Query 003011
Match_columns 857
No_of_seqs 920 out of 5447
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003011hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.9E-83 4.1E-88 803.8 58.9 697 2-779 376-1097(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 7.5E-42 1.6E-46 406.9 13.9 279 1-293 342-652 (889)
3 PLN00113 leucine-rich repeat r 100.0 4E-34 8.7E-39 358.9 26.9 412 130-553 39-492 (968)
4 PLN00113 leucine-rich repeat r 100.0 5.2E-32 1.1E-36 339.9 25.3 369 176-553 156-564 (968)
5 KOG4194 Membrane glycoprotein 99.9 3.7E-28 8E-33 260.4 4.7 313 216-532 103-433 (873)
6 KOG0444 Cytoskeletal regulator 99.9 6E-29 1.3E-33 267.3 -5.4 334 179-529 27-376 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 8.2E-29 1.8E-33 266.3 -6.6 360 183-556 6-382 (1255)
8 KOG4194 Membrane glycoprotein 99.9 3.5E-27 7.7E-32 252.9 5.4 348 164-524 82-448 (873)
9 PLN03210 Resistant to P. syrin 99.9 2.7E-24 5.9E-29 270.6 25.2 312 179-532 583-910 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 9E-27 1.9E-31 240.1 -9.1 259 164-437 49-312 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 2E-26 4.4E-31 237.5 -8.7 325 165-528 165-541 (565)
12 KOG0618 Serine/threonine phosp 99.9 7E-25 1.5E-29 247.6 -3.9 358 177-548 38-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.8 6.1E-20 1.3E-24 215.1 18.0 260 217-532 203-462 (788)
14 KOG0618 Serine/threonine phosp 99.8 1E-22 2.2E-27 230.2 -6.5 328 186-532 23-423 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 6.5E-19 1.4E-23 206.6 16.1 264 184-511 201-465 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 2E-17 4.3E-22 195.5 12.8 176 217-409 180-357 (754)
17 PRK15370 E3 ubiquitin-protein 99.7 7.6E-17 1.6E-21 190.6 12.1 245 237-528 178-428 (754)
18 KOG4237 Extracellular matrix p 99.6 1E-17 2.2E-22 173.5 -2.2 310 213-528 65-477 (498)
19 KOG4237 Extracellular matrix p 99.5 3.2E-16 6.9E-21 162.6 -7.3 354 160-525 69-498 (498)
20 cd00116 LRR_RI Leucine-rich re 99.5 2.2E-15 4.7E-20 164.9 -2.9 139 369-526 160-318 (319)
21 KOG0617 Ras suppressor protein 99.5 9.5E-16 2.1E-20 141.6 -4.9 166 352-547 34-201 (264)
22 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 140.8 -4.9 168 320-513 23-194 (264)
23 PF00931 NB-ARC: NB-ARC domain 99.4 1.3E-13 2.8E-18 148.5 4.5 90 2-91 183-281 (287)
24 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.8E-19 157.8 -4.9 116 370-504 189-319 (319)
25 KOG4658 Apoptotic ATPase [Sign 99.2 2.2E-11 4.7E-16 146.8 5.7 244 159-426 546-798 (889)
26 KOG1259 Nischarin, modulator o 99.0 2.1E-10 4.6E-15 115.4 2.0 83 351-436 284-366 (490)
27 KOG0532 Leucine-rich repeat (L 98.9 6.8E-11 1.5E-15 128.7 -3.1 167 352-547 99-271 (722)
28 KOG0532 Leucine-rich repeat (L 98.9 1.1E-10 2.3E-15 127.3 -3.9 216 235-547 73-291 (722)
29 COG4886 Leucine-rich repeat (L 98.9 3.5E-09 7.5E-14 119.6 7.7 175 352-532 117-294 (394)
30 COG4886 Leucine-rich repeat (L 98.8 1.3E-08 2.7E-13 115.0 8.4 190 219-435 97-290 (394)
31 KOG3207 Beta-tubulin folding c 98.7 2E-09 4.3E-14 114.3 0.8 205 280-529 118-340 (505)
32 KOG1259 Nischarin, modulator o 98.7 5.5E-09 1.2E-13 105.4 1.2 61 466-527 326-386 (490)
33 KOG3207 Beta-tubulin folding c 98.7 2.8E-09 6.1E-14 113.1 -1.1 149 215-386 121-283 (505)
34 PF14580 LRR_9: Leucine-rich r 98.7 9.4E-09 2E-13 100.1 2.3 126 181-314 16-147 (175)
35 PRK15386 type III secretion pr 98.6 1.5E-07 3.2E-12 102.5 8.9 62 534-596 154-217 (426)
36 PF14580 LRR_9: Leucine-rich r 98.5 5.9E-08 1.3E-12 94.6 4.2 79 235-316 17-97 (175)
37 KOG1909 Ran GTPase-activating 98.5 4.4E-09 9.5E-14 108.9 -4.6 62 466-527 238-310 (382)
38 KOG1909 Ran GTPase-activating 98.4 1.3E-08 2.8E-13 105.5 -3.4 135 394-547 153-309 (382)
39 KOG0531 Protein phosphatase 1, 98.4 3.4E-08 7.4E-13 111.8 -0.6 240 182-435 70-318 (414)
40 KOG0531 Protein phosphatase 1, 98.4 6E-08 1.3E-12 109.9 -0.7 98 216-316 73-171 (414)
41 PRK15386 type III secretion pr 98.4 2E-06 4.3E-11 93.8 11.0 153 353-548 54-212 (426)
42 PLN03150 hypothetical protein; 98.4 6.9E-07 1.5E-11 106.0 7.8 89 239-327 420-510 (623)
43 PLN03150 hypothetical protein; 98.3 8.4E-07 1.8E-11 105.3 7.6 109 216-324 419-532 (623)
44 PF13855 LRR_8: Leucine rich r 98.3 6.8E-07 1.5E-11 71.4 3.5 59 469-527 1-61 (61)
45 KOG2120 SCF ubiquitin ligase, 98.1 6.1E-08 1.3E-12 98.1 -7.3 179 237-432 185-373 (419)
46 PF13855 LRR_8: Leucine rich r 98.0 5.4E-06 1.2E-10 66.2 4.0 57 352-408 2-59 (61)
47 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3.1E-12 95.5 -6.6 175 352-549 186-376 (419)
48 KOG4341 F-box protein containi 98.0 2.7E-07 5.8E-12 97.9 -5.9 63 467-529 344-415 (483)
49 KOG2982 Uncharacterized conser 97.9 1.6E-06 3.5E-11 88.0 -0.5 100 217-316 47-155 (418)
50 KOG1859 Leucine-rich repeat pr 97.9 8.7E-08 1.9E-12 107.5 -10.5 127 352-506 165-293 (1096)
51 KOG4341 F-box protein containi 97.8 8.3E-07 1.8E-11 94.3 -5.7 137 372-529 292-440 (483)
52 KOG4579 Leucine-rich repeat (L 97.7 1.6E-06 3.4E-11 78.4 -3.9 107 399-528 28-136 (177)
53 PF12799 LRR_4: Leucine Rich r 97.7 2.3E-05 5.1E-10 57.5 2.8 39 470-508 2-40 (44)
54 PF12799 LRR_4: Leucine Rich r 97.6 5.7E-05 1.2E-09 55.5 2.8 35 237-271 1-35 (44)
55 KOG1859 Leucine-rich repeat pr 97.5 1.4E-06 3.1E-11 98.0 -8.6 122 216-341 165-290 (1096)
56 KOG2982 Uncharacterized conser 97.5 4.1E-05 9E-10 78.0 1.7 183 350-532 70-266 (418)
57 KOG3665 ZYG-1-like serine/thre 97.2 7.3E-05 1.6E-09 88.7 -0.3 105 184-294 122-231 (699)
58 KOG3665 ZYG-1-like serine/thre 97.2 7.9E-05 1.7E-09 88.4 -0.3 107 328-435 146-263 (699)
59 KOG1644 U2-associated snRNP A' 97.1 0.00063 1.4E-08 66.1 5.2 59 468-526 87-151 (233)
60 KOG1644 U2-associated snRNP A' 97.0 0.0011 2.3E-08 64.5 5.6 81 215-295 42-125 (233)
61 KOG4579 Leucine-rich repeat (L 96.9 5E-05 1.1E-09 68.9 -4.3 112 376-511 29-142 (177)
62 COG5238 RNA1 Ran GTPase-activa 96.8 0.00039 8.5E-09 70.2 0.9 209 215-434 30-284 (388)
63 COG5238 RNA1 Ran GTPase-activa 96.7 0.0005 1.1E-08 69.5 0.6 144 392-546 86-252 (388)
64 KOG2739 Leucine-rich acidic nu 96.3 0.0024 5.1E-08 64.9 2.9 88 465-553 61-160 (260)
65 KOG2739 Leucine-rich acidic nu 95.7 0.0058 1.3E-07 62.1 2.2 12 236-247 64-75 (260)
66 KOG1947 Leucine rich repeat pr 95.6 0.001 2.3E-08 77.0 -4.1 39 373-411 268-308 (482)
67 PF13306 LRR_5: Leucine rich r 95.0 0.11 2.4E-06 48.0 8.4 104 175-292 3-112 (129)
68 KOG1947 Leucine rich repeat pr 94.9 0.0036 7.8E-08 72.5 -2.6 62 467-528 241-308 (482)
69 KOG2123 Uncharacterized conser 94.8 0.0017 3.6E-08 66.1 -4.7 66 466-532 38-105 (388)
70 KOG2123 Uncharacterized conser 94.5 0.0013 2.8E-08 66.8 -6.3 56 216-271 42-99 (388)
71 PF00560 LRR_1: Leucine Rich R 93.6 0.03 6.5E-07 34.3 0.8 18 494-511 2-19 (22)
72 PF00560 LRR_1: Leucine Rich R 93.5 0.04 8.6E-07 33.7 1.3 20 238-257 1-20 (22)
73 PF13306 LRR_5: Leucine rich r 92.5 0.46 1E-05 43.7 7.5 95 215-315 12-111 (129)
74 PRK04841 transcriptional regul 92.4 0.9 1.9E-05 57.3 12.5 125 3-130 207-335 (903)
75 PF13504 LRR_7: Leucine rich r 91.6 0.087 1.9E-06 29.9 0.9 11 494-504 3-13 (17)
76 PF13504 LRR_7: Leucine rich r 90.3 0.19 4.1E-06 28.6 1.4 13 239-251 3-15 (17)
77 KOG0473 Leucine-rich repeat pr 89.5 0.012 2.6E-07 58.5 -6.5 87 178-272 36-123 (326)
78 PF07725 LRR_3: Leucine Rich R 89.4 0.26 5.6E-06 29.2 1.5 20 238-257 1-20 (20)
79 KOG4308 LRR-containing protein 84.8 0.012 2.7E-07 67.1 -11.0 38 398-435 144-185 (478)
80 smart00370 LRR Leucine-rich re 83.6 0.78 1.7E-05 29.1 1.7 20 491-510 1-20 (26)
81 smart00369 LRR_TYP Leucine-ric 83.6 0.78 1.7E-05 29.1 1.7 20 491-510 1-20 (26)
82 KOG0473 Leucine-rich repeat pr 82.9 0.049 1.1E-06 54.3 -6.1 79 215-294 42-122 (326)
83 KOG3864 Uncharacterized conser 82.6 0.38 8.3E-06 47.3 -0.1 39 157-195 98-136 (221)
84 smart00369 LRR_TYP Leucine-ric 81.4 0.99 2.1E-05 28.7 1.5 19 237-255 2-20 (26)
85 smart00370 LRR Leucine-rich re 81.4 0.99 2.1E-05 28.7 1.5 19 237-255 2-20 (26)
86 KOG3864 Uncharacterized conser 80.0 0.55 1.2E-05 46.3 -0.0 81 236-316 100-185 (221)
87 smart00364 LRR_BAC Leucine-ric 71.8 2.4 5.1E-05 27.1 1.2 17 216-232 3-19 (26)
88 smart00364 LRR_BAC Leucine-ric 69.4 2.8 6E-05 26.7 1.2 18 492-509 2-19 (26)
89 KOG4308 LRR-containing protein 69.1 0.06 1.3E-06 61.5 -11.4 38 398-435 262-303 (478)
90 smart00365 LRR_SD22 Leucine-ri 58.8 7.7 0.00017 24.8 1.7 16 237-252 2-17 (26)
91 PF13516 LRR_6: Leucine Rich r 47.6 10 0.00022 23.4 1.0 14 492-505 2-15 (24)
92 smart00367 LRR_CC Leucine-rich 44.5 15 0.00033 23.2 1.5 13 515-527 2-14 (26)
93 KOG3763 mRNA export factor TAP 38.3 13 0.00029 42.4 0.8 64 467-531 216-286 (585)
94 TIGR00635 ruvB Holliday juncti 37.1 1.1E+02 0.0024 32.7 7.8 103 3-112 183-293 (305)
95 KOG4242 Predicted myosin-I-bin 36.7 1.7E+02 0.0037 33.2 8.7 19 259-277 164-182 (553)
96 smart00368 LRR_RI Leucine rich 30.3 38 0.00082 21.9 1.7 13 238-250 3-15 (28)
97 PRK00080 ruvB Holliday junctio 27.1 58 0.0013 35.5 3.5 105 2-112 203-314 (328)
98 KOG3763 mRNA export factor TAP 25.3 32 0.0007 39.4 1.0 79 235-313 216-307 (585)
99 PF13730 HTH_36: Helix-turn-he 24.0 68 0.0015 24.3 2.4 45 58-105 2-55 (55)
100 COG3899 Predicted ATPase [Gene 20.4 2.4E+02 0.0051 35.3 7.3 126 2-127 241-386 (849)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-83 Score=803.81 Aligned_cols=697 Identities=32% Similarity=0.474 Sum_probs=578.7
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHHHhhcCChhHHHHHHHhHhccCH-HHHHHhhhhhcCCCCCCHH
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHNLKRISDRDVYEVLKISYDELNW-EEKNIFLDIACFFKGEDKD 80 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~L~~~~~~~i~~~Lk~SYd~L~~-~~K~cFl~~a~Fp~~~~~~ 80 (857)
+++++||++|+|+||||+++|+.|++|+.++|++++++|++.++.+|+++|++|||+|++ .+|.||+||||||++++++
T Consensus 376 ~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~ 455 (1153)
T PLN03210 376 ELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN 455 (1153)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH
Confidence 689999999999999999999999999999999999999998889999999999999986 5999999999999999999
Q ss_pred HHHHHhcCCCc-hHHHHHHhhcccceeeecCCeEeccHHHHHHHHHHhhhccCCCCCcceeeccccchhhhcccCcccCc
Q 003011 81 YVTRIQDDPDF-VRYVLNVLVNKSLITISSYNKLEMHDLLEEMGREIVRCESVKEPGKRSRLWHHEDIYHVLKKNKGTDS 159 (857)
Q Consensus 81 ~l~~~~~~~g~-~~~~l~~Li~rsLi~~~~~~~~~MHDLl~dl~~~i~~~e~~~~~~~~~rl~~~~di~~vl~~~~~~~~ 159 (857)
++..++.++|+ ++.+++.|++||||+++ .++++||||+|+||++|+++++ .+|++|+|+|+++||++++.+++|+++
T Consensus 456 ~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~ 533 (1153)
T PLN03210 456 DIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKK 533 (1153)
T ss_pred HHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccce
Confidence 99999988888 88899999999999998 7899999999999999999998 789999999999999999999999999
Q ss_pred EEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCc
Q 003011 160 IEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENL 239 (857)
Q Consensus 160 i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L 239 (857)
+++|++|++...+..+..++|.+|++|++|.++.+.+.........+|+++..+|.+||+|+|.+|+++.+|..|.+.+|
T Consensus 534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L 613 (1153)
T PLN03210 534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENL 613 (1153)
T ss_pred eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCC
Confidence 99999999999999999999999999999999877543334456789999999999999999999999999999999999
Q ss_pred cEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCC
Q 003011 240 IELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCES 319 (857)
Q Consensus 240 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~ 319 (857)
++|+|++|+++.+|.++..+++|+.|+|++|..+..+|+++.+++|++|+|++|..+..+|.+++++++|+.|++++|+.
