q ss_pred ------ccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhc
Q 003008 820 ------SENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRN 855 (858)
Q Consensus 820 ------~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~ 855 (858)
+..+..+.+.|++..|..|..+++.++ ++|+..|.+
T Consensus 452 ~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 494 (529)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHH
T ss_pred HhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 223445789999999999999999999 999988864
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=7.8e-32 Score=313.58 Aligned_cols=406 Identities=18% Similarity=0.171 Sum_probs=339.7
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCc-ccHHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhhcC-c
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGK-KCIDYIMQFSGCINLTVNLLRSES-SAACEAAAGLLRSISSI-N 177 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~-~~~~~ii~~~g~i~~Li~lL~~~~-~~~~~~a~~aL~nLs~~-~ 177 (858)
...++.++.+|. ++|+.++..|+++|.+++.... ..++.++ +.|++|.|+.+|.+++ +.++..|+++|.+|+.. +
T Consensus 73 ~~~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~-~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 73 LESLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVI-QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp --CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHH-HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHH-HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 456999999997 8899999999999999976554 3344555 7999999999999986 99999999999999986 5
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLA 255 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~ 255 (858)
+++..+.+.|+++.|+.+|+++ ++.+++.|+++|+||+.+ +.++..+.+.|++++|+.++ .+.++.++..++++|.
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7999999999999999999997 999999999999999966 55788999999999999999 5668999999999999
Q ss_pred HHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhh-HHHHHHcCCcccccccccccccCCccC
Q 003008 256 NLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY-RILIIEEGLVPVPMVGADAYKSFRPEL 334 (858)
Q Consensus 256 nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~-~~~i~~~g~v~~~Lv~ll~~~~~~~~l 334 (858)
+|+............|+++.|+.+++++ .+.++..++++|.+++..+.. ...+++.|+
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~------------------ 287 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLIHSN---DEEVLTDACWALSYLSDGTNDKIQAVIEAGV------------------ 287 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTC------------------
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCH------------------
Confidence 9998865445555689999999999765 455888999999999875432 233444444
Q ss_pred CCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccc
Q 003008 335 HSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQ 414 (858)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~ 414 (858)
T Consensus 288 -------------------------------------------------------------------------------- 287 (528)
T 4b8j_A 288 -------------------------------------------------------------------------------- 287 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCC-cHHHHHHHHHHHHHhhc
Q 003008 415 LTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHS-SDAVRLATTHALERLSV 492 (858)
Q Consensus 415 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~ 492 (858)
++.|+.+|.++++.++..|+++|++++ .++..+..+++.|+++.|+.+|.++ ++.++..|+++|+||+.
T Consensus 288 ---------v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 288 ---------CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp ---------HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 444555566667788999999999966 5777888899999999999999998 89999999999999997
Q ss_pred -ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 493 -SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 493 -~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
+++....+.+.|+++.|+.+|..+ +..++..++++|.+++..+ +......+.+.++++.|+.++.++|++++..++
T Consensus 359 ~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~-~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 359 GNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGG-SHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 677788899999999999999855 4899999999999998732 233444566789999999999999999999999
Q ss_pred -HHHHhhccccc-----------hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 572 -VIEAAVSETTT-----------SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 572 -~l~~L~~~~~~-----------~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+|.+++..... .+..+.+.|+++.+..+..+.+++++..|..+|.++....+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999754322 22667789999999999999999999999999998876443
No 18
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=8.2e-33 Score=314.28 Aligned_cols=413 Identities=15% Similarity=0.137 Sum_probs=305.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHH
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRL 224 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~ 224 (858)
.+|.|+.+|++++++++..|+++|++|+.++ +++..+.+.|+||.|+++|+++ ++.+++.|+++|.||+.+ +++|.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP--NQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5899999999999999999999999999765 4688999999999999999987 999999999999999976 88999
Q ss_pred HHHhCCCHHHHHHHHc-cCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 225 KIANTDILPLLIKSLE-DENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 225 ~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
.+++.|++++|+++|+ ++++++++.++|+|+||+.++++|..+++ |++|.|+++|.... +
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~-----------------s- 141 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPF-----------------S- 141 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHH-----------------H-
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccc-----------------c-
Confidence 9999999999999999 88999999999999999999999999999 99999999984310 0
Q ss_pred ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhh
Q 003008 304 DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMV 383 (858)
Q Consensus 304 ~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li 383 (858)
|.-..+-.+ .
T Consensus 142 -----------~~~~~~~~~---------------------------------------------~-------------- 151 (457)
T 1xm9_A 142 -----------GWCDGNSNM---------------------------------------------S-------------- 151 (457)
T ss_dssp -----------TCC------------------------------------------------------------------
T ss_pred -----------ccccCccch---------------------------------------------h--------------
Confidence 000000000 0
Q ss_pred hhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHc-
Q 003008 384 GRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEA- 462 (858)
Q Consensus 384 ~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~- 462 (858)
-...+.+++..|+++|+|++.+++++..+.+.
T Consensus 152 -----------------------------------------------~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~ 184 (457)
T 1xm9_A 152 -----------------------------------------------REVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184 (457)
T ss_dssp -------------------------------------------------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTST
T ss_pred -----------------------------------------------cccccHHHHHHHHHHHHHHccCHHHHHHHHHcC
Confidence 00134567889999999988778999999997
Q ss_pred CcHHHHHHhhcC------CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCC-----------CccHHHHHH
Q 003008 463 GAIKYLVKLLDH------SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNL-----------DISESLMEK 525 (858)
Q Consensus 463 g~i~~Lv~LL~~------~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~-----------~~~~~~~~~ 525 (858)
|+++.|+.+|++ .+..+++.++++|+||+...+... ..+...+...++.. ......+..
T Consensus 185 g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (457)
T 1xm9_A 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV----PTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260 (457)
T ss_dssp THHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS----CCHHHHHHHTC-----------------------
T ss_pred CCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccC----cchhhhcccccccccccccccchhhccchhhhhc
Confidence 999999999985 345688899999999985321100 00000000000000 000000000
Q ss_pred HHHHHH----HhcCCCcccccccccccCcCcHHHHHhhcC-CChhHHHHHH-HHHHhhccccc------hhhhHhhccch
Q 003008 526 TLDILG----RILDPSKEMKSKFYDIPVNGSEKGLDAAES-LDPSIELTGN-VIEAAVSETTT------SYGKVLDSVFI 593 (858)
Q Consensus 526 a~~~L~----~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-~d~~v~~~a~-~l~~L~~~~~~------~~~~i~~~g~i 593 (858)
. .-+. .-...+ ...++..++++.++.+|.+ .+++++..++ +|.|++..... + ..+.+.|++
T Consensus 261 ~-~~~~~~~~~~~~~~-----~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~-~~v~~~~~l 333 (457)
T 1xm9_A 261 N-YDCPLPEEETNPKG-----SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ-LIGLKEKGL 333 (457)
T ss_dssp ------CCCCCSSCCG-----GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHH-HHHTTSCCH
T ss_pred c-ccCCccccccCchH-----HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHH-HHHHHcCCc
Confidence 0 0000 000000 0123345667777777764 4577777777 88887653321 2 345678999
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHH
Q 003008 594 GRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAIS 673 (858)
Q Consensus 594 ~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~ 673 (858)
|.|+++|.+++..+++.|+++|.|++.+.+....+
T Consensus 334 ~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i--------------------------------------------- 368 (457)
T 1xm9_A 334 PQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVM--------------------------------------------- 368 (457)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHH---------------------------------------------
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHH---------------------------------------------
Confidence 99999999999999999999999997644322211
Q ss_pred HhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHH
Q 003008 674 AGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIE 753 (858)
Q Consensus 674 ~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~ 753 (858)
..+++++|++
T Consensus 369 ----------------------------------------------------------------------~~~~i~~Lv~ 378 (457)
T 1xm9_A 369 ----------------------------------------------------------------------GNQVFPEVTR 378 (457)
T ss_dssp ----------------------------------------------------------------------HHHTHHHHHH
T ss_pred ----------------------------------------------------------------------HHhhhHHHHH
Confidence 2246788888
Q ss_pred HhccCC------HHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcC-ChHHHHHHHHHHHhhhcCccchH
Q 003008 754 QIKSFS------SEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEG-SNRAVEAGLAILYNLSMDSENHS 824 (858)
Q Consensus 754 lL~~~~------~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nL~~~~~~~~ 824 (858)
+|.+++ .++...++++|.|+...... ++..+.+.||+++|++++.++ ++++++.|..+|.|+..+.++|.
T Consensus 379 lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~-~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQ-LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp TTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH-HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred hccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH-HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 887543 47888999999999876654 788999999999999999999 99999999999999999988764
No 19
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=308.50 Aligned_cols=332 Identities=17% Similarity=0.154 Sum_probs=274.2
Q ss_pred ccCCCcHHHHHHHhcCCC-----------CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcH----------HHHHHHHc
Q 003008 98 TFGDSYVALFVQMLGLDY-----------DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCI----------NLTVNLLR 156 (858)
Q Consensus 98 ~~~~g~i~~lv~lL~~s~-----------d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i----------~~Li~lL~ 156 (858)
..+.|++|.|+.+|+.+. +++.+.+|+++|.|++.++...++ ..++.|++ +.+++++.
T Consensus 66 ~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (458)
T 3nmz_A 66 MRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKR-GRREIRVLHLLEQIRAYCETCWEWQE 144 (458)
T ss_dssp HHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhH-HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 467999999999998432 379999999999999998887754 44478888 66777776
Q ss_pred cCC--HH-----HHH-------HHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcC---------CCCCHHHHHHHHHHH
Q 003008 157 SES--SA-----ACE-------AAAGLLRSISSINVYRDLVAECGAIEEITGLLTR---------PSLTSEVKEQSMCTL 213 (858)
Q Consensus 157 ~~~--~~-----~~~-------~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~~~a~~~L 213 (858)
+.. ++ +++ +|+|+|.||+.++++|+.|.+.|++++|+.+|.. ...++.+++.|+++|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 145 AHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp TTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred hhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 542 12 444 8999999999998999999999999999999952 101467899999999
Q ss_pred HHhccCcc-hHHHHHh-CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHH
Q 003008 214 WNLSVDKK-HRLKIAN-TDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKV 289 (858)
Q Consensus 214 ~nLs~~~~-~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 289 (858)
.|||.+++ ++..+.. .|+||+|+++|+++++++++.++++|.||+.. +.+|..+++.|+++.||++|.+.. .+.
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~--~~~ 302 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KES 302 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCC--SHH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCC--CHH
Confidence 99998765 6777764 56699999999999999999999999999985 468889999999999999764322 455
Q ss_pred HHHHHHHHHHHHhc-ChhhHHHHH-HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCC
Q 003008 290 IRKEARNALIELAK-DDYYRILII-EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNV 367 (858)
Q Consensus 290 ~~~~a~~aL~nl~~-~~~~~~~i~-~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~ 367 (858)
+++.++.+||||+. +++++..++ ..|+++ +|++++. ..+
T Consensus 303 v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~-~Lv~LL~----------------------~~~---------------- 343 (458)
T 3nmz_A 303 TLKSVLSALWNLSAHCTENKADICAVDGALA-FLVGTLT----------------------YRS---------------- 343 (458)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHH-HHHHHTT----------------------CCC----------------
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHhcCcHH-HHHHHhc----------------------CCC----------------
Confidence 88999999999999 788888888 688888 4887531 000
Q ss_pred CCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHH
Q 003008 368 SDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIA 447 (858)
Q Consensus 368 ~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 447 (858)
+ .+..+++..|+++|.
T Consensus 344 -~---------------------------------------------------------------~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 344 -Q---------------------------------------------------------------TNTLAIIESGGGILR 359 (458)
T ss_dssp -S---------------------------------------------------------------SSTTHHHHHHHHHHH
T ss_pred -C---------------------------------------------------------------cchHHHHHHHHHHHH
Confidence 0 001146778899999
Q ss_pred Hhc----CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHH
Q 003008 448 DIS----INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESL 522 (858)
Q Consensus 448 ~l~----~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~ 522 (858)
|++ .++++++.+++.|+++.|+.+|++++..+++.|+++|+||+. +++++..+.+.|++++|+.++..++ ..+
T Consensus 360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~--~~v 437 (458)
T 3nmz_A 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--KMI 437 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS--HHH
T ss_pred HHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC--HHH
Confidence 976 589999999999999999999999999999999999999995 8999999999999999999998554 889
Q ss_pred HHHHHHHHHHhcCCC
Q 003008 523 MEKTLDILGRILDPS 537 (858)
Q Consensus 523 ~~~a~~~L~~l~~~~ 537 (858)
++.|+++|.||+..+
T Consensus 438 ~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 438 AMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999843
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=5.2e-31 Score=306.65 Aligned_cols=409 Identities=17% Similarity=0.139 Sum_probs=340.6
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCC-cccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGG-KKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~-~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~ 177 (858)
-.+.++.|+..|+ ++++.+|..|+..|.++.... ....+.++ +.|++|.|+.+|.++ ++.++..|+++|.+++...
T Consensus 85 ~~~~i~~lv~~L~-s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~-~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 85 LQQELPQMTQQLN-SDDMQEQLSATVKFRQILSREHRPPIDVVI-QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp --CCHHHHHHHHS-CSSHHHHHHHHHHHHHHTCCSSSCSHHHHH-HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCCCccHHHHH-HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 4577999999998 889999999999999997643 22234555 799999999999997 8999999999999999865
Q ss_pred -hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHH
Q 003008 178 -VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLA 255 (858)
Q Consensus 178 -~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~ 255 (858)
+++..+.+.|+++.|+.+|+++ ++.+++.|+++|+||+.+ +.++..+...|+++.|+.++.+.++.++..++++|.
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~ 240 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLS 240 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6888899999999999999987 999999999999999976 567888889999999999999999999999999999
Q ss_pred HHcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCcc
Q 003008 256 NLALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPE 333 (858)
Q Consensus 256 nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~ 333 (858)
+|+... .........|+++.|+.++.++ .+.++..++++|.+|+.. +..+..+++.|+++
T Consensus 241 ~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~--------------- 302 (530)
T 1wa5_B 241 NLCRGKKPQPDWSVVSQALPTLAKLIYSM---DTETLVDACWAISYLSDGPQEAIQAVIDVRIPK--------------- 302 (530)
T ss_dssp HHHCCSSSCCCHHHHGGGHHHHHHHTTCC---CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHH---------------
T ss_pred HHhCCCCCCCcHHHHHhHHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHH---------------
Confidence 999875 4444556679999999999765 355889999999999974 44444444444444
Q ss_pred CCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccc
Q 003008 334 LHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDR 413 (858)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~ 413 (858)
T Consensus 303 -------------------------------------------------------------------------------- 302 (530)
T 1wa5_B 303 -------------------------------------------------------------------------------- 302 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 414 QLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 414 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
.|+.+|.++++.++..|+++|++++ .+++....+++.|+++.|+.+|.+++..++..|+++|++++.
T Consensus 303 ------------~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 303 ------------RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp ------------HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ------------HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 4445555566778889999999966 567777888899999999999999999999999999999997
Q ss_pred -ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcc-cccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008 493 -SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE-MKSKFYDIPVNGSEKGLDAAESLDPSIELTG 570 (858)
Q Consensus 493 -~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a 570 (858)
+++....+.+.|+++.|+.+|..++ ..++..++++|++++..+.. ......+.+.++++.|+.++.+++++++..+
T Consensus 371 ~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 371 GNTEQIQAVIDANLIPPLVKLLEVAE--YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 6777888889999999999998554 89999999999999863211 0233456678999999999999999999999
Q ss_pred H-HHHHhhccccc-----------hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcc
Q 003008 571 N-VIEAAVSETTT-----------SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPS 624 (858)
Q Consensus 571 ~-~l~~L~~~~~~-----------~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~ 624 (858)
+ +|.+++..... .+..+.+.|+++.|..++.++++.+++.|..+|.++....+.
T Consensus 449 l~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~ 514 (530)
T 1wa5_B 449 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred HHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCcccc
Confidence 9 99998754321 225577899999999999999999999999999998765443
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.8e-30 Score=300.46 Aligned_cols=401 Identities=18% Similarity=0.229 Sum_probs=331.5
Q ss_pred CcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-c-chHHHHHhCCCHHHHHHHHccCC-HHHHHHHHHHHHHHcCC-cC
Q 003008 187 GAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-K-KHRLKIANTDILPLLIKSLEDEN-MKVKEAAGGVLANLALS-KS 262 (858)
Q Consensus 187 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~-~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~a~~~L~nL~~~-~~ 262 (858)
-.+|.|++.|.++ ++.++..|+++|.++... + .....+++.|+++.|+++|.+++ +.++..|+++|.+++.. ++
T Consensus 74 ~~l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 74 ESLPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp -CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 3589999999988 999999999999999543 3 56888899999999999999986 99999999999999986 67
Q ss_pred chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCC
Q 003008 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP 341 (858)
Q Consensus 263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~ 341 (858)
.+..+++.|+++.|+.+|+++ .+.+++.|+++|+|++.+ +.++..+.+.|+++ +|+.++.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~-~Ll~lL~--------------- 212 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSS---SDDVREQAVWALGNVAGDSPKCRDLVLANGALL-PLLAQLN--------------- 212 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHH-HHHHTCC---------------
T ss_pred HHHHHHhCCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHH-HHHHHHh---------------
Confidence 778889999999999999875 456999999999999985 67788888888888 4766420
Q ss_pred CcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc
Q 003008 342 DGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI 421 (858)
Q Consensus 342 ~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 421 (858)
T Consensus 213 -------------------------------------------------------------------------------- 212 (528)
T 4b8j_A 213 -------------------------------------------------------------------------------- 212 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIM 500 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l 500 (858)
.++++.++..++++|++++............|+++.|+.+|.++++.++..++++|++|+.. +.....+
T Consensus 213 ----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 282 (528)
T 4b8j_A 213 ----------EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAV 282 (528)
T ss_dssp ----------TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred ----------cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12345567777788888665433333445589999999999999999999999999999984 4555788
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccc
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSET 580 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~ 580 (858)
.+.|+++.|+.+|.+++ ..++..++++|++++... .
T Consensus 283 ~~~g~v~~Lv~lL~~~~--~~v~~~a~~~L~nl~~~~------------------------------------------~ 318 (528)
T 4b8j_A 283 IEAGVCPRLVELLLHPS--PSVLIPALRTVGNIVTGD------------------------------------------D 318 (528)
T ss_dssp HHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTSC------------------------------------------H
T ss_pred HHcCHHHHHHHHHcCCC--hhHHHHHHHHHHHHHcCC------------------------------------------H
Confidence 89999999999998554 789999999999998711 1
Q ss_pred cchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCC
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE 659 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~ 659 (858)
... ..+.+.|++|.|+.+|.++ ++.++..|+++|.+++.+.+.....
T Consensus 319 ~~~-~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~------------------------------- 366 (528)
T 4b8j_A 319 AQT-QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQA------------------------------- 366 (528)
T ss_dssp HHH-HHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHH-------------------------------
T ss_pred HHH-HHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHH-------------------------------
Confidence 122 5677889999999999998 9999999999999987532111000
Q ss_pred ccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccch
Q 003008 660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPIN 739 (858)
Q Consensus 660 ~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 739 (858)
T Consensus 367 -------------------------------------------------------------------------------- 366 (528)
T 4b8j_A 367 -------------------------------------------------------------------------------- 366 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008 740 MEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD 819 (858)
Q Consensus 740 ~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~ 819 (858)
+...|+++.|+.+|.++++.+|..|+++|.|++....++....+++.|++++|+++|.+++++++..|+.+|.||...
T Consensus 367 --~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~ 444 (528)
T 4b8j_A 367 --VINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV 444 (528)
T ss_dssp --HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 114468999999999999999999999999999875555777999999999999999999999999999999999764
Q ss_pred cc------------chHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 820 SE------------NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 820 ~~------------~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
.+ ....+.+.|++..|..+..++++.+ ++|..++.++
T Consensus 445 ~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 445 GETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 32 3566889999999999999999998 8888887754
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.98 E-value=2.3e-29 Score=292.79 Aligned_cols=401 Identities=18% Similarity=0.226 Sum_probs=330.5
Q ss_pred cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCC-c
Q 003008 186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALS-K 261 (858)
Q Consensus 186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~-~ 261 (858)
.+.++.|++.|+++ ++.++..|+.+|.++... +.+...+++.|+++.|+++|.++ ++.++..|+++|.+++.. +
T Consensus 86 ~~~i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 86 QQELPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp -CCHHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 36799999999998 999999999999999654 34567788999999999999997 899999999999999986 4
Q ss_pred CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008 262 SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL 340 (858)
Q Consensus 262 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~ 340 (858)
+.+..+++.|+++.|+.+|+++ .+.+++.|+++|++++.+ +.++..+...|+++ +|+.+
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~-~L~~l---------------- 223 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTG---SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME-PILGL---------------- 223 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHH-HHHHG----------------
T ss_pred HHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHH-HHHHH----------------
Confidence 5667888999999999999875 456999999999999985 67777777777777 36554
Q ss_pred CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008 341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW 420 (858)
Q Consensus 341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 420 (858)
T Consensus 224 -------------------------------------------------------------------------------- 223 (530)
T 1wa5_B 224 -------------------------------------------------------------------------------- 223 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISINE-HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQ 498 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~ 498 (858)
|.+++..++..|+++|++++... .........++++.|+.+|.++++.++..++++|++|+. .++...
T Consensus 224 ----------l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~ 293 (530)
T 1wa5_B 224 ----------FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ 293 (530)
T ss_dssp ----------GGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred ----------hccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 22334567777888888866443 334455568999999999999999999999999999998 567788
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhc
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVS 578 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~ 578 (858)
.+.+.|+++.|+.++.+++ ..++..++++|++++...
T Consensus 294 ~~~~~~~v~~Lv~lL~~~~--~~v~~~a~~~L~~l~~~~----------------------------------------- 330 (530)
T 1wa5_B 294 AVIDVRIPKRLVELLSHES--TLVQTPALRAVGNIVTGN----------------------------------------- 330 (530)
T ss_dssp HHHHTTCHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSC-----------------------------------------
T ss_pred HHHhcCcHHHHHHHHCCCC--hhhHHHHHHHHHHHHcCC-----------------------------------------
Confidence 8889999999999998544 889999999999998611
Q ss_pred cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCC
Q 003008 579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQP 658 (858)
Q Consensus 579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~ 658 (858)
.... ..+.+.|++|.|+.+|.++++.++..|+++|.+++...+.....
T Consensus 331 -~~~~-~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~------------------------------ 378 (530)
T 1wa5_B 331 -DLQT-QVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA------------------------------ 378 (530)
T ss_dssp -HHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH------------------------------
T ss_pred -HHHH-HHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH------------------------------
Confidence 1112 55677899999999999999999999999999987532110000
Q ss_pred CccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccc
Q 003008 659 EKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPI 738 (858)
Q Consensus 659 ~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 738 (858)
T Consensus 379 -------------------------------------------------------------------------------- 378 (530)
T 1wa5_B 379 -------------------------------------------------------------------------------- 378 (530)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcc--hhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008 739 NMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV--DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816 (858)
Q Consensus 739 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~--~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL 816 (858)
+.+.|+++.|+.+|.++++.+|..|+++|.|++..... +....+.+.|++++|+.+|.+++++++..|+.+|.+|
T Consensus 379 ---~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 379 ---VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455 (530)
T ss_dssp ---HHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred ---HHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11456899999999999999999999999999987544 4777899999999999999999999999999999999
Q ss_pred hcCcc------------chHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 817 SMDSE------------NHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 817 ~~~~~------------~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
....+ ....+.+.|+++.|..++.++++.+ ++|..+|.++
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~ 508 (530)
T 1wa5_B 456 LKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 508 (530)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 86532 2356889999999999999999999 8999988764
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=1.8e-29 Score=287.32 Aligned_cols=402 Identities=17% Similarity=0.194 Sum_probs=330.6
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHccc--CCcccHHHHHHhc-CcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc-
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSL--GGKKCIDYIMQFS-GCINLTVNLLRSE-SSAACEAAAGLLRSISSIN- 177 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~--~~~~~~~~ii~~~-g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~- 177 (858)
.++.|+..|+ ++|+.+|..|+..|.++.. .+.. .+.++ +. |+++.|+++|+++ ++.++..|+++|.+++...
T Consensus 21 ~l~~l~~~l~-s~~~~~r~~A~~~L~~l~~~~~~~~-~~~~~-~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 21 ITSDMIEMIF-SKSPEQQLSATQKFRKLLSKEPNPP-IDEVI-STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp -CHHHHHHHH-SSCHHHHHHHHHHHHHHHHSSSSCC-HHHHH-TSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCc-HHHHH-HcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 4788999997 8899999999999999754 2222 34566 56 9999999999998 8999999999999998854
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLA 255 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~ 255 (858)
+++..+.+.|++|.|+++|+++ ++.+++.|+++|.|++.+. .++..+.+.|+++.|+.++.+ .+..++..++++|.
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALS 175 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 6777888999999999999998 9999999999999999765 578888899999999999996 68999999999999
Q ss_pred HHcCCc--CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCc
Q 003008 256 NLALSK--SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 256 nL~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
+++... ..+..+. .++++.|+.+++++ .+.++..++++|.+++.+ ++++..+++.|
T Consensus 176 ~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----------------- 234 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKV-SPCLNVLSWLLFVS---DTDVLADACWALSYLSDGPNDKIQAVIDAG----------------- 234 (450)
T ss_dssp HHHCCSSSCCCGGGT-GGGHHHHHHHTTCC---CHHHHHHHHHHHHHHTSSSHHHHHHHHHTT-----------------
T ss_pred HHhCCCCCCCCHHHH-HHHHHHHHHHHccC---CHHHHHHHHHHHHHHHCCCcHHHHHHHHcC-----------------
Confidence 999764 3333344 78999999999764 355888999999999874 34333333333
Q ss_pred cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008 333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID 412 (858)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~ 412 (858)
T Consensus 235 -------------------------------------------------------------------------------- 234 (450)
T 2jdq_A 235 -------------------------------------------------------------------------------- 234 (450)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhh
Q 003008 413 RQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLS 491 (858)
Q Consensus 413 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls 491 (858)
+++.|+.+|.++++.++..|+++|++++ .+++.++.+.+.|+++.|+.+|+++++.+|..|+++|++++
T Consensus 235 ----------~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~ 304 (450)
T 2jdq_A 235 ----------VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNIT 304 (450)
T ss_dssp ----------THHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred ----------cHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3445556666677888999999999976 45666777888999999999999999999999999999999
Q ss_pred c-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008 492 V-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTG 570 (858)
Q Consensus 492 ~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a 570 (858)
. +++....+.+.|+++.|+.++.+++ ..++..++++|++++..+ .......+.+.++++.|+.++.+++++++..+
T Consensus 305 ~~~~~~~~~~~~~~~l~~L~~~l~~~~--~~v~~~a~~~L~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 381 (450)
T 2jdq_A 305 AGNRAQIQTVIDANIFPALISILQTAE--FRTRKEAAWAITNATSGG-SAEQIKYLVELGCIKPLCDLLTVMDSKIVQVA 381 (450)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcCC--HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 7 7777888889999999999998554 889999999999998621 11222345567899999999999999999999
Q ss_pred H-HHHHhhccccc-----------hhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 571 N-VIEAAVSETTT-----------SYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 571 ~-~l~~L~~~~~~-----------~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+ +|.+++..... .+..+.+.|+++.|..++.+++..+++.|..+|.++...++
T Consensus 382 ~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 382 LNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 9 99998753321 12567788999999999999999999999999999875543
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=4.2e-28 Score=276.03 Aligned_cols=409 Identities=17% Similarity=0.178 Sum_probs=331.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhc--CchhHHHHHhc-CcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cch
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISS--INVYRDLVAEC-GAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKH 222 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~--~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~ 222 (858)
.++.|++.+.++++.++..|+..|+++.. .++....+.+. |++|.|+++|+++. ++.++..++++|.+++.. +++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHH
Confidence 48899999999999999999999999853 23334556666 99999999999863 789999999999999975 566
Q ss_pred HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL 301 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl 301 (858)
...+++.|+++.|+++++++++.+++.|+++|.+++... ..+..+.+.|+++.|+.++++. ....+++.++++|+++
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ--NRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC--CCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999874 5777888999999999999742 2456888999999998
Q ss_pred hcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008 302 AKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA 381 (858)
Q Consensus 302 ~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~ 381 (858)
+.+.. + -...
T Consensus 178 ~~~~~-----------~--~~~~--------------------------------------------------------- 187 (450)
T 2jdq_A 178 CRGKS-----------P--PPEF--------------------------------------------------------- 187 (450)
T ss_dssp HCCSS-----------S--CCCG---------------------------------------------------------
T ss_pred hCCCC-----------C--CCCH---------------------------------------------------------
Confidence 86421 0 0000
Q ss_pred hhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHH
Q 003008 382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFK 460 (858)
Q Consensus 382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~ 460 (858)
.. ..++++.|+.++.++++.++..++++|.+++. .++.+..+.
T Consensus 188 ----------------------------------~~--~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 231 (450)
T 2jdq_A 188 ----------------------------------AK--VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231 (450)
T ss_dssp ----------------------------------GG--TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred ----------------------------------HH--HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 00 02367888899999999999999999999775 567778888
Q ss_pred HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcc
Q 003008 461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKE 539 (858)
Q Consensus 461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~ 539 (858)
+.|+++.|+.+|.++++.++..|+++|++++. ++..+..+.+.|+++.|+.++.++ +..+++.++++|++++..+
T Consensus 232 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~-- 307 (450)
T 2jdq_A 232 DAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGN-- 307 (450)
T ss_dssp HTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSC--
T ss_pred HcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC--
Confidence 99999999999999999999999999999998 566677788889999999999854 4889999999999998611
Q ss_pred cccccccccCcCcHHHHHhhcCCChhHHHHHHHHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 540 MKSKFYDIPVNGSEKGLDAAESLDPSIELTGNVIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 540 ~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
.... +.+.+.|++|.|+++|.++++.++..|+++|.+++
T Consensus 308 ----------------------------------------~~~~-~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 308 ----------------------------------------RAQI-QTVIDANIFPALISILQTAEFRTRKEAAWAITNAT 346 (450)
T ss_dssp ----------------------------------------HHHH-HHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHH-HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 1112 55677899999999999999999999999999986
Q ss_pred cCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHH
Q 003008 620 IIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIK 699 (858)
Q Consensus 620 ~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~ 699 (858)
.+... ..+
T Consensus 347 ~~~~~-~~~----------------------------------------------------------------------- 354 (450)
T 2jdq_A 347 SGGSA-EQI----------------------------------------------------------------------- 354 (450)
T ss_dssp HHCCH-HHH-----------------------------------------------------------------------
T ss_pred cCCCH-HHH-----------------------------------------------------------------------
Confidence 42100 000
Q ss_pred HHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcc
Q 003008 700 LLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVV 779 (858)
Q Consensus 700 ~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~ 779 (858)
. .+...|+++.|+++|++++++++..|+++|.++......
T Consensus 355 ------------------------------------~----~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 394 (450)
T 2jdq_A 355 ------------------------------------K----YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQ 394 (450)
T ss_dssp ------------------------------------H----HHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------H----HHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchh
Confidence 0 011456899999999999999999999999999875432
Q ss_pred ----------hhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCcc
Q 003008 780 ----------DSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSE 821 (858)
Q Consensus 780 ----------~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~ 821 (858)
..+..+.+.||++.|..++++++.++++.|..+|.++..+++
T Consensus 395 ~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 395 EAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp HHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred hhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 124578899999999999999999999999999999986653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1e-28 Score=268.06 Aligned_cols=271 Identities=18% Similarity=0.190 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCC---------CCCHHHHHHHHHHHHHhccCcc-hHHHHHh-
Q 003008 160 SAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRP---------SLTSEVKEQSMCTLWNLSVDKK-HRLKIAN- 228 (858)
Q Consensus 160 ~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~---------~~~~~~~~~a~~~L~nLs~~~~-~~~~i~~- 228 (858)
.....+|+++|.||+.++++|+.|.+.|++++|+.+|..+ ..++.+++.|+++|.|||.+++ +|..+..
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455579999999999999999999999999999999521 1146789999999999997765 7888865
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-Ch
Q 003008 229 TDILPLLIKSLEDENMKVKEAAGGVLANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DD 305 (858)
Q Consensus 229 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~ 305 (858)
.|+||+|+++|+++++++++.++++|.||+.. +++|..+++.|+|+.||++|.+.. ++.+++.|+.+|+||+. ++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHccCh
Confidence 55699999999999999999999999999985 467889999999999999754321 34588999999999999 67
Q ss_pred hhHHHHH-HcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhh
Q 003008 306 YYRILII-EEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVG 384 (858)
Q Consensus 306 ~~~~~i~-~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~ 384 (858)
+++..++ ..|+++ +|++++. ..+ +
T Consensus 204 ~nk~~i~~~~Gai~-~Lv~lL~----------------------~~~-----------------~--------------- 228 (354)
T 3nmw_A 204 ENKADICAVDGALA-FLVGTLT----------------------YRS-----------------Q--------------- 228 (354)
T ss_dssp HHHHHHHHSTTHHH-HHHHHTT----------------------CCC-----------------S---------------
T ss_pred hhhHHHHHhcCcHH-HHHHHhc----------------------cCC-----------------C---------------
Confidence 8888887 688888 4887531 000 0
Q ss_pred hhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc----CChhhHHHHH
Q 003008 385 RSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS----INEHMRMLFK 460 (858)
Q Consensus 385 ~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~----~~~~~~~~l~ 460 (858)
.++.+++..|+++|.+++ .++++++.+.
T Consensus 229 ------------------------------------------------~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 260 (354)
T 3nmw_A 229 ------------------------------------------------TNTLAIIESGGGILRNVSSLIATNEDHRQILR 260 (354)
T ss_dssp ------------------------------------------------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------------------------cccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 001146778889999976 4899999999
Q ss_pred HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCC
Q 003008 461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPS 537 (858)
Q Consensus 461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~ 537 (858)
+.|+++.|+.+|++++..+++.|+++|+||+. +++++..+.+.|+++.|+.++...+ ..+++.|+++|.||+...
T Consensus 261 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~--~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH--KMIAMGSAAALRNLMANR 336 (354)
T ss_dssp TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS--HHHHHHHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC--HHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999995 8999999999999999999998554 889999999999999843
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=6.6e-28 Score=261.74 Aligned_cols=265 Identities=16% Similarity=0.169 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCch-hHHHHHh
Q 003008 118 LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-----------ESSAACEAAAGLLRSISSINV-YRDLVAE 185 (858)
Q Consensus 118 ~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-----------~~~~~~~~a~~aL~nLs~~~~-~~~~i~~ 185 (858)
..+..|+++|.|++.++++ ++.++ +.|+++.|+.+|.+ .+++++..|+++|.||+.+++ +|..+..
T Consensus 47 ~~~~~A~~aL~nls~d~e~-R~~i~-~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEH-RHAMN-ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHH-HHHHH-HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHH-HHHHH-HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3466899999999998654 44555 89999999999953 246789999999999998775 8888865
Q ss_pred -cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHcC-C
Q 003008 186 -CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSL-EDENMKVKEAAGGVLANLAL-S 260 (858)
Q Consensus 186 -~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~a~~~L~nL~~-~ 260 (858)
.|+||.|+++|+++ ++++++.|+++|.||+.. +++|..+++.|++++|+++| +++++++++.++++|+||+. +
T Consensus 125 ~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 125 MKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp CHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHCCC--CHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 56699999999998 999999999999999974 56899999999999999975 56789999999999999998 6
Q ss_pred cCchHHHH-hCCCHHHHHHHHccCCCC-CHHHHHHHHHHHHHHhc----ChhhHHHHHHcCCcccccccccccccCCccC
Q 003008 261 KSNHNILV-EAGVIPKLAMLLKANVEG-SKVIRKEARNALIELAK----DDYYRILIIEEGLVPVPMVGADAYKSFRPEL 334 (858)
Q Consensus 261 ~~~~~~i~-~~g~i~~Lv~ll~~~~~~-~~~~~~~a~~aL~nl~~----~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l 334 (858)
++++..++ ..|+++.|+++|+++++. ...+++.|+++|+||+. +++++..+++.|+++ +|++
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~-~Lv~----------- 270 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ-TLLQ----------- 270 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHH-HHHH-----------
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHH-HHHH-----------
Confidence 68888887 789999999999876432 11378899999999985 677777777777666 3554
Q ss_pred CCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccc
Q 003008 335 HSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQ 414 (858)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~ 414 (858)
T Consensus 271 -------------------------------------------------------------------------------- 270 (354)
T 3nmw_A 271 -------------------------------------------------------------------------------- 270 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC
Q 003008 415 LTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS 493 (858)
Q Consensus 415 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~ 493 (858)
+|.+++.+++..|+++|+|++ .++++++.+++.|++++|+.||+++++.+++.|+++|.||+.+
T Consensus 271 ---------------lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 271 ---------------HLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp ---------------HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred ---------------HHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 444556678999999999987 6899999999999999999999999999999999999999984
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.2e-25 Score=253.00 Aligned_cols=491 Identities=12% Similarity=0.074 Sum_probs=337.6
Q ss_pred HHHHHHHhhc-Cch-hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCC
Q 003008 166 AAGLLRSISS-INV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDEN 243 (858)
Q Consensus 166 a~~aL~nLs~-~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~ 243 (858)
+..+|..+-- .++ ....+...|..+.+.+.+.+.. +..+...++..|...|.+..+|..| ..++++.|.+++++
T Consensus 232 ~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~-~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~-- 307 (778)
T 3opb_A 232 IVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQ-DLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV-- 307 (778)
T ss_dssp HHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSC-CHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS--
T ss_pred HHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhccc-chHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc--
Confidence 4555554422 223 5555666888999998886542 6667777777777778888787777 56778999999976
Q ss_pred HHHHHHHHHHHHHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCC-ccccc
Q 003008 244 MKVKEAAGGVLANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGL-VPVPM 321 (858)
Q Consensus 244 ~~~~~~a~~~L~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~-v~~~L 321 (858)
..++..|+-+|..+...+.... .+.+ ..+.++++|.+.. ..-++.|+..|.-++.+++.|..+++..+ +.. |
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~--La~~~~~~L~~~~---~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~-L 381 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQ--LSEIFINAISRRI---VPKVEMSVEALAYLSLKASVKIMIRSNESFTEI-L 381 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHH--HHHHHHHHTTTCC---HHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHH--HHHHHHHHHhcCC---ccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHH-H
Confidence 4788899999999876543221 1211 4456666665532 12478999999999999999998888644 775 8
Q ss_pred ccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccC
Q 003008 322 VGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESED 401 (858)
Q Consensus 322 v~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~ 401 (858)
++++. .+.+.+..++++..|.||+...++.......+..+
T Consensus 382 v~llk---------------------~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L------------------- 421 (778)
T 3opb_A 382 LTMIK---------------------SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXX------------------- 421 (778)
T ss_dssp HHHHT---------------------TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------------
T ss_pred HHHHh---------------------CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhh-------------------
Confidence 88641 11234678889999999976553211101111111
Q ss_pred CCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHH
Q 003008 402 GRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVR 480 (858)
Q Consensus 402 ~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~ 480 (858)
-.+.+...++...... .+-+-. ..+.++..+.+.|+++.|+.+++++++.+|
T Consensus 422 --------------------------k~~A~~~~p~~~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~r 474 (778)
T 3opb_A 422 --------------------------XXXXXXXXPAADKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCK 474 (778)
T ss_dssp ---------------------------------------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHH
T ss_pred --------------------------hhhccccCcccCcccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHH
Confidence 1111110011000000 011111 122356778899999999999999999999
Q ss_pred HHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCcc-HHHHHHHHHHHHHhcCCCccccccccc-ccCcCcHHHHHh
Q 003008 481 LATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDIS-ESLMEKTLDILGRILDPSKEMKSKFYD-IPVNGSEKGLDA 558 (858)
Q Consensus 481 ~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~i-~~~~~i~~Li~l 558 (858)
..++++|.||+.++++|..++++|++++|+.++...+.. ...++.|+.+|.+++... ++..-..- ...+++++|+++
T Consensus 475 e~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-np~~~f~~~~~~~aI~pLv~L 553 (778)
T 3opb_A 475 QQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT-NPGLIFKKYSALNAIPFLFEL 553 (778)
T ss_dssp HHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-CHHHHSSSSCSTTHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-CHHHHcCCCccccchHHHHHH
Confidence 999999999999999999999999999999999855421 237999999999998521 11110000 113899999999
Q ss_pred hcC-CChh------------H-HHHHH-HHHHhhccc-----cchhhhHhhc-cchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008 559 AES-LDPS------------I-ELTGN-VIEAAVSET-----TTSYGKVLDS-VFIGRMIGIMKTSYPDLQRKAASILEF 617 (858)
Q Consensus 559 l~s-~d~~------------v-~~~a~-~l~~L~~~~-----~~~~~~i~~~-g~i~~L~~lL~s~~~~v~~~a~~~L~~ 617 (858)
|.. ++.+ . +.+|+ +|.||+... +.+ ..+++. |++|.|..+|.+++..+|+.|++++.|
T Consensus 554 L~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r-~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 554 LPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC-KHIVSTKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp SCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH-HHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 982 2211 1 66888 999999765 336 667774 999999999999999999999999999
Q ss_pred hhcCCcch-HHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHH
Q 003008 618 ITIIDPSM-DTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTH 696 (858)
Q Consensus 618 l~~~~~~~-~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 696 (858)
|+.+++.. ..+ + + .
