Query 003010
Match_columns 858
No_of_seqs 365 out of 2466
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 15:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1046 Puromycin-sensitive am 100.0 2E-152 4E-157 1370.6 79.4 828 3-851 24-880 (882)
2 TIGR02412 pepN_strep_liv amino 100.0 1E-124 2E-129 1132.6 81.3 769 13-830 13-802 (831)
3 COG0308 PepN Aminopeptidase N 100.0 8.5E-92 1.8E-96 845.6 65.9 792 9-834 12-832 (859)
4 TIGR02414 pepN_proteo aminopep 100.0 9.3E-84 2E-88 764.8 74.3 708 11-763 4-766 (863)
5 PRK14015 pepN aminopeptidase N 100.0 7.5E-83 1.6E-87 759.5 73.2 710 11-763 16-776 (875)
6 TIGR02411 leuko_A4_hydro leuko 100.0 8.5E-77 1.9E-81 688.7 41.6 426 10-465 7-453 (601)
7 PF01433 Peptidase_M1: Peptida 100.0 3.6E-75 7.8E-80 656.6 37.6 385 9-395 1-390 (390)
8 KOG1047 Bifunctional leukotrie 100.0 2.1E-53 4.6E-58 453.6 28.4 430 11-463 13-460 (613)
9 PF11838 ERAP1_C: ERAP1-like C 100.0 2.2E-49 4.7E-54 435.5 28.4 313 532-849 1-324 (324)
10 KOG1932 TATA binding protein a 100.0 1.1E-34 2.4E-39 331.5 36.0 427 16-464 27-505 (1180)
11 COG3975 Predicted protease wit 99.2 1.4E-09 3.1E-14 118.3 20.3 298 158-475 115-447 (558)
12 PF13485 Peptidase_MA_2: Pepti 99.1 6.1E-11 1.3E-15 111.0 6.4 106 299-418 23-128 (128)
13 PF10460 Peptidase_M30: Peptid 97.7 0.0019 4.1E-08 69.9 17.5 222 216-455 16-285 (366)
14 PF05299 Peptidase_M61: M61 gl 97.0 0.00043 9.3E-09 63.0 3.1 44 301-344 4-58 (122)
15 PF11940 DUF3458: Domain of un 95.8 2.5 5.4E-05 46.8 23.2 306 468-802 6-344 (367)
16 PF07607 DUF1570: Protein of u 95.6 0.0069 1.5E-07 55.8 2.3 39 303-341 3-43 (128)
17 PF04450 BSP: Peptidase of pla 95.5 0.29 6.3E-06 49.3 13.6 172 235-450 25-204 (205)
18 smart00638 LPD_N Lipoprotein N 91.1 4.8 0.0001 47.9 16.0 198 549-763 356-560 (574)
19 PF10026 DUF2268: Predicted Zn 90.6 0.82 1.8E-05 46.0 7.5 100 239-345 4-113 (195)
20 PRK04860 hypothetical protein; 85.8 1.4 3E-05 42.6 5.2 70 236-314 5-76 (160)
21 PF10023 DUF2265: Predicted am 84.9 0.96 2.1E-05 48.6 4.0 40 299-344 163-202 (337)
22 PF01863 DUF45: Protein of unk 83.6 6.1 0.00013 39.9 9.2 95 234-355 108-202 (205)
23 COG4324 Predicted aminopeptida 80.9 1.7 3.6E-05 44.3 3.7 40 299-344 195-234 (376)
24 smart00731 SprT SprT homologue 80.0 1.8 3.8E-05 41.4 3.4 65 242-315 5-73 (146)
25 PF01347 Vitellogenin_N: Lipop 78.6 32 0.00069 41.3 14.5 196 550-762 395-603 (618)
26 PF12725 DUF3810: Protein of u 71.5 5 0.00011 43.6 4.5 31 301-343 196-226 (318)
27 PF13646 HEAT_2: HEAT repeats; 65.1 14 0.0003 31.2 5.2 75 659-745 14-88 (88)
28 PF01447 Peptidase_M4: Thermol 62.9 12 0.00026 35.8 4.7 74 231-312 67-146 (150)
29 COG0362 Gnd 6-phosphogluconate 62.5 53 0.0012 36.2 9.8 117 566-703 312-443 (473)
30 PF03272 Enhancin: Viral enhan 59.8 2.3E+02 0.005 35.0 15.8 129 303-451 238-377 (775)
31 PF12315 DUF3633: Protein of u 59.6 14 0.0003 36.9 4.6 41 301-343 93-133 (212)
32 PF04234 CopC: CopC domain; I 57.9 45 0.00097 29.2 7.1 63 44-109 17-82 (97)
33 PF10989 DUF2808: Protein of u 55.8 34 0.00074 32.5 6.5 48 72-120 75-122 (146)
34 COG1451 Predicted metal-depend 55.3 65 0.0014 33.1 8.8 93 234-353 119-211 (223)
35 PF01435 Peptidase_M48: Peptid 55.0 8.3 0.00018 39.5 2.4 70 242-320 35-108 (226)
36 PRK04351 hypothetical protein; 53.6 13 0.00029 35.4 3.3 15 298-312 58-72 (149)
37 COG4783 Putative Zn-dependent 51.0 17 0.00037 40.9 4.0 53 256-313 90-142 (484)
38 PF06114 DUF955: Domain of unk 48.1 17 0.00038 32.5 3.1 19 300-318 41-59 (122)
39 COG3227 LasB Zinc metalloprote 47.0 22 0.00047 40.0 4.0 111 227-344 265-381 (507)
40 PF10263 SprT-like: SprT-like 44.2 15 0.00032 35.3 2.1 18 297-314 56-73 (157)
41 COG0501 HtpX Zn-dependent prot 43.3 35 0.00076 36.7 5.1 65 247-319 108-175 (302)
42 PRK05457 heat shock protein Ht 42.8 42 0.0009 35.9 5.4 68 240-316 79-149 (284)
43 KOG2062 26S proteasome regulat 42.7 56 0.0012 38.8 6.5 127 653-788 494-629 (929)
44 PRK03982 heat shock protein Ht 40.6 60 0.0013 34.8 6.3 66 240-316 70-140 (288)
45 PRK01345 heat shock protein Ht 40.0 49 0.0011 36.0 5.5 68 240-316 69-139 (317)
46 KOG1967 DNA repair/transcripti 40.0 5.8E+02 0.013 31.7 14.3 225 573-830 106-336 (1030)
47 PRK03001 M48 family peptidase; 38.4 44 0.00095 35.7 4.8 66 240-316 69-139 (283)
48 PF08325 WLM: WLM domain; Int 37.7 22 0.00047 35.4 2.1 22 295-316 76-97 (186)
49 COG2372 CopC Uncharacterized p 37.0 93 0.002 28.6 5.8 60 47-109 47-110 (127)
50 PRK02870 heat shock protein Ht 36.7 72 0.0016 35.0 6.1 64 241-312 118-184 (336)
51 KOG1991 Nuclear transport rece 36.4 5.2E+02 0.011 32.2 13.3 137 565-703 102-252 (1010)
52 PRK03072 heat shock protein Ht 36.2 67 0.0014 34.5 5.7 69 239-316 71-142 (288)
53 PRK04897 heat shock protein Ht 34.4 48 0.001 35.7 4.3 68 240-316 82-152 (298)
54 PHA02456 zinc metallopeptidase 33.7 28 0.00061 30.7 1.8 14 300-313 78-91 (141)
55 PF13574 Reprolysin_2: Metallo 33.6 27 0.00059 34.3 2.1 13 301-313 111-123 (173)
56 cd04269 ZnMc_adamalysin_II_lik 32.6 1.3E+02 0.0029 29.8 7.0 14 300-313 130-143 (194)
57 PRK09687 putative lyase; Provi 31.0 6.7E+02 0.015 26.6 16.5 94 660-764 143-236 (280)
58 KOG2653 6-phosphogluconate deh 30.4 2.2E+02 0.0048 31.1 8.1 116 568-704 319-449 (487)
59 PF12174 RST: RCD1-SRO-TAF4 (R 29.7 1.3E+02 0.0028 24.7 5.0 46 396-442 12-57 (70)
60 PF12069 DUF3549: Protein of u 29.5 3.3E+02 0.0072 29.8 9.4 54 717-770 213-267 (340)
61 PRK01265 heat shock protein Ht 29.4 89 0.0019 34.1 5.3 66 241-315 86-154 (324)
62 cd04279 ZnMc_MMP_like_1 Zinc-d 29.3 2E+02 0.0043 27.4 7.3 37 219-255 2-41 (156)
63 PF08014 DUF1704: Domain of un 29.2 1.7E+02 0.0038 32.2 7.6 84 242-340 117-213 (349)
64 PLN03218 maturation of RBCL 1; 28.8 1.1E+03 0.025 30.3 15.7 154 660-830 580-743 (1060)
65 PRK10301 hypothetical protein; 28.8 3.1E+02 0.0067 25.3 8.0 26 84-109 84-109 (124)
66 PRK02391 heat shock protein Ht 28.4 1.2E+02 0.0026 32.7 6.0 68 240-316 78-148 (296)
67 PF01431 Peptidase_M13: Peptid 27.6 45 0.00097 33.6 2.5 33 287-319 22-54 (206)
68 PF14524 Wzt_C: Wzt C-terminal 26.3 1.6E+02 0.0035 27.0 6.0 25 83-107 83-107 (142)
69 PF13646 HEAT_2: HEAT repeats; 25.3 90 0.0019 26.0 3.7 62 698-763 13-74 (88)
70 COG3091 SprT Zn-dependent meta 24.2 1E+02 0.0022 29.2 3.9 14 299-312 59-72 (156)
71 KOG2661 Peptidase family M48 [ 24.1 1.9E+02 0.0042 31.1 6.3 19 298-316 272-290 (424)
72 PF04597 Ribophorin_I: Ribopho 23.1 7.4E+02 0.016 28.3 11.5 85 24-108 10-102 (432)
73 PF14675 FANCI_S1: FANCI solen 22.8 3.4E+02 0.0074 27.9 7.8 115 568-687 4-122 (223)
74 PF13934 ELYS: Nuclear pore co 22.3 1.6E+02 0.0034 30.4 5.4 94 696-795 74-170 (226)
75 PRK09687 putative lyase; Provi 22.3 9.5E+02 0.021 25.5 12.9 41 716-757 156-198 (280)
76 COG3590 PepO Predicted metallo 22.1 20 0.00044 41.1 -1.3 56 278-337 461-526 (654)
77 PF15641 Tox-MPTase5: Metallop 21.9 1.6E+02 0.0034 24.9 4.1 19 298-316 61-80 (109)
78 PF09768 Peptidase_M76: Peptid 21.3 3.2E+02 0.007 26.8 6.9 26 297-322 67-92 (173)
79 cd04272 ZnMc_salivary_gland_MP 20.9 2E+02 0.0044 29.3 5.9 13 301-313 145-157 (220)
80 KOG1077 Vesicle coat complex A 20.8 1.3E+03 0.028 27.9 12.4 25 591-615 262-286 (938)
81 PF09836 DUF2063: Uncharacteri 20.6 57 0.0012 28.2 1.5 30 402-431 55-84 (94)
82 PF13402 M60-like: Peptidase M 20.6 1.5E+02 0.0032 32.0 5.0 104 232-346 144-259 (307)
83 PF14734 DUF4469: Domain of un 20.3 3.9E+02 0.0084 23.7 6.6 27 83-109 61-89 (102)
84 PF13205 Big_5: Bacterial Ig-l 20.0 5.7E+02 0.012 22.0 8.4 26 83-108 59-85 (107)
No 1
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-152 Score=1370.56 Aligned_cols=828 Identities=46% Similarity=0.757 Sum_probs=762.5
Q ss_pred ccCCCCCCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeccCCCCccccCeeEEEe
Q 003010 3 EFKGQPRLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELV 82 (858)
Q Consensus 3 ~~~~~~rLp~~v~P~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~ 82 (858)
++...+|||.+++|+||+|+|.|++....|.|++.|.+++.++|+.|+||+.+++|.++.+...................
T Consensus 24 ~~~~~~rLP~~v~P~~Y~l~l~~~l~~~~f~G~v~I~l~v~~~t~~i~Lh~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 103 (882)
T KOG1046|consen 24 KFPNEYRLPTNVVPLHYDLTLKPDLEEFTFTGSVKISLEVSEATRFIVLHAKDLKITSASLVSRPSSGSVQLEVSVEEKE 103 (882)
T ss_pred cccccccCCCCCCCceeEEEEecCCcCCcceeEEEEEEEEecccCEEEEEhhhccceeEEEEecCCCCcccccccccccc
Confidence 34467999999999999999999999999999999999999999999999999999999987532211111011011111
Q ss_pred cCCeEEEEEeCCCcCCc-eEEEEEEEEeeeCCCCcceEEeeecc-CCeeeecccccCCcCCccceeccCCCCCCeeEEEE
Q 003010 83 EADEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL-NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKI 160 (858)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y~~-~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l 160 (858)
.. +.+.+.+++++.+| +|+|+|.|.|.+++++.|||+++|.+ ++.++++++|||||++||++|||||||++||+|.|
T Consensus 104 ~~-~~l~~~~~~~l~~~~~y~L~i~f~g~l~~~~~G~y~s~y~~~~~~~~~~~~Tqfept~AR~~FPCfDeP~~KAtF~I 182 (882)
T KOG1046|consen 104 QE-ETLVFPLNETLLAGSSYTLTIEFTGKLNDSSEGFYRSSYTDSEGSEKSIAATQFEPTDARRAFPCFDEPAFKATFTI 182 (882)
T ss_pred cc-eEEEEEcccccccCCeEEEEEEEeEeecCCcceeeeecccCCCCceEEEEEeccCccchhhcCCCCCcccccCceEE
Confidence 11 67889999999999 79999999999999999999999987 56679999999999999999999999999999999
Q ss_pred EEEeCCCCeEEecCCccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHHH
Q 003010 161 TLDVPSELVALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNV 239 (858)
Q Consensus 161 ~i~~p~~~~a~Sn~~~~~~-~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~ 239 (858)
+|.||++++|+||||+.++ ..++++++++|++||+||||++||+||+|.+.+..+.+|+++|+|++|+...++++|++.
T Consensus 183 tl~hp~~~~aLSNm~v~~~~~~~~~~~~~~F~~Tp~MstYLvAf~V~~f~~~e~~~~~~v~vrv~a~p~~~~~~~~al~~ 262 (882)
T KOG1046|consen 183 TLVHPKGYTALSNMPVIKEEPVDDGWKTTTFEKTPKMSTYLVAFAVGDFVYVETITKSGVPVRVYARPEKINQGQFALEV 262 (882)
T ss_pred EEEecCCceEeecCcccccccccCCeeEEEEEecCCCchhhheeeeeccccceeecCCCceEEEEeChHHhhHHHHHHHH
Confidence 9999999999999999876 455569999999999999999999999999999888889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccc
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (858)
++++|+||+++||+|||+||+|+|++|+|.+|||||||||+|+|..+|+++..++..++++++.+||||+|||||||+||
T Consensus 263 ~~~~L~~~e~~f~i~yPLpK~D~iavPdf~~GAMENwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNLVT 342 (882)
T KOG1046|consen 263 ATKVLEFYEDYFGIPYPLPKLDLVAVPDFSAGAMENWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNLVT 342 (882)
T ss_pred HHHHHHHHHHHhCCCCCCccccEEecCCccccchhcCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccchhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhccCCCCceeeecCCchhhhhccccccccchhHH
Q 003010 320 MEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASV 398 (858)
Q Consensus 320 ~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~pi~~~~~~~~~i~~~f~~i~Y~Kga~v 398 (858)
|+||+|+|||||||+|+++++++..+|+|.++++|+.+.. .++..|++.++||+..++.++.+|++.||.|+|.||++|
T Consensus 343 m~wW~dLWLnEGfAt~~~~~~v~~~~p~~~~~~~~~~~~l~~~l~~D~l~~shpi~~~v~~~~ei~e~fd~i~Y~KGasv 422 (882)
T KOG1046|consen 343 MKWWNDLWLNEGFATYVEYLAVDHLFPEWDIWEQFLLENLERVLSLDALASSHPISVPVESPSEIDEIFDEISYQKGASV 422 (882)
T ss_pred HhhhhhhhhcccHHHHHHHHhhccCCcchhhHHHHHHHHHHHHhhhhcccccCCeeeecCCcchhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999999999999999888777 679999999999999999999999999999999999999
Q ss_pred HHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCCEEEEEEEeecC
Q 003010 399 IRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQFLS 478 (858)
Q Consensus 399 l~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~rf~~ 478 (858)
||||+.++|++.|++||+.||.+|+|+|++++|||++|+...+.||+++|+.|+.|+|||+|+|.+++++++++|+||+.
T Consensus 423 lRML~~~lGe~~F~~gi~~yL~~~~y~na~~~DLw~~l~~~~~~~v~~~M~~Wt~Q~G~Pvv~V~~~~~~~~l~Q~rf~~ 502 (882)
T KOG1046|consen 423 LRMLESLLGEEVFRKGLRSYLKKHQYSNAKTEDLWDALEEGSGLDVSELMDTWTKQMGYPVVTVERNGDSLTLTQERFLS 502 (882)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHhccCCCCchhHHHHHhccCCCCHHHHHhhhhcCCCCceEEEEecCCEEEEehhhhcc
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CCC--CCCCeeEEEEEEEeCccceeeeEEeecceeEEEecccccccccCCCCCCceEEEcCCceeEEEEEcCHHHHHHHH
Q 003010 479 SGS--PGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLG 556 (858)
Q Consensus 479 ~~~--~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~ 556 (858)
... .....|+||++|.+.+.+.....++..++..+.++. .+ +||++|.++.|||||+||+++|+.|+
T Consensus 503 ~~~~~~~~~~w~iPl~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~--~wi~~N~~~~g~yRV~Yd~~~w~~l~ 571 (882)
T KOG1046|consen 503 DPDPSEDNYLWWIPLTYTTSGSGSVPKFWLSSKSTTIKLPE---------SD--QWIKVNLEQTGYYRVNYDDENWALLI 571 (882)
T ss_pred CCCccccCcccceeEEEEcCCCCccceeeecCCCcceecCC---------CC--eEEEEeCCcceEEEEEeCHHHHHHHH
Confidence 764 234599999999887655445677877777777753 33 69999999999999999999999999
Q ss_pred HHHHh-cCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHH
Q 003010 557 YAIEM-KQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFF 635 (858)
Q Consensus 557 ~~l~~-~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 635 (858)
++|.. ..+++.+|++||+|+|+|+++|+++++.+|+++.||.+|++|.||..+...|..+.. +.. .+.+..++.|+
T Consensus 572 ~~l~~~~~~~~~~Ra~li~D~~~la~~~~~~~~~~l~l~~~l~~e~~~~p~~~~~~~l~~~~~-~~~--~~~~~~~~~~~ 648 (882)
T KOG1046|consen 572 EQLKNHESLSVIDRAQLINDAFALARAGRLPYSIALNLISYLKNETDYVPWSAAIRSLYKLHS-LED--TEIYSKFKEFV 648 (882)
T ss_pred HHHhhcCccCHhHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcccccchHHHHHHHHHHHhh-ccc--chHHHHHHHHH
Confidence 99976 689999999999999999999999999999999999999999999999999988888 444 45889999999
Q ss_pred HHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeecccc
Q 003010 636 ISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSA 715 (858)
Q Consensus 636 ~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~ 715 (858)
.+++.+.++++||.....++ ....+|..++..||..|+++|.+.|.++|++|+.+ ++++|+++|.+|||.+ +++
T Consensus 649 ~~l~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~--~~~ip~~lr~~vy~~~---~~~ 722 (882)
T KOG1046|consen 649 KKLILPIFEKLGWSDGADSS-LDNMLRVSVLSFACRFGHEECLKKAVELFRQWLAG--TNPIPPDLREVVYCTA---VQF 722 (882)
T ss_pred HHHHHHHHHHhcCCccccch-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc--CCCCChhhhhhhhhHH---HHh
Confidence 99999999999998754443 77899999999999999999999999999999987 6789999999888765 458
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhc-Cccccccceeeee-eccc--cHHHHHHHHHHH
Q 003010 716 SDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLS-SEVRSQDAVYGLA-VSIE--GRETAWKWLKDN 791 (858)
Q Consensus 716 g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~-~~ir~qd~~~~~~-vs~~--g~~~aw~fl~~n 791 (858)
|+++.|++++++|+++..+.||..+++||+|+++++.++++|++.++ ..++.||...++. ++.+ |..+||+|++.|
T Consensus 723 g~~~~w~~~~~~y~~~~~~~e~~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n 802 (882)
T KOG1046|consen 723 GTEEDWEQLLELYKKETTAAEKRKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDN 802 (882)
T ss_pred cCHhHHHHHHHHHhccccHHHHHHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888 4699999999988 7776 999999999999
Q ss_pred HHHHHHHhCCCcchhHHHHHhccccCCHHHHHHHHhhhc------------------cccccccccccchhHHHHHhh
Q 003010 792 WDHISKTWGSGFLITRFISSIVSPVCCLHLSNYVFRFST------------------LTYVHFKCFPLDPFFVSFCCL 851 (858)
Q Consensus 792 ~~~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~v~~F~~------------------~~~i~w~~~~~~~~~~~~~~~ 851 (858)
|+.+.++|++.+.+.++|..++..|.++.+++++++||+ ..||+|++++++.+.+++++.
T Consensus 803 ~~~l~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~l~~~l~~~ 880 (882)
T KOG1046|consen 803 WKELLNRYGNNFELSRLISFITEPFATEEKLDEVEKFFADIPKTGAERALQQALETVKANIQWVERNEENLTQWLLEA 880 (882)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHh
Confidence 999999999667899999999999999999999999999 899999999999999999875
No 2
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=100.00 E-value=1.1e-124 Score=1132.64 Aligned_cols=769 Identities=22% Similarity=0.315 Sum_probs=646.7
Q ss_pred CceeeEEEEEEEecCCCC--eEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 003010 13 FAVPKRYDIRLTPDLTSC--KFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (858)
Q Consensus 13 ~v~P~~Y~l~l~~d~~~~--~f~G~v~I~~~~~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (858)
.+.+.||+|+|+++.+.. .+.|+++|+|++.++++.|.||+.+++|++|.+++. .......++ ..|
T Consensus 13 ~~~~~~Y~l~l~l~~~~~~~~~~~~~~i~~~~~~~~~~l~LD~~~l~I~~v~vng~----------~~~~~~~~~--~~i 80 (831)
T TIGR02412 13 LITVEHYEIALDLTGADEFFATRCVSTNTVRLSEPGADTFLDLLAAQIESVTLNGI----------LDVAPVYDG--SRI 80 (831)
T ss_pred hccceeEEEEEEccCCccccccceEEEEEEEEcCCCCcEEEEccCCEEEEEEECCc----------ccCccccCC--CEE
Confidence 467999999999876544 558999999999899999999999999999998541 111122222 346
Q ss_pred EeCCCcCCceEEEEEEEEeeeCCCCcceEEeeeccCCeeeecccccCCcCCccceeccCCCCCCeeEEEEEEEeCCCCeE
Q 003010 91 EFAETLPTGMGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSELVA 170 (858)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~l~~~~~G~y~~~y~~~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l~i~~p~~~~a 170 (858)
.++. |.+|.++|+|.|.+.+++.+.|+|+..+..+| +++++|||||.+||+||||||||++||+|+++|++|++|+|
T Consensus 81 ~l~~-l~~g~~~l~i~~~~~~~~~~~Gl~~~~~~~~g--~~~~~Tq~ep~~Ar~~fPcfDeP~~KAtf~ltit~p~~~~v 157 (831)
T TIGR02412 81 PLPG-LLTGENTLRVEATRAYTNTGEGLHRFVDPVDG--EVYLYTQFEPADARRVFAVFDQPDLKANFKFSVKAPEDWTV 157 (831)
T ss_pred EccC-CCCCceEEEEEEEEEecCCCceEEEEEeCCCC--eEEEEECCCCcCceeeEecCCCCCCceeEEEEEEECCCceE
Confidence 6665 77788999999999999999999996554445 37789999999999999999999999999999999999999
Q ss_pred EecCCccceeecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhh--HHHHHHHHHHHHHHHH
Q 003010 171 LSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQ--GKFALNVAVKTLELYK 248 (858)
Q Consensus 171 ~Sn~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~--~~~~l~~~~~~l~~~e 248 (858)
+|||++.+....++.++++|++|||||||++||++|+|...+. ..+|+++++|++|+..+. ++++++.++++|++||
T Consensus 158 ~sNg~~~~~~~~~~~~~~~F~~t~pmstYL~a~~vG~f~~~~~-~~~gvpi~v~~~~~~~~~~~~~~al~~~~~~l~~~e 236 (831)
T TIGR02412 158 ISNSRETDVTPEPADRRWEFPETPKLSTYLTAVAAGPYHSVQD-ESRSYPLGIYARRSLAQYLDADAIFTITRQGLAFFH 236 (831)
T ss_pred ECCCccccccccCCCeEEEecCCCCcccceEEEEEeceEEEee-cCCCEEEEEEECcchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999987765556678899999999999999999999998874 357899999999997654 6789999999999999
Q ss_pred HHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccCccchhHH
Q 003010 249 EYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWL 328 (858)
Q Consensus 249 ~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~d~WL 328 (858)
++||+|||++|+|+|++|+|..|||||||+|+|+|. +++++. .+...++.++.+|+||+|||||||+|||+||+|+||
T Consensus 237 ~~fg~pYP~~k~d~V~vP~f~~GaMEn~Glit~~e~-~l~~~~-~~~~~~~~~~~viaHElAHqWFGnlVT~~wW~dlWL 314 (831)
T TIGR02412 237 RKFGYPYPFKKYDQIFVPEFNAGAMENAGCVTFAEN-FLHRAE-ATRAEKENRAGVILHEMAHMWFGDLVTMRWWNDLWL 314 (831)
T ss_pred HHhCCCCCcccCCEEEcCCCCCCcccccceeeechh-hccCCc-CCHHHHHHHHHHHHHHHHHHHhCCEeccccccchhH
Confidence 999999999999999999999999999999999999 555544 345667789999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhccCCCCceeeecCCchhhhhccccccccchhHHHHHHHHhhC
Q 003010 329 NEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLG 407 (858)
Q Consensus 329 nEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~pi~~~~~~~~~i~~~f~~i~Y~Kga~vl~mL~~~lG 407 (858)
|||||+|++++++++.+|++..+.+|..... .++..|+..++||+..++.++.++...||.++|.||++|||||+..||
T Consensus 315 nEGFAty~e~~~~~~~~~~~~~~~~f~~~~~~~a~~~D~~~~t~Pi~~~~~~~~~~~~~fd~isY~KGa~vL~mL~~~lG 394 (831)
T TIGR02412 315 NESFAEYMGTLASAEATEYTDAWTTFAAQGKQWAYEADQLPTTHPIVADVADLADALSNFDGITYAKGASVLKQLVAWVG 394 (831)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhcccCCCCCccCCCCHHHHHHhccCccchhHHHHHHHHHHHHC
Confidence 9999999999999999999998888876554 678889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEe--CCEEE-EEEEeecCCCCCCC
Q 003010 408 AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVK--EEKLE-LEQSQFLSSGSPGD 484 (858)
Q Consensus 408 ~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~--~~~~~-l~Q~rf~~~~~~~~ 484 (858)
++.|+++||.|+++|+|+|++++|||+++++++|.++++||++|++|+|+|+|+|++. ++.++ +.|.+ .+ ..