T Consensus 614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCcccccc-------ccc
Q 003011 320 LRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKS-------ISS 392 (857)
Q Consensus 320 l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~-------lp~ 392 (857)
++.+|..+.+++|+.|++++|..+..+|....+|+.|++++|.+..+|..+ .+++|++|.+.++..... .+.
T Consensus 694 L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 694 LEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchh
Confidence 999999889999999999999999999999999999999999999999876 688999999987543211 111
Q ss_pred cccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC-ccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCC
Q 003011 393 RICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST-TIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSL 471 (857)
Q Consensus 393 ~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L 471 (857)
.....++|+.|++++|.....+|..++++++|+.|++++| .++.+|... ++++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------------------------~L~sL 827 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------------------------NLESL 827 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------------------------Ccccc
Confidence 2234578999999999999999999999999999999986 466666532 46788
Q ss_pred cEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCCCCC---CCcceeeccccc
Q 003011 472 TGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLPELP---PSLILLEARNCK 547 (857)
Q Consensus 472 ~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~---~sL~~L~i~~C~ 547 (857)
+.|+|++|.... +|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.+++.+|+
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 999999875443 5543 468999999999999999999999999999999999999888543 567788999999
Q ss_pred CCCcccCcchhhhhhhhhhhhhhccccccccCCceEEEecccccccHhhhhhhhhHHHHHHHHhhhhhhhhhccccCCCC
Q 003011 548 QLQSLPELSSYLEELDASKLETLSEYSDVFAQPRITFTFTNCLKLNRKSYNILADSELRMQHMATASLRLFYEKVFDVPP 627 (857)
Q Consensus 548 ~L~~l~~~~~~l~~L~~~~l~~L~~~~~~~~~~~~~l~~~nC~~L~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~ 627 (857)
+|+.++..........+.... ...+ .....+.|.||++|++.+... .+ ..
T Consensus 905 ~L~~~~l~~~~~~~~~~~~n~-----~~~~-p~~~~l~f~nC~~L~~~a~l~-------~~-----------------~~ 954 (1153)
T PLN03210 905 ALTEASWNGSPSEVAMATDNI-----HSKL-PSTVCINFINCFNLDQEALLQ-------QQ-----------------SI 954 (1153)
T ss_pred ccccccCCCCchhhhhhcccc-----cccC-CchhccccccccCCCchhhhc-------cc-----------------cc
Confidence 998776432211111111100 0001 122356789999998755211 00 11
Q ss_pred ceeEecCCCCCCCCccccCCccEEE-EEcCC--CCCccceEEEEEEEEeeccccCCcceeEEEEEEEecCccccccc---
Q 003011 628 QFSICLPGNGIPDWFSYQSLGTSIT-IQLPQ--CNRRFIGLALSVVIEFEEVFYGGYSFGVRCEYQFETETLSGNQK--- 701 (857)
Q Consensus 628 ~~~~~lpg~~iP~Wf~~~~~g~sv~-i~lp~--~~~~~~g~~~c~v~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~--- 701 (857)
...+++||.++|+||.||+.|++++ |.+|+ ....|.||++|+|+++.........+++.|.|+|+++.+.....
T Consensus 955 ~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 1034 (1153)
T PLN03210 955 FKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQ 1034 (1153)
T ss_pred ceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccccCCC
Confidence 2347899999999999999999998 99988 45679999999999987654444578899999999865432110
Q ss_pred -CCceecccccCCccccccccCcceEEEEEEcCCCccC----CCCCCcceEEEEEEEeecCCccccccccEEEEeeeeee
Q 003011 702 -GNWVCYLTSASDYKVEDLLIYSNHVLLGFDPCLNIQL----PDGDLHATATFHFSLLCDDCITENRIGCKVKCIGVCPL 776 (857)
Q Consensus 702 -~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~~~~~~~----~~~~~~~~~~f~f~~~~~~~~~~~~~~~~vk~cGv~~i 776 (857)
+.|. .....+|+++|... ..... ..+-.+++++|+|+.++ .. ..++|++|||+++
T Consensus 1035 ~~~~~-------------~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~-~~-----~~~~~~~cg~~~~ 1094 (1153)
T PLN03210 1035 PHVFS-------------VTKKGSHLVIFDCC-FPLNEDNAPLAELNYDHVDIQFRLTN-KN-----SQLKLKGCGIRLS 1094 (1153)
T ss_pred ceeEe-------------eeccccceEEeccc-ccccccccchhccCCceeeEEEEEec-CC-----CCeEEEeeeEEEe
Confidence 1111 12345566654322 11111 01115888999998872 11 2479999999999
Q ss_pred ccC
Q 003011 777 TAN 779 (857)
Q Consensus 777 ~~~ 779 (857)
|+.
T Consensus 1095 ~~~ 1097 (1153)
T PLN03210 1095 EDD 1097 (1153)
T ss_pred ccC
Confidence 964
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-42 Score=406.95 Aligned_cols=279 Identities=26% Similarity=0.299 Sum_probs=217.2
Q ss_pred CchHHHHHHhcCCChHHHHHHHhhhcCC-CHHHHHHHHHHHhhc-----C--ChhHHHHHHHhHhccCHHHHHHhhhhhc
Q 003011 1 MVLSTRVVDYAKGNPLALKVLGSFFYGR-RKVDWENALHNLKRI-----S--DRDVYEVLKISYDELNWEEKNIFLDIAC 72 (857)
Q Consensus 1 ~~l~~~iv~~c~GlPLAlkvlG~~L~~k-~~~~W~~~l~~L~~~-----~--~~~i~~~Lk~SYd~L~~~~K~cFl~~a~ 72 (857)
+++||+||++|+|||||++|+|+.|+.| +.+||+.+.+.++.. + ++.|.++|++|||+||++.|.||||||.
T Consensus 342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycal 421 (889)
T KOG4658|consen 342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCAL 421 (889)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhcc
Confidence 3689999999999999999999999998 778999999998764 2 3569999999999999999999999999
Q ss_pred CCCCC--CHHHHHHHhcCCCc-------------hHHHHHHhhcccceeeecC----CeEeccHHHHHHHHHHhhhccCC
Q 003011 73 FFKGE--DKDYVTRIQDDPDF-------------VRYVLNVLVNKSLITISSY----NKLEMHDLLEEMGREIVRCESVK 133 (857)
Q Consensus 73 Fp~~~--~~~~l~~~~~~~g~-------------~~~~l~~Li~rsLi~~~~~----~~~~MHDLl~dl~~~i~~~e~~~ 133 (857)
||+|| +++.++..|+|||| |..|+.+|++++|++.... .+|+|||++||||.+++.+...+
T Consensus 422 FPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~ 501 (889)
T KOG4658|consen 422 FPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQ 501 (889)
T ss_pred CCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhcccccc
Confidence 99999 79999999999997 8999999999999998742 67999999999999999854422
Q ss_pred CCCcceeecccc-chhhhcccCcccCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCc-cc
Q 003011 134 EPGKRSRLWHHE-DIYHVLKKNKGTDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNG-LD 211 (857)
Q Consensus 134 ~~~~~~rl~~~~-di~~vl~~~~~~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~-l~ 211 (857)
... ...... ...+ ..+......++++++.......+.-. ...++|++|-+.+|.. ....++.+ |.
T Consensus 502 ~e~---~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~----~~~~~L~tLll~~n~~-----~l~~is~~ff~ 568 (889)
T KOG4658|consen 502 EEN---QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGS----SENPKLRTLLLQRNSD-----WLLEISGEFFR 568 (889)
T ss_pred ccc---eEEECCcCccc-cccccchhheeEEEEeccchhhccCC----CCCCccceEEEeecch-----hhhhcCHHHHh
Confidence 221 111111 0111 12223345677777776655333222 1334799999988751 13444444 44
Q ss_pred cccCCeeEEEEeCCC-CCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCC-CCCcccee
Q 003011 212 YLSDELRYLHWHGYP-LKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPL-ETPNLERI 288 (857)
Q Consensus 212 ~l~~~Lr~L~l~~~~-l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~-~l~~L~~L 288 (857)
.+ +.||+||+++|. +..+|..+ .+-+||+|+|+++.++.+|.++++|+.|.+|++..+..+..+|.+. .+++||+|
T Consensus 569 ~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 569 SL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 45 589999999765 78899988 7999999999999999999999999999999999888777777544 48888888
Q ss_pred eccCC
Q 003011 289 CLSDC 293 (857)
Q Consensus 289 ~L~~~ 293 (857)
.+..-
T Consensus 648 ~l~~s 652 (889)
T KOG4658|consen 648 RLPRS 652 (889)
T ss_pred Eeecc
Confidence 88653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4e-34 Score=358.94 Aligned_cols=412 Identities=19% Similarity=0.225 Sum_probs=269.2
Q ss_pred ccCCCCCcceeeccccchhhhcccCc--ccCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecC
Q 003011 130 ESVKEPGKRSRLWHHEDIYHVLKKNK--GTDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLH 207 (857)
Q Consensus 130 e~~~~~~~~~rl~~~~di~~vl~~~~--~~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~ 207 (857)
+.+.+|.++.+.|+..+.+..+.... ....|+.+.+..+.+ ....+.+|..+++|++|++++|. ....+|
T Consensus 39 ~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~------~~~~ip 110 (968)
T PLN00113 39 SSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQ------LSGPIP 110 (968)
T ss_pred HhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCc------cCCcCC
Confidence 33455777778887544322222211 133566665554433 22336789999999999999988 445677
Q ss_pred CccccccCCeeEEEEeCCCCCC-CCCCCCCCCccEEEcCCCCCc-ccccCcCCCCCccEEEccCCCCCccCC-CCCCCCc
Q 003011 208 NGLDYLSDELRYLHWHGYPLKT-LPSNFSPENLIELNLPYSKVE-QMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPN 284 (857)
Q Consensus 208 ~~l~~l~~~Lr~L~l~~~~l~~-lp~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~ 284 (857)
.++.....+||+|++++|.+.. +|. ..+++|++|+|++|.+. .+|..++.+++|++|+|++|.+...+| .+.++++
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 189 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189 (968)
T ss_pred hHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcC
Confidence 7766333689999999888764 343 35778888888888886 677778888888888888888777777 5788888
Q ss_pred cceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCccccccc---CcceEEecC
Q 003011 285 LERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQFSG---NIKQLYLCG 360 (857)
Q Consensus 285 L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~ 360 (857)
|++|+|++|...+.+|..++++++|+.|++++|.....+|..+ .+++|++|++++|.....+|..++ +|+.|++++
T Consensus 190 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 269 (968)
T PLN00113 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269 (968)
T ss_pred CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcC
Confidence 8888888888888888888888888888888876666777666 778888888888876666665433 667778887
Q ss_pred ccce-ecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccc-cCC
Q 003011 361 TAIE-EVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQ-EQP 438 (857)
Q Consensus 361 ~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~-~lp 438 (857)
|.+. .+|.++..+++|++|++++|...+.+|..+..+++|+.|++++|...+..|..+..+++|+.|++++|.+. .+|
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 7776 46667777777888888777777777777777777777777777777777777777777777777777766 444
Q ss_pred CCcccccCcCCcceeeccccCCc--CCC-CC------------------------CCCCCcEEEeeCCCCcc-CCCcCCC
Q 003011 439 SSNEDRILPSSIANWSYGCRGLI--LPP-LP------------------------GLSSLTGLNLSFRNITE-IPKDIGC 490 (857)
Q Consensus 439 ~~~~~~~lp~~L~~L~l~~~~~~--~~~-l~------------------------~l~~L~~L~Ls~n~l~~-lp~~l~~ 490 (857)
..+.. + ++|+.|+++.+... .|. +. .+++|+.|++++|++++ +|..+..