T Consensus 633 L~~~~e~i~~k~------------~------~--------------------------------------~--------- 647 (778)
T 3opb_A 633 MMSHPLTIAAKF------------F------N--------------------------------------L--------- 647 (778)
T ss_dssp HHTSGGGTGGGT------------S------C--------------------------------------C---------
T ss_pred HhCCcHHHHHHH------------H------h--------------------------------------h---------
Confidence 98755432 111 0 0 0
Q ss_pred HHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhc
Q 003008 697 FIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISE 776 (858)
Q Consensus 697 ~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~ 776 (858)
.. ....+.+++||.++.+++.++|.+|++||+|++..
T Consensus 648 ---------------------------------------~~----~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 648 ---------------------------------------EN----PQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp ---------------------------------------SS----HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------cC----chhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 00 00123578999999999999999999999999876
Q ss_pred CcchhhHHHHhc-CCchHHHHHhhc--CChHHHHHHHHHHHhhhcC----c--cchHHHH-HcCchHHHHHhhhcCCh
Q 003008 777 GVVDSTRAVASE-GGIFPLVKLIEE--GSNRAVEAGLAILYNLSMD----S--ENHSAII-AAGAVPALRRIVLSQRP 844 (858)
Q Consensus 777 ~~~~~~~~l~~~-g~i~~Lv~lL~~--~~~~v~~~a~~aL~nL~~~----~--~~~~~i~-~~g~v~~L~~ll~~~~~ 844 (858)
.+. .++.+++. +|++.++++|++ ++++++..++.+++||+.. . +....+. .......|.+++++++.
T Consensus 685 ~~~-ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 685 IPL-IAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp CHH-HHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred ChH-HHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence 655 67888876 899999999999 8999999999999999962 1 2233444 44566777788777654
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.7e-25 Score=253.98 Aligned_cols=403 Identities=11% Similarity=0.030 Sum_probs=308.7
Q ss_pred cccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC
Q 003008 97 STFGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI 176 (858)
Q Consensus 97 ~~~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~ 176 (858)
-...+|.++.+...+....+ .....++.-|.+.+..+..++ ..+ ..++++.|..++++ ++++..|+.+|..|...
T Consensus 250 lfl~e~~~~~l~~~~~~~~~-~~~~~a~L~lLsaACi~~~cR-~~I-~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~ 324 (778)
T 3opb_A 250 IFLTKGLSKLFKKRVFEEQD-LQFTKELLRLLSSACIDETMR-TYI-TENYLQLLERSLNV--EDVQIYSALVLVKTWSF 324 (778)
T ss_dssp HHSTTTHHHHHHHHHHSSCC-HHHHHHHHHHHHHHCCSHHHH-HHH-HHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGG
T ss_pred HHccccHHHHHHHHHhcccc-hHHHHHHHHHHHHHhCCcHHH-HHH-HHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcC
Confidence 34578889999988863444 445566677777777788875 555 47888999999976 57888899999998664
Q ss_pred ch-hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH-hCCCHHHHHHHHcc-CCHHHHHHHHHH
Q 003008 177 NV-YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA-NTDILPLLIKSLED-ENMKVKEAAGGV 253 (858)
Q Consensus 177 ~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~-~~g~i~~Lv~ll~~-~~~~~~~~a~~~ 253 (858)
.. ....+.+ ..+.+.+.|..+ +...++.|++.|.+|+.+++.|..++ +.|+++.|+++++. ++..+...++.+
T Consensus 325 ~~~~~~si~~--La~~~~~~L~~~--~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~I 400 (778)
T 3opb_A 325 TKLTCINLKQ--LSEIFINAISRR--IVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVI 400 (778)
T ss_dssp GTCTTCCHHH--HHHHHHHHTTTC--CHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHH
T ss_pred CCCCcCcHHH--HHHHHHHHHhcC--CccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 42 2222222 467788888886 66669999999999999999999999 56779999999995 677899999999
Q ss_pred HHHHcCCcC---------------------------------------chHHHHhCCCHHHHHHHHccCCCCCHHHHHHH
Q 003008 254 LANLALSKS---------------------------------------NHNILVEAGVIPKLAMLLKANVEGSKVIRKEA 294 (858)
Q Consensus 254 L~nL~~~~~---------------------------------------~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a 294 (858)
|.||+...+ ++..+.+.|++|.|+.+++++ ++.+++.+
T Consensus 401 L~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~---s~~~re~A 477 (778)
T 3opb_A 401 MANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL---SPNCKQQV 477 (778)
T ss_dssp HHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS---CHHHHHHH
T ss_pred HHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC---CHHHHHHH
Confidence 999986422 234668899999999999886 55699999
Q ss_pred HHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCC---chhhHHHHHHhccCCCCCC
Q 003008 295 RNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQG---PSKFGANELLLGLNVSDKN 371 (858)
Q Consensus 295 ~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~a~~aL~nL~~~~~~ 371 (858)
+++|.||+.++++|..+++.|+++ +|++++. .+.. ..+..|+.+|.++....+.
T Consensus 478 ~~aL~nLS~d~~~R~~lvqqGal~-~LL~lL~----------------------s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 478 VRIIYNITRSKNFIPQLAQQGAVK-IILEYLA----------------------NKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp HHHHHHHHTSGGGHHHHHHTTHHH-HHHHHTT----------------------CC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHH-HHHHHHh----------------------cCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999 6999741 1110 2456689999988543310
Q ss_pred ccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCC-CCH-------------H
Q 003008 372 ANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGL-EDE-------------R 437 (858)
Q Consensus 372 ~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~-------------~ 437 (858)
...|......+++++|+.||.. ++. -
T Consensus 535 ----------------------------------------~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 535 ----------------------------------------GLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp ----------------------------------------HHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred ----------------------------------------HHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 0011110112689999999983 221 2
Q ss_pred HHHHHHHHHHHhcCCh-----hhHHHHHHc-CcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHH-HHHHHc------C
Q 003008 438 AIARAAESIADISINE-----HMRMLFKEA-GAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC-QIMEAE------G 504 (858)
Q Consensus 438 v~~~a~~aL~~l~~~~-----~~~~~l~~~-g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~-~~l~~~------g 504 (858)
-+..|+.+|.|++..+ +.|..++.. |+++.|..+|.+++..+|++|++++.||+.+++.+ ..+... +
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~ 654 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhc
Confidence 2779999999977544 558888885 99999999999999999999999999999988764 344322 2
Q ss_pred ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccC-cCcHHHHHhhcC--CChhHHHHHH-HHHHhhc
Q 003008 505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV-NGSEKGLDAAES--LDPSIELTGN-VIEAAVS 578 (858)
Q Consensus 505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~-~~i~~Li~ll~s--~d~~v~~~a~-~l~~L~~ 578 (858)
.++.|+.++.. ++..+|+.|+++|++++.. .......+.+. +|++.++.++.+ ++++++.+++ +++||+.
T Consensus 655 rL~lLV~Ll~s--~D~~~r~AAagALAnLts~--~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 655 NFNILVKLLQL--SDVESQRAVAAIFANIATT--IPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHGGGC--SCHHHHHHHHHHHHHHHHH--CHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcC--CCHHHHHHHHHHHHHhcCC--ChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 47899999974 4599999999999999531 22233344454 799999999998 8999999999 9999985
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=3.8e-22 Score=207.64 Aligned_cols=236 Identities=27% Similarity=0.316 Sum_probs=208.6
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchH
Q 003008 146 GCINLTVNLLRSESSAACEAAAGLLRSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHR 223 (858)
Q Consensus 146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~ 223 (858)
|+++.|+.+|++++++++..|+++|.+++..+ +++..+.+.|+++.|+++|+++ ++.++..++++|.|++.+ ++++
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHH
Confidence 78999999999999999999999999998876 5999999999999999999998 999999999999999987 7789
Q ss_pred HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc-CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHh
Q 003008 224 LKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA-LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELA 302 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~ 302 (858)
..+.+.|+++.|+.++++++++++..++++|.+|+ ..++.+..+.+.|+++.|+++++++ .+.++..++.+|+|++
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 5677888899999999999999865 4568999999999999
Q ss_pred cC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhh
Q 003008 303 KD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNA 381 (858)
Q Consensus 303 ~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~ 381 (858)
.+ +.++..+.+.|+++
T Consensus 157 ~~~~~~~~~~~~~~~i~--------------------------------------------------------------- 173 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVE--------------------------------------------------------------- 173 (252)
T ss_dssp TSCHHHHHHHHHTTHHH---------------------------------------------------------------
T ss_pred cCCHHHHHHHHHCcCHH---------------------------------------------------------------
Confidence 74 45445555555444
Q ss_pred hhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHH
Q 003008 382 MVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFK 460 (858)
Q Consensus 382 li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~ 460 (858)
.|+.++.++++.++..|+++|++++ .+++.+..+.
T Consensus 174 --------------------------------------------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 209 (252)
T 4hxt_A 174 --------------------------------------------VLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV 209 (252)
T ss_dssp --------------------------------------------HHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH
T ss_pred --------------------------------------------HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4445556667789999999999976 4778888999
Q ss_pred HcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC
Q 003008 461 EAGAIKYLVKLLDHSSDAVRLATTHALERLSVS 493 (858)
Q Consensus 461 ~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~ 493 (858)
+.|+++.|+.+++++++.+++.|+++|+||+..
T Consensus 210 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 210 DAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999873
No 30
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=1.9e-22 Score=209.88 Aligned_cols=238 Identities=24% Similarity=0.285 Sum_probs=211.1
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-chhH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-NVYR 180 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~~~~ 180 (858)
|.++.|+.+|+ ++++++|..|+++|.+++.+....+..++ +.|+++.|+++|++++++++..++++|.+|+.+ ++++
T Consensus 2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 67999999998 88899999999999999988775555555 799999999999999999999999999999997 6799
Q ss_pred HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 181 DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 181 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
..+.+.|+++.|+.+++++ ++.++..++++|.||+ .+++++..+.+.|+++.|+++++++++.++..++++|.||+.
T Consensus 80 ~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999987 9999999999999999 677889999999999999999999999999999999999998
Q ss_pred Cc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008 260 SK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW 337 (858)
Q Consensus 260 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~ 337 (858)
.. ..+..+.+.|+++.|+.+++++ .+.++..++.+|++++. ++.++..+.+.|+++. |++++
T Consensus 158 ~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~-L~~ll------------ 221 (252)
T 4hxt_A 158 GPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPTSAIKAIVDAGGVEV-LQKLL------------ 221 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHH-HHHGG------------
T ss_pred CCHHHHHHHHHCcCHHHHHHHHCCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH-HHHHH------------
Confidence 65 4456888999999999999864 45699999999999998 6788899999999994 99864
Q ss_pred CCCCCcchhhcccCCchhhHHHHHHhccCCCC
Q 003008 338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSD 369 (858)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~ 369 (858)
+.++...+..++++|+|+....
T Consensus 222 ----------~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 222 ----------TSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp ----------GCSCHHHHHHHHHHHHHHHHTC
T ss_pred ----------CCCcHHHHHHHHHHHHHHHcCC
Confidence 2233366777999999996544
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.89 E-value=2.2e-22 Score=209.78 Aligned_cols=238 Identities=22% Similarity=0.268 Sum_probs=207.7
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-Cch
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS-INV 178 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~~ 178 (858)
+....+.++++|. ++|+++|..|+++|.++.......++.++ +.|+++.|+.+|++++++++..|+++|.+|+. +++
T Consensus 10 ~~~~~~~~~~~L~-s~~~~~~~~a~~~L~~~l~~~~~~~~~~~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 10 HGSELPQMTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp TTCSHHHHHHHHH-SSCSSHHHHHHHHHHHHHHHHHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCCchHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 4556799999998 88889999999999876664444444555 79999999999999999999999999999998 557
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH-HHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR-LKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
++..+.+.|+++.|+++|+++ ++.+++.|+++|.||+.+++++ ..+.+.|+++.|+++++++++.++..++++|.||
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999887 8888999999999999999999999999999999
Q ss_pred cCCc-CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCC
Q 003008 258 ALSK-SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELH 335 (858)
Q Consensus 258 ~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~ 335 (858)
+..+ +.+..+.+.|+++.|+++++++ .+.+++.|+.+|.|++. ++.++..+++.|+++ .|++++
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~-~L~~ll---------- 231 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQKQAVKEAGALE-KLEQLQ---------- 231 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH-HHHTTT----------
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH-HHHHHh----------
Confidence 9864 5566788899999999999875 45689999999999996 678899999999999 499863
Q ss_pred CCCCCCCcchhhcccCCchhhHHHHHHhccCC
Q 003008 336 SWPSLPDGTEIERTSQGPSKFGANELLLGLNV 367 (858)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~ 367 (858)
+.++...+..|+++|+|++.
T Consensus 232 ------------~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 232 ------------SHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ------------TCSSSHHHHTHHHHHHTTC-
T ss_pred ------------CCCCHHHHHHHHHHHHHHhc
Confidence 22344667779999999963
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.89 E-value=7.9e-22 Score=205.62 Aligned_cols=236 Identities=23% Similarity=0.347 Sum_probs=206.8
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHh-hcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-Ccch
Q 003008 145 SGCINLTVNLLRSESSAACEAAAGLLRSI-SSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKH 222 (858)
Q Consensus 145 ~g~i~~Li~lL~~~~~~~~~~a~~aL~nL-s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~ 222 (858)
....+.++..|.+++++++..|+++|.++ +.+++++..+.+.|+++.|+++|+++ ++.++..|+++|.|++. ++++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999999999999999999776 44557899999999999999999998 89999999999999997 6788
Q ss_pred HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Q 003008 223 RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIEL 301 (858)
Q Consensus 223 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl 301 (858)
+..+.+.|+++.|+.+|+++++.+++.++++|.||+.++..+ ..+.+.|+++.|+++|+++ .+.++..++++|+|+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888 7889999999999999775 456899999999999
Q ss_pred hc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHh
Q 003008 302 AK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMN 380 (858)
Q Consensus 302 ~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~ 380 (858)
+. ++.++..+++.|+++. |+
T Consensus 166 ~~~~~~~~~~~~~~~~i~~-L~---------------------------------------------------------- 186 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPA-LV---------------------------------------------------------- 186 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHH-HH----------------------------------------------------------
T ss_pred HcCChHHHHHHHHCCCHHH-HH----------------------------------------------------------
Confidence 98 4555555666665552 44
Q ss_pred hhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHH
Q 003008 381 AMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLF 459 (858)
Q Consensus 381 ~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l 459 (858)
.+|.++++.++..|+++|++++ .+++.+..+
T Consensus 187 ------------------------------------------------~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 218 (252)
T 4db8_A 187 ------------------------------------------------QLLSSPNEQILQEALWALSNIASGGNEQKQAV 218 (252)
T ss_dssp ------------------------------------------------HGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ------------------------------------------------HHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4445556778899999999976 678888899
Q ss_pred HHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 460 KEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 460 ~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
.+.|+++.|+.++.++++.+++.|+++|+||+.
T Consensus 219 ~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 219 KEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999975
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=203.87 Aligned_cols=199 Identities=18% Similarity=0.167 Sum_probs=171.0
Q ss_pred CCcHHHHHHHhcCCCCH--HHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcC-c
Q 003008 101 DSYVALFVQMLGLDYDP--LDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSI-N 177 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~--~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~-~ 177 (858)
.-.+|.++.+|+ ++|+ +++..|+++|.+++..++..+..++ +.|+||.|+++|+++++++++.|+++|+||+.. +
T Consensus 7 ~~~i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~-~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 7 EMTLERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVN-QLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCHHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH-HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 345899999998 7776 8899999999999987665555555 799999999999999999999999999999984 6
Q ss_pred hhHHHHHhcCcHHHHHHHhc-CCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc----------------
Q 003008 178 VYRDLVAECGAIEEITGLLT-RPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE---------------- 240 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~---------------- 240 (858)
++|..|.+.|+||+|+++|+ ++ +..+++.++.+|+|||..+++|..|++. ++++|+.++.
T Consensus 85 ~nk~~I~~~GaI~~Lv~lL~~~~--~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 85 DNKLEVAELNGVPRLLQVLKQTR--DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHHHHcCCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 89999999999999999998 45 8999999999999999999999999875 6999998763
Q ss_pred cCCHHHHHHHHHHHHHHcCC-cCchHHHHhC-CCHHHHHHHHccC---CCCCHHHHHHHHHHHHHHhcC
Q 003008 241 DENMKVKEAAGGVLANLALS-KSNHNILVEA-GVIPKLAMLLKAN---VEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 241 ~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~-g~i~~Lv~ll~~~---~~~~~~~~~~a~~aL~nl~~~ 304 (858)
..+++++++|+.+|+||+.. ++.|..+++. |.|+.||.+++.+ ...+...+++|+.+|+|||..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 12668999999999999985 5899999886 5689999999863 112335789999999999963
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.86 E-value=1.5e-20 Score=190.14 Aligned_cols=199 Identities=25% Similarity=0.335 Sum_probs=176.2
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc-Cc
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS-IN 177 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~-~~ 177 (858)
...|..+.|+.+|+ ++|+.++..|+++|.+++.++...+..++ +.|+++.|+++|++++++++..|+++|.||+. ++
T Consensus 9 ~~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 9 HHGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ----CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 35788899999998 88999999999999999977766655555 79999999999999999999999999999996 45
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
+++..+.+.|+++.|+.+|+++ ++.+++.|+++|+|++.+ ++.+..+.+.|+++.|+++++++++.++..++++|.|
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7999999999999999999998 999999999999999964 4567788899999999999999999999999999999
Q ss_pred HcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 257 LALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 257 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
++.. ++.+..+.+.|+++.|+++++++ .+.+++.|+.+|.+|+.+
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHE---NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHCC-
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHhcC
Confidence 9987 67777889999999999999865 456999999999999853
No 35
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=7.9e-21 Score=191.72 Aligned_cols=202 Identities=17% Similarity=0.185 Sum_probs=168.2
Q ss_pred CcHHHHHHHHccCCH--HHHHHHHHHHHHhhc-CchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-Ccc
Q 003008 146 GCINLTVNLLRSESS--AACEAAAGLLRSISS-INVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKK 221 (858)
Q Consensus 146 g~i~~Li~lL~~~~~--~~~~~a~~aL~nLs~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~ 221 (858)
-.+|.|+++|+++++ +++..|++.|.+|+. ++++|..|.+.|+||+|+++|+++ ++.+++.|+++|.||+. +++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHH
Confidence 358999999999987 888899999999996 557999999999999999999998 99999999999999997 578
Q ss_pred hHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHc---cCC----------CCC
Q 003008 222 HRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLK---ANV----------EGS 287 (858)
Q Consensus 222 ~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~---~~~----------~~~ 287 (858)
+|..|++.|+||+|+++|++ ++.++++.++.+|+||+..+.+|..+++ +++++|++++. +|. ...
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999999984 6899999999999999999999998887 46999998653 221 113
Q ss_pred HHHHHHHHHHHHHHhc-ChhhHHHHHHcC-CcccccccccccccCCccCCCCCCCCCcchhh-cccCCchhhHHHHHHhc
Q 003008 288 KVIRKEARNALIELAK-DDYYRILIIEEG-LVPVPMVGADAYKSFRPELHSWPSLPDGTEIE-RTSQGPSKFGANELLLG 364 (858)
Q Consensus 288 ~~~~~~a~~aL~nl~~-~~~~~~~i~~~g-~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~a~~aL~n 364 (858)
..++++|..+|+||+. ++++|+.|++++ +|+ .|+.++. .. .- ...+...+..|+.+|+|
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~-~Lv~~l~--~~---------------~~~~~~~~k~~En~v~~L~n 226 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLID-SLVHYVR--GT---------------IADYQPDDKATENCVCILHN 226 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHH-HHHHHHH--HH---------------HHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHH-HHHHHHH--hh---------------hhcccchhHHHHHHHHHHHH
Confidence 4689999999999998 679999999975 568 5998741 00 00 01122456679999999
Q ss_pred cCCC
Q 003008 365 LNVS 368 (858)
Q Consensus 365 L~~~ 368 (858)
|+..
T Consensus 227 Ls~~ 230 (233)
T 3tt9_A 227 LSYQ 230 (233)
T ss_dssp HCCC
T ss_pred HHhh
Confidence 9754
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.83 E-value=1.9e-19 Score=181.99 Aligned_cols=195 Identities=16% Similarity=0.172 Sum_probs=175.6
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQ 498 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~ 498 (858)
++..+.|+.+|++++++++..|+++|.+++ .+++.+..+++.|+++.|+.+|+++++.++..|+++|+|++. +++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 458899999999999999999999999977 788899999999999999999999999999999999999996 788999
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV 577 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~ 577 (858)
.+.+.|+++.|+.+|.+++ ..+++.++++|+|++.. .......+.+.|+++.|++++.+++++++..++ +|.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPN--EQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSC--HHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCc--HHHHHHHHHHHHHHHcC--CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998554 89999999999999973 222334567789999999999999999999999 999999
Q ss_pred cc-ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 578 SE-TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 578 ~~-~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
.. ...+ ..+.+.|+++.|++++.++++.+++.|+++|.+++.
T Consensus 167 ~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SGGNEQK-QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TSCHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cCCcHHH-HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 77 4455 888999999999999999999999999999999874
No 37
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=1.2e-16 Score=187.81 Aligned_cols=570 Identities=11% Similarity=0.067 Sum_probs=360.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLV 183 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i 183 (858)
+..++..|+ ++|+.+|..|+..|..++..-.. .... ...++.|...+ ++++++|..++..|..+...-....
T Consensus 12 i~~l~~~l~-s~~~~~R~~A~~~l~~i~~~~~~--~~~~--~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~-- 83 (588)
T 1b3u_A 12 IAVLIDELR-NEDVQLRLNSIKKLSTIALALGV--ERTR--SELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPE-- 83 (588)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCH--HHHH--HTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGG--
T ss_pred HHHHHHHhh-cccHHHHHHHHHhHHHHHHHhCH--HHHH--HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHH--
Confidence 778999998 89999999999999887642221 1111 34566666555 6788999999999988764311110
Q ss_pred HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCc
Q 003008 184 AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSN 263 (858)
Q Consensus 184 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~ 263 (858)
.....++.|..++.++ ++.++..|+.+|.+++..-... ....-.++.+.++..+++..++..++.++..++..-..
T Consensus 84 ~~~~ll~~L~~l~~~~--~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~ 159 (588)
T 1b3u_A 84 YVHCLLPPLESLATVE--ETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS 159 (588)
T ss_dssp GGGGGHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH
T ss_pred HHHHHHHHHHHHHhCc--hHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH
Confidence 1133567777777776 9999999999999998543221 11223466677777777889999999999998765332
Q ss_pred hHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCc
Q 003008 264 HNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDG 343 (858)
Q Consensus 264 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~ 343 (858)
. .....++.+.++++.. .+.+|..++.+|..++..-... ......++. |..++
T Consensus 160 ~---~~~~l~~~l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~-l~~~~------------------ 212 (588)
T 1b3u_A 160 A---VKAELRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLELD--NVKSEIIPM-FSNLA------------------ 212 (588)
T ss_dssp H---HHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHH-HHHHH------------------
T ss_pred H---HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHH-HHHHh------------------
Confidence 1 1234567777777543 5669999999999998742211 112233442 44331
Q ss_pred chhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccccc
Q 003008 344 TEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDG 423 (858)
Q Consensus 344 ~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 423 (858)
...+...+..++.+|..++... + +.. .....
T Consensus 213 ----~d~~~~vr~~a~~~l~~l~~~~-------------------------~---------------~~~-----~~~~~ 243 (588)
T 1b3u_A 213 ----SDEQDSVRLLAVEACVNIAQLL-------------------------P---------------QED-----LEALV 243 (588)
T ss_dssp ----TCSCHHHHTTHHHHHHHHHHHS-------------------------C---------------HHH-----HHHHT
T ss_pred ----cCCcHHHHHHHHHHHHHHHHhC-------------------------C---------------HHH-----HHHHH
Confidence 1111123333444444432110 0 000 00125
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHH
Q 003008 424 VARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIME 501 (858)
Q Consensus 424 i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~ 501 (858)
++.+..+++++++.+|..++.+|+.++..... .......++.+..+++++++.+|..++.+|+.++.. ++.+....
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 67777888999999999999999996531111 123456799999999999999999999999999862 22222122
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET 580 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~ 580 (858)
-...+|.+..++.+++ ..++..++.+|..++. ..... ......++.+..++.+++++++..++ ++..+....
T Consensus 322 ~~~l~p~l~~~l~d~~--~~vR~~a~~~l~~l~~---~~~~~--~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 322 MSQILPCIKELVSDAN--QHVKSALASVIMGLSP---ILGKD--NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp HHTHHHHHHHHHTCSC--HHHHHHHHTTGGGGHH---HHCHH--HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHH---HhhHh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 3456788888887554 7899999988888764 11100 01123567888999999999999988 776665432
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCc
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEK 660 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~ 660 (858)
... ......+|.+..++.+.+..++..++.++..++..-... + ....-+..++ ..+.+.+.
T Consensus 395 ~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~---~~~~l~~~l~--~~l~d~~~--------- 455 (588)
T 1b3u_A 395 GIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE--F---FDEKLNSLCM--AWLVDHVY--------- 455 (588)
T ss_dssp CHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG--G---CCHHHHHHHH--HGGGCSSH---------
T ss_pred CHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH--H---HHHHHHHHHH--HHhcCCcH---------
Confidence 211 122356788999999999999999999998886421110 0 0000111111 11211111
Q ss_pred cchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchh
Q 003008 661 YALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINM 740 (858)
Q Consensus 661 ~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 740 (858)
.. +.....++..+.. .++.
T Consensus 456 ------------------------------~V---------------------r~~a~~~l~~l~~----------~~~~ 474 (588)
T 1b3u_A 456 ------------------------------AI---------------------REAATSNLKKLVE----------KFGK 474 (588)
T ss_dssp ------------------------------HH---------------------HHHHHHHHHHHHH----------HHCH
T ss_pred ------------------------------HH---------------------HHHHHHHHHHHHH----------HhCc
Confidence 00 0001111111110 0000
Q ss_pred hhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCc
Q 003008 741 EVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS 820 (858)
Q Consensus 741 ~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~ 820 (858)
.......+|.|+.++.+++..+|..++.++..+...-.. .......++.|+++++++++.||..++.+|..+...-
T Consensus 475 ~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh
Confidence 000123578888888899999999999999988643211 2234467799999999999999999999999997542
Q ss_pred cchHHHHHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 821 ENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 821 ~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
. .......++|.|..++.++++.+ +.|..++..+
T Consensus 551 ~--~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 551 D--NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp C--HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred c--hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 1 12334567888999999999998 7777777765
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.77 E-value=9.2e-18 Score=177.11 Aligned_cols=194 Identities=20% Similarity=0.258 Sum_probs=167.7
Q ss_pred HHHHHHHhcCCC------------CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHH
Q 003008 104 VALFVQMLGLDY------------DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVN-LLRSESSAACEAAAGLL 170 (858)
Q Consensus 104 i~~lv~lL~~s~------------d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~-lL~~~~~~~~~~a~~aL 170 (858)
++..+..|. ++ +.+.+..|+..|.+++.+.++. ..++ +.|+++.|+. +|.++++.++..|+++|
T Consensus 30 mk~~l~vl~-~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna-~~~~-~~G~l~~Lv~~lL~s~~~~vr~~Aa~~L 106 (296)
T 1xqr_A 30 MKSCLRVLS-QPMPPTAGEAEQAADQQEREGALELLADLCENMDNA-ADFC-QLSGMHLLVGRYLEAGAAGLRWRAAQLI 106 (296)
T ss_dssp HHHHHHHHH-SCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHH-HHHH-HTTHHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcccccccccCCCHHHHHHHHHHHHHHHhChhhH-HHHH-HcCCHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566777776 43 2256788999999999876653 4555 7999999999 99999999999999999
Q ss_pred HHhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccCCHHHHH
Q 003008 171 RSISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDENMKVKE 248 (858)
Q Consensus 171 ~nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~ 248 (858)
+|++.++ .+|..+++.|++|+|+.+|++.+ ++.+++.|+++|.|++.+. .....+.+.|+++.|+.+|+++++.++.
T Consensus 107 g~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 107 GTCSQNVAAIQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 9999865 58999999999999999999632 7899999999999999654 5577888999999999999999999999
Q ss_pred HHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 249 AAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 249 ~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
.++|+|.+|+.. ++.+..+++.|+++.|+.+|++++. .+++.++.+|+|++..
T Consensus 186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~---~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS---PFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh---hHHHHHHHHHHHHHhC
Confidence 999999999875 5677789999999999999987643 3899999999999986
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.74 E-value=7e-16 Score=189.60 Aligned_cols=613 Identities=12% Similarity=0.071 Sum_probs=348.8
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
..-..++..|. ++++.+|..++.++..++...... . -.+.++.|+..+.+++..+++.++.+|..++......
T Consensus 90 ~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~---~--wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~- 162 (852)
T 4fdd_A 90 FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQ---N--WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI- 162 (852)
T ss_dssp HHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTT---T--CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH-
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCcc---c--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH-
Confidence 33455777786 788899999999999998754221 1 2578999999999999999999999999997643211
Q ss_pred HHH-------hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHH
Q 003008 182 LVA-------ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVL 254 (858)
Q Consensus 182 ~i~-------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L 254 (858)
+. -.+.++.++++++++ ++.++..|+++|.++.........-.-...++.|+.++.+++++++..++++|
T Consensus 163 -~~~~~~~~~~~~il~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 163 -LDSDVLDRPLNIMIPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp -HHHCSSSSCHHHHHHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred -hchhhhcchHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 11 123578888888887 99999999999998875433211111235678888989999999999999999
Q ss_pred HHHcCCcCchH-HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccc---ccccccccccC
Q 003008 255 ANLALSKSNHN-ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPV---PMVGADAYKSF 330 (858)
Q Consensus 255 ~nL~~~~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~---~Lv~ll~~~~~ 330 (858)
.+++....... ... .+.++.++..+++. .+.++..|+..+..++..+..+..+ ...+.. .++..+.|.+.
T Consensus 240 ~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~---~~~vr~~a~e~l~~l~~~~~~~~~~--~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 240 VMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ---DENVALEACEFWLTLAEQPICKDVL--VRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp HHHHHHCHHHHGGGH-HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHTTSTTHHHHH--TTTHHHHHHHHHHHTSCCHH
T ss_pred HHHHHhCHHHHHHHH-HHHHHHHHHHccCC---cHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHHHHHHcCCcHh
Confidence 99986432111 111 14567777777653 4558999999999999765433322 112221 12222111000
Q ss_pred CccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCC------CCccchHHHHhhhhhhhhhhHHHHhhcccccCCCC
Q 003008 331 RPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSD------KNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRK 404 (858)
Q Consensus 331 ~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~------~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~ 404 (858)
+. .+.+.. ..-++ .+..+..++...+.. ++...
T Consensus 314 d~------------~~~~~d--------------~~ed~~~dd~~~~~~vr~~a~~~L~~------la~~~--------- 352 (852)
T 4fdd_A 314 DI------------ILLKGD--------------VEGGSGGDDTISDWNLRKCSAAALDV------LANVY--------- 352 (852)
T ss_dssp HH------------HHHHC--------------------------CCCCHHHHHHHHHHH------HHHHH---------
T ss_pred HH------------HHhcCC--------------cccccccccccccchHHHHHHHHHHH------HHHhc---------
Confidence 00 000000 00000 011122222222111 22111
Q ss_pred CCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHH
Q 003008 405 PQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATT 484 (858)
Q Consensus 405 ~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~ 484 (858)
........++.+..+++++++.++..|+++|+.++........-.-.+.++.|+.+++++++.||..++
T Consensus 353 -----------~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~ 421 (852)
T 4fdd_A 353 -----------RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITC 421 (852)
T ss_dssp -----------GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 000111256777888899999999999999999764332221122356799999999999999999999
Q ss_pred HHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCC
Q 003008 485 HALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLD 563 (858)
Q Consensus 485 ~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d 563 (858)
++|++++.. ......-.-.+.++.|+..+.++ +..+++.++++|.+++... .....-.-...++.|+..+...+
T Consensus 422 ~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~---~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 422 WTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA---CTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH---GGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh---hHhhHhHHHHHHHHHHHHHHHhC
Confidence 999999862 11000011124677888888744 4899999999999998621 11110111345666777777665
Q ss_pred hhHHHHHH-HHHHhhccc---cchhhhHhhccchhHHHH---hhcCCCHHHHHHHHHHHHHhhcCCcc-hHHHHhhchHH
Q 003008 564 PSIELTGN-VIEAAVSET---TTSYGKVLDSVFIGRMIG---IMKTSYPDLQRKAASILEFITIIDPS-MDTIISADIES 635 (858)
Q Consensus 564 ~~v~~~a~-~l~~L~~~~---~~~~~~i~~~g~i~~L~~---lL~s~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~ 635 (858)
......+. ++..++... ... ....+ ..+|.+++ .+.+.++.++ .++.++..++..-.. ...+ ...
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~-~~~~~-~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~----~~~ 569 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNK-PEYIQ-MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY----CEP 569 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCC-HHHHH-HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH----HHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhcc-HHHHH-HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHH----HHH
Confidence 55444444 565554211 111 11221 34555553 3345555553 566666665532111 0111 000
Q ss_pred HHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhh------cccchHHHHHHHHHHhhccC
Q 003008 636 GLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFC------QTINSTHFIKLLRKILKSNV 709 (858)
Q Consensus 636 gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~------~~~~~~~~~~~l~~~l~~~~ 709 (858)
-+..++ .++.+ .+..-....... +......++..+.
T Consensus 570 i~~~~~--~~l~~-----------------------------~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~------- 611 (852)
T 4fdd_A 570 VYQRCV--NLVQK-----------------------------TLAQAMLNNAQPDQYEAPDKDFMIVALDLLS------- 611 (852)
T ss_dssp HHHHHH--HHHHH-----------------------------HHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH-------
T ss_pred HHHHHH--HHHHH-----------------------------HHHHHHHhhcCCcccCCCcchHHHHHHHHHH-------
Confidence 011111 00000 000000000000 0000000001111
Q ss_pred CCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhH-HHHhc
Q 003008 710 PLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTR-AVASE 788 (858)
Q Consensus 710 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~-~l~~~ 788 (858)
.++.-++ ..+...+...+.++.++..+.+.++.+|..|..++..++..... ... ++..
T Consensus 612 ----------~l~~~l~---------~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~l~~- 670 (852)
T 4fdd_A 612 ----------GLAEGLG---------GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ-HVKPCIAD- 670 (852)
T ss_dssp ----------HHHHHHG---------GGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG-GTGGGHHH-
T ss_pred ----------HHHHHHh---------HhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhH-HHHHHHHH-
Confidence 1111000 11111111245688888899999999999999999999865443 222 2222
Q ss_pred CCchHHHHHhhcCChHHHHHHHHHHHhhhcCc--cchHHHHHcCchHHHHHhhhcCCh--hH-HHHHHHHhcC
Q 003008 789 GGIFPLVKLIEEGSNRAVEAGLAILYNLSMDS--ENHSAIIAAGAVPALRRIVLSQRP--QW-TRALRLLRNL 856 (858)
Q Consensus 789 g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~--~~~~~i~~~g~v~~L~~ll~~~~~--~~-~~al~~l~~l 856 (858)
.+|.+++.|+.++..++..|++++..++..- .....+ ..+++.|++++.+++. .+ +.|..++..+
T Consensus 671 -~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~--~~il~~L~~~l~~~~~~~~~~~~a~~~igrl 740 (852)
T 4fdd_A 671 -FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRL 740 (852)
T ss_dssp -HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGT--HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHH--HHHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 5678888888888899999999999987542 222222 3568888898887643 23 6666666543
No 40
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.74 E-value=2.4e-17 Score=173.87 Aligned_cols=197 Identities=12% Similarity=0.150 Sum_probs=169.1
Q ss_pred cHHHHHHHhCCCC------------HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHH-hhcCCcHHHHHHHHHHHHH
Q 003008 423 GVARLVLILGLED------------ERAIARAAESIADISINEHMRMLFKEAGAIKYLVK-LLDHSSDAVRLATTHALER 489 (858)
Q Consensus 423 ~i~~Lv~lL~~~~------------~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~-LL~~~~~~v~~~a~~aL~~ 489 (858)
-++..+..|.+++ .+-+..|+..|.++..+.++...+.+.|++++|+. +|.++++.+|..|+++|++
T Consensus 29 ~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ 108 (296)
T 1xqr_A 29 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGT 108 (296)
T ss_dssp HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455666666542 24677889999998888889999999999999999 9999999999999999999
Q ss_pred hhc-ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHH
Q 003008 490 LSV-SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIEL 568 (858)
Q Consensus 490 Ls~-~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~ 568 (858)
++. ++.++..+.+.|++++|+.+|.. +.+..+++.|+++|++++... ......+...||++.|+.++.++++.++.
T Consensus 109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~-~~~~~v~~~A~~ALsnl~~~~--~~~~~~~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 109 CSQNVAAIQEQVLGLGALRKLLRLLDR-DACDTVRVKALFAISCLVREQ--EAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcCC--cHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 998 68899999999999999999984 234889999999999999732 22333566789999999999999999999
Q ss_pred HHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 569 TGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 569 ~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
.++ +|.+++......+..+.+.|++++|+.+|.+.++.+++.|+.+|.+++...
T Consensus 186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999 999998654433388999999999999999999999999999999999873
No 41
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.72 E-value=5.2e-15 Score=173.73 Aligned_cols=533 Identities=12% Similarity=0.060 Sum_probs=336.3
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
.++.|...+ ++++.+|..++..|+.+...-... .. ....++.|..++.++++.+|..|+.+|.+++......
T Consensus 50 l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~--~~--~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-- 121 (588)
T 1b3u_A 50 LLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGP--EY--VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-- 121 (588)
T ss_dssp HHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSG--GG--GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcH--HH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--
Confidence 455555544 467789999999999877532211 11 2457788888888889999999999999998754221
Q ss_pred HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC
Q 003008 183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS 262 (858)
Q Consensus 183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~ 262 (858)
......+|.+.++..+. +...+..++.+|..++..-... .....++.+..++.++++.++..++.+|..++..-.