T Consensus 395 ee~F~~glr~Yl~~~~~~nat~~Dl~~~l~~~sg~dl~~~~~~W~~~~G~P~l~v~~~~~~~~~~~~~~~~---~~--~~ 469 (831)
T TIGR02412 395 EEAFFAGVNAYFKRHAFGNATLDDLIDSLAKASGRDLSAWSDAWLETAGVNTLTPEITTDGGVVSALYPES---SG--PP 469 (831)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHcCCCCceEEEEEEECCCeEEEEEEec---CC--CC
Confidence 9999999999999999999999999999999999999999999999999999999875 34444 22221 11 12
Q ss_pred CeeEEEEEEEeCccceee-----eEEeecceeEEEecccccccccCCCCCCceEEEcCCceeEEEEEcCHHHHHHHHHHH
Q 003010 485 GQWIVPITLCCGSYDVCK-----NFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYDKDLAARLGYAI 559 (858)
Q Consensus 485 ~~w~iPl~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd~~~w~~l~~~l 559 (858)
..|.|||++....+.... .+++...... ++... ...+. +||++|.++.|||||+||+++|+.|.++|
T Consensus 470 ~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~--~~v~~N~~~~gyyrv~yd~~~~~~l~~~l 541 (831)
T TIGR02412 470 RPHRIAIGLYDLDRDDLRRTTLVPLTISGERTA--VPQLV----GKRAP--ALVLLNDDDLTYAKVRLDPTSFDTVLAAL 541 (831)
T ss_pred CCeeEEEeeeecCCCcceeeeEEEEEEecCcee--ehhhc----CCCCC--CEEEEeCCCcEEEEEECCHHHHHHHHHHh
Confidence 469999998654332111 1334332222 22110 01133 79999999999999999999999999998
Q ss_pred HhcCCChhhHHHHHHHHHHHHHhccCCHHHHHHHH-HhcccCCcHHHHHHHHHHHH-HHHHHHhccChhHHHHHHHHHHH
Q 003010 560 EMKQLSETDRFGILDDHFALCMARQQTLTSLLTLM-ASYSEETEYTVLSNLITISY-KIGRIAADARPELLDYLKQFFIS 637 (858)
Q Consensus 560 ~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~-~~l~~E~~~~~w~~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~ 637 (858)
.. ..++.+|++|++|+|+++++|.++++.+|+++ .||++|+++.||..++..+. .+...+.. ++.+..++.|+..
T Consensus 542 ~~-~~~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~ 618 (831)
T TIGR02412 542 SK-LPDPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAP--IADRPALLAVAAL 618 (831)
T ss_pred hh-CCChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 53 33799999999999999999999999999955 89999999999999999999 88887744 4578889999988
Q ss_pred HhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCC
Q 003010 638 LFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASD 717 (858)
Q Consensus 638 l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~ 717 (858)
++.+.... ++++.+..++. +..++|..|+++|++.++++|+.|+++ ..||||+|..|||+++. ++
T Consensus 619 ~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~dlr~~v~~~~~~----~~ 683 (831)
T TIGR02412 619 ACRSLRRA-------MESGPDFQLRW-LRALALTATDPDSLRRLLSLLDGKIKG---LALDPDLRWRIIARLAA----LG 683 (831)
T ss_pred HHHHHHhc-------cCCCccHHHHH-HHHHHHhcCCHHHHHHHHHHHhCCCCC---cccCHhHHHHHHHHHHh----cC
Confidence 88764322 23333333333 555799999999999999999998754 36999999998885443 57
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-ccccccceeeee-eccc-cHHHHHHHHHHHHHH
Q 003010 718 RSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-VSIE-GRETAWKWLKDNWDH 794 (858)
Q Consensus 718 ~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~ir~qd~~~~~~-vs~~-g~~~aw~fl~~n~~~ 794 (858)
..+|+.++++|++++++.+|..++.||||++||+++++.+..++.+ .++.||...++. ++.. +++++|+|+++||+.
T Consensus 684 ~~~~~~l~~~~~~~~~~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (831)
T TIGR02412 684 FIDADDIAAELERDNTASGEEHAAAARAARPDAAAKREAWQKLVTTDALPNSKQRAIIEGFWQPEQALLLAAYAERYFAN 763 (831)
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999777776665 589999988888 7654 999999999999999
Q ss_pred HHHHhCC-CcchhHHHHHhcc--ccCCHHHHHHHHhhhc
Q 003010 795 ISKTWGS-GFLITRFISSIVS--PVCCLHLSNYVFRFST 830 (858)
Q Consensus 795 i~~~~~~-~~~l~~~i~~~~~--~~~t~~~~~~v~~F~~ 830 (858)
|.++++. +..+.+.+...+. .+++++.++++++||+
T Consensus 764 l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 802 (831)
T TIGR02412 764 LADIWKRRGPAIAQAISRGLFPATAVNYDTLATADKWLR 802 (831)
T ss_pred HHHHHHhCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 9999975 4555655555554 8999999999999995
No 3
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-92 Score=845.64 Aligned_cols=792 Identities=30% Similarity=0.463 Sum_probs=637.2
Q ss_pred CCCCCcee-eE--EEEEEEecCC--CCeEEEEEEEEEEE--EcCCCEEEEEeCCceEeEEEEEeccCCCCccccCeeEEE
Q 003010 9 RLPKFAVP-KR--YDIRLTPDLT--SCKFGGSVAIDVDV--VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVEL 81 (858)
Q Consensus 9 rLp~~v~P-~~--Y~l~l~~d~~--~~~f~G~v~I~~~~--~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~ 81 (858)
.++..+.| .+ |++.|+++.. +.+|+|+++|++.. ..+...|+||+.+|+|.++.+++.. ... .+.+
T Consensus 12 ~~~~~~~~~~~~i~~~~Ld~~~~~~~~~~~g~~~i~~~~~~~~~~~~lvld~~~l~i~~v~idg~~------~~~-~~~~ 84 (859)
T COG0308 12 ALSLDYRPPEYAIYDIDLDLDLDPEKTTFEGSVTIRLDAGWRSGADPLVLDAVGLEIRSVKIDGKA------LTA-WYRL 84 (859)
T ss_pred cccccCCCccccccceEEEeeecCCccEEEEEEEEEEeccccCCCCeEEEeccccEEEEEEEcCcc------ccc-cccc
Confidence 44555555 77 7777766554 48999999999987 3444459999999999999997631 111 2333
Q ss_pred ecCCeEEEEEeCCC--c---CCceEEEEEEEEeeeC-CCCcceEEeeeccCCeeeecccccCCcCCccceeccCCCCCCe
Q 003010 82 VEADEILVLEFAET--L---PTGMGVLAIGFEGVLN-DKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACK 155 (858)
Q Consensus 82 ~~~~~~l~i~l~~~--L---~~g~~~l~i~y~g~l~-~~~~G~y~~~y~~~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~k 155 (858)
+. +.+.+....+ + .++.+.+.+.+.+... +.+.|+|++.+.. ..+++||||+.+||+||||+|+|+.|
T Consensus 85 ~~--~~~~i~~~~~~~~~~~~~~~l~i~~~~~~~~s~~~~~Gly~~~~~~----~~~~~TQ~Ea~~aR~~fpc~D~P~~k 158 (859)
T COG0308 85 DG--DALTITVAPPIPERSERPFTLAITYEFTGPVSNDTLEGLYRSGYGG----KPYLITQCEAEGARRIFPCIDEPDVK 158 (859)
T ss_pred cC--ccceeeeccccccccCCCccEEEEEEecccccCccccceeecCCCC----CeeEEeecccCCCceeeecCCCCCCc
Confidence 33 3333433222 2 2347788888888776 7789999987643 67889999999999999999999999
Q ss_pred eEEEEEEEeCCCCeEEecCCccceee-cCCeEEEEEEeCCCCcceEEEEEEeeeeEeeeccc---CCeEEEEEEcCCchh
Q 003010 156 ATFKITLDVPSELVALSNMPVIDEKV-DGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTS---DGIKVRVYCQVGKAN 231 (858)
Q Consensus 156 a~f~l~i~~p~~~~a~Sn~~~~~~~~-~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~---~g~~v~v~~~~~~~~ 231 (858)
|+|+++|+.++++.++|||+...... .+++++++|..++||||||+|+++|+|.+.+.... +++++++|++++...
T Consensus 159 atf~~~i~~~k~~~~iSN~~~~~~~~~~~g~~~~~f~~~~~mptYL~al~~G~~~~~~~~~~~~~~~v~l~iy~~~g~~~ 238 (859)
T COG0308 159 ATFTLTIRADKGPKLISNGNLIDGGTLVDGRKIVKFEDTPPMPTYLFALVAGDLEVFRDKFDTRSRDVPLEIYVPPGVLD 238 (859)
T ss_pred ceeEEEEEecCcceeeecCCccccccccCCcEEEEEcCCCCcchHhhheeeecceeeeeeeccCCCCeeEEEEecCcchh
Confidence 99999999999999999999987644 35689999999999999999999999988875543 479999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHH
Q 003010 232 QGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAH 311 (858)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaH 311 (858)
.++++++.+.+++++||++||+|||+++ ++|++|+|++|||||||+++|++..+|.+++.++....++++.+|+||+||
T Consensus 239 ~a~~~~~~~~~~~~~~e~~fg~~y~l~~-~~V~v~~f~~GaMEN~Gl~tf~~~~ll~~~~~at~~~~~~~~~viaHElaH 317 (859)
T COG0308 239 RAKYALDETKRSIEFYEEYFGLPYALPI-DIVAVPDFSAGAMENWGLVTFREKYLLADPETATDSDYENVEEVIAHELAH 317 (859)
T ss_pred hhhhhHHHHHHHhhhHHHhcCCCCCCcc-cEEeccCCCCccccccceeEEeeeEEeeCcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 999999999999999999999999999998888888889999999999999
Q ss_pred HHhcCccccCccchhHHhhhHHHHHHHHHHhhhCc-chhHHHHHHHHHHH-HHhhhccCCCCceeeecCCchhhhhcccc
Q 003010 312 QWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTE-GLRLDGLAESHPIEVEVNHTGEIDEIFDA 389 (858)
Q Consensus 312 qWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~D~~~~~~pi~~~~~~~~~i~~~f~~ 389 (858)
|||||+|||+||+++|||||||+|+++...+..+| .|..+..+...... ++..|+...+||+...+.+|.+++..||.
T Consensus 318 qWfGnlVT~~~W~~lWLnEgfat~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~hPi~~~~~~~~ei~~~fD~ 397 (859)
T COG0308 318 QWFGNLVTMKWWDDLWLNEGFATFREVLWSEDLGGRAWKRWEDFRTLRTSIALAEDSLPSSHPIRVDVYDPKEINDFFDA 397 (859)
T ss_pred hcccceeeccCHHHHHHhhhhHHHHHHHHHHHhcchHHHHHHHHHHHhhhHHHhhccccccCCcccCCCCccchhhhcch
Confidence 99999999999999999999999999999999999 88888888776664 78899999999999999999999999999
Q ss_pred ccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeCC-E
Q 003010 390 ISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKEE-K 468 (858)
Q Consensus 390 i~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~~-~ 468 (858)
++|.||++|+|||+..+|++.|++||+.|+++|++++++++|||+++++++|+|+..+|..|++|+|+|++.|...++ .
T Consensus 398 i~Y~KGs~vlrml~~~lG~e~F~kgl~~yf~~h~~~~~~~~Dl~~a~~~~sg~dl~~~~~~w~~q~G~P~l~v~~~~~~~ 477 (859)
T COG0308 398 IVYEKGASVLRMLETLLGEEAFRKGLSLYFKRHAGGNATTMDLWKALEDASGKDLSAFFESWLSQAGYPVLTVSVRYDDF 477 (859)
T ss_pred hhcchhHHHHHHHHHHHCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHhCCCCCceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998887 7
Q ss_pred EEEEEEeecCCCCCCCCeeEEEEEEEeCccceeeeEEeecceeEEEecccccccccCCCCCCceEEEcCCceeEEEEEcC
Q 003010 469 LELEQSQFLSSGSPGDGQWIVPITLCCGSYDVCKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTGFYRVKYD 548 (858)
Q Consensus 469 ~~l~Q~rf~~~~~~~~~~w~iPl~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~gyyRV~Yd 548 (858)
++++|+||...+......|.||+.+............+.+...++.+.... ..+- .-+++|....|+|++.|+
T Consensus 478 ~~l~~~q~~~~~~~~~~~~~iPl~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~y~ 550 (859)
T COG0308 478 FKLTQKQFTPPGQEEKRPWPIPLAIKLLDGGGVKVLLLTEGEQTVTFELVG-----IPPF--PSLKVNDSAPVFYRVDYS 550 (859)
T ss_pred EEEEEEEeccCCCccCceeeeccEEEecCCCCceeeeeeccceEEEEeccc-----CCcc--ceeeccCCccceEEEecC
Confidence 999999999877334458999999987654422334455555566664321 1111 368999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhcccCCcHHHH-HHHHH-HHHHHHHHHhccChh
Q 003010 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVL-SNLIT-ISYKIGRIAADARPE 626 (858)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w-~~~~~-~l~~l~~~~~~~~~~ 626 (858)
.+.|..++... ..+...+|+.++.|..++..+|..+...+...+....++.....+ ..++. .+..|..... .+
T Consensus 551 ~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 625 (859)
T COG0308 551 DQSLSKLLQHD--PRLEAAQRLALVADRRALTAAGKGSAEDKLALVSRAFNAELLYVSLEQAFKSLLLALPSFAD---LE 625 (859)
T ss_pred HHHHHHHHhhh--hhhhHHHHHhhhhhHHHHHHhcccchhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchh---hh
Confidence 99998886653 378899999999999999999999999999876665544444444 33333 2222222111 11
Q ss_pred HHHHHHHHHHHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhh
Q 003010 627 LLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAY 706 (858)
Q Consensus 627 ~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy 706 (858)
..+.......+...+.++++....++.. .......+ +.++...+..+.+.+..+|..+-.. ...+++++|..+-
T Consensus 626 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 699 (859)
T COG0308 626 --KFIDPDAIDQLRDALVRLGAEAVADDLL-ALYHIGAL-SQSLYEEDASLAALRALRNACLERL--EKQEDPELRSLVV 699 (859)
T ss_pred --hhcCHHHHHHHHHHHHHHHHHhhcchHH-HHHHhhhh-ccccccccHHHHHHHHHHHHHHhhc--ccccChhHHHHHH
Confidence 3455566677777777777765433322 22222222 6677788899999999999887433 3457899998765
Q ss_pred heeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-ccccccceeeee-e-c-cccHH
Q 003010 707 VAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDAVYGLA-V-S-IEGRE 782 (858)
Q Consensus 707 ~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~ir~qd~~~~~~-v-s-~~g~~ 782 (858)
..+.. +.+..+.+..+.+.|..+.....+..+..+.+....+..+.+.|..+..+ .+..|++..... . . .++++
T Consensus 700 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 777 (859)
T COG0308 700 KAYAA--AGNMTDALKALLEAYQSPTRAEALRDFADAFGRFPLVMDKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNE 777 (859)
T ss_pred HHHHH--hcChHHHHHHHHHhcccCChHHHHHHHHHHhcccccHHHHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchh
Confidence 55543 23334468999999999988899999999999999999999999998876 578888877766 3 3 33999
Q ss_pred HHHHHHHHHHH---HHHHHhCCCcchhHHHHHhccccCCHHHHHHHHhhhccccc
Q 003010 783 TAWKWLKDNWD---HISKTWGSGFLITRFISSIVSPVCCLHLSNYVFRFSTLTYV 834 (858)
Q Consensus 783 ~aw~fl~~n~~---~i~~~~~~~~~l~~~i~~~~~~~~t~~~~~~v~~F~~~~~i 834 (858)
+.|.|...||+ .+....+++......+-.....++.+..+.+++.|+.....
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~ 832 (859)
T COG0308 778 ARWLYGTFAFENPALLHALDGSGYRFLGVIVLELNIFNPQLALRKIEEFLELKKL 832 (859)
T ss_pred hHHHHHHHhhhchhhhhhhccccccccceEEEEeeccchhhHHHHHHHHhhhhcc
Confidence 99999999998 55666665543333233345778889999999999963333
No 4
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=100.00 E-value=9.3e-84 Score=764.76 Aligned_cols=708 Identities=21% Similarity=0.274 Sum_probs=504.7
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeccCCCCccccCeeEEEecCCeEEEE
Q 003010 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILVL 90 (858)
Q Consensus 11 p~~v~P~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 90 (858)
|..+...||+|+|+++++...++|+++|+++..++...|+||+.+|+|.++.+++. .+. ...+..+++.++|
T Consensus 4 ~~~~~v~~~~L~l~l~~~~~~v~g~~~i~~~~~~~~~~l~Ld~~~L~I~sV~v~g~------~~~--~~~~~~~~~~L~I 75 (863)
T TIGR02414 4 PPPFLIEKTHLDFDLHEEETVVRARLTVRRNPDGNGAPLVLDGEELKLLSIAIDGK------PLA--AGDYQLDDETLTI 75 (863)
T ss_pred CCCceEEEEEEEEEEeCCCeEEEEEEEEEEecCCCCCcEEEEecCCEEEEEEECCE------ecC--cceEEEcCCEEEE
Confidence 55688999999999999999999999999998777788999999999999998542 111 1235555677888
Q ss_pred EeCCCcCCceEEEEEEEEee--eCCCCcceEEeeeccCCeeeecccccCCcCCccceeccCCCCCCeeEEEEEEEeCCC-
Q 003010 91 EFAETLPTGMGVLAIGFEGV--LNDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE- 167 (858)
Q Consensus 91 ~l~~~L~~g~~~l~i~y~g~--l~~~~~G~y~~~y~~~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l~i~~p~~- 167 (858)
.. + ++.++|+|.|.+. .++.+.|+|++.| +++|||||.+||++|||||+|++||+|+++|++|++
T Consensus 76 ~~---~-~~~~~l~i~~~~~p~~n~~l~GlY~s~~--------~~~TQ~Ep~gaR~ifpc~DeP~~kAtf~vtI~~p~~~ 143 (863)
T TIGR02414 76 AS---V-PESFTLEIETEIHPEENTSLEGLYKSGG--------NFCTQCEAEGFRRITYFPDRPDVMSRYTVTITADKKK 143 (863)
T ss_pred ee---C-CccEEEEEEEEeecccCCCCeEEEEeCC--------eEEEEecCCCCCcCCCCCCCCCCceEEEEEEEECCCc
Confidence 74 2 3579999998654 4556889999753 568999999999999999999999999999999996
Q ss_pred C-eEEecCCccce-eecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeec----ccCCeEEEEEEcCCchhhHHHHHHHHH
Q 003010 168 L-VALSNMPVIDE-KVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVAV 241 (858)
Q Consensus 168 ~-~a~Sn~~~~~~-~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~~ 241 (858)
| +++|||+++.. ...+++++++|+.++|||+||+||++|+|++++.. ..+++++++|++|+..+.++++++.++
T Consensus 144 y~v~lSNg~~~~~~~~~~g~~~~~f~~t~pmptYLfA~vaGdf~~~~~~~~t~sg~~v~l~iy~~p~~~~~~~~al~~~~ 223 (863)
T TIGR02414 144 YPVLLSNGNKIASGELPDGRHWAEWEDPFPKPSYLFALVAGDLDVLEDTFTTKSGREVALRVYVEEGNKDKCDHAMESLK 223 (863)
T ss_pred ceEEEeCCccccceecCCCeEEEEEeCCCCcChhHheEEEeCCEEEEEEeeccCCCceEEEEEEccCcHHHHHHHHHHHH
Confidence 6 66899987765 44577889999999999999999999999988742 234689999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccC
Q 003010 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTME 321 (858)
Q Consensus 242 ~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~ 321 (858)
++|++||++||+|||++|+++|++|+|..||||||||++|++..+|.++...+...++.+..+||||+|||||||+|||+
T Consensus 224 ~~L~~~E~~fG~pYPl~k~diVavpdf~~GaMEN~GLi~f~e~~lL~~~~~~td~~~~~i~~VIaHElaHqWfGNlVT~~ 303 (863)
T TIGR02414 224 KAMKWDEEVFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTCR 303 (863)
T ss_pred HHHHHHHHHhCCCCChhhccEEecCCCCCccccccceeccccceEEeCCCCCCHHHHHHHHHHHHHHHHHHHhcceeeec
Confidence 99999999999999999999999999999999999999999999999988767777888999999999999999999999
Q ss_pred ccchhHHhhhHHHHHHHHHHhhhCcchh--HHHHHHHHHHHHHhhhccCCCCceeeecCCchhhhhccccccccchhHHH
Q 003010 322 WWTHLWLNEGFATWVSYLAADSLFPEWK--IWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (858)
Q Consensus 322 ~w~d~WLnEGfA~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~D~~~~~~pi~~~~~~~~~i~~~f~~i~Y~Kga~vl 399 (858)
||+++|||||||+|++..+.....+... +....... ..++..|+...+||+.. .+..+++..|+.++|.||++||
T Consensus 304 ~W~~LWLnEGfAty~e~~~~~~~~~~~~~~~~~~~~lr-~~~f~~D~~p~~~Pi~~--~~~~~i~~~y~~i~Y~KGA~vL 380 (863)
T TIGR02414 304 DWFQLSLKEGLTVFRDQEFSADMTSRAVKRIEDVRLLR-AHQFPEDAGPMAHPVRP--ESYVEINNFYTATVYEKGAEVI 380 (863)
T ss_pred chhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhcccccccCCCCCC--cchhhHHhccchHHhHHHHHHH
Confidence 9999999999999999766555443311 11111000 12355677778888864 3456778899999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----C--EEEEEE
Q 003010 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (858)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~--~~~l~Q 473 (858)
|||+..||++.|++||+.|+++|++++++++|||+++++++|.|+.+|+ +|+.|+|+|+|+|+++. + +++++|
T Consensus 381 rML~~~LGee~F~~gLr~Yl~r~~~~~at~~Df~~ale~asg~dL~~f~-~W~~q~G~P~v~v~~~yd~~~~~~~lt~~Q 459 (863)
T TIGR02414 381 RMLHTLLGEEGFRKGMDLYFSRHDGQAVTCEDFVAAMEDASGRDLNQFR-RWYSQAGTPVLEVKENYDAAKKTYTLTVRQ 459 (863)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCceeEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999985 89999999999999863 2 466666
Q ss_pred EeecCCCCCCCCeeEEEEEEEe--Cccce-----------eeeEEeecceeEEEecccccccccCCCCCCceEEEcCCce
Q 003010 474 SQFLSSGSPGDGQWIVPITLCC--GSYDV-----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (858)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~--~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (858)
.+....+......|.|||.+.. .++.. ...+.++++++++.++++.. . ..+-++.+..