T Consensus 350 ~~l~~--~-~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 426 (968)
T PLN00113 350 KNLGK--H-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK 426 (968)
T ss_pred hHHhC--C-CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence 44332 2 55666666444321 121 33 44444455555444443 4444444
Q ss_pred CCCCCeeeCCCCcce-eccccccCCCCCcEEecccccccccCCCC--CCCcceeecccccCCCccc
Q 003011 491 LSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSNCNLLQSLPEL--PPSLILLEARNCKQLQSLP 553 (857)
Q Consensus 491 l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~i~~C~~L~~l~ 553 (857)
+++|+.|++++|.+. .+|..+..+++|+.|++++|+....+|.. .++|+.|++++|.-...+|
T Consensus 427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccC
Confidence 555555555555544 33334444555555555555554444432 2345555555554433333
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-32 Score=339.85 Aligned_cols=369 Identities=19% Similarity=0.221 Sum_probs=198.2
Q ss_pred ChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCC-CCCCCC-CCCCccEEEcCCCCCc-cc
Q 003011 176 SSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLK-TLPSNF-SPENLIELNLPYSKVE-QM 252 (857)
Q Consensus 176 ~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~Ls~n~l~-~l 252 (857)
.+..|.++++|++|++++|. ....+|..+..+ ++|++|++++|.+. .+|..+ .+++|++|+|++|.+. .+
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~------l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNV------LVGKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CChHHhcCCCCCEEECccCc------ccccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 34567777777777777776 344566666666 46777777777654 446655 6677777777777665 45
Q ss_pred ccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCC
Q 003011 253 WEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFR 330 (857)
Q Consensus 253 ~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~ 330 (857)
|..+..+++|++|+|++|.+...+| .+.++++|++|++++|...+.+|.+++++++|+.|++++|.....+|..+ .++
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 6666667777777777766655555 56666666666666666666666666666666666666655444555444 555
Q ss_pred CCcEEEcCCCCCCCcccccc---cCcceEEecCccce-ecCccccCCCcceEEEccCcccc-------------------
Q 003011 331 SPITLDFSDCLNLTEFPQFS---GNIKQLYLCGTAIE-EVPSSVECLTELAELYMRQCTRL------------------- 387 (857)
Q Consensus 331 ~L~~L~Ls~~~~l~~~p~~~---~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l------------------- 387 (857)
+|+.|++++|......|..+ .+|+.|++++|.+. .+|..++.+++|+.|++++|...
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 56666665554444443322 24445555554444 24444444444444444444443
Q ss_pred -----ccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCC--
Q 003011 388 -----KSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGL-- 460 (857)
Q Consensus 388 -----~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~-- 460 (857)
+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++..+..... -.++|+.|+++.+..
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFG 466 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc--cCCCCcEEECcCceeee
Confidence 33444444445555555555555444555555555555555555554432211100 114445555433322
Q ss_pred cCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcce-eccccccCCCCCcEEecccccccccCCCC---C
Q 003011 461 ILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSNCNLLQSLPEL---P 535 (857)
Q Consensus 461 ~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~ 535 (857)
.+|...+.++|+.|++++|++.+ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.....+|.. .
T Consensus 467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 12222233445555555555543 4444555555555555555544 44555555555555555555555444421 2
Q ss_pred CCcceeecccccCCCccc
Q 003011 536 PSLILLEARNCKQLQSLP 553 (857)
Q Consensus 536 ~sL~~L~i~~C~~L~~l~ 553 (857)
++|+.|++++|.-...+|
T Consensus 547 ~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred ccCCEEECCCCcccccCC
Confidence 345555555554444443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=3.7e-28 Score=260.42 Aligned_cols=313 Identities=19% Similarity=0.176 Sum_probs=152.5
Q ss_pred CeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeecc
Q 003011 216 ELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLS 291 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~ 291 (857)
+|+.+++.+|.++.+|... ...+|+.|+|.+|.|..+- +.++.++.|+.|||+.|.+ ..+| .|..-.++++|+|+
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i-s~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI-SEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh-hcccCCCCCCCCCceEEeec
Confidence 4444444444444444443 3333444444444444332 2334444444444444432 2222 34444444444444
Q ss_pred CCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCCc-c--cccccCcceEEecCccceec
Q 003011 292 DCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLTE-F--PQFSGNIKQLYLCGTAIEEV 366 (857)
Q Consensus 292 ~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~~-~--p~~~~~L~~L~L~~~~l~~l 366 (857)
+|.+...-...|..+.+|..|.|+. +.++.+|... .++.|+.|+|..|..-.. . ...+.+|+.|.|..|.+..+
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 4444444444444444444444444 2333444332 244444444444321100 0 11222444555555555554
Q ss_pred Ccc-ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCccccc
Q 003011 367 PSS-VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRI 445 (857)
Q Consensus 367 p~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~ 445 (857)
.++ +-.+.++++|+|..|.....-..++.+|++|+.|+++.|.+...-++.++..++|+.|+|+.|+|+.+++..+.
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~-- 338 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR-- 338 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH--
Confidence 443 33455555555555544444444455555555555555555555555555555555555555555555443332
Q ss_pred CcCCcceeeccccCCcCC---CCCCCCCCcEEEeeCCCCcc-C---CCcCCCCCCCCeeeCCCCcceeccc-cccCCCCC
Q 003011 446 LPSSIANWSYGCRGLILP---PLPGLSSLTGLNLSFRNITE-I---PKDIGCLSSLRTLDLRGNNFVSLPA-SIKQFTQM 517 (857)
Q Consensus 446 lp~~L~~L~l~~~~~~~~---~l~~l~~L~~L~Ls~n~l~~-l---p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 517 (857)
....|+.|.++.+...-. .|.++.+|++|+|++|.+.. + ...+.++++|+.|++.||++..+|. .+..+..|
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCccc
Confidence 114444444444433221 15566777777777776654 2 2335557777777777777776663 46667777
Q ss_pred cEEecccccccccCC
Q 003011 518 EELILSNCNLLQSLP 532 (857)
Q Consensus 518 ~~L~L~~c~~l~~lp 532 (857)
+.|+|.+|.+...-|
T Consensus 419 E~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 419 EHLDLGDNAIASIQP 433 (873)
T ss_pred ceecCCCCcceeecc
Confidence 777777766554444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=6e-29 Score=267.33 Aligned_cols=334 Identities=20% Similarity=0.232 Sum_probs=175.6
Q ss_pred hhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCc--ccccC
Q 003011 179 AFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVE--QMWEG 255 (857)
Q Consensus 179 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~--~l~~~ 255 (857)
....|+.++.|.|.... ...+|+.+..+ .+|++|.+.+|++.++-... .++.||.++++.|+++ .+|..
T Consensus 27 ~v~qMt~~~WLkLnrt~-------L~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d 98 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTK-------LEQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD 98 (1255)
T ss_pred hHHHhhheeEEEechhh-------hhhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch
Confidence 34456666666665443 34455556555 46666666666666655554 5666666666666655 45666
Q ss_pred cCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCC-cccCCCCCcEEeccCCCCCcccCCCC-CCCCC
Q 003011 256 KKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPS-SIENFNNLSILCLQGCESLRRFPSNI-HFRSP 332 (857)
Q Consensus 256 ~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~-~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L 332 (857)
+-.+..|.+||||+|+ +++.| .+....++-.|+|++|++ ..+|. -+-+++.|-.|+|++ +.+..+|+.+ .+..|
T Consensus 99 iF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 99 IFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSML 175 (1255)
T ss_pred hcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhh
Confidence 6666666666666665 44455 566666666666666443 33333 334566666666655 4556666655 56666
Q ss_pred cEEEcCCCCCC----CcccccccCcceEEecCccce--ecCccccCCCcceEEEccCccccccccccccCCCCCCEeecc
Q 003011 333 ITLDFSDCLNL----TEFPQFSGNIKQLYLCGTAIE--EVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLD 406 (857)
Q Consensus 333 ~~L~Ls~~~~l----~~~p~~~~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls 406 (857)
++|.|++|+.. +.+| .+.+|+.|.++++.-+ .+|.++..+.+|..++++.| .+..+|..+..+++|+.|+|+
T Consensus 176 qtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccC
Confidence 66666665432 2222 2234555555554322 45666666666666666554 344455556666666666666
Q ss_pred CCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcC---CC-CCCCCCCcEEEeeCCCCc
Q 003011 407 DCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLIL---PP-LPGLSSLTGLNLSFRNIT 482 (857)
Q Consensus 407 ~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~---~~-l~~l~~L~~L~Ls~n~l~ 482 (857)
+|.+.+. ....+...+|+.|+++.|+++.+|..+.. + +.|+.|.++.+.+.+ |+ ++.+..|+.+..++|.+.
T Consensus 254 ~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcK--L-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 254 GNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCK--L-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred cCceeee-eccHHHHhhhhhhccccchhccchHHHhh--h-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 6544432 22233344555666666666666555433 2 344444444433322 11 444444444444444444
Q ss_pred cCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccc
Q 003011 483 EIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 483 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 529 (857)
-.|+.+..++.|+.|.|+.|.+..+|+.|.-++-|+.||+..|+.+.
T Consensus 330 lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 44444444444444444444444444444444444444444444443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=8.2e-29 Score=266.31 Aligned_cols=360 Identities=20% Similarity=0.311 Sum_probs=308.1
Q ss_pred CCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCC
Q 003011 183 MTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFK 261 (857)
Q Consensus 183 l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 261 (857)
++-.|-.++++|.+ ....+|.....+ .++++|.|....+..+|... .+.+|++|.+++|++.++-..+..++.
T Consensus 6 LpFVrGvDfsgNDF-----sg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDF-----SGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR 79 (1255)
T ss_pred cceeecccccCCcC-----CCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh
Confidence 34456667777763 236789999998 69999999999999999998 999999999999999999999999999
Q ss_pred ccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEc
Q 003011 262 LKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDF 337 (857)
Q Consensus 262 L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L 337 (857)
||.+++++|++-. -+| ++..+..|..|||++| .+.++|..+...+++-.|+|++ +++.++|..+ +++-|-.|+|
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcc
Confidence 9999999998543 366 8999999999999995 5778999999999999999998 6788899876 8999999999
Q ss_pred CCCCCCCccccccc---CcceEEecCccceecC-ccccCCCcceEEEccCcccc-ccccccccCCCCCCEeeccCCCCCC
Q 003011 338 SDCLNLTEFPQFSG---NIKQLYLCGTAIEEVP-SSVECLTELAELYMRQCTRL-KSISSRICKLKSLHLLSLDDCCRLE 412 (857)
Q Consensus 338 s~~~~l~~~p~~~~---~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~Ls~~~~~~ 412 (857)
++| .++.+|.... +|++|.|++|.+.... ..+..+++|+.|.+++...+ ..+|.++..+.+|..++++.|. +.
T Consensus 158 S~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp 235 (1255)
T KOG0444|consen 158 SNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LP 235 (1255)
T ss_pred ccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CC
Confidence 997 5777776543 7889999999876421 12345788889999887654 5689999999999999999875 45
Q ss_pred ccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcC-CC-CCCCCCCcEEEeeCCCCcc--CCCcC
Q 003011 413 RFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLIL-PP-LPGLSSLTGLNLSFRNITE--IPKDI 488 (857)
Q Consensus 413 ~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~-~~-l~~l~~L~~L~Ls~n~l~~--lp~~l 488 (857)
.+|+.+-++++|+.|+|++|.|+++...... + .+|++|+++.+.+.. |. +..++.|+.|.+.+|+++- +|..+
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~--W-~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGI 312 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNMTEGE--W-ENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGI 312 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeeccHHH--H-hhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccch
Confidence 6899999999999999999999988776655 3 789999998887754 44 8999999999999998764 99999
Q ss_pred CCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCCC---CCCCcceeecccccCCCcccCcc
Q 003011 489 GCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLPE---LPPSLILLEARNCKQLQSLPELS 556 (857)
Q Consensus 489 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~C~~L~~l~~~~ 556 (857)
+.+.+|+.+..++|.++-+|+++..+..|+.|.|+.|+.++ +|+ +.+-|+.|+++++++|.--|.+.
T Consensus 313 GKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 313 GKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred hhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 99999999999999999999999999999999999988654 775 66889999999999998777653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.5e-27 Score=252.91 Aligned_cols=348 Identities=18% Similarity=0.148 Sum_probs=288.5
Q ss_pred EeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC--CCCCccE
Q 003011 164 FLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF--SPENLIE 241 (857)
Q Consensus 164 ~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~ 241 (857)
.||+++++..+++...|.++++|+.+++..|.+ ..+|...... .+|+.|+|.+|.|.++...- .+..|+.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L-------t~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL-------TRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchh-------hhcccccccc-cceeEEeeeccccccccHHHHHhHhhhhh
Confidence 488888888899999999999999999999873 4455544444 68999999999999886543 7899999
Q ss_pred EEcCCCCCcccccC-cCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCC
Q 003011 242 LNLPYSKVEQMWEG-KKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCES 319 (857)
Q Consensus 242 L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~ 319 (857)
|||+.|.|..+|.. +..-.++++|+|++|++...-. .|..+.+|-+|.|+.|.+...-+.+|.+|++|+.|+|..| .
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~ 232 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-R 232 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-c
Confidence 99999999999844 4556899999999999654433 6888999999999998887777778888999999999884 4
Q ss_pred CcccCC-CC-CCCCCcEEEcCCCCCCCcccc----cccCcceEEecCccceecCc-cccCCCcceEEEccCccccccccc
Q 003011 320 LRRFPS-NI-HFRSPITLDFSDCLNLTEFPQ----FSGNIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISS 392 (857)
Q Consensus 320 l~~lp~-~~-~l~~L~~L~Ls~~~~l~~~p~----~~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~ 392 (857)
++.... .+ ++++|+.|.|..|. +..+.+ .+.++++|+|..|.+..+.. |+-+++.|+.|++++|.+...-+.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 444322 22 89999999998874 333333 34589999999999998865 478899999999999999888888
Q ss_pred cccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc------CCCCC
Q 003011 393 RICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI------LPPLP 466 (857)
Q Consensus 393 ~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~------~~~l~ 466 (857)
.....++|++|+|+.|.+...-+..|..+..|+.|+|+.|.+..+....+. .-++|+.|++..+.+. ...+.
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~--~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV--GLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH--HhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 888899999999999999998889999999999999999999988777665 3489999999776542 12388
Q ss_pred CCCCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcceec-cccccCCCCCcEEeccc
Q 003011 467 GLSSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFVSL-PASIKQFTQMEELILSN 524 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~ 524 (857)
++++|+.|.+.+|++..+| ..+.++++|+.|+|.+|.|.++ |..+..+ .|++|.+..