T Consensus 122 ~~~~~l~~~l~~l~~~~--~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 196 (588)
T 1b3u_A 122 DLEAHFVPLVKRLAGGD--WFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196 (588)
T ss_dssp HHHHTHHHHHHHHHTCS--SHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Confidence 12223467777777776 8899999999999887543221 123357788888899999999999999999986533
Q ss_pred chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCC
Q 003008 263 NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLP 341 (858)
Q Consensus 263 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~ 341 (858)
.. ......+|.+..+++.. ...++..|+.+|..++.. +.. ......++ .+.+++
T Consensus 197 ~~--~~~~~l~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~-~l~~~~---------------- 251 (588)
T 1b3u_A 197 LD--NVKSEIIPMFSNLASDE---QDSVRLLAVEACVNIAQLLPQE---DLEALVMP-TLRQAA---------------- 251 (588)
T ss_dssp HH--HHHHTHHHHHHHHHTCS---CHHHHTTHHHHHHHHHHHSCHH---HHHHHTHH-HHHHHH----------------
T ss_pred HH--hHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHhCCHH---HHHHHHHH-HHHHHc----------------
Confidence 22 22345678888888654 456889999999998863 211 11122333 133321
Q ss_pred CcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccccc
Q 003008 342 DGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWI 421 (858)
Q Consensus 342 ~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 421 (858)
...+...++.++.+|..+... .+. + ....
T Consensus 252 ------~d~~~~vR~~a~~~l~~l~~~-------------------------~~~---------------~-----~~~~ 280 (588)
T 1b3u_A 252 ------EDKSWRVRYMVADKFTELQKA-------------------------VGP---------------E-----ITKT 280 (588)
T ss_dssp ------TCSSHHHHHHHHHTHHHHHHH-------------------------HCH---------------H-----HHHH
T ss_pred ------cCCCHHHHHHHHHHHHHHHHH-------------------------hCc---------------c-----cchh
Confidence 111112333455544444210 000 0 0011
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQI 499 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 499 (858)
..++.++.++++++++++..|+.+|..++. .++.+....-...++.+..+++++++.+|..++++|+.++..-.. .
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~ 358 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--D 358 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h
Confidence 257888899999999999999999999542 223222233467789999999999999999999999998752110 1
Q ss_pred HHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008 500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS 578 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~ 578 (858)
......+|.+..++++. +..++..+..+|..+.. ..... ......++.+..++.+++..++..++ ++..++.
T Consensus 359 ~~~~~l~p~l~~~l~d~--~~~Vr~~a~~~l~~l~~---~~~~~--~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 359 NTIEHLLPLFLAQLKDE--CPEVRLNIISNLDCVNE---VIGIR--QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp HHHHHTHHHHHHHHTCS--CHHHHHHHHTTCHHHHH---HSCHH--HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHHHH---hcCHH--HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 11234778888899844 48899999888877764 11100 01123477788888888888988888 8877764
Q ss_pred cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCC
Q 003008 579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQP 658 (858)
Q Consensus 579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~ 658 (858)
..... ......+|.+..++.+.+..++..|+.++..+...-.....+ ...+..+. ..+.+.++
T Consensus 432 ~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-----~~llp~l~--~~~~~~~~------- 494 (588)
T 1b3u_A 432 QLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH-----ATIIPKVL--AMSGDPNY------- 494 (588)
T ss_dssp HHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH-----HHTHHHHH--HTTTCSCH-------
T ss_pred HcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHH-----HHHHHHHH--HHhhCCCH-------
Confidence 32211 122345788999999999999999999999886532111000 00111111 11111110
Q ss_pred CccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccc
Q 003008 659 EKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPI 738 (858)
Q Consensus 659 ~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 738 (858)
.....+..++..+... +
T Consensus 495 ------------------------------~~R~~a~~~l~~l~~~---------------------------------~ 511 (588)
T 1b3u_A 495 ------------------------------LHRMTTLFCINVLSEV---------------------------------C 511 (588)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHH---------------------------------H
T ss_pred ------------------------------HHHHHHHHHHHHHHHh---------------------------------c
Confidence 0000001111111000 0
Q ss_pred hhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhh
Q 003008 739 NMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLS 817 (858)
Q Consensus 739 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~ 817 (858)
+........+|.|++++++++++||..++.+|..+...-.. .......+|.|.+++++.+.+||..|..+|..+.
T Consensus 512 ~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~----~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 512 GQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN----STLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch----hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 00011234688999999999999999999999998753222 1222344567777888999999999999998764
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.68 E-value=2.1e-14 Score=176.36 Aligned_cols=596 Identities=12% Similarity=0.045 Sum_probs=346.8
Q ss_pred CCcHHHHHHHhc--CCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch
Q 003008 101 DSYVALFVQMLG--LDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 101 ~g~i~~lv~lL~--~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~ 178 (858)
.+....+..++. .+.++.+|..|+..|.|...........-. +...-+.+++.+.++++.+|..++.++..++..+.
T Consensus 44 p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~-~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~ 122 (852)
T 4fdd_A 44 PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV-TDFIKSECLNNIGDSSPLIRATVGILITTIASKGE 122 (852)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH-HHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC
Confidence 455566777664 366889999999999887654322111111 23445667777888899999999999999976431
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH-H----hCCCHHHHHHHHccCCHHHHHHHHHH
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI-A----NTDILPLLIKSLEDENMKVKEAAGGV 253 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i-~----~~g~i~~Lv~ll~~~~~~~~~~a~~~ 253 (858)
.. ...+.++.|++.+.++ ++.+++.++.+|..++.+-.....- . -...++.++++++++++.++..|+++
T Consensus 123 ~~---~wp~ll~~L~~~l~~~--~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a 197 (852)
T 4fdd_A 123 LQ---NWPDLLPKLCSLLDSE--DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC 197 (852)
T ss_dssp TT---TCTTHHHHHHHHHSCS--SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH
T ss_pred cc---ccHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 10 1245789999999988 9999999999999998543221100 0 12356777788888899999999999
Q ss_pred HHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCc
Q 003008 254 LANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 254 L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
|.++.........-.-...++.|..++.++ .+.++..++.+|.+++.. ++ .+...
T Consensus 198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~---~~~vr~~a~~~L~~l~~~~~~-------------~~~~~-------- 253 (852)
T 4fdd_A 198 VNQFIISRTQALMLHIDSFIENLFALAGDE---EPEVRKNVCRALVMLLEVRMD-------------RLLPH-------- 253 (852)
T ss_dssp HHTTTTTTCHHHHTSHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHHHHCHH-------------HHGGG--------
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHhCHH-------------HHHHH--------
Confidence 988775432211101123566676666543 445777888887777642 11 00000
Q ss_pred cCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcc
Q 003008 333 ELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPID 412 (858)
Q Consensus 333 ~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~ 412 (858)
+
T Consensus 254 ----------------------------------------------l--------------------------------- 254 (852)
T 4fdd_A 254 ----------------------------------------------M--------------------------------- 254 (852)
T ss_dssp ----------------------------------------------H---------------------------------
T ss_pred ----------------------------------------------H---------------------------------
Confidence 0
Q ss_pred cccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHH--HcCcHHHHHHhh-----------cC-----
Q 003008 413 RQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFK--EAGAIKYLVKLL-----------DH----- 474 (858)
Q Consensus 413 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~--~~g~i~~Lv~LL-----------~~----- 474 (858)
.+.++.++..+++.++.++..|++.+..++.....+..+. -...++.|+..+ .+
T Consensus 255 --------~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~ 326 (852)
T 4fdd_A 255 --------HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGS 326 (852)
T ss_dssp --------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------
T ss_pred --------HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccc
Confidence 0133445556677788888889988888775443333221 124456666665 22
Q ss_pred ------CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc
Q 003008 475 ------SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP 548 (858)
Q Consensus 475 ------~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~ 548 (858)
.+..+|..++.+|..++.... ..+.. ..++.+..++.++ +..+|+.+..+|++++....+. .. -.-
T Consensus 327 ~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~-~~--~~l 398 (852)
T 4fdd_A 327 GGDDTISDWNLRKCSAAALDVLANVYR--DELLP-HILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQG-MI--PYL 398 (852)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHH-HG--GGH
T ss_pred ccccccccchHHHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHH-HH--HHH
Confidence 122468899999999986221 11111 2466677777744 4889999999999999743221 11 112
Q ss_pred CcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHH
Q 003008 549 VNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDT 627 (858)
Q Consensus 549 ~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~ 627 (858)
.+.++.++.++.++++.++..++ ++.+++...........-.+.++.|+..+.+.++.++..|+++|.++.......
T Consensus 399 ~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-- 476 (852)
T 4fdd_A 399 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-- 476 (852)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh--
Confidence 35688899999999999999999 998887532211011122467888999999999999999999999998543221
Q ss_pred HHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHh--
Q 003008 628 IISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKIL-- 705 (858)
Q Consensus 628 ~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l-- 705 (858)
+ .-....-+..++ ..+..... ... ......+..+....... ..........+..++
T Consensus 477 l-~~~l~~ll~~L~--~~l~~~~~----------------~~~--~~~~~ai~~l~~~~~~~-~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 477 L-VPYLAYILDTLV--FAFSKYQH----------------KNL--LILYDAIGTLADSVGHH-LNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp G-GGGHHHHHHHHH--HHHHHCCH----------------HHH--HHHHHHHHHHHHHHGGG-GCCHHHHHHHHHHHHHH
T ss_pred h-HhHHHHHHHHHH--HHHHHhCh----------------HHH--HHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHHHH
Confidence 1 112223344444 33322211 000 00001111111110000 000000000000000
Q ss_pred -hc-cCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhc-----------------cCCHHHHHHH
Q 003008 706 -KS-NVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIK-----------------SFSSEAREAA 766 (858)
Q Consensus 706 -~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~-----------------~~~~~v~~~A 766 (858)
.. ..+...-..+..|+..+...-+ ..+... ....++.++++++ .++.+++..+
T Consensus 535 ~~~l~d~~~~~~~~~~~l~~i~~~~g------~~~~~~--~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~ 606 (852)
T 4fdd_A 535 WNMLKDEDKDLFPLLECLSSVATALQ------SGFLPY--CEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVA 606 (852)
T ss_dssp HHHSCTTCTTHHHHHHHHHHHHHHHG------GGGHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHh------HhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHH
Confidence 00 0000000112233322221000 000000 1112333444432 2356789999
Q ss_pred HHHHHHhhhcCcchhhH-HHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhcCC
Q 003008 767 VIELNRIISEGVVDSTR-AVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLSQR 843 (858)
Q Consensus 767 ~~aL~nL~~~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~~~ 843 (858)
+.++..++..-.. ... .+.+.+.++.++++++++++.+|..+..++..++.. +.....+-. ++|.+.+.+...+
T Consensus 607 l~~l~~l~~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~--~lp~l~~~l~~~~ 683 (852)
T 4fdd_A 607 LDLLSGLAEGLGG-NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD--FMPILGTNLNPEF 683 (852)
T ss_dssp HHHHHHHHHHHGG-GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHH--HHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhH-hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHcCccc
Confidence 9999888764433 444 444678888889999999999999999999999753 222222222 6788888887777
Q ss_pred hhH-HHHHHHHhcC
Q 003008 844 PQW-TRALRLLRNL 856 (858)
Q Consensus 844 ~~~-~~al~~l~~l 856 (858)
+.+ ..|.+++..+
T Consensus 684 ~~v~~~a~~alg~i 697 (852)
T 4fdd_A 684 ISVCNNATWAIGEI 697 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 777 7777766543
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.60 E-value=1.9e-11 Score=137.63 Aligned_cols=460 Identities=12% Similarity=0.040 Sum_probs=300.5
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCch
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINV 178 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~ 178 (858)
...|+.|++.++++.-.+.|..|+..|..++..-. ..+ -.++++.|+..|+.+ |.++...++.+|.++-..++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 56789999988766777889999999999986432 334 378999999999876 77888889999988855322
Q ss_pred ------------------hHHHH-HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-c-hHHHHH-hCCCHHHHH
Q 003008 179 ------------------YRDLV-AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-K-HRLKIA-NTDILPLLI 236 (858)
Q Consensus 179 ------------------~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~-~~~~i~-~~g~i~~Lv 236 (858)
+.+.+ .+.+.|+.|+.+|++. +-.++.+++.+|..|+.+. + .+..|. .-++++.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 12233 3478899999999988 9999999999999999654 3 577777 459999999
Q ss_pred HHHccCCHHHHHHHHHHHHHHcCCcCc-hHHHHhCCCHHHHHHHHccCCC-CCHHHHHHHHHHHHHHhc-ChhhHHHHHH
Q 003008 237 KSLEDENMKVKEAAGGVLANLALSKSN-HNILVEAGVIPKLAMLLKANVE-GSKVIRKEARNALIELAK-DDYYRILIIE 313 (858)
Q Consensus 237 ~ll~~~~~~~~~~a~~~L~nL~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~-~~~~~~~~a~~aL~nl~~-~~~~~~~i~~ 313 (858)
.+|.+..+.+|..++..|.+|+.++.. +..+.-.|+++.|+.+++.+.. +.-.+.+.|+.+|.||.. |+.|+..+++
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999988654 4455667999999999976421 123467889999999999 6789999999
Q ss_pred cCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHH
Q 003008 314 EGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVR 393 (858)
Q Consensus 314 ~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~ 393 (858)
.|+++ .|..++..+.+. ..+... +. .-...+...++-|.... +. .. ..+.+|
T Consensus 253 t~~i~-~L~~LL~~~~~~--------~~W~~Q--k~---~N~~~~L~iIrlLv~~~-~~------~~--~t~~nQ----- 304 (651)
T 3grl_A 253 GSYIQ-RMKPWFEVGDEN--------SGWSAQ--KV---TNLHLMLQLVRVLVSPN-NP------PG--ATSSCQ----- 304 (651)
T ss_dssp TTCGG-GGGGGGCCCSCS--------SCCCHH--HH---HHHHHHHHHHHHHTCTT-SC------HH--HHHHHH-----
T ss_pred cCCHH-HHHHHhCCCccc--------cccHHH--HH---HHHHHHHHHHHHHhCCC-CC------CC--CCHHHH-----
Confidence 99999 499885321110 000000 00 00111222222222111 00 00 000111
Q ss_pred hhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC--CHHHHHHHHHHHHH-hcCChhhHHHHHHcC-------
Q 003008 394 IGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE--DERAIARAAESIAD-ISINEHMRMLFKEAG------- 463 (858)
Q Consensus 394 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g------- 463 (858)
..+...|++..|+.++.++ ...++..|..+++. +.+++.++..+.+..
T Consensus 305 ----------------------~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 305 ----------------------KAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp ----------------------HHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred ----------------------HHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 2233345888999998776 68899999999999 567888899888654
Q ss_pred --cHHHHHHhhcCC-cHHHHHHHHHHHHHhhc-ChhHHHHHHHc------C----ChH---HHHHhhcCCCccHHHHHHH
Q 003008 464 --AIKYLVKLLDHS-SDAVRLATTHALERLSV-SRGVCQIMEAE------G----VVH---PLVNTLKNLDISESLMEKT 526 (858)
Q Consensus 464 --~i~~Lv~LL~~~-~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~------g----~i~---~Li~lL~~~~~~~~~~~~a 526 (858)
.+..|+.++.+. ..++|.+++.++..... +++.+..+... + .+. .|..-+... ++---..|
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~--d~~~~wfA 440 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST--DSLSNWCA 440 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS--CHHHHHHH
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC--chHHHHHH
Confidence 333344446554 48999999999999987 66666666543 1 111 123333322 24334457
Q ss_pred HHHHHHhcCCCcccc---cccccccC------cCcHHHHHhhcC-CChhHHHHHH-HHHH-hhccccchhhhHhhcc-ch
Q 003008 527 LDILGRILDPSKEMK---SKFYDIPV------NGSEKGLDAAES-LDPSIELTGN-VIEA-AVSETTTSYGKVLDSV-FI 593 (858)
Q Consensus 527 ~~~L~~l~~~~~~~~---~~~~i~~~------~~i~~Li~ll~s-~d~~v~~~a~-~l~~-L~~~~~~~~~~i~~~g-~i 593 (858)
+.+|..+...+.+.. .+...... .-++.+..+|.. .++.+...=+ .|+. |..+...- ..+...| .+
T Consensus 441 avil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV-~dFL~~~s~l 519 (651)
T 3grl_A 441 AVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAV-THFLHNSANV 519 (651)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHH-HHHHHSTTHH
T ss_pred HHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHH-HHHHcCCchH
Confidence 778888776432111 11111111 123344555543 4454433333 3433 33444444 5555554 58
Q ss_pred hHHHHhhcC--C--CHHHHHHHHHHHHHhhc
Q 003008 594 GRMIGIMKT--S--YPDLQRKAASILEFITI 620 (858)
Q Consensus 594 ~~L~~lL~s--~--~~~v~~~a~~~L~~l~~ 620 (858)
+.|++.+.+ + ++.||-.|+-.|+.+..
T Consensus 520 ~~L~~~i~~~~~~~~~lvqGL~a~LLGi~ye 550 (651)
T 3grl_A 520 PFLTGQIAENLGEEEQLVQGLCALLLGISIY 550 (651)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHhh
Confidence 999988753 2 24477777777776654
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=1.1e-12 Score=153.67 Aligned_cols=399 Identities=13% Similarity=0.109 Sum_probs=261.0
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHH-cccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-h
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWK-YSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN-V 178 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~-la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~ 178 (858)
.|-+..+-+.|+ +++...+..+++-+.. +..+.+. ..+.+.+++++.+.+.+.|..+.-++.+++... +
T Consensus 12 ~~e~~~i~~~L~-~~~~~~k~~~~~kli~~~~~G~d~--------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e 82 (591)
T 2vgl_B 12 KGEIFELKAELN-NEKKEKRKEAVKKVIAAMTVGKDV--------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD 82 (591)
T ss_dssp SSHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHTTCCC--------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH
T ss_pred CChHHHHHHHHc-CCCHHHHHHHHHHHHHHHHCCCCh--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch
Confidence 577888999998 7777777766555543 3333321 334567888999999999998888888887632 2
Q ss_pred hHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 179 YRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 179 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
.. .-++..+.+-|+++ ++.++..|+.+|+++. .++.... .++.+.+++.+.++.+|..|+.++.++.
T Consensus 83 ~~-----~l~~n~l~kdL~~~--n~~ir~~AL~~L~~i~-~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~ 149 (591)
T 2vgl_B 83 MA-----IMAVNSFVKDCEDP--NPLIRALAVRTMGCIR-VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLH 149 (591)
T ss_dssp HH-----HTTHHHHGGGSSSS--SHHHHHHHHHHHHTCC-SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHcCCC--CHHHHHHHHHHHHcCC-hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHH
Confidence 21 12467888888887 9999999999999986 3332222 3578999999999999999999999998
Q ss_pred CCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-hhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008 259 LSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD-YYRILIIEEGLVPVPMVGADAYKSFRPELHSW 337 (858)
Q Consensus 259 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~ 337 (858)
..... .+.+.+.++.|.++|.+. .+.++..|+.+|.+++.+. +........+.+. .|+..+
T Consensus 150 ~~~p~--~~~~~~~~~~l~~lL~d~---d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~-~Ll~~l------------ 211 (591)
T 2vgl_B 150 DINAQ--MVEDQGFLDSLRDLIADS---NPMVVANAVAALSEISESHPNSNLLDLNPQNIN-KLLTAL------------ 211 (591)
T ss_dssp HSSCC--CHHHHHHHHHHHHTTSCS---CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH-HHHHHH------------
T ss_pred hhChh--hcccccHHHHHHHHhCCC---ChhHHHHHHHHHHHHHhhCCCccchhccHHHHH-HHHHcC------------
Confidence 74322 233346788999999653 4669999999999999753 2100000000111 122211
Q ss_pred CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008 338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL 417 (858)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (858)
...+.+.+...+.+|..+...+. ..
T Consensus 212 ----------~~~~~~~q~~il~~l~~l~~~~~-----------------------------------------~~---- 236 (591)
T 2vgl_B 212 ----------NECTEWGQIFILDCLSNYNPKDD-----------------------------------------RE---- 236 (591)
T ss_dssp ----------HHCCHHHHHHHHHHHHTSCCCSH-----------------------------------------HH----
T ss_pred ----------CCCCchHHHHHHHHHHHhCCCCh-----------------------------------------HH----
Confidence 01111222223333333321110 00
Q ss_pred ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC----ChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-
Q 003008 418 LPWIDGVARLVLILGLEDERAIARAAESIADISI----NEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV- 492 (858)
Q Consensus 418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~----~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~- 492 (858)
....++.+..++++.++.++..|++++..+.. +++..+.+. ..+.+.|+.+++ +++.+|..++.+|..+..
T Consensus 237 --~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 237 --AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp --HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHh
Confidence 01255666777888999999999999999653 334333332 455688888775 789999999999999986
Q ss_pred ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-
Q 003008 493 SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN- 571 (858)
Q Consensus 493 ~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~- 571 (858)
+++.-. ..+..+ +...+++..++..+..+|.+++.. .. . ...++.|..++.+.|.+++..++
T Consensus 313 ~p~~~~-----~~~~~~---~~~~~d~~~Ir~~al~~L~~l~~~---~n-v-----~~iv~~L~~~l~~~d~~~r~~~v~ 375 (591)
T 2vgl_B 313 RPEILK-----QEIKVF---FVKYNDPIYVKLEKLDIMIRLASQ---AN-I-----AQVLAELKEYATEVDVDFVRKAVR 375 (591)
T ss_dssp CCSTTT-----TCTTTT---SCCTTSCHHHHHHHHHHHHHTCCS---ST-H-----HHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred ChHHHH-----HHHHhh---eeccCChHHHHHHHHHHHHHHCCh---hh-H-----HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333111 011211 222244588999999999998862 11 1 12356677788888999999998
Q ss_pred HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 572 VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 572 ~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
+|..++...... ....++.|++++++.+..+...++.++..+..
T Consensus 376 aI~~la~~~~~~-----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 376 AIGRCAIKVEQS-----AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHTTCHHH-----HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChhH-----HHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 998887654321 13467889999998888888877777777654
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.48 E-value=2.7e-11 Score=141.83 Aligned_cols=404 Identities=14% Similarity=0.071 Sum_probs=267.0
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
.+.+.++++++ +++..+|.-+..++.+++..... . + .-++..+.+-|.++++.+|..|+.+|+++.. ++...
T Consensus 49 ~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e---~-~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~ 120 (591)
T 2vgl_B 49 SLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPD---M-A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITE 120 (591)
T ss_dssp GGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHH---H-H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCch---H-H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHH
Confidence 34567888887 88988898888888877653322 1 1 2456777788889999999999999998863 33222
Q ss_pred HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
. .++.+.+++.+. ++.+++.|+.+|.++... ++. +.+.+.++.|.++|.++++.++..|+.+|..++..
T Consensus 121 ~-----l~~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 121 Y-----LCEPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp H-----HHHHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred H-----HHHHHHHHcCCC--ChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 2 368899999988 999999999999999753 332 22357789999999999999999999999999876
Q ss_pred cCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCC
Q 003008 261 KSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWP 338 (858)
Q Consensus 261 ~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~ 338 (858)
.... ..-...+.++.|+..+... .+-.+...+++|..++.. +.....+ ++ ++..+
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~---~~~~q~~il~~l~~l~~~~~~~~~~~-----l~-~l~~~-------------- 247 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNEC---TEWGQIFILDCLSNYNPKDDREAQSI-----CE-RVTPR-------------- 247 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHTSCCCSHHHHHHH-----HH-HHTTC--------------
T ss_pred CCCccchhccHHHHHHHHHcCCCC---CchHHHHHHHHHHHhCCCChHHHHHH-----HH-HHHHH--------------
Confidence 4322 1001123456677766543 344666777888777753 2222222 23 24433
Q ss_pred CCCCcchhhcccCCchhhHHHHHHhccCCCC-CCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008 339 SLPDGTEIERTSQGPSKFGANELLLGLNVSD-KNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL 417 (858)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~-~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (858)
+++.+..++++|++++..+.... .+.+ .++.+
T Consensus 248 --------l~~~~~~V~~ea~~~i~~l~~~~~~~~~----~~~~~----------------------------------- 280 (591)
T 2vgl_B 248 --------LSHANSAVVLSAVKVLMKFLELLPKDSD----YYNML----------------------------------- 280 (591)
T ss_dssp --------SCSSTTHHHHHHHHHHHHSCCSCCBTTB----SHHHH-----------------------------------
T ss_pred --------HcCCChHHHHHHHHHHHHHhhccCCCHH----HHHHH-----------------------------------
Confidence 12223366777888888875211 0000 00000
Q ss_pred ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhH
Q 003008 418 LPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGV 496 (858)
Q Consensus 418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~ 496 (858)
.....+.|+.++ +++++++..++.+|..+. ..++.- . ..+..+..+. +++..+|..++..|.+++....
T Consensus 281 --~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~----~-~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~~n- 350 (591)
T 2vgl_B 281 --LKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEIL----K-QEIKVFFVKY-NDPIYVKLEKLDIMIRLASQAN- 350 (591)
T ss_dssp --HHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTT----T-TCTTTTSCCT-TSCHHHHHHHHHHHHHTCCSST-
T ss_pred --HHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHH----H-HHHHhheecc-CChHHHHHHHHHHHHHHCChhh-
Confidence 012445677665 488999999999999954 333211 0 1122222222 4448999999999999986433
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
... .++.|...+.+. +.+++..++.++.+++. .+... ....++.+++++...+..+...+. ++..
T Consensus 351 v~~-----iv~~L~~~l~~~--d~~~r~~~v~aI~~la~---~~~~~----~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 351 IAQ-----VLAELKEYATEV--DVDFVRKAVRAIGRCAI---KVEQS----AERCVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHH-----HHHHHHHHTTSS--CHHHHHHHHHHHHHHHT---TCHHH----HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHhcC--CHHHHHHHHHHHHHHHH---hChhH----HHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 222 355677777643 48899999999999997 22211 123478899999988888888888 8888
Q ss_pred hhccccchhhhHhhccchhHHHHhhc-CCCHHHHHHHHHHHHHhhcCC
Q 003008 576 AVSETTTSYGKVLDSVFIGRMIGIMK-TSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 576 L~~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~ 622 (858)
++...... ...+++.|++.+. ..++.++..++|+|+.....-
T Consensus 417 ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 417 IFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred HHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 77543321 1456788888886 467888888899998875543
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.48 E-value=4.8e-11 Score=146.71 Aligned_cols=638 Identities=11% Similarity=0.061 Sum_probs=349.0
Q ss_pred CcHHHHHHHhcCCC-CHHHHHHHHHHHHHcccCCccc---HHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhc
Q 003008 102 SYVALFVQMLGLDY-DPLDREQAVEALWKYSLGGKKC---IDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISS 175 (858)
Q Consensus 102 g~i~~lv~lL~~s~-d~~~~~~a~~~L~~la~~~~~~---~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~ 175 (858)
..++.|+..++ ++ ++.++..++.+|..++..-... ....+ ...++.++..+.++ +.++|..++.+|.++..
T Consensus 134 ~ll~~L~~~l~-~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 134 ELMKIMVDNTG-AEQPENVKRASLLALGYMCESADPQSQALVSSS--NNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46788888887 66 8899999999998887532211 01122 34677778888887 88999999999998743
Q ss_pred C-chh-HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-c-hHHHHHhCCCHHHHHHHHccCCHHHHHHHH
Q 003008 176 I-NVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-K-HRLKIANTDILPLLIKSLEDENMKVKEAAG 251 (858)
Q Consensus 176 ~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~ 251 (858)
. .++ .........++.|.+.+.+. ++.++..++.+|..+.... + ....+ ....++.+...+.+.++.++..++
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~ 287 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAE--DIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTV 287 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 111 00000112467777788777 9999999999999987432 2 12222 115566777778888999999999
Q ss_pred HHHHHHcCCcCc---------------h---HHHHhCCCHHHHHHHHccCC----CCCHHHHHHHHHHHHHHhcChhhHH
Q 003008 252 GVLANLALSKSN---------------H---NILVEAGVIPKLAMLLKANV----EGSKVIRKEARNALIELAKDDYYRI 309 (858)
Q Consensus 252 ~~L~nL~~~~~~---------------~---~~i~~~g~i~~Lv~ll~~~~----~~~~~~~~~a~~aL~nl~~~~~~~~ 309 (858)
..+..++..... . .... ...++.++..|+... ++...++..+..+|..++..-.
T Consensus 288 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--- 363 (861)
T 2bpt_A 288 EFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--- 363 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---
Confidence 999988754210 0 0111 345778888776432 1123477888999988886311
Q ss_pred HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhh
Q 003008 310 LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQH 389 (858)
Q Consensus 310 ~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~ 389 (858)
...++ .++..+. ..+...+...+..++.+|..++.... ...+...+
T Consensus 364 ----~~~~~-~l~~~l~------------------~~l~~~~~~~r~~a~~~l~~i~~~~~-----~~~~~~~l------ 409 (861)
T 2bpt_A 364 ----NHILE-PVLEFVE------------------QNITADNWRNREAAVMAFGSIMDGPD-----KVQRTYYV------ 409 (861)
T ss_dssp ----GGGHH-HHHHHHH------------------HHTTCSSHHHHHHHHHHHHHTSSSSC-----HHHHHHHH------
T ss_pred ----HhHHH-HHHHHHH------------------HHcCCCChhHHHHHHHHHHHHHcCCC-----HHHHHHHH------
Confidence 01122 1222210 01111121334457777777753321 00110000
Q ss_pred HHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--hhhHHHHHHcCcHHH
Q 003008 390 FLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISIN--EHMRMLFKEAGAIKY 467 (858)
Q Consensus 390 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~l~~~g~i~~ 467 (858)
...++.++..++++++.++..++++|+.++.. ++....-.-...++.
T Consensus 410 -------------------------------~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~ 458 (861)
T 2bpt_A 410 -------------------------------HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQA 458 (861)
T ss_dssp -------------------------------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 12567788889999999999999999985531 100000011345788
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhcC------hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc
Q 003008 468 LVKLLDHSSDAVRLATTHALERLSVS------RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK 541 (858)
Q Consensus 468 Lv~LL~~~~~~v~~~a~~aL~~Ls~~------~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~ 541 (858)
|+..++++ +.++..++++|.+++.. ......+ ...++.|+.++...+.+..++..+..++..+.....+..
T Consensus 459 l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~ 535 (861)
T 2bpt_A 459 CLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp HHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhh
Confidence 88888776 89999999999998762 1122222 134677788887544446788889999888876221110
Q ss_pred cccccccCcCcHHHHHhhcCC---------------ChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCH
Q 003008 542 SKFYDIPVNGSEKGLDAAESL---------------DPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYP 605 (858)
Q Consensus 542 ~~~~i~~~~~i~~Li~ll~s~---------------d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~ 605 (858)
.. .-...++.++..+... ..+++..++ ++.+++........... ...++.++.++++.+.
T Consensus 536 -~~--~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~ 611 (861)
T 2bpt_A 536 -AE--TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDS 611 (861)
T ss_dssp -HH--HHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTG
T ss_pred -HH--HHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCC
Confidence 00 0012345555555421 234555666 77776643322101111 2466778888888777
Q ss_pred -HHHHHHHHHHHHhhcCCcc-hHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHh
Q 003008 606 -DLQRKAASILEFITIIDPS-MDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLL 683 (858)
Q Consensus 606 -~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll 683 (858)
.++..++.++..++..... -..+ ...-+..++ ..+.+.+.+ + .......+..+.
T Consensus 612 ~~v~~~~~~~l~~l~~~~~~~~~~~----l~~i~~~l~--~~l~~~~~~---------v---------r~~a~~~l~~l~ 667 (861)
T 2bpt_A 612 AFIEDDVFYAISALAASLGKGFEKY----LETFSPYLL--KALNQVDSP---------V---------SITAVGFIADIS 667 (861)
T ss_dssp GGTHHHHHHHHHHHHHHHGGGGHHH----HHHHHHHHH--HHHHCTTSH---------H---------HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHH--HHhccccHH---------H---------HHHHHHHHHHHH
Confidence 8899999999888754221 1111 122233333 334332220 0 111111222222
Q ss_pred hhhhhhcccchHHHHHHHHHHhhcc-CCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCC---
Q 003008 684 DSKQFCQTINSTHFIKLLRKILKSN-VPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFS--- 759 (858)
Q Consensus 684 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~--- 759 (858)
......-..........+.+.++.. .+...+.....++..+....+ ..+... -...+|+++..+....
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~------~~~~~~--l~~~l~~l~~~~~~~~~~~ 739 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG------ADFIPY--LNDIMALCVAAQNTKPENG 739 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG------GGGHHH--HHHHHHHHHHHHTCCCSSS
T ss_pred HHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh------hhHHHH--HHHHHHHHHHHHhcCCCCC
Confidence 1111000000111111122222221 123344445555554432111 111110 1235677777776321
Q ss_pred --------HHHHHHHHHHHHHhhhcCcchhhHHHH--hcCCchHHHHHhhcC----ChHHHHHHHHHHHhhhc---Cccc
Q 003008 760 --------SEAREAAVIELNRIISEGVVDSTRAVA--SEGGIFPLVKLIEEG----SNRAVEAGLAILYNLSM---DSEN 822 (858)
Q Consensus 760 --------~~v~~~A~~aL~nL~~~~~~~~~~~l~--~~g~i~~Lv~lL~~~----~~~v~~~a~~aL~nL~~---~~~~ 822 (858)
..+|..++.++..+...-.. ....+. -...++.|.+.+.+. ++.+|..|+.+|..|+. .+..
T Consensus 740 d~d~~~~~~~vr~~~l~~~~~i~~~l~~-~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 740 TLEALDYQIKVLEAVLDAYVGIVAGLHD-KPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchH
Confidence 46888888888887643221 001111 012234444555553 78899999999999965 2322
Q ss_pred hHHHHHcCchHHHHHhhhc---CChhH-HHHHHHHhc
Q 003008 823 HSAIIAAGAVPALRRIVLS---QRPQW-TRALRLLRN 855 (858)
Q Consensus 823 ~~~i~~~g~v~~L~~ll~~---~~~~~-~~al~~l~~ 855 (858)
.......+++.|++.+.+ .+..+ +.|-|+++.
T Consensus 819 -~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~ 854 (861)
T 2bpt_A 819 -KQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQ 854 (861)
T ss_dssp -GGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred -HHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 222233567888888773 44445 666666543
No 47
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=1.2e-10 Score=143.49 Aligned_cols=442 Identities=12% Similarity=0.031 Sum_probs=258.0
Q ss_pred CCcHHHHHHHhcCCC--CHHHHHHHHHHHHHcccCCcc-cHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhc
Q 003008 101 DSYVALFVQMLGLDY--DPLDREQAVEALWKYSLGGKK-CIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISS 175 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~--d~~~~~~a~~~L~~la~~~~~-~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~ 175 (858)
...++.++..+. ++ ++.+|..++.+|..++..-.. .....+ ...++.+...+.++ +..+|..|+.+|.++..
T Consensus 127 ~~ll~~l~~~l~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 127 PELIPQLVANVT-NPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp TTHHHHHHHHHH-CTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 467889999997 77 889999999999988754211 111111 35677788888877 68899999999999865
Q ss_pred C-chh-HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHH
Q 003008 176 I-NVY-RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGG 252 (858)
Q Consensus 176 ~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~ 252 (858)
. ..+ .........++.+.+++.+. ++.++..++.+|..+... ++.-........++.++..+.+.++.++..++.
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~ 281 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3 111 11111112577777788776 889999999999998743 222122223367888888888888999999999
Q ss_pred HHHHHcCCcC-------------------chHHH--HhCCCHHHHHHHHccCC----CCCHHHHHHHHHHHHHHhcChhh
Q 003008 253 VLANLALSKS-------------------NHNIL--VEAGVIPKLAMLLKANV----EGSKVIRKEARNALIELAKDDYY 307 (858)
Q Consensus 253 ~L~nL~~~~~-------------------~~~~i--~~~g~i~~Lv~ll~~~~----~~~~~~~~~a~~aL~nl~~~~~~ 307 (858)
.+.+++.... ....+ .-...++.+++.+.... ++....+..+..+|..++..-..
T Consensus 282 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~ 361 (876)
T 1qgr_A 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence 9988875310 00000 00234667777775321 11234788888888888763211
Q ss_pred HHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhh
Q 003008 308 RILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSR 387 (858)
Q Consensus 308 ~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~ 387 (858)
.++. ..++ .+... +...+...+..++.+|..++.+.. ...+...
T Consensus 362 --~~~~-~~l~-~l~~~----------------------l~~~~~~~r~~a~~~l~~i~~~~~-----~~~~~~~----- 405 (876)
T 1qgr_A 362 --DIVP-HVLP-FIKEH----------------------IKNPDWRYRDAAVMAFGCILEGPE-----PSQLKPL----- 405 (876)
T ss_dssp --GGHH-HHHH-HHHHH----------------------TTCSSHHHHHHHHHHHHHTSSSSC-----HHHHHHH-----
T ss_pred --hhHH-HHHH-HHHHH----------------------ccCCChHHHHHHHHHHHHHHcCCC-----HHHHHHH-----
Confidence 1111 1122 12222 111122345557777877754321 0001000
Q ss_pred hhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhH-HHHHHcCcH
Q 003008 388 QHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI-NEHMR-MLFKEAGAI 465 (858)
Q Consensus 388 ~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~-~~l~~~g~i 465 (858)
....++.++..++++++.++..|+++|.+++. .+... ..-.-...+
T Consensus 406 --------------------------------~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 406 --------------------------------VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp --------------------------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred --------------------------------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHH
Confidence 01257788899999999999999999999553 22110 000113567
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhcChh----------------HHHHHHHcCChHHHHHhhcCCCc-c---------
Q 003008 466 KYLVKLLDHSSDAVRLATTHALERLSVSRG----------------VCQIMEAEGVVHPLVNTLKNLDI-S--------- 519 (858)
Q Consensus 466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~----------------~~~~l~~~g~i~~Li~lL~~~~~-~--------- 519 (858)
+.|+..+.++ +.++..++++|.+++.... ....+ ...++.|+.++...+. +
T Consensus 454 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~ 530 (876)
T 1qgr_A 454 QCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYE 530 (876)
T ss_dssp HHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHH
Confidence 7888888775 8999999999999875211 11111 1234444444443210 1
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHhcCCCcccccccccccCcCc
Q 003008 520 -----------------------------------------------ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGS 552 (858)
Q Consensus 520 -----------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i 552 (858)
.+++..+..++..+...-.. ....-.-...+
T Consensus 531 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~l~ 608 (876)
T 1qgr_A 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQISDVVM 608 (876)
T ss_dssp HHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHTTHHHHH
T ss_pred HHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh--hhhhHHHHHHH
Confidence 12233344444444431000 00000001235
Q ss_pred HHHHHhhcCCC--hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCC-CHHHHHHHHHHHHHhhcC
Q 003008 553 EKGLDAAESLD--PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTS-YPDLQRKAASILEFITII 621 (858)
Q Consensus 553 ~~Li~ll~s~d--~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~~l~~~ 621 (858)
+.++.++++.+ +.++..++ ++..++...........+ ..+|.++..+.+. ++.++..++++++.+...
T Consensus 609 ~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 680 (876)
T 1qgr_A 609 ASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRA 680 (876)
T ss_dssp HHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHH
Confidence 56677777653 46777777 887776533221122222 3678888888876 889999999999998753
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.47 E-value=2.9e-11 Score=136.14 Aligned_cols=404 Identities=12% Similarity=0.043 Sum_probs=264.0
Q ss_pred cCCCcHHHHHHHhcCC-CCHHHHHHHHHHHHHcccCCcc-----------------cHHHHHHhcCcHHHHHHHHccCCH
Q 003008 99 FGDSYVALFVQMLGLD-YDPLDREQAVEALWKYSLGGKK-----------------CIDYIMQFSGCINLTVNLLRSESS 160 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s-~d~~~~~~a~~~L~~la~~~~~-----------------~~~~ii~~~g~i~~Li~lL~~~~~ 160 (858)
++.++++.|+..|+.+ .|.++...++.+|.++-..++. ..+.++++.+.++.|+.+|++.+.