T Consensus 460 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~~l~l~~~~~~f~f~~~~~------~---p~~sl~r~fs 530 (863)
T TIGR02414 460 STPPTPGQTEKKPLHIPIAVGLLGPNGRKLMLSLDGERDTTRVLELTEAEQTFVFEGIAE------K---PVPSLLRGFS 530 (863)
T ss_pred eCCCCCCCCcCCceEEEEEEEEEeCCCCEeeecccCCCCcceEEEEccCEEEEEEcCCCC------C---CeeeecCCCC
Confidence 5432223333458999999854 22221 12356788888898876421 2 3477888888
Q ss_pred eEEEEEcCHHHHHHHHHHHHhcCCChhhHH---HHHHHHHH--H---HHhcc-CC-HHHHHHHHHhcccC--CcHHHHHH
Q 003010 541 GFYRVKYDKDLAARLGYAIEMKQLSETDRF---GILDDHFA--L---CMARQ-QT-LTSLLTLMASYSEE--TEYTVLSN 608 (858)
Q Consensus 541 gyyRV~Yd~~~w~~l~~~l~~~~i~~~~Ra---~li~D~~~--l---a~~g~-l~-~~~~l~l~~~l~~E--~~~~~w~~ 608 (858)
.+-++.|+... +.|...+..+ -...+|. |-+..-.- + ...|. +. -..+++.++.+-.+ .+...-..
T Consensus 531 apv~l~~~~~~-~~l~~l~~~d-~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~a~ 608 (863)
T TIGR02414 531 APVNLEYPYSD-EDLLLLLAHD-SDPFNRWEAGQRLARRVILANIARAQGGEELPVDPAFIDALGKLLNDPHLDAAFKAL 608 (863)
T ss_pred ceEEEeCCCCH-HHHHHHHhhC-CChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 88888776432 2222222221 1122232 21111101 1 11232 21 23455555553322 24333333
Q ss_pred HHHH--HHHHHHHHhccChh--------HHHHHHHHHHHHhHHHHHhcCCcc---CCCCCHHHHHHHHHHHHHHHhcCCH
Q 003010 609 LITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDS---KPGESHLDALLRGEIFTALALLGHK 675 (858)
Q Consensus 609 ~~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~---~~~~~~~~~~lr~~i~~~ac~~g~~ 675 (858)
++.. ...|...+..-+|+ ....+..-++..+..+|+++.-.. ...+....+.||..+|++.+..+.+
T Consensus 609 ~l~lp~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~ 688 (863)
T TIGR02414 609 LLALPSEAYLAELMENIDPDALHAAREFLRAAIARQLADDLLRLYDALQENGPYSVDPAAAGRRALRNACLSYLSAADDA 688 (863)
T ss_pred HhcCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCCh
Confidence 3221 12232222111122 222233334444555666653111 1122334589999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHH
Q 003010 676 ETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLE 755 (858)
Q Consensus 676 ~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~ 755 (858)
+..+.|.+.|++-- + ---|-+.+.+++..-....++..+..+++++.....-+|--.+.|.+ ..+..+.+
T Consensus 689 ~~~~~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~--~~~~~~~~ 758 (863)
T TIGR02414 689 EIRNLALEQFKSAD---N-----MTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQATS--PRPDTLER 758 (863)
T ss_pred hHHHHHHHHHHhCC---C-----HHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHhCC--CcccHHHH
Confidence 99999999887531 1 11233333333221001112335566666666666666766666644 34455555
Q ss_pred HHHHHhcC
Q 003010 756 VLNFLLSS 763 (858)
Q Consensus 756 ~L~~~l~~ 763 (858)
+-.+.-++
T Consensus 759 v~~l~~h~ 766 (863)
T TIGR02414 759 VKALLQHP 766 (863)
T ss_pred HHHHhcCC
Confidence 55554443
No 5
>PRK14015 pepN aminopeptidase N; Provisional
Probab=100.00 E-value=7.5e-83 Score=759.53 Aligned_cols=710 Identities=22% Similarity=0.295 Sum_probs=500.7
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEE-EcCCCEEEEEeCCceEeEEEEEeccCCCCccccCeeEEEecCCeEEE
Q 003010 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEILV 89 (858)
Q Consensus 11 p~~v~P~~Y~l~l~~d~~~~~f~G~v~I~~~~-~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (858)
|..+...||+|+|+++++...++|+++|+... .++.+.|+||+.+|+|.+|.+++. .+.+. .+..+++.|+
T Consensus 16 ~~~~~V~h~dL~l~ld~~~~~v~g~~~i~~~~~~~~~~~l~LD~~~L~I~sV~v~G~------~~~~~--~~~~~~~~L~ 87 (875)
T PRK14015 16 PPDYLIDTVDLDFDLDPDKTRVTARLQVRRNPDAAHSAPLVLDGEDLELLSLALDGQ------PLAPS--AYELDEEGLT 87 (875)
T ss_pred CCCeEEEEEEEEEEEcCCCcEEEEEEEEEEccCCCCCceEEEEcCCCEEEEEEECCE------EcCcc--ceEEcCCEEE
Confidence 55588899999999999999999999999876 466789999999999999998652 11111 3444567888
Q ss_pred EEeCCCcCCceEEEEEEEEeee--CCCCcceEEeeeccCCeeeecccccCCcCCccceeccCCCCCCeeEEEEEEEeCC-
Q 003010 90 LEFAETLPTGMGVLAIGFEGVL--NDKMKGFYRSSYELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPS- 166 (858)
Q Consensus 90 i~l~~~L~~g~~~l~i~y~g~l--~~~~~G~y~~~y~~~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l~i~~p~- 166 (858)
|.. + ++.++|+|.|++.. +..+.|+|++.+ +++|||||.+||+||||+|+|+.||+|+++|++|+
T Consensus 88 I~~---l-~~~~~l~I~y~~~P~~n~~l~Gly~s~~--------~~~TQ~Ep~gAR~~fPc~D~P~~KAtf~itI~~p~~ 155 (875)
T PRK14015 88 IEN---L-PDRFTLEIETEIDPEANTALEGLYRSGG--------MFCTQCEAEGFRRITYFLDRPDVLARYTVRIEADKA 155 (875)
T ss_pred Eec---C-CccEEEEEEEEEecCCCCCceeeEEECC--------EEEEeccccCcCCcccCCCCCCCCeeEEEEEEEccc
Confidence 872 3 34689999998754 345789998642 56899999999999999999999999999999999
Q ss_pred CC-eEEecCCcccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeec----ccCCeEEEEEEcCCchhhHHHHHHHH
Q 003010 167 EL-VALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDH----TSDGIKVRVYCQVGKANQGKFALNVA 240 (858)
Q Consensus 167 ~~-~a~Sn~~~~~~~-~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~----~~~g~~v~v~~~~~~~~~~~~~l~~~ 240 (858)
.| +++|||+++... ..+++++++|..++|||+||+||++|+|..++.. ..+++++++|++|+..+.++++++.+
T Consensus 156 ~~~~~lSNG~l~~~~~~~~g~~~~~w~~~~PmpsYL~Al~aGdf~~~~d~~~~~~g~~vpl~iy~~p~~~~~~~~al~~~ 235 (875)
T PRK14015 156 KYPVLLSNGNLVESGELPDGRHWATWEDPFPKPSYLFALVAGDLDVLEDTFTTRSGREVALEIYVEPGNLDKCDHAMDSL 235 (875)
T ss_pred cCeEEecCCccccceeccCCeEEEEEEeCCCcccceEEEEEeCCEEEEEEeeccCCCeEEEEEEEeCCcHHHHHHHHHHH
Confidence 48 689999988774 4677899999999999999999999999987742 22459999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCcccc
Q 003010 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (858)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (858)
+++|++||++||.|||++|+++|++|+|..||||||||++|++..+|.++...+...++.+..+||||+|||||||+|||
T Consensus 236 ~~~L~~~E~~FG~pYP~~k~diVavp~f~~GaMEN~Gl~~f~~~~lL~~~~~~t~~~~~~i~~vIaHElaHqWFGNlVT~ 315 (875)
T PRK14015 236 KKSMKWDEERFGLEYDLDIFMIVAVDDFNMGAMENKGLNIFNSKYVLADPETATDADYERIESVIAHEYFHNWTGNRVTC 315 (875)
T ss_pred HHHHHHHHHHhCCCCChhhhCEEeCCCCCCcccccccccccccceEecCcccCCHHHHHHHHHHHHHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999988766666777899999999999999999999
Q ss_pred CccchhHHhhhHHHHHHHHHHhhhCc-chhHHHHHHHHHHHHHhhhccCCCCceeeecCCchhhhhccccccccchhHHH
Q 003010 321 EWWTHLWLNEGFATWVSYLAADSLFP-EWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKGASVI 399 (858)
Q Consensus 321 ~~w~d~WLnEGfA~y~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~pi~~~~~~~~~i~~~f~~i~Y~Kga~vl 399 (858)
+||+|+|||||||+|++..+.....+ .+............++..|+...+||+... +..+++..|+.++|.||++||
T Consensus 316 ~~W~dLWLnEGFAty~e~~~~~~~~~~~~~~~~~~~~l~~~~~~~D~~~~a~pi~p~--~~~~i~~~f~~~~Y~KGA~vL 393 (875)
T PRK14015 316 RDWFQLSLKEGLTVFRDQEFSADLGSRAVKRIEDVRVLRAAQFAEDAGPMAHPVRPD--SYIEINNFYTATVYEKGAEVI 393 (875)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccccccCCCCCCc--chhhHHhcccchhhhHHHHHH
Confidence 99999999999999998776555432 211111100000123445776777887542 345778899999999999999
Q ss_pred HHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHHhhcCCCcceEEEEEeC----C--EEEEEE
Q 003010 400 RMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNSWTKQKGYPVISVKVKE----E--KLELEQ 473 (858)
Q Consensus 400 ~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~W~~~~G~P~l~v~~~~----~--~~~l~Q 473 (858)
|||+..||++.|+++|+.|+++|++++++++|||+++++++|.|+.+|+ +|++|+|+|+|+|+++. + +++++|
T Consensus 394 rMLr~~lGde~F~~gLr~Yl~~~~~~~at~~Df~~ale~asg~DL~~f~-~W~~q~G~P~l~v~~~~d~~~~~~~ltl~Q 472 (875)
T PRK14015 394 RMLHTLLGEEGFRKGMDLYFERHDGQAVTCEDFVAAMEDASGRDLSQFR-RWYSQAGTPRVTVSDEYDAAAGTYTLTLSQ 472 (875)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhCCCHHHHH-HHHcCCCCCeEEEEEEEcCCCCEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999986 89999999999999863 3 456666
Q ss_pred EeecCCCCCCCCeeEEEEEEEe--Cccce----------eeeEEeecceeEEEecccccccccCCCCCCceEEEcCCcee
Q 003010 474 SQFLSSGSPGDGQWIVPITLCC--GSYDV----------CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQTG 541 (858)
Q Consensus 474 ~rf~~~~~~~~~~w~iPl~~~~--~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~g 541 (858)
.+....+......|.|||.+.. .++.. ...+.++.+++++.++++. .. ..+.++.+...
T Consensus 473 ~~~~~~~~~~~~~~~iPl~i~l~~~~G~~~~~~~~~~~~~~~l~l~~~~q~f~f~~~~------~~---p~~s~~r~fsa 543 (875)
T PRK14015 473 STPPTPGQPEKQPLHIPVAIGLLDPDGKELPLQLEGEPVERVLELTEAEQTFTFENVA------ER---PVPSLLRGFSA 543 (875)
T ss_pred eCCCCCCCCCCceEEEEEEEEEEcCCCceeeccccCCccceEEEEcCCeeEEEEcCCC------CC---ceEEecCCCCC
Confidence 6433223334458999999854 22221 2246778888899887532 12 34778888888
Q ss_pred EEEEEcCHHHHHHHHHHHHhc--CCChhhHHHHHHHHHH--HHHh-cc-CC-HHHHHHHHHhcc-c-CCcHHHHHHHHHH
Q 003010 542 FYRVKYDKDLAARLGYAIEMK--QLSETDRFGILDDHFA--LCMA-RQ-QT-LTSLLTLMASYS-E-ETEYTVLSNLITI 612 (858)
Q Consensus 542 yyRV~Yd~~~w~~l~~~l~~~--~i~~~~Ra~li~D~~~--la~~-g~-l~-~~~~l~l~~~l~-~-E~~~~~w~~~~~~ 612 (858)
+-++.|+... +.|.-.+..+ .++.-+-+|-+..-.- ++.. |. +. -..+++.++.+- . +.+...-..++..
T Consensus 544 pv~~~~~~~~-~~l~~l~~~d~d~~~r~~a~q~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~l~l 622 (875)
T PRK14015 544 PVKLEYDYSD-EDLLFLMAHDSDPFNRWEAGQRLATRLLLANVARHGQPLSLDEALIDAFRAVLLDESLDPAFAAELLTL 622 (875)
T ss_pred cEEEeCCCCH-HHHHHHHhhCCChhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcCCCCCHHHHHHHccC
Confidence 8888877322 2233323221 2222222222211111 1111 22 21 234555544432 2 3344333333322
Q ss_pred H--HHHHHHHhccChh--------HHHHHHHHHHHHhHHHHHhcCCccC---CCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 003010 613 S--YKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLGHKETLN 679 (858)
Q Consensus 613 l--~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lr~~i~~~ac~~g~~~c~~ 679 (858)
- ..|...+..-+++ ....+..-+...+..+|+++.-... ..+....+.||..++.+.+..+.++..+
T Consensus 623 p~~~~l~~~~~~~d~~~i~~~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~n~~l~~l~~~~~~~~~~ 702 (875)
T PRK14015 623 PSEAELAEQMEVIDPDAIHAAREALRRALATALKDELLALYEALQTDGPYSPDAEAAGRRALRNVCLSYLAAADDEEAAE 702 (875)
T ss_pred CCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 1 2222222111121 1222233333444555555421110 1223445899999999999999998888
Q ss_pred HHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003010 680 EASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNF 759 (858)
Q Consensus 680 ~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~ 759 (858)
.|.+.|++-- + ---|-+.+.++...-....++..+..+++++.....-+|--.+.|.+-..| .+.++-.+
T Consensus 703 ~~~~~~~~a~---~-----mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~~--~~~~v~~l 772 (875)
T PRK14015 703 LAEAQFDQAD---N-----MTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATSPAPD--TLERVRAL 772 (875)
T ss_pred HHHHHHhhCC---C-----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCcC--HHHHHHHH
Confidence 8888887431 1 112332233332210011123455566666666666677777777554444 44554444
Q ss_pred HhcC
Q 003010 760 LLSS 763 (858)
Q Consensus 760 ~l~~ 763 (858)
.-++
T Consensus 773 ~~hp 776 (875)
T PRK14015 773 MQHP 776 (875)
T ss_pred hcCC
Confidence 3333
No 6
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=100.00 E-value=8.5e-77 Score=688.67 Aligned_cols=426 Identities=25% Similarity=0.394 Sum_probs=350.9
Q ss_pred CCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcC-CCEEEEEeCCceEeEEEEEeccCCCCccccCeeEE----EecC
Q 003010 10 LPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGD-TKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVE----LVEA 84 (858)
Q Consensus 10 Lp~~v~P~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~-~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~----~~~~ 84 (858)
=|..++|.||+|+|++|+++.+|+|+|+|++++.++ ++.|+||+.+|+|++|.+++. ...+. .+..
T Consensus 7 n~~~~~~~hy~L~L~vd~~~~~~~G~v~i~l~~~~~~~~~i~Ld~~~L~I~~V~v~g~---------~~~~~~~~~~~~~ 77 (601)
T TIGR02411 7 NYKDFRTSHTDLNLSVDFTKRKLSGSVTFTLQSLTDNLNSLVLDTSYLDIQKVTINGL---------PADFAIGERKEPL 77 (601)
T ss_pred CCCCcEEEEEEEEEEEeecCCEEEEEEEEEEEECCCCCcEEEEECCCCEEEEEEECCc---------ccceEeccccCCC
Confidence 377899999999999999999999999999999765 588999999999999988642 11222 2235
Q ss_pred CeEEEEEeCCCcCCc-eEEEEEEEEeeeCCCCcceEEeeec-cCCeeeecccccCCcCCccceeccCCCCCCeeEEEEEE
Q 003010 85 DEILVLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYE-LNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITL 162 (858)
Q Consensus 85 ~~~l~i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y~-~~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l~i 162 (858)
++.|+|.+++++.+| .++|+|.|++.. +..|++...+. .+|..+++++|||||++||+||||||+|++||+|+++|
T Consensus 78 g~~L~I~l~~~l~~g~~~~l~I~Y~~~~--~~~gl~~~~~~~t~g~~~py~~Tq~qp~~AR~~fPC~D~P~~Katf~~~I 155 (601)
T TIGR02411 78 GSPLTISLPIATSKNKELVLNISFSTTP--KCTALQWLTPEQTSGKKHPYLFSQCQAIHARSVIPCQDTPSVKSTYTAEV 155 (601)
T ss_pred CCeEEEEeCCccCCCceEEEEEEEeecC--CCceeEEecccccCCCCCCEEEECCcccchheeeeecCCcccceEEEEEE
Confidence 678999999999999 899999999975 34577654332 35777788899999999999999999999999999999
Q ss_pred EeCCCCeEEecCCccceeecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHH-HHH
Q 003010 163 DVPSELVALSNMPVIDEKVDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAV 241 (858)
Q Consensus 163 ~~p~~~~a~Sn~~~~~~~~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~ 241 (858)
++| ++|++||....+.. ++..+++|..++|||+||+||+||+|+..+ .|.++++|++|+..+.+++++. .+.
T Consensus 156 ~~P--~~av~sg~~~~~~~-~~~~~~~F~~t~pmptYLia~avG~~~~~~----~g~~~~v~~~p~~~~~~~~~~~~~~~ 228 (601)
T TIGR02411 156 ESP--LPVLMSGIPDGETS-NDPGKYLFKQKVPIPAYLIALASGDLASAP----IGPRSSVYSEPEQLEKCQYEFEHDTE 228 (601)
T ss_pred eeC--cceeccCCcccccc-CCCceEEEEeCCCcchhhheeeeccceecc----cCCceEEEccchhHHHHHHHHHHhHH
Confidence 999 88886665444332 345578999999999999999999998654 3678999999998888888888 999
Q ss_pred HHHHHHHHHhCCCCCCCCcceeec-CCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCcccc
Q 003010 242 KTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTM 320 (858)
Q Consensus 242 ~~l~~~e~~fg~~yp~~kld~v~~-P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~ 320 (858)
++|+++|+++| |||++|+|+|++ |+|+.||||||| ++|.+..++.+.. ....+||||+|||||||+||+
T Consensus 229 ~~l~~~e~~~~-pYp~~k~d~vvlpp~f~~GgMEN~~-ltf~~~~ll~~d~--------s~~~viaHElAHqWfGNlVT~ 298 (601)
T TIGR02411 229 NFIKTAEDLIF-PYEWGQYDLLVLPPSFPYGGMENPN-LTFATPTLIAGDR--------SNVDVIAHELAHSWSGNLVTN 298 (601)
T ss_pred HHHHHHHHhCC-CCcCccceEEEecCccccccccccc-ceeeccccccCCh--------hhhhhHHHHHHhhccCceeec
Confidence 99999999877 999999999987 789999999999 5788777776532 235799999999999999999
Q ss_pred CccchhHHhhhHHHHHHHHHHhhhCcchhHH-HHHHH--HHHHHHhhhccCCCCceeeecCCch--hhhhccccccccch
Q 003010 321 EWWTHLWLNEGFATWVSYLAADSLFPEWKIW-TQFLD--ECTEGLRLDGLAESHPIEVEVNHTG--EIDEIFDAISYRKG 395 (858)
Q Consensus 321 ~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~D~~~~~~pi~~~~~~~~--~i~~~f~~i~Y~Kg 395 (858)
+||+|+|||||||+|++++++++++|++... ..+.. .....+ +.+...+|+...+.+.. +++..|+.++|.||
T Consensus 299 ~~W~d~WLnEGfaty~e~~~~~~~~~e~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~dp~~~f~~i~Y~KG 376 (601)
T TIGR02411 299 CSWEHFWLNEGWTVYLERRIVGRLYGEKTRHFSALIGWGELQESV--KTLGEDPEYTKLVVDLKDNDPDDAFSSVPYEKG 376 (601)
T ss_pred CCchHHHHHhhHHHHHHHHHHHHhcCcHHHHHHHHHhHHHHHHHH--HhhcCCCCCCcccccCCCCChhhhccccchhhH
Confidence 9999999999999999999999999986431 11111 111122 22334455554433322 67889999999999
Q ss_pred hHHHHHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhcc-----CCCHHHH-HHHhhcCCCcceEEEEEe
Q 003010 396 ASVIRMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGS-----GEPVNKL-MNSWTKQKGYPVISVKVK 465 (858)
Q Consensus 396 a~vl~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~s-----g~~l~~~-~~~W~~~~G~P~l~v~~~ 465 (858)
+++|+||+..|| ++.|+++||.|+++|+|++++++|||+++.+.. +.++..+ |+.|++++|+|.+.+..+
T Consensus 377 a~~L~mL~~~lG~~~~F~~~lr~Yl~~~~~~s~~t~df~~~l~~~~~~~~~~~~l~~~~~~~Wl~~~G~P~~~~~~~ 453 (601)
T TIGR02411 377 FNFLFYLEQLLGGPAVFDPFLKHYFKKFAYKSLDTYQFKDALYEYFKDTGKVDKLNAVDWDTWLYSPGLPPVKPNFD 453 (601)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhccccchhhhhhHHHHhcCCCCCCcCCCCC
Confidence 999999999999 999999999999999999999999999998763 2456666 899999999999876543
No 7
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=100.00 E-value=3.6e-75 Score=656.65 Aligned_cols=385 Identities=46% Similarity=0.821 Sum_probs=344.2
Q ss_pred CCCCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeccCCCCccccCeeEEEecCCeEE
Q 003010 9 RLPKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTKVELVEADEIL 88 (858)
Q Consensus 9 rLp~~v~P~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (858)
|||++++|.||+|.|+++++..+|+|+|+|++++.++++.|+||+.+++|.++.+.+.... .......+.++.+++.+
T Consensus 1 RLp~~v~p~~Y~L~L~~~~~~~~f~G~v~I~~~~~~~~~~I~L~~~~l~I~~v~~~~~~~~--~~~~~~~~~~~~~~~~l 78 (390)
T PF01433_consen 1 RLPDDVDPLHYDLDLTPDFEKRTFSGTVTITFEVTEPTNSIVLHAKDLSISSVSLNGNDSS--SEYKSSPFEYDDENEKL 78 (390)
T ss_dssp S--TTEEEEEEEEEEEEETTTTEEEEEEEEEEEESSTECEEEEEESSEEEEEEEETTEECS--CTECCEEEEEECCBTEE
T ss_pred CCCCCeEEEEEEEEEEEeCCCCEEEEEEEEEEEEecCCCEEEEEeeccEEEEEeecCcccc--ccccccceeecccccee
Confidence 8999999999999999999999999999999999999999999999999999998653221 11122337888888999
Q ss_pred EEEeCCCcCCc-eEEEEEEEEeeeCCCCcceEEeeecc--CCeeeecccccCCcCCccceeccCCCCCCeeEEEEEEEeC
Q 003010 89 VLEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSYEL--NGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVP 165 (858)
Q Consensus 89 ~i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y~~--~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l~i~~p 165 (858)
.|.+++++.+| .|+|+|.|+|.++++..|+|++.|.+ ++...++++||+||.+||+||||||+|.+||+|+++|++|
T Consensus 79 ~I~l~~~l~~g~~~~L~I~y~g~~~~~~~G~~~~~y~~~~~~~~~~~~~t~~~p~~ar~~fPc~D~p~~ka~f~~~i~~p 158 (390)
T PF01433_consen 79 TITLPKPLPPGSNYTLRIEYSGKISDDSSGLYRSSYTDQTNGNTRWYIYTQFEPNGARRWFPCFDEPSFKATFDLTITHP 158 (390)
T ss_dssp EEEEEEECSTTEEEEEEEEEEEECBSSSSEEEEEEEE-GTSSSETCEEEEE-TTTTGGGTSSB--STTSEEEEEEEEEEE
T ss_pred ehhhhhhcccCcEEEEEEEEeecccccccccccceeecccccccCCceeecccccccceeeeeeccCCccceEEEeeecc
Confidence 99999999999 79999999999999999999999976 6888999999999999999999999999999999999999
Q ss_pred CCCeEEecCCcccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHHHHHHHH
Q 003010 166 SELVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALNVAVKTL 244 (858)
Q Consensus 166 ~~~~a~Sn~~~~~~~-~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~~~~~~l 244 (858)
++++|+|||++.+.. ..+++++++|..++|||+|++||++|+|..++..+.+|+++++|++|+..+..+++++.+.+++
T Consensus 159 ~~~~~~sng~~~~~~~~~~~~~~~~f~~t~p~~~yl~a~~vg~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 238 (390)
T PF01433_consen 159 KDYTALSNGPLEEEESNDDGWKTTTFETTPPMPTYLFAFAVGDFESVEVTTKSGVPVRVYARPGDEEQLQFALDIAPKAL 238 (390)
T ss_dssp TTTEEEESSEEEEEEEETTTEEEEEEEEEEEEEGGG--EEEESEEEEEEETTTEEEEEEEEECTCGGGHHHHHHHHHHHH
T ss_pred ccceeeccccccccccccccceeEeeecccccCchhhhhhcCcccccccccccccchheeehhhhHHHHHHHHHhhHHHH
Confidence 999999999999874 4468999999999999999999999999998866666799999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 003010 245 ELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (858)
Q Consensus 245 ~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (858)
++|+++||+|||++|+|+|++|+|..|||||||+|+|++..++++++.++...++.+..+||||+|||||||+||++||+
T Consensus 239 ~~~~~~~g~~yp~~k~~~v~~p~~~~~~me~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWfGn~vt~~~w~ 318 (390)
T PF01433_consen 239 EYYEEYFGIPYPFKKLDIVAVPDFPFGGMENWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWFGNLVTPKWWS 318 (390)
T ss_dssp HHHHHHHTS--SSSEEEEEEEST-SSSEE--TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTBTTTEEESSGG
T ss_pred HHHHhhccccceecceeEEEEeccccccccccccccccccccccCcccccchhhhhhHHHHHHHHHHHHhccCCccccch
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHHhhhccCCCCceeeecCCchhhhhccccccccch
Q 003010 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGLRLDGLAESHPIEVEVNHTGEIDEIFDAISYRKG 395 (858)
Q Consensus 325 d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~pi~~~~~~~~~i~~~f~~i~Y~Kg 395 (858)
|+||+||||+|++++++++.+|++.++..+..+.. .++..|+...++|+..++.++.++...|+.++|.||
T Consensus 319 d~WL~Eg~a~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~pl~~~~~~~~~~~~~f~~~~Y~KG 390 (390)
T PF01433_consen 319 DLWLNEGFATYLEYLILEKLFGEWQMMELFLVQEMQRALREDALPNSHPLSSEVEDPSDIDDMFDDISYNKG 390 (390)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHTSTTCCCSSSSSSSESCGGGGSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHhhccCcccchhhhhhhhHHHHHHHhhcCCCcceEeCCCCCCChHHhcCccccCCC
Confidence 99999999999999999999999998888877766 789999999999999888899999999999999998
No 8
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-53 Score=453.62 Aligned_cols=430 Identities=26% Similarity=0.395 Sum_probs=339.9
Q ss_pred CCCceeeEEEEEEEecCCCCeEEEEEEEEEEEEcCCCEEEEEeCCceEeEEEEEeccCCCCccccCee-EEEecCCeEEE
Q 003010 11 PKFAVPKRYDIRLTPDLTSCKFGGSVAIDVDVVGDTKFIVLNAADLTINNRSVSFTNKVSSKALEPTK-VELVEADEILV 89 (858)
Q Consensus 11 p~~v~P~~Y~l~l~~d~~~~~f~G~v~I~~~~~~~~~~i~Lh~~~l~I~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 89 (858)
|..+.-.|++|++++|++...++|+|.+++++......|+|+.++|.|.+|.+++... ...+.. -.+...+..+.