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 8999999999999999988 6899999999999999998866 4566777 888887754
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=2.7e-24 Score=270.63 Aligned_cols=312 Identities=26% Similarity=0.419 Sum_probs=263.6
Q ss_pred hhcCC-CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCC-CCcccccC
Q 003011 179 AFACM-TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYS-KVEQMWEG 255 (857)
Q Consensus 179 ~f~~l-~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n-~l~~l~~~ 255 (857)
.|..+ .+||.|.+.++. ...+|..+. +.+|+.|++.++.++.+|..+ .+++|+.|+|+++ .++.+| .
T Consensus 583 ~~~~lp~~Lr~L~~~~~~-------l~~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ 652 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYP-------LRCMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D 652 (1153)
T ss_pred chhhcCcccEEEEecCCC-------CCCCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c
Confidence 45555 579999998876 355676663 379999999999999999888 8999999999987 467777 4
Q ss_pred cCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcE
Q 003011 256 KKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPIT 334 (857)
Q Consensus 256 ~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~ 334 (857)
+..+++|++|+|++|..+..+| .+..+++|+.|++++|..+..+|..+ ++++|+.|++++|..++.+|.. ..+|+.
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~ 729 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISW 729 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCe
Confidence 7889999999999999899998 68999999999999999999999877 8999999999999999888863 578999
Q ss_pred EEcCCCCCCCccccc--ccCcceEEecCccceecCcc--------ccCCCcceEEEccCccccccccccccCCCCCCEee
Q 003011 335 LDFSDCLNLTEFPQF--SGNIKQLYLCGTAIEEVPSS--------VECLTELAELYMRQCTRLKSISSRICKLKSLHLLS 404 (857)
Q Consensus 335 L~Ls~~~~l~~~p~~--~~~L~~L~L~~~~l~~lp~~--------l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 404 (857)
|+++++. +..+|.. +.+|+.|.+.++....++.. ....++|+.|++++|.....+|..++++++|+.|+
T Consensus 730 L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 730 LDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred eecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 9999985 6677764 34788888877443333221 23357899999999999999999999999999999
Q ss_pred ccCCCCCCccccccCCCCCCCEEeccCCc-cccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc
Q 003011 405 LDDCCRLERFPEITETMECLEYFSLASTT-IQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE 483 (857)
Q Consensus 405 Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 483 (857)
+++|..++.+|... .+++|+.|++++|. +..+|. ..++|+.|+|++|.+.+
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---------------------------~~~nL~~L~Ls~n~i~~ 860 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---------------------------ISTNISDLNLSRTGIEE 860 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---------------------------cccccCEeECCCCCCcc
Confidence 99999999998876 78999999999874 333332 23689999999999999
Q ss_pred CCCcCCCCCCCCeeeCCCCc-ceeccccccCCCCCcEEecccccccccCC
Q 003011 484 IPKDIGCLSSLRTLDLRGNN-FVSLPASIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 484 lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
+|.++..+++|+.|+|++|+ ++.+|..+..+++|+.|++++|..+..++
T Consensus 861 iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 861 VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 99999999999999999976 99999999999999999999999887654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=9e-27 Score=240.06 Aligned_cols=259 Identities=20% Similarity=0.251 Sum_probs=215.9
Q ss_pred EeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEE
Q 003011 164 FLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIEL 242 (857)
Q Consensus 164 ~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L 242 (857)
.++++.+....+ .....++..|.+|.+.+|+ ...+|.++..+ ..+..|+.++|.+..+|..+ .+.+|+.|
T Consensus 49 ~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~-------l~~lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 49 KLILSHNDLEVL-REDLKNLACLTVLNVHDNK-------LSQLPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKL 119 (565)
T ss_pred hhhhccCchhhc-cHhhhcccceeEEEeccch-------hhhCCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhh
Confidence 344555533333 4567788899999999887 46678888888 58899999999999999888 88999999
Q ss_pred EcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcc
Q 003011 243 NLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRR 322 (857)
Q Consensus 243 ~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~ 322 (857)
+.++|.+..+|++++.+..|..|+..+|++....+++..+..|..|++.+|..... |+..-+++.|++||... +.++.
T Consensus 120 ~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~-N~L~t 197 (565)
T KOG0472|consen 120 DCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNS-NLLET 197 (565)
T ss_pred hccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccch-hhhhc
Confidence 99999999999999999999999999998665555889999999999999765554 44444599999999876 67889
Q ss_pred cCCCC-CCCCCcEEEcCCCCCCCccccccc--CcceEEecCccceecCcccc-CCCcceEEEccCccccccccccccCCC
Q 003011 323 FPSNI-HFRSPITLDFSDCLNLTEFPQFSG--NIKQLYLCGTAIEEVPSSVE-CLTELAELYMRQCTRLKSISSRICKLK 398 (857)
Q Consensus 323 lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~--~L~~L~L~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~lp~~l~~l~ 398 (857)
+|..+ .+.+|+.|++..| .+..+|++.+ .|++|+++.|.|+.+|.... ++++|..|++.+| .++++|..++.++
T Consensus 198 lP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLr 275 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLR 275 (565)
T ss_pred CChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhh
Confidence 99988 8999999999997 5777887766 68899999999999998865 8999999999998 5678899999999
Q ss_pred CCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccC
Q 003011 399 SLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQ 437 (857)
Q Consensus 399 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~l 437 (857)
+|+.||+++|.+. .+|..++++ .|+.|.+.||.+..+
T Consensus 276 sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 276 SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI 312 (565)
T ss_pred hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH
Confidence 9999999998655 567789999 999999999987543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2e-26 Score=237.46 Aligned_cols=325 Identities=23% Similarity=0.304 Sum_probs=251.1
Q ss_pred eecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEE
Q 003011 165 LDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELN 243 (857)
Q Consensus 165 L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~ 243 (857)
++...++...++++... |+.|+.|+...|- ...+|..+..+ .+|..|++..|.+..+| .| ++..|++|+
T Consensus 165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~-------L~tlP~~lg~l-~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh 234 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIA-MKRLKHLDCNSNL-------LETLPPELGGL-ESLELLYLRRNKIRFLP-EFPGCSLLKELH 234 (565)
T ss_pred hhccccchhhCCHHHHH-HHHHHhcccchhh-------hhcCChhhcch-hhhHHHHhhhcccccCC-CCCccHHHHHHH
Confidence 44455555566666665 9999999998775 56789999988 68999999999999999 56 999999999
Q ss_pred cCCCCCcccccCc-CCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCc
Q 003011 244 LPYSKVEQMWEGK-KESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLR 321 (857)
Q Consensus 244 Ls~n~l~~l~~~~-~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~ 321 (857)
+..|+|+.+|... +++.+|.+|||++|+ +++.| .+..+.+|++||+++|. +..+|.++|++ +|+.|-+.||..-+
T Consensus 235 ~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 235 VGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred hcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCchHH
Confidence 9999999999776 599999999999998 67888 68899999999999865 45689999999 99999998854210
Q ss_pred ------------------------------------------ccCCCCCCCCCcEEEcCCCCCCCcccccc------cCc
Q 003011 322 ------------------------------------------RFPSNIHFRSPITLDFSDCLNLTEFPQFS------GNI 353 (857)
Q Consensus 322 ------------------------------------------~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~------~~L 353 (857)
.+|....+.+.+.|++++ ..+..+|... .-+
T Consensus 312 iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 312 IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcce
Confidence 000101233455555555 2344445321 125
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCc
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTT 433 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~ 433 (857)
...++++|.+.++|..+..+..+++.-+..++..+.+|..++.+++|..|+|++| .+..+|..++.+..|+.|+++.|.
T Consensus 391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~Nr 469 (565)
T KOG0472|consen 391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNR 469 (565)
T ss_pred EEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccc
Confidence 5778888888888887777776666655666677777778888888888888876 556678888888888888888888
Q ss_pred cccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCc-CCCCCCCCeeeCCCCcceecccccc
Q 003011 434 IQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKD-IGCLSSLRTLDLRGNNFVSLPASIK 512 (857)
Q Consensus 434 i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~ 512 (857)
+..+|..... +..|+.+-.++|++..++++ +.++.+|..|||.+|.+..+|..++
T Consensus 470 Fr~lP~~~y~------------------------lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lg 525 (565)
T KOG0472|consen 470 FRMLPECLYE------------------------LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILG 525 (565)
T ss_pred cccchHHHhh------------------------HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhc
Confidence 8877775432 34456666677888887765 8899999999999999999999999
Q ss_pred CCCCCcEEeccccccc
Q 003011 513 QFTQMEELILSNCNLL 528 (857)
Q Consensus 513 ~l~~L~~L~L~~c~~l 528 (857)
++++|++|+|++|++.
T Consensus 526 nmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 526 NMTNLRHLELDGNPFR 541 (565)
T ss_pred cccceeEEEecCCccC
Confidence 9999999999999875
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=7e-25 Score=247.64 Aligned_cols=358 Identities=21% Similarity=0.240 Sum_probs=246.0
Q ss_pred hHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccC
Q 003011 177 SRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEG 255 (857)
Q Consensus 177 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~ 255 (857)
-++..+.-+|+.|++++|. ...+|..+..+ .+|+.|+++.|-+.++|... ++.+|++|+|.+|.+..+|.+
T Consensus 38 l~~~~~~v~L~~l~lsnn~-------~~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~ 109 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQ-------ISSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS 109 (1081)
T ss_pred hHHhhheeeeEEeeccccc-------cccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence 3444445558888888876 45567777777 37888888888888888766 788888888888888888888
Q ss_pred cCCCCCccEEEccCCCCCccCC-CCCCCCc-------------------cceeeccCCccCCccCCcccCCCCCcEEecc
Q 003011 256 KKESFKLKWIDLHHCQYLIRFP-DPLETPN-------------------LERICLSDCIDLPCIPSSIENFNNLSILCLQ 315 (857)
Q Consensus 256 ~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~-------------------L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~ 315 (857)
+..+++|++|++++|.+. .+| -+..+.. ++.+++..+...+.++..+..++. .|+|+
T Consensus 110 ~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr 186 (1081)
T KOG0618|consen 110 ISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLR 186 (1081)
T ss_pred HHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecc
Confidence 888888888888888743 333 3333333 445555555555566666666666 56666
Q ss_pred CCCCC----------cccCC--------CCCCCCCcEEEcCCCCCCCccccc-ccCcceEEecCccceecCccccCCCcc
Q 003011 316 GCESL----------RRFPS--------NIHFRSPITLDFSDCLNLTEFPQF-SGNIKQLYLCGTAIEEVPSSVECLTEL 376 (857)
Q Consensus 316 ~c~~l----------~~lp~--------~~~l~~L~~L~Ls~~~~l~~~p~~-~~~L~~L~L~~~~l~~lp~~l~~l~~L 376 (857)
+|... +.+-- .+..++|+.|+.+.|......+.. ..+|+.++++.|.++.+|+|++.+.+|
T Consensus 187 ~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nl 266 (1081)
T KOG0618|consen 187 YNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANL 266 (1081)
T ss_pred cchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccc
Confidence 64433 11110 013456677777777766544443 348999999999999999999999999
Q ss_pred eEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCc---------
Q 003011 377 AELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILP--------- 447 (857)
Q Consensus 377 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp--------- 447 (857)
+.+...+|.. ..+|..+....+|+.|.+..|.. +.+|...+.+.+|+.|+|..|.+..+|..+... ++
T Consensus 267 e~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v-~~~~l~~ln~s 343 (1081)
T KOG0618|consen 267 EALNANHNRL-VALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAV-LNASLNTLNVS 343 (1081)
T ss_pred eEecccchhH-HhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccccccchHHHhh-hhHHHHHHhhh
Confidence 9999999876 77788888888888888888744 456667778888899999888888888754321 11
Q ss_pred ---------------CCcceeeccccCC---cCCCCCCCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCcceecc
Q 003011 448 ---------------SSIANWSYGCRGL---ILPPLPGLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 448 ---------------~~L~~L~l~~~~~---~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp 508 (857)
+.|+.|++..+.+ .+|.+.++.+|+.|+|++|.+.++|+ .+.+++.|+.|+||||.++.+|
T Consensus 344 ~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp 423 (1081)
T KOG0618|consen 344 SNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP 423 (1081)
T ss_pred hccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh
Confidence 2233333433322 34557888888888888888888884 4678888888888888888777
Q ss_pred ccccC----------------------CCCCcEEeccccccccc-CC-CCC-CCcceeecccccC
Q 003011 509 ASIKQ----------------------FTQMEELILSNCNLLQS-LP-ELP-PSLILLEARNCKQ 548 (857)
Q Consensus 509 ~~l~~----------------------l~~L~~L~L~~c~~l~~-lp-~l~-~sL~~L~i~~C~~ 548 (857)
..+.. ++.|+.+||+.|..... +| ..| ++|++|+++|++.
T Consensus 424 ~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 424 DTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 65544 55555555555554321 22 244 5666666666654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=6.1e-20 Score=215.14 Aligned_cols=260 Identities=19% Similarity=0.223 Sum_probs=159.4
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccC
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDL 296 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~ 296 (857)
-..|+++++.++++|..+. .+|+.|++++|+++.+|.. +++|++|+|++|+ +..+|.+ .++|+.|++++|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~N~L- 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSNPL- 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccCCch-
Confidence 4445555555555555442 3555666666666555532 3555666666654 2334432 24556666655542
Q ss_pred CccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcc
Q 003011 297 PCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTEL 376 (857)
Q Consensus 297 ~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L 376 (857)
..+|.. .++|+.|++++| .++.+|. .+++|+.|++++| .+..+|..+.+|+.|++++|.++.+|.. ..+|
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~L 344 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGL 344 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---cccc
Confidence 233331 234556666653 4455554 2355666666665 3445555555677777777777766642 2466
Q ss_pred eEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeecc
Q 003011 377 AELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYG 456 (857)
Q Consensus 377 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~ 456 (857)
+.|++++|.+. .+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.++.+|..