T Consensus 57 Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df 136 (651)
T 3grl_A 57 VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF 136 (651)
T ss_dssp HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH
T ss_pred hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH
Confidence 5678899999999744 4778888899999886543221 223566778999999999999999
Q ss_pred HHHHHHHHHHHHhhcCc-h-hHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch-HHHHHhCCCHHHHH
Q 003008 161 AACEAAAGLLRSISSIN-V-YRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLI 236 (858)
Q Consensus 161 ~~~~~a~~aL~nLs~~~-~-~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv 236 (858)
.+|..++..|..|+.+. + +++.|.. .++|+.|+.+|.+. ...++..++.+|.+|+.++.+ +..++-+|+++.|+
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf 214 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL 214 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence 99999999999998755 3 8999996 59999999999987 899999999999999987766 45555779999999
Q ss_pred HHHccCC----HHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHccCCCC---CH-H--HHHHHHHHHHHHhcC-
Q 003008 237 KSLEDEN----MKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLKANVEG---SK-V--IRKEARNALIELAKD- 304 (858)
Q Consensus 237 ~ll~~~~----~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~---~~-~--~~~~a~~aL~nl~~~- 304 (858)
.+++.+. ..+.+.|+.+|.||...+ .++..+.+.|+++.|..+|+.+.+. ++ . ....+..++.-|+..
T Consensus 215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~ 294 (651)
T 3grl_A 215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN 294 (651)
T ss_dssp HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998753 368899999999998764 6888999999999999999754322 11 1 111245555556552
Q ss_pred ------hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHH
Q 003008 305 ------DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK 378 (858)
Q Consensus 305 ------~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~ 378 (858)
..|+..+.+.|++. +|++++. .+. . ....+..+..++..+..++
T Consensus 295 ~~~~~t~~nQ~~~~~~g~l~-~Ll~ll~-~~~---------~----------p~~i~~~Al~tla~~irgN--------- 344 (651)
T 3grl_A 295 NPPGATSSCQKAMFQCGLLQ-QLCTILM-ATG---------V----------PADILTETINTVSEVIRGC--------- 344 (651)
T ss_dssp SCHHHHHHHHHHHHHTTHHH-HHHHHHT-CSS---------C----------CHHHHHHHHHHHHHHHTTC---------
T ss_pred CCCCCCHHHHHHHHHCCCHH-HHHHHHc-cCC---------C----------CHHHHHHHHHHHHHHHhCC---------
Confidence 25788999999999 5999741 000 0 1133344555665554333
Q ss_pred HhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCC-CHHHHHHHHHHHHH-hcCChhhH
Q 003008 379 MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLE-DERAIARAAESIAD-ISINEHMR 456 (858)
Q Consensus 379 ~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~-l~~~~~~~ 456 (858)
...|..++.... .. .++ ..-.+.-|+.++++. ..++|..|+.++.. +..+++.+
T Consensus 345 ------~~~Q~~fa~~~v---p~-------~~~--------~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q 400 (651)
T 3grl_A 345 ------QVNQDYFASVNA---PS-------NPP--------RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ 400 (651)
T ss_dssp ------HHHHHHHHHCEE---SS-------SSC--------EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ------HHHHHHHhhccC---CC-------CCC--------cChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 123334443321 00 000 011334455666554 57889999999988 67888877
Q ss_pred HHHHHc------C----c---HHHHHHhhcCCcHHHHHHHHHHHHHhhc-ChhHHHHHHHc------C-----ChHHHHH
Q 003008 457 MLFKEA------G----A---IKYLVKLLDHSSDAVRLATTHALERLSV-SRGVCQIMEAE------G-----VVHPLVN 511 (858)
Q Consensus 457 ~~l~~~------g----~---i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~------g-----~i~~Li~ 511 (858)
..++.. + . -..|..-+-+.++---..|+.+|..+-. +++.+..+.+- | .++.+..
T Consensus 401 ~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~ 480 (651)
T 3grl_A 401 GEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTN 480 (651)
T ss_dssp HHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHH
T ss_pred HHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHH
Confidence 777643 1 1 1234444445566555567777888777 67777665541 1 2555566
Q ss_pred hhcCCCccHHHHHHHHHHHHHhcCCCccccccc-ccccCcCcHHHHHhhcC
Q 003008 512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKF-YDIPVNGSEKGLDAAES 561 (858)
Q Consensus 512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~i~~~~~i~~Li~ll~s 561 (858)
+|.. ..+..++.--...|..-... ++.... .+.+...++.|+..+..
T Consensus 481 ~L~~-~~~~ri~vgyL~LL~~WL~e--~p~AV~dFL~~~s~l~~L~~~i~~ 528 (651)
T 3grl_A 481 ILSQ-GSKIQTRVGLLMLLCTWLSN--CPIAVTHFLHNSANVPFLTGQIAE 528 (651)
T ss_dssp HTTT-TCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHSTTHHHHHHHHHHS
T ss_pred HHhc-CCchhHHHHHHHHHHHHHhC--ChHHHHHHHcCCchHHHHHHHHHh
Confidence 6653 33444333222222222221 122111 23333457777776643
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.46 E-value=5.5e-12 Score=133.11 Aligned_cols=254 Identities=13% Similarity=0.093 Sum_probs=182.2
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
..++.|+.+|.++++.++..|+++|+++.. .++++.|+.+|.++++.+|..|+++|+.+.........
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-- 90 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-- 90 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH--
Confidence 378899999999999999999999999764 45799999999999999999999999999853321111
Q ss_pred HcCChHHHHH-hhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008 502 AEGVVHPLVN-TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE 579 (858)
Q Consensus 502 ~~g~i~~Li~-lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~ 579 (858)
.++.|.. ++. +.+..++..+..+|.++..... ......++.++.++.++++.++..++ ++.++..
T Consensus 91 ---l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~-------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~- 157 (280)
T 1oyz_A 91 ---VFNILNNMALN--DKSACVRATAIESTAQRCKKNP-------IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND- 157 (280)
T ss_dssp ---HHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHCG-------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred ---HHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccCC-------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-
Confidence 2233332 334 3458899999999999873110 01123477788888888888888887 7665421
Q ss_pred ccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCC
Q 003008 580 TTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPE 659 (858)
Q Consensus 580 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~ 659 (858)
.+.++.|++++.++++.++..|+++|+.+...
T Consensus 158 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------------------------------------- 189 (280)
T 1oyz_A 158 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYD-------------------------------------- 189 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCC--------------------------------------
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccC--------------------------------------
Confidence 24678888888888888888887777554210
Q ss_pred ccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccch
Q 003008 660 KYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPIN 739 (858)
Q Consensus 660 ~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 739 (858)
T Consensus 190 -------------------------------------------------------------------------------- 189 (280)
T 1oyz_A 190 -------------------------------------------------------------------------------- 189 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcC
Q 003008 740 MEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMD 819 (858)
Q Consensus 740 ~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~ 819 (858)
...+++.|+.+|+++++.||..|+.+|.++.. ...++.|+++|++++ +|..|+.+|.++..
T Consensus 190 ----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~- 250 (280)
T 1oyz_A 190 ----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD- 250 (280)
T ss_dssp ----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-
T ss_pred ----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-
Confidence 01135667777788888899999999887642 234588888887754 88888888888754
Q ss_pred ccchHHHHHcCchHHHHHhhhc-CChhH-HHHHHHHhcC
Q 003008 820 SENHSAIIAAGAVPALRRIVLS-QRPQW-TRALRLLRNL 856 (858)
Q Consensus 820 ~~~~~~i~~~g~v~~L~~ll~~-~~~~~-~~al~~l~~l 856 (858)
..+++.|..++.+ +++.. ..++..|.++
T Consensus 251 ---------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~~ 280 (280)
T 1oyz_A 251 ---------KTLLPVLDTMLYKFDDNEIITSAIDKLKRS 280 (280)
T ss_dssp ---------GGGHHHHHHHHTTSSCCHHHHHHHHHHTCC
T ss_pred ---------hhhhHHHHHHHhcCCCcHHHHHHHHHhhcC
Confidence 2467888888764 45555 7777777653
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.42 E-value=6.3e-11 Score=145.60 Aligned_cols=398 Identities=11% Similarity=0.050 Sum_probs=232.8
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhhcCc--hhH
Q 003008 104 VALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE-SSAACEAAAGLLRSISSIN--VYR 180 (858)
Q Consensus 104 i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~-~~~~~~~a~~aL~nLs~~~--~~~ 180 (858)
...++..|. ++++.+|..+..+|..++...... .. -...++.|+..+.++ ++.+++.++.+|..++..- +.+
T Consensus 97 k~~ll~~l~-~~~~~vr~~~~~~l~~i~~~~~p~--~~--w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~ 171 (861)
T 2bpt_A 97 KTNALTALV-SIEPRIANAAAQLIAAIADIELPH--GA--WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQ 171 (861)
T ss_dssp HHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHGGG--TC--CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSS
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHHHHhhCcc--cc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhh
Confidence 356778887 777889999999998887542110 00 134678888999888 9999999999999997632 211
Q ss_pred --HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 181 --DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 181 --~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
.... ...++.+...+.++..++.++..++.+|.++... +.+ .........++.|...+.++++.++..++.+|..
T Consensus 172 ~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 172 ALVSSS-NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp TTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0011 2246777777776422688999999999987421 111 0000011246677777888899999999999999
Q ss_pred HcCCcC--chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHH-HH----------------cCCc
Q 003008 257 LALSKS--NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILI-IE----------------EGLV 317 (858)
Q Consensus 257 L~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i-~~----------------~g~v 317 (858)
++.... ....+. ...++.+...+... .+.++..+...+..++........- .+ ...+
T Consensus 251 l~~~~~~~~~~~l~-~~l~~~~~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 251 IMSKYYTFMKPYME-QALYALTIATMKSP---NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHGGGCHHHHH-HTHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 975422 111111 14455555555443 4568889999998888653211100 00 1112
Q ss_pred ccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcc
Q 003008 318 PVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAI 397 (858)
Q Consensus 318 ~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~ 397 (858)
+. ++..+. +. +.. .++++..+...+...+.. +....
T Consensus 327 ~~-ll~~l~--~~-----------~~d----------------------~~d~~~~~r~~a~~~L~~------l~~~~-- 362 (861)
T 2bpt_A 327 PN-LLNLLT--RQ-----------NED----------------------PEDDDWNVSMSAGACLQL------FAQNC-- 362 (861)
T ss_dssp HH-HHHHTT--CC-----------CCC-----------------------CCCCCHHHHHHHHHHHH------HHHHH--
T ss_pred HH-HHHHHH--hc-----------ccc----------------------cccccCcHHHHHHHHHHH------HHHHc--
Confidence 21 222110 00 000 000000111111111111 11110
Q ss_pred cccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHcCcHHHHHHhhcCC
Q 003008 398 ESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINE--HMRMLFKEAGAIKYLVKLLDHS 475 (858)
Q Consensus 398 ~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--~~~~~l~~~g~i~~Lv~LL~~~ 475 (858)
..-.....++.+...++++++.++..|+.+++.++... +.-.... ...++.|+..+.++
T Consensus 363 ------------------~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~ 423 (861)
T 2bpt_A 363 ------------------GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ 423 (861)
T ss_dssp ------------------GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS
T ss_pred ------------------cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC
Confidence 00001125566777888999999999999999976432 2222222 35788999999999
Q ss_pred cHHHHHHHHHHHHHhhcC--hhH--HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc--C
Q 003008 476 SDAVRLATTHALERLSVS--RGV--CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP--V 549 (858)
Q Consensus 476 ~~~v~~~a~~aL~~Ls~~--~~~--~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~--~ 549 (858)
++.+|..++++|+.++.. +.. ...+ ...++.++..+.+ + ..++..++++|.+++....+. ....+.+ .
T Consensus 424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~-~--~~v~~~a~~al~~l~~~~~~~-~~~~l~~~~~ 497 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD-H--PKVATNCSWTIINLVEQLAEA-TPSPIYNFYP 497 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS-C--HHHHHHHHHHHHHHHHHHSSS-SSCGGGGGHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc-C--hHHHHHHHHHHHHHHHhcccc-cchhhHHHHH
Confidence 999999999999999862 110 1111 1346777777763 2 788999999999887521100 0001111 2
Q ss_pred cCcHHHHHhhcCCC--hhHHHHHH-HHHHhhccc
Q 003008 550 NGSEKGLDAAESLD--PSIELTGN-VIEAAVSET 580 (858)
Q Consensus 550 ~~i~~Li~ll~s~d--~~v~~~a~-~l~~L~~~~ 580 (858)
..++.++..+.+.| +.++..++ ++..++...
T Consensus 498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~ 531 (861)
T 2bpt_A 498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYA 531 (861)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence 34667778887544 67787777 887776543
No 51
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.37 E-value=1.6e-09 Score=133.23 Aligned_cols=364 Identities=12% Similarity=0.033 Sum_probs=212.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCchhHHH
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
+.++..|. ++++.+ ..++.++..++...... .- -...++.|+..+.++ ++.++..++.+|..++..-. .+.
T Consensus 93 ~~ll~~l~-~~~~~~-~~~~~~l~~i~~~~~~~--~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~ 165 (876)
T 1qgr_A 93 NYVLHTLG-TETYRP-SSASQCVAGIACAEIPV--NQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQ 165 (876)
T ss_dssp HHHHHHTT-TCCSSS-CHHHHHHHHHHHHHGGG--TC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHH
T ss_pred HHHHHHhC-CCcHHH-HHHHHHHHHHHHhhCcc--cc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-Hhh
Confidence 44777776 555556 77777777776532110 01 256789999999998 89999999999999975311 111
Q ss_pred HHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-cch-HHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 183 VAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-KKH-RLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 183 i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
+.. ...++.+...+.++..+..++..++.+|.++... +.+ .........++.+...+.+.+.+++..++.+|..+.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 111 2346777788876511578999999999998642 111 001111125677777787888999999999999997
Q ss_pred CCcCch-HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHH----HHHHcCCcccccccccccccCCcc
Q 003008 259 LSKSNH-NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRI----LIIEEGLVPVPMVGADAYKSFRPE 333 (858)
Q Consensus 259 ~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~----~i~~~g~v~~~Lv~ll~~~~~~~~ 333 (858)
...... ........++.++..+.+. .+.++..++..+.+++....... .....+.-+ ....
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~--~~~~--------- 311 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSD---IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP--EHTS--------- 311 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC--SSCC---------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc--cchh---------
Confidence 543211 1223335677777776543 45588889988888876431100 000111000 0000
Q ss_pred CCCCCCCCCcchhhcccCCchhhHHHHHHhc-cCCC-----CCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCC
Q 003008 334 LHSWPSLPDGTEIERTSQGPSKFGANELLLG-LNVS-----DKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQS 407 (858)
Q Consensus 334 l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~n-L~~~-----~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l 407 (858)
....+ .........+.. +... +++..+..++...+.. +.....
T Consensus 312 ----------~~~~~----~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~------l~~~~~----------- 360 (876)
T 1qgr_A 312 ----------KFYAK----GALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML------LATCCE----------- 360 (876)
T ss_dssp ----------CCHHH----HHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH------HHHHHG-----------
T ss_pred ----------HHHHH----HHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHH------HHHHCc-----------
Confidence 00000 000011111111 1110 1111222222222211 111110
Q ss_pred CCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-h-hhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHH
Q 003008 408 EFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISIN-E-HMRMLFKEAGAIKYLVKLLDHSSDAVRLATTH 485 (858)
Q Consensus 408 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~-~-~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~ 485 (858)
+ . .....++.+...+.++++.++..|+.+|+.++.. . +..... -...++.|+..+.++++.||..|++
T Consensus 361 ----~---~--~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~ 430 (876)
T 1qgr_A 361 ----D---D--IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAW 430 (876)
T ss_dssp ----G---G--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ----H---h--hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0 0 0123566777888899999999999999997643 2 322222 2458999999999999999999999
Q ss_pred HHHHhhc-ChhH---HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 486 ALERLSV-SRGV---CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 486 aL~~Ls~-~~~~---~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
+|++++. .+.. ...+ ...++.|+..+.+ + ..++..++++|.+++.
T Consensus 431 ~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~-~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 431 TVGRICELLPEAAINDVYL--APLLQCLIEGLSA-E--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTS-C--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhcccHHHH--HHHHHHHHHHHcC-C--HHHHHHHHHHHHHHHH
Confidence 9999987 2221 1111 1356777777764 2 7789999999998875
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.35 E-value=1e-10 Score=123.33 Aligned_cols=254 Identities=16% Similarity=0.106 Sum_probs=171.7
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchh
Q 003008 100 GDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVY 179 (858)
Q Consensus 100 ~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~ 179 (858)
..+.++.|+..|+ ++++.+|..|+++|.++.. .+.++.|+.++.++++.+|..|+++|..+......
T Consensus 21 ~~~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 21 KKLNDDELFRLLD-DHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHhhHHHHHHHHH-cCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 4567888999887 7888888888888887652 23467788888888888898899999888654322
Q ss_pred HHHHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccC-cchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Q 003008 180 RDLVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVD-KKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANL 257 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL 257 (858)
... .++.|.. +++++ ++.++..++++|.++... +... ...++.|+.++.++++.++..++++|.++
T Consensus 88 ~~~-----l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 88 EDN-----VFNILNNMALNDK--SACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HHH-----HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred chH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 111 2344442 45665 888898899999888632 2111 13467888888888888888888888876
Q ss_pred cCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCC
Q 003008 258 ALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSW 337 (858)
Q Consensus 258 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~ 337 (858)
.. .+.++.|+.++++. .+.++..++.+|.++..+..
T Consensus 156 ~~----------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~~~~------------------------------- 191 (280)
T 1oyz_A 156 ND----------KATIPLLINLLKDP---NGDVRNWAAFAININKYDNS------------------------------- 191 (280)
T ss_dssp -------------CCHHHHHHHHTCS---SHHHHHHHHHHHHHHTCCCH-------------------------------
T ss_pred CC----------HHHHHHHHHHHcCC---CHHHHHHHHHHHHhhccCcH-------------------------------
Confidence 43 34788888888654 34466677666655431100
Q ss_pred CCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccc
Q 003008 338 PSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTL 417 (858)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~ 417 (858)
T Consensus 192 -------------------------------------------------------------------------------- 191 (280)
T 1oyz_A 192 -------------------------------------------------------------------------------- 191 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHH
Q 003008 418 LPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVC 497 (858)
Q Consensus 418 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~ 497 (858)
..++.|+.+|+++++.++..|+++|+++.. ..+++.|+.++.+++ +|..++.+|+.+..
T Consensus 192 ----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----- 250 (280)
T 1oyz_A 192 ----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----- 250 (280)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-----
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-----
Confidence 123455666677778888888888888763 457888888887654 78888888888764
Q ss_pred HHHHHcCChHHHHHhhcCCCccHHHHHHHHHH
Q 003008 498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDI 529 (858)
Q Consensus 498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~ 529 (858)
...++.|..++.+... ..+...+...
T Consensus 251 -----~~~~~~L~~~l~~~~~-~~~~~~~~~~ 276 (280)
T 1oyz_A 251 -----KTLLPVLDTMLYKFDD-NEIITSAIDK 276 (280)
T ss_dssp -----GGGHHHHHHHHTTSSC-CHHHHHHHHH
T ss_pred -----hhhhHHHHHHHhcCCC-cHHHHHHHHH
Confidence 2467788888864333 3444444433
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.31 E-value=2.8e-09 Score=125.15 Aligned_cols=369 Identities=16% Similarity=0.125 Sum_probs=235.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHH
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKI 226 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i 226 (858)
+....++++.+.+.+.+..+.-.+.+++..++....+ ++..+.+-|+++ ++.++..|+++|+++.. ++ +
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~~--n~~vr~lAL~~L~~i~~-~~----~ 139 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNHS--TQFVQGLALCTLGCMGS-SE----M 139 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSCS--SSHHHHHHHHHHHHHCC-HH----H
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCC--CHhHHHHHHHHHHhcCC-HH----H
Confidence 5566778888999999988888888887654321112 478888888988 99999999999999984 22 2
Q ss_pred HhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-
Q 003008 227 ANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDD- 305 (858)
Q Consensus 227 ~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~- 305 (858)
. ...++.+.+++.+.++.++..|+.++.++..... .+++ +.++.+..++... .+.++..|+.+|..++.+.
T Consensus 140 ~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p---~~v~-~~~~~l~~lL~D~---d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 140 C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP---ELME-MFLPATKNLLNEK---NHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG---GGGG-GGGGGTTTSTTCC---CHHHHHHHHHHHHHHCCSHH
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh---HHHH-HHHHHHHHHhCCC---CHhHHHHHHHHHHHHHHhCh
Confidence 2 2457889999999999999999999999986422 1222 5667777777543 4568899999999999753
Q ss_pred hhHHHHHHcCCccccccccccc---ccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008 306 YYRILIIEEGLVPVPMVGADAY---KSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM 382 (858)
Q Consensus 306 ~~~~~i~~~g~v~~~Lv~ll~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l 382 (858)
+....+ ...++. |++++.- ....+.+ ..-...+.+.+...+.+|..+...+. ..-
T Consensus 212 ~~~~~~--~~~v~~-l~~~L~~~~~~~~~~~~----------~~~~~~~~~~q~~il~~L~~l~~~~~------~~~--- 269 (618)
T 1w63_A 212 DMLAHF--RKLVPQ-LVRILKNLIMSGYSPEH----------DVSGISDPFLQVRILRLLRILGRNDD------DSS--- 269 (618)
T ss_dssp HHHHHH--HTTHHH-HHHHHHHHHHSCCCTTT----------CSSSSSCHHHHHHHHHHHHHHTTTCH------HHH---
T ss_pred HHHHHH--HHHHHH-HHHHHHHHHcCCCCccc----------cccCCCCChHHHHHHHHHHHhCCCCH------HHH---
Confidence 321222 144553 5554210 0000000 00000112333334444444432210 000
Q ss_pred hhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHh------CCCCHHHHHHHHHHHHHhcCChhhH
Q 003008 383 VGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLIL------GLEDERAIARAAESIADISINEHMR 456 (858)
Q Consensus 383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL------~~~~~~v~~~a~~aL~~l~~~~~~~ 456 (858)
+...+.|..++ ++.+..++..|++++..+...+..+
T Consensus 270 --------------------------------------~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~ 311 (618)
T 1w63_A 270 --------------------------------------EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR 311 (618)
T ss_dssp --------------------------------------HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred --------------------------------------HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH
Confidence 00112222222 2234578899999999976544332
Q ss_pred HHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 457 MLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 457 ~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
..+++.|..++.++++.+|..|..+|..++.. +. .+ ......++.++.+++ ..++..+..+|..++.
T Consensus 312 -----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~--~~~~~~i~~~l~d~d--~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 312 -----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AV--QRHRSTIVDCLKDLD--VSIKRRAMELSFALVN 379 (618)
T ss_dssp -----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HH--GGGHHHHHHGGGSSC--HHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HH--HHHHHHHHHHccCCC--hhHHHHHHHHHHHHcc
Confidence 24688999999999999999999999999862 22 22 124567888888444 8999999999999987
Q ss_pred CCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHH
Q 003008 536 PSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASI 614 (858)
Q Consensus 536 ~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~ 614 (858)
. ... ...+..+...+.+.|.+++..++ +|..++...... . ...++.|+++++.....+...++..
T Consensus 380 ~---~nv------~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~----~~~v~~ll~lL~~~~~~v~~~~~~~ 445 (618)
T 1w63_A 380 G---NNI------RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-K----RWHIDTIMRVLTTAGSYVRDDAVPN 445 (618)
T ss_dssp S---SST------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-H----HHHHHHHHHHHHHTGGGSCSSHHHH
T ss_pred c---ccH------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-H----HHHHHHHHHHHHhccchhHHHHHHH
Confidence 2 111 11356778888888899998888 888887644221 0 1236778888876655454445555
Q ss_pred HHHhhc
Q 003008 615 LEFITI 620 (858)
Q Consensus 615 L~~l~~ 620 (858)
+..+..
T Consensus 446 l~~ii~ 451 (618)
T 1w63_A 446 LIQLIT 451 (618)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.30 E-value=4.7e-09 Score=134.05 Aligned_cols=669 Identities=10% Similarity=0.038 Sum_probs=329.6
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
-.++.++.-+. ++|+++|..|...|.+....+....+... ....++.+++.|.+.+..+|..|+.+|.+++..-.. .
T Consensus 6 ~~l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~-~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~ 82 (1230)
T 1u6g_C 6 YHISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDS-ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-Y 82 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-H
T ss_pred hHHHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-H
Confidence 34677787776 89999999999888876543321100001 235678889999999999999999999999864321 1
Q ss_pred HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchH------HHHHhCCCHHHHHHHHc-cCCHHHHHHHHHHH
Q 003008 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHR------LKIANTDILPLLIKSLE-DENMKVKEAAGGVL 254 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~------~~i~~~g~i~~Lv~ll~-~~~~~~~~~a~~~L 254 (858)
.. ...++.|+..+.++ ++.++..++.+|..++..-... ..-.....+|.|+..+. ++++.++..++.+|
T Consensus 83 -~~-~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 83 -QV-ETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp -HH-HHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred -HH-HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 11 22478888888877 7888999999999887321111 11112346889999998 57899999999999
Q ss_pred HHHcCC--cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCc
Q 003008 255 ANLALS--KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRP 332 (858)
Q Consensus 255 ~nL~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~ 332 (858)
..++.. ......+ ...++.|+..|.+. .+.+|..|+.+|..++...... . -...++ .|++.+. ....+
T Consensus 159 ~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~-~l~~~L~-~~~~~ 228 (1230)
T 1u6g_C 159 ADMLSRQGGLLVNFH--PSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSCGNI--V-FVDLIE-HLLSELS-KNDSM 228 (1230)
T ss_dssp HHHHHHTCSSCTTTH--HHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC-------CTTHHH-HHHHHHH-HTCSS
T ss_pred HHHHHHhHhHHHHHH--HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhcCHH--H-HHHHHH-HHHHHhc-cCCch
Confidence 999742 1111111 23456666666543 4568999999999998742211 0 011122 1333221 00000
Q ss_pred c--------CCCCCC-CCC----c-c-------hhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHH
Q 003008 333 E--------LHSWPS-LPD----G-T-------EIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFL 391 (858)
Q Consensus 333 ~--------l~~~~~-~~~----~-~-------~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L 391 (858)
. +..+.. .+. . . ..+...+...+..+..++..+...... .+. ..+..++. .+
T Consensus 229 ~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~~l~~li~-----~l 301 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK-EVY-PHVSTIIN-----IC 301 (1230)
T ss_dssp CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC-CCH-HHHHHHHH-----HH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH-HHH-HhHHHHHH-----HH
Confidence 0 000000 000 0 0 000000111111222222222110000 000 00011110 00
Q ss_pred HHhhcccccCCCCCCCCCCcc--ccccc--ccccc-cHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcH
Q 003008 392 VRIGAIESEDGRKPQSEFPID--RQLTL--LPWID-GVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAI 465 (858)
Q Consensus 392 ~~~~~~~~~~~~~~~l~~~~~--~~~~~--l~~~~-~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i 465 (858)
.+.-.. +... ....... +.+.. ...+. ....-...-.+..++++..|+.+|..++. .++.-. -+-...+
T Consensus 302 l~~l~~---d~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~l~ 376 (1230)
T 1u6g_C 302 LKYLTY---DPNY-NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP-EFYKTVS 376 (1230)
T ss_dssp TTCCCC---C-------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH-HHHTTTH
T ss_pred HHHhCC---CCCC-CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHH-HHHHHHH
Confidence 000000 0000 0000000 00000 00000 00000000012235678899999998553 222111 2225567
Q ss_pred HHHHHhhcCCcHHHHHHHHHHHHHhhcC--h---------------hHHHHHHH--cCChHHHHHhhcCCCccHHHHHHH
Q 003008 466 KYLVKLLDHSSDAVRLATTHALERLSVS--R---------------GVCQIMEA--EGVVHPLVNTLKNLDISESLMEKT 526 (858)
Q Consensus 466 ~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~---------------~~~~~l~~--~g~i~~Li~lL~~~~~~~~~~~~a 526 (858)
+.|+..+.+.+..+|..+..++..+... . .....+.. ...++.+...+++++ ..++..+
T Consensus 377 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~--~~vr~~~ 454 (1230)
T 1u6g_C 377 PALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS--VKTRQCC 454 (1230)
T ss_dssp HHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC--HHHHHHH
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCC--HHHHHHH
Confidence 8888888888899999999988877641 0 01111111 123455555677444 7788888
Q ss_pred HHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh--hHHHHHH-HHHHhhccccch-hhhHhhccchhHHHHhhcC
Q 003008 527 LDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP--SIELTGN-VIEAAVSETTTS-YGKVLDSVFIGRMIGIMKT 602 (858)
Q Consensus 527 ~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~--~v~~~a~-~l~~L~~~~~~~-~~~i~~~g~i~~L~~lL~s 602 (858)
..+|..+.....+.-.. .-...++.++..+.++++ +++..++ .+..+....... ..... ...+|.++..+.+
T Consensus 455 ~~~L~~l~~~~~~~l~~---~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d 530 (1230)
T 1u6g_C 455 FNMLTELVNVLPGALTQ---HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGD 530 (1230)
T ss_dssp HHHHHHHHHHSTTTTGG---GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTC
T ss_pred HHHHHHHHHHchhhhHH---HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHcc
Confidence 88888877521111000 012346777888887654 7887777 777665322111 01112 3568889999999
Q ss_pred CCHHHHHHHHHHHHHhhcC--C------cchHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHH
Q 003008 603 SYPDLQRKAASILEFITII--D------PSMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISA 674 (858)
Q Consensus 603 ~~~~v~~~a~~~L~~l~~~--~------~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~ 674 (858)
.+..++..++.++..++.. . .....+ ...-+..++ ..+...+.+.+. ...
T Consensus 531 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~----~~~ll~~ll--~~l~~~d~~~~v----------------r~~ 588 (1230)
T 1u6g_C 531 PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY----IKDLFTCTI--KRLKAADIDQEV----------------KER 588 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH----HHHHHHHHH--HHHSCSSSCHHH----------------HHH
T ss_pred cchHHHHHHHHHHHHHHHHhcCcccccccchHHH----HHHHHHHHH--HHHhccCCCHHH----------------HHH
Confidence 9998988888888888732 1 111111 112233333 334322221110 111
Q ss_pred hhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHH
Q 003008 675 GARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQ 754 (858)
Q Consensus 675 ~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~l 754 (858)
...++..+.......-......+...+...+. ....+.....++..+..... ...+ .......++.|.+.
T Consensus 589 a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~---~e~~r~~~~~al~~i~~~~~-----~~~~--~~~~~~i~~~L~~~ 658 (1230)
T 1u6g_C 589 AISCMGQIICNLGDNLGSDLPNTLQIFLERLK---NEITRLTTVKALTLIAGSPL-----KIDL--RPVLGEGVPILASF 658 (1230)
T ss_dssp HHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT---SSSHHHHHHHHHHHHTTCSS-----CCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhCcc-----ccch--HHHHHHHHHHHHHH
Confidence 11222222222111000111122222221111 11122233333333322110 0000 11124468888889
Q ss_pred hccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHH----HHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcC
Q 003008 755 IKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLV----KLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAG 830 (858)
Q Consensus 755 L~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv----~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g 830 (858)
+.+.+..+|.+++.+|..+...... .. ....+.+++ .++++.+..+...+..+|..|....+....-....
T Consensus 659 l~~~~~~~r~~a~~al~~l~~~~~~-~~----~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 733 (1230)
T 1u6g_C 659 LRKNQRALKLGTLSALDILIKNYSD-SL----TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS 733 (1230)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHCCT-TC----CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhcccc-cC----CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHh
Confidence 9999999999999999998765532 11 001112222 23456777888899999999976532211001234
Q ss_pred chHHHHHhhhcC
Q 003008 831 AVPALRRIVLSQ 842 (858)
Q Consensus 831 ~v~~L~~ll~~~ 842 (858)
+++.++.++.+.
T Consensus 734 ~l~~~~~~l~~~ 745 (1230)
T 1u6g_C 734 ILNELIGLVRSP 745 (1230)
T ss_dssp THHHHHHHHTCT
T ss_pred HHHHHHHHHcCc
Confidence 556666655543
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=3.6e-10 Score=113.61 Aligned_cols=92 Identities=27% Similarity=0.283 Sum_probs=66.3
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
..++.|+.+|+++++.++..|+.+|+.+.. .++++.|+.+|.++++.+|..++.+|+.+..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 79 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------- 79 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC---------
Confidence 367778888888888888888888877654 4577888888887778888888888877753
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
.+.++.|+.++.+++ ..++..+..+|..+..
T Consensus 80 -~~~~~~L~~~l~~~~--~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 80 -ERAVEPLIKALKDED--GWVRQSAAVALGQIGD 110 (211)
T ss_dssp -GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc
Confidence 235677777776433 6677777777766654
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.25 E-value=5.3e-10 Score=111.38 Aligned_cols=93 Identities=27% Similarity=0.271 Sum_probs=74.6
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHH
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIM 500 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l 500 (858)
.+..+.++.+|+++++.++..|+.+|+.+.. .++++.|+.+|.++++.+|..++.+|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence 3477889999999999999999999988665 4678899999988889999999999988763
Q ss_pred HHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 501 EAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 501 ~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
...++.|+.++.+++ ..++..+..+|.++..
T Consensus 75 --~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 75 --ERAVEPLIKALKDED--GWVRQSAAVALGQIGD 105 (201)
T ss_dssp --GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc
Confidence 245788888887443 7788888888877754
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.22 E-value=4.5e-08 Score=114.92 Aligned_cols=321 Identities=14% Similarity=0.098 Sum_probs=217.1
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHH
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNIL 267 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i 267 (858)
+...+++++.+. +...++.+--.+.+++..+.....+ .+..|.+-|.++++.++..|+++|.++.. ..+
T Consensus 71 ~~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~~e~~~l----~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----~~~ 139 (618)
T 1w63_A 71 GQLECLKLIASQ--KFTDKRIGYLGAMLLLDERQDVHLL----MTNCIKNDLNHSTQFVQGLALCTLGCMGS-----SEM 139 (618)
T ss_dssp GHHHHHHHHHSS--SHHHHHHHHHHHHHHCCCCHHHHHH----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----HHH
T ss_pred hHHHHHHHHcCC--chHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----HHH
Confidence 567777888887 8999998888888888654322222 45677888899999999999999999973 123
Q ss_pred HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchh
Q 003008 268 VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEI 346 (858)
Q Consensus 268 ~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~ 346 (858)
.+ ..++.+..+|++. .+.+|..|+.++.++.. +++... +.++. +.+++
T Consensus 140 ~~-~l~~~l~~~L~~~---~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~-l~~lL--------------------- 188 (618)
T 1w63_A 140 CR-DLAGEVEKLLKTS---NSYLRKKAALCAVHVIRKVPELME-----MFLPA-TKNLL--------------------- 188 (618)
T ss_dssp HH-HHHHHHHHHHHSC---CHHHHHHHHHHHHHHHHHCGGGGG-----GGGGG-TTTST---------------------
T ss_pred HH-HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHChHHHH-----HHHHH-HHHHh---------------------
Confidence 32 4567888888764 56799999999999987 554221 33442 44432
Q ss_pred hcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHH
Q 003008 347 ERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVAR 426 (858)
Q Consensus 347 ~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~ 426 (858)
...+..++..|+.+|..+...+.. ....+ ...++.
T Consensus 189 -~D~d~~V~~~Al~~L~~i~~~~~~------~~~~~--------------------------------------~~~v~~ 223 (618)
T 1w63_A 189 -NEKNHGVLHTSVVLLTEMCERSPD------MLAHF--------------------------------------RKLVPQ 223 (618)
T ss_dssp -TCCCHHHHHHHHHHHHHHCCSHHH------HHHHH--------------------------------------HTTHHH
T ss_pred -CCCCHhHHHHHHHHHHHHHHhChH------HHHHH--------------------------------------HHHHHH
Confidence 222224555677888777533210 00000 012333
Q ss_pred HHHHhC---------------CCCHHHHHHHHHHHHHhcCC-hhhHHHHHHcCcHHHHHHhhc------CCcHHHHHHHH
Q 003008 427 LVLILG---------------LEDERAIARAAESIADISIN-EHMRMLFKEAGAIKYLVKLLD------HSSDAVRLATT 484 (858)
Q Consensus 427 Lv~lL~---------------~~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~g~i~~Lv~LL~------~~~~~v~~~a~ 484 (858)
++.+|. ..++..+....++|..++.. ++.. ....+.|..+++ +.+..|...|+
T Consensus 224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~ 298 (618)
T 1w63_A 224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETV 298 (618)
T ss_dssp HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 443332 35888999999999997643 3322 334556666543 34578999999
Q ss_pred HHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh
Q 003008 485 HALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP 564 (858)
Q Consensus 485 ~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~ 564 (858)
.++..+...+..+. .+++.|..++.+++ ..+|..+..+|..+....++ .+ ......++..+.++|+
T Consensus 299 ~~i~~l~~~~~l~~-----~a~~~L~~~L~~~d--~~vr~~aL~~L~~i~~~~p~-----~~--~~~~~~i~~~l~d~d~ 364 (618)
T 1w63_A 299 LTIMDIKSESGLRV-----LAINILGRFLLNND--KNIRYVALTSLLKTVQTDHN-----AV--QRHRSTIVDCLKDLDV 364 (618)
T ss_dssp HHHHHSCCCHHHHH-----HHHHHHHHHHTCSS--TTTHHHHHHHHHHHHHHHHH-----HH--GGGHHHHHHGGGSSCH
T ss_pred HHHHhcCCCHHHHH-----HHHHHHHHHHhCCC--CchHHHHHHHHHHHHhhCHH-----HH--HHHHHHHHHHccCCCh
Confidence 99999876544332 35678888887444 78999999999988861110 01 1235578888999999
Q ss_pred hHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 565 SIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 565 ~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
+++..++ ++..++.+.... . .++.|...+.+.+.+++..++.+++.++..
T Consensus 365 ~Ir~~alelL~~l~~~~nv~--~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 365 SIKRRAMELSFALVNGNNIR--G-----MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHHHHCCSSSTH--H-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHcccccHH--H-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999 888887654322 2 347788888889999999999999999875
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.05 E-value=6.7e-09 Score=132.63 Aligned_cols=509 Identities=13% Similarity=0.101 Sum_probs=288.8
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhH-HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYR-DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~ 225 (858)
.++.|+.-+.+.|+++|..|...|.+....+... ..-.....++.|++.|.+. ++.++..|+.+|.+++..-.. ..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~--~~~vR~~A~~~L~~l~~~~~~-~~ 83 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK--NGEVQNLAVKCLGPLVSKVKE-YQ 83 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhCCH-HH
Confidence 3567778888999999999988888765432110 0001123578899999877 999999999999999753222 11
Q ss_pred HHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCch------HHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Q 003008 226 IANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNH------NILVEAGVIPKLAMLLKANVEGSKVIRKEARNALI 299 (858)
Q Consensus 226 i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~------~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~ 299 (858)
+ ...++.|+..+.++++.+|..++.+|..++..-... ..-.....+|.|...+... .....+..|+.+|.
T Consensus 84 ~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 84 V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEALDIMA 159 (1230)
T ss_dssp H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHH
Confidence 1 234677888888888899999999999987532211 1112235688888888631 24568899999999
Q ss_pred HHhcC-hhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHH
Q 003008 300 ELAKD-DYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAK 378 (858)
Q Consensus 300 nl~~~-~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~ 378 (858)
.++.. +..-... -...++ .|...+ ...+...+..++.+|..+.....+
T Consensus 160 ~~~~~~~~~l~~~-~~~ll~-~l~~~L----------------------~~~~~~vR~~a~~al~~l~~~~~~------- 208 (1230)
T 1u6g_C 160 DMLSRQGGLLVNF-HPSILT-CLLPQL----------------------TSPRLAVRKRTIIALGHLVMSCGN------- 208 (1230)
T ss_dssp HHHHHTCSSCTTT-HHHHHH-HHGGGG----------------------GCSSHHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHhHhHHHHH-HHHHHH-HHHHHH----------------------cCCcHHHHHHHHHHHHHHHHhcCH-------
Confidence 98852 1100000 000111 122221 111113344455555554321100
Q ss_pred HhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCC-HHHHHHHHHHHHHhcC-Chh-h
Q 003008 379 MNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLED-ERAIARAAESIADISI-NEH-M 455 (858)
Q Consensus 379 ~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~l~~-~~~-~ 455 (858)
.. ....++.++..|...+ ..++..++.++..++. .++ .