T Consensus 13 ~~~~~~~H~~l~~~vdF~~~~i~G~a~l~l~~~~~~~~~~LDt~~l~i~~v~i~~~~~----~~~i~~~~~~~g~~~~~~ 88 (613)
T KOG1047|consen 13 YRDVTVLHLALNLRVDFEKRGISGSALLTLRLLEDNLKLVLDTRDLSIRNVTINGEEP----PFRIGFRQPFLGSGQKLV 88 (613)
T ss_pred hhhhhhheeeeeEEEecccceecceEEEEEEeccCCceeEeeecceeeEEeeccCCCC----CCccCcccCCCCCceEEE
Confidence 4556789999999999999999999999999888777799999999999999976321 111111 11222233355
Q ss_pred EEeCCCcCCc-eEEEEEEEEeeeCCCCcceEEeee-ccCCeeeecccccCCcCCccceeccCCCCCCeeEEEEEEEeCCC
Q 003010 90 LEFAETLPTG-MGVLAIGFEGVLNDKMKGFYRSSY-ELNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLDVPSE 167 (858)
Q Consensus 90 i~l~~~L~~g-~~~l~i~y~g~l~~~~~G~y~~~y-~~~g~~~~~~~Tq~ep~~AR~~fPc~DeP~~ka~f~l~i~~p~~ 167 (858)
+..+.+ +.| +.+|.|.|...- +..++-.-.- ...|+++.++.||++..+||..|||+|-|+.|.||+..|.+|.+
T Consensus 89 l~~~~~-~a~~~~~l~i~y~Ts~--~atalqwL~peQT~gk~~PylfsQCQAIhaRsi~PC~DTPavK~ty~a~v~vp~~ 165 (613)
T KOG1047|consen 89 LPAPSS-KAGERLQLLIWYETSP--SATALQWLNPEQTSGKKHPYLFSQCQAIHARSIFPCQDTPAVKSTYTAEVEVPMG 165 (613)
T ss_pred eccccc-cccCceEEEEEEeccC--CcceeEEeccccccCCCCCchHHHHHHhHHheeccccCCCcceeEEEEEEEcCCc
Confidence 544333 355 899999998653 3344432222 23577888999999999999999999999999999999999999
Q ss_pred CeEEecCCcccee-ecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeecccCCeEEEEEEcCCchhhHHHHHH-HHHHHHH
Q 003010 168 LVALSNMPVIDEK-VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKVRVYCQVGKANQGKFALN-VAVKTLE 245 (858)
Q Consensus 168 ~~a~Sn~~~~~~~-~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v~v~~~~~~~~~~~~~l~-~~~~~l~ 245 (858)
+.+++++....+. ...++..++|....|+|+||+||++|+....+ -|..-+||+.|...+.+++-+. .+.++|+
T Consensus 166 l~a~mSai~~~~~~~~~~~~~f~f~q~~pIP~YLiai~~G~L~s~e----IgpRs~VwaEp~~~~a~~~ef~~~~e~~L~ 241 (613)
T KOG1047|consen 166 LTALMSAIPAGEKPGSNGRAIFRFKQEVPIPSYLIAIAVGDLESRE----IGPRSRVWAEPCLLDACQEEFAGETEDFLK 241 (613)
T ss_pred ceeeeeccccccCCCCCCcceEEEEeccCchhhhHHHhhccccccc----cCCccceecchhhhHHHHHHHHhhhHHHHH
Confidence 9999888664443 34457889999999999999999999987654 3677899999999888877777 9999999
Q ss_pred HHHHHhCCCCCCCCcceeec-CCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccccCccc
Q 003010 246 LYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVTMEWWT 324 (858)
Q Consensus 246 ~~e~~fg~~yp~~kld~v~~-P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt~~~w~ 324 (858)
.-|+.+| ||++.++|++++ |+|++|||||+.|.+...+ ||-++. ....+|||||||.||||+||...|.
T Consensus 242 ~Ae~l~G-pY~WgryDllvlPpSFP~gGMENPcltF~TpT-llaGDr--------sl~~vIaHEIAHSWtGNlVTN~sWe 311 (613)
T KOG1047|consen 242 AAEKLFG-PYVWGRYDLLVLPPSFPFGGMENPCLTFVTPT-LLAGDR--------SLVDVIAHEIAHSWTGNLVTNASWE 311 (613)
T ss_pred HHHHHcC-CcccccceEEEecCCCCcccccCcceeeecch-hhcCCc--------chhhHHHHHhhhhhcccccccCccc
Confidence 9999999 999999999998 5899999999987776666 666554 3678999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHHH-HHH--hhhccCCCCceeeecCC--chhhhhccccccccchhHHH
Q 003010 325 HLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECT-EGL--RLDGLAESHPIEVEVNH--TGEIDEIFDAISYRKGASVI 399 (858)
Q Consensus 325 d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~D~~~~~~pi~~~~~~--~~~i~~~f~~i~Y~Kga~vl 399 (858)
+.||||||++|++..++..++|+-.. +|-.-.. ..+ ..|.+..+++...-+.+ .-+++..|+.+.|.||..+|
T Consensus 312 hfWLNEGfTvylErrI~g~~~g~~~~--~f~a~~gw~~L~~~~d~~g~~~~~tkLv~kl~~~dPDdafs~VpYeKG~~ll 389 (613)
T KOG1047|consen 312 HFWLNEGFTVYLERRIVGRLYGEAYR--QFEALIGWRELRPSMDLFGETSEFTKLVVKLENVDPDDAFSQVPYEKGFALL 389 (613)
T ss_pred hhhhcccchhhhhhhhhhhhcchhHH--HHHHhcChhhhhhHHHhcCCCcccchhhhhccCCChHHhhhcCchhhhhHHH
Confidence 99999999999999999999987432 2211111 111 23555556665432221 13567899999999999999
Q ss_pred HHHHHhhC-HHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC----CH--HHHHHHhhcCCCcceEEEE
Q 003010 400 RMLQNYLG-AECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE----PV--NKLMNSWTKQKGYPVISVK 463 (858)
Q Consensus 400 ~mL~~~lG-~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~----~l--~~~~~~W~~~~G~P~l~v~ 463 (858)
+.|++.+| ++.|...||.|+++|+++.+.++||.+.|-+.... ++ .--++.|++.+|.|-..-.
T Consensus 390 ~~Le~~lG~~~~Fd~FLr~Yv~kfa~ksI~t~dfld~Lye~fpe~kk~dil~~vd~~~Wl~~~G~Pp~~p~ 460 (613)
T KOG1047|consen 390 FYLEQLLGDPTRFDPFLRAYVHKFAFKSILTQDFLDFLYEYFPELKKKDILDEVDWDLWLNSPGMPPPKPN 460 (613)
T ss_pred HHHHHHhCChhhHHHHHHHHHHHhccceecHHHHHHHHHHhCcchhhhhhhccccHHHHhcCCCCCCCCCC
Confidence 99999999 77899999999999999999999999999876432 22 2346999999999985443
No 9
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=100.00 E-value=2.2e-49 Score=435.52 Aligned_cols=313 Identities=33% Similarity=0.540 Sum_probs=263.3
Q ss_pred eEEEcCCceeEEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhccCCHHHHHHHHHhc-ccCCcHHHHHHHH
Q 003010 532 WIKLNVNQTGFYRVKYDKDLAARLGYAIEMKQLSETDRFGILDDHFALCMARQQTLTSLLTLMASY-SEETEYTVLSNLI 610 (858)
Q Consensus 532 wi~~N~~~~gyyRV~Yd~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~g~l~~~~~l~l~~~l-~~E~~~~~w~~~~ 610 (858)
||++|.+++|||||+||+++|+.|+++|..+.|++.+|++|++|+|+|+++|.++++.+|+++.|+ ++|++|.||..++
T Consensus 1 wi~~N~~~~GyyRV~Yd~~~~~~l~~~L~~~~l~~~~R~~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~ 80 (324)
T PF11838_consen 1 WIKLNAGQTGYYRVNYDEENWDALIKQLQSNHLSPLDRAQLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTAL 80 (324)
T ss_dssp EEEESGGGSSSSEEEECTTHHHHHHHHHHHHGS-HHHHHHHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHH
T ss_pred CEEEeCCceEEEEEeCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 999999999999999999999999999987779999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc
Q 003010 611 TISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA 690 (858)
Q Consensus 611 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~ 690 (858)
+.|..+.+++...++.....|++|+++++.++++++||+..+++++....+|..|+.+|| |+++|+++|.++|++|+.
T Consensus 81 ~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 81 SNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhc
Confidence 999999977763224444559999999999999999999988899999999999999999 999999999999999998
Q ss_pred CCCC--CCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCc-ccc
Q 003010 691 DRTT--PLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSSE-VRS 767 (858)
Q Consensus 691 ~~~~--~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~-ir~ 767 (858)
++.. ..||||+|.+|||+ ++++|+.++|++++++|++++++.||..++.||||++||++++++|+++++++ ++.
T Consensus 159 ~~~~~~~~i~~dlr~~v~~~---~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~ 235 (324)
T PF11838_consen 159 GNDSPESSIPPDLRWAVYCA---GVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS 235 (324)
T ss_dssp TTT-TTSTS-HHHHHHHHHH---HTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T
T ss_pred CCcccccccchHHHHHHHHH---HHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc
Confidence 7433 38999999988776 55689999999999999999999999999999999999999999999999985 999
Q ss_pred ccceeeee-ec-cc--cHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHhccccCCHHHHHHHHhhhc--cccccccccc
Q 003010 768 QDAVYGLA-VS-IE--GRETAWKWLKDNWDHISKTWGSGF-LITRFISSIVSPVCCLHLSNYVFRFST--LTYVHFKCFP 840 (858)
Q Consensus 768 qd~~~~~~-vs-~~--g~~~aw~fl~~n~~~i~~~~~~~~-~l~~~i~~~~~~~~t~~~~~~v~~F~~--~~~i~w~~~~ 840 (858)
||+..++. ++ .+ |++++|+|+++||+.|.+++++.. .++.++..+++.++|+++++++++||+ .....=.+|.
T Consensus 236 ~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~ 315 (324)
T PF11838_consen 236 QDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRA 315 (324)
T ss_dssp TTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHH
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHH
Confidence 99988888 76 55 999999999999999999998654 789999999999999999999999994 3334444455
Q ss_pred cchhHHHHH
Q 003010 841 LDPFFVSFC 849 (858)
Q Consensus 841 ~~~~~~~~~ 849 (858)
.++.++.||
T Consensus 316 l~q~~e~Ir 324 (324)
T PF11838_consen 316 LAQSLETIR 324 (324)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 555555543
No 10
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=100.00 E-value=1.1e-34 Score=331.46 Aligned_cols=427 Identities=20% Similarity=0.274 Sum_probs=318.4
Q ss_pred eeEEEEEEE-ecCCCCeEEEEEEEEEEE-EcCCCEEEEEeCCceEeEEEEEeccCC---------------CCccc----
Q 003010 16 PKRYDIRLT-PDLTSCKFGGSVAIDVDV-VGDTKFIVLNAADLTINNRSVSFTNKV---------------SSKAL---- 74 (858)
Q Consensus 16 P~~Y~l~l~-~d~~~~~f~G~v~I~~~~-~~~~~~i~Lh~~~l~I~~~~~~~~~~~---------------~~~~~---- 74 (858)
-.|..+.|. +|+.+..+.|.++|++.. ..+...|.||++++.|.+|.|++..+. .+...
T Consensus 27 ~~hQkv~l~~Idf~~rsi~G~tEitI~P~~~nL~~i~l~~kql~I~sV~V~~~~~~f~y~d~~q~~~~~~~~~~~l~~~s 106 (1180)
T KOG1932|consen 27 VLHQKVSLSNIDFSKRSIIGFTEITIQPLVPNLSVIVLHSKQLRILSVLVNGSPTKFIYNDPTQNDCTDEIWQRVLDPAS 106 (1180)
T ss_pred ceEEEEEeecccceeeEEEeEEEEEEecCCCCcceEEEeccccEEEEEEecCcccceeecchhhhhhhhhhhhhhhhhhh
Confidence 489999998 999999999999999997 455899999999999999999765210 00000
Q ss_pred -----cCeeEEEecCCeEEEEEeCCCcCC-c----eEEEEEEEEeeeCCCCcceEEeeeccCCeeeecccccCC-cCCcc
Q 003010 75 -----EPTKVELVEADEILVLEFAETLPT-G----MGVLAIGFEGVLNDKMKGFYRSSYELNGEKKNMAVTQFE-PADAR 143 (858)
Q Consensus 75 -----~~~~~~~~~~~~~l~i~l~~~L~~-g----~~~l~i~y~g~l~~~~~G~y~~~y~~~g~~~~~~~Tq~e-p~~AR 143 (858)
...-...+..++.|.|.++++++. | ..+|+|+|+..=|..+--|++..|..+.....+.++..+ +.+||
T Consensus 107 ~~~~~~~~y~~l~~~~g~L~I~ipk~~~~~~ee~~~lr~~I~~s~~~pk~gi~Fv~~~~~~~~~~~hvft~~~~~~s~ar 186 (1180)
T KOG1932|consen 107 QSHFLAVQYEDLDEDNGELLIKIPKESKKVGEELKALRLRIDFSVREPKDGIKFVRPNYIVSPRDKHVFTNNTQISSSAR 186 (1180)
T ss_pred hhhhHHHhhhccccCCCeEEEEcCchhhhhhhhccceEEEEEEEccCCCCCeEEeccCcccCcccCceEeecCccccccc
Confidence 011122345568899999988543 3 456779998766666666777766333333344444444 56799
Q ss_pred ceeccCCCCCCeeEEEEEEEeCCCCeEEecCCcccee--ecCCeEEEEEEeCCCCcceEEEEEEeeeeEeeecccCCeEE
Q 003010 144 RCFPCWDEPACKATFKITLDVPSELVALSNMPVIDEK--VDGNMKTVSYQESPIMSTYLVAVVIGLFDYVEDHTSDGIKV 221 (858)
Q Consensus 144 ~~fPc~DeP~~ka~f~l~i~~p~~~~a~Sn~~~~~~~--~~~~~~~~~F~~t~~mstyl~a~~vg~f~~~~~~~~~g~~v 221 (858)
.||||.|.+..+++|++++++|+.++++|+|.+.... .+-+.++++|.-+.|+++..+||+||+|+.... ..++++
T Consensus 187 ~WfPCvD~~~e~~tWeLeftvp~~~~av~~geLl~~v~~~D~~Kkt~~ys~tvPvA~~~I~~AiG~F~~~~~--P~~~~i 264 (1180)
T KOG1932|consen 187 SWFPCVDSSYERCTWELEFTVPKNLVAVSCGELLEQVETPDLRKKTYHYSLTVPVAPSNIGFAIGPFKSYVE--PSMIDI 264 (1180)
T ss_pred eEEeecCCccccceEEEEEEecccceeccchhhhheeecccccccEEEEEEeccCCccccceeeccccccCC--CccCcc
Confidence 9999999999999999999999999999999988763 334578899999999999999999999998732 347899
Q ss_pred EEEEcCCchhhHHHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHH
Q 003010 222 RVYCQVGKANQGKFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV 301 (858)
Q Consensus 222 ~v~~~~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~ 301 (858)
..|+.|+.........-...++++|||+++|..|||+.+.+|++|.-..--|....|.++..+ +||+.+. ++.....
T Consensus 265 ~~f~LP~~~~~v~nt~~~l~k~iefye~~ls~rYPF~~~k~VFvd~~~~~i~~~asl~I~st~-lLy~~~i--IDq~~~t 341 (1180)
T KOG1932|consen 265 THFCLPGLEPLVKNTTVYLHKAIEFYEEELSSRYPFSCYKTVFVDEAAVEISSYASLSIFSTS-LLYSKNI--IDQTFLT 341 (1180)
T ss_pred eeEecCcchHHhhhHHHHHHHHHHHHHHHhccCCCcceeeEEEecCCcceeeecceeeeeecc-ccchHhh--hhHHHHH
Confidence 999999999888888889999999999999988999999999999887777777888888877 8888763 3344456
Q ss_pred HHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhhccC----CCCceeeec
Q 003010 302 ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLA----ESHPIEVEV 377 (858)
Q Consensus 302 ~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~pi~~~~ 377 (858)
...+|--+|.||||-++|+..|+|.||.+|+|.|+..+++++.+|..++.-+...+.-.....|-.. .+.|+....
T Consensus 342 r~~La~aLA~Q~fg~yIsp~~wsD~Wl~~GiagYl~~l~~kk~lGNNEyry~lKk~~d~V~~~d~~~g~i~l~~Pi~~s~ 421 (1180)
T KOG1932|consen 342 RRKLAWALASQWFGVYISPVDWSDFWLLKGIAGYLTGLFVKKFLGNNEYRYQLKKALDAVVDYDVQKGAIYLTRPISPSM 421 (1180)
T ss_pred HHHHHHHHHHhhhEEEeeccchhhhHHHHhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhhccCceeeccCCCcch
Confidence 7789999999999999999999999999999999999999999998766444333322334444321 122333221
Q ss_pred C--------------CchhhhhccccccccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCC
Q 003010 378 N--------------HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEP 443 (858)
Q Consensus 378 ~--------------~~~~i~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~ 443 (858)
. .....+..|..-.-.|+..+.+|+++.+|.+-|.+..+..+. .++...
T Consensus 422 k~~~~~~~~lh~~~r~~~~~s~~~~~a~~~k~~~~~~m~~~~i~~e~~~q~f~kv~~-----------------~~~~~~ 484 (1180)
T KOG1932|consen 422 KFKLKGPFHLHISIRHLHTLSGSYGMAFVIKKLLLQRMSGNRINEELSFQVFNKVLE-----------------LASKML 484 (1180)
T ss_pred hhcccCcceeeecccceeecChhHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH-----------------hhhhhH
Confidence 1 000111111111234777788888888888777655554443 222223
Q ss_pred HHHHHHHhhcCCCcceEEEEE
Q 003010 444 VNKLMNSWTKQKGYPVISVKV 464 (858)
Q Consensus 444 l~~~~~~W~~~~G~P~l~v~~ 464 (858)
++.|++.|++..|+|++.+..
T Consensus 485 ~k~~~~~Wv~~~g~~~~r~~~ 505 (1180)
T KOG1932|consen 485 LKSFFQTWVYGLGVPILRLGQ 505 (1180)
T ss_pred HHHHHHHHHhccCCeeEEEEE
Confidence 578888888888888887764
No 11
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.18 E-value=1.4e-09 Score=118.35 Aligned_cols=298 Identities=17% Similarity=0.204 Sum_probs=181.4
Q ss_pred EEEEEEeCCCCeEEecCCccceeecCCeE---EEEEEeCCCCcceEEEEEEeeeeEeee-cccCCeEEEEEEcCCchhhH
Q 003010 158 FKITLDVPSELVALSNMPVIDEKVDGNMK---TVSYQESPIMSTYLVAVVIGLFDYVED-HTSDGIKVRVYCQVGKANQG 233 (858)
Q Consensus 158 f~l~i~~p~~~~a~Sn~~~~~~~~~~~~~---~~~F~~t~~mstyl~a~~vg~f~~~~~-~~~~g~~v~v~~~~~~~~~~ 233 (858)
+.+++.-|+ |.+.+..|.+.+...- .. ..+|..+|.+ +|.|...+- .+..+..+.++..-. ..+.
T Consensus 115 ~~~~~~~p~-wriAT~L~~~~~~~~~-F~aa~~~~lvDSPve--------~g~~~~~~~e~~g~ph~~~~~g~~p-~~d~ 183 (558)
T COG3975 115 LELTVIPPE-WRIATALPPVATGRFV-FYAASYEELVDSPVE--------AGLFELLDFEVTGAPHTIALRGELP-NFDK 183 (558)
T ss_pred eEEEecCcc-ceeeecCCccccCCce-eecccHHHhcCChhh--------ccccceeeeeccCCceeEEEeeccc-cccH
Confidence 566665444 8887777655431100 00 1123344433 233333221 222334445444321 2356
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeec-CCCCCccccccccceeecccccccCCCChHHH-HHHHHHHHHHHHHH
Q 003010 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAI-PDFAAGAMENYGLVTYRETALLYDDQHSAAAN-KQRVATVVAHELAH 311 (858)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~-P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~-~~~~~~~iaHElaH 311 (858)
+...+.++++++.=.+.|| +-|+.++.+++- -+-..|||||-.-.. +.++...-+..+ .+....+++||..|
T Consensus 184 ~~~~~~~k~ii~~~~~vFg-~~~~~~Y~Fl~~~s~q~~GGlEH~~St~-----l~~~r~~~~~~~ky~~~l~llsHEyfH 257 (558)
T COG3975 184 ERLASDTKKIIEAEIKVFG-SAPFDKYVFLLHLSDQIYGGLEHRRSTA-----LIYDRFGFTDQDKYQDLLGLLSHEYFH 257 (558)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCccceEEEEEecCCCCCCceeccccc-----cccccccccchhHHHHHHHHHHHHHHH
Confidence 6777888999999999999 789999887754 555678999854333 333221111223 46678999999999
Q ss_pred HHhcCccccCc-c----------chhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHH---HHHHhhhccCCCCceeeec
Q 003010 312 QWFGNLVTMEW-W----------THLWLNEGFATWVSYLAADSLFPEWKIWTQFLDEC---TEGLRLDGLAESHPIEVEV 377 (858)
Q Consensus 312 qWfGnlVt~~~-w----------~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~D~~~~~~pi~~~~ 377 (858)
-|-+-.+.+.- | .-+|+.|||++|+..+..-+.. -.. .++|+... ..++..-...-.+|+....