T Consensus 345 q~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---------------- 400 (788)
T PRK15387 345 QELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---------------- 400 (788)
T ss_pred ceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc----------------
Confidence 77777776544 34432 245666677766544 34443 24677777777777766541
Q ss_pred ccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCC
Q 003011 457 CRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 457 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
.++|+.|++++|.++.+|.. +.+|+.|++++|.|+.+|..+..+++|+.|+|++|+.....|
T Consensus 401 -----------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 -----------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -----------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHH
Confidence 25688888888888888754 346788899999999999888889999999999998766544
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=1e-22 Score=230.24 Aligned_cols=328 Identities=20% Similarity=0.203 Sum_probs=229.6
Q ss_pred ccEEEEecCCccccccceeecCC-ccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCCcc
Q 003011 186 LRMLKFYVPKLSKLSDVKVHLHN-GLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFKLK 263 (857)
Q Consensus 186 Lr~L~l~~n~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 263 (857)
|..|++..|.+ ...|- .+..- -+|+.|++++|.+...|..+ .+.+|+.|+++.|.|..+|....++.+|+
T Consensus 23 ~~~ln~~~N~~-------l~~pl~~~~~~-v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 23 LQILNLRRNSL-------LSRPLEFVEKR-VKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQ 94 (1081)
T ss_pred HHhhhcccccc-------ccCchHHhhhe-eeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcch
Confidence 77777777652 22221 12222 35999999999999999998 88999999999999999999999999999
Q ss_pred EEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCC-------------------CCCccc
Q 003011 264 WIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGC-------------------ESLRRF 323 (857)
Q Consensus 264 ~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c-------------------~~l~~l 323 (857)
+|+|.+|. +..+| .+..+.+|+.|++++|.+ +.+|..+..++.+..+..++| .....+
T Consensus 95 ~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 95 YLNLKNNR-LQSLPASISELKNLQYLDLSFNHF-GPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF 172 (1081)
T ss_pred hheeccch-hhcCchhHHhhhcccccccchhcc-CCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch
Confidence 99999987 67788 799999999999999754 445655555555555555544 333333
Q ss_pred CCCC-CCCCCcEEEcCCCCCC----------CcccccccC----------cceEEecCccceecCccccCCCcceEEEcc
Q 003011 324 PSNI-HFRSPITLDFSDCLNL----------TEFPQFSGN----------IKQLYLCGTAIEEVPSSVECLTELAELYMR 382 (857)
Q Consensus 324 p~~~-~l~~L~~L~Ls~~~~l----------~~~p~~~~~----------L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~ 382 (857)
+..+ .++. .|+|..|... +.+-..... ++.|+.+.|.+.++- ....-.+|++++++
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis 249 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDIS 249 (1081)
T ss_pred hcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecc
Confidence 3333 2222 3555554332 222211122 223333333333211 11223567788888
Q ss_pred CccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-
Q 003011 383 QCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI- 461 (857)
Q Consensus 383 ~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~- 461 (857)
.+. ...+|++++.+.+|+.|...+|.+ ..+|..+..+.+|+.|.+..|.+..+|..... + .+|+.|++..+.+.
T Consensus 250 ~n~-l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~--~-~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 250 HNN-LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEG--L-KSLRTLDLQSNNLPS 324 (1081)
T ss_pred hhh-hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccc--c-ceeeeeeehhccccc
Confidence 774 445678888888899998888877 66777778888889999999988888887653 2 77888888444321
Q ss_pred CCC---------------------------CCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcceecccc-cc
Q 003011 462 LPP---------------------------LPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFVSLPAS-IK 512 (857)
Q Consensus 462 ~~~---------------------------l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~ 512 (857)
+|. =..++.|+.|++.+|.+++ .-+.+.++..|+.|+|++|.+.++|+. +.
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~ 404 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLR 404 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHh
Confidence 111 1234567888888998888 445678899999999999999999965 78
Q ss_pred CCCCCcEEecccccccccCC
Q 003011 513 QFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 513 ~l~~L~~L~L~~c~~l~~lp 532 (857)
++..|+.|+||+|+. +.+|
T Consensus 405 kle~LeeL~LSGNkL-~~Lp 423 (1081)
T KOG0618|consen 405 KLEELEELNLSGNKL-TTLP 423 (1081)
T ss_pred chHHhHHHhcccchh-hhhh
Confidence 899999999999975 3455
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=6.5e-19 Score=206.57 Aligned_cols=264 Identities=18% Similarity=0.203 Sum_probs=191.7
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCcc
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLK 263 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 263 (857)
.+-..|+++++.+ ..+|..+ +.+|+.|++.+|.++.+|.. +++|++|+|++|+++.+|.. .++|+
T Consensus 201 ~~~~~LdLs~~~L-------tsLP~~l---~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGL-------TTLPDCL---PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLL 265 (788)
T ss_pred CCCcEEEcCCCCC-------CcCCcch---hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccc
Confidence 3456677777662 2455544 34688888888888888763 57788888888888887753 35778
Q ss_pred EEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCC
Q 003011 264 WIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNL 343 (857)
Q Consensus 264 ~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l 343 (857)
.|+|++|. +..+|.+ ..+|+.|++++|.. ..+|. .+++|+.|++++| .+..+|.. ..+|+.|++++| .+
T Consensus 266 ~L~Ls~N~-L~~Lp~l--p~~L~~L~Ls~N~L-t~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L 334 (788)
T PRK15387 266 ELSIFSNP-LTHLPAL--PSGLCKLWIFGNQL-TSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QL 334 (788)
T ss_pred eeeccCCc-hhhhhhc--hhhcCEEECcCCcc-ccccc---cccccceeECCCC-ccccCCCC--cccccccccccC-cc
Confidence 88888886 4455542 25677888888654 34554 2467888888875 55666652 346777888876 45
Q ss_pred CcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCC
Q 003011 344 TEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMEC 423 (857)
Q Consensus 344 ~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~ 423 (857)
..+|....+|+.|+|++|.++.+|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|.+.. +|.. .++
T Consensus 335 ~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 335 TSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred ccccccccccceEecCCCccCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 66777777889999999999888864 356778888887654 46643 3578999999987664 5543 367
Q ss_pred CCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCc
Q 003011 424 LEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNN 503 (857)
Q Consensus 424 L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~ 503 (857)
|+.|++++|.++.+|.. +.+|+.|++++|+++.+|..+..+++|+.|+|++|+
T Consensus 404 L~~LdLS~N~LssIP~l---------------------------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 404 LKELMVSGNRLTSLPML---------------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCEEEccCCcCCCCCcc---------------------------hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence 99999999999888752 246788999999999999999999999999999999
Q ss_pred ce-eccccc
Q 003011 504 FV-SLPASI 511 (857)
Q Consensus 504 l~-~lp~~l 511 (857)
|+ ..|..+
T Consensus 457 Ls~~~~~~L 465 (788)
T PRK15387 457 LSERTLQAL 465 (788)
T ss_pred CCchHHHHH
Confidence 88 344333
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2e-17 Score=195.50 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=75.7
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCC-CCCCCccceeeccCCcc
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPD-PLETPNLERICLSDCID 295 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~-l~~l~~L~~L~L~~~~~ 295 (857)
...|+++++.++++|..+ +++|+.|+|++|+++.+|..+. .+|++|++++|. +..+|. + .++|+.|+|++|..
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l--~~~L~~L~Ls~N~L 253 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATL--PDTIQEMELSINRI 253 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhh--hccccEEECcCCcc
Confidence 344444444444444432 2344444444444444443332 244444444444 223331 1 12444455544433
Q ss_pred CCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCccccc-ccCcceEEecCccceecCccccCCC
Q 003011 296 LPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQF-SGNIKQLYLCGTAIEEVPSSVECLT 374 (857)
Q Consensus 296 ~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~-~~~L~~L~L~~~~l~~lp~~l~~l~ 374 (857)
. .+|..+. ++|+.|++++ +.++.+|..+ .++|+.|++++| .+..+|.. ..+|+.|++++|.++.+|..+ .+
T Consensus 254 ~-~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~ 325 (754)
T PRK15370 254 T-ELPERLP--SALQSLDLFH-NKISCLPENL-PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETL--PP 325 (754)
T ss_pred C-cCChhHh--CCCCEEECcC-CccCcccccc-CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccc--cc
Confidence 2 3444332 3455555543 3344444432 134555555554 23333322 124555555666555555433 24
Q ss_pred cceEEEccCccccccccccccCCCCCCEeeccCCC
Q 003011 375 ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCC 409 (857)
Q Consensus 375 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~ 409 (857)
+|+.|++++|... .+|..+. ++|+.|++++|.
T Consensus 326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~ 357 (754)
T PRK15370 326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQ 357 (754)
T ss_pred cceeccccCCccc-cCChhhc--CcccEEECCCCC
Confidence 5555555555332 2333221 344444444443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=7.6e-17 Score=190.60 Aligned_cols=245 Identities=16% Similarity=0.254 Sum_probs=167.8
Q ss_pred CCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEecc
Q 003011 237 ENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQ 315 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~ 315 (857)
.+...|+++++.++.+|..+. ++|+.|+|++|.+ ..+| .+. ++|++|++++|.. ..+|..+. .+|+.|+|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~L-tsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNEL-KSLPENLQ--GNIKTLYANSNQL-TSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCC-CcCChhhc--cCCCEEECCCCcc-ccCChhhh--ccccEEECc
Confidence 567899999999999997664 5899999999974 4666 333 5899999998764 46776554 478899998
Q ss_pred CCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccc-cCcceEEecCccceecCccccCCCcceEEEccCccccccccccc
Q 003011 316 GCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFS-GNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRI 394 (857)
Q Consensus 316 ~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~-~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 394 (857)
+| .+..+|..+ ..+|+.|++++| .+..+|..+ .+|+.|++++|.++.+|..+. ++|+.|++++|... .+|..+
T Consensus 250 ~N-~L~~LP~~l-~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 250 IN-RITELPERL-PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred CC-ccCcCChhH-hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCccc
Confidence 85 455777654 346788888765 444566533 367777777777777765442 45677777776544 344333
Q ss_pred cCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEE
Q 003011 395 CKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGL 474 (857)
Q Consensus 395 ~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L 474 (857)
.++|+.|++++|.+.. +|..+. ++|+.|++++|.++.+|..+ .++|+.|
T Consensus 324 --~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l--------------------------p~~L~~L 372 (754)
T PRK15370 324 --PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL--------------------------PPTITTL 372 (754)
T ss_pred --cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh--------------------------cCCcCEE
Confidence 2566677777665443 444332 56666777666666555421 2578888
Q ss_pred EeeCCCCccCCCcCCCCCCCCeeeCCCCcceecccccc----CCCCCcEEeccccccc
Q 003011 475 NLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIK----QFTQMEELILSNCNLL 528 (857)
Q Consensus 475 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~----~l~~L~~L~L~~c~~l 528 (857)
+|++|+++.+|..+. .+|+.|++++|+++.+|..+. .++.+..|+|.+|+..
T Consensus 373 dLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 373 DVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred ECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 888888888877653 368888888888887776543 3477888888888753
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.64 E-value=1e-17 Score=173.53 Aligned_cols=310 Identities=16% Similarity=0.150 Sum_probs=201.9
Q ss_pred ccCCeeEEEEeCCCCCCCCCC-C-CCCCccEEEcCCCCCccc-ccCcCCCCCccEEEccCCCCCccCC--CCCCCCccce
Q 003011 213 LSDELRYLHWHGYPLKTLPSN-F-SPENLIELNLPYSKVEQM-WEGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLER 287 (857)
Q Consensus 213 l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~ 287 (857)
+|..-..++|..|.|++||+. | .+++||.|||++|+|+.+ |+.++.+..|..|-+.+++.++.+| .|.++..|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 456778888888889888664 5 888899999999988876 5778888888888777755577787 5888888888
Q ss_pred eeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCC------------ccccccc--
Q 003011 288 ICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLT------------EFPQFSG-- 351 (857)
Q Consensus 288 L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~------------~~p~~~~-- 351 (857)
|.+.-|...-.....+..+++|..|.+.+ +.++.++... .+..++++.+..|.... ..|...+
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 88888777666677788888888888877 4566666533 67777777766655211 1111000
Q ss_pred -----------------------Ccce----EEecCccceecCc-cccCCCcceEEEccCccccccccccccCCCCCCEe
Q 003011 352 -----------------------NIKQ----LYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLHLL 403 (857)
Q Consensus 352 -----------------------~L~~----L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 403 (857)
.++. +....+.....|. .+..+++|+.|++++|++...-+.+|..+..+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 0110 1111111112222 26678888888888888877777788888888888
Q ss_pred eccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeec-----cccC--------------CcCCC
Q 003011 404 SLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSY-----GCRG--------------LILPP 464 (857)
Q Consensus 404 ~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l-----~~~~--------------~~~~~ 464 (857)
.|..|++...-...|.++..|+.|+|.+|+|+.+....+. --.+|.+|.+ .|+- ...|.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc--ccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 8888877766667778888888888888888866555443 1245556655 1110 11222
Q ss_pred CCCCCCCcEEEeeCCCCcc----CCCcCCC-------------------------------CCCCCeeeCCCCcceeccc
Q 003011 465 LPGLSSLTGLNLSFRNITE----IPKDIGC-------------------------------LSSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 465 l~~l~~L~~L~Ls~n~l~~----lp~~l~~-------------------------------l~~L~~L~Ls~n~l~~lp~ 509 (857)
-+....++.+.+++..+.+ .|++.+. ...-.+|++.+|.++.+|.
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~ 461 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPD 461 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCH
Confidence 3333445555555443322 1111100 1234567888888888887
Q ss_pred cccCCCCCcEEeccccccc
Q 003011 510 SIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 510 ~l~~l~~L~~L~L~~c~~l 528 (857)
. .+.+| .+|+++|+..
T Consensus 462 ~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 462 E--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred H--HHhhh-hcccccCcee
Confidence 7 67777 8888888754
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=3.2e-16 Score=162.59 Aligned_cols=354 Identities=18% Similarity=0.155 Sum_probs=213.2
Q ss_pred EEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC--CCC
Q 003011 160 IEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF--SPE 237 (857)
Q Consensus 160 i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~ 237 (857)
...|.||.+. ...+++.+|+.+++||.|+|+.|. +...-|+.|..++.-++.+.+++|.|+.+|... ++.
T Consensus 69 tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~------Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 69 TVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNN------ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred ceEEEeccCC--cccCChhhccchhhhceecccccc------hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3445555554 467899999999999999999999 566678899999644555555669999999875 899
Q ss_pred CccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccC------------CccCCc
Q 003011 238 NLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDL------------PCIPSS 302 (857)
Q Consensus 238 ~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~------------~~~p~~ 302 (857)
.|+-|.+.-|++.-++ +.+..+++|..|.+.+|.+ ..++ .+..+..++++.+..|... ...|..