T Consensus 209 -------------------------------------~~--~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~ 249 (1230)
T 1u6g_C 209 -------------------------------------IV--FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 249 (1230)
T ss_dssp -----------------------------------------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGG
T ss_pred -------------------------------------HH--HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHH
Confidence 00 1124555665554332 3455667777777432 111 1
Q ss_pred HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHHHhhcCC-----------------
Q 003008 456 RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLVNTLKNL----------------- 516 (858)
Q Consensus 456 ~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li~lL~~~----------------- 516 (858)
.. .-...++.++..+.++++++|..+..++..++.. .+.+..+ ...++.++..+...
T Consensus 250 ~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~ 325 (1230)
T 1u6g_C 250 GE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDA 325 (1230)
T ss_dssp TT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-----------------
T ss_pred HH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccc
Confidence 10 1246789999999988899999999999998862 2222221 11344444443210
Q ss_pred ------------------CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008 517 ------------------DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV 577 (858)
Q Consensus 517 ------------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~ 577 (858)
+....+|+.+..+|..++....+. ..-.-...++.++..+.+.+++++..+. ++..++
T Consensus 326 ~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~---~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~ 402 (1230)
T 1u6g_C 326 DGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM---LPEFYKTVSPALISRFKEREENVKADVFHAYLSLL 402 (1230)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHTTCCTT---HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhH---HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 001235778888888887622110 0011123467777888888889998888 776665
Q ss_pred ccccc----------------hhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHH
Q 003008 578 SETTT----------------SYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDA 639 (858)
Q Consensus 578 ~~~~~----------------~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~ 639 (858)
..... ....+.. ...++.+.+.+++.++.++..++.+|+.+...... .+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~--~l----------- 469 (1230)
T 1u6g_C 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG--AL----------- 469 (1230)
T ss_dssp HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--TT-----------
T ss_pred HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh--hh-----------
Confidence 32110 0000000 12234444446666766666655555544221000 00
Q ss_pred HHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHH
Q 003008 640 IFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAA 719 (858)
Q Consensus 640 l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 719 (858)
.
T Consensus 470 --------------------------------------------------------------------------~----- 470 (1230)
T 1u6g_C 470 --------------------------------------------------------------------------T----- 470 (1230)
T ss_dssp --------------------------------------------------------------------------G-----
T ss_pred --------------------------------------------------------------------------H-----
Confidence 0
Q ss_pred HHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCC--HHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHH
Q 003008 720 CLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFS--SEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKL 797 (858)
Q Consensus 720 ~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~--~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~l 797 (858)
.. ....++.++..|.+.+ .+++..++.++..+.....++.... .-...+|.|+..
T Consensus 471 ----------------~~------l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~-~l~~llp~L~~~ 527 (1230)
T 1u6g_C 471 ----------------QH------IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP-HVQALVPPVVAC 527 (1230)
T ss_dssp ----------------GG------HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH-HHTTTHHHHHHH
T ss_pred ----------------HH------HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHh-HHHHHHHHHHHH
Confidence 00 0113566677776554 5899999999988765333311221 224678889999
Q ss_pred hhcCChHHHHHHHHHHHhhhcC--c-------cchHHHHHcCchHHHHHhh--hcCChhH-HHHHHHHhcC
Q 003008 798 IEEGSNRAVEAGLAILYNLSMD--S-------ENHSAIIAAGAVPALRRIV--LSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 798 L~~~~~~v~~~a~~aL~nL~~~--~-------~~~~~i~~~g~v~~L~~ll--~~~~~~~-~~al~~l~~l 856 (858)
+++.+..++..|+.++..++.. + ..... -..+++.++..+ .+.++.+ +.|+.++..+
T Consensus 528 l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 528 VGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred HcccchHHHHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 9999999988888888877632 1 11111 123567778877 5566666 6676666543
No 59
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.03 E-value=1.4e-08 Score=114.76 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=102.5
Q ss_pred cccccHHHHHHHhCCC--CHHHHHHHHHHHHHhcC-C-hhhHHHHHHcCcHHHHHHhhcCC--cHHHHHHHHHHHHHhhc
Q 003008 419 PWIDGVARLVLILGLE--DERAIARAAESIADISI-N-EHMRMLFKEAGAIKYLVKLLDHS--SDAVRLATTHALERLSV 492 (858)
Q Consensus 419 ~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~-~-~~~~~~l~~~g~i~~Lv~LL~~~--~~~v~~~a~~aL~~Ls~ 492 (858)
.|.+.++.|+..+.++ ++.++..++.+|..++. . ++.-.... ...++.+..++.++ +..||..|+.+++++..
T Consensus 125 ~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 125 QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 3566899999999988 99999999999999653 1 22111111 24778889999887 79999999999999764
Q ss_pred C-hhHH-HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHH
Q 003008 493 S-RGVC-QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTG 570 (858)
Q Consensus 493 ~-~~~~-~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a 570 (858)
. .+.- ......-.++.+...+. +.+..++..++.+|..+.....+. .... .+.+.++.++..+.+.+++++..+
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~~~v~~~a 279 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQY-METY-MGPALFAITIEAMKSDIDEVALQG 279 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGG-CTTT-TTTTHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHcCCchHHHHHH
Confidence 2 1110 01111113555556665 344889999999999987621111 0111 111456777778888889999888
Q ss_pred H-HHHHhhc
Q 003008 571 N-VIEAAVS 578 (858)
Q Consensus 571 ~-~l~~L~~ 578 (858)
+ .+..++.
T Consensus 280 ~~~l~~~~~ 288 (462)
T 1ibr_B 280 IEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 8 7766654
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.98 E-value=1.2e-08 Score=101.42 Aligned_cols=152 Identities=22% Similarity=0.183 Sum_probs=130.5
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
..++.|+.+|+++++.++..|+++|+.+.. ..+++.|+.+|.++++.+|..|+++|+++..
T Consensus 45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 105 (201)
T 3ltj_A 45 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------- 105 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence 368899999999999999999999999765 4689999999999999999999999999874
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET 580 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~ 580 (858)
...++.|+.++.++ +..++..++.+|.++.. ...++.|+.++.++++.++..++ +|..+.
T Consensus 106 -~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--- 166 (201)
T 3ltj_A 106 -ERAVEPLIKALKDE--DWFVRIAAAFALGEIGD-------------ERAVEPLIKALKDEDGWVRQSAADALGEIG--- 166 (201)
T ss_dssp -GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHTC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 24688899999754 48999999999999875 23588999999999999999998 777662
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
+...++.|..++.++++.++..|..+|..+.
T Consensus 167 --------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 167 --------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp --------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred --------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1236788999999999999999999998874
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.96 E-value=1e-08 Score=102.77 Aligned_cols=156 Identities=22% Similarity=0.188 Sum_probs=130.4
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIME 501 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~ 501 (858)
..++.|+.+|.++++.++..|+++|+.+.. .++++.|+.+|.++++.+|..++.+|+.+..
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------- 110 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------- 110 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence 478999999999999999999999999765 5689999999999999999999999999874
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET 580 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~ 580 (858)
.+.++.|+.++.+++ ..++..++.+|.++.. ...++.|+.++.++++.++..++ +|..+.
T Consensus 111 -~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--- 171 (211)
T 3ltm_A 111 -ERAVEPLIKALKDED--WFVRIAAAFALGEIGD-------------ERAVEPLIKALKDEDGWVRQSAADALGEIG--- 171 (211)
T ss_dssp -GGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---
T ss_pred -HHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---
Confidence 346889999997544 8999999999999965 23588999999999999999998 777652
Q ss_pred cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 581 TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 581 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+...++.|.++++++++.++..|..+|.++.....
T Consensus 172 --------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 172 --------GERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp --------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred --------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 23467889999999999999999999998876543
No 62
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.93 E-value=9.4e-06 Score=94.88 Aligned_cols=341 Identities=13% Similarity=0.077 Sum_probs=217.5
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHH
Q 003008 146 GCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLK 225 (858)
Q Consensus 146 g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~ 225 (858)
.+....++++.+.+.+.+..+.-++..++..++....+ ++..+.+=|+++ ++.++-.|+++|+++.. ++
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L----~iN~l~kDl~~~--n~~ir~lALr~L~~i~~-~e---- 142 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL----INNAIKNDLASR--NPTFMGLALHCIANVGS-RE---- 142 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH----HHHHHHHHHHSC--CHHHHHHHHHHHHHHCC-HH----
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH----HHHHHHHhcCCC--CHHHHHHHHHHhhccCC-HH----
Confidence 45677888999999999998888888888754321111 366777777887 99999999999999964 22
Q ss_pred HHhCCCHHHHHHHH--ccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 226 IANTDILPLLIKSL--EDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 226 i~~~g~i~~Lv~ll--~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
+.+ ..++.+.+++ .+.++.++..|+-++.++..... ..+...+.++.|.++|... .+.++..|+.+|..++.
T Consensus 143 ~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~---d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 143 MAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQ---HLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCS---CHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCC---CccHHHHHHHHHHHHHH
Confidence 222 3567888999 78899999999999999986432 2222247899999999643 45688899999999886
Q ss_pred -ChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhh
Q 003008 304 -DDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAM 382 (858)
Q Consensus 304 -~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~l 382 (858)
++..- ...++. +++. |.++...
T Consensus 217 ~~~~~~-----~~~~~~-~~~~-------------------------------------L~~ll~~-------------- 239 (621)
T 2vgl_A 217 KNPEEF-----KTSVSL-AVSR-------------------------------------LSRIVTS-------------- 239 (621)
T ss_dssp HCHHHH-----TTHHHH-HHHH-------------------------------------HHHHHHC--------------
T ss_pred hChHHH-----HHHHHH-HHHH-------------------------------------HHHHHhC--------------
Confidence 33210 011110 2211 1111000
Q ss_pred hhhhhhhHHHHhhcccccCCCCCCCCCC-cccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHH
Q 003008 383 VGRSRQHFLVRIGAIESEDGRKPQSEFP-IDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLF 459 (858)
Q Consensus 383 i~~~~~~~L~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l 459 (858)
+. .+ ++-.+. +.+++..|....+.|...+. +++.+..+
T Consensus 240 ------------~~------------~~~~~~~~~---------------~~~~~w~qi~il~ll~~~~~~~d~~~~~~l 280 (621)
T 2vgl_A 240 ------------AS------------TDLQDYTYY---------------FVPAPWLSVKLLRLLQCYPPPEDPAVRGRL 280 (621)
T ss_dssp ------------CS------------SSCSTTEET---------------TEESHHHHHHHHHHGGGSSSCSSHHHHHHH
T ss_pred ------------CC------------CCccchhhc---------------CCCCchHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 00 00 000000 11245566666666666543 23333333
Q ss_pred HHcCcHHHHHHhh---------cCCcH--HHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHH
Q 003008 460 KEAGAIKYLVKLL---------DHSSD--AVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLD 528 (858)
Q Consensus 460 ~~~g~i~~Lv~LL---------~~~~~--~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~ 528 (858)
.+ .++.++..+ .+.+. .|...|+.++..+..+++.... ++..|..++.++ +..+|..+..
T Consensus 281 ~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~-----~~~~L~~~L~~~--~~niry~aL~ 351 (621)
T 2vgl_A 281 TE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR-----ACNQLGQFLQHR--ETNLRYLALE 351 (621)
T ss_dssp HH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHSSCS--CHHHHHHHHH
T ss_pred HH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHhcCC--CcchHHHHHH
Confidence 32 233333222 22233 8889999999998765554332 456777888644 4899999999
Q ss_pred HHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHH
Q 003008 529 ILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPD 606 (858)
Q Consensus 529 ~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~ 606 (858)
+|..+....++. ..+ ..-...++..+. ++|+.++..++ .+..++.+.... ..+..|...+.+.+.+
T Consensus 352 ~l~~l~~~~~~~---~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~-------~Iv~eL~~yl~~~d~~ 419 (621)
T 2vgl_A 352 SMCTLASSEFSH---EAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQ-------QIVAEMLSYLETADYS 419 (621)
T ss_dssp HHHHHTTCTTTH---HHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHH-------HHHHHHHHHHHHCCHH
T ss_pred HHHHHHhccCcH---HHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHH-------HHHHHHHHHHHhcCHH
Confidence 999998732110 011 123556777788 89999999999 888887554322 2346677788888889
Q ss_pred HHHHHHHHHHHhhc
Q 003008 607 LQRKAASILEFITI 620 (858)
Q Consensus 607 v~~~a~~~L~~l~~ 620 (858)
++..++..++.++.
T Consensus 420 ~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 420 IREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888888764
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.90 E-value=1e-06 Score=103.03 Aligned_cols=390 Identities=15% Similarity=0.110 Sum_probs=230.2
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHH
Q 003008 103 YVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDL 182 (858)
Q Consensus 103 ~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~ 182 (858)
+....++++. +++...+.-+..++..++..+.. .++ =++..+.+=|.++++.++-.|+++|+++... +
T Consensus 75 ~~~~vvkl~~-s~~~~~Krl~YL~l~~~~~~~~e---~~~---L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-e---- 142 (621)
T 2vgl_A 75 GHMEAVNLLS-SNRYTEKQIGYLFISVLVNSNSE---LIR---LINNAIKNDLASRNPTFMGLALHCIANVGSR-E---- 142 (621)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHSCCCCHH---HHH---HHHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-H----
T ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHHccCCcH---HHH---HHHHHHHHhcCCCCHHHHHHHHHHhhccCCH-H----
Confidence 3566777887 88988888888888888875543 222 2356777778899999999999999999652 2
Q ss_pred HHhcCcHHHHHHHh--cCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC
Q 003008 183 VAECGAIEEITGLL--TRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALS 260 (858)
Q Consensus 183 i~~~g~i~~Lv~lL--~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~ 260 (858)
+.+ ..++.+.+++ .+. ++.+++.|+.++.++..... ..+...+.++.|.++|.+.++.++..|+.+|..++..
T Consensus 143 ~~~-~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 143 MAE-AFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHH-HHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh
Confidence 222 3578889999 776 99999999999999875321 1121258899999999988999999999999998754
Q ss_pred cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCC
Q 003008 261 KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSL 340 (858)
Q Consensus 261 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~ 340 (858)
+.. .+ ...++.++..|+. +....+.-..-...++++
T Consensus 218 ~~~--~~--~~~~~~~~~~L~~------------------ll~~~~~~~~~~~~~~~~---------------------- 253 (621)
T 2vgl_A 218 NPE--EF--KTSVSLAVSRLSR------------------IVTSASTDLQDYTYYFVP---------------------- 253 (621)
T ss_dssp CHH--HH--TTHHHHHHHHHHH------------------HHHCCSSSCSTTEETTEE----------------------
T ss_pred ChH--HH--HHHHHHHHHHHHH------------------HHhCCCCCccchhhcCCC----------------------
Confidence 321 11 1234445444421 110000000000000000
Q ss_pred CCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccc
Q 003008 341 PDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPW 420 (858)
Q Consensus 341 ~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 420 (858)
+.+.+......|..+...+ +....+ .+..++. +.+..... .+.
T Consensus 254 ----------~~w~qi~il~ll~~~~~~~-d~~~~~-~l~~~L~----~il~~~~~-------------~~k-------- 296 (621)
T 2vgl_A 254 ----------APWLSVKLLRLLQCYPPPE-DPAVRG-RLTECLE----TILNKAQE-------------PPK-------- 296 (621)
T ss_dssp ----------SHHHHHHHHHHGGGSSSCS-SHHHHH-HHHHHHH----HHHHHHHS-------------CCS--------
T ss_pred ----------CchHHHHHHHHHHHhCCCC-CHHHHH-HHHHHHH----HHHHhhcc-------------Ccc--------
Confidence 0112222233333332111 000000 0000000 00000000 000
Q ss_pred cccHHHHHHHhCCCC--HHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHH
Q 003008 421 IDGVARLVLILGLED--ERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQ 498 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~--~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~ 498 (858)
.. .+++.+ ..+...|+.++..+...++... .++..|..+|.++++.+|..+..+|..++.......
T Consensus 297 s~-------~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~ 364 (621)
T 2vgl_A 297 SK-------KVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHE 364 (621)
T ss_dssp CS-------SHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHH
T ss_pred cc-------cccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHH
Confidence 00 001112 2677888899888775554332 467789999998999999999999999987432122
Q ss_pred HHHHcCChHHHHHhhc-CCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHh
Q 003008 499 IMEAEGVVHPLVNTLK-NLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAA 576 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L 576 (858)
.+ ......++..+. +++ ..++..+..+|..++. +. +- ...+..+...+...|.+.+..++ ++..+
T Consensus 365 ~~--~~~~~~i~~~L~~d~d--~~Ir~~aL~lL~~l~~---~~-Nv-----~~Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 365 AV--KTHIETVINALKTERD--VSVRQRAVDLLYAMCD---RS-NA-----QQIVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp HH--HTTHHHHHHHHTTCCC--HHHHHHHHHHHHHHCC---HH-HH-----HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhccCCC--HhHHHHHHHHHHHHcC---hh-hH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33 235677778787 444 8899999999999987 21 11 12356677788888999888888 88877
Q ss_pred hccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 577 VSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 577 ~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
+...... ..-.+..|+++++.....+...++..+..+..
T Consensus 432 a~k~~~~-----~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~ 470 (621)
T 2vgl_A 432 AEKYAVD-----YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVI 470 (621)
T ss_dssp HHHHCSS-----THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred HHhcCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 6543221 01235667777765443343344444444443
No 64
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.90 E-value=3.2e-08 Score=111.84 Aligned_cols=387 Identities=11% Similarity=0.020 Sum_probs=242.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhhcCc-hhHHH
Q 003008 106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE--SSAACEAAAGLLRSISSIN-VYRDL 182 (858)
Q Consensus 106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~--~~~~~~~a~~aL~nLs~~~-~~~~~ 182 (858)
.++.-+. ++|..+|..|-..|.++... + ..+.+..|+.++.+. ++.+|..|+..|+|+.... ..+..
T Consensus 5 ~~L~~~~-s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 5 TILEKTV-SPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHTT-CSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 3444333 67889999998888764421 0 245667788888765 6889999999999985432 10000
Q ss_pred --------H---HhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccC--CHHHHHH
Q 003008 183 --------V---AECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDE--NMKVKEA 249 (858)
Q Consensus 183 --------i---~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~ 249 (858)
+ .....-..|+..+.++ ++.+ ..++.++..++..+.... .-.+.++.|++.+.++ ++.+++.
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~--~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~ 149 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTE--TYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKES 149 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCC--CSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCC--Cchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHH
Confidence 0 0011234577778776 6666 778888888875431110 1146789999999988 8999999
Q ss_pred HHHHHHHHcCCc--CchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccccccc
Q 003008 250 AGGVLANLALSK--SNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAY 327 (858)
Q Consensus 250 a~~~L~nL~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~ 327 (858)
++.+|..++..- ..-.... ...++.++..+++.. .++.+|..|+.++.++... ++-
T Consensus 150 al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~-----------------~~~--- 207 (462)
T 1ibr_B 150 TLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEF-----------------TKA--- 207 (462)
T ss_dssp HHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHTTT-----------------THH---
T ss_pred HHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHH-----------------HHH---
Confidence 999999998632 1111111 135677777776531 1345777888877776521 000
Q ss_pred ccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCC
Q 003008 328 KSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQS 407 (858)
Q Consensus 328 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l 407 (858)
++ .. .....
T Consensus 208 ------------------------------------~~--~~-------~~~~~-------------------------- 216 (462)
T 1ibr_B 208 ------------------------------------NF--DK-------ESERH-------------------------- 216 (462)
T ss_dssp ------------------------------------HH--TS-------HHHHH--------------------------
T ss_pred ------------------------------------hh--hh-------hHHHH--------------------------
Confidence 00 00 00000
Q ss_pred CCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHH
Q 003008 408 EFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHA 486 (858)
Q Consensus 408 ~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~a 486 (858)
..++.+..++.+++++++..++++|..+. ..++.-...+..+.++.++..+++.++.++..++..
T Consensus 217 --------------~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~ 282 (462)
T 1ibr_B 217 --------------FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (462)
T ss_dssp --------------HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred --------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 01233345567788899999999999854 222211111111677788888888899999999999
Q ss_pred HHHhhcChhH-------------------HHHHH--HcCChHHHHHhhcCCC-----ccHHHHHHHHHHHHHhcCCCccc
Q 003008 487 LERLSVSRGV-------------------CQIME--AEGVVHPLVNTLKNLD-----ISESLMEKTLDILGRILDPSKEM 540 (858)
Q Consensus 487 L~~Ls~~~~~-------------------~~~l~--~~g~i~~Li~lL~~~~-----~~~~~~~~a~~~L~~l~~~~~~~ 540 (858)
+..++..... ...+. -...+|.++..+...+ ++..++..+..+|..++. ..
T Consensus 283 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~---~~ 359 (462)
T 1ibr_B 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT---CC 359 (462)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHH---hc
Confidence 8888753210 00110 0234566666665321 123578889999988876 11
Q ss_pred ccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcccc-chhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHh
Q 003008 541 KSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETT-TSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFI 618 (858)
Q Consensus 541 ~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~-~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l 618 (858)
. + .+. ...++.+...+.+++..++..++ ++..++.... ....... ...+|.++.++.++++.++..|+++|.++
T Consensus 360 ~-~-~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~ 435 (462)
T 1ibr_B 360 E-D-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRI 435 (462)
T ss_dssp T-T-THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred c-H-HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1 111 13456666788888999999999 9998885432 1101111 46789999999999999999999999999
Q ss_pred hcC
Q 003008 619 TII 621 (858)
Q Consensus 619 ~~~ 621 (858)
+..
T Consensus 436 ~~~ 438 (462)
T 1ibr_B 436 CEL 438 (462)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.78 E-value=2.5e-08 Score=118.28 Aligned_cols=170 Identities=17% Similarity=0.137 Sum_probs=136.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccC--cchH
Q 003008 147 CINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVD--KKHR 223 (858)
Q Consensus 147 ~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~ 223 (858)
.+.++++.|+++++..|..|+++|.||+.++.+|..+...|+|..++. +|.++ +.+++..|+++|.||+.+ .+.+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhhcCchHH
Confidence 344567889999999999999999999998889999999999988765 77777 999999999999999954 5678
Q ss_pred HHHHhCCCHHHHHHHHccCC---------------------HHHHHHHHHHHHHHcCCc-CchHHHHhCCCHHHHHHHHc
Q 003008 224 LKIANTDILPLLIKSLEDEN---------------------MKVKEAAGGVLANLALSK-SNHNILVEAGVIPKLAMLLK 281 (858)
Q Consensus 224 ~~i~~~g~i~~Lv~ll~~~~---------------------~~~~~~a~~~L~nL~~~~-~~~~~i~~~g~i~~Lv~ll~ 281 (858)
..+...|++++|..++++.. .++.+.++.+|++|+... .....+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 88999999999999986421 134567888999998654 44457788899999999875
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCcc
Q 003008 282 ANVEGSKVIRKEARNALIELAKD-DYYRILIIEEGLVP 318 (858)
Q Consensus 282 ~~~~~~~~~~~~a~~aL~nl~~~-~~~~~~i~~~g~v~ 318 (858)
+.......++..|+.+|.+++.+ +.....+.+.|...
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~ 230 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETH 230 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSC
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHH
Confidence 54433456889999999999994 66677777766554
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.68 E-value=3.5e-08 Score=116.99 Aligned_cols=195 Identities=14% Similarity=0.057 Sum_probs=145.8
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHH-HhhcCCcHHHHHHHHHHHHHhhc--ChhHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLV-KLLDHSSDAVRLATTHALERLSV--SRGVCQI 499 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv-~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~ 499 (858)
.+.+++..|++++++.|..||++|++++.+++.++.+...|+|..++ .+|.+++.+||.+|+++|+||+. ..+.+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~ 114 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVH 114 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHH
Confidence 46678899999999999999999999988999999999999998865 57889999999999999999997 5788999
Q ss_pred HHHcCChHHHHHhhcCCCc------------c-------HHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc
Q 003008 500 MEAEGVVHPLVNTLKNLDI------------S-------ESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE 560 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~~------------~-------~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~ 560 (858)
+.+.|++++|..+++...+ . ..+.+.+..+|++|+..+.+ ....+...++++.++.++.
T Consensus 115 l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~--~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 115 LYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE--IHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHHHHHTCHHHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH--HHHHHHhcccHHHHHHHHH
Confidence 9999999999998852110 0 12334566788888763211 1224566788999998885
Q ss_pred CCC---hhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhh--cCCCHHHHHHHHHHHHHhh
Q 003008 561 SLD---PSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIM--KTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 561 s~d---~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~~l~ 619 (858)
+.+ .+++..++ +|+.+..+.....+.+.+.+....+..++ ...+...+..++++|.|+.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 433 57888888 99999887665546677766543322222 2233345677888888874
No 67
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.31 E-value=3.1e-05 Score=84.34 Aligned_cols=346 Identities=12% Similarity=0.121 Sum_probs=200.2
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCc---ccHHHHHHhcC-cHHHHHH-HHccCCHHHHHHHHHHHHHhhc
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGK---KCIDYIMQFSG-CINLTVN-LLRSESSAACEAAAGLLRSISS 175 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~---~~~~~ii~~~g-~i~~Li~-lL~~~~~~~~~~a~~aL~nLs~ 175 (858)
...+..++++|+.....++..+.+..+..+...++ ... .++.+.. ....+.. ++..++.-....+..++..++.
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~-~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTV-KFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHH-HHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHH-HHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 45678899999867777888888888888776654 322 3322222 2222222 2333333444555555555543
Q ss_pred Cch-hHHHHHhcCcHH--HHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCC--CHHHHHHHHcc---------
Q 003008 176 INV-YRDLVAECGAIE--EITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTD--ILPLLIKSLED--------- 241 (858)
Q Consensus 176 ~~~-~~~~i~~~g~i~--~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g--~i~~Lv~ll~~--------- 241 (858)
... ..+.+- +.+. -++..|...+ +...+..++.+|..|...++.|..+.+.+ .++++++.++.
T Consensus 155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 155 NGLHNVKLVE--KLLKNNNLINILQNIE-QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTTCCHHHHH--HHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred cCCccHhHHH--HHhhhHHHHHHhcccc-CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 221 111110 0112 3445555531 44556678999999999999999988543 36777655431
Q ss_pred ------C--CHHHHHHHHHHHHHHcCCcCchHHHHhCCCH--HHHHHHHccCCCCCHHHHHHHHHHHHHHhcCh-h----
Q 003008 242 ------E--NMKVKEAAGGVLANLALSKSNHNILVEAGVI--PKLAMLLKANVEGSKVIRKEARNALIELAKDD-Y---- 306 (858)
Q Consensus 242 ------~--~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~-~---- 306 (858)
+ ...++.+++-+++-|++.++....+...+.+ +.|+.+++... -+++.+-++.+|.||.... .
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~--KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI--KEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc--cchhHHHHHHHHHHHhcccchhhhh
Confidence 1 2456789999999999998877777776643 67777787642 3457889999999999843 1
Q ss_pred hHH-HHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhh
Q 003008 307 YRI-LIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGR 385 (858)
Q Consensus 307 ~~~-~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~ 385 (858)
... .++..++++ +++.+..+.++ + ....+....|...- +..++.+-.
T Consensus 310 ~~~~~~~~~~~l~--~l~~L~~rk~~-------------------D-edl~edl~~L~e~L---------~~~~~~lts- 357 (480)
T 1ho8_A 310 VIKQLLLLGNALP--TVQSLSERKYS-------------------D-EELRQDISNLKEIL---------ENEYQELTS- 357 (480)
T ss_dssp HHHHHHHHHCHHH--HHHHHHSSCCS-------------------S-HHHHHHHHHHHHHH---------HHHHHTCCH-
T ss_pred HHHHHHHHccchH--HHHHHhhCCCC-------------------c-HHHHHHHHHHHHHH---------HHHHHhccc-
Confidence 122 333344544 55554222211 1 11111111111000 000000000
Q ss_pred hhhhHH--HHhhcccccCCCCCCCCCCccccc-----ccccccc--cHHHHHHHhCC----------CCHHHHHHHHHHH
Q 003008 386 SRQHFL--VRIGAIESEDGRKPQSEFPIDRQL-----TLLPWID--GVARLVLILGL----------EDERAIARAAESI 446 (858)
Q Consensus 386 ~~~~~L--~~~~~~~~~~~~~~~l~~~~~~~~-----~~l~~~~--~i~~Lv~lL~~----------~~~~v~~~a~~aL 446 (858)
=.++. +.+|..+- .-.+.++.| ..+...+ .++.|+.+|.+ .|+.+..-||.=+
T Consensus 358 -fDeY~~El~sG~L~W-------SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Di 429 (480)
T 1ho8_A 358 -FDEYVAELDSKLLCW-------SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDI 429 (480)
T ss_dssp -HHHHHHHHHHTCCCC-------CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhcCCccc-------CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccH
Confidence 00000 01111000 000111111 1122222 78899999973 4788899999999
Q ss_pred HHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 447 ADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 447 ~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
+... ..|+.|..+-+.|+-+.++.|+.+++++||.+|..|+..+-.
T Consensus 430 gefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 430 THVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9944 688889888899999999999999999999999999887653
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.15 E-value=9.2e-05 Score=71.88 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=139.4
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHh-cCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC-hhHHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADI-SINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS-RGVCQI 499 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l-~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~ 499 (858)
+.+..|..+|.+.|+.++.++..+|..+ ..-+.......-...++.++.++++++..+.-.|..+|..|-.+ +-....
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 3678899999999999999999999994 33333333333356799999999999999999999999999772 322333
Q ss_pred HHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhc
Q 003008 500 MEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVS 578 (858)
Q Consensus 500 l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~ 578 (858)
+.+ .+..|.+++.+++ +..++.++..|..+.-. ... ...+..+.+++.|.|++++..|. ++.+++.
T Consensus 113 y~K--l~~aL~dlik~~~--~il~~eaae~Lgklkv~--~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 113 FLK--AAKTLVSLLESPD--DMMRIETIDVLSKLQPL--EDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHH--HHHHHHHHTTSCC--HHHHHHHHHHHHHCCBS--CCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred HHH--HHHHHHHHhcCCC--chHHHHHHHHhCcCCcc--cch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 333 4677888888555 88999999999998431 111 12467889999999999999999 8888875
Q ss_pred cccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCC
Q 003008 579 ETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIID 622 (858)
Q Consensus 579 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~ 622 (858)
..... .+. .+.+.-+-.+|++.|+.++..|+.++..+...+
T Consensus 180 ~S~D~--~i~-~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 180 SSADS--GHL-TLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp GCSSC--CCG-GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ccCCH--HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 44321 111 234456778899999999999999999998754
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.07 E-value=4.1e-07 Score=83.41 Aligned_cols=116 Identities=15% Similarity=0.079 Sum_probs=90.3
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHH
Q 003008 423 GVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEA 502 (858)
Q Consensus 423 ~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~ 502 (858)
.++.++.+|+++++.++..|+++|+.+.. ..++.|+.+|+++++.+|..|+++|+++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 56778899999999999999999987653 137999999999999999999999999874
Q ss_pred cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHH
Q 003008 503 EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIE 574 (858)
Q Consensus 503 ~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~ 574 (858)
...++.|+.++.+++ ..++..++++|.++.. ...++.|+.+++++|+.++..+. +|.
T Consensus 72 ~~a~~~L~~~L~d~~--~~VR~~A~~aL~~~~~-------------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ERAVEPLIKLLEDDS--GFVRSGAARSLEQIGG-------------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHHCC--THHHHHHHHHHHHHCS-------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHhCc-------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 124888999998555 8899999999999875 23588999999999999998887 654
No 70
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.97 E-value=0.0001 Score=80.24 Aligned_cols=351 Identities=13% Similarity=0.140 Sum_probs=196.9
Q ss_pred ccHHHHHHHhC-CCCHHHHHHHHHHHHHh-cCCh---hhHHHHHHcCc-HHHHHH-hhcCCcHHHHHHHHHHHHHhhc-C
Q 003008 422 DGVARLVLILG-LEDERAIARAAESIADI-SINE---HMRMLFKEAGA-IKYLVK-LLDHSSDAVRLATTHALERLSV-S 493 (858)
Q Consensus 422 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l-~~~~---~~~~~l~~~g~-i~~Lv~-LL~~~~~~v~~~a~~aL~~Ls~-~ 493 (858)
..+..++.+|+ ..++++++.....+..+ ..++ .....+.+..- ...+.. .+..++.-....+..++..++. .
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 37888999886 56788888888877774 4444 32233333322 222333 3344445555666666666654 2
Q ss_pred hhHHHHHHHcCChH--HHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcC--cHHHHHhhc----CC---
Q 003008 494 RGVCQIMEAEGVVH--PLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNG--SEKGLDAAE----SL--- 562 (858)
Q Consensus 494 ~~~~~~l~~~g~i~--~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~--i~~Li~ll~----s~--- 562 (858)
....+.+.. .+. .++..|...+ +...+..+..+|..|.. ....+..+...++ ++.++..+. +.
T Consensus 157 ~~~~~~l~~--l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~---~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 157 LHNVKLVEK--LLKNNNLINILQNIE-QMDTCYVCIRLLQELAV---IPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp TCCHHHHHH--HHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHT---SHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred CccHhHHHH--HhhhHHHHHHhcccc-CCchHHHHHHHHHHHhc---chhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 111111110 112 3445555322 13345578888888887 5555555555443 455543222 11
Q ss_pred ----------ChhHHHHHH-HHHHhhccccchhhhHhhccch--hHHHHhhcC-CCHHHHHHHHHHHHHhhcCCc-chHH
Q 003008 563 ----------DPSIELTGN-VIEAAVSETTTSYGKVLDSVFI--GRMIGIMKT-SYPDLQRKAASILEFITIIDP-SMDT 627 (858)
Q Consensus 563 ----------d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i--~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~-~~~~ 627 (858)
....+...+ |+.-|..+.+.. ..+...+.. +.|+.+++. .-+.+.+-++.+|.|+..... ....
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~-~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~ 309 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFA-NELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 309 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTSHHHH-HHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHcCHHHH-HHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhh
Confidence 133455666 666666665544 566655533 567777764 556799999999999987652 2222
Q ss_pred HHhh-chHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhh
Q 003008 628 IISA-DIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILK 706 (858)
Q Consensus 628 ~~~~-~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~ 706 (858)
++.. ...+.+-.++ ..|....|++++..+|+..+.- .-......+-+|+++..... ...+
T Consensus 310 ~~~~~~~~~~~l~~l--~~L~~rk~~Dedl~edl~~L~e--------~L~~~~~~ltsfDeY~~El~--------sG~L- 370 (480)
T 1ho8_A 310 VIKQLLLLGNALPTV--QSLSERKYSDEELRQDISNLKE--------ILENEYQELTSFDEYVAELD--------SKLL- 370 (480)
T ss_dssp HHHHHHHHHCHHHHH--HHHHSSCCSSHHHHHHHHHHHH--------HHHHHHHTCCHHHHHHHHHH--------HTCC-
T ss_pred HHHHHHHHccchHHH--HHHhhCCCCcHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHh--------cCCc-
Confidence 2111 1112123344 6777888877665444333210 00111223334554432111 1111
Q ss_pred ccCCCch--hhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhcc----------CCHHHHHHHHHHHHHhh
Q 003008 707 SNVPLHY--KDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKS----------FSSEAREAAVIELNRII 774 (858)
Q Consensus 707 ~~~~~~~--~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~----------~~~~v~~~A~~aL~nL~ 774 (858)
.+.|.+. +-|-+.+ .++ .. -+...+..|+++|.+ .++.+..-||.=++.++
T Consensus 371 ~WSP~H~se~FW~ENa-~kf--------------~e--~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefv 433 (480)
T 1ho8_A 371 CWSPPHVDNGFWSDNI-DEF--------------KK--DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVV 433 (480)
T ss_dssp CCCGGGGCHHHHHHHS-GGG--------------SS--GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccchhHHHHHH-HHH--------------Hh--cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHH
Confidence 1333332 3333322 111 10 133468899999973 47888888999999998
Q ss_pred hcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhh
Q 003008 775 SEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNL 816 (858)
Q Consensus 775 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL 816 (858)
...+. ....+-+.||=..+++++.+++++||..|+.|+..+
T Consensus 434 r~~P~-gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 434 ELLPE-SIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHCTT-HHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHCcc-hhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 77654 555777889988889999999999999999998554
No 71
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.97 E-value=0.0012 Score=78.27 Aligned_cols=314 Identities=11% Similarity=0.003 Sum_probs=194.5
Q ss_pred CCcHHHHHHHhcC--CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCC--------HHHHHHHHHHH
Q 003008 101 DSYVALFVQMLGL--DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSES--------SAACEAAAGLL 170 (858)
Q Consensus 101 ~g~i~~lv~lL~~--s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~--------~~~~~~a~~aL 170 (858)
.+++..|-+.|.. ++++.++.-|+.+|+-+..+..+ .++..|...|.+.+ +.++..|+..|
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---------HHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3557777777731 45778899999999987765432 13567777787655 66787888888
Q ss_pred HHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc-cCCHHHHHH
Q 003008 171 RSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE-DENMKVKEA 249 (858)
Q Consensus 171 ~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~-~~~~~~~~~ 249 (858)
+-+.....+. .+++.|..++... +....+.|+.+|+-+-....+.. ++..|+..+. ..+.++++.
T Consensus 462 Gla~~GS~~e------ev~e~L~~~L~dd--~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 462 GLAAMGSANI------EVYEALKEVLYND--SATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp HHHSTTCCCH------HHHHHHHHHHHTC--CHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHH
T ss_pred HHHhcCCCCH------HHHHHHHHHHhcC--CHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHH
Confidence 8875443222 2467788888876 66677788888877643333322 2355555543 347789999
Q ss_pred HHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCccccccccccccc
Q 003008 250 AGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKS 329 (858)
Q Consensus 250 a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~ 329 (858)
++..|..+....+ ..++.+++.|.... .+.+|..++.++.--+....|...| . .|+..+
T Consensus 528 aalgLGll~~g~~--------e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aI------q-~LL~~~---- 586 (963)
T 4ady_A 528 LAVGLALINYGRQ--------ELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAV------K-RLLHVA---- 586 (963)
T ss_dssp HHHHHHHHTTTCG--------GGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHH------H-HHHHHH----
T ss_pred HHHHHHhhhCCCh--------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHH------H-HHHHHh----
Confidence 9999988865443 34677888776532 4667777777766555544443322 1 133321
Q ss_pred CCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCC
Q 003008 330 FRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEF 409 (858)
Q Consensus 330 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~ 409 (858)
....+..+++.|+.+|..+..+..
T Consensus 587 -----------------~~d~~d~VRraAViaLGlI~~g~~--------------------------------------- 610 (963)
T 4ady_A 587 -----------------VSDSNDDVRRAAVIALGFVLLRDY--------------------------------------- 610 (963)
T ss_dssp -----------------HHCSCHHHHHHHHHHHHHHTSSSC---------------------------------------
T ss_pred -----------------ccCCcHHHHHHHHHHHHhhccCCH---------------------------------------
Confidence 000111334445555554432221
Q ss_pred CcccccccccccccHHHHHH-HhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHH
Q 003008 410 PIDRQLTLLPWIDGVARLVL-ILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHAL 487 (858)
Q Consensus 410 ~~~~~~~~l~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL 487 (858)
..++.++. +..+.++.+|..++.+|+.++ +++. ..++..|..++++.+..||+.|+.+|
T Consensus 611 ------------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 611 ------------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIAL 671 (963)
T ss_dssp ------------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 12344444 446789999999999999965 4332 23688899999999999999999999
Q ss_pred HHhhc--ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 488 ERLSV--SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 488 ~~Ls~--~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
+.+.. +......+. +....|.....+.+++...+--+..+.+-+..