T Consensus 258 ~WNvKrIrpa~l~p~~~d~en~t~~lW~~EG~T~Yy~~ll~lRsg-l~~-~~~~l~~la~tl~~~~~~~gRl~~~laEsS 335 (558)
T COG3975 258 AWNVKRIRPAALEPFNLDKENYTPLLWFSEGFTSYYDRLLALRSG-LIS-LETYLNYLAKTLARYLNTPGRLRQSLAESS 335 (558)
T ss_pred hccceeccccccCCccccccCCCcceeeecCchHHHHHHHHHHhc-cCc-HHHHHHHHHHHHHHHhcCCceecccccccc
Confidence 99998877743 2 4599999999999977654321 101 12333322 2222222222223333221
Q ss_pred CCc-----hhhhhcc-ccc--cccchhHHHHHHHHhh-----CHHHHHHHHHHHHHHhcc--CCCChHHHHHHHHhccCC
Q 003010 378 NHT-----GEIDEIF-DAI--SYRKGASVIRMLQNYL-----GAECFQRSLASYIKKYAC--SNAKTEDLWAALEEGSGE 442 (858)
Q Consensus 378 ~~~-----~~i~~~f-~~i--~Y~Kga~vl~mL~~~l-----G~~~F~~~l~~yl~~~~~--~~~~~~df~~~l~~~sg~ 442 (858)
.++ .. +..+ +.+ .|.||++|--+|...| |...+...|+.+.+.+.. +..+++|+...+++++|.
T Consensus 336 ~~awik~yr~-d~ns~n~~~sYY~kG~lv~L~lDl~iR~r~~~~~SLDdvmram~~~~~~~~~~~t~e~v~av~~~~tg~ 414 (558)
T COG3975 336 FDAWIKYYRP-DENSPNRLVSYYQKGALVALLLDLLIRERGGGQKSLDDVMRALWKEFGRAERGYTPEDVQAVLENVTGL 414 (558)
T ss_pred cchhHHhhcc-cccccccchhhhhchhHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCcCccCCCHHHHHHHHHhhccc
Confidence 110 00 1111 122 3899999998888887 566788888888888766 667999999999999999
Q ss_pred CHHHHHHHhhcCCCcceEEEEEeCCEEEEEEEe
Q 003010 443 PVNKLMNSWTKQKGYPVISVKVKEEKLELEQSQ 475 (858)
Q Consensus 443 ~l~~~~~~W~~~~G~P~l~v~~~~~~~~l~Q~r 475 (858)
++..||+..+.+.--|.+.---....+++++++
T Consensus 415 dl~~f~~~~i~~~~~~~l~~~l~~~gL~~~~~~ 447 (558)
T COG3975 415 DLATFFDEYIEGTEPPPLNPLLERFGLTFTPKP 447 (558)
T ss_pred cHHHHHHHHhhcCCCCChhhhhhhcceEEEecC
Confidence 999999999998877665443333456666654
No 12
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=99.14 E-value=6.1e-11 Score=111.00 Aligned_cols=106 Identities=29% Similarity=0.499 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhhccCCCCceeeecC
Q 003010 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVN 378 (858)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~pi~~~~~ 378 (858)
..+..+++||++|+|+++.+........|++||+|+|++.. ..+ .+......++..+....-.++.....
T Consensus 23 ~~~~~~l~HE~~H~~~~~~~~~~~~~~~W~~EG~A~y~~~~----~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~ 92 (128)
T PF13485_consen 23 DWLDRVLAHELAHQWFGNYFGGDDNAPRWFNEGLAEYVEGR----IED------EFDEDLKQAIESGSLPPLEPLNSSFD 92 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCccCchHHHHHHHHHHhcC----ccc------hhHHHHHHHHHcCCCCChHHHhcccc
Confidence 45668999999999999999877778899999999999933 111 11122222333333333333322111
Q ss_pred CchhhhhccccccccchhHHHHHHHHhhCHHHHHHHHHHH
Q 003010 379 HTGEIDEIFDAISYRKGASVIRMLQNYLGAECFQRSLASY 418 (858)
Q Consensus 379 ~~~~i~~~f~~i~Y~Kga~vl~mL~~~lG~~~F~~~l~~y 418 (858)
. ...+....|.+|++++++|....|++.|++.|++|
T Consensus 93 ~----~~~~~~~~Y~~~~~~~~~L~~~~G~~~~~~~l~~~ 128 (128)
T PF13485_consen 93 F----SWEDDSLAYYQGYLFVRFLEEKYGREKFKAFLREY 128 (128)
T ss_pred c----cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 33455678999999999999999999999999875
No 13
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=97.68 E-value=0.0019 Score=69.94 Aligned_cols=222 Identities=20% Similarity=0.246 Sum_probs=123.3
Q ss_pred cCCeEEEEEEcCC-----chh--hHHHHHHH-HH--HHHHHHHHHhCCCC-----CCCCcc------eeec---CCCC-C
Q 003010 216 SDGIKVRVYCQVG-----KAN--QGKFALNV-AV--KTLELYKEYFAVPY-----SLPKLD------MIAI---PDFA-A 270 (858)
Q Consensus 216 ~~g~~v~v~~~~~-----~~~--~~~~~l~~-~~--~~l~~~e~~fg~~y-----p~~kld------~v~~---P~~~-~ 270 (858)
.+|..+.||..-+ ... .++...+. .. ++.+...+.||-|+ ..+|++ +|.+ |+.. .
T Consensus 16 ~~g~~vnvWVed~e~~~~~is~~~~~~l~~~F~~~~~iYp~~~~ifG~pwg~d~d~~~~I~~~~~v~iviln~~~~~~~~ 95 (366)
T PF10460_consen 16 YDGRTVNVWVEDGEYGSNKISDAQADSLAQEFDNSGKIYPRLVEIFGEPWGSDVDGNGKIPTGQPVDIVILNFNPDGSPY 95 (366)
T ss_pred cCCcEEEEEEEcCccCccccCHHHHHHHHHHhccccccchhHHHhcCCCCCCCCCCCCcccCCCceEEEEEecCCCCCce
Confidence 4678888888755 222 22222222 22 46666777888663 233443 5555 2211 1
Q ss_pred c----------------cccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHH--hcCccccCc--cchhHHhh
Q 003010 271 G----------------AMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW--FGNLVTMEW--WTHLWLNE 330 (858)
Q Consensus 271 g----------------amEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW--fGnlVt~~~--w~d~WLnE 330 (858)
| .-.|.|.++|-....++.... .....+..++|||+-|+= --+.|...- -.|+||||
T Consensus 96 G~~GYF~s~d~~~~~~~~~SNe~e~~YiD~~~~~~~~~---~~~~~~~sTlAHEfQHmInfy~~~v~~g~~~~~dtWLnE 172 (366)
T PF10460_consen 96 GTAGYFWSSDLYPKSSNPYSNESEYFYIDSETLYLGGN---SGPDTVYSTLAHEFQHMINFYQRGVLHGKQYAMDTWLNE 172 (366)
T ss_pred eeeeeecHHHcccccccCCCcceeEEEEecHHhhccCC---ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 223344444444333322211 124457899999999984 334454432 36999999
Q ss_pred hHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhh-ccCCCCceeeecCCchhhhhccccccccchhHHHHHHHHhhCHH
Q 003010 331 GFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLD-GLAESHPIEVEVNHTGEIDEIFDAISYRKGASVIRMLQNYLGAE 409 (858)
Q Consensus 331 GfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~~pi~~~~~~~~~i~~~f~~i~Y~Kga~vl~mL~~~lG~~ 409 (858)
|+|.-+++++..+..+...- ........+..+ .....+.+... .... -....|....+++.-|....|.+
T Consensus 173 ~lS~~aEdl~s~~~~~~~n~---i~d~R~~~y~~~~~~~~~~~l~~w-~~~g-----~~l~sYs~s~~Fg~~L~rQ~G~~ 243 (366)
T PF10460_consen 173 MLSMSAEDLYSSKIDPGYNN---IRDSRIPYYNNYTSGNYNCSLTAW-SSFG-----DSLASYSSSYSFGAYLYRQYGGD 243 (366)
T ss_pred HHHHHHHHHHhcCCCcccCc---cccccHHHHhhccccCCCcceeec-CCCc-----cccccchhHHHHHHHHHHHcChH
Confidence 99999999887776443211 000111111111 11112222211 1111 11357999999999999988998
Q ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHh-c-cCCCHHHHHHHhhcCC
Q 003010 410 CFQRSLASYIKKYACSNAKTEDLWAALEE-G-SGEPVNKLMNSWTKQK 455 (858)
Q Consensus 410 ~F~~~l~~yl~~~~~~~~~~~df~~~l~~-~-sg~~l~~~~~~W~~~~ 455 (858)
.+++.|.. -...+..+..++..+ + .+.++.++|.+|...-
T Consensus 244 ~~~~~l~~------~~~tds~avl~aa~~~~~~~~sf~~~l~~w~~A~ 285 (366)
T PF10460_consen 244 FYKKLLTN------SSSTDSEAVLDAAIKQAGPGNSFGELLRRWGVAL 285 (366)
T ss_pred HHHHHHhc------CCCCcHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 87666652 133566776666544 3 3568999999997655
No 14
>PF05299 Peptidase_M61: M61 glycyl aminopeptidase; InterPro: IPR007963 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M61 (glycyl aminopeptidase family, clan MA(E)).The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example is glycyl aminopeptidase from Sphingomonas capsulata.
Probab=97.05 E-value=0.00043 Score=62.99 Aligned_cols=44 Identities=23% Similarity=0.450 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCccccC-----------ccchhHHhhhHHHHHHHHHHhhh
Q 003010 301 VATVVAHELAHQWFGNLVTME-----------WWTHLWLNEGFATWVSYLAADSL 344 (858)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~-----------~w~d~WLnEGfA~y~~~~~~~~~ 344 (858)
...++|||..|.|.+-.+.|+ --+.+|+-|||++|++.+.+.+.
T Consensus 4 ~l~l~sHEffH~WnvkrirP~~l~p~dy~~~~~t~~LWv~EG~T~Y~~~l~l~Ra 58 (122)
T PF05299_consen 4 FLGLLSHEFFHSWNVKRIRPAELGPFDYEKPNYTELLWVYEGFTSYYGDLLLVRA 58 (122)
T ss_pred hhhhhhhhccccccceEeccccccCCCCCCCCCCCCEeeeeCcHHHHHHHHHHHc
Confidence 457899999999998666553 45679999999999998876553
No 15
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=95.77 E-value=2.5 Score=46.77 Aligned_cols=306 Identities=15% Similarity=0.150 Sum_probs=141.5
Q ss_pred EEEEEEEeecCCCCCCCCeeEEEEEEEe--Cccce-----eeeEEeecceeEEEecccccccccCCCCCCceEEEcCCce
Q 003010 468 KLELEQSQFLSSGSPGDGQWIVPITLCC--GSYDV-----CKNFLLYNKSDSFDIKELLGCSISKEGDNGGWIKLNVNQT 540 (858)
Q Consensus 468 ~~~l~Q~rf~~~~~~~~~~w~iPl~~~~--~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~wi~~N~~~~ 540 (858)
+++++|......+......|.|||.+.. .++.. ...+.+++.++++.+.++. .. -..-++-+.+
T Consensus 6 ~Ltl~Q~~p~tpgq~~K~P~~IPv~~gLl~~~G~~~~~~~~~vl~L~~~~qtf~F~~v~-------~~--PvpSllRgFS 76 (367)
T PF11940_consen 6 TLTLSQSTPPTPGQPEKQPLHIPVRVGLLDPDGKELPLRLERVLELTEAEQTFTFEGVS-------EK--PVPSLLRGFS 76 (367)
T ss_dssp EEEEEEEE--BTTBSS-----EEEEEEEE-TTS-B-SEEESEEEEE-SSEEEEEES----------S----EEEESTTG-
T ss_pred EEEEEecCCCCCCCCCCCCeeeeeEEEEECCCCCCccCCCCceEEeccCeEEEEEeCCC-------CC--ceeehhcCcc
Confidence 5789998766666666678999998843 32322 1235678888999987642 22 4678899999
Q ss_pred eEEEEEcCHHHHHHHHHHHHhcCCChhhHHHHHH--------HHHHHHHhc-cCCH-HHHHHHHHh-cc-cCCcHHHHHH
Q 003010 541 GFYRVKYDKDLAARLGYAIEMKQLSETDRFGILD--------DHFALCMAR-QQTL-TSLLTLMAS-YS-EETEYTVLSN 608 (858)
Q Consensus 541 gyyRV~Yd~~~w~~l~~~l~~~~i~~~~Ra~li~--------D~~~la~~g-~l~~-~~~l~l~~~-l~-~E~~~~~w~~ 608 (858)
.+-++.||-.. +.|.-.+..+. ++-+|..-.. +...-..+| .... ..+++.++. |. .+.+...-..
T Consensus 77 APV~l~~~~s~-~eL~~L~~~D~-D~FnRWdA~Q~L~~~~l~~~~~~~~~~~~~~~~~~~i~a~~~~L~d~~~d~a~~A~ 154 (367)
T PF11940_consen 77 APVKLEYDYSD-EELAFLAAHDS-DPFNRWDAAQTLATRILLALIADKQAGKPLALSAALIEAFRALLADDDLDPAFKAL 154 (367)
T ss_dssp SSSEEE----H-HHHHHHHHH-S-SHHHHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHHHHHHHHH-SSS-HHHHHH
T ss_pred cceEecCCCCH-HHHHHHHHcCC-ChhHHHHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999987322 22222222221 2344432111 111111121 1112 224444433 32 2333333333
Q ss_pred HHHH--HHHHHHHHhccChh--------HHHHHHHHHHHHhHHHHHhcCCccC---CCCCHHHHHHHHHHHHHHHhcCCH
Q 003010 609 LITI--SYKIGRIAADARPE--------LLDYLKQFFISLFQNSAEKLGWDSK---PGESHLDALLRGEIFTALALLGHK 675 (858)
Q Consensus 609 ~~~~--l~~l~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~lg~~~~---~~~~~~~~~lr~~i~~~ac~~g~~ 675 (858)
++.. ...|...+..-+|+ ....+..-+...+..+|+++.-... ..+....+.||..++.+.+..+.+
T Consensus 155 ~L~LPs~~~l~~~~~~iDp~~i~~ar~~l~~~la~~l~~~l~~~y~~~~~~~~y~~~~~~~g~RaLkn~~L~yL~~~~~~ 234 (367)
T PF11940_consen 155 LLTLPSESELAEQMENIDPDAIHAAREALRRALAQALRDELLALYQALAATGPYSPDAEAAGRRALKNLCLSYLAAADDP 234 (367)
T ss_dssp HTS---HHHHCTT-SSB-HHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHHTTTTT-SHHHHHHHHHHHHHHHHHHHCTCT
T ss_pred HccCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 3222 12222222110111 1122222333344555666511111 123344689999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHH
Q 003010 676 ETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLE 755 (858)
Q Consensus 676 ~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~ 755 (858)
+..+.|.+.|+.-. + ---|-+.+.+++..-....++..+..+++++.....-+|--.+.|.+... ..+.+
T Consensus 235 ~~~~la~~qy~~A~-n-------MTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~--~~l~~ 304 (367)
T PF11940_consen 235 EAAELAQEQYKSAD-N-------MTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSP--DTLER 304 (367)
T ss_dssp HHHHHHHHHHHHSS-S-------HHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--ST--THHHH
T ss_pred HHHHHHHHHHHhCC-C-------hhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCc--cHHHH
Confidence 99999999998641 0 12333333333332111123345666777766655567777777766554 45555
Q ss_pred HHHHHhcCccccccceeeeeeccc-cHHHHHHHHHHHHHHHHHHhCCC
Q 003010 756 VLNFLLSSEVRSQDAVYGLAVSIE-GRETAWKWLKDNWDHISKTWGSG 802 (858)
Q Consensus 756 ~L~~~l~~~ir~qd~~~~~~vs~~-g~~~aw~fl~~n~~~i~~~~~~~ 802 (858)
+-.+.-++.... -..| .|.+.-.|...|-..++..-|.+
T Consensus 305 V~~L~~Hp~F~~--------~NPNrvRaLig~Fa~~N~~~FH~~dG~G 344 (367)
T PF11940_consen 305 VKKLMQHPAFDL--------KNPNRVRALIGAFAQANPVQFHAADGSG 344 (367)
T ss_dssp HHHHTTSTTTTT--------T-HHHHHHHHHHHHHC-HHHHT-TTSHH
T ss_pred HHHHhcCCCCCC--------CCCcHHHHHHHHHHhcChhhhcCCCCcH
Confidence 555544442211 1223 55566666666666666655544
No 16
>PF07607 DUF1570: Protein of unknown function (DUF1570); InterPro: IPR011464 This entry represents hypothetical proteins confined to bacteria.
Probab=95.63 E-value=0.0069 Score=55.77 Aligned_cols=39 Identities=28% Similarity=0.259 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCccccC--ccchhHHhhhHHHHHHHHHH
Q 003010 303 TVVAHELAHQWFGNLVTME--WWTHLWLNEGFATWVSYLAA 341 (858)
Q Consensus 303 ~~iaHElaHqWfGnlVt~~--~w~d~WLnEGfA~y~~~~~~ 341 (858)
.+++||.+||=.-|.=-.. --.=.|+.||||+|++-...
T Consensus 3 ~T~~HEa~HQl~~N~Gl~~r~~~~P~Wv~EGlA~yFE~~~~ 43 (128)
T PF07607_consen 3 ATIAHEATHQLAFNTGLHPRLADWPRWVSEGLATYFETPGM 43 (128)
T ss_pred hHHHHHHHHHHHHHccccccCCCCchHHHHhHHHHcCCCcc
Confidence 5899999999877642211 11128999999999996544
No 17
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=95.51 E-value=0.29 Score=49.32 Aligned_cols=172 Identities=19% Similarity=0.263 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhCCC-CCCCCcceee--cCCCCCccc----cccccceeecccccccCCCChHHHHHHHHHHHHH
Q 003010 235 FALNVAVKTLELYKEYFAVP-YSLPKLDMIA--IPDFAAGAM----ENYGLVTYRETALLYDDQHSAAANKQRVATVVAH 307 (858)
Q Consensus 235 ~~l~~~~~~l~~~e~~fg~~-yp~~kld~v~--~P~~~~gam----En~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaH 307 (858)
.+.....++..+..+.|-.+ .+-+..+.|. +.++..-|- .+-.-|.++...+ -+... ....+..+..+|.|
T Consensus 25 ~a~~~L~~a~~~V~~~ly~~~~~~~~v~~Vt~~~~~~~gVA~t~gd~~~~~I~~S~~~i-~~~~~-~~~~~~Ei~Gvl~H 102 (205)
T PF04450_consen 25 DAEQVLRDASRFVWRLLYQSPADRKPVRSVTLILDDMDGVAYTSGDDDHKEIHFSARYI-AKYPA-DGDVRDEIIGVLYH 102 (205)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCcccEEEEEEECCCeeEEEecCCCccEEEEeHHHH-hhccc-ccchHHHHHHHHHH
Confidence 34445566666666666533 2233344433 234321111 1113455555532 22111 12344678999999
Q ss_pred HHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhhhCcchhHHHHHHHHHHHHHhhhccCCCCceeeecCCchhhhhcc
Q 003010 308 ELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFLDECTEGLRLDGLAESHPIEVEVNHTGEIDEIF 387 (858)
Q Consensus 308 ElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~pi~~~~~~~~~i~~~f 387 (858)
|++|.|=.+.-... --||-||+|.|+-..+ -..|. ....|... ..+
T Consensus 103 E~~H~~Q~~~~~~~---P~~liEGIADyVRl~a--G~~~~--------------------~w~~p~~~---------~~w 148 (205)
T PF04450_consen 103 EMVHCWQWDGRGTA---PGGLIEGIADYVRLKA--GYAPP--------------------HWKRPGGG---------DSW 148 (205)
T ss_pred HHHHHhhcCCCCCC---ChhheecHHHHHHHHc--CCCCc--------------------cccCCCCC---------CCc
Confidence 99997754443222 2389999999997552 01110 01111110 123
Q ss_pred ccccccchhHHHHHHHH-hhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCCCHHHHHHH
Q 003010 388 DAISYRKGASVIRMLQN-YLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGEPVNKLMNS 450 (858)
Q Consensus 388 ~~i~Y~Kga~vl~mL~~-~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~~l~~~~~~ 450 (858)
+ -.|.-.|.+|.-|+. ..|+ .|-.-|.+=+++..| +.+++|..+ +|+++.++.+.
T Consensus 149 d-~gY~~TA~FL~wle~~~~~~-gfV~~LN~~m~~~~y---~~~~~~~~l---~G~~v~~LW~e 204 (205)
T PF04450_consen 149 D-DGYRTTARFLDWLEDNRYGK-GFVRRLNEAMRRDKY---SSDDFWKEL---LGKPVDELWAE 204 (205)
T ss_pred c-cccHHHHHHHHHHHhcccCc-cHHHHHHHHHhhCCC---CcHhHHHHH---HCcCHHHHHhh
Confidence 3 378889999999998 6664 355555555555555 556666554 58888887653
No 18
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.11 E-value=4.8 Score=47.92 Aligned_cols=198 Identities=19% Similarity=0.198 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHh-ccCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChhH
Q 003010 549 KDLAARLGYAIEMKQLSETDRFGILDDHFALCMA-RQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPEL 627 (858)
Q Consensus 549 ~~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~-g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~ 627 (858)
+.....|.+.+..+.++..++++++.=+..+++. -.--.+.+++|++.=.-..+...+.+++-.+..+.+......+..
T Consensus 356 ~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~ 435 (574)
T smart00638 356 PPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC 435 (574)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3455667777777889988999998877766643 333345555555543334566788888777777666543322211
Q ss_pred ----HHHHHHHHHHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhh
Q 003010 628 ----LDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRK 703 (858)
Q Consensus 628 ----~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (858)
...+..|+...+....++ + +..-+...+..++..|++..+.. +..++.+ ....|+.+|-
T Consensus 436 ~~~~~~~~~~~l~~~l~~~~~~-------~----~~~~~~~~LkaLGN~g~~~~i~~----l~~~l~~--~~~~~~~iR~ 498 (574)
T smart00638 436 PDFVLEELLKYLHELLQQAVSK-------G----DEEEIQLYLKALGNAGHPSSIKV----LEPYLEG--AEPLSTFIRL 498 (574)
T ss_pred ChhhHHHHHHHHHHHHHHHHhc-------C----CchheeeHHHhhhccCChhHHHH----HHHhcCC--CCCCCHHHHH
Confidence 234444444444433321 1 11235677888899999877644 4444543 3457888997
Q ss_pred HhhheeeeccccCCHHHHHHHHHHHHcCCCHHH-HHH-HHHHhCCCCCHHHHHHHHHHHhcC
Q 003010 704 AAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTR-ILSSLASCPDVNIVLEVLNFLLSS 763 (858)
Q Consensus 704 ~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~e-k~~-ll~aL~ct~d~~ll~~~L~~~l~~ 763 (858)
.+.-++.+.+..-....-+.++..|.+...+.| |.. ++..|-|-++...++++.+.+..+
T Consensus 499 ~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E 560 (574)
T smart00638 499 AAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKE 560 (574)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Confidence 544444332333456678889999998766555 544 444555559999999999887654
No 19
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=90.62 E-value=0.82 Score=46.00 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCc-----cccccccceeecccccc-cCCCChHHHHHHHHHHHHHHHHHH
Q 003010 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAG-----AMENYGLVTYRETALLY-DDQHSAAANKQRVATVVAHELAHQ 312 (858)
Q Consensus 239 ~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~g-----amEn~Gli~~~e~~ll~-~~~~~~~~~~~~~~~~iaHElaHq 312 (858)
.+.+.+....+.+ |.+.+++..+|.-+.+ .+...|-..+....+++ -+. ......+..++|||+.|.
T Consensus 4 ~i~~~~~~~~~~~----~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~~~~---~~~~~~l~~~iaHE~hH~ 76 (195)
T PF10026_consen 4 IIEEALEKSIELL----PGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFLLPN---DYSLEELPALIAHEYHHN 76 (195)
T ss_pred HHHHHHHHHHHHc----CCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEecCC---cccHHHHHHHHHHHHHHH
Confidence 3455555555555 4557888755532222 11223344444443333 222 223447889999999998
Q ss_pred HhcCccc----cCccchhHHhhhHHHHHHHHHHhhhC
Q 003010 313 WFGNLVT----MEWWTHLWLNEGFATWVSYLAADSLF 345 (858)
Q Consensus 313 WfGnlVt----~~~w~d~WLnEGfA~y~~~~~~~~~~ 345 (858)
+--..+. -..--|.-+.||+|.+++........
T Consensus 77 ~r~~~~~~~~~~~TLld~~I~EGlAe~f~~~~~g~~~ 113 (195)
T PF10026_consen 77 CRYEQIGWDPEDTTLLDSLIMEGLAEYFAEELYGEEY 113 (195)
T ss_pred HHHhccCCCCCCCCHHHHHHHhhHHHHHHHHHcCCCC
Confidence 6333222 11223567899999999977655544
No 20
>PRK04860 hypothetical protein; Provisional
Probab=85.77 E-value=1.4 Score=42.56 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc--ccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 003010 236 ALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME--NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (858)
Q Consensus 236 ~l~~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamE--n~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (858)
+...+...+..-+++||.|+|.|+..+-.- ...||+- .-+-|.++.. ++.+ .....+..+|+||+||.|
T Consensus 5 ~~~~~~~~~~~a~~~f~~~f~~p~~~f~~R--~rtaG~~~l~~~~I~~Np~--ll~~-----~~~~~l~~~v~HEl~H~~ 75 (160)
T PRK04860 5 VMRRLRECLAQANLYFKRTFPEPKVSYTQR--GTSAGTAWLQSNEIRLNPV--LLLE-----NQQAFIDEVVPHELAHLL 75 (160)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEeec--chhhcchhHhcCCeeeCHH--HHhh-----CcHHHHHhHHHHHHHHHH
Confidence 445667778888999999998876644322 2223332 2233444432 2221 134568889999999987
Q ss_pred h
Q 003010 314 F 314 (858)
Q Consensus 314 f 314 (858)
-
T Consensus 76 ~ 76 (160)
T PRK04860 76 V 76 (160)
T ss_pred H
Confidence 4
No 21
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=84.90 E-value=0.96 Score=48.65 Aligned_cols=40 Identities=35% Similarity=0.422 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhhh
Q 003010 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (858)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (858)
..++.+|-||+|||=+ ..+ +|.=+||+||++.+..++.+.