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie 219 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE 219 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh
Confidence 9999999999998665 5568899999999999874 4454 5888888999888876622 122222
Q ss_pred ccCCCCCcEEeccC-------------------------CCCCcccCCC-C-CCCCCcEEEcCCCCCCCcccc---cccC
Q 003011 303 IENFNNLSILCLQG-------------------------CESLRRFPSN-I-HFRSPITLDFSDCLNLTEFPQ---FSGN 352 (857)
Q Consensus 303 i~~l~~L~~L~L~~-------------------------c~~l~~lp~~-~-~l~~L~~L~Ls~~~~l~~~p~---~~~~ 352 (857)
++.+.-..-..+.+ |......|.. + .+++|++|++++|.....-+. ....
T Consensus 220 tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 220 TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 22222222111111 1111111111 1 566666677766643322222 2235
Q ss_pred cceEEecCccceecCcc-ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCC-----cccccc--------
Q 003011 353 IKQLYLCGTAIEEVPSS-VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLE-----RFPEIT-------- 418 (857)
Q Consensus 353 L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~-----~~~~~l-------- 418 (857)
+++|+|..|.+..+... +..+..|+.|+|.+|++....|..|..+.+|.+|+|-.|+..- -+.+.+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 66666666666665443 5566666666666666666666666666666666666554321 000000
Q ss_pred ---CCCCCCCEEeccCCccccCCCCc----cc---ccCcCCcceeec--cccC--CcCCCCCCCCCCcEEEeeCCCCccC
Q 003011 419 ---ETMECLEYFSLASTTIQEQPSSN----ED---RILPSSIANWSY--GCRG--LILPPLPGLSSLTGLNLSFRNITEI 484 (857)
Q Consensus 419 ---~~l~~L~~L~L~~n~i~~lp~~~----~~---~~lp~~L~~L~l--~~~~--~~~~~l~~l~~L~~L~Ls~n~l~~l 484 (857)
+....++.+.+++..+.+..... .. ...|+.=.-++- .|.. +...+-+-...-++|++.+|.++.+
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~v 459 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSV 459 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhccc
Confidence 11123444444443333211110 00 000000000000 1111 1111111123467899999999999
Q ss_pred CCcCCCCCCCCeeeCCCCcceeccc-cccCCCCCcEEecccc
Q 003011 485 PKDIGCLSSLRTLDLRGNNFVSLPA-SIKQFTQMEELILSNC 525 (857)
Q Consensus 485 p~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c 525 (857)
|.. .+.+| .+++++|++..+.. .+.++++|.+|.|++|
T Consensus 460 p~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 460 PDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 987 77888 99999999887653 4788999999999875
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=2.2e-15 Score=164.93 Aligned_cols=139 Identities=23% Similarity=0.311 Sum_probs=72.8
Q ss_pred cccCCCcceEEEccCccccc----cccccccCCCCCCEeeccCCCCCC----ccccccCCCCCCCEEeccCCccccCCC-
Q 003011 369 SVECLTELAELYMRQCTRLK----SISSRICKLKSLHLLSLDDCCRLE----RFPEITETMECLEYFSLASTTIQEQPS- 439 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~lp~- 439 (857)
.+..+++|++|++++|...+ .++..+..+++|+.|++++|.+.. .+...+..+++|++|++++|.++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 34455566666666665442 223334445566666666665542 223344556666666666665542100
Q ss_pred CcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeCCCCccee-----ccc
Q 003011 440 SNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPKDIGCLSSLRTLDLRGNNFVS-----LPA 509 (857)
Q Consensus 440 ~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~ 509 (857)
.+.. .+ ....+.|++|++++|.+++ +...+..+++|+.|++++|.+.. +..
T Consensus 240 ~l~~-~~------------------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 240 ALAS-AL------------------LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred HHHH-HH------------------hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 0000 00 0123567777777776652 33444555677777777777652 222
Q ss_pred cccCC-CCCcEEeccccc
Q 003011 510 SIKQF-TQMEELILSNCN 526 (857)
Q Consensus 510 ~l~~l-~~L~~L~L~~c~ 526 (857)
.+... +.|+.|++.+++
T Consensus 301 ~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 301 SLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHhhcCCchhhcccCCCC
Confidence 33444 566777666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=9.5e-16 Score=141.58 Aligned_cols=166 Identities=28% Similarity=0.441 Sum_probs=122.2
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
+++.|.|++|.++.+|+.+..+.+|+.|++.+|+ .+.+|..++.++.|+.|+++-| .+..+|..|+.++.|+.|+++.
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccc
Confidence 4556666667777777777777777777777663 4556666777777777777654 3456677777778888888877
Q ss_pred Cccc--cCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccc
Q 003011 432 TTIQ--EQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 432 n~i~--~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 509 (857)
|.+. .+|..++ .+..|+.|+|++|.+.-+|..++.+++|+.|.+.+|.+-++|.
T Consensus 112 nnl~e~~lpgnff------------------------~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 112 NNLNENSLPGNFF------------------------YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred cccccccCCcchh------------------------HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 7765 3454443 3677788888888888888889999999999999999889999
Q ss_pred cccCCCCCcEEecccccccccCCCCCCCcceeeccccc
Q 003011 510 SIKQFTQMEELILSNCNLLQSLPELPPSLILLEARNCK 547 (857)
Q Consensus 510 ~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C~ 547 (857)
.++.+++|++|.+++|+... +||-|-.|++-+..
T Consensus 168 eig~lt~lrelhiqgnrl~v----lppel~~l~l~~~k 201 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTV----LPPELANLDLVGNK 201 (264)
T ss_pred HHHHHHHHHHHhcccceeee----cChhhhhhhhhhhH
Confidence 99999999999999987543 44445555554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.2e-15 Score=140.84 Aligned_cols=168 Identities=26% Similarity=0.372 Sum_probs=119.0
Q ss_pred CcccCCCCCCCCCcEEEcCCCCCCCcccccc---cCcceEEecCccceecCccccCCCcceEEEccCccccccccccccC
Q 003011 320 LRRFPSNIHFRSPITLDFSDCLNLTEFPQFS---GNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICK 396 (857)
Q Consensus 320 l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~---~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~ 396 (857)
...+|..+.+..++.|.++.|. +..+|... .+|+.|++.+|.++++|.++..+++|+.|++.-| .+..+|..|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCC
Confidence 3455555667777777777764 44444333 2667777777778778777777777777777755 45567777777
Q ss_pred CCCCCEeeccCCCCCC-ccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEE
Q 003011 397 LKSLHLLSLDDCCRLE-RFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLN 475 (857)
Q Consensus 397 l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~ 475 (857)
++.|+.|+|++|...+ .+|..|-.|+.|+.|++++|.+.-+|..++ ++++|+.|.
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg------------------------~lt~lqil~ 156 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVG------------------------KLTNLQILS 156 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhh------------------------hhcceeEEe
Confidence 7888888877776654 567777777777777777777776666543 467777777
Q ss_pred eeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccC
Q 003011 476 LSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQ 513 (857)
Q Consensus 476 Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 513 (857)
+..|.+.++|..++.+..|++|.+.+|.++.+|..+++
T Consensus 157 lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 157 LRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred eccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 77777777777777777788888888777777765544
No 23
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.40 E-value=1.3e-13 Score=148.53 Aligned_cols=90 Identities=32% Similarity=0.557 Sum_probs=79.7
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCC-CHHHHHHHHHHHhhcC------ChhHHHHHHHhHhccCHHHHHHhhhhhcCC
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGR-RKVDWENALHNLKRIS------DRDVYEVLKISYDELNWEEKNIFLDIACFF 74 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k-~~~~W~~~l~~L~~~~------~~~i~~~Lk~SYd~L~~~~K~cFl~~a~Fp 74 (857)
+++++|+++|+|+||||+++|++|+.+ +..+|+.+++++.... ...+..++.+||+.||++.|+||+|||+||
T Consensus 183 ~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~ 262 (287)
T PF00931_consen 183 DLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFP 262 (287)
T ss_dssp THHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCC
Confidence 578999999999999999999999755 7789999999876532 467999999999999999999999999999
Q ss_pred CCC--CHHHHHHHhcCCCc
Q 003011 75 KGE--DKDYVTRIQDDPDF 91 (857)
Q Consensus 75 ~~~--~~~~l~~~~~~~g~ 91 (857)
.++ +++.++++|.++||
T Consensus 263 ~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 263 EGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp TTS-EEHHHHHHHHTT-HH
T ss_pred CCceECHHHHHHHHHHCCC
Confidence 998 59999999999987
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=1.7e-14 Score=157.78 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=63.5
Q ss_pred ccCCCcceEEEccCccccc----cccccccCCCCCCEeeccCCCCCCcccccc-----CCCCCCCEEeccCCccccCCCC
Q 003011 370 VECLTELAELYMRQCTRLK----SISSRICKLKSLHLLSLDDCCRLERFPEIT-----ETMECLEYFSLASTTIQEQPSS 440 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l-----~~l~~L~~L~L~~n~i~~lp~~ 440 (857)
+..+++|+.|++++|.... .++..+..+++|+.|++++|.....-...+ ...+.|+.|++++|.++.....
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~ 268 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH
Confidence 3444566666666665432 233345556677777777766553211111 1236777777777766411000
Q ss_pred cccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCCcCCCC-CCCCeeeCCCCcc
Q 003011 441 NEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPKDIGCL-SSLRTLDLRGNNF 504 (857)
Q Consensus 441 ~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~Ls~n~l 504 (857)
... ..+..+++|+++++++|.+.+ +...+... +.|++|++.+|.+
T Consensus 269 ~l~-------------------~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 269 DLA-------------------EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHH-------------------HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 000 002345778888888888775 23334444 6788888887753
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-11 Score=146.82 Aligned_cols=244 Identities=19% Similarity=0.226 Sum_probs=144.2
Q ss_pred cEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCC
Q 003011 159 SIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPE 237 (857)
Q Consensus 159 ~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~ 237 (857)
.++.+.+-.+......++.+.|..|+.||+|++++|. ....+|+.+..+ -+||||+++++.++.+|..+ ++.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~L-i~LryL~L~~t~I~~LP~~l~~Lk 618 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGEL-VHLRYLDLSDTGISHLPSGLGNLK 618 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC------ccCcCChHHhhh-hhhhcccccCCCccccchHHHHHH
Confidence 4556655444322456778889999999999999987 678899999999 59999999999999999999 999
Q ss_pred CccEEEcCCCCCc-ccccCcCCCCCccEEEccCCCCCcc---CCCCCCCCccceeeccCCccCCccCCcccCCCCCc---
Q 003011 238 NLIELNLPYSKVE-QMWEGKKESFKLKWIDLHHCQYLIR---FPDPLETPNLERICLSDCIDLPCIPSSIENFNNLS--- 310 (857)
Q Consensus 238 ~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~---lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~--- 310 (857)
.|.+||+..+.-. .+|.....+.+||+|.+........ +.++.++.+|+.+....... .+-..+..++.|.
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLL 696 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHh
Confidence 9999999988654 4445556699999999987752221 12344555555555543222 1112233333333
Q ss_pred -EEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCcccccc
Q 003011 311 -ILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKS 389 (857)
Q Consensus 311 -~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 389 (857)
.+.+.+|...+..+....+.+|+.|.+.+|...+...........+. .++++..+.+.+|.....
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--------------~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--------------CFPNLSKVSILNCHMLRD 762 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhh--------------hHHHHHHHHhhccccccc
Confidence 22222222222222222566666666666644322111111100000 133344444444433322
Q ss_pred ccccccCCCCCCEeeccCCCCCCccccccCCCCCCCE
Q 003011 390 ISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEY 426 (857)
Q Consensus 390 lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~ 426 (857)
+. +....++|+.|.+.+|...+.+......+..++.
T Consensus 763 l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 763 LT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred cc-hhhccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 21 2234567777777777766666555444444443
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=2.1e-10 Score=115.44 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=51.5
Q ss_pred cCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 351 GNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 351 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
..|++++|++|.|+.+..++.-.|.++.|++++|.+...-. +..+++|+.|+|++|.+... ...-..+.+++.|.|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhh-hhhHhhhcCEeeeehh
Confidence 35777888888888888877777888888888876654322 55666666666666644322 1222334455555555
Q ss_pred CCcccc
Q 003011 431 STTIQE 436 (857)
Q Consensus 431 ~n~i~~ 436 (857)
+|.|..
T Consensus 361 ~N~iE~ 366 (490)
T KOG1259|consen 361 QNKIET 366 (490)
T ss_pred hhhHhh
Confidence 555543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=6.8e-11 Score=128.71 Aligned_cols=167 Identities=26% Similarity=0.439 Sum_probs=114.1
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
.|+.+.|..|.+..+|..+.++..|+.|+|+.|. +..+|..++.|+ |+.|-+++| .+..+|+.++.+..|..|+.+.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhh
Confidence 4555566666666666666666666666666653 334454455554 555555544 3344455555555666666666
Q ss_pred CccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccc
Q 003011 432 TTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASI 511 (857)
Q Consensus 432 n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 511 (857)
|.+..+|+. ++++.+|+.|++..|++..+|+.+..| .|..||++.|++..||..+
T Consensus 176 nei~slpsq------------------------l~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 176 NEIQSLPSQ------------------------LGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF 230 (722)
T ss_pred hhhhhchHH------------------------hhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh
Confidence 655555543 567889999999999999999888855 4889999999999999999
Q ss_pred cCCCCCcEEecccccccccCCC------CCCCcceeeccccc
Q 003011 512 KQFTQMEELILSNCNLLQSLPE------LPPSLILLEARNCK 547 (857)
Q Consensus 512 ~~l~~L~~L~L~~c~~l~~lp~------l~~sL~~L~i~~C~ 547 (857)
.++..|++|.|.+|+. ++-|. .-.-.++|++.-|.