T Consensus 672 G~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 672 SMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp HHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 99986 222100111 12344666666445556666666666665544
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.92 E-value=0.00041 Score=67.40 Aligned_cols=187 Identities=15% Similarity=0.145 Sum_probs=142.8
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-h
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-Y 179 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~ 179 (858)
.+.+..|.++|. +.|+.++.+++.+|.++-..-+...+... -...++.++.++++.++.+...|+++|..|-.+.+ .
T Consensus 32 e~~l~~L~~LL~-dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAG-EDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHh-ccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 457888999997 89999999999999998775333222333 36899999999999999999999999999976543 3
Q ss_pred HHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 180 RDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 180 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
...+.. .+.++..++.++ ++...++++..|..+......+ +.+..+..++.+.++.++..+.++|.|++.
T Consensus 110 ~~~y~K--l~~aL~dlik~~--~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESP--DDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSC--CHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHH--HHHHHHHHhcCC--CchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 333332 368899999988 9999999999999995433333 235678888988899999999999999987
Q ss_pred CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
..+....+ ...+.-+-+++++. .+.+++.|+.+|.++...
T Consensus 180 ~S~D~~i~--~~I~~eI~elL~~e---D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 180 SSADSGHL--TLILDEIPSLLQND---NEFIVELALDVLEKALSF 219 (265)
T ss_dssp GCSSCCCG--GGTTTTHHHHHTCS---CHHHHHHHHHHHHHHTTS
T ss_pred ccCCHHHH--HHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHcC
Confidence 54333211 13344566678775 466999999999999876
No 73
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.90 E-value=3.3e-05 Score=70.54 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=75.0
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHH
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAI 826 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i 826 (858)
.++.|+.+|+++++.+|..|+++|.++... ..++.|+++|+++++.||..|+.+|.++..
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------- 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------- 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------
Confidence 479999999999999999999999886421 236999999999999999999999998852
Q ss_pred HHcCchHHHHHhhhcCChhH-HHHHHHHhcC
Q 003008 827 IAAGAVPALRRIVLSQRPQW-TRALRLLRNL 856 (858)
Q Consensus 827 ~~~g~v~~L~~ll~~~~~~~-~~al~~l~~l 856 (858)
..+++.|..++.++++.+ ..|..+|.++
T Consensus 103 --~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 103 --ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 245789999999999988 8888888764
No 74
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.89 E-value=7.5e-05 Score=76.17 Aligned_cols=180 Identities=12% Similarity=0.142 Sum_probs=131.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc--ChhHHHHHH
Q 003008 426 RLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV--SRGVCQIME 501 (858)
Q Consensus 426 ~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~ 501 (858)
.+...+.+.++..|..|+..|..+. .++.....-. ...++.|..++. +.+..|+..|+.+++.|+. .+.....+
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~- 96 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA- 96 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH-
Confidence 4778889999999999999999943 3222110000 235777888894 8999999999999999996 22222222
Q ss_pred HcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccc
Q 003008 502 AEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSET 580 (858)
Q Consensus 502 ~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~ 580 (858)
...++.|+..+.++. ..+++.+..+|..+... ... ...++.+...+.+.++.++..++ .+..++...
T Consensus 97 -~~ilp~ll~~l~d~~--~~vr~~a~~aL~~~~~~---~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 97 -SACVPSLLEKFKEKK--PNVVTALREAIDAIYAS---TSL------EAQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp -HHHHHHHHHGGGCCC--HHHHHHHHHHHHHHHTT---SCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHc---CCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 236889999998655 88999999999999872 111 23477788889999999999999 888765432
Q ss_pred cch--hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 581 TTS--YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 581 ~~~--~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
... ..... ...+|.|+.++.+.+++++..|..++..+..
T Consensus 165 ~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 165 QPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 111 01112 2578999999999999999999999988864
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.89 E-value=0.00068 Score=80.47 Aligned_cols=271 Identities=11% Similarity=0.056 Sum_probs=169.6
Q ss_pred ccHHHHHHHhC---CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc--------HHHHHHHHHHHHHh
Q 003008 422 DGVARLVLILG---LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS--------DAVRLATTHALERL 490 (858)
Q Consensus 422 ~~i~~Lv~lL~---~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~--------~~v~~~a~~aL~~L 490 (858)
+++..|-..|. ++++.++.-|+.+|+-+...... .++..|...|.+++ +.+|..|+..|+..
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 36777777786 67899999999999996533221 15778888886554 77899999999987
Q ss_pred hcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc-CCChhHHHH
Q 003008 491 SVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE-SLDPSIELT 569 (858)
Q Consensus 491 s~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~-s~d~~v~~~ 569 (858)
..... +..+++.|..++.+.+ ..+++.++.+|+.+...+ .....+..++..+. ..+.++++.
T Consensus 465 ~~GS~------~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGT---------gn~~ai~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 465 AMGSA------NIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGT---------GKPEAIHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp STTCC------CHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred hcCCC------CHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhccc---------CCHHHHHHHHHHHhccCcHHHHHH
Confidence 53111 1124677788887444 567778888888764311 11224566666543 456677777
Q ss_pred HH-HHHHhhccccchhhhHhhccchhHHHHhhc-CCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhcc
Q 003008 570 GN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMK-TSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALE 647 (858)
Q Consensus 570 a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~ 647 (858)
++ +|..+....+ ..++.+++.|. +.++.++..++.+++.-..+..+...+ +.|+
T Consensus 528 aalgLGll~~g~~---------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aI---------q~LL------ 583 (963)
T 4ady_A 528 LAVGLALINYGRQ---------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAV---------KRLL------ 583 (963)
T ss_dssp HHHHHHHHTTTCG---------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHH---------HHHH------
T ss_pred HHHHHHhhhCCCh---------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHH---------HHHH------
Confidence 76 7765543222 24577777775 678888888888887665554444433 2222
Q ss_pred CCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhccc
Q 003008 648 DTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCL 727 (858)
Q Consensus 648 ~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~ 727 (858)
+....... ...+.. ..-++..+.
T Consensus 584 ------------------------------------~~~~~d~~-d~VRra------------------AViaLGlI~-- 606 (963)
T 4ady_A 584 ------------------------------------HVAVSDSN-DDVRRA------------------AVIALGFVL-- 606 (963)
T ss_dssp ------------------------------------HHHHHCSC-HHHHHH------------------HHHHHHHHT--
T ss_pred ------------------------------------HHhccCCc-HHHHHH------------------HHHHHHhhc--
Confidence 11110000 000000 000111110
Q ss_pred CCCCCCCCccchhhhhhhcchHHHHHHh-ccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHH
Q 003008 728 SGPDQDFENPINMEVTLYEAIPRLIEQI-KSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAV 806 (858)
Q Consensus 728 ~~~~~~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 806 (858)
.+ +...++.++.+| .+.++.+|..|+.||+.+..+++. ..++..|..++.|.++.||
T Consensus 607 ----------~g----~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vr 664 (963)
T 4ady_A 607 ----------LR----DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVR 664 (963)
T ss_dssp ----------SS----SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHH
T ss_pred ----------cC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHH
Confidence 00 113578888755 589999999999999988766543 1234667778889999999
Q ss_pred HHHHHHHHhhhcC
Q 003008 807 EAGLAILYNLSMD 819 (858)
Q Consensus 807 ~~a~~aL~nL~~~ 819 (858)
..|+.+|..+...
T Consensus 665 q~Ai~ALG~Ig~g 677 (963)
T 4ady_A 665 QAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998654
No 76
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.81 E-value=0.00013 Score=74.31 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=133.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhhcCc--hhHHH
Q 003008 106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLR-SESSAACEAAAGLLRSISSIN--VYRDL 182 (858)
Q Consensus 106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~-~~~~~~~~~a~~aL~nLs~~~--~~~~~ 182 (858)
.+.+.+. +.++..|..++..|..+............ ...++.|...+. +.+..++..|+.+|..|+..- .....
T Consensus 19 ~l~~~l~-s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFYDKLE-EKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THHHHHT-CSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHhhhc-cCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3778887 89999999999999888765211100011 245778888885 889999999999999998532 22221
Q ss_pred HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc-
Q 003008 183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK- 261 (858)
Q Consensus 183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~- 261 (858)
+ ...+|.+++.+.+. ++.++..+..+|.++....... ..++.|...+++.++.++..++..|..+....
T Consensus 96 ~--~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEK--KPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp H--HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred H--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 1 22589999999998 9999999999999987644321 24677888899889999999999999965432
Q ss_pred -C--chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 262 -S--NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 262 -~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
+ ....+ ...+|.|+.++... .+.+|..|..++..++..
T Consensus 166 ~~~~~~~~l--~~l~p~l~~~l~D~---~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 166 PTALNKKLL--KLLTTSLVKTLNEP---DPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGGCCHHHH--HHHHHHHHHHHTSS---CHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHH--HHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHH
Confidence 2 12222 25688999998643 566999999999998863
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.70 E-value=0.00073 Score=72.02 Aligned_cols=277 Identities=11% Similarity=0.059 Sum_probs=150.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHh
Q 003008 106 LFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAE 185 (858)
Q Consensus 106 ~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~ 185 (858)
..++++. ++|...|.-....+.+++...+. .++ ++..|.+=++++++-+|-.|+++|+++...+-.+
T Consensus 72 ~v~kl~~-s~d~~lKrLvYLyl~~~~~~~~e---~iL----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~----- 138 (355)
T 3tjz_B 72 AMTKLFQ-SNDPTLRRMCYLTIKEMSCIAED---VII----VTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQ----- 138 (355)
T ss_dssp HHHGGGG-CCCHHHHHHHHHHHHHHTTTSSC---GGG----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHH-----
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHhCCCHHH---HHH----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHH-----
Confidence 3466887 88888888888888888776433 233 4677788889999999999999999997655211
Q ss_pred cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchH
Q 003008 186 CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHN 265 (858)
Q Consensus 186 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~ 265 (858)
...+.+.+.+.+. +|.++..|+-+...|..... . ++ .+.+..+-+++.+.++.++..|+.+|..+...+ +.
T Consensus 139 -~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~~~~p--e-~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d--~~ 209 (355)
T 3tjz_B 139 -AIERYMKQAIVDK--VPSVSSSALVSSLHLLKCSF--D-VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND--RL 209 (355)
T ss_dssp -HHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTTCH--H-HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC--HH
T ss_pred -HHHHHHHHHcCCC--CHHHHHHHHHHHHHHhccCH--H-HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc--hH
Confidence 2457778889998 99999999999999875432 2 23 368999999999999999999999999997653 21
Q ss_pred HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCCCCCcch
Q 003008 266 ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTE 345 (858)
Q Consensus 266 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~ 345 (858)
.+..|+..+..+...++-.+-.-.+.+..++..++.. .....+. .|...
T Consensus 210 ------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~-~l~~~--------------------- 258 (355)
T 3tjz_B 210 ------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFD-FIESC--------------------- 258 (355)
T ss_dssp ------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------------CC---------------------
T ss_pred ------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHH-HHHHH---------------------
Confidence 3455666655432223433333333333333321000 1112222 13222
Q ss_pred hhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCcccccccccccccHH
Q 003008 346 IERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVA 425 (858)
Q Consensus 346 ~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~ 425 (858)
+++.+..+.++|+.++..+...+. .. + ..++.
T Consensus 259 -L~~~~~aVvyEa~k~I~~l~~~~~-------~~-----------~-----------------------------~~a~~ 290 (355)
T 3tjz_B 259 -LRNKHEMVVYEAASAIVNLPGCSA-------KE-----------L-----------------------------APAVS 290 (355)
T ss_dssp -CCCSSHHHHHHHHHHHTC----------------------------------------------------------CCC
T ss_pred -HcCCChHHHHHHHHHHHhccCCCH-------HH-----------H-----------------------------HHHHH
Confidence 233344678889999988743110 00 0 00233
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHH
Q 003008 426 RLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALE 488 (858)
Q Consensus 426 ~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~ 488 (858)
.|..+|.+++++++..|.+.|..+. ..++.. ...-.-+..++++++..+...|...|-
T Consensus 291 ~L~~fLss~d~niryvaLr~L~~l~~~~P~~v-----~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 291 VLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV-----TACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp THHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH-----HHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 4566788888899999999888855 333321 124456778888888888777665553
No 78
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.49 E-value=0.0018 Score=69.04 Aligned_cols=277 Identities=10% Similarity=0.041 Sum_probs=147.2
Q ss_pred HHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccc
Q 003008 465 IKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKF 544 (858)
Q Consensus 465 i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 544 (858)
-...++++.+++..+|+-.-..+.+++..++- .+ =++..|.+=+.+++ +.++-.|..+|+++..+. -
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~~~N--~~iR~lALRtL~~I~~~~---m--- 136 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMTGKE--DSYRGPAVRALCQITDST---M--- 136 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHHSSC--HHHHHHHHHHHHHHCCTT---T---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcCCCc--HhHHHHHHHHHhcCCCHH---H---
Confidence 34567899999999999999999998875321 11 24566677777565 889999999999998732 1
Q ss_pred ccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCc
Q 003008 545 YDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 545 ~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~ 623 (858)
-....+.+.+.+.+.+|.|+..|+ +...|...... +.+ ++++.+-+++.+.++.++..|+.+|..+...+.
T Consensus 137 ---~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 137 ---LQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp ---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred ---HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 112356677788899999999999 88888755432 222 688999999999999999999999998875431
Q ss_pred chHHHHhhchHHHHHHHHHhhhccCCCCCcCCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHH
Q 003008 624 SMDTIISADIESGLDAIFQQKALEDTDSDIEGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRK 703 (858)
Q Consensus 624 ~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~ 703 (858)
.. +..++ ..+.... ....-..+..++
T Consensus 209 --~a---------~~kLv--~~l~~~~----------------------------------------l~~~~~q~~llr- 234 (355)
T 3tjz_B 209 --LA---------VSKMI--SKFTRHG----------------------------------------LKSPFAYCMMIR- 234 (355)
T ss_dssp --HH---------HHHHH--HHHHSSC----------------------------------------CSCHHHHHHHHH-
T ss_pred --HH---------HHHHH--HHHhcCC----------------------------------------CcChHHHHHHHH-
Confidence 11 12222 0000000 000000000111
Q ss_pred HhhccCCCchhhHHHHHHHhhcccCCCCCCCCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhH
Q 003008 704 ILKSNVPLHYKDWVAACLVKLSCLSGPDQDFENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTR 783 (858)
Q Consensus 704 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~ 783 (858)
++. .+...+ +. ......++.+..+|++.++.|.-+|+.++..+.....
T Consensus 235 ~l~----------------~~~~~d-------~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~----- 282 (355)
T 3tjz_B 235 VAS----------------RQLEDE-------DG----SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA----- 282 (355)
T ss_dssp HHT----------------CC----------------------------CCCCCSSHHHHHHHHHHHTC-----------
T ss_pred HHH----------------Hhcccc-------ch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH-----
Confidence 100 000000 00 0012346667777889999999999999987643111
Q ss_pred HHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHHHHcCchHHHHHhhhcCChhH-HHHHHHH
Q 003008 784 AVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAIIAAGAVPALRRIVLSQRPQW-TRALRLL 853 (858)
Q Consensus 784 ~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~~al~~l 853 (858)
.+ ...++.+|..+|.++++.+|-.|+..|..+....+..-.- .-..+..++.++|... .-|...|
T Consensus 283 ~~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~----~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 283 KE-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA----CNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred HH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHccCCcHhHHHHHHHHh
Confidence 11 2345678888899999999999999998887654332111 2335667777777665 5554433
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.001 Score=67.93 Aligned_cols=185 Identities=12% Similarity=0.155 Sum_probs=129.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-hc-CChhhHHHHHH-cCcHHHHHHhh-cCCcHHHHHHHHHHHHHhhc--C-hhHH-H
Q 003008 427 LVLILGLEDERAIARAAESIAD-IS-INEHMRMLFKE-AGAIKYLVKLL-DHSSDAVRLATTHALERLSV--S-RGVC-Q 498 (858)
Q Consensus 427 Lv~lL~~~~~~v~~~a~~aL~~-l~-~~~~~~~~l~~-~g~i~~Lv~LL-~~~~~~v~~~a~~aL~~Ls~--~-~~~~-~ 498 (858)
+...+.+.++.-|..|...|.. +. ++++....-.+ ...+..|...+ ++.+..++..|+.+|+.|+. . +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5567799999999999999999 75 43332100000 13477788888 78899999999999999986 2 2322 2
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccc--cCcCcHHHHHhhcCCChhHHHHHH-HHHH
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDI--PVNGSEKGLDAAESLDPSIELTGN-VIEA 575 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~--~~~~i~~Li~ll~s~d~~v~~~a~-~l~~ 575 (858)
.... .+|.++..+.+.. ..+++.+..+|..++... . ..... -...++.++..+.+.++.++..++ .|..
T Consensus 101 y~~~--llp~ll~~l~dkk--~~V~~aa~~al~~i~~~~---~-~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 101 YVSL--VFTPLLDRTKEKK--PSVIEAIRKALLTICKYY---D-PLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp HHHH--HHHHHHHGGGCCC--HHHHHHHHHHHHHHHHHS---C-TTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHc---c-ccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3222 5889999998554 788898888888877511 0 00010 123577888889999999999998 8887
Q ss_pred hhccccc--h-hhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 576 AVSETTT--S-YGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 576 L~~~~~~--~-~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
++..... . .........+|.|.+++.+.+++++..|..++..+.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7754432 1 011122467899999999999999999999998875
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0034 Score=63.97 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=131.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-cccCCcccHHHHHHh-cCcHHHHHHHH-ccCCHHHHHHHHHHHHHhhcC---chhH
Q 003008 107 FVQMLGLDYDPLDREQAVEALWK-YSLGGKKCIDYIMQF-SGCINLTVNLL-RSESSAACEAAAGLLRSISSI---NVYR 180 (858)
Q Consensus 107 lv~lL~~s~d~~~~~~a~~~L~~-la~~~~~~~~~ii~~-~g~i~~Li~lL-~~~~~~~~~~a~~aL~nLs~~---~~~~ 180 (858)
+.+.++ +.++..|..|+..|.. +..+....... -.+ ...+..|.+.+ .+.+..++..|+.+|..|+.. +...
T Consensus 21 f~~~l~-s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 21 FQERIT-SSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp HHHHHT-CSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHhh-cCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 667777 8999999999999999 87542211000 001 24577888888 688999999999999999842 2222
Q ss_pred -HHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc-chHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHc
Q 003008 181 -DLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK-KHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 181 -~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
.... -.+|.+++.+.+. .+.++..+..+|.+++.+- ..-..-.-...++.|+..|++.++.+++.++.+|..+.
T Consensus 99 ~~y~~--~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 99 KDYVS--LVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHHH--HHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 2221 1589999999987 8999999888888887422 11000001135778888999999999999999999997
Q ss_pred CCcCch-HHH---HhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 259 LSKSNH-NIL---VEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 259 ~~~~~~-~~i---~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
...... ..+ .....+|.|.+++... .+.+|..|..+|..++.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~---~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT---QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHH
Confidence 653321 221 2257789999999654 56699999999988875
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.22 E-value=0.011 Score=55.09 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=132.5
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHhhc-ChhHHH
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADISI-NEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERLSV-SRGVCQ 498 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~-~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~Ls~-~~~~~~ 498 (858)
..+..++.+|.++-+.++.+|...+..++. .++.. .-.+..|+.+++ ++.-..-+..+.+++.++. .|+...
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~-----epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY-----EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH-----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHH
Confidence 378889999999999999999999999764 44433 234555666654 5667777888899999998 666433
Q ss_pred HHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhh
Q 003008 499 IMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAV 577 (858)
Q Consensus 499 ~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~ 577 (858)
. .+|.|..-.+-. ++.++.....+|..+...+++.- .+....+.+++.|+|..-+..++ .+..+.
T Consensus 107 ~-----vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~-------~~v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 107 S-----MIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM-------ASIVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp H-----HHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred h-----hHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH-------HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 3 466777666645 48899999999988876332211 23467788899988866666666 555443
Q ss_pred ccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHH
Q 003008 578 SETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTI 628 (858)
Q Consensus 578 ~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~ 628 (858)
.+.. + .+ .-.+|.|..||.+.+..++..|+.+|.+++.-++..+.+
T Consensus 173 en~~-~--yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki 218 (253)
T 2db0_A 173 ENSF-K--YV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV 218 (253)
T ss_dssp TTTH-H--HH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred ccCc-c--cc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH
Confidence 2221 1 11 346899999999999999999999999999877765555
No 82
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.02 E-value=0.0076 Score=62.51 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=120.0
Q ss_pred HHHhhcCCcHHHHHHHHHHHHH-hhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCccccccccc
Q 003008 468 LVKLLDHSSDAVRLATTHALER-LSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYD 546 (858)
Q Consensus 468 Lv~LL~~~~~~v~~~a~~aL~~-Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i 546 (858)
++.-|.+.+...++.+..-|.. +..+.+....++..+|+..|+.+.... +..++..+..+|.++.. .......+
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~---~v~Gm~gv 197 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLML---FVDGMLGV 197 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTT---SHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHh---ccccccch
Confidence 3344445666778888888888 566899999999999999999999855 48899999999999987 21111112
Q ss_pred c-cCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhcc----------chhHHHHhhc---CCCHHHHHHH
Q 003008 547 I-PVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSV----------FIGRMIGIMK---TSYPDLQRKA 611 (858)
Q Consensus 547 ~-~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g----------~i~~L~~lL~---s~~~~v~~~a 611 (858)
+ ....+.++.+++.+.+..+.+.++ .|..++...++....+.+.- -++.|+.+|. +.+.++|.+|
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a 277 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT 277 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence 2 334678889999998899999999 77777655443213332221 2678999997 7899999999
Q ss_pred HHHHHHhhcCCcc---hHHHHhhchHHHHHHHH
Q 003008 612 ASILEFITIIDPS---MDTIISADIESGLDAIF 641 (858)
Q Consensus 612 ~~~L~~l~~~~~~---~~~~~~~~~~~gl~~l~ 641 (858)
...+..+....+. ...+....+..|++.++
T Consensus 278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i 310 (339)
T 3dad_A 278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALV 310 (339)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHH
Confidence 9998888766444 33554444555665555
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.97 E-value=0.23 Score=46.29 Aligned_cols=190 Identities=16% Similarity=0.169 Sum_probs=134.1
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhhcCc
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-ESSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-~~~~~~~~a~~aL~nLs~~~ 177 (858)
.+...+..++.+|. ++-+.+|.+|+..+..++..-+.- + .-.+..|+.+++. +.-......+.+++.++...
T Consensus 29 ~d~~~l~~lI~~LD-DDlwtV~kNAl~vi~~i~~~~~el----~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 29 YDESVLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDL----Y--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp HCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCGGG----H--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhc-cHHHHHHHhHHHHHHHHHHHhHHH----H--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 46678889999997 777899999999999988754432 2 3455666667654 45555555788888888643
Q ss_pred hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc-CcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 178 VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV-DKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 178 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
+ .++ .+.+|.+..=.+-+ ++.++.....+|..+.. +|..-. +.+.-+..++.+++..-+-.++..
T Consensus 102 P---e~v-~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnF--- 167 (253)
T 2db0_A 102 P---ELV-KSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNF--- 167 (253)
T ss_dssp H---HHH-HHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHH---
T ss_pred H---HHH-HhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHH---
Confidence 2 111 13578888888888 99999999999988874 443333 345678888888875555444444
Q ss_pred HcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHH
Q 003008 257 LALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK-DDYYRILIIE 313 (858)
Q Consensus 257 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~-~~~~~~~i~~ 313 (858)
+..-.++...-+. -.+|.|..+|..+ ...++..|+.+|.|++. ++.-|..+.+
T Consensus 168 i~alGen~~~yv~-PfLprL~aLL~D~---deiVRaSaVEtL~~lA~~npklRkii~~ 221 (253)
T 2db0_A 168 IEAMGENSFKYVN-PFLPRIINLLHDG---DEIVRASAVEALVHLATLNDKLRKVVIK 221 (253)
T ss_dssp HHTCCTTTHHHHG-GGHHHHHGGGGCS---SHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHhccCccccC-cchHHHHHHHcCc---chhhhHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4444455544332 4578999999765 56699999999999998 7887766543
No 84
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.73 E-value=1.4 Score=54.14 Aligned_cols=108 Identities=7% Similarity=0.011 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHcccCC-----------cccHHHHHHhcCcHHHHHHHHccCCHHHHHHHH
Q 003008 100 GDSYVALFVQMLGL-DYDPLDREQAVEALWKYSLGG-----------KKCIDYIMQFSGCINLTVNLLRSESSAACEAAA 167 (858)
Q Consensus 100 ~~g~i~~lv~lL~~-s~d~~~~~~a~~~L~~la~~~-----------~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~ 167 (858)
..|....|+..+.. +.+..+|..|+..|.|..... +.. +..+ =..++..+.+++..+|..++
T Consensus 33 ~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~-k~~i-----k~~ll~~l~~~~~~ir~~l~ 106 (960)
T 1wa5_C 33 QDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANN-VELI-----KKEIVPLMISLPNNLQVQIG 106 (960)
T ss_dssp STTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHH-HHHH-----HHHHHHHHHHSCHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH-HHHH-----HHHHHHHHHhCCHHHHHHHH
Confidence 35677888888742 346789999999998875321 111 1223 23455555556788999999
Q ss_pred HHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc
Q 003008 168 GLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV 218 (858)
Q Consensus 168 ~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~ 218 (858)
.++..|+..+-.. .....++.|+++++++ ++..+..++.+|..++.
T Consensus 107 ~~ia~ia~~d~p~---~Wp~ll~~L~~~l~s~--~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 107 EAISSIADSDFPD---RWPTLLSDLASRLSND--DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HHHHHHHHHHSTT---TCTTHHHHHHTTCCSS--CTTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhCcc---chhHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 9999987643110 1245789999999887 77788889999999875
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.59 E-value=0.045 Score=56.76 Aligned_cols=148 Identities=11% Similarity=0.051 Sum_probs=112.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 003008 149 NLTVNLLRSESSAACEAAAGLLRS-ISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA 227 (858)
Q Consensus 149 ~~Li~lL~~~~~~~~~~a~~aL~n-Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~ 227 (858)
..+++.|.+++...+..++.-|.. ++.+.+.-..++..+|+..|+.+.... +...+.+++++|.+|=.+...-.-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchh
Confidence 345566667777777778888888 566678899999999999999999988 99999999999999988877765555
Q ss_pred -hCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcC-chHHHHh--------CC--CHHHHHHHHccCCCCCHHHHHHHH
Q 003008 228 -NTDILPLLIKSLEDENMKVKEAAGGVLANLALSKS-NHNILVE--------AG--VIPKLAMLLKANVEGSKVIRKEAR 295 (858)
Q Consensus 228 -~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~-~~~~i~~--------~g--~i~~Lv~ll~~~~~~~~~~~~~a~ 295 (858)
....|.-+..++.+.+..+...|+..|..++...+ +...+.+ .| -.+.|+.+|+..+.....++.++.
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 55678889999998889999999999999986654 3322222 12 278999999743323444666665
Q ss_pred HHH
Q 003008 296 NAL 298 (858)
Q Consensus 296 ~aL 298 (858)
..+
T Consensus 279 tLI 281 (339)
T 3dad_A 279 TLI 281 (339)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 86
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.94 E-value=0.11 Score=62.47 Aligned_cols=299 Identities=9% Similarity=0.086 Sum_probs=169.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcch--HHHHHh
Q 003008 151 TVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKH--RLKIAN 228 (858)
Q Consensus 151 Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~--~~~i~~ 228 (858)
+++.+...+...+..++..+.++..++..- .....+.+..|.+.+... ... +.|+.++..||..... ...-.-
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k--~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDK--KTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSH--HHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhcc--CCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 445555544444556777777775533110 011125678888888764 333 8899999999843321 111222
Q ss_pred CCCHHHHHHHHccCCHHHHHHHHHHHHHHcCC-cCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhh
Q 003008 229 TDILPLLIKSLEDENMKVKEAAGGVLANLALS-KSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYY 307 (858)
Q Consensus 229 ~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~ 307 (858)
-+.++.++..+.+....++..|..++..+... +... + ...+|.|+..|.+.. ..+ .+..|+.++..|+.....
T Consensus 94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~-kw~-~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETN-KWQ-EKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCC-CHH-HHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhcccc-chH-HHHHHHHHHHHHHHHhHH
Confidence 26789999998888888998888887777543 2211 1 345789999886542 223 567888889888864222
Q ss_pred HHHHHHcCCcccccccccccccCCccCCCCCCCCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhh
Q 003008 308 RILIIEEGLVPVPMVGADAYKSFRPELHSWPSLPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSR 387 (858)
Q Consensus 308 ~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~ 387 (858)
.-...=...+|. +.+. +...+..+...+..++..++.--+|
T Consensus 168 ~~~~~~~~~~p~-~~~~----------------------~~d~k~~v~~~~~~~~~~~~~~~~n---------------- 208 (986)
T 2iw3_A 168 QVALRMPELIPV-LSET----------------------MWDTKKEVKAAATAAMTKATETVDN---------------- 208 (986)
T ss_dssp HHHHHHHHHHHH-HHHH----------------------TTCSSHHHHHHHHHHHHHHGGGCCC----------------
T ss_pred HHHHhccchhcc-hHhh----------------------cccCcHHHHHHHHHHHHHHHhcCCC----------------
Confidence 222222333442 3221 0110112223333333222110000
Q ss_pred hhHHHHhhcccccCCCCCCCCCCcccccccccccccHHHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHH
Q 003008 388 QHFLVRIGAIESEDGRKPQSEFPIDRQLTLLPWIDGVARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKY 467 (858)
Q Consensus 388 ~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~ 467 (858)
.+ .+..+|.|+.-+.+++. ..+|...|+....-.+...... +=.+|.
T Consensus 209 ------------------------~d------~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l-~~~~p~ 255 (986)
T 2iw3_A 209 ------------------------KD------IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATL-SIMVPL 255 (986)
T ss_dssp ------------------------TT------TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHH-HHHHHH
T ss_pred ------------------------cc------hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhH-HHHHHH
Confidence 00 13378888888887754 5556666666332211111000 123677
Q ss_pred HHHhhcCCcHHHHHHHHHHHHHhhc---ChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhc
Q 003008 468 LVKLLDHSSDAVRLATTHALERLSV---SRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRIL 534 (858)
Q Consensus 468 Lv~LL~~~~~~v~~~a~~aL~~Ls~---~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~ 534 (858)
|.+-|......++++++..+.||++ ++.....+. -..+|.+-.... .-.++++|+.+..++..|-
T Consensus 256 l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~-~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 256 LSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFA-TIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTT-TCCSHHHHHHHHHHHHHHH
T ss_pred HHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhh-ccCCHHHHHHHHHHHHHHH
Confidence 7777888889999999999999998 333222222 345666666555 4556999998888877663
No 87
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.57 E-value=1.1 Score=54.94 Aligned_cols=195 Identities=10% Similarity=-0.049 Sum_probs=102.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-------
Q 003008 105 ALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN------- 177 (858)
Q Consensus 105 ~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~------- 177 (858)
..++..+. +++..+|.....++..++..+-.. . . .+.++.|+..+.+++...+..++.+|..+....
T Consensus 88 ~~ll~~l~-~~~~~ir~~l~~~ia~ia~~d~p~--~-W--p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMI-SLPNNLQVQIGEAISSIADSDFPD--R-W--PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHHHHHHHHHSTT--T-C--TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHHhhCcc--c-h--hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 34666654 445788888888888877532211 0 1 567889999998888888888999999887532
Q ss_pred hhHHHHH--hcCcHHHHHHH-------hcCCCCC-------HHHHHHHHHHHHHhccCcchHHHHHh--CCCHHHHHHHH
Q 003008 178 VYRDLVA--ECGAIEEITGL-------LTRPSLT-------SEVKEQSMCTLWNLSVDKKHRLKIAN--TDILPLLIKSL 239 (858)
Q Consensus 178 ~~~~~i~--~~g~i~~Lv~l-------L~~~~~~-------~~~~~~a~~~L~nLs~~~~~~~~i~~--~g~i~~Lv~ll 239 (858)
+.+..+. -....+.++++ ++....+ ..+...++++++++...+-... +.+ ...++.+..++
T Consensus 162 ~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~-~~~~~~~~~~~~~~~l 240 (960)
T 1wa5_C 162 ELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEF-FEDNIQVGMGIFHKYL 240 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHH-HHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHHHHH
Confidence 1222221 11224444443 4443112 1233446777777653321111 110 22234455555
Q ss_pred ccC------C---------HHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccC--CCCCHHHHHHHHHHHHHHh
Q 003008 240 EDE------N---------MKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKAN--VEGSKVIRKEARNALIELA 302 (858)
Q Consensus 240 ~~~------~---------~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~--~~~~~~~~~~a~~aL~nl~ 302 (858)
... + ..++..++.+|..+.........-.-...++..++++... ....+.+...+...+..++
T Consensus 241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~ 320 (960)
T 1wa5_C 241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT 320 (960)
T ss_dssp SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence 331 1 2466777888877764321111000112344555555421 1224456777888887777
Q ss_pred cChh
Q 003008 303 KDDY 306 (858)
Q Consensus 303 ~~~~ 306 (858)
..+.
T Consensus 321 ~~~~ 324 (960)
T 1wa5_C 321 RIPK 324 (960)
T ss_dssp TSHH
T ss_pred CcHh
Confidence 6544
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.60 E-value=0.46 Score=48.09 Aligned_cols=177 Identities=14% Similarity=0.052 Sum_probs=115.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc---ChhHHHHHH
Q 003008 426 RLVLILGLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV---SRGVCQIME 501 (858)
Q Consensus 426 ~Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~---~~~~~~~l~ 501 (858)
.+...+-+.|..-+.+++..|.. +..+++......+. ..+.+.--+.+.+..+...+...|..+.. ....+-.-.
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 45566677788888899999988 44444332221111 23333322336788888888877777642 111111001
Q ss_pred H-cCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhcc
Q 003008 502 A-EGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSE 579 (858)
Q Consensus 502 ~-~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~ 579 (858)
+ .-.+|.|+.-+.++. +.+|+.+..++..+.. - ..+...++.+..-+.+.+..++..++ .+..+...
T Consensus 129 ea~~~lP~LveKlGd~k--~~vR~~~r~il~~l~~---v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAK--DNMRTSVRDIVNVLSD---V------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHHHHHHGGGCSS--HHHHHHHHHHHHHHHH---H------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHH---H------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 1 125788888887544 8889988888766654 0 11122577788888999988888888 77777654
Q ss_pred ccchhhhHhhccch---hHHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 580 TTTSYGKVLDSVFI---GRMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 580 ~~~~~~~i~~~g~i---~~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
+-.. ...++ |.+..++.++|..|+..|+.++..+.
T Consensus 198 ~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 198 AGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4221 24578 99999999999999999999887654
No 89
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.99 Score=46.23 Aligned_cols=183 Identities=10% Similarity=-0.018 Sum_probs=116.1
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH-hcCChhh--HHHHH-H-cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hh--HH
Q 003008 427 LVLILGLEDERAIARAAESIAD-ISINEHM--RMLFK-E-AGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RG--VC 497 (858)
Q Consensus 427 Lv~lL~~~~~~v~~~a~~aL~~-l~~~~~~--~~~l~-~-~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~--~~ 497 (858)
|-.-|.+.++..|..|...|.. +...+.. ..... . ...++.+...+.+.+..++..++.++..+... .. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4577899999999999999988 4332211 11111 1 23355666788899999999999999888651 11 11
Q ss_pred HH--HHHcCChHHHHHh-hcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HH
Q 003008 498 QI--MEAEGVVHPLVNT-LKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VI 573 (858)
Q Consensus 498 ~~--l~~~g~i~~Li~l-L~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l 573 (858)
.. ..-...++.|+.- +. +....++..+..++..+.... .. ....++.+...+.+.+|.++..++ .|
T Consensus 94 ~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~---~~-----~~~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLD---TS-----ITQSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTS---SS-----SHHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhc---Cc-----HHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 11 1123356666653 54 334778888888776665411 00 011256677788889999999888 88
Q ss_pred HHhhccccchh---hhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 003008 574 EAAVSETTTSY---GKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITI 620 (858)
Q Consensus 574 ~~L~~~~~~~~---~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~ 620 (858)
..++...-... .... ...++.+..++.+.++.|+..|..++..+..
T Consensus 164 ~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 77765532210 0011 1345678888999999999999998877753
No 90
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.87 E-value=5.4 Score=48.04 Aligned_cols=294 Identities=14% Similarity=0.091 Sum_probs=174.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc----hhHHH
Q 003008 107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN----VYRDL 182 (858)
Q Consensus 107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~----~~~~~ 182 (858)
+++-+. ..+...+..++..+.++..++... ..+ ..+.+..|.+.+.+.... +.|+.++..|+... ..-..
T Consensus 19 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~ 92 (986)
T 2iw3_A 19 LFQKLS-VATADNRHEIASEVASFLNGNIIE--HDV-PEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPY 92 (986)
T ss_dssp HHHHHT-TCCTTTHHHHHHHHHHHHTSSCSS--SSC-CHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHH
T ss_pred HHhhcc-ccchhHHHHHHHHHHHHHhccccc--ccc-chhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccc
Confidence 444454 322334556666777665543221 122 246778888888766444 88999999998533 22222
Q ss_pred HHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--cCcchHHHHHhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcC
Q 003008 183 VAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS--VDKKHRLKIANTDILPLLIKSLEDE-NMKVKEAAGGVLANLAL 259 (858)
Q Consensus 183 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs--~~~~~~~~i~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~ 259 (858)
++ +.+|.+++.+.+. ...++..|..++..+. .++..- ...+|.|+..|.+. .-..+..|+.++..|+.
T Consensus 93 ~~--~~~~~~~~~~~dk--~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~ 163 (986)
T 2iw3_A 93 IV--QLVPAICTNAGNK--DKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVD 163 (986)
T ss_dssp HH--TTHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 32 5688999988876 7888888877777775 334332 23589999999776 56788999999999986
Q ss_pred CcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCcccccccccccccCCccCCCCCC
Q 003008 260 SKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEEGLVPVPMVGADAYKSFRPELHSWPS 339 (858)
Q Consensus 260 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~g~v~~~Lv~ll~~~~~~~~l~~~~~ 339 (858)
....+....-...||.+-+.+... -+.++..|..++..+|..=+|++. ...++. |++.+
T Consensus 164 ~~~~~~~~~~~~~~p~~~~~~~d~---k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~-~~~~~-------------- 222 (986)
T 2iw3_A 164 AAKDQVALRMPELIPVLSETMWDT---KKEVKAAATAAMTKATETVDNKDI---ERFIPS-LIQCI-------------- 222 (986)
T ss_dssp HSHHHHHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHGGGCCCTTT---GGGHHH-HHHHH--------------
T ss_pred HhHHHHHHhccchhcchHhhcccC---cHHHHHHHHHHHHHHHhcCCCcch---hhhHHH-HHHHh--------------
Confidence 542222222235677777777543 345888888888888863222110 112231 33321
Q ss_pred CCCcchhhcccCCchhhHHHHHHhccCCCCCCccchHHHHhhhhhhhhhhHHHHhhcccccCCCCCCCCCCccccccccc
Q 003008 340 LPDGTEIERTSQGPSKFGANELLLGLNVSDKNANIDEAKMNAMVGRSRQHFLVRIGAIESEDGRKPQSEFPIDRQLTLLP 419 (858)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~a~~aL~nL~~~~~~~~i~~~~~~~li~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 419 (858)
... ....+|...|... ..=..+++.++.