T Consensus 163 ~~LA~LIfHELaHq~~----Yv~--~dt~FNEsfAtfVe~~G~~~w 202 (337)
T PF10023_consen 163 GELARLIFHELAHQTL----YVK--GDTAFNESFATFVEREGARRW 202 (337)
T ss_pred hHHHHHHHHHHhhcee----ecC--CCchhhHHHHHHHHHHHHHHH
Confidence 3689999999999932 222 467789999999998877665
No 22
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=83.63 E-value=6.1 Score=39.91 Aligned_cols=95 Identities=21% Similarity=0.339 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 003010 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (858)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (858)
+.+.+.....+..|++.+|.++| ++.+=-.-. ..|....-|.|+|+-..+.+.+ .-+..+|+||+||.-
T Consensus 108 ~~~~~~l~~~~~~~~~~~~~~~~--~i~ir~~ks-rWGsc~~~~~I~ln~~L~~~P~--------~~idYVvvHEL~Hl~ 176 (205)
T PF01863_consen 108 KQAKEYLPERLKKYAKKLGLPPP--KIKIRDMKS-RWGSCSSKGNITLNWRLVMAPP--------EVIDYVVVHELCHLR 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcc--eEEEeehhh-ccccCCCCCcEEeecccccCCc--------cHHHHHHHHHHHHhc
Confidence 44556677778888888886543 333222222 2565555677787776433333 257889999999987
Q ss_pred hcCccccCccchhHHhhhHHHHHHHHHHhhhCcchhHHHHHH
Q 003010 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQFL 355 (858)
Q Consensus 314 fGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~~~ 355 (858)
.-| --...| ..+++..|+|......+
T Consensus 177 ~~n-----Hs~~Fw-----------~~v~~~~Pd~k~~~~~L 202 (205)
T PF01863_consen 177 HPN-----HSKRFW-----------ALVEKYMPDYKERRKWL 202 (205)
T ss_pred cCC-----CCHHHH-----------HHHHHHCcCHHHHHHHH
Confidence 654 333344 34567788876554433
No 23
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=80.93 E-value=1.7 Score=44.26 Aligned_cols=40 Identities=35% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhhh
Q 003010 299 QRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (858)
Q Consensus 299 ~~~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (858)
..++.+|-||+|||=|. |. +|.=+||+||+..+...+++.
T Consensus 195 ~~lA~LIFHELAHQk~Y--~~----~DtAFNEsFAtaVEt~Gvr~W 234 (376)
T COG4324 195 TYLASLIFHELAHQKIY--VN----NDTAFNESFATAVETSGVRKW 234 (376)
T ss_pred HHHHHHHHHHHhhheEe--ec----CcchHhHHHHHHHHHHhHHHH
Confidence 46899999999999653 11 466789999999998888764
No 24
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=80.01 E-value=1.8 Score=41.36 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=33.7
Q ss_pred HHHHHHH-HHhCCCCCCCCcceeecCCC--CCccccc-cccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 003010 242 KTLELYK-EYFAVPYSLPKLDMIAIPDF--AAGAMEN-YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (858)
Q Consensus 242 ~~l~~~e-~~fg~~yp~~kld~v~~P~~--~~gamEn-~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (858)
+.++.++ .+|+-++|.+++ ..-... .+|.-.. .+.|.++.. .........+..+|.||+||.+..
T Consensus 5 ~~~~~~n~~~F~~~l~~~~i--~w~~r~~~~~G~~~~~~~~I~ln~~-------l~~~~~~~~l~~~l~HEm~H~~~~ 73 (146)
T smart00731 5 QRLEDASLRVFGRKLPHPKV--VWNKRLRKTGGRCLLKSAEIRLNPK-------LLTENGRDRLRETLLHELCHAALY 73 (146)
T ss_pred HHHHHHHHHHHCCCCCCCEE--EEehhhhhhhHHhhcCCCEEEeCHH-------HHhhccHHHHHhhHHHHHHHHHHH
Confidence 3444455 889877886532 221211 1222221 233444433 111112346788999999999974
No 25
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=78.56 E-value=32 Score=41.35 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHh-ccCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhcc-----
Q 003010 550 DLAARLGYAIEMKQLSETDRFGILDDHFALCMA-RQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADA----- 623 (858)
Q Consensus 550 ~~w~~l~~~l~~~~i~~~~Ra~li~D~~~la~~-g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~----- 623 (858)
.....|.+.+..+.++..+.++++--+....+. -.--.+.+++|++.-.-..+..++.+++-.+..+.+.....
T Consensus 395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 345666677777788887777776555443321 11112223333333223456677777777777666554322
Q ss_pred -----ChhHHHHHHHHHHHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCC
Q 003010 624 -----RPELLDYLKQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLP 698 (858)
Q Consensus 624 -----~~~~~~~~~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~ 698 (858)
.......+..++.+.+..... ..+..-+...|..++..|++..+. .+..++.+ ....|
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~-----------~~~~~~~~~~LkaLgN~g~~~~i~----~l~~~i~~--~~~~~ 537 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVS-----------RGDEEEKIVYLKALGNLGHPESIP----VLLPYIEG--KEEVP 537 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHH-----------TT-HHHHHHHHHHHHHHT-GGGHH----HHHTTSTT--SS-S-
T ss_pred cccccchhhHHHHHHHHHHHHHHHhh-----------ccCHHHHHHHHHHhhccCCchhhH----HHHhHhhh--ccccc
Confidence 011112222222222221111 112345667788888899886554 44556655 22678
Q ss_pred chhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHH-HHHHH-HHhCCCCCHHHHHHHHHHHhc
Q 003010 699 PDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQE-KTRIL-SSLASCPDVNIVLEVLNFLLS 762 (858)
Q Consensus 699 ~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~e-k~~ll-~aL~ct~d~~ll~~~L~~~l~ 762 (858)
..+|.++.-++.+.+..-.+...+.++..|.+...+.| |...+ --|-|-++...++++.+.+-.
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Confidence 89997655454433334455778999999999877665 44433 444555899999999887654
No 26
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=71.50 E-value=5 Score=43.63 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhh
Q 003010 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (858)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~ 343 (858)
.-.++|||+|||= | ...|.=|+|+++++..+
T Consensus 196 ~P~T~~HElAHq~-G-----------~a~E~EANFiayLac~~ 226 (318)
T PF12725_consen 196 LPFTICHELAHQL-G-----------FASEDEANFIAYLACIN 226 (318)
T ss_pred ccHHHHHHHHHHh-C-----------CCCHHHHHHHHHHHHhc
Confidence 5578999999994 3 34899999999997654
No 27
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=65.11 E-value=14 Score=31.20 Aligned_cols=75 Identities=24% Similarity=0.304 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHH
Q 003010 659 ALLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKT 738 (858)
Q Consensus 659 ~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~ 738 (858)
...|..++..+|..++++.+....++ +.+ -++.+|..+..++.. -|+.+.++.|.+.+.++.+..-|.
T Consensus 14 ~~vr~~a~~~L~~~~~~~~~~~L~~~----l~d-----~~~~vr~~a~~aL~~---i~~~~~~~~L~~~l~~~~~~~vr~ 81 (88)
T PF13646_consen 14 PQVRAEAARALGELGDPEAIPALIEL----LKD-----EDPMVRRAAARALGR---IGDPEAIPALIKLLQDDDDEVVRE 81 (88)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHH----HTS-----SSHHHHHHHHHHHHC---CHHHHTHHHHHHHHTC-SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHH----HcC-----CCHHHHHHHHHHHHH---hCCHHHHHHHHHHHcCCCcHHHHH
Confidence 46778888888888887665554444 333 247888866554433 467778888999888877777788
Q ss_pred HHHHHhC
Q 003010 739 RILSSLA 745 (858)
Q Consensus 739 ~ll~aL~ 745 (858)
..+.|||
T Consensus 82 ~a~~aL~ 88 (88)
T PF13646_consen 82 AAAEALG 88 (88)
T ss_dssp HHHHHHH
T ss_pred HHHhhcC
Confidence 8888875
No 28
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=62.93 E-value=12 Score=35.82 Aligned_cols=74 Identities=26% Similarity=0.277 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCC--cceeecCCCC---CccccccccceeecccccccCCCC-hHHHHHHHHHH
Q 003010 231 NQGKFALNVAVKTLELYKEYFAVPYSLPK--LDMIAIPDFA---AGAMENYGLVTYRETALLYDDQHS-AAANKQRVATV 304 (858)
Q Consensus 231 ~~~~~~l~~~~~~l~~~e~~fg~~yp~~k--ld~v~~P~~~---~gamEn~Gli~~~e~~ll~~~~~~-~~~~~~~~~~~ 304 (858)
..+..|...+.++.+||.+.|| .-++.- ..+++.=.+. ..|.=+-.- +.|..... .......-..+
T Consensus 67 ~~~vdA~~~~~~v~d~y~~~~g-r~siD~~G~~~~~~Vhyg~~~~NAfW~g~~-------m~yGdG~~~~f~~~~~~lDV 138 (150)
T PF01447_consen 67 SAAVDAHYNAGKVYDYYKNVFG-RNSIDGNGMPIISRVHYGKNYNNAFWNGSQ-------MVYGDGDGQIFKPFASSLDV 138 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-S-STTSS-S-EEEEESESSSTT-EEE-SSS-------EEEE---SSSBS-GGG-HHH
T ss_pred cHHHHHHHhHHHHHHHHHHHHC-CCCcCCCCcEEEEEEeCCCCccCccccCCE-------EEEECCCCcccccCccccce
Confidence 4456677788999999999999 555542 3344332221 123222223 44433211 00011112468
Q ss_pred HHHHHHHH
Q 003010 305 VAHELAHQ 312 (858)
Q Consensus 305 iaHElaHq 312 (858)
+|||++|-
T Consensus 139 vaHEltHG 146 (150)
T PF01447_consen 139 VAHELTHG 146 (150)
T ss_dssp HHHHHHHH
T ss_pred eeeccccc
Confidence 99999996
No 29
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=62.45 E-value=53 Score=36.25 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=74.6
Q ss_pred hhhHHHHHHHHHHHHHhc-cCCHHHHHHHHHhcccCCcH--------HHHHHH----HHHHHHHHHHHhccChhHH-HHH
Q 003010 566 ETDRFGILDDHFALCMAR-QQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELL-DYL 631 (858)
Q Consensus 566 ~~~Ra~li~D~~~la~~g-~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~-~~~ 631 (858)
+.+|.++|+|+..-..++ -++|..-|.+++.-.+|-.+ .+|+.. ...|+.|...+... |+.. -.+
T Consensus 312 ~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~-p~l~nLl~ 390 (473)
T COG0362 312 PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDEN-PELANLLL 390 (473)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcC-cchhhhhc
Confidence 678999999996555444 57999999999887777554 455532 12344555555432 2221 122
Q ss_pred HHHHHHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhcCCCCCCCCchhhh
Q 003010 632 KQFFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRK 703 (858)
Q Consensus 632 ~~~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~ 703 (858)
..|..+++.. ....+|. ++..|...|.+ +|...|...|+.|.. ..+|++|.+
T Consensus 391 ~pyF~~~~~~---------------~~~~~R~-vV~~a~~~giP~P~~ssalsy~Dsyr~----~~lpaNLiQ 443 (473)
T COG0362 391 APYFKSILEE---------------YQQSLRR-VVAYAVEAGIPVPAFSSALSYYDSYRT----ARLPANLIQ 443 (473)
T ss_pred CHHHHHHHHH---------------HHHHHHH-HHHHHHhcCCCchHHHHHHHHHHHhhh----ccccHHHHH
Confidence 3333333331 2234555 45567888988 999999999999974 357888876
No 30
>PF03272 Enhancin: Viral enhancin protein; InterPro: IPR004954 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M60 (enhancin family, clan MA(E)). The active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The viral enhancin protein, or enhancing factor, is involved in disruption of the peritrophic membrane and fusion of nucleocapsids with mid-gut cells.; GO: 0016032 viral reproduction
Probab=59.76 E-value=2.3e+02 Score=34.96 Aligned_cols=129 Identities=15% Similarity=0.210 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCcc-ccCccchhHHhhhHHHHHHHHHHhhhC---cchhH-H--HHHHHHHHHHHhhhccCCCCceee
Q 003010 303 TVVAHELAHQWFGNLV-TMEWWTHLWLNEGFATWVSYLAADSLF---PEWKI-W--TQFLDECTEGLRLDGLAESHPIEV 375 (858)
Q Consensus 303 ~~iaHElaHqWfGnlV-t~~~w~d~WLnEGfA~y~~~~~~~~~~---~~~~~-~--~~~~~~~~~~~~~D~~~~~~pi~~ 375 (858)
..+-|||+|.+=+..+ .-..+.+.| |-=+|.++++..+.... ..|-+ . ...+...+.+.- + ...|
T Consensus 238 W~~LHEIgHgYd~~F~~n~~~~~EVW-nNI~~d~yQ~~~~~~~e~~~~~wly~~G~r~~~e~~i~~~i-~---~~~~--- 309 (775)
T PF03272_consen 238 WGALHEIGHGYDFGFTRNGTYLNEVW-NNILADRYQYTYMTQDERQTDGWLYDYGQRERVEREIIALI-D---NNKP--- 309 (775)
T ss_pred chhhhhhhhhcceeEeeCCcchhhhh-hhhhhhhhhhhhcChhhhhhccceecCCchHHHHHHHHHHH-h---cCCC---
Confidence 4689999999988877 444677888 88888888877654211 11111 0 011111111110 1 1112
Q ss_pred ecCCchhhhhccccc-cccchhHHHHHHHHhhCHHHHHHHHHHHHHHhccCC--CChHHHHHHHHhc-cCCCHHHHHHHh
Q 003010 376 EVNHTGEIDEIFDAI-SYRKGASVIRMLQNYLGAECFQRSLASYIKKYACSN--AKTEDLWAALEEG-SGEPVNKLMNSW 451 (858)
Q Consensus 376 ~~~~~~~i~~~f~~i-~Y~Kga~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~--~~~~df~~~l~~~-sg~~l~~~~~~W 451 (858)
|+.. .-.|=..+..||...-|++.|+..=+.|=+. .-.+ ...-.+++-+... ++.|+..+++-|
T Consensus 310 -----------~~~w~~r~rL~~l~~~m~~~~G~~~f~~~n~~~R~~-~~~~~~~~~~~i~d~l~~~~~~~D~~p~~~l~ 377 (775)
T PF03272_consen 310 -----------FDSWDLRERLIFLTWLMNTKAGKDAFTEMNQEYRQL-NTNGFNPNDHQIFDWLASLYSGYDFTPYFQLV 377 (775)
T ss_pred -----------cccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-ccCCCCcccccHHHHHHHhhcCCchHhHHHHh
Confidence 1111 1235455555888889999998877777654 2222 2223344455555 889999999988
No 31
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=59.61 E-value=14 Score=36.86 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhh
Q 003010 301 VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADS 343 (858)
Q Consensus 301 ~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~ 343 (858)
...++|||+.|-|.- ..-----+.++-||+++-+++.+++.
T Consensus 93 ~gsiLAHE~mHa~Lr--l~g~~~L~~~vEEGiCqvla~~wL~~ 133 (212)
T PF12315_consen 93 TGSILAHELMHAWLR--LNGFPNLSPEVEEGICQVLAYLWLES 133 (212)
T ss_pred HhhHHHHHHHHHHhc--ccCCCCCChHHHHHHHHHHHHHHHhh
Confidence 356899999999962 11111226789999999999987764
No 32
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=57.87 E-value=45 Score=29.18 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=33.8
Q ss_pred cCCCEEEEEeC-Cce--EeEEEEEeccCCCCccccCeeEEEecCCeEEEEEeCCCcCCceEEEEEEEEe
Q 003010 44 GDTKFIVLNAA-DLT--INNRSVSFTNKVSSKALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEG 109 (858)
Q Consensus 44 ~~~~~i~Lh~~-~l~--I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (858)
++...|.|... .++ ...+.+.+.++ ..+.......+.....+++.++.+|.+|.|+|.-.--+
T Consensus 17 ~~P~~v~L~F~e~v~~~~s~v~v~~~~g---~~v~~~~~~~~~~~~~~~~~l~~~l~~G~YtV~wrvvs 82 (97)
T PF04234_consen 17 AAPEEVTLTFSEPVEPGFSSVTVTDPDG---KRVDLGEPTVDGDGKTLTVPLPPPLPPGTYTVSWRVVS 82 (97)
T ss_dssp S--SSEEEEESS---CCC-EEEEEEEEE---TTSCTCEEEEEESTTEEEEEESS---SEEEEEEEEEEE
T ss_pred cCCCEEEEEeCCCCccCccEEEEEcCCC---ceeecCcceecCCceEEEEECCCCCCCceEEEEEEEEe
Confidence 34456666654 344 66777765332 23333344444466789999999999999987655443
No 33
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=55.83 E-value=34 Score=32.53 Aligned_cols=48 Identities=23% Similarity=0.436 Sum_probs=34.4
Q ss_pred ccccCeeEEEecCCeEEEEEeCCCcCCceEEEEEEEEeeeCCCCcceEE
Q 003010 72 KALEPTKVELVEADEILVLEFAETLPTGMGVLAIGFEGVLNDKMKGFYR 120 (858)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~i~l~~~L~~g~~~l~i~y~g~l~~~~~G~y~ 120 (858)
+.+....+..+.++..+.|.+++|++|| -+++|.+...-+....|.|.
T Consensus 75 ~~ipl~~v~~~~~~~~i~I~f~~PV~pG-~tv~V~l~~v~NP~~~G~Y~ 122 (146)
T PF10989_consen 75 ESIPLAEVEWDEDGRTITITFDEPVPPG-TTVTVVLSPVRNPRSGGTYQ 122 (146)
T ss_pred CccCceEEEEcCCCCEEEEEeCCCCCCC-CEEEEEEEeeeCCCCCCeEE
Confidence 3445567888999999999999999999 34444454444555567764
No 34
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=55.28 E-value=65 Score=33.08 Aligned_cols=93 Identities=22% Similarity=0.339 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 003010 234 KFALNVAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (858)
Q Consensus 234 ~~~l~~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (858)
+.+.+.....+..|...+|.+++--++. ..-. ..|+--.-|-|.+... +.. ....-+..+++||+||-=
T Consensus 119 ~~~~~~l~~~~~~~~~~l~~~~~~~~ik--~~k~-~WGScs~~~~i~~~~~-l~~-------~p~~~i~YVvvHELaHLk 187 (223)
T COG1451 119 EILREILEIRLKEYAKKLGVPPRAIKLK--NMKR-RWGSCSKAGEIRFNWR-LVM-------APEEVIDYVVVHELAHLK 187 (223)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccceeee--eccc-eeeeecCCCcEEeehh-hhc-------CCHHHHHHHHHHHHHHHh
Confidence 4566677778888999999776532222 1111 1233333333444333 111 123457889999999998
Q ss_pred hcCccccCccchhHHhhhHHHHHHHHHHhhhCcchhHHHH
Q 003010 314 FGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWTQ 353 (858)
Q Consensus 314 fGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~~~~~~~~ 353 (858)
..|- + ...| ..++..+|++.....
T Consensus 188 e~nH-s----~~Fw-----------~lv~~~~P~~~~~~~ 211 (223)
T COG1451 188 EKNH-S----KRFW-----------RLVEKYMPDYRAAKR 211 (223)
T ss_pred hhhc-c----HHHH-----------HHHHHHCCChHHHHH
Confidence 8872 2 2334 345677888766544
No 35
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=54.97 E-value=8.3 Score=39.45 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCccccccc----cceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCc
Q 003010 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYG----LVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNL 317 (858)
Q Consensus 242 ~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~G----li~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnl 317 (858)
+.++-+.+..|.+.|.+++-++-.|. ..|.-..+ -|..... ++.. .+...+..++|||++|-.-++.
T Consensus 35 ~~v~~l~~~~~~~~~~~~v~v~~~~~--~NA~~~g~~~~~~I~v~~~-ll~~------~~~~el~aVlaHElgH~~~~h~ 105 (226)
T PF01435_consen 35 RIVEELARRAGLGIPPPRVYVIDSPS--PNAFATGGGPRKRIVVTSG-LLES------LSEDELAAVLAHELGHIKHRHI 105 (226)
T ss_dssp HHHHHHHHHHHCTSS--EEEEE--SS--EEEEEETTTC--EEEEEHH-HHHH------SSHHHHHHHHHHHHHHHHTTHC
T ss_pred HHHHHHHHHhcCCCCCCeEEEEcCCC--CcEEEEccCCCcEEEEeCh-hhhc------ccHHHHHHHHHHHHHHHHcCCc
Confidence 33333344445566655554444444 33332222 1444444 3321 2345789999999999998765
Q ss_pred ccc
Q 003010 318 VTM 320 (858)
Q Consensus 318 Vt~ 320 (858)
...
T Consensus 106 ~~~ 108 (226)
T PF01435_consen 106 LKS 108 (226)
T ss_dssp CCC
T ss_pred chH
Confidence 544
No 36
>PRK04351 hypothetical protein; Provisional
Probab=53.58 E-value=13 Score=35.40 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q 003010 298 KQRVATVVAHELAHQ 312 (858)
Q Consensus 298 ~~~~~~~iaHElaHq 312 (858)
...+..+|+||++|-
T Consensus 58 ~~~l~~vv~HElcH~ 72 (149)
T PRK04351 58 LEELIGIIKHELCHY 72 (149)
T ss_pred HHHHHhhHHHHHHHH
Confidence 457889999999995
No 37
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=50.96 E-value=17 Score=40.90 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=32.9
Q ss_pred CCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHH
Q 003010 256 SLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQW 313 (858)
Q Consensus 256 p~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqW 313 (858)
|-..++++.|-|-...|.-.+|--++--+.++...+ +...++.|||||++|-=
T Consensus 90 ~~~~f~f~lV~d~~iNAFA~~Gg~v~vntGLll~ae-----~esElagViAHEigHv~ 142 (484)
T COG4783 90 VKTPFTFFLVNDDSINAFATPGGYVVVNTGLLLTAE-----NESELAGVIAHEIGHVA 142 (484)
T ss_pred CCCCeEEEEecCCccchhhcCCceEEEehHHHHhcC-----CHHHHHHHHHHHHHHHh
Confidence 445578888877655666665544433333333322 23469999999999953
No 38
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=48.11 E-value=17 Score=32.52 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhcCcc
Q 003010 300 RVATVVAHELAHQWFGNLV 318 (858)
Q Consensus 300 ~~~~~iaHElaHqWfGnlV 318 (858)
+...+++||++|.+++..-
T Consensus 41 ~~~f~laHELgH~~~~~~~ 59 (122)
T PF06114_consen 41 RQRFTLAHELGHILLHHGD 59 (122)
T ss_dssp HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhhhcc
Confidence 3467999999999987654
No 39
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=46.97 E-value=22 Score=39.96 Aligned_cols=111 Identities=23% Similarity=0.258 Sum_probs=62.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhCCCCCCC--CcceeecCCCCCccccccccceeecccccccCCCChH-HHHHHHHH
Q 003010 227 VGKANQGKFALNVAVKTLELYKEYFAVPYSLP--KLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAA-ANKQRVAT 303 (858)
Q Consensus 227 ~~~~~~~~~~l~~~~~~l~~~e~~fg~~yp~~--kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~-~~~~~~~~ 303 (858)
++....+..|-..+.+..+||.+.||.. -+. -+.++..-.| | -++.-....-..++|.+..... .....-..
T Consensus 265 ~~~~~a~~dAh~~~g~vyD~yk~~fgr~-S~Dn~g~~l~s~vHy--G--~~ynNAfWdG~qMvyGDGDG~~f~~~S~sLD 339 (507)
T COG3227 265 PSSDEAAVDAHYNAGKVYDYYKNTFGRN-SYDNNGMPLVSTVHY--G--KNYNNAFWDGDQMVYGDGDGSFFTPFSGSLD 339 (507)
T ss_pred ccchhhhHHHHhhcchHHHHHHHHhccc-CcCCCCCceEEEEee--c--cccccccccCceeEeecCCcceecccccccc
Confidence 3444455667778899999999999932 332 3444443333 1 1222222333445554432111 01111246
Q ss_pred HHHHHHHHH---HhcCccccCccchhHHhhhHHHHHHHHHHhhh
Q 003010 304 VVAHELAHQ---WFGNLVTMEWWTHLWLNEGFATWVSYLAADSL 344 (858)
Q Consensus 304 ~iaHElaHq---WfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~ 344 (858)
++||||.|. .--+|+.-..-. =|||+|+.-+.-.+....