T Consensus 231 r~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhcc
Confidence 9999999999999884 44442 22345777777773
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=1.1e-10 Score=127.28 Aligned_cols=216 Identities=21% Similarity=0.286 Sum_probs=126.7
Q ss_pred CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEec
Q 003011 235 SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCL 314 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L 314 (857)
.+..-+..||+.|++..+|..+..+..|..+.|.+|. ...+|..+.++..|.+|+|
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~------------------------~r~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC------------------------IRTIPEAICNLEALTFLDL 128 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhcc------------------------ceecchhhhhhhHHHHhhh
Confidence 4444555566666666666555555555555555443 2334555666666666666
Q ss_pred cCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccc
Q 003011 315 QGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRI 394 (857)
Q Consensus 315 ~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 394 (857)
+. +.+..+|..+..--|+ .|-+++|+++.+|..++.+..|..|+.+.|.+ ..+|..+
T Consensus 129 s~-NqlS~lp~~lC~lpLk---------------------vli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql 185 (722)
T KOG0532|consen 129 SS-NQLSHLPDGLCDLPLK---------------------VLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQL 185 (722)
T ss_pred cc-chhhcCChhhhcCcce---------------------eEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHh
Confidence 55 3455555544333333 34444456666666666666676676666633 2333334
Q ss_pred cCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEE
Q 003011 395 CKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGL 474 (857)
Q Consensus 395 ~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L 474 (857)
+.+.+|+.| .+..|.+..+|..... -.|..|
T Consensus 186 ~~l~slr~l------------------------~vrRn~l~~lp~El~~-------------------------LpLi~l 216 (722)
T KOG0532|consen 186 GYLTSLRDL------------------------NVRRNHLEDLPEELCS-------------------------LPLIRL 216 (722)
T ss_pred hhHHHHHHH------------------------HHhhhhhhhCCHHHhC-------------------------Cceeee
Confidence 444444444 4444444444443321 247788
Q ss_pred EeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccc---cCCCCCcEEecccccccccCCCCCCCcceeeccccc
Q 003011 475 NLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASI---KQFTQMEELILSNCNLLQSLPELPPSLILLEARNCK 547 (857)
Q Consensus 475 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l---~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C~ 547 (857)
|+++|++..+|..|..+..|++|-|.+|.+++=|..+ +...-.++|++.-|+ .+.-+.++..++-.....|.
T Consensus 217 DfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~~~c~ 291 (722)
T KOG0532|consen 217 DFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHFSSCH 291 (722)
T ss_pred ecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCcccCCcc
Confidence 8888888888888888999999999999988887765 334456888888885 33334444444433344443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=3.5e-09 Score=119.56 Aligned_cols=175 Identities=29% Similarity=0.419 Sum_probs=133.5
Q ss_pred CcceEEecCccceecCccccCCC-cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLT-ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
.++.|++.++.+.++|.....+. +|+.|++++|... .+|..+..+++|+.|++++|++... |...+.+++|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL-PKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh-hhhhhhhhhhhheecc
Confidence 56777777788888887777774 8888888887543 3444577888888888888766543 3344477888888888
Q ss_pred CCccccCCCCcccccCcCCcceeecccc-CCcCCC-CCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceecc
Q 003011 431 STTIQEQPSSNEDRILPSSIANWSYGCR-GLILPP-LPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 431 ~n~i~~lp~~~~~~~lp~~L~~L~l~~~-~~~~~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 508 (857)
+|.++.+|.... .+..|+.+.++.+ ....+. +..+.++..|.+.+|.+..++..++.+++|+.|++++|.++.++
T Consensus 195 ~N~i~~l~~~~~---~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 195 GNKISDLPPEIE---LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred CCccccCchhhh---hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence 888888887643 2355777777666 344333 77888888888888888888888888999999999999999888
Q ss_pred ccccCCCCCcEEecccccccccCC
Q 003011 509 ASIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 509 ~~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
. +..+.+|+.|+++++.....+|
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred c-ccccCccCEEeccCccccccch
Confidence 6 8888999999999988776665
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.77 E-value=1.3e-08 Score=115.01 Aligned_cols=190 Identities=22% Similarity=0.238 Sum_probs=89.3
Q ss_pred EEEEeCCCC-CCCCCCCCCCCccEEEcCCCCCcccccCcCCCC-CccEEEccCCCCCccCC-CCCCCCccceeeccCCcc
Q 003011 219 YLHWHGYPL-KTLPSNFSPENLIELNLPYSKVEQMWEGKKESF-KLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCID 295 (857)
Q Consensus 219 ~L~l~~~~l-~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~ 295 (857)
.|....+.+ ..+.....+..+..|++.+|.++.++.....+. +|+.|++++|.+ ..+| .+..+++|+.|++++|..
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchh
Confidence 355555555 222222255566666666666666666555553 666666666652 3332 455555555555555432
Q ss_pred CCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCC
Q 003011 296 LPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLT 374 (857)
Q Consensus 296 ~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~ 374 (857)
..+|...+.+++|+.|++++ +.+..+|..+ ... .|++|.+++|.+..++..+..+.
T Consensus 176 -~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~---------------------~L~~l~~~~N~~~~~~~~~~~~~ 232 (394)
T COG4886 176 -SDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLS---------------------ALEELDLSNNSIIELLSSLSNLK 232 (394)
T ss_pred -hhhhhhhhhhhhhhheeccC-CccccCchhhhhhh---------------------hhhhhhhcCCcceecchhhhhcc
Confidence 23333333444555555544 3333444332 122 23344444444444444455555
Q ss_pred cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccc
Q 003011 375 ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 375 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
++..|.+.+|+... ++..++.+++|+.|++++|.+....+ ++.+.+|+.|+++++.+.
T Consensus 233 ~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 233 NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 55555544443222 13334444445555554443333222 444444444444444444
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2e-09 Score=114.27 Aligned_cols=205 Identities=18% Similarity=0.178 Sum_probs=112.0
Q ss_pred CCCCccceeeccCCccCCccC--CcccCCCCCcEEeccCCCCCcccCCCC----CCCCCcEEEcCCCCCCCcccccccCc
Q 003011 280 LETPNLERICLSDCIDLPCIP--SSIENFNNLSILCLQGCESLRRFPSNI----HFRSPITLDFSDCLNLTEFPQFSGNI 353 (857)
Q Consensus 280 ~~l~~L~~L~L~~~~~~~~~p--~~i~~l~~L~~L~L~~c~~l~~lp~~~----~l~~L~~L~Ls~~~~l~~~p~~~~~L 353 (857)
+++.+|+...|.++... ..+ .....+++++.|||++| .+..+-... .+++|+.|+++.|
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N------------- 182 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN------------- 182 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-------------
Confidence 34566777777664322 222 23445666666666663 222111100 4555555555544
Q ss_pred ceEEecCccceecCcc--ccCCCcceEEEccCccccc-cccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 354 KQLYLCGTAIEEVPSS--VECLTELAELYMRQCTRLK-SISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~--l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
.+...-++ -..++.|+.|.++.|.... .+-..+..+|+|+.|+|.+|...........-+..|+.|+|+
T Consensus 183 --------rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs 254 (505)
T KOG3207|consen 183 --------RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLS 254 (505)
T ss_pred --------cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcccc
Confidence 22221111 1245566666666665542 222234456666666666665333333333445566666666
Q ss_pred CCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc--CCCc-----CCCCCCCCeeeCCCCc
Q 003011 431 STTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE--IPKD-----IGCLSSLRTLDLRGNN 503 (857)
Q Consensus 431 ~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~ 503 (857)
+|.+...+... ..+.++.|..|+++.|.+.+ +|+. ...+++|+.|++..|+
T Consensus 255 ~N~li~~~~~~----------------------~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 255 NNNLIDFDQGY----------------------KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred CCccccccccc----------------------ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 66665544321 14567788888888888777 4443 3567888888888888
Q ss_pred ceecc--ccccCCCCCcEEecccccccc
Q 003011 504 FVSLP--ASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 504 l~~lp--~~l~~l~~L~~L~L~~c~~l~ 529 (857)
+..++ ..+..+++|+.|.+..|....
T Consensus 313 I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 313 IRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccccccchhhccchhhhhhcccccccc
Confidence 76655 235556777777776666543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=5.5e-09 Score=105.41 Aligned_cols=61 Identities=25% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccc
Q 003011 466 PGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 466 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~ 527 (857)
..+++|+.|+|++|.++++..|-..+-+.+.|.|++|.++++. ++..+.+|..||+++|++
T Consensus 326 a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 326 AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccch
Confidence 3455666666666666655555455556666666666655554 555566666666666553
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.8e-09 Score=113.12 Aligned_cols=149 Identities=14% Similarity=0.099 Sum_probs=74.4
Q ss_pred CCeeEEEEeCCCCCCCCC--CC-CCCCccEEEcCCCCCccc---ccCcCCCCCccEEEccCCCCCccCCC--CCCCCccc
Q 003011 215 DELRYLHWHGYPLKTLPS--NF-SPENLIELNLPYSKVEQM---WEGKKESFKLKWIDLHHCQYLIRFPD--PLETPNLE 286 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~--~~-~l~~L~~L~Ls~n~l~~l---~~~~~~l~~L~~L~Ls~~~~l~~lp~--l~~l~~L~ 286 (857)
++||...+.++++...+. .. .+++++.|||+.|-+... -+-...|++|+.|+|+.|++..-... -..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 457777777777666653 22 667777777777655432 23345666667777766664322211 11234444
Q ss_pred eeeccCCccCCc-cCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcc--c-ccccCcceEEecCcc
Q 003011 287 RICLSDCIDLPC-IPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEF--P-QFSGNIKQLYLCGTA 362 (857)
Q Consensus 287 ~L~L~~~~~~~~-~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~--p-~~~~~L~~L~L~~~~ 362 (857)
.|.|+.|..... +-.-.. .+++|+.|++.+|..+... + ..+..|+.|+|++|.
T Consensus 201 ~L~l~~CGls~k~V~~~~~-----------------------~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILL-----------------------TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred eEEeccCCCCHHHHHHHHH-----------------------hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 444444433211 111112 3455555555555321111 1 123355566666666
Q ss_pred ceecC--ccccCCCcceEEEccCccc
Q 003011 363 IEEVP--SSVECLTELAELYMRQCTR 386 (857)
Q Consensus 363 l~~lp--~~l~~l~~L~~L~L~~~~~ 386 (857)
+...+ ...+.++.|..|+++.|.+
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred ccccccccccccccchhhhhccccCc
Confidence 65555 3355666666666666544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=9.4e-09 Score=100.14 Aligned_cols=126 Identities=18% Similarity=0.114 Sum_probs=40.6
Q ss_pred cCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCc-CCC
Q 003011 181 ACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGK-KES 259 (857)
Q Consensus 181 ~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l 259 (857)
.+..++|.|++.+|.++. .+.+.....+|+.|++++|.++.++..-.+++|++|++++|.|+.+.+++ ..+
T Consensus 16 ~n~~~~~~L~L~~n~I~~--------Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST--------IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccccc--------ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC
Confidence 344467777777776321 12333211567778888887777765447777888888888777775544 357
Q ss_pred CCccEEEccCCCCCc--cCCCCCCCCccceeeccCCccCCcc---CCcccCCCCCcEEec
Q 003011 260 FKLKWIDLHHCQYLI--RFPDPLETPNLERICLSDCIDLPCI---PSSIENFNNLSILCL 314 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~--~lp~l~~l~~L~~L~L~~~~~~~~~---p~~i~~l~~L~~L~L 314 (857)
++|+.|+|++|++.. .+-.+..+++|++|+|.+|+....- ...+..+++|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 777788877776422 1223455677777777776554321 112445566666654
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=1.5e-07 Score=102.54 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=29.0
Q ss_pred CCCCcceeecccccCCCcccCcchhhhhhhhhhh--hhhccccccccCCceEEEecccccccHhh
Q 003011 534 LPPSLILLEARNCKQLQSLPELSSYLEELDASKL--ETLSEYSDVFAQPRITFTFTNCLKLNRKS 596 (857)
Q Consensus 534 l~~sL~~L~i~~C~~L~~l~~~~~~l~~L~~~~l--~~L~~~~~~~~~~~~~l~~~nC~~L~~~~ 596 (857)
+|++|+.|.+.+|..+...+..|..++.|.+... ..++.....++... .+.|.+|.++++.+
T Consensus 154 LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 154 ISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred cCCcccEEEecCCCcccCcccccccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence 4445555555555443322223334444443221 11111222244444 78899998887643
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=5.9e-08 Score=94.58 Aligned_cols=79 Identities=28% Similarity=0.336 Sum_probs=14.6
Q ss_pred CCCCccEEEcCCCCCcccccCcC-CCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcc-cCCCCCcEE
Q 003011 235 SPENLIELNLPYSKVEQMWEGKK-ESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSI-ENFNNLSIL 312 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i-~~l~~L~~L 312 (857)
++.++++|+|++|.|+.+ +.+. .+.+|+.|+|++|. +..++.+..+++|++|++++|.+.. +.+.+ ..+++|+.|
T Consensus 17 n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 344444444444444444 2232 34444455554444 2334444444555555555443332 22222 234555555
Q ss_pred eccC
Q 003011 313 CLQG 316 (857)
Q Consensus 313 ~L~~ 316 (857)
++++
T Consensus 94 ~L~~ 97 (175)
T PF14580_consen 94 YLSN 97 (175)
T ss_dssp E-TT
T ss_pred ECcC
Confidence 5544
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.51 E-value=4.4e-09 Score=108.91 Aligned_cols=62 Identities=26% Similarity=0.325 Sum_probs=44.9
Q ss_pred CCCCCCcEEEeeCCCCcc-----CCCc-CCCCCCCCeeeCCCCcce-----eccccccCCCCCcEEecccccc
Q 003011 466 PGLSSLTGLNLSFRNITE-----IPKD-IGCLSSLRTLDLRGNNFV-----SLPASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 466 ~~l~~L~~L~Ls~n~l~~-----lp~~-l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~c~~ 527 (857)
+.+++|+.|++++|.+.. +-.. -...|+|+.|.+.+|.++ .+...+...+.|+.|+|++|..