T Consensus 223 --------~~p--~~~~~~~~~l~~~---tfv~~v~~~~l~--------------------------------------- 250 (986)
T 2iw3_A 223 --------ADP--TEVPETVHLLGAT---TFVAEVTPATLS--------------------------------------- 250 (986)
T ss_dssp --------HCT--THHHHHHHHHTTC---CCCSCCCHHHHH---------------------------------------
T ss_pred --------cCh--hhhHHHHHHhhcC---eeEeeecchhHH---------------------------------------
Confidence 110 1122232222221 100001111110
Q ss_pred ccccHHHHHHHhCCCCHHHHHHHHHHHHHhcC--ChhhHHHHHHcCcHHHHHHhhc-CCcHHHHHHHHHHHHHh
Q 003008 420 WIDGVARLVLILGLEDERAIARAAESIADISI--NEHMRMLFKEAGAIKYLVKLLD-HSSDAVRLATTHALERL 490 (858)
Q Consensus 420 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~~~~~~l~~~g~i~~Lv~LL~-~~~~~v~~~a~~aL~~L 490 (858)
=.+|-|..-|+.....++++++-++-|+++ ++..-..-+-...+|.|.+... ..+|++|..|..|+..|
T Consensus 251 --~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 251 --IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp --HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 034455566777889999999999999775 3333233334667777777664 45799999998888887
No 91
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.45 E-value=2.2 Score=42.27 Aligned_cols=194 Identities=18% Similarity=0.134 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccC---------C---HHHHHHHHHHHHHhhcCchhHHHHHhc
Q 003008 119 DREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSE---------S---SAACEAAAGLLRSISSINVYRDLVAEC 186 (858)
Q Consensus 119 ~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~---------~---~~~~~~a~~aL~nLs~~~~~~~~i~~~ 186 (858)
.|++|+..|..--..-++-.-.+....|.+..|++=.-+- + ..-..+|...|..++.+++.|..+.++
T Consensus 17 ~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a 96 (268)
T 2fv2_A 17 TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAA 96 (268)
T ss_dssp THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHT
T ss_pred hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHc
Confidence 5888877776533322221123445678777776654221 1 122345777778889999999999999
Q ss_pred CcHHHHHHHhcCCCCC---HHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCc
Q 003008 187 GAIEEITGLLTRPSLT---SEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLALSK 261 (858)
Q Consensus 187 g~i~~Lv~lL~~~~~~---~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~ 261 (858)
+..--|..+|+..+.+ ...+-.++++++.|...++ .-..+.+...+|..++.+..|++-.+.-|..++..+-.++
T Consensus 97 ~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 97 HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 8877777777776322 3467778899999885443 3455558889999999999999999999999999987665
Q ss_pred CchHHHHh--------CCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChhhHHHHHHc
Q 003008 262 SNHNILVE--------AGVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDYYRILIIEE 314 (858)
Q Consensus 262 ~~~~~i~~--------~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~~~~~i~~~ 314 (858)
.+-..+.. ..++..+|.-+... .++.+.++..++-..|+.++..|..+...
T Consensus 177 ~GL~YiC~t~eRF~av~~vL~~mV~~l~~~--ps~RLLKhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 177 TGLAYICQTYERFSHVAMILGKMVLQLSKE--PSARLLKHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred hhHHHHHccHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 44332221 12445555544322 36678899999999999999999888763
No 92
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.53 E-value=2 Score=43.93 Aligned_cols=185 Identities=17% Similarity=0.088 Sum_probs=116.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccCCccc--HHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc---h-h
Q 003008 107 FVQMLGLDYDPLDREQAVEALWKYSLGGKKC--IDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRSISSIN---V-Y 179 (858)
Q Consensus 107 lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~--~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~---~-~ 179 (858)
|-+-|. +.++..|..++..|..+....... .+..+.. ....+.+-..+.+.+..+...++.+|..++..- . .
T Consensus 14 l~e~l~-sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLT-YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcc-cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 557786 899999999999998765433211 0111111 234556667888889999999999998886531 1 1
Q ss_pred HH--HHHhcCcHHHHHH-HhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 180 RD--LVAECGAIEEITG-LLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 180 ~~--~i~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
+. ...-...+|.|++ .+.+. .+.++..+..++..+......... .++.++..+.+.++.++..++..|..
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 11 1222446788876 47776 888888888888776533222111 24566667788899999999999988
Q ss_pred HcCC--cC--chHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 257 LALS--KS--NHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 257 L~~~--~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
+... .. +-...+ ..+++.+..++.+. .+.+|..|..++..+-.
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~---~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHG---DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCS---SHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCC---cHHHHHHHHHHHHHHHH
Confidence 7532 11 111111 12345566677553 46699999998888765
No 93
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=92.27 E-value=0.25 Score=49.52 Aligned_cols=24 Identities=4% Similarity=-0.057 Sum_probs=17.9
Q ss_pred chhHHHHhhcCCCHHHHHHHHHHH
Q 003008 592 FIGRMIGIMKTSYPDLQRKAASIL 615 (858)
Q Consensus 592 ~i~~L~~lL~s~~~~v~~~a~~~L 615 (858)
..+.|..++.+++..|+..++..+
T Consensus 195 ~~~~L~~Ll~D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 195 RGDDLLELLHDPDWTVRLAAVEHA 218 (244)
T ss_dssp CGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred CHHHHHHHHcCCCHHHHHHHHHcC
Confidence 456777788888888888777764
No 94
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.32 E-value=0.16 Score=50.93 Aligned_cols=59 Identities=8% Similarity=0.067 Sum_probs=31.6
Q ss_pred HHHhhcCCChhHHHHHH-HH-----HHhhccc--cchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHH
Q 003008 555 GLDAAESLDPSIELTGN-VI-----EAAVSET--TTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASIL 615 (858)
Q Consensus 555 Li~ll~s~d~~v~~~a~-~l-----~~L~~~~--~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L 615 (858)
+..++++++++|+..+. .+ ..+..+. ..| ..+...-+.+.|..| .+++..|+..+...|
T Consensus 175 l~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR-~~aa~~l~~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 175 LGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVR-LAAVEHASLEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp GGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHH-HHHHHHSCHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred HHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHH-HHHHHcCCHHHHHHc-cCCCHHHHHHHHHHh
Confidence 33455556666665554 21 1122222 223 333333345677766 889999998876544
No 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=89.81 E-value=11 Score=38.98 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHhhcCchhHHHHHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--ch-HHHHHhCCCHH
Q 003008 159 SSAACEAAAGLLRSISSINVYRDLVAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KH-RLKIANTDILP 233 (858)
Q Consensus 159 ~~~~~~~a~~aL~nLs~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~-~~~i~~~g~i~ 233 (858)
.+..+.-++++++|+-.+...|..+.. ..+++.+...+.+. +..++..++.++.|++..- .. .... .-.+.
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~--nknl~iA~ATl~~NlAv~~~~~~~~~~~--~~ll~ 236 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS--NKNIHIALATLALNYSVCFHKDHNIEGK--AQCLS 236 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC--CHHHHHHHHHHHHHHHHHHHHSCCHHHH--HHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHhhcCCchHH--HHHHH
Confidence 566688899999999988888887765 23455555555555 8899999999999998531 11 1111 11344
Q ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHH
Q 003008 234 LLIKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEA 294 (858)
Q Consensus 234 ~Lv~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a 294 (858)
.+.+++.. .+.+....++.+|.+|.+.+.....+.+.=.+...+.-..+.+. ..++.+.+
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~-~~kv~~~~ 297 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE-PAKVSECC 297 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCS-SHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCC-chhHHHHH
Confidence 55555544 38889999999999999875544455544344444443333322 34444433
No 96
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.30 E-value=0.71 Score=50.86 Aligned_cols=157 Identities=18% Similarity=0.146 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCC
Q 003008 438 AIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLD 517 (858)
Q Consensus 438 v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~ 517 (858)
||+.|+.+|+.+ ..-+.. ...+..|+..+..+..++|..+...|.-+. +.... -.++++.++..|.+++
T Consensus 244 VRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~D 312 (800)
T 3oc3_A 244 VRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSPD 312 (800)
T ss_dssp HHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCcc
Confidence 888999999887 322211 456666666668888999999999988882 11111 1345777777887554
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcC-CChhHHHHHH--HHHHhhccccchhhhHhhccchh
Q 003008 518 ISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAES-LDPSIELTGN--VIEAAVSETTTSYGKVLDSVFIG 594 (858)
Q Consensus 518 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s-~d~~v~~~a~--~l~~L~~~~~~~~~~i~~~g~i~ 594 (858)
++++..|+.+|.-++.+ +.- ...+..+++.|.+ +|-....... .|..|....... -.+...+|
T Consensus 313 --DDVRAVAAetLiPIA~p--~~l-------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVP 378 (800)
T 3oc3_A 313 --EDIKLLSAELLCHFPIT--DSL-------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLK 378 (800)
T ss_dssp --HHHHHHHHHHHTTSCCS--STH-------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGG
T ss_pred --cHHHHHHHHHhhhhcch--hhH-------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHH
Confidence 89999999999888731 110 1234556666655 3433333333 555555443321 12237899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhh
Q 003008 595 RMIGIMKTSYPDLQRKAASILEFIT 619 (858)
Q Consensus 595 ~L~~lL~s~~~~v~~~a~~~L~~l~ 619 (858)
.|..++++.-+.|+..++.+|..+.
T Consensus 379 RL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 379 DIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999988776
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=88.28 E-value=44 Score=41.01 Aligned_cols=187 Identities=14% Similarity=0.068 Sum_probs=110.1
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCC-----cccHHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHH
Q 003008 102 SYVALFVQMLGLDYDPLDREQAVEALWKYSLGG-----KKCIDYIMQFSGCINLTVNLLRSE-----SSAACEAAAGLLR 171 (858)
Q Consensus 102 g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~-----~~~~~~ii~~~g~i~~Li~lL~~~-----~~~~~~~a~~aL~ 171 (858)
++...+..+|..+.++.+|..|+..|.+..... ...+ ..+ +...+..+...-..+ +..++...+.++.
T Consensus 48 ~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~-~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia 125 (1049)
T 3m1i_C 48 DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR-IGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLV 125 (1049)
T ss_dssp TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH-HHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH-HHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHH
Confidence 455556777754678899999999998875422 2221 233 233344443332211 3567777888888
Q ss_pred HhhcCc-hhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC-----cc----hH-----HHHHhCCCHHHH-
Q 003008 172 SISSIN-VYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD-----KK----HR-----LKIANTDILPLL- 235 (858)
Q Consensus 172 nLs~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~-----~~----~~-----~~i~~~g~i~~L- 235 (858)
.|+..+ +. ...+.++.|+.+++ . ++..++.++.+|..|+.. .+ .| ..+.. -++.+
T Consensus 126 ~Ia~~~~p~----~Wp~ll~~L~~~~~-~--~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~--~~~~i~ 196 (1049)
T 3m1i_C 126 QILKQEWPQ----NWPEFIPELIGSSS-S--SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK--EFEQIF 196 (1049)
T ss_dssp HHHHHHTTT----TCTTHHHHHHHHHT-T--CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHhCcc----cchHHHHHHHHHHc-c--ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH--HHHHHH
Confidence 887642 11 01456889999886 4 666777778888777621 11 11 22222 14444
Q ss_pred ---HHHHcc-CCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcC
Q 003008 236 ---IKSLED-ENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAKD 304 (858)
Q Consensus 236 ---v~ll~~-~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~ 304 (858)
..++.. .+..++..++.++.+...--. -..+.+...++.+.+.+-. .+.++..|+.+|..+...
T Consensus 197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~-~~~~~~~~ll~~l~~~~l~----~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 197 KLCFQVLEQGSSSSLIVATLESLLRYLHWIP-YRYIYETNILELLSTKFMT----SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHHHHTHHHH----SHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-HHHHhhhhHHHHHHHHhCC----CHhHHHHHHHHHHHHHhC
Confidence 333443 367889999999987654222 1224555666666632222 344788899999888864
No 98
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=87.55 E-value=0.9 Score=45.93 Aligned_cols=96 Identities=10% Similarity=0.030 Sum_probs=69.6
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHhhhcCcchhhHHHHhcCCchHHHHHhhcCChHHHHHHHHHHHhhhcCccchHHH
Q 003008 747 AIPRLIEQIKSFSSEAREAAVIELNRIISEGVVDSTRAVASEGGIFPLVKLIEEGSNRAVEAGLAILYNLSMDSENHSAI 826 (858)
Q Consensus 747 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~i 826 (858)
.+|.|+.-+.++...+|..+-..+..+..-.++ .. ..+.+++-+.++|.++|..++..+..+-......
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~-----v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LK-----MTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--- 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HH-----HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HH-----HHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---
Confidence 478888888888899999888887666543332 11 2255677778889999999999888875432221
Q ss_pred HHcCch---HHHHHhhhcCChhH-HHHHHHHh
Q 003008 827 IAAGAV---PALRRIVLSQRPQW-TRALRLLR 854 (858)
Q Consensus 827 ~~~g~v---~~L~~ll~~~~~~~-~~al~~l~ 854 (858)
...++ +.+.+++.+.|+.+ +.|+.++.
T Consensus 202 -~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lv 232 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDKDVNVRNAAINVLV 232 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCCCHHHHHHHHHHHH
Confidence 24568 89999999999988 77777654
No 99
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=87.48 E-value=59 Score=39.50 Aligned_cols=194 Identities=11% Similarity=0.073 Sum_probs=99.7
Q ss_pred cccccHHHHHHHhCCCCH-HHHHHHHHHHH---H-hcC-----Chh--h-----HHHHHHc-------CcHHHHHHhhcC
Q 003008 419 PWIDGVARLVLILGLEDE-RAIARAAESIA---D-ISI-----NEH--M-----RMLFKEA-------GAIKYLVKLLDH 474 (858)
Q Consensus 419 ~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~---~-l~~-----~~~--~-----~~~l~~~-------g~i~~Lv~LL~~ 474 (858)
.|.+.++.++.++++++. .......++|. . +.. +.+ . ++.+.+. +....|.....+
T Consensus 125 ~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~ 204 (980)
T 3ibv_A 125 NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNA 204 (980)
T ss_dssp TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhcc
Confidence 566778888888765433 33444445555 3 221 111 1 2233322 223333343344
Q ss_pred CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHH
Q 003008 475 SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEK 554 (858)
Q Consensus 475 ~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~ 554 (858)
.++.++..+..+|.....--. -..+.....++.+..++. + +.++..|+.||..+...+.+...+..+...=.+..
T Consensus 205 ~~~~l~~~~L~~l~s~i~wi~-~~~i~~~~ll~~l~~~L~--~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~ 279 (980)
T 3ibv_A 205 KNYGTVGLCLQVYAQWVSWIN-INLIVNEPCMNLLYSFLQ--I--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNL 279 (980)
T ss_dssp TCHHHHHHHHHHHHHHTTTSC-HHHHHCHHHHHHHHHHTT--S--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcC-HHhhhcchHHHHHHHHcC--C--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHH
Confidence 678888888888887776222 345555677888888886 3 68999999999998763333222222211111122
Q ss_pred HHHhhc--CCChhHHHHHH-HHHHhh-----ccccc-------hhhhHhh--ccchhHHHHhhcCCCHHHHHHHHHHHHH
Q 003008 555 GLDAAE--SLDPSIELTGN-VIEAAV-----SETTT-------SYGKVLD--SVFIGRMIGIMKTSYPDLQRKAASILEF 617 (858)
Q Consensus 555 Li~ll~--s~d~~v~~~a~-~l~~L~-----~~~~~-------~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~~ 617 (858)
.+..+. ..|.+....-+ .+..+. ..... + ..... .+.++.++.++.+++.++-..+...+..
T Consensus 280 ~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~-~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~ 358 (980)
T 3ibv_A 280 FFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELK-ENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD 358 (980)
T ss_dssp HHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHH-HHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhh-hhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 222222 35666644333 222111 11110 0 01111 2567888888888888776655555444
Q ss_pred h
Q 003008 618 I 618 (858)
Q Consensus 618 l 618 (858)
+
T Consensus 359 ~ 359 (980)
T 3ibv_A 359 L 359 (980)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=87.39 E-value=6.7 Score=43.44 Aligned_cols=141 Identities=12% Similarity=0.077 Sum_probs=88.6
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Chh--HHHHHHHcCChHHHHHhh-c----C---CCccHHHHHHHHHHHHH
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSV-SRG--VCQIMEAEGVVHPLVNTL-K----N---LDISESLMEKTLDILGR 532 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~~--~~~~l~~~g~i~~Li~lL-~----~---~~~~~~~~~~a~~~L~~ 532 (858)
..+.|+.=|-++..++|..|+.+|+.+.+ ... .|..-......-.|+-++ - + ...-..|||.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 46677777778899999999999999865 211 011000001122222222 1 1 11224689999999998
Q ss_pred hcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHH
Q 003008 533 ILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKA 611 (858)
Q Consensus 533 l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a 611 (858)
+ . ..... ...+..++..+..+.=+++..++ .|.++ .+.- . . =.+.++.++.-|.+.+.+|+..|
T Consensus 255 L-~---hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~DLL-~--~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 255 I-Y---PLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-KEFV-E--D--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp H-T---TTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-GGGC-C--C--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred H-H---hCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-HHHH-H--H--HHHHHHHHHhhcCCcccHHHHHH
Confidence 8 5 22221 23355555555666668888888 88888 2111 1 1 13557888888999999999999
Q ss_pred HHHHHHhh
Q 003008 612 ASILEFIT 619 (858)
Q Consensus 612 ~~~L~~l~ 619 (858)
+.+|.-++
T Consensus 320 AetLiPIA 327 (800)
T 3oc3_A 320 AELLCHFP 327 (800)
T ss_dssp HHHHTTSC
T ss_pred HHHhhhhc
Confidence 99999888
No 101
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=87.08 E-value=5.4 Score=39.48 Aligned_cols=144 Identities=13% Similarity=0.062 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCc-----HHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHHH
Q 003008 439 IARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSS-----DAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLVN 511 (858)
Q Consensus 439 ~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~-----~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li~ 511 (858)
+.+|...|..++.+++.|..+.++...-.|..+|+..+ +.+|-.+.+.++.|.+ +++....+.+.+.+|..+.
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 34555555667889999999999999888888887543 5788999999999987 6788889999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHhcCCCccccccccccc--------CcCcHHHH-HhhcCCChhHHHHHH-HHHHhhcccc
Q 003008 512 TLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIP--------VNGSEKGL-DAAESLDPSIELTGN-VIEAAVSETT 581 (858)
Q Consensus 512 lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~--------~~~i~~Li-~ll~s~d~~v~~~a~-~l~~L~~~~~ 581 (858)
.+..++ +.-|..|+-++..+.. +...-.++.. ...+...+ .+.+.+++.+.+..+ |...|+.+..
T Consensus 153 ime~Gs--elSKtvAtfIlqKIL~---dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 153 IMESGS--ELSKTVATFILQKILL---DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHHHSC--HHHHHHHHHHHHHHHH---SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHhhcc--HHHHHHHHHHHHHHhc---cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH
Confidence 998666 6667777777766554 1111111100 01111122 233456666777777 7777776666
Q ss_pred chhhhHh
Q 003008 582 TSYGKVL 588 (858)
Q Consensus 582 ~~~~~i~ 588 (858)
.+ +.+.
T Consensus 228 ar-~aL~ 233 (268)
T 2fv2_A 228 AR-EALR 233 (268)
T ss_dssp HH-HHHH
T ss_pred HH-HHHH
Confidence 66 5554
No 102
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=86.42 E-value=19 Score=37.30 Aligned_cols=207 Identities=12% Similarity=0.086 Sum_probs=125.3
Q ss_pred HHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccc--cccccccCcCcHHHHHhhc-CCChhHHHHHH-HH
Q 003008 498 QIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMK--SKFYDIPVNGSEKGLDAAE-SLDPSIELTGN-VI 573 (858)
Q Consensus 498 ~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~i~~~~~i~~Li~ll~-s~d~~v~~~a~-~l 573 (858)
..+.+.+.+..|+..|..-+ .+.++-+..+..++........ ...++.. --+.+.-++. .+++++...+- .|
T Consensus 72 ~ei~~~dll~~Li~~l~~L~--fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mL 147 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLID--FEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIML 147 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSC--HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCC--chhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHH
Confidence 44556788999998887444 8899999999999887322111 1111111 1112222222 13455555555 66
Q ss_pred HHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcCCcchHHHHhhchHHHHHHHHHhhhccCCCCCc
Q 003008 574 EAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITIIDPSMDTIISADIESGLDAIFQQKALEDTDSDI 653 (858)
Q Consensus 574 ~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~gl~~l~~~~iL~~~~~~~ 653 (858)
+.++.++... ..+...+.+-.+.+....++=+|..-|..++..+.... ....
T Consensus 148 Recir~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H--k~lv------------------------- 199 (341)
T 1upk_A 148 RECIRHEPLA-KIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH--KLLS------------------------- 199 (341)
T ss_dssp HHHHTSHHHH-HHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS--HHHH-------------------------
T ss_pred HHHHHhHHHH-HHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--HHHH-------------------------
Confidence 6666555554 55666666666666666666666555555554442210 0000
Q ss_pred CCCCCCccchhhhhHHHHHHHhhhhHHHHhhhhhhhcccchHHHHHHHHHHhhccCCCchhhHHHHHHHhhcccCCCCCC
Q 003008 654 EGRQPEKYALDIEEASLAISAGARLLTKLLDSKQFCQTINSTHFIKLLRKILKSNVPLHYKDWVAACLVKLSCLSGPDQD 733 (858)
Q Consensus 654 ~~~~~~~~~l~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 733 (858)
.. ++.
T Consensus 200 -----------------------------ae-------------------fL~--------------------------- 204 (341)
T 1upk_A 200 -----------------------------AE-------------------FLE--------------------------- 204 (341)
T ss_dssp -----------------------------HH-------------------HHH---------------------------
T ss_pred -----------------------------HH-------------------HHH---------------------------
Confidence 00 000
Q ss_pred CCccchhhhhhhcchHHHHHHhccCCHHHHHHHHHHHHHhhhcCcch--hhHHHHhcCCchHHHHHhhcCChHHHHHHHH
Q 003008 734 FENPINMEVTLYEAIPRLIEQIKSFSSEAREAAVIELNRIISEGVVD--STRAVASEGGIFPLVKLIEEGSNRAVEAGLA 811 (858)
Q Consensus 734 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~--~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~ 811 (858)
.. -......+-+||.++|.-+|.++..-|+.|..+...- ..+++.+..-+..++.+|++++..+|.+|-.
T Consensus 205 --~n------yd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFh 276 (341)
T 1upk_A 205 --QH------YDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFH 276 (341)
T ss_dssp --HT------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred --Hh------HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhh
Confidence 00 0013455667889999999999999999998775431 2236667777888999999999999999988
Q ss_pred HHHhhhcC
Q 003008 812 ILYNLSMD 819 (858)
Q Consensus 812 aL~nL~~~ 819 (858)
+.--...+
T Consensus 277 VFKvFVAN 284 (341)
T 1upk_A 277 VFKVFVAN 284 (341)
T ss_dssp HHHHHHHC
T ss_pred heeeeeeC
Confidence 87655444
No 103
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=82.37 E-value=32 Score=33.75 Aligned_cols=135 Identities=10% Similarity=0.119 Sum_probs=88.7
Q ss_pred cCcHHHHHHHHccC-----------CHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHH
Q 003008 145 SGCINLTVNLLRSE-----------SSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCT 212 (858)
Q Consensus 145 ~g~i~~Li~lL~~~-----------~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~ 212 (858)
.+|+..|+..|..- +......++.+|+.|..+......+.. .+++..++..|.++ ++.++..++..
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~leL 119 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKL 119 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHH
Confidence 57888888887431 334566788899988887776666666 77899999999887 99999999999
Q ss_pred HHHhccCcc--h-HHHH----------HhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCc---h----HHHHhCC
Q 003008 213 LWNLSVDKK--H-RLKI----------ANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSN---H----NILVEAG 271 (858)
Q Consensus 213 L~nLs~~~~--~-~~~i----------~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~---~----~~i~~~g 271 (858)
|.-+|..++ + ...+ .+..-...+++.++.. +.+.+..++..+-.+...++. | ..+...|
T Consensus 120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 988886543 3 2222 1333556678777743 556666665555555554432 2 2334444
Q ss_pred CHHHHHHHHcc
Q 003008 272 VIPKLAMLLKA 282 (858)
Q Consensus 272 ~i~~Lv~ll~~ 282 (858)
+..+++-++.
T Consensus 200 -l~~il~~l~~ 209 (233)
T 2f31_A 200 -LHQVLQELRE 209 (233)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHhc
Confidence 5555555554
No 104
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=79.88 E-value=54 Score=34.88 Aligned_cols=140 Identities=10% Similarity=0.101 Sum_probs=93.5
Q ss_pred HHHHHhcCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHH
Q 003008 139 DYIMQFSGCINLTVNLLRS-----------ESSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVK 206 (858)
Q Consensus 139 ~~ii~~~g~i~~Li~lL~~-----------~~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~ 206 (858)
+.++ .+|+..|+.+|.. .+......++.+|+.|..+......+.. ..+|..|+..+.+. ++.++
T Consensus 104 ~~F~--~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~ 179 (383)
T 3eg5_B 104 QTFG--AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMM 179 (383)
T ss_dssp HHHH--HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT--SHHHH
T ss_pred HHHH--HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC--chHHH
Confidence 3454 5788888888842 1345666788999998887776666666 77899999999987 99999
Q ss_pred HHHHHHHHHhccCcc--h-HHHH----------HhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCc---h----H
Q 003008 207 EQSMCTLWNLSVDKK--H-RLKI----------ANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSN---H----N 265 (858)
Q Consensus 207 ~~a~~~L~nLs~~~~--~-~~~i----------~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~---~----~ 265 (858)
..++.+|.-+|..++ + ...+ .+..-...++..|+.+ +.+.+..++..+-.+....+. | .
T Consensus 180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ 259 (383)
T 3eg5_B 180 IDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRS 259 (383)
T ss_dssp HHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999986543 2 2222 2344567788888874 666666666555555554332 2 2
Q ss_pred HHHhCCCHHHHHHHHccC
Q 003008 266 ILVEAGVIPKLAMLLKAN 283 (858)
Q Consensus 266 ~i~~~g~i~~Lv~ll~~~ 283 (858)
.+...| +..++.-|+..
T Consensus 260 ef~~~G-l~~il~~lr~~ 276 (383)
T 3eg5_B 260 ELMRLG-LHQVLQELREI 276 (383)
T ss_dssp HHHHTT-HHHHHHHHTTS
T ss_pred HHHHCC-hHHHHHHHhcC
Confidence 334445 44555556653
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.65 E-value=11 Score=40.87 Aligned_cols=120 Identities=16% Similarity=0.049 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHH
Q 003008 116 DPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGL 195 (858)
Q Consensus 116 d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~l 195 (858)
+...+.-|+..+...-.+=++. ...++..++.++.+++..+|.+|.+.|-.+|.+ ++-.. ++..|+++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL------ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHHHH
Confidence 4556666666665544332222 244678889999999999999999999999987 44333 36788999
Q ss_pred hcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 003008 196 LTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLEDENMKVKEAAGGVLAN 256 (858)
Q Consensus 196 L~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~n 256 (858)
|++. ++.-....-.+|..|-..+. .|.+..|+..+..+++.+|+.++.-|..
T Consensus 109 Lqtd--d~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 109 LQTD--DSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp TTCC--CHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred Hhcc--chHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 9987 77666666666655532221 3445666666666788888888777754
No 106
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=79.34 E-value=8.5 Score=39.70 Aligned_cols=116 Identities=15% Similarity=0.113 Sum_probs=73.8
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc-h--hHHHHH
Q 003008 109 QMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQF-SGCINLTVNLLRSESSAACEAAAGLLRSISSIN-V--YRDLVA 184 (858)
Q Consensus 109 ~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~-~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~-~--~~~~i~ 184 (858)
..+..+..+..+.-++++++|+-...... +.++.. ...++.+...+.+.+..++..++..+.|++... . ..+..
T Consensus 154 ~~~~~~~~p~n~ml~lR~l~NlF~~~~g~-~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~- 231 (304)
T 3ebb_A 154 NLLNPKGKPANQLLALRTFCNCFVGQAGQ-KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGK- 231 (304)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHGGGSHHHH-HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHH-
T ss_pred HhcCCCCChHHHHHHHHHHHHccCCchhH-HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHH-
Confidence 44432345677889999999999877653 344421 123444444445668899999999999997631 1 11111
Q ss_pred hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 003008 185 ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIAN 228 (858)
Q Consensus 185 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~ 228 (858)
...+..+..+++.. .+++....++.+|++|...+.....+++
T Consensus 232 -~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 232 -AQCLSLISTILEVV-QDLEATFRLLVALGTLISDDSNAVQLAK 273 (304)
T ss_dssp -HHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCChhHHHHHH
Confidence 11455556666654 3889999999999999866554444443
No 107
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=79.00 E-value=15 Score=36.06 Aligned_cols=139 Identities=9% Similarity=-0.020 Sum_probs=90.6
Q ss_pred cHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHhcC-CCccccc
Q 003008 464 AIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRILD-PSKEMKS 542 (858)
Q Consensus 464 ~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~ 542 (858)
.++..-.|.+++..++|..|+.+|+.+ ... ...++.+...+. .+..-.|++.+..++..++. .+.
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va-~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVS-KDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGG-GCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhC-CCCCccHHHHHHHHHHHHHHhcCH----
Confidence 344555667788899999999998887 311 123555555233 23346899999888888873 111
Q ss_pred ccccccCcCcHHHHHhhcCCChhHHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcCCCHHHHHHHHHHHHHhhcC
Q 003008 543 KFYDIPVNGSEKGLDAAESLDPSIELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKTSYPDLQRKAASILEFITII 621 (858)
Q Consensus 543 ~~~i~~~~~i~~Li~ll~s~d~~v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~~l~~~ 621 (858)
...++.+.....++|+.+++.++ .+.--.... . ......-.+|.|-.+..+++.-||....+.|..++..
T Consensus 138 ------e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~--~-~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 138 ------KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRP--Y-FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp ------TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGST--T-TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccc--h-hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 12467788889999999999988 432211100 0 1111122456666677788889999999999999987
Q ss_pred Ccch
Q 003008 622 DPSM 625 (858)
Q Consensus 622 ~~~~ 625 (858)
++..
T Consensus 209 ~Pd~ 212 (240)
T 3l9t_A 209 FPDL 212 (240)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6653
No 108
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.35 E-value=11 Score=46.09 Aligned_cols=140 Identities=6% Similarity=-0.034 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHHHHcccCCcccHH-HHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCchhHHHHHhcCc
Q 003008 115 YDPLDREQAVEALWKYSLGGKKCID-YIMQFSGCINLTVNLLRS-----ESSAACEAAAGLLRSISSINVYRDLVAECGA 188 (858)
Q Consensus 115 ~d~~~~~~a~~~L~~la~~~~~~~~-~ii~~~g~i~~Li~lL~~-----~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~ 188 (858)
.++..++.++++++.++........ ..+ ..+++.|+.++.. ....++..++++|+..+.--....... ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l--~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~v 541 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV--VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTV 541 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH--HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHH
Confidence 5799999999999999876543211 233 5677888888763 223345567788887654211111111 124
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHh------CCCHHHHHHH----HccCCHHHHHHHHHHHHHHc
Q 003008 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIAN------TDILPLLIKS----LEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~------~g~i~~Lv~l----l~~~~~~~~~~a~~~L~nL~ 258 (858)
+..|++.+... ++.++..|++++.+||.. ++..+.. ...++.++.. +..-++..+.....++..+.
T Consensus 542 l~~L~~~l~~~--~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 542 ILKLFEFMHET--HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcC--CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 56667777665 789999999999999963 3344432 1234444443 33346667778888888876
Q ss_pred CCc
Q 003008 259 LSK 261 (858)
Q Consensus 259 ~~~ 261 (858)
..-
T Consensus 618 ~~~ 620 (1023)
T 4hat_C 618 SEE 620 (1023)
T ss_dssp TTC
T ss_pred HhC
Confidence 653
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=75.31 E-value=9.9 Score=41.31 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=83.1
Q ss_pred CCCCHHHHHHHHHHHHH-hcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHH
Q 003008 432 GLEDERAIARAAESIAD-ISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~-l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li 510 (858)
..++...+.-|+..+.. ...-++.. ..++..++.|+.+++..||.+|...|..+|.+ ++... .+..|.
T Consensus 38 ~kg~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 38 VKGGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPR-----VADILT 106 (507)
T ss_dssp GGSCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHH-----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhh-----HHHHHH
Confidence 34578899999999999 55667654 45888999999999999999999999999987 43222 356788
Q ss_pred HhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCChhHHHHHH
Q 003008 511 NTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDPSIELTGN 571 (858)
Q Consensus 511 ~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~~v~~~a~ 571 (858)
++|+. + +..-...+..+|..+.. +.+.+.+..+.+.+..+++.++..++
T Consensus 107 QlLqt-d-d~~E~~~V~~sL~sllk----------~Dpk~tl~~lf~~i~~~~e~~Rer~l 155 (507)
T 3u0r_A 107 QLLQT-D-DSAEFNLVNNALLSIFK----------MDAKGTLGGLFSQILQGEDIVRERAI 155 (507)
T ss_dssp HHTTC-C-CHHHHHHHHHHHHHHHH----------HCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHhc-c-chHHHHHHHHHHHHHHh----------cChHHHHHHHHHHHcccchHHHHHHH
Confidence 88883 3 34445556666666654 12233455566666666777777666
No 110
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=75.29 E-value=25 Score=42.67 Aligned_cols=133 Identities=11% Similarity=0.048 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH---ccCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCcH
Q 003008 114 DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL---RSESSAACEAAAGLLRSISSIN-VYRDLVAECGAI 189 (858)
Q Consensus 114 s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL---~~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~i 189 (858)
+.++..++.++.+++.++.+-... +...++.++..+ .++++.++..+++++..++..- ++. ... ..++
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~------~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVN------YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSS------CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCchHHHHHHHHHHHHHHhhcCch------hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 568888999999999988754321 123344444444 3357889999999999887532 222 222 3578
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCC
Q 003008 190 EEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLEDE--NMKVKEAAGGVLANLALS 260 (858)
Q Consensus 190 ~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~ 260 (858)
+.++..|. ++.++..|+.+|.+++.. .+..+. -...+..|..++.++ +...+.....++..+...
T Consensus 532 ~~l~~~l~----~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 532 PLVLHALG----NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHHTT----CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhC----CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 88888884 467899999999999842 222222 122333444555543 568888999999988754
No 111
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=74.63 E-value=33 Score=33.68 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=92.9
Q ss_pred cCCCcHHHHHHHhcCC----------CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHH
Q 003008 99 FGDSYVALFVQMLGLD----------YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAG 168 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s----------~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~ 168 (858)
|+.+++..|++.|... .|.+.+..++++|..+.....+ .+.++...+++..|...|.+.++.++..++.
T Consensus 40 F~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G-~~~vl~~~~~i~~l~~~L~s~~~~~r~~~le 118 (233)
T 2f31_A 40 FGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHH-HHHHHTSSSHHHHHHTTCCTTSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHH-HHHHHcCcHHHHHHHHHhCCCCchHHHHHHH
Confidence 5667888888766421 1446677888999888766555 4577777789999999999999999999998
Q ss_pred HHHHhhcCch--h-HHHHH----------hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc---chHHHHH----h
Q 003008 169 LLRSISSINV--Y-RDLVA----------ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK---KHRLKIA----N 228 (858)
Q Consensus 169 aL~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~---~~~~~i~----~ 228 (858)
.|..++..++ + ...+. +..-...+++.++... +.+.+..++..+-.+...+ +.|..++ .
T Consensus 119 LL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~-~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 197 (233)
T 2f31_A 119 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMR 197 (233)
T ss_dssp HHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC-hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 8888876442 3 33332 2234556777777542 5566655544444443332 2344444 5
Q ss_pred CCCHHHHHHHHcc-CCHHHHHH
Q 003008 229 TDILPLLIKSLED-ENMKVKEA 249 (858)
Q Consensus 229 ~g~i~~Lv~ll~~-~~~~~~~~ 249 (858)
.| +..+++-++. .++++..+
T Consensus 198 ~G-l~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 198 LG-LHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp TT-HHHHHHHHHHCCCHHHHHH
T ss_pred CC-hHHHHHHHhccCCHHHHHH
Confidence 55 4444455544 45555443
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=73.89 E-value=57 Score=31.88 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=92.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhcc--CcchHHH
Q 003008 148 INLTVNLLRSESSAACEAAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSV--DKKHRLK 225 (858)
Q Consensus 148 i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~--~~~~~~~ 225 (858)
++..-.+.+++.+++|..|+.+|..+ ... ...++.+...+...+ +=.+++.++.++..++. +++
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH----
Confidence 45556677888899999999988877 211 113555555333321 56899999999998874 332
Q ss_pred HHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCcCchHHHHhCCCHHHHHHHHcc-CCCCCHHHHHHHHHHHHHHhc-
Q 003008 226 IANTDILPLLIKSLEDENMKVKEAAGGVLANLALSKSNHNILVEAGVIPKLAMLLKA-NVEGSKVIRKEARNALIELAK- 303 (858)
Q Consensus 226 i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~~a~~aL~nl~~- 303 (858)
..++.+....++++..+|..|...+.--+..+.. ..-...++.++.. ..+.+..+|...+..|..+++
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~------k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF------KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT------TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh------hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 2677888999999999999999887643322111 1122223333221 122366799999999999999
Q ss_pred ChhhHHHHHH
Q 003008 304 DDYYRILIIE 313 (858)
Q Consensus 304 ~~~~~~~i~~ 313 (858)
+|+-....++
T Consensus 209 ~Pd~V~~~~~ 218 (240)
T 3l9t_A 209 FPDLVKIELK 218 (240)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6765444444
No 113
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=71.47 E-value=63 Score=33.36 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=139.8
Q ss_pred cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcc----cHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhh
Q 003008 99 FGDSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKK----CIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSIS 174 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~----~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs 174 (858)
...+.+..|+..|. .-+.+.|..+..+..++.....+ ..+.+......+..|+.--. ++++-..+-..|+...
T Consensus 75 ~~~dll~~Li~~l~-~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLReci 151 (341)
T 1upk_A 75 YNSGLLSTLVADLQ-LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHSHHHHHHHTGG-GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHhcc-cCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHH
Confidence 45677778888776 66788888888887777554332 12233322222222222222 4556666777888888
Q ss_pred cCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-cCcchHHHHHhC---CCHHHHHHHHccCCHHHHHHH
Q 003008 175 SINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLS-VDKKHRLKIANT---DILPLLIKSLEDENMKVKEAA 250 (858)
Q Consensus 175 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs-~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~a 250 (858)
..+.....+...+.+..+.+....+ +=++...|..++..|- .+.......... -.....-++|.+++--.+.++
T Consensus 152 r~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 152 RHEPLAKIILWSEQFYDFFRYVEMS--TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp TSHHHHHHHHHSGGGGHHHHHTTCS--SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HhHHHHHHHhccHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 8888888888888899999999988 8888888998888863 444433333322 245567788999999999999
Q ss_pred HHHHHHHcCCcCchHHH---HhC-CCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhcChh
Q 003008 251 GGVLANLALSKSNHNIL---VEA-GVIPKLAMLLKANVEGSKVIRKEARNALIELAKDDY 306 (858)
Q Consensus 251 ~~~L~nL~~~~~~~~~i---~~~-g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~~~~ 306 (858)
+..|..|-.+..+...+ +.. .-+..++.+|++. ++.+|-.|-.+.--...+|.