T Consensus 340 VvAHElTHGvtq~tA~L~Y~~qsG--ALNEsfSDvfG~~i~~~~ 381 (507)
T COG3227 340 VVAHELTHGVTQQTAGLIYRGQSG--ALNESFSDVFGTLIEQYV 381 (507)
T ss_pred eehhhhcchhhhhccCceecCCCC--chhhHHHHHHHHHHHHHh
Confidence 899999994 445666554332 589999999985544333
No 40
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=44.24 E-value=15 Score=35.35 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003010 297 NKQRVATVVAHELAHQWF 314 (858)
Q Consensus 297 ~~~~~~~~iaHElaHqWf 314 (858)
....+..+|.||++|.|.
T Consensus 56 ~~~~~~~tL~HEm~H~~~ 73 (157)
T PF10263_consen 56 PEEELIDTLLHEMAHAAA 73 (157)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345788999999999997
No 41
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=43.28 E-value=35 Score=36.68 Aligned_cols=65 Identities=26% Similarity=0.337 Sum_probs=40.6
Q ss_pred HHHHhCCCCCCCCcceeecCCCCCcccccc---ccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcCccc
Q 003010 247 YKEYFAVPYSLPKLDMIAIPDFAAGAMENY---GLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (858)
Q Consensus 247 ~e~~fg~~yp~~kld~v~~P~~~~gamEn~---Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (858)
....-|++ +.+++.++-.|...+-++... |.|...+. ++ +- -+...+..+++||++|.=-++.+.
T Consensus 108 ~a~~~~~~-~~~~v~i~~~~~~NAFa~g~~~~~~~V~vt~g-Ll-~~-----l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 108 LARQAGIP-HMPEVYILETPQPNAFALGGGPKNGRVVVTTG-LL-DL-----LNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HHHHCCCC-CCCeeEEecCCCccceecCCCCCCeeEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhcccHHH
Confidence 34444533 246777776666555555553 67776665 33 21 134578999999999988776554
No 42
>PRK05457 heat shock protein HtpX; Provisional
Probab=42.76 E-value=42 Score=35.93 Aligned_cols=68 Identities=26% Similarity=0.365 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcc---ccccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGA---MENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~ga---mEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (858)
..+.++-+.+..|+| .|++-++-.+...+-+ -.+-+.|.+... ++- .-+.+++..++|||++|.=-|+
T Consensus 79 L~~~v~~la~~~g~p--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~------~L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 79 LVETVARQARQAGIG--MPEVAIYHSPEINAFATGASKNNSLVAVSTG-LLQ------NMSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred HHHHHHHHHHhCCCC--CCCEEEEeCCCceEEEecCCCCCeEEEeehH-Hhh------hCCHHHHHHHHHHHHHHHHcCC
Confidence 345566667777764 6777666443322222 122234444443 221 1134578999999999987665
No 43
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.71 E-value=56 Score=38.78 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhhcCCCCCCCCchhhh-HhhheeeeccccCCHHHHHHHHHHHHc
Q 003010 653 GESHLDALLRGEIFTALAL-LGHKETLNEASKRFHAFLADRTTPLLPPDIRK-AAYVAVMQKVSASDRSGYESLLRVYRE 730 (858)
Q Consensus 653 ~~~~~~~~lr~~i~~~ac~-~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~-~vy~~~~~~~~~g~~~~~~~l~~~y~~ 730 (858)
.|+.-.+.+|.+.++.||- +|.++ .|..+-++.+.+ -+|-+|. -+|...+.-+-.|+......|+.-.-+
T Consensus 494 ~ETQHeki~RGl~vGiaL~~ygrqe---~Ad~lI~el~~d-----kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs 565 (929)
T KOG2062|consen 494 QETQHEKIIRGLAVGIALVVYGRQE---DADPLIKELLRD-----KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS 565 (929)
T ss_pred hhhhHHHHHHHHHHhHHHHHhhhhh---hhHHHHHHHhcC-----CchhhhhhhHHHHHHHHhccCchhhHHHhhccccc
Confidence 4666778999999999985 45543 566666666644 2566774 455544444446788888888887665
Q ss_pred CCCHHHHHHHHHHhC--CCCCHHHHHHHHHHHhcC---ccccccceeeee--eccccHHHHHHHH
Q 003010 731 TDLSQEKTRILSSLA--SCPDVNIVLEVLNFLLSS---EVRSQDAVYGLA--VSIEGRETAWKWL 788 (858)
Q Consensus 731 s~~~~ek~~ll~aL~--ct~d~~ll~~~L~~~l~~---~ir~qd~~~~~~--vs~~g~~~aw~fl 788 (858)
..+.+-|+...-||| |++||+.+-++++++-.. .||.--.. ++. .+..|...|.+-+
T Consensus 566 D~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~-ALGIaCAGtG~~eAi~lL 629 (929)
T KOG2062|consen 566 DVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAM-ALGIACAGTGLKEAINLL 629 (929)
T ss_pred ccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHH-HHhhhhcCCCcHHHHHHH
Confidence 556667887777776 789999999998876432 46543222 222 4444666666544
No 44
>PRK03982 heat shock protein HtpX; Provisional
Probab=40.60 E-value=60 Score=34.77 Aligned_cols=66 Identities=26% Similarity=0.390 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc-----cccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN-----YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn-----~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (858)
..+.++-+.+..|+| .|++-++ |+-...|+-. -|.|...+. ++ +. -+..++..++|||++|-=-
T Consensus 70 L~~~v~~la~~~g~~--~p~v~v~--~~~~~NAfa~G~~~~~~~V~vt~g-Ll-~~-----l~~~El~AVlAHElgHi~~ 138 (288)
T PRK03982 70 LYRIVERLAERANIP--KPKVAIV--PTQTPNAFATGRDPKHAVVAVTEG-IL-NL-----LNEDELEGVIAHELTHIKN 138 (288)
T ss_pred HHHHHHHHHHHcCCC--CCeEEEE--eCCCcceEEeccCCCCeEEEeehH-HH-hh-----CCHHHHHHHHHHHHHHHHc
Confidence 455556666667765 4455444 3322233221 234444443 22 11 1345799999999999765
Q ss_pred cC
Q 003010 315 GN 316 (858)
Q Consensus 315 Gn 316 (858)
++
T Consensus 139 ~h 140 (288)
T PRK03982 139 RD 140 (288)
T ss_pred CC
Confidence 54
No 45
>PRK01345 heat shock protein HtpX; Provisional
Probab=40.05 E-value=49 Score=35.98 Aligned_cols=68 Identities=28% Similarity=0.273 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc---cccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn---~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (858)
..++++-+.+..|+| .|++-++-.+...+-+... -+.|.+.+. |+-. .+..++..++|||++|.=-++
T Consensus 69 L~~~v~~La~~agi~--~p~v~vid~~~~NAFa~G~~~~~~~V~vt~g-LL~~------L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 69 LYRMVRDLARRAGLP--MPKVYIIDNPQPNAFATGRNPENAAVAATTG-LLQR------LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEcCCCcceEEecCCCCCeEEEechH-HHhh------CCHHHHHHHHHHHHHHHHcCC
Confidence 456666777778876 4565444333222222221 123444443 3221 123579999999999986554
No 46
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=40.00 E-value=5.8e+02 Score=31.65 Aligned_cols=225 Identities=15% Similarity=0.109 Sum_probs=114.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHhcCCccCC
Q 003010 573 LDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLGWDSKP 652 (858)
Q Consensus 573 i~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg~~~~~ 652 (858)
+.-.-+++..+.++....-.+++.|-+|.+-.-|...-+.+- ++.+..++..-...+- .+
T Consensus 106 l~~l~aL~~~~~~p~~~ivsllkalfq~~~vqs~aq~~R~~~-------------~~Il~~~l~~~~~~l~-s~------ 165 (1030)
T KOG1967|consen 106 LGGLKALILMSKLPDNFIVSLLKALFQEVQVQSLAQKERLLQ-------------YEILEWFLDYRLEFLK-SL------ 165 (1030)
T ss_pred HHHHHHHHHhhcCCchHHHHHHHHHHHhcchHHHHHHHHhhH-------------HHHHHHHHHHHHHHHh-cc------
Confidence 333445556666777777777777777777666665544431 1222222222111100 00
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhc-CCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcC
Q 003010 653 GESHLDALLRGEIFTALALLGHKETLNEASKRFHAFLA-DRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRET 731 (858)
Q Consensus 653 ~~~~~~~~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~-~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s 731 (858)
+. ..+-..+.+.+-.=.++.|+--+-.+++.... +..-.+.-.|+-+.++|++=...+.--.+... +
T Consensus 166 ~~----D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~-I------- 233 (1030)
T KOG1967|consen 166 GP----DFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTIT-I------- 233 (1030)
T ss_pred cc----hHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCccc-c-------
Confidence 00 01112223333333567788777778877764 21112234577788888775433332222111 1
Q ss_pred CCHHHHHHHHHHhCCCCC--HHHHHHHHHHHhcCccc-cccceeeee-eccc-cHHHHHHHHHHHHHHHHHHhCCCcchh
Q 003010 732 DLSQEKTRILSSLASCPD--VNIVLEVLNFLLSSEVR-SQDAVYGLA-VSIE-GRETAWKWLKDNWDHISKTWGSGFLIT 806 (858)
Q Consensus 732 ~~~~ek~~ll~aL~ct~d--~~ll~~~L~~~l~~~ir-~qd~~~~~~-vs~~-g~~~aw~fl~~n~~~i~~~~~~~~~l~ 806 (858)
+..+-+..+..||++++- |.++--+++.+-+...+ +-|....+. .... |.+...++...+|..|..-++++.. .
T Consensus 234 ~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~s~s-e 312 (1030)
T KOG1967|consen 234 RREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQSES-E 312 (1030)
T ss_pred cHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHccccc-c
Confidence 112446778888887764 44455555554333222 225555555 3444 6666666779999999987765211 1
Q ss_pred HHHHHhccccCCHHHHHHHHhhhc
Q 003010 807 RFISSIVSPVCCLHLSNYVFRFST 830 (858)
Q Consensus 807 ~~i~~~~~~~~t~~~~~~v~~F~~ 830 (858)
++=+.....+++.++-..+.++++
T Consensus 313 ~~e~~~Ln~lnk~a~~~~~~~y~~ 336 (1030)
T KOG1967|consen 313 TIENIGLNPLNKDAMSLYVSRYPQ 336 (1030)
T ss_pred cccccccCccchhHHHHHHhhccc
Confidence 111222355566666666665554
No 47
>PRK03001 M48 family peptidase; Provisional
Probab=38.36 E-value=44 Score=35.74 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc-----ccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHh
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME-----NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWF 314 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamE-----n~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWf 314 (858)
..+.++-+.+..|+|. |++-++ ++-...|+- +.+.|...+. ++ +. -+.+++..++|||++|-=-
T Consensus 69 L~~~v~~la~~~g~~~--p~v~v~--~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHi~~ 137 (283)
T PRK03001 69 FYRMVRELAQRAGLPM--PKVYLI--NEDQPNAFATGRNPEHAAVAATTG-IL-RV-----LSEREIRGVMAHELAHVKH 137 (283)
T ss_pred HHHHHHHHHHHcCCCC--CeEEEe--cCCCcceEEecCCCCCeEEEecHH-HH-hh-----CCHHHHHHHHHHHHHHHhC
Confidence 4556666677778664 454433 332122211 1233444443 22 11 1345799999999999755
Q ss_pred cC
Q 003010 315 GN 316 (858)
Q Consensus 315 Gn 316 (858)
++
T Consensus 138 ~h 139 (283)
T PRK03001 138 RD 139 (283)
T ss_pred CC
Confidence 43
No 48
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=37.74 E-value=22 Score=35.40 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 003010 295 AANKQRVATVVAHELAHQWFGN 316 (858)
Q Consensus 295 ~~~~~~~~~~iaHElaHqWfGn 316 (858)
.-....+..++.|||||.++|+
T Consensus 76 fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 76 FLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred EeeHHHHHHHHHHHHHhcccCC
Confidence 3445678999999999999887
No 49
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=37.00 E-value=93 Score=28.63 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=35.8
Q ss_pred CEEEEEeCC---ceEeEEEEEeccCCCCccccCeeEEEecCC-eEEEEEeCCCcCCceEEEEEEEEe
Q 003010 47 KFIVLNAAD---LTINNRSVSFTNKVSSKALEPTKVELVEAD-EILVLEFAETLPTGMGVLAIGFEG 109 (858)
Q Consensus 47 ~~i~Lh~~~---l~I~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~l~~~L~~g~~~l~i~y~g 109 (858)
..|.|+..+ ..+..+.+.+.++ ..+.......+..+ ..+.|.++.+|++|.|+|.-+..+
T Consensus 47 ~~i~L~Fse~ve~~fs~~~l~~~d~---~~v~t~~~~~~~~~~~~l~v~l~~~L~aG~Y~v~WrvvS 110 (127)
T COG2372 47 AAITLEFSEGVEPGFSGAKLTGPDG---EEVATAGTKLDEQNHTQLEVPLPQPLKAGVYTVDWRVVS 110 (127)
T ss_pred eeEEEecCCccCCCcceeEEECCCC---CccccCcccccccCCcEEEecCcccCCCCcEEEEEEEEe
Confidence 456666542 3345666654322 12222233333333 459999999999999998877654
No 50
>PRK02870 heat shock protein HtpX; Provisional
Probab=36.75 E-value=72 Score=34.97 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---ccccceeecccccccCCCChHHHHHHHHHHHHHHHHHH
Q 003010 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQ 312 (858)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamE---n~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHq 312 (858)
.++++-+....|+|+ .|++-++--+...+-++. .-|.|.+.+. ++ +. -+..++..++|||++|-
T Consensus 118 ~~~ve~La~~ag~p~-~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~G-LL-~~-----L~~dEL~aVlAHELgHi 184 (336)
T PRK02870 118 YNVVEELLVAAGLRF-MPKVYIIDAPYMNAFASGYSEKSAMVAITTG-LL-EK-----LDRDELQAVMAHELSHI 184 (336)
T ss_pred HHHHHHHHHHcCCCC-CCeEEEEcCCCCceEEecCCCCCcEEEEehH-Hh-hh-----CCHHHHHHHHHHHHHHH
Confidence 344455555567553 345544433322222321 2245555544 32 11 13457899999999996
No 51
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.40 E-value=5.2e+02 Score=32.23 Aligned_cols=137 Identities=15% Similarity=0.102 Sum_probs=75.7
Q ss_pred ChhhHHHHHHHHHHHHHhccCC-HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHH
Q 003010 565 SETDRFGILDDHFALCMARQQT-LTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSA 643 (858)
Q Consensus 565 ~~~~Ra~li~D~~~la~~g~l~-~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 643 (858)
|...|.||-.=+-....+.+.. ...+++-++++-+-.+...|..++-.|..+.+.++....+.+..+..-+..++..++
T Consensus 102 p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il 181 (1010)
T KOG1991|consen 102 PELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDIL 181 (1010)
T ss_pred chHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 6777877654443444444442 245667666666667888899999999888877652222333444444444444333
Q ss_pred HhcCCccCCCCCHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHhhc-------CC---CCCCCCchhhh
Q 003010 644 EKLGWDSKPGESHLDALLRGEIFT---ALALLGHKETLNEASKRFHAFLA-------DR---TTPLLPPDIRK 703 (858)
Q Consensus 644 ~~lg~~~~~~~~~~~~~lr~~i~~---~ac~~g~~~c~~~A~~~f~~~~~-------~~---~~~~i~~~lr~ 703 (858)
+.. ..-...++.....+..+|++ .+|.+..+.-+ .+.+.|..|+. .+ ..-.++|+.|+
T Consensus 182 ~~~-~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L-~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~ 252 (1010)
T KOG1991|consen 182 QIF-NGLLSQESYQSVELQKLILKIFKSLIYYELPLEL-SAPETFTSWMELFLSILNRPVPVEVLSLDPEDRS 252 (1010)
T ss_pred HHH-HhhccccchHHHHHHHHHHHHHHHHHHHhCCHHh-hCchhHHHHHHHHHHHHcCCCChhcccCChhhcc
Confidence 332 11112234444556666655 56666665433 34556666652 11 12357788886
No 52
>PRK03072 heat shock protein HtpX; Provisional
Probab=36.24 E-value=67 Score=34.45 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcceeecCCCCCccc---cccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 003010 239 VAVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (858)
Q Consensus 239 ~~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gam---En~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (858)
...+.++-+.+..|+| .|++-++-.+...+-+. ..-+.+..... ++ +. -+.+++..++|||++|-=-|
T Consensus 71 ~L~~~v~~la~~~g~p--~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~g-Ll-~~-----l~~~El~aVlAHElgHi~~~ 141 (288)
T PRK03072 71 AMYRIVRELSTAARQP--MPRLYISPTAAPNAFATGRNPRNAAVCCTEG-IL-QI-----LNERELRGVLGHELSHVYNR 141 (288)
T ss_pred HHHHHHHHHHHHcCCC--CCCEEEecCCCCceEEecCCCCCcEEEecHH-HH-Hh-----CCHHHHHHHHHHHHHHHhcC
Confidence 3456667777777864 56765554333222111 11112333322 32 11 13457899999999996554
Q ss_pred C
Q 003010 316 N 316 (858)
Q Consensus 316 n 316 (858)
+
T Consensus 142 d 142 (288)
T PRK03072 142 D 142 (288)
T ss_pred C
Confidence 4
No 53
>PRK04897 heat shock protein HtpX; Provisional
Probab=34.41 E-value=48 Score=35.72 Aligned_cols=68 Identities=22% Similarity=0.243 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCccc---cccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAM---ENYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gam---En~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (858)
..+.++-+.+..|+| .|++-++--+...+-+. .+-+.|.+... ++- .-+.+++..++|||++|-=-|+
T Consensus 82 L~~~v~~la~~~gip--~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~g-Ll~------~l~~~El~aVlAHElgHi~~~d 152 (298)
T PRK04897 82 LWHIVEDMAMVAQIP--MPRVFIIDDPSPNAFATGSSPKNAAVAVTTG-LLA------IMNREELEGVIGHEISHIRNYD 152 (298)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEecCCCCceEEeccCCCCcEEEeehH-HHh------hCCHHHHHHHHHHHHHHHhcCC
Confidence 456666667777764 56765554332222121 12234444432 221 1124578999999999965444
No 54
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=33.66 E-value=28 Score=30.66 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 003010 300 RVATVVAHELAHQW 313 (858)
Q Consensus 300 ~~~~~iaHElaHqW 313 (858)
....+++||++|-|
T Consensus 78 GC~~TL~HEL~H~W 91 (141)
T PHA02456 78 GCRDTLAHELNHAW 91 (141)
T ss_pred chHHHHHHHHHHHH
Confidence 46678999999999
No 55
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=33.61 E-value=27 Score=34.28 Aligned_cols=13 Identities=46% Similarity=0.527 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 003010 301 VATVVAHELAHQW 313 (858)
Q Consensus 301 ~~~~iaHElaHqW 313 (858)
-..++|||++||+
T Consensus 111 ~~~~~aHElGH~l 123 (173)
T PF13574_consen 111 GIDTFAHELGHQL 123 (173)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehhhhHhhc
Confidence 4567999999998
No 56
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=32.60 E-value=1.3e+02 Score=29.83 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHH
Q 003010 300 RVATVVAHELAHQW 313 (858)
Q Consensus 300 ~~~~~iaHElaHqW 313 (858)
..+.++|||++|+.
T Consensus 130 ~~a~~~AHElGH~l 143 (194)
T cd04269 130 LFAVTMAHELGHNL 143 (194)
T ss_pred HHHHHHHHHHHhhc
Confidence 46789999999996
No 57
>PRK09687 putative lyase; Provisional
Probab=30.99 E-value=6.7e+02 Score=26.65 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHH
Q 003010 660 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTR 739 (858)
Q Consensus 660 ~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ 739 (858)
..|..+....+..|++..+.... ..+++ -++++|.+.-.++.. +..++...-+.|.... ...+..-|..
T Consensus 143 ~VR~~a~~aLg~~~~~~ai~~L~----~~L~d-----~~~~VR~~A~~aLg~-~~~~~~~~~~~L~~~L-~D~~~~VR~~ 211 (280)
T PRK09687 143 NVRFAVAFALSVINDEAAIPLLI----NLLKD-----PNGDVRNWAAFALNS-NKYDNPDIREAFVAML-QDKNEEIRIE 211 (280)
T ss_pred HHHHHHHHHHhccCCHHHHHHHH----HHhcC-----CCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHh-cCCChHHHHH
Confidence 57777777778888876665444 33433 245788643322221 2334556666777766 4556788999
Q ss_pred HHHHhCCCCCHHHHHHHHHHHhcCc
Q 003010 740 ILSSLASCPDVNIVLEVLNFLLSSE 764 (858)
Q Consensus 740 ll~aL~ct~d~~ll~~~L~~~l~~~ 764 (858)
.+.|||...++..+..+++.+-++.
T Consensus 212 A~~aLg~~~~~~av~~Li~~L~~~~ 236 (280)
T PRK09687 212 AIIGLALRKDKRVLSVLIKELKKGT 236 (280)
T ss_pred HHHHHHccCChhHHHHHHHHHcCCc
Confidence 9999999999999988888765443
No 58
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=30.44 E-value=2.2e+02 Score=31.10 Aligned_cols=116 Identities=17% Similarity=0.255 Sum_probs=69.7
Q ss_pred hHHHHHHHHH-HHHHhccCCHHHHHHHHHhcccCCcH--------HHHHHH----HHHHHHHHHHHhccChhHHH-HHHH
Q 003010 568 DRFGILDDHF-ALCMARQQTLTSLLTLMASYSEETEY--------TVLSNL----ITISYKIGRIAADARPELLD-YLKQ 633 (858)
Q Consensus 568 ~Ra~li~D~~-~la~~g~l~~~~~l~l~~~l~~E~~~--------~~w~~~----~~~l~~l~~~~~~~~~~~~~-~~~~ 633 (858)
++-|+|||+- +|.-+..++|..-|.|++--++|..+ .+|+-. ...|..|...+... |+..+ .+..
T Consensus 319 ~k~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~-p~l~nll~d~ 397 (487)
T KOG2653|consen 319 DKKQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRN-PDLANLLLDP 397 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcC-ccHhhhccCH
Confidence 4889999984 45556678999999998876665442 455421 11234455555432 22211 1222
Q ss_pred HHHHHhHHHHHhcCCccCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhhcCCCCCCCCchhhhH
Q 003010 634 FFISLFQNSAEKLGWDSKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHAFLADRTTPLLPPDIRKA 704 (858)
Q Consensus 634 ~~~~l~~~~~~~lg~~~~~~~~~~~~~lr~~i~~~ac~~g~~-~c~~~A~~~f~~~~~~~~~~~i~~~lr~~ 704 (858)
|..+.+... ....|. ++..|...|.+ +|...|...|+-|.. ..+|++|.++
T Consensus 398 fF~~~v~~~---------------q~~wr~-vV~~a~~~gIptP~~st~Lafydgyr~----e~lpaNllQA 449 (487)
T KOG2653|consen 398 FFAKAVEEA---------------QDSWRR-VVALAVEAGIPTPAFSTALAFYDGYRS----ERLPANLLQA 449 (487)
T ss_pred HHHHHHHHH---------------HHHHHH-HHHHHHhcCCCChhHHHHHHHHhhhhh----hcCcHHHHHH
Confidence 222222211 122333 45567788888 899999999998863 4588988774
No 59
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=29.70 E-value=1.3e+02 Score=24.70 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=39.2
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHHHhccCCCChHHHHHHHHhccCC
Q 003010 396 ASVIRMLQNYLGAECFQRSLASYIKKYACSNAKTEDLWAALEEGSGE 442 (858)
Q Consensus 396 a~vl~mL~~~lG~~~F~~~l~~yl~~~~~~~~~~~df~~~l~~~sg~ 442 (858)
+.++.+|...++.+.+ ..|..++++++-+-++-++|.+.+....|.
T Consensus 12 ~~L~~~l~~~l~~~~~-~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 12 PMLFSALSKHLPPSKM-DLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHHCCHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 5789999999998885 456777788888999999999999998883
No 60
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=29.45 E-value=3.3e+02 Score=29.79 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC-ccccccc
Q 003010 717 DRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS-EVRSQDA 770 (858)
Q Consensus 717 ~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~-~ir~qd~ 770 (858)
+++--+.+.++...+.+......+++|||++....+....++.++.. .....|+
T Consensus 213 ~~~l~~~l~~~~~~~~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 213 PDKLAEALLERLEQAPDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHH
Confidence 45567788888888878888999999999999998888878888765 3344443
No 61
>PRK01265 heat shock protein HtpX; Provisional
Probab=29.44 E-value=89 Score=34.07 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhCCCCCCCCcceeecCCCCCccccc---cccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhc
Q 003010 241 VKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMEN---YGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFG 315 (858)
Q Consensus 241 ~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn---~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfG 315 (858)
.+.++-+.+..|+| .|++-++-.+...+-+... -+-|...+. ++ +. -+...+..++|||++|-=-+
T Consensus 86 ~~~v~~la~~~g~~--~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~g-Ll-~~-----l~~~El~aVlAHElgHik~~ 154 (324)
T PRK01265 86 YSIVAEVAKYNGIR--VPKVYIADVPFPNAFAYGSPIAGKRIAITLP-LL-KI-----LNRDEIKAVAGHELGHLKHR 154 (324)
T ss_pred HHHHHHHHHHcCCC--CCeEEEecCCCCCeEEeccCCCCCEEEEehH-HH-hh-----CCHHHHHHHHHHHHHHHHcc
Confidence 45566666677764 5666555433221112111 133444433 22 11 13457899999999995443
No 62
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=29.27 E-value=2e+02 Score=27.44 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=25.3
Q ss_pred eEEEEEEcCCch---hhHHHHHHHHHHHHHHHHHHhCCCC
Q 003010 219 IKVRVYCQVGKA---NQGKFALNVAVKTLELYKEYFAVPY 255 (858)
Q Consensus 219 ~~v~v~~~~~~~---~~~~~~l~~~~~~l~~~e~~fg~~y 255 (858)
.++++|..+... .......+.+.++++..+++.++.+
T Consensus 2 ~~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F 41 (156)
T cd04279 2 SPIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKF 41 (156)
T ss_pred CCeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEE
Confidence 467888877643 2345567788888988888865444
No 63
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=29.22 E-value=1.7e+02 Score=32.21 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=49.3
Q ss_pred HHHHHHHHHhCCCCCCCCcceeecCCCCCccccccccceeecccccccCCCChHHHHHHHHHHHHHHH-HH---------
Q 003010 242 KTLELYKEYFAVPYSLPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRVATVVAHEL-AH--------- 311 (858)
Q Consensus 242 ~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamEn~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHEl-aH--------- 311 (858)
.+=++..+|++ .. --++.+...++..++||-.-+-+.++.+.. .....+..++.||+ .|
T Consensus 117 ~~~~~~~~y~~-~~-~~~~~V~~sddl~a~A~v~~~~l~I~~~~~---------fs~~~l~~L~~HEigvH~lt~~Ng~~ 185 (349)
T PF08014_consen 117 RLQERLKKYFG-KE-GFEVKVELSDDLLARAMVSGDRLKINKNAM---------FSERDLEALLHHEIGVHLLTTLNGRA 185 (349)
T ss_pred HHHHHHHHHhc-cc-CceEEEEEcCCcchhhcccCCeeEEcCCCC---------cCHHHHHHHHHHhhhhhhcccccccc
Confidence 33445566666 22 225556666788788876655555554421 23456888999999 45
Q ss_pred ---HHhcCccccCccchhHHhhhHHHHHHHHH
Q 003010 312 ---QWFGNLVTMEWWTHLWLNEGFATWVSYLA 340 (858)
Q Consensus 312 ---qWfGnlVt~~~w~d~WLnEGfA~y~~~~~ 340 (858)
.|++...-+ ..=..||+|.+.+++.
T Consensus 186 QPl~~l~~Glp~----~~~TQEGLAvl~E~l~ 213 (349)
T PF08014_consen 186 QPLKILSLGLPG----YTPTQEGLAVLSEYLS 213 (349)
T ss_pred CCcHHhCCCCCC----CCCCchHHHHHHHHHh
Confidence 233322111 1123699999999764
No 64
>PLN03218 maturation of RBCL 1; Provisional
Probab=28.82 E-value=1.1e+03 Score=30.31 Aligned_cols=154 Identities=10% Similarity=0.105 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCCCCCCCCchhhhHhhheeeec-cccCCHHHHHHHHHHHHcC---CCHH
Q 003010 660 LLRGEIFTALALLGHKETLNEASKRFHAFLADRTTPLLPPDIRKAAYVAVMQK-VSASDRSGYESLLRVYRET---DLSQ 735 (858)
Q Consensus 660 ~lr~~i~~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~~vy~~~~~~-~~~g~~~~~~~l~~~y~~s---~~~~ 735 (858)
.....++...|+.|. +++|.+.|+..... .++|+... |..++.+ .+.|.-++-..+++..... .+..
T Consensus 580 vTynaLI~ay~k~G~---ldeA~elf~~M~e~----gi~p~~~t--ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~ 650 (1060)
T PLN03218 580 ITVGALMKACANAGQ---VDRAKEVYQMIHEY----NIKGTPEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650 (1060)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHc----CCCCChHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Confidence 455667777777775 46788888777543 23444332 2222211 1245544444444444432 2233
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhcCcccccc-ceee-ee-eccc-cHHHHHHHHHHHHHHHHHH-hCCC-cchhHHH
Q 003010 736 EKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQD-AVYG-LA-VSIE-GRETAWKWLKDNWDHISKT-WGSG-FLITRFI 809 (858)
Q Consensus 736 ek~~ll~aL~ct~d~~ll~~~L~~~l~~~ir~qd-~~~~-~~-vs~~-g~~~aw~fl~~n~~~i~~~-~~~~-~~l~~~i 809 (858)
--..++.+++...+.+...++++......+.+.. .... +. .+.. -.+.|.+.+. .+.+. .... .....+|
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~----eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE----DIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH----HHHHcCCCCCHHHHHHHH
Confidence 4456777877778877777777776654333322 1112 22 2333 3445555432 33321 1111 2344455
Q ss_pred HHhccccCCHHHHHHHHhhhc
Q 003010 810 SSIVSPVCCLHLSNYVFRFST 830 (858)
Q Consensus 810 ~~~~~~~~t~~~~~~v~~F~~ 830 (858)
... +...+.++..++|+
T Consensus 727 ~gy----~k~G~~eeAlelf~ 743 (1060)
T PLN03218 727 TAL----CEGNQLPKALEVLS 743 (1060)
T ss_pred HHH----HHCCCHHHHHHHHH
Confidence 444 44566666666664
No 65
>PRK10301 hypothetical protein; Provisional
Probab=28.78 E-value=3.1e+02 Score=25.26 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=19.4
Q ss_pred CCeEEEEEeCCCcCCceEEEEEEEEe
Q 003010 84 ADEILVLEFAETLPTGMGVLAIGFEG 109 (858)
Q Consensus 84 ~~~~l~i~l~~~L~~g~~~l~i~y~g 109 (858)
+...+.+.++.+|++|.|+|+-+-.+
T Consensus 84 ~~~~~~v~l~~~L~~G~YtV~Wrvvs 109 (124)
T PRK10301 84 DQKQLIVPLADSLKPGTYTVDWHVVS 109 (124)
T ss_pred CCcEEEEECCCCCCCccEEEEEEEEe
Confidence 34568888888999999988655443
No 66
>PRK02391 heat shock protein HtpX; Provisional
Probab=28.41 E-value=1.2e+02 Score=32.70 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCcceeecCCCCCcccc---ccccceeecccccccCCCChHHHHHHHHHHHHHHHHHHHhcC
Q 003010 240 AVKTLELYKEYFAVPYSLPKLDMIAIPDFAAGAME---NYGLVTYRETALLYDDQHSAAANKQRVATVVAHELAHQWFGN 316 (858)
Q Consensus 240 ~~~~l~~~e~~fg~~yp~~kld~v~~P~~~~gamE---n~Gli~~~e~~ll~~~~~~~~~~~~~~~~~iaHElaHqWfGn 316 (858)
..+.++-+.+..|+| .|++-++-.+...+-+.. +-+.|.+.+. ++- . -+..++..++|||++|---++
T Consensus 78 L~~~v~~la~~~~~~--~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g-Ll~-~-----L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 78 LHAMVERLCALADLP--KPRVAVADSDVPNAFATGRSPKNAVVCVTTG-LMR-R-----LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred HHHHHHHHHHHcCCC--CCcEEEEeCCCCceEEecCCCCCcEEEecHH-HHh-h-----CCHHHHHHHHHHHHHHHHcCC
Confidence 345556666777765 456655544332222211 1233444333 221 1 123568899999999976654
No 67
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=27.59 E-value=45 Score=33.64 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=20.3
Q ss_pred cccCCCChHHHHHHHHHHHHHHHHHHHhcCccc
Q 003010 287 LYDDQHSAAANKQRVATVVAHELAHQWFGNLVT 319 (858)
Q Consensus 287 l~~~~~~~~~~~~~~~~~iaHElaHqWfGnlVt 319 (858)
+|++........-.+-.+|||||.|-.-...+.
T Consensus 22 ~f~~~~p~~~~yg~lG~ilahel~hafd~~g~~ 54 (206)
T PF01431_consen 22 FFDPNYPPALNYGGLGFILAHELMHAFDPEGIN 54 (206)
T ss_dssp T--TTS-HHHHHHTHHHHHHHHHHHCTSTTGGG
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 445554555555567889999999976444433
No 68
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=26.32 E-value=1.6e+02 Score=27.05 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.9
Q ss_pred cCCeEEEEEeCCCcCCceEEEEEEE
Q 003010 83 EADEILVLEFAETLPTGMGVLAIGF 107 (858)
Q Consensus 83 ~~~~~l~i~l~~~L~~g~~~l~i~y 107 (858)
.....+.+.++.+|.+|.|.+.+..
T Consensus 83 ~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 83 GGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp T-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred CCEEEEEEEEcCccCCCeEEEEEEE
Confidence 4445677788888999999999888
No 69
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=25.34 E-value=90 Score=26.04 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=40.9
Q ss_pred CchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Q 003010 698 PPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDLSQEKTRILSSLASCPDVNIVLEVLNFLLSS 763 (858)
Q Consensus 698 ~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~ 763 (858)
++.+|..+.-+++ +.++.+....+.+.. +..++.-|...+.+||...++..+..+.+.+.++
T Consensus 13 ~~~vr~~a~~~L~---~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 13 DPQVRAEAARALG---ELGDPEAIPALIELL-KDEDPMVRRAAARALGRIGDPEAIPALIKLLQDD 74 (88)
T ss_dssp SHHHHHHHHHHHH---CCTHHHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHH---HcCCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC
Confidence 4666654333332 245555666677666 5677888888888888888888777777765543
No 70
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=24.23 E-value=1e+02 Score=29.24 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHH
Q 003010 299 QRVATVVAHELAHQ 312 (858)
Q Consensus 299 ~~~~~~iaHElaHq 312 (858)
..+..+|.|||||-
T Consensus 59 ~f~~~vV~HELaHl 72 (156)
T COG3091 59 DFIEQVVPHELAHL 72 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 35778899999874
No 71
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=24.09 E-value=1.9e+02 Score=31.06 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 003010 298 KQRVATVVAHELAHQWFGN 316 (858)
Q Consensus 298 ~~~~~~~iaHElaHqWfGn 316 (858)
...++.+++||+|||=-+.
T Consensus 272 ddglAtvLgHE~aHaVarH 290 (424)
T KOG2661|consen 272 DDGLATVLGHEIAHAVARH 290 (424)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4469999999999997664
No 72
>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2.4.1.119 from EC). OST catalyses the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are thought to be responsible for OST catalytic activity []. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function []. Most family members are predicted to have a transmembrane helix at the C terminus of this region.; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0006486 protein glycosylation, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.14 E-value=7.4e+02 Score=28.26 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=43.8
Q ss_pred EecCCCCeEEEEEEEEEEEEcC--CCEEEEEeCC---ceEeEEEEEeccCCCCcc--ccCeeEEEecCCeEEEEEeCCCc
Q 003010 24 TPDLTSCKFGGSVAIDVDVVGD--TKFIVLNAAD---LTINNRSVSFTNKVSSKA--LEPTKVELVEADEILVLEFAETL 96 (858)
Q Consensus 24 ~~d~~~~~f~G~v~I~~~~~~~--~~~i~Lh~~~---l~I~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~l~~~L 96 (858)
.+|+.+....=++.|+++...+ .+...+-... -.+..+.+...++..... .....+......+...|.|++||
T Consensus 10 ~idl~~~~vk~~~~i~i~N~g~~p~~~y~~~l~~~~~~~ls~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~pl 89 (432)
T PF04597_consen 10 TIDLSKSYVKETIEITIKNIGDEPVSEYYFALPNDEADHLSYVSAKDKDKKKKLKVSKEITEVNSGSEIKYYEITLPKPL 89 (432)
T ss_pred EEEccCcEEEEEEEEEEEECCCCCceEEEEEECchhhccEEEEEEEECCCccccccccccccccCCCCcceEEEECCCCC
Confidence 3556565666666666665433 3444332221 233333333221111011 11122222233456899999999
Q ss_pred CCc-eEEEEEEEE
Q 003010 97 PTG-MGVLAIGFE 108 (858)
Q Consensus 97 ~~g-~~~l~i~y~ 108 (858)
+|| +.+|.++|.
T Consensus 90 ~~~~~~~l~v~~~ 102 (432)
T PF04597_consen 90 APGEKVTLTVEYV 102 (432)
T ss_pred CCCCEEEEEEEEE
Confidence 999 888888775
No 73
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=22.84 E-value=3.4e+02 Score=27.85 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHhHHHHHhcC
Q 003010 568 DRFGILDDHFALCMARQQTLTSLLTLMASYSEETEYTVLSNLITISYKIGRIAADARPELLDYLKQFFISLFQNSAEKLG 647 (858)
Q Consensus 568 ~Ra~li~D~~~la~~g~l~~~~~l~l~~~l~~E~~~~~w~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lg 647 (858)
-|.+++.=...+.++|.++...+.+++..|-.|-+..|=..+....+.+-..++..... ... ..+|+..++..+.
T Consensus 4 kr~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~~~-~~~----~ldLlP~~Ls~L~ 78 (223)
T PF14675_consen 4 KRFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGDNK-NGK----WLDLLPKCLSALS 78 (223)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS---S--ST----TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCcc-cch----HHHHHHHHHHHHh
Confidence 37788888888999999999999999999999999988888877777666655432111 111 2223333333331
Q ss_pred Cc---cCCCCCHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 003010 648 WD---SKPGESHLDALLRGEIFTALALLGHK-ETLNEASKRFHA 687 (858)
Q Consensus 648 ~~---~~~~~~~~~~~lr~~i~~~ac~~g~~-~c~~~A~~~f~~ 687 (858)
-. ...++...-...+..+++-.|...=+ .|+-.-..+|++
T Consensus 79 ~~~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd 122 (223)
T PF14675_consen 79 ASESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRD 122 (223)
T ss_dssp T-S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGG
T ss_pred cCcccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhc
Confidence 11 01122223467788888888876533 444444445543
No 74
>PF13934 ELYS: Nuclear pore complex assembly
Probab=22.33 E-value=1.6e+02 Score=30.37 Aligned_cols=94 Identities=18% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCCchhhhHhhheeeeccccCCHHHHHHHHHHHHcCCC-HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCccccccc-eee
Q 003010 696 LLPPDIRKAAYVAVMQKVSASDRSGYESLLRVYRETDL-SQEKTRILSSLASCPDVNIVLEVLNFLLSSEVRSQDA-VYG 773 (858)
Q Consensus 696 ~i~~~lr~~vy~~~~~~~~~g~~~~~~~l~~~y~~s~~-~~ek~~ll~aL~ct~d~~ll~~~L~~~l~~~ir~qd~-~~~ 773 (858)
.||+.++..+-+.. +=|..+|+.-.+....+.. +.--..|+.+|.+..++.+.-+|+... .+...+.+. ...
T Consensus 74 ~ip~~~~~~~~g~W-----~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~-~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 74 GIPPKYIKFIQGFW-----LLDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAV-GPPLSSPEALTLY 147 (226)
T ss_pred CCCHHHHHHHHHHH-----HhChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc-CCCCCCHHHHHHH
Confidence 48888877443322 2255678777777666544 344557999999999999998888864 333444443 333
Q ss_pred ee-eccccHHHHHHHHHHHHHHH
Q 003010 774 LA-VSIEGRETAWKWLKDNWDHI 795 (858)
Q Consensus 774 ~~-vs~~g~~~aw~fl~~n~~~i 795 (858)
+. ++++...-||.|.+..-+..
T Consensus 148 ~~~La~~~v~EAf~~~R~~~~~~ 170 (226)
T PF13934_consen 148 FVALANGLVTEAFSFQRSYPDEL 170 (226)
T ss_pred HHHHHcCCHHHHHHHHHhCchhh
Confidence 44 67778888999988776644
No 75
>PRK09687 putative lyase; Provisional
Probab=22.28 E-value=9.5e+02 Score=25.48 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC--CCHHHHHHHH
Q 003010 716 SDRSGYESLLRVYRETDLSQEKTRILSSLASC--PDVNIVLEVL 757 (858)
Q Consensus 716 g~~~~~~~l~~~y~~s~~~~ek~~ll~aL~ct--~d~~ll~~~L 757 (858)
|+....+.|..... ..++.-|.....|||.. .++..+.-++
T Consensus 156 ~~~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~~~~~~L~ 198 (280)
T PRK09687 156 NDEAAIPLLINLLK-DPNGDVRNWAAFALNSNKYDNPDIREAFV 198 (280)
T ss_pred CCHHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 34444555555443 33445555555566532 2444443333
No 76
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=22.09 E-value=20 Score=41.05 Aligned_cols=56 Identities=21% Similarity=0.471 Sum_probs=35.2
Q ss_pred cceeeccc---ccccCCCChHHHHHHHHHHHHHHHHHHHhc-------CccccCccchhHHhhhHHHHHH
Q 003010 278 LVTYRETA---LLYDDQHSAAANKQRVATVVAHELAHQWFG-------NLVTMEWWTHLWLNEGFATWVS 337 (858)
Q Consensus 278 li~~~e~~---ll~~~~~~~~~~~~~~~~~iaHElaHqWfG-------nlVt~~~w~d~WLnEGfA~y~~ 337 (858)
.|+|.... -+|+++.++..+.-.+-.+|+|||.|.+=. +..-.+| |..|--+.|-+
T Consensus 461 ~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFDdqGakfD~~GnL~dW----WT~eD~~aF~~ 526 (654)
T COG3590 461 EIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFDDQGAKFDGDGNLNDW----WTDEDAAAFKE 526 (654)
T ss_pred eEeeeHHhcCCCCCCCCcchhhcccCccceehhhhcccccCCccccCCCCcHHhh----cCHHHHHHHHH
Confidence 45555442 256777777777777889999999997632 3333345 55565555443
No 77
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=21.86 E-value=1.6e+02 Score=24.95 Aligned_cols=19 Identities=26% Similarity=0.775 Sum_probs=12.4
Q ss_pred HHHHHHHHHHH-HHHHHhcC
Q 003010 298 KQRVATVVAHE-LAHQWFGN 316 (858)
Q Consensus 298 ~~~~~~~iaHE-laHqWfGn 316 (858)
...+..+|.|| +-|-||.-
T Consensus 61 ra~lr~~iiheelhhrw~~r 80 (109)
T PF15641_consen 61 RAELRNTIIHEELHHRWWKR 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566777776 66778754
No 78
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=21.34 E-value=3.2e+02 Score=26.81 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCc
Q 003010 297 NKQRVATVVAHELAHQWFGNLVTMEW 322 (858)
Q Consensus 297 ~~~~~~~~iaHElaHqWfGnlVt~~~ 322 (858)
.+..+..+|+|||.|.|=--..-++|
T Consensus 67 ~~~~l~~~l~HELIHayD~cr~kvD~ 92 (173)
T PF09768_consen 67 SQGHLEDTLTHELIHAYDHCRAKVDW 92 (173)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44568899999999998544444444
No 79
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=20.89 E-value=2e+02 Score=29.25 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHH
Q 003010 301 VATVVAHELAHQW 313 (858)
Q Consensus 301 ~~~~iaHElaHqW 313 (858)
.+.++|||++|..
T Consensus 145 ~~~~~AHElGH~l 157 (220)
T cd04272 145 GVYTMTHELAHLL 157 (220)
T ss_pred cHHHHHHHHHHHh
Confidence 4689999999985
No 80
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.77 E-value=1.3e+03 Score=27.93 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=10.6
Q ss_pred HHHHHhcccCCcHHHHHHHHHHHHH
Q 003010 591 LTLMASYSEETEYTVLSNLITISYK 615 (858)
Q Consensus 591 l~l~~~l~~E~~~~~w~~~~~~l~~ 615 (858)
++++.+++.+.|........+.|+.
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~evl~~ 286 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNEVLER 286 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHH
Confidence 3444444444444444444444433
No 81
>PF09836 DUF2063: Uncharacterized protein conserved in bacteria (DUF2063); InterPro: IPR018640 This entry contains proteins that have no known function. ; PDB: 3DEE_A.
Probab=20.64 E-value=57 Score=28.23 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHhhCHHHHHHHHHHHHHHhccCCCChHH
Q 003010 402 LQNYLGAECFQRSLASYIKKYACSNAKTED 431 (858)
Q Consensus 402 L~~~lG~~~F~~~l~~yl~~~~~~~~~~~d 431 (858)
++..||++.|....+.|+.++.-.+.+..+
T Consensus 55 ~~~llG~~~f~~la~~y~~~~p~~s~~l~~ 84 (94)
T PF09836_consen 55 VRALLGEEFFDALARAYIRAHPSRSPDLND 84 (94)
T ss_dssp GGGGS-HHHHHHHHHHHHHSGGGG-S-GGG
T ss_pred HHHHhCHHHHHHHHHHHHHhCCCCCCcHHH
Confidence 456789999999999999998766655443
No 82
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=20.57 E-value=1.5e+02 Score=31.98 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCC--------CCCcceeecCCCCCcccc-ccccceeecccccccCCCChHHHHHH--
Q 003010 232 QGKFALNVAVKTLELYKEYFAVPYS--------LPKLDMIAIPDFAAGAME-NYGLVTYRETALLYDDQHSAAANKQR-- 300 (858)
Q Consensus 232 ~~~~~l~~~~~~l~~~e~~fg~~yp--------~~kld~v~~P~~~~gamE-n~Gli~~~e~~ll~~~~~~~~~~~~~-- 300 (858)
+....++...++++...++.|++.+ .++..+|.-+..+.|.|- ..+-|.+.... . ...-....
T Consensus 144 d~~~ll~~~D~ii~~~~el~Gl~~~~~~~~~~~~~~~r~v~~v~~~~g~m~a~g~~i~~~~~~--~----~~~l~~~~~~ 217 (307)
T PF13402_consen 144 DPEELLRFWDRIIDAEYELAGLDKSSPGPENNPMPNNRFVFDVQISAGYMHASGYPIGFPPNW--M----NELLNPNPLR 217 (307)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-BSS--GGGB--S--EEEEEETT----SEEEETTEEEEETT--------HHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCcccCCccccCcccceEEEeccccccceeecCCcEEeeCcH--H----hcccCHhHcC
Confidence 3566777888899999999998874 223367777777777777 33334443320 0 11111111
Q ss_pred -HHHHHHHHHHHHHhcCccccCccchhHHhhhHHHHHHHHHHhhhCc
Q 003010 301 -VATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFP 346 (858)
Q Consensus 301 -~~~~iaHElaHqWfGnlVt~~~w~d~WLnEGfA~y~~~~~~~~~~~ 346 (858)
-.-.+.||+.|+-= ..+--|.. +-|.--+.++........+
T Consensus 218 ~~~WG~~HE~GH~~Q---~~~~~~~g--~~EvTnNi~sl~~~~~~~~ 259 (307)
T PF13402_consen 218 KGGWGPWHELGHNHQ---QGPWTWSG--MGEVTNNIYSLYVQEKFGN 259 (307)
T ss_dssp HH-HHHHHHHHHHH----BGGG--TT---TTTTHHHHHHHHHHHTT-
T ss_pred CCCeeehhhhhhhcC---ccccccCC--CCchhhHHHHHHHHHHHhc
Confidence 35579999999842 12111333 6788788888776666653
No 83
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=20.30 E-value=3.9e+02 Score=23.74 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=20.8
Q ss_pred cCCeEEEEEeCCCcCCceEEEEEE--EEe
Q 003010 83 EADEILVLEFAETLPTGMGVLAIG--FEG 109 (858)
Q Consensus 83 ~~~~~l~i~l~~~L~~g~~~l~i~--y~g 109 (858)
.....|.+.+|..|..|.|+|.|. |.+
T Consensus 61 N~ps~l~~~lPa~L~~G~Y~l~V~Tq~~~ 89 (102)
T PF14734_consen 61 NKPSRLIFILPADLAAGEYTLEVRTQYSG 89 (102)
T ss_pred CCCcEEEEECcCccCceEEEEEEEEEecC
Confidence 334578888999999999988874 554
No 84
>PF13205 Big_5: Bacterial Ig-like domain
Probab=20.02 E-value=5.7e+02 Score=22.03 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.2
Q ss_pred cCCeEEEEEeCCCcCCc-eEEEEEEEE
Q 003010 83 EADEILVLEFAETLPTG-MGVLAIGFE 108 (858)
Q Consensus 83 ~~~~~l~i~l~~~L~~g-~~~l~i~y~ 108 (858)
..+..+.|.+.++|.+| .|+|.|.-.
T Consensus 59 ~~~~~~~i~p~~~L~~~t~Y~v~i~~~ 85 (107)
T PF13205_consen 59 WDGNTLTITPSQPLKPGTTYTVTIDSG 85 (107)
T ss_pred ccCCEEEEEECCcCCCCCEEEEEECCC
Confidence 56688999999999999 999999544
Done!