T Consensus 230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~---sk~Iq~EAFhVFKvFVANP~ 286 (341)
T 1upk_A 230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---SRNIQFEAFHVFKVFVANPN 286 (341)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc---hhchhhhhhhheeeeeeCCC
Confidence 99999999887776644 222 3377778888765 67799999988887777753
No 114
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=71.26 E-value=1.1e+02 Score=32.47 Aligned_cols=135 Identities=10% Similarity=0.119 Sum_probs=87.5
Q ss_pred cCcHHHHHHHHccC-----------CHHHHHHHHHHHHHhhcCchhHHHHHh-cCcHHHHHHHhcCCCCCHHHHHHHHHH
Q 003008 145 SGCINLTVNLLRSE-----------SSAACEAAAGLLRSISSINVYRDLVAE-CGAIEEITGLLTRPSLTSEVKEQSMCT 212 (858)
Q Consensus 145 ~g~i~~Li~lL~~~-----------~~~~~~~a~~aL~nLs~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~~ 212 (858)
.+|+..|+..|..- +......++.+|+.|..+......+.. .+++..++..|.+. ++.++..++.+
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vleL 123 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKL 123 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHHH
Confidence 57788888887421 345566788899988887766666655 77899999999877 99999999999
Q ss_pred HHHhccCcc--h-HHHH----------HhCCCHHHHHHHHccC-CHHHHHHHHHHHHHHcCCcCc-------hHHHHhCC
Q 003008 213 LWNLSVDKK--H-RLKI----------ANTDILPLLIKSLEDE-NMKVKEAAGGVLANLALSKSN-------HNILVEAG 271 (858)
Q Consensus 213 L~nLs~~~~--~-~~~i----------~~~g~i~~Lv~ll~~~-~~~~~~~a~~~L~nL~~~~~~-------~~~i~~~g 271 (858)
|..+|..++ + ...+ .+..-...++..+..+ +.+.+..++..+-.+...++. |..+...|
T Consensus 124 L~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G 203 (386)
T 2bnx_A 124 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG 203 (386)
T ss_dssp HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 988886543 3 2222 1334556678777643 556666655555555544332 22344444
Q ss_pred CHHHHHHHHcc
Q 003008 272 VIPKLAMLLKA 282 (858)
Q Consensus 272 ~i~~Lv~ll~~ 282 (858)
+..++.-|+.
T Consensus 204 -L~~il~~Lr~ 213 (386)
T 2bnx_A 204 -LHQVLQELRE 213 (386)
T ss_dssp -HHHHHHHHTT
T ss_pred -hHHHHHHHhc
Confidence 4455555554
No 115
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=70.31 E-value=54 Score=34.88 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=94.7
Q ss_pred cCCCcHHHHHHHhcC----------CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHH
Q 003008 99 FGDSYVALFVQMLGL----------DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAG 168 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~----------s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~ 168 (858)
|..+++..|++.|.. ..|...+..++++|..+-.+..+ .+.++....++..|...+.+..+.++..++.
T Consensus 106 F~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G-~~~vl~~~~~i~~l~~~L~s~~~~~~~~ale 184 (383)
T 3eg5_B 106 FGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAK 184 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHH-HHHHHTCSSHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhh-HHHHHcChHHHHHHHHHhCCCchHHHHHHHH
Confidence 446778888887731 12457788899999888766655 4678877889999999999999999999999
Q ss_pred HHHHhhcCch--h-HHHHH----------hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc---chHHHHH----h
Q 003008 169 LLRSISSINV--Y-RDLVA----------ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK---KHRLKIA----N 228 (858)
Q Consensus 169 aL~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~---~~~~~i~----~ 228 (858)
.|..++..++ + ...+. +..-...++..|+.. .+.+.+..++..+-.+...+ +.|..++ .
T Consensus 185 LL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~ 263 (383)
T 3eg5_B 185 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPAEELDFRVHIRSELMR 263 (383)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9988876442 2 33322 233467788888764 26666665554444443322 2344444 5
Q ss_pred CCCHHHHHHHHccC-CHHHHH
Q 003008 229 TDILPLLIKSLEDE-NMKVKE 248 (858)
Q Consensus 229 ~g~i~~Lv~ll~~~-~~~~~~ 248 (858)
.|..+.+ .-++.. ++++..
T Consensus 264 ~Gl~~il-~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 264 LGLHQVL-QELREIENEDMKV 283 (383)
T ss_dssp TTHHHHH-HHHTTSCCHHHHH
T ss_pred CChHHHH-HHHhcCCChhHHH
Confidence 6655544 445543 555443
No 116
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=69.02 E-value=1.5e+02 Score=35.94 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=69.1
Q ss_pred CCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCC---cHHHHHHHHHHHHHhhc--Chh----HHHHHHHcC
Q 003008 434 EDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHS---SDAVRLATTHALERLSV--SRG----VCQIMEAEG 504 (858)
Q Consensus 434 ~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~---~~~v~~~a~~aL~~Ls~--~~~----~~~~l~~~g 504 (858)
.+++.|.+|-..|..+-.++ ++......+|.++ ++.+|..|+..|.+.-. +++ .+..+++ .
T Consensus 20 sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~-~ 89 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD-S 89 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH-H
T ss_pred CCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH-H
Confidence 37888999988888865433 3566777777654 68999999998887754 333 3444432 2
Q ss_pred ChHHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCCCh
Q 003008 505 VVHPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESLDP 564 (858)
Q Consensus 505 ~i~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~d~ 564 (858)
.+..+.. ......+..++...+.+|..+... ++...+ .+.++.++.++.++++
T Consensus 90 ll~~l~~-~~~~~~~~~IrnKL~~~la~l~~~--~~p~~W----p~~i~~l~~~~~~~~~ 142 (980)
T 3ibv_A 90 VWSYIKE-LSFLDEPAYISNAVQHLLTLLFLQ--LYPSNW----NDFFASLQGVIAASSQ 142 (980)
T ss_dssp HHHHHHH-CCSTTSCTHHHHHHHHHHHHHHHH--HTTTTC----TTHHHHHHHHHHHHCC
T ss_pred HHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHH--hCcccC----chHHHHHHHHhcCCCh
Confidence 3333333 111134567888888888887751 111111 1346667777765444
No 117
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=62.41 E-value=26 Score=42.60 Aligned_cols=131 Identities=14% Similarity=-0.032 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHH---c--cCCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCc
Q 003008 115 YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLL---R--SESSAACEAAAGLLRSISSIN-VYRDLVAECGA 188 (858)
Q Consensus 115 ~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL---~--~~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~ 188 (858)
.++..++.++.+++.++.+-.... ...++.++.++ . +.++.+|..++++|..++..- .+...+ ..+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~v 547 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPA 547 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHH
Confidence 577788999999999987544321 23344444433 3 347889999999999987521 111111 124
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hCCCHHHHHHHHccC--CHHHHHHHHHHHHHHcCC
Q 003008 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NTDILPLLIKSLEDE--NMKVKEAAGGVLANLALS 260 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~g~i~~Lv~ll~~~--~~~~~~~a~~~L~nL~~~ 260 (858)
++.|+..|. +.++..|+.++.+++.. .+..+. -...+..|..++.++ +.+.+..+..++..++..
T Consensus 548 l~~l~~~l~-----~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 548 INLLVRGLN-----SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHH-----SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-----hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 566666663 35789999999999942 333333 234555666777764 578888999999888653
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=62.26 E-value=1e+02 Score=31.76 Aligned_cols=135 Identities=17% Similarity=0.170 Sum_probs=94.6
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHHhCCCHHHHHHHHc-cCC
Q 003008 165 AAAGLLRSISSINVYRDLVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIANTDILPLLIKSLE-DEN 243 (858)
Q Consensus 165 ~a~~aL~nLs~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~~~g~i~~Lv~ll~-~~~ 243 (858)
.+...|.-|-++++.-+.++...|+..+....+-+ +.++.+.....|...|.....+..- -...+|-+++.+. +++
T Consensus 262 R~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYp--N~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 262 RTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYP--NNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS--CHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcccccccceeecccceeEEEEeecC--CcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCC
Confidence 34455555555557788899999999999999988 9999999999999988765432111 2345777777775 458
Q ss_pred HHHHHHHHHHHHHHcCCcC-chHHHHhCCCHHHHHHHHccCCCC----CHHHHHHHHHHHHHHh
Q 003008 244 MKVKEAAGGVLANLALSKS-NHNILVEAGVIPKLAMLLKANVEG----SKVIRKEARNALIELA 302 (858)
Q Consensus 244 ~~~~~~a~~~L~nL~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~----~~~~~~~a~~aL~nl~ 302 (858)
.++.....+.|+|...... .++.-+..|+|+.|-......+.- ...-+..|+.+++|.-
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~L 402 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCL 402 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHH
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHH
Confidence 8899999999999988764 444557789999888865432210 0113445666666654
No 119
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=61.26 E-value=44 Score=40.59 Aligned_cols=192 Identities=14% Similarity=0.051 Sum_probs=107.5
Q ss_pred CcHHHHHHHh---cC-CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCc
Q 003008 102 SYVALFVQML---GL-DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSIN 177 (858)
Q Consensus 102 g~i~~lv~lL---~~-s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~ 177 (858)
..++.++.++ .. +.++.+|..++++++.++..-.... ..+ ..+++.|+..+ + +.++..|+.++.+|+..
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~- 573 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRD- 573 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH-
Confidence 4556666544 21 2378999999999998875322211 222 35667777777 3 67889999999999843
Q ss_pred hhHHHHHh--cCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC--cchHHHHHhCCCHHHHHHHH----ccC--CHHHH
Q 003008 178 VYRDLVAE--CGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVD--KKHRLKIANTDILPLLIKSL----EDE--NMKVK 247 (858)
Q Consensus 178 ~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~--~~~~~~i~~~g~i~~Lv~ll----~~~--~~~~~ 247 (858)
.+..+.- .+.+..+.+++..+..+...+..+..++..+... ++.+.... ...+++++..+ ... +++.+
T Consensus 574 -~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~ 651 (971)
T 2x1g_F 574 -CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYL-DIIVSPCFEELQAICQADSKTPAAR 651 (971)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHHHHHHHHTC---CHHHH
T ss_pred -HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhH
Confidence 3343432 3345666777777423577888888888887642 23332222 22345555443 222 33333
Q ss_pred HHHHHHHHHHc---CC--c---Cc------hH--HHHhCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHhc
Q 003008 248 EAAGGVLANLA---LS--K---SN------HN--ILVEAGVIPKLAMLLKANVEGSKVIRKEARNALIELAK 303 (858)
Q Consensus 248 ~~a~~~L~nL~---~~--~---~~------~~--~i~~~g~i~~Lv~ll~~~~~~~~~~~~~a~~aL~nl~~ 303 (858)
.....++..|+ .. . .. .. .-.....++.+..++..... +..+.+.+.+++.+++.
T Consensus 652 ~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 652 IRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVE-EIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence 44444444443 11 0 00 01 11234577777777765322 34477888888888764
No 120
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=60.21 E-value=73 Score=33.91 Aligned_cols=148 Identities=18% Similarity=0.213 Sum_probs=92.8
Q ss_pred cCCCcHHHHHHHhcC----C------CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHH
Q 003008 99 FGDSYVALFVQMLGL----D------YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAG 168 (858)
Q Consensus 99 ~~~g~i~~lv~lL~~----s------~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~ 168 (858)
|..+++..|+..|.. . .+...+..++++|..+.....+ .+.++...+++..|...|.+.++.++..++.
T Consensus 44 F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~G-l~~vl~~~~~i~~l~~sL~s~~~~~r~~vle 122 (386)
T 2bnx_A 44 FGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFG-IKTMLETEEGILLLVRAMDPAVPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHH-HHHHHHSSSHHHHHHHTCCTTSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHH-HHHHHcCcHHHHHHHHHhCCCCchHHHHHHH
Confidence 556777888776631 1 1456778889999888776655 4577777789999999999999999988988
Q ss_pred HHHHhhcCch--h-HHHHH----------hcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc---chHHHHH----h
Q 003008 169 LLRSISSINV--Y-RDLVA----------ECGAIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK---KHRLKIA----N 228 (858)
Q Consensus 169 aL~nLs~~~~--~-~~~i~----------~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~---~~~~~i~----~ 228 (858)
.|..++..++ . ...+. +..-...++..+... .+.+.+..++..+-.+...+ +.|..++ .
T Consensus 123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~ 201 (386)
T 2bnx_A 123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPAEELDFRVHIRSELMR 201 (386)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Confidence 8888877543 3 33222 233455678877754 25566655544444443332 2244444 5
Q ss_pred CCCHHHHHHHHcc-CCHHHHHH
Q 003008 229 TDILPLLIKSLED-ENMKVKEA 249 (858)
Q Consensus 229 ~g~i~~Lv~ll~~-~~~~~~~~ 249 (858)
.|. ..++.-++. .++++..+
T Consensus 202 ~GL-~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 202 LGL-HQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TTH-HHHHHHHTTCCCHHHHHH
T ss_pred CCh-HHHHHHHhccCChhHHHH
Confidence 564 444455554 46655444
No 121
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=56.77 E-value=35 Score=41.88 Aligned_cols=171 Identities=9% Similarity=0.024 Sum_probs=103.0
Q ss_pred ccHHHHHHHhCCC----CHHHHHHHHHHHHHh----cCChhh-HHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc
Q 003008 422 DGVARLVLILGLE----DERAIARAAESIADI----SINEHM-RMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV 492 (858)
Q Consensus 422 ~~i~~Lv~lL~~~----~~~v~~~a~~aL~~l----~~~~~~-~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~ 492 (858)
..+..+..++.++ ++.++..+.-+++.+ |..... ...++ ......|...+...+.+-+..+..+|+|+..
T Consensus 391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3566777788763 556666666666552 222111 00000 1123334445566777888899999999985
Q ss_pred ChhHHHHHHHcCChHHHHHhhcC-----CCccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhc--CCChh
Q 003008 493 SRGVCQIMEAEGVVHPLVNTLKN-----LDISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAE--SLDPS 565 (858)
Q Consensus 493 ~~~~~~~l~~~g~i~~Li~lL~~-----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~--s~d~~ 565 (858)
. ..++.|..++.. .+.+..++..|.++|.++.. ... ...-+.+..+.. ..+++
T Consensus 470 p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~---~~p-------~~v~~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 470 P----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK---RDP-------RKVQEIVLPIFLNVAIKSE 529 (1056)
T ss_dssp G----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG---TCH-------HHHHHHHHHHHHCTTSCHH
T ss_pred h----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh---hch-------HHHHHHHHHHhcCCCCChH
Confidence 2 246666666641 23345688889999888875 111 113456777773 46788
Q ss_pred HHHHHH-HHHHhhccccchhhhHhhccchhHHHHhhcC-CCHHHHHHHHHHHHHhhcCCc
Q 003008 566 IELTGN-VIEAAVSETTTSYGKVLDSVFIGRMIGIMKT-SYPDLQRKAASILEFITIIDP 623 (858)
Q Consensus 566 v~~~a~-~l~~L~~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~~l~~~~~ 623 (858)
+|..|+ .|... ++. ...+..+...+.. .+..|.......|.+++....
T Consensus 530 vRiaA~~~Lm~t--~P~--------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 530 LRIRSCIVFFES--KPS--------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHHHHHT--CCC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH--CcC--------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 888887 44321 111 1234556666654 677899999999999987653
No 122
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=55.19 E-value=45 Score=40.95 Aligned_cols=138 Identities=7% Similarity=-0.009 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhhcCc-hhHHHHHhcCc
Q 003008 115 YDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS-----ESSAACEAAAGLLRSISSIN-VYRDLVAECGA 188 (858)
Q Consensus 115 ~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~-----~~~~~~~~a~~aL~nLs~~~-~~~~~i~~~g~ 188 (858)
.++..++.++++++.++..-....+.-+ -...++.|+.+... ..+.++..+++++...+..- .+.. .. ..+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~-l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~-~l-~~v 541 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRF-VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-FL-RTV 541 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHH-HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HH-HHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHH-HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH-HH-HHH
Confidence 5788899999999988854322101111 12344444443321 12334445778888776421 1222 22 235
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcchHHHHH--hC----CCHHHHH----HHHccCCHHHHHHHHHHHHHHc
Q 003008 189 IEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKKHRLKIA--NT----DILPLLI----KSLEDENMKVKEAAGGVLANLA 258 (858)
Q Consensus 189 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~~~~~i~--~~----g~i~~Lv----~ll~~~~~~~~~~a~~~L~nL~ 258 (858)
++.+++.+.++ ++.++..|+.+|.+++.. ++..+. .. ..++.++ .++..-+.+-......++..+.
T Consensus 542 l~~ll~~l~~~--~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 542 ILKLFEFMHET--HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHHHHHTTSS--CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 77888888876 899999999999999964 233332 11 2244433 3444444455556666666665
Q ss_pred C
Q 003008 259 L 259 (858)
Q Consensus 259 ~ 259 (858)
.
T Consensus 618 ~ 618 (1049)
T 3m1i_C 618 S 618 (1049)
T ss_dssp H
T ss_pred H
Confidence 4
No 123
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=54.98 E-value=1e+02 Score=37.24 Aligned_cols=131 Identities=14% Similarity=0.042 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHcCcHHHHHHhh---cCCcHHHHHHHHHHHHHhhcC-hhHHHHHHHcCCh
Q 003008 432 GLEDERAIARAAESIADISIN-EHMRMLFKEAGAIKYLVKLL---DHSSDAVRLATTHALERLSVS-RGVCQIMEAEGVV 506 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~l~~~-~~~~~~l~~~g~i~~Lv~LL---~~~~~~v~~~a~~aL~~Ls~~-~~~~~~l~~~g~i 506 (858)
.+.+...++.++.+++.++.. .+.. ...++.++..+ ..+++.+|..++++++.++.. ....+.+ ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHH
Confidence 567888899999999996532 1110 12233333332 335788999999999998862 2212222 3578
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHhcCCCcccccccccccC--cCcHHHHHhhcCC--ChhHHHHHH-HHHHhhc
Q 003008 507 HPLVNTLKNLDISESLMEKTLDILGRILDPSKEMKSKFYDIPV--NGSEKGLDAAESL--DPSIELTGN-VIEAAVS 578 (858)
Q Consensus 507 ~~Li~lL~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~--~~i~~Li~ll~s~--d~~v~~~a~-~l~~L~~ 578 (858)
+.|+..+.+ +.++..|+.+|.+++... +..+.+. ..+..+..++... +.+.+.... ++..++.
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~~-----~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICREC-----KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHHT-----GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHHH-----HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 888888862 568899999999998622 1122221 2233344555543 345565555 6766654
No 124
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=54.42 E-value=24 Score=43.12 Aligned_cols=98 Identities=14% Similarity=0.066 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHHhcCCh-hhHHHHHHcCcHHHHHHhhcC-----CcHHHHHHHHHHHHHhhc-ChhHHHHHHHcCCh
Q 003008 434 EDERAIARAAESIADISINE-HMRMLFKEAGAIKYLVKLLDH-----SSDAVRLATTHALERLSV-SRGVCQIMEAEGVV 506 (858)
Q Consensus 434 ~~~~v~~~a~~aL~~l~~~~-~~~~~l~~~g~i~~Lv~LL~~-----~~~~v~~~a~~aL~~Ls~-~~~~~~~l~~~g~i 506 (858)
.++..++.++++++.++... +....-.-..+++.|++++.+ +...++..++++++..+. -..+.+.+. ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence 57899999999999976533 222323335678888998864 334566677888888765 111111111 134
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 507 HPLVNTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 507 ~~Li~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
..|+..+.++ .+.++..|++++.+++.
T Consensus 543 ~~L~~~l~~~--~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHTTCS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CHHHHHHHHHHHHHHHH
Confidence 4455555433 37899999999999987
No 125
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=52.50 E-value=42 Score=41.16 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=67.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcC-------CcHHHHHHHHHHHHHhhcC-hhH
Q 003008 425 ARLVLILGLEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDH-------SSDAVRLATTHALERLSVS-RGV 496 (858)
Q Consensus 425 ~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~-------~~~~v~~~a~~aL~~Ls~~-~~~ 496 (858)
..|...+...+.+-+..+.++|+|+.. ...++.|..++.. ....+|..|++||.+++.. ++
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~- 511 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR- 511 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-
Confidence 345556677788888999999999877 4578888888742 2468999999999999863 22
Q ss_pred HHHHHHcCChHHHHHhhcCCCccHHHHHHHHHHHHHh
Q 003008 497 CQIMEAEGVVHPLVNTLKNLDISESLMEKTLDILGRI 533 (858)
Q Consensus 497 ~~~l~~~g~i~~Li~lL~~~~~~~~~~~~a~~~L~~l 533 (858)
.+-+.++.+..+..++.++|-.|...|...
T Consensus 512 -------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 512 -------KVQEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp -------HHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 123456778877788899998888877553
No 126
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=52.02 E-value=96 Score=32.05 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred HHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCcHHHHHHHhcCCCCCH
Q 003008 125 EALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINV-YRDLVAECGAIEEITGLLTRPSLTS 203 (858)
Q Consensus 125 ~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~ 203 (858)
.-|.++-.++.+..+-++ +.+++..+.....-.+.++.+.....|...|.... +..-+ ...+|-++..+.-.+ +.
T Consensus 264 FDLL~LLmHdSnAIDGFV-k~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~-eD 339 (619)
T 3c2g_A 264 FDLLGLLLHDSDAIDGFV-RSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP-DD 339 (619)
T ss_dssp HHHHHHHCCSHHHHHHHH-HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC-CH
T ss_pred HHHHHHHhccccccccee-ecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC-Cc
Confidence 347788888888777787 69999999999999999988888888887765443 11111 234677777766443 78
Q ss_pred HHHHHHHHHHHHhccCcch-HHHHHhCCCHHHHHHHHcc
Q 003008 204 EVKEQSMCTLWNLSVDKKH-RLKIANTDILPLLIKSLED 241 (858)
Q Consensus 204 ~~~~~a~~~L~nLs~~~~~-~~~i~~~g~i~~Lv~ll~~ 241 (858)
++.......|.|.-.+... |......|+++.|-..+..
T Consensus 340 dvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 340 EVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred ceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 8899999999999877765 6666689999998887543
No 127
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=37.83 E-value=1.3e+02 Score=27.45 Aligned_cols=93 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li 510 (858)
++|.......|..+..-.. .. ..++..|.+-|.+.++.++..|...|-.+..+ ......+.....+..|+
T Consensus 30 ~~Dw~~~leicD~I~~~~~--~~------keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGSTPN--GA------KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp SCCHHHHHHHHHHHHHSSS--HH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCc--cH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 4566665666655554211 11 34667788888899999999999988888873 55566666667788888
Q ss_pred HhhcCCCccHHHHHHHHHHHHHhc
Q 003008 511 NTLKNLDISESLMEKTLDILGRIL 534 (858)
Q Consensus 511 ~lL~~~~~~~~~~~~a~~~L~~l~ 534 (858)
.++. +..+..+++.+...+..-.
T Consensus 102 ~l~~-~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 102 AVIK-NKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred HHHc-cCCCHHHHHHHHHHHHHHH
Confidence 8887 4456788888877765444
No 128
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=37.37 E-value=57 Score=29.05 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=53.8
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHccCCHHHHHHHHHHHHHHcC
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLEDENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~a~~~L~nL~~ 259 (858)
++..+.+-|.+. ++.++..|+.+|-.+..+.+ ....+.....+..|++++...++.++..++..+...+.
T Consensus 43 a~rai~Krl~~~--n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHK--DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 356777777877 88888888887777765443 35566677788888898887889999999999887753
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=35.40 E-value=58 Score=28.99 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhc
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISS 175 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~ 175 (858)
..++..+.+.|+ +.++.++..|+..|-.+..+........+.....+..|+.++...++.++..+...+...+.
T Consensus 41 k~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 41 KDCLRSIMRRVN-HKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 345666777787 77888888888776655554433222233345677778888877888899988888887754
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=34.57 E-value=2.2e+02 Score=30.10 Aligned_cols=65 Identities=11% Similarity=0.002 Sum_probs=51.1
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 003008 421 IDGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERL 490 (858)
Q Consensus 421 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~L 490 (858)
...++.++.+-.+++.+++...+..|...+ ...+.. ...++.|..||+++++.|.+.+..+..++
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 348889999999999999999999999954 333321 44677888899988899988887777665
No 131
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=33.65 E-value=29 Score=32.24 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=49.2
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHhhhcC--ccchHHHHHcCchHHHHHhhhc------CChhH-HHHHHHHhc
Q 003008 792 FPLVKLIEEGSNRAVEAGLAILYNLSMD--SENHSAIIAAGAVPALRRIVLS------QRPQW-TRALRLLRN 855 (858)
Q Consensus 792 ~~Lv~lL~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~v~~L~~ll~~------~~~~~-~~al~~l~~ 855 (858)
+.|.+-|.++++.++..|+..|-.+..+ ...+..+.....+..|++++.. .++.+ ++++.++..
T Consensus 53 ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 53 RLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 5566668888999999999999888876 4567778888888889998853 34556 888777653
No 132
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.38 E-value=3.8e+02 Score=26.45 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=84.8
Q ss_pred HHHHHHhcC---CCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhhcCchhHH
Q 003008 105 ALFVQMLGL---DYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRSESSAACEAAAGLLRSISSINVYRD 181 (858)
Q Consensus 105 ~~lv~lL~~---s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~~~~~~~~~a~~aL~nLs~~~~~~~ 181 (858)
..++++|.. ..| +.+...+.-...+..+.+. ... ...++.++.+..+.+.++|...+..+...+..+..
T Consensus 15 ~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp---~ll--~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-- 86 (257)
T 3gs3_A 15 AKVVDWCNELVIASP-STKCELLAKVQETVLGSCA---ELA--EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-- 86 (257)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTG---GGH--HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCH---hHH--HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH--
Confidence 345555531 234 5777888888887765432 222 67788888888788999999999999888743321
Q ss_pred HHHhcCcHHHHHHHhcCCCCCHHHHHHHHHHHHHh--------ccCcch----HHHHH-hCCCHHHHHHHHccCCHHHHH
Q 003008 182 LVAECGAIEEITGLLTRPSLTSEVKEQSMCTLWNL--------SVDKKH----RLKIA-NTDILPLLIKSLEDENMKVKE 248 (858)
Q Consensus 182 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nL--------s~~~~~----~~~i~-~~g~i~~Lv~ll~~~~~~~~~ 248 (858)
.-..+++.|..++++. ++.+.+.+..+..++ +.++.. ....- -...-..++.++.+++..++.
T Consensus 87 --l~~~~l~~L~~Ll~d~--d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl 162 (257)
T 3gs3_A 87 --LLPHVINVVSMLLRDN--SAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRT 162 (257)
T ss_dssp --GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHH
T ss_pred --HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHH
Confidence 1122478888899876 898888776554443 222210 11110 111223455556666666776
Q ss_pred HHHHHHHHH
Q 003008 249 AAGGVLANL 257 (858)
Q Consensus 249 ~a~~~L~nL 257 (858)
.|.+.+..+
T Consensus 163 ~~iKF~e~v 171 (257)
T 3gs3_A 163 NAIKFLEGV 171 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665443
No 133
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=30.75 E-value=93 Score=28.49 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=51.8
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHc
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDILPLLIKSLED-ENMKVKEAAGGVLANLA 258 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~a~~~L~nL~ 258 (858)
++..|.+-|++. ++.++..|+.+|-.+..+. .....+.....+..|++++.. .++.|++.++..+...+
T Consensus 53 A~ral~krl~~~--n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHK--VPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 356667777777 8999888888887776543 346677777788888888875 47888888888887665
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=30.45 E-value=2.6e+02 Score=27.64 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=46.6
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHHhc-CChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHh
Q 003008 422 DGVARLVLILGLEDERAIARAAESIADIS-INEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERL 490 (858)
Q Consensus 422 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~L 490 (858)
..++.++.+..+++.+++...+..+...+ ..++ .-...++.|..|++++++.|.+.+..+..++
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~-----l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVE-----LLPHVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 36777777777788899999999998855 2222 2245677888888888888888877776554
No 135
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=30.20 E-value=1.1e+02 Score=27.64 Aligned_cols=70 Identities=17% Similarity=0.099 Sum_probs=54.9
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCcc--hHHHHHhCCCHHHHHHHHcc------CCHHHHHHHHHHHHHHcC
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDKK--HRLKIANTDILPLLIKSLED------ENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~~--~~~~i~~~g~i~~Lv~ll~~------~~~~~~~~a~~~L~nL~~ 259 (858)
++..|.+-+++. ++.++..|+.+|-.+..+.+ ....+.....+..|++++.. .++.++..++..+...+.
T Consensus 49 a~ral~krl~~~--n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSP--QEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 466777777887 99999999988888765443 46777777888999999863 478899999999988764
No 136
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=29.76 E-value=1.6e+02 Score=26.34 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li 510 (858)
++|.......|..+..-.. . -..++..|.+-|.+.++.++..|...|-.+.. .......+.....+..|+
T Consensus 16 ~~dw~~~leicD~I~~~~~--~------~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 16 EQDWSAIQNFCEQVNTDPN--G------PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp SCCHHHHHHHHHHHHHSSH--H------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCc--c------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3455555555555544211 1 13457777888889999999999999988887 356667777777888888
Q ss_pred HhhcC----CCccHHHHHHHHHHHHHhcC
Q 003008 511 NTLKN----LDISESLMEKTLDILGRILD 535 (858)
Q Consensus 511 ~lL~~----~~~~~~~~~~a~~~L~~l~~ 535 (858)
.++.. +..+..+++.+...+..-+.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 88863 12468899888777655543
No 137
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=29.67 E-value=4.6e+02 Score=26.60 Aligned_cols=146 Identities=13% Similarity=0.147 Sum_probs=93.0
Q ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHhcCChhhHHHHHH--cCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc-Ch
Q 003008 424 VARLVLILGLE------DERAIARAAESIADISINEHMRMLFKE--AGAIKYLVKLLDHSSDAVRLATTHALERLSV-SR 494 (858)
Q Consensus 424 i~~Lv~lL~~~------~~~v~~~a~~aL~~l~~~~~~~~~l~~--~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~-~~ 494 (858)
......+++++ +.+....|...|-.+++.-+.-.++.+ -..+..|+ +.....+.+++.|+..++..-. +|
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 34455666665 455678999999999998888777775 34444444 3344567899999999998888 67
Q ss_pred hHHHHHHHc--CChHHHH----HhhcCC-CccHHHHHHHHHHHHHhcCCCcccccccccccCcCcHHHHHhhcCC--Chh
Q 003008 495 GVCQIMEAE--GVVHPLV----NTLKNL-DISESLMEKTLDILGRILDPSKEMKSKFYDIPVNGSEKGLDAAESL--DPS 565 (858)
Q Consensus 495 ~~~~~l~~~--g~i~~Li----~lL~~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~i~~~~~i~~Li~ll~s~--d~~ 565 (858)
+....+.+. ..+..+. .++..+ .....+.+.-..+|.-|...+.++ ...|+..|++++... +++
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-------~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-------PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC---------CCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-------hhccHHHHHHHHccCCCCHH
Confidence 776666553 2222222 222211 113456667777788887733112 245778888888777 888
Q ss_pred HHHHHH-HHHHhh
Q 003008 566 IELTGN-VIEAAV 577 (858)
Q Consensus 566 v~~~a~-~l~~L~ 577 (858)
++..++ .+..+.
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 888877 555443
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=29.04 E-value=1.8e+02 Score=26.73 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhcC--hhHHHHHHHcCChHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSVS--RGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~l~~~g~i~~Li 510 (858)
++|.......|..+..-.. .. ..++..|.+-|.+.++.++..|...|-.+..+ ......+.....+..|+
T Consensus 28 ~~Dw~~ileicD~I~~~~~--~~------k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKELE--GP------QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp SCCHHHHHHHHHHHHHSTT--HH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCCc--cH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3555555555555554211 11 23567788888999999999999999888874 45566677777888888
Q ss_pred HhhcC----CCccHHHHHHHHHHHHHhcC
Q 003008 511 NTLKN----LDISESLMEKTLDILGRILD 535 (858)
Q Consensus 511 ~lL~~----~~~~~~~~~~a~~~L~~l~~ 535 (858)
.++.. +..+..+++.+...+..-..
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 88862 23468899888887765543
No 139
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=28.06 E-value=1.8e+02 Score=28.15 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHHhcCChhhHHHHHHcCcHHHHHHhhcCCcHHHHHHHHHHHHHhhc--ChhHHHHHHHcCChHHHH
Q 003008 433 LEDERAIARAAESIADISINEHMRMLFKEAGAIKYLVKLLDHSSDAVRLATTHALERLSV--SRGVCQIMEAEGVVHPLV 510 (858)
Q Consensus 433 ~~~~~v~~~a~~aL~~l~~~~~~~~~l~~~g~i~~Lv~LL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~l~~~g~i~~Li 510 (858)
.+|.......|..+..-...+ ..++..|.+-|.+.++.++..|...|-.+.. .......+.....+..|.
T Consensus 23 ~~dw~~ileicD~I~~~~~~~--------k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~ 94 (226)
T 3zyq_A 23 ETDWESILQICDLIRQGDTQA--------KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELK 94 (226)
T ss_dssp SCCHHHHHHHHHHHHTTSSCH--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCccH--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHH
Confidence 445555556666654321111 2367778888889999999999999888887 344555666666677777
Q ss_pred HhhcCCCccHHHHHHHHHHHHHhcC
Q 003008 511 NTLKNLDISESLMEKTLDILGRILD 535 (858)
Q Consensus 511 ~lL~~~~~~~~~~~~a~~~L~~l~~ 535 (858)
.++. +..+..+++.+...+.....
T Consensus 95 ~l~~-~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 95 DLLK-RQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHH-HCCCHHHHHHHHHHHHHHHH
T ss_pred HHhc-cCCCHHHHHHHHHHHHHHHH
Confidence 7776 44567888888777765543
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=28.05 E-value=1e+02 Score=27.61 Aligned_cols=70 Identities=20% Similarity=0.098 Sum_probs=55.2
Q ss_pred cHHHHHHHhcCCCCCHHHHHHHHHHHHHhccCc--chHHHHHhCCCHHHHHHHHcc------CCHHHHHHHHHHHHHHcC
Q 003008 188 AIEEITGLLTRPSLTSEVKEQSMCTLWNLSVDK--KHRLKIANTDILPLLIKSLED------ENMKVKEAAGGVLANLAL 259 (858)
Q Consensus 188 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLs~~~--~~~~~i~~~g~i~~Lv~ll~~------~~~~~~~~a~~~L~nL~~ 259 (858)
++..|.+-+++. ++.++..|+.+|-.+..+. .....+.....+..|++++.. .++.+++.++..+...+.
T Consensus 39 a~rai~krl~~~--n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSP--QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 456777777887 9999999999888887553 356777788889999999864 378899999988887754
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=27.27 E-value=1.2e+02 Score=27.31 Aligned_cols=74 Identities=14% Similarity=0.013 Sum_probs=52.4
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHcccCCcccHHHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhh
Q 003008 101 DSYVALFVQMLGLDYDPLDREQAVEALWKYSLGGKKCIDYIMQFSGCINLTVNLLRS------ESSAACEAAAGLLRSIS 174 (858)
Q Consensus 101 ~g~i~~lv~lL~~s~d~~~~~~a~~~L~~la~~~~~~~~~ii~~~g~i~~Li~lL~~------~~~~~~~~a~~aL~nLs 174 (858)
..++..|.+.+. +.++.++..|+..|-.+..+........+.....+..|++++.. .+..++..++..+...+
T Consensus 47 k~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 47 PLATRLLAHKIQ-SPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 345666777887 78889999998777666654443322334456678888888863 47888988888888775
Q ss_pred c
Q 003008 175 S 175 (858)
Q Consensus 175 ~ 175 (858)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 4
No 142
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=23.25 E-value=4.3e+02 Score=24.20 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=65.0
Q ss_pred CChhhHHHHHHcCcHHHHHHhhcC------CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHH
Q 003008 451 INEHMRMLFKEAGAIKYLVKLLDH------SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLME 524 (858)
Q Consensus 451 ~~~~~~~~l~~~g~i~~Lv~LL~~------~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~ 524 (858)
.....+..+++.|++..+-.+|.. ++-.+|.....+|.+|-- .++.+.++|.-..+..+-+++.+..+.++
T Consensus 64 ~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI---~~e~Lk~SglGkvV~~l~k~~~et~~nkr 140 (170)
T 3nfq_A 64 SKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV---KTEHLKESGLGRVVIFYTKSKRVEAQLAR 140 (170)
T ss_dssp TCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHHSHHHHHHHHHHCTTSCHHHHH
T ss_pred hHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC---CHHHHhhCCCCceeeehhcCCcccHHHHH
Confidence 345667889999999999999873 457899999888888753 35677777776777777777777888999
Q ss_pred HHHHHHHHhcC
Q 003008 525 KTLDILGRILD 535 (858)
Q Consensus 525 ~a~~~L~~l~~ 535 (858)
.|...+..-+.
T Consensus 141 la~~Li~~WsR 151 (170)
T 3nfq_A 141 LAEKLIAEWTR 151 (170)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99888888776
No 143
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=20.64 E-value=1.3e+02 Score=29.83 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCChh-hHHHHHHcCcHHHHHHhhc----C----CcHHHHHHHHHHHHHhhcC-hhHHHHHH
Q 003008 432 GLEDERAIARAAESIADISINEH-MRMLFKEAGAIKYLVKLLD----H----SSDAVRLATTHALERLSVS-RGVCQIME 501 (858)
Q Consensus 432 ~~~~~~v~~~a~~aL~~l~~~~~-~~~~l~~~g~i~~Lv~LL~----~----~~~~v~~~a~~aL~~Ls~~-~~~~~~l~ 501 (858)
.+..+..+.-++++++|+-.++. .++.+........++..+. + .+..+|-.++..+.|++.. ...+.
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--- 176 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--- 176 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---
Confidence 34567788999999999777677 5665554333444454432 1 3577888999999999861 11111
Q ss_pred HcCChHHHHHhhcC----C---CccHHHHHHHHHHHHHhcC
Q 003008 502 AEGVVHPLVNTLKN----L---DISESLMEKTLDILGRILD 535 (858)
Q Consensus 502 ~~g~i~~Li~lL~~----~---~~~~~~~~~a~~~L~~l~~ 535 (858)
+......++.++.. . .++.+....+..+|+++..
T Consensus 177 ~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233455555542 1 2357788888888888875
No 144
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=20.26 E-value=4.6e+02 Score=23.30 Aligned_cols=82 Identities=10% Similarity=0.117 Sum_probs=63.5
Q ss_pred CChhhHHHHHHcCcHHHHHHhhcC------CcHHHHHHHHHHHHHhhcChhHHHHHHHcCChHHHHHhhcCCCccHHHHH
Q 003008 451 INEHMRMLFKEAGAIKYLVKLLDH------SSDAVRLATTHALERLSVSRGVCQIMEAEGVVHPLVNTLKNLDISESLME 524 (858)
Q Consensus 451 ~~~~~~~~l~~~g~i~~Lv~LL~~------~~~~v~~~a~~aL~~Ls~~~~~~~~l~~~g~i~~Li~lL~~~~~~~~~~~ 524 (858)
.....+..+++.|.+..+-.+|.. ++..+|.....+|.+|-- .++.+.++|.-..+..+-+++.+..+.++
T Consensus 49 ~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI---~~e~Lk~SglGkvv~~l~k~~~et~~nk~ 125 (145)
T 2xpp_A 49 MSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI---HKEHLVTSGVGKIVYFYSINPKESKEVRA 125 (145)
T ss_dssp TCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC---CHHHHHHHCHHHHHHHHHHCTTSCHHHHH
T ss_pred hhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC---CHHHhhcCCCCcchhhhhcCCccCHHHHH
Confidence 345567889999999999999873 467899998888888743 36778888777777777778888888998
Q ss_pred HHHHHHHHhcC
Q 003008 525 KTLDILGRILD 535 (858)
Q Consensus 525 ~a~~~L~~l~~ 535 (858)
.|...+..-+.
T Consensus 126 la~~Li~~WsR 136 (145)
T 2xpp_A 126 SAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88877765443
Done!