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 456778888888887775 2222 234788999999999876 3444566688999999999985
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=1.3e-08 Score=105.49 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=93.4
Q ss_pred ccCCCCCCEeeccCCCCCC----ccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCC
Q 003011 394 ICKLKSLHLLSLDDCCRLE----RFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLS 469 (857)
Q Consensus 394 l~~l~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~ 469 (857)
+..-+.|+++....|..-. .+...+...+.|+.+.+..|.|..-..... ...+..++
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al-------------------~eal~~~~ 213 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTAL-------------------AEALEHCP 213 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHH-------------------HHHHHhCC
Confidence 3445677777777765442 234566777888888888887752111000 00145789
Q ss_pred CCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeCCCCccee-----ccccc-cCCCCCcEEecccccccccCC------
Q 003011 470 SLTGLNLSFRNITE-----IPKDIGCLSSLRTLDLRGNNFVS-----LPASI-KQFTQMEELILSNCNLLQSLP------ 532 (857)
Q Consensus 470 ~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~c~~l~~lp------ 532 (857)
+|+.|+|.+|.++. +...+..+++|+.|++++|.++. +-..+ ...|+|+.|.+.+|.+...--
T Consensus 214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~ 293 (382)
T KOG1909|consen 214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC 293 (382)
T ss_pred cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH
Confidence 99999999998875 56677888999999999999872 22222 457999999999998754321
Q ss_pred -CCCCCcceeeccccc
Q 003011 533 -ELPPSLILLEARNCK 547 (857)
Q Consensus 533 -~l~~sL~~L~i~~C~ 547 (857)
.--|.|..|++++|.
T Consensus 294 ~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 294 MAEKPDLEKLNLNGNR 309 (382)
T ss_pred HhcchhhHHhcCCccc
Confidence 114778999999885
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=3.4e-08 Score=111.84 Aligned_cols=240 Identities=22% Similarity=0.221 Sum_probs=154.2
Q ss_pred CCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCC
Q 003011 182 CMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESF 260 (857)
Q Consensus 182 ~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~ 260 (857)
.+..++.+.+..|.+.. +-..+..+ .+|..|++.+|.++.+.... .+.+|++|+|++|.|+.+ .++..+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-------~~~~l~~~-~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-------ILNHLSKL-KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhh-------hhcccccc-cceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhcc
Confidence 44555555566665211 22234444 68889999999988887744 789999999999999888 4677788
Q ss_pred CccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccC-CcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCC
Q 003011 261 KLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIP-SSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSD 339 (857)
Q Consensus 261 ~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 339 (857)
.|+.|++++|. +..++.+..+++|+.+++++|.+...-+ . ...+.+|+.+.+.+| .+..+...-.+..+..+++..
T Consensus 141 ~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n-~i~~i~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 141 LLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN-SIREIEGLDLLKKLVLLSLLD 217 (414)
T ss_pred chhhheeccCc-chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC-chhcccchHHHHHHHHhhccc
Confidence 89999999988 5667777778899999999877655443 2 577888888888774 333333222333444445554
Q ss_pred CCCCC--ccccccc-CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCc---
Q 003011 340 CLNLT--EFPQFSG-NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLER--- 413 (857)
Q Consensus 340 ~~~l~--~~p~~~~-~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~--- 413 (857)
+.... .++.... .|+.+++.+|.+..++..+..+..+..|++.++.....- .+...+.+..+....+.....
T Consensus 218 n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 218 NKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred ccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhh
Confidence 43221 1111111 278888999988888777888888888888877554321 133445555556665554421
Q ss_pred ccc-ccCCCCCCCEEeccCCccc
Q 003011 414 FPE-ITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 414 ~~~-~l~~l~~L~~L~L~~n~i~ 435 (857)
... .....+.++...+..+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred hccccccccccccccccccCccc
Confidence 111 1455566666666666554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=6e-08 Score=109.86 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=53.2
Q ss_pred CeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCc
Q 003011 216 ELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCI 294 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~ 294 (857)
.+..+.+..|.+..+-... .+++|..|++..|+|+.+...+..+++|++|+|++|. +..+..+..++.|+.|++++|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCc
Confidence 4555555555555532222 5566666666666666664445666666666666665 3445555555556666666654
Q ss_pred cCCccCCcccCCCCCcEEeccC
Q 003011 295 DLPCIPSSIENFNNLSILCLQG 316 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~ 316 (857)
+... ..+..+++|+.+++++
T Consensus 152 i~~~--~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 152 ISDI--SGLESLKSLKLLDLSY 171 (414)
T ss_pred chhc--cCCccchhhhcccCCc
Confidence 3221 2233345555555544
No 41
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=2e-06 Score=93.83 Aligned_cols=153 Identities=21% Similarity=0.365 Sum_probs=76.8
Q ss_pred cceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 353 IKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 353 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
++.|+++++.++.+|. -.++|++|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++.++
T Consensus 54 l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n 122 (426)
T PRK15386 54 SGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGS 122 (426)
T ss_pred CCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCC
Confidence 3344444444444441 12346666666666666666544 24677777777755555543 3566666655
Q ss_pred ccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCC-C--ccCCCcCCCCCCCCeeeCCCCcceeccc
Q 003011 433 TIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRN-I--TEIPKDIGCLSSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 433 ~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l--~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 509 (857)
....++. +|++|+.|.+ .+++ . ..+|. .-.++|+.|++++|....+|.
T Consensus 123 ~~~~L~~------LPssLk~L~I---------------------~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~ 173 (426)
T PRK15386 123 ATDSIKN------VPNGLTSLSI---------------------NSYNPENQARIDN--LISPSLKTLSLTGCSNIILPE 173 (426)
T ss_pred CCccccc------CcchHhheec---------------------ccccccccccccc--ccCCcccEEEecCCCcccCcc
Confidence 4443332 4444444443 2211 0 00111 012456666666666444444
Q ss_pred cccCCCCCcEEeccccccc-ccC--CCCCCCcceeecccccC
Q 003011 510 SIKQFTQMEELILSNCNLL-QSL--PELPPSLILLEARNCKQ 548 (857)
Q Consensus 510 ~l~~l~~L~~L~L~~c~~l-~~l--p~l~~sL~~L~i~~C~~ 548 (857)
.+. .+|+.|+++.|... ..+ +.+|+++ .|.+.+|-.
T Consensus 174 ~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lk 212 (426)
T PRK15386 174 KLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVL 212 (426)
T ss_pred ccc--ccCcEEEecccccccccCccccccccc-Eechhhhcc
Confidence 333 46777777654311 112 2466677 777777744
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.35 E-value=6.9e-07 Score=105.97 Aligned_cols=89 Identities=22% Similarity=0.181 Sum_probs=46.3
Q ss_pred ccEEEcCCCCCc-ccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccC
Q 003011 239 LIELNLPYSKVE-QMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQG 316 (857)
Q Consensus 239 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~ 316 (857)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+...+| .+..+++|+.|+|++|...+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555554 344455555555555555555444454 355555555555555555555555555555555555555
Q ss_pred CCCCcccCCCC
Q 003011 317 CESLRRFPSNI 327 (857)
Q Consensus 317 c~~l~~lp~~~ 327 (857)
|.....+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 44444444433
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=8.4e-07 Score=105.26 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=95.0
Q ss_pred CeeEEEEeCCCCC-CCCCCC-CCCCccEEEcCCCCCc-ccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeecc
Q 003011 216 ELRYLHWHGYPLK-TLPSNF-SPENLIELNLPYSKVE-QMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLS 291 (857)
Q Consensus 216 ~Lr~L~l~~~~l~-~lp~~~-~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~ 291 (857)
.++.|+|++|.+. .+|..+ .+.+|+.|+|++|.+. .+|..+..+++|+.|+|++|++...+| .++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3888999999986 668888 8999999999999998 788899999999999999999888898 69999999999999
Q ss_pred CCccCCccCCcccCC-CCCcEEeccCCCCCcccC
Q 003011 292 DCIDLPCIPSSIENF-NNLSILCLQGCESLRRFP 324 (857)
Q Consensus 292 ~~~~~~~~p~~i~~l-~~L~~L~L~~c~~l~~lp 324 (857)
+|...+.+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999988764 567788888876554433
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=6.8e-07 Score=71.41 Aligned_cols=59 Identities=41% Similarity=0.606 Sum_probs=53.3
Q ss_pred CCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcceeccc-cccCCCCCcEEecccccc
Q 003011 469 SSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFVSLPA-SIKQFTQMEELILSNCNL 527 (857)
Q Consensus 469 ~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~ 527 (857)
|+|++|++++|++..+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|+.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 57999999999999987 578999999999999999998875 679999999999999973
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=6.1e-08 Score=98.15 Aligned_cols=179 Identities=18% Similarity=0.150 Sum_probs=113.1
Q ss_pred CCccEEEcCCCCCc--ccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCC--cccCCCCCcE
Q 003011 237 ENLIELNLPYSKVE--QMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPS--SIENFNNLSI 311 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~--~i~~l~~L~~ 311 (857)
..|++|||+.+.|+ ++-.-++.+.+|+.|.|.++++-..+- .+.+-.+|+.|+|+.|+....... -+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45899999998887 444445778888888888887554443 567778888888888766554322 2456677777
Q ss_pred EeccCCCCCcccCCCC---CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccc
Q 003011 312 LCLQGCESLRRFPSNI---HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLK 388 (857)
Q Consensus 312 L~L~~c~~l~~lp~~~---~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 388 (857)
|+|+.|...+..-..+ --+.|..|+++|+..-- ....+..-...+++|.+|+|++|..+.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccC
Confidence 7777765444221111 22344555555542110 011121224568899999999887664
Q ss_pred c-ccccccCCCCCCEeeccCCCCCC-ccccccCCCCCCCEEeccCC
Q 003011 389 S-ISSRICKLKSLHLLSLDDCCRLE-RFPEITETMECLEYFSLAST 432 (857)
Q Consensus 389 ~-lp~~l~~l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~L~~n 432 (857)
. .-..|.+++.|++|.++.|.... ..--.+..+++|.+|++.++
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 3 33457788999999999986542 11124677888888888764
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=5.4e-06 Score=66.15 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=31.6
Q ss_pred CcceEEecCccceecCc-cccCCCcceEEEccCccccccccccccCCCCCCEeeccCC
Q 003011 352 NIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDC 408 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~ 408 (857)
+|++|++++|.+..+|. .+..+++|++|++++|.....-|..|..+++|+.|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666666666654 3455566666666555554444444555555555555554
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=1.4e-07 Score=95.52 Aligned_cols=175 Identities=21% Similarity=0.240 Sum_probs=123.3
Q ss_pred CcceEEecCcccee--cCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcc--ccccCCCCCCCEE
Q 003011 352 NIKQLYLCGTAIEE--VPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERF--PEITETMECLEYF 427 (857)
Q Consensus 352 ~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~--~~~l~~l~~L~~L 427 (857)
.++.|+|+...|+. +..-+..+++|+.|.+.++.....+-..+..-.+|+.|+|+.|+-.... .-.+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57788888777763 4344667889999999998888877777888899999999998776543 3456788999999
Q ss_pred eccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCC--Cc--cCCCcCCCCCCCCeeeCCCCc
Q 003011 428 SLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRN--IT--EIPKDIGCLSSLRTLDLRGNN 503 (857)
Q Consensus 428 ~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~Ls~n~ 503 (857)
+++.+.+..-.-...-. .--+.|+.|+|+++. +. .+..-...+|+|..|||++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~---------------------hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVA---------------------HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHh---------------------hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 99988664211110000 012567777887763 11 133334568899999999987
Q ss_pred -ce-eccccccCCCCCcEEecccccccccCCC------CCCCcceeecccccCC
Q 003011 504 -FV-SLPASIKQFTQMEELILSNCNLLQSLPE------LPPSLILLEARNCKQL 549 (857)
Q Consensus 504 -l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~------l~~sL~~L~i~~C~~L 549 (857)
++ ..-..+.+++.|++|.++.|-.+ +|+ -.|+|.+|++.+|-+=
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 65 45556788999999999999754 342 2378999999999543
No 48
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=2.7e-07 Score=97.89 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=39.5
Q ss_pred CCCCCcEEEeeCCCCcc---CCCcCCCCCCCCeeeCCCCc-ceec-----cccccCCCCCcEEecccccccc
Q 003011 467 GLSSLTGLNLSFRNITE---IPKDIGCLSSLRTLDLRGNN-FVSL-----PASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~Ls~n~-l~~l-----p~~l~~l~~L~~L~L~~c~~l~ 529 (857)
+.+.|+.+++..|.... +..--.+++.|+.|.|+.|. ++.. ...-..+..|+.|.|++|+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 45677777777765443 33333567778888888776 3322 2333556678888888887654
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=1.6e-06 Score=88.02 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=57.9
Q ss_pred eeEEEEeCCCCCCCCCC--C--CCCCccEEEcCCCCCcc---cccCcCCCCCccEEEccCCCCCccCCCC-CCCCcccee
Q 003011 217 LRYLHWHGYPLKTLPSN--F--SPENLIELNLPYSKVEQ---MWEGKKESFKLKWIDLHHCQYLIRFPDP-LETPNLERI 288 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~--~--~l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~~~~l~~lp~l-~~l~~L~~L 288 (857)
+..|.+.++.+...-.. | ..+++++|||.+|.|.. +..-+.+++.|++|+|+.|++...+..+ ....+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33455555555444222 2 56788888888888874 3334578888899999888865554443 355677777
Q ss_pred eccCCccCC-ccCCcccCCCCCcEEeccC
Q 003011 289 CLSDCIDLP-CIPSSIENFNNLSILCLQG 316 (857)
Q Consensus 289 ~L~~~~~~~-~~p~~i~~l~~L~~L~L~~ 316 (857)
.|.|....- .....+..+++++.|.++.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 776632211 1222333444444444444
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.94 E-value=8.7e-08 Score=107.47 Aligned_cols=127 Identities=22% Similarity=0.247 Sum_probs=68.6
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
.|...+.++|.+..+..++.-++.|+.|+|++|+....- .+..++.|+.|||+.|.+....--....+. |..|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 455556666666666666666666666666666554332 344555555555555543322111111222 55555555
Q ss_pred CccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC--CcCCCCCCCCeeeCCCCccee
Q 003011 432 TTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP--KDIGCLSSLRTLDLRGNNFVS 506 (857)
Q Consensus 432 n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~ 506 (857)
|.++.+-. +.++.+|+.||+++|-+.+.. .-++.+..|+.|.|.||++-.
T Consensus 242 N~l~tL~g-------------------------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTLRG-------------------------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhhhh-------------------------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 55443322 445666777777777666522 234556667777777776543
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.79 E-value=8.3e-07 Score=94.27 Aligned_cols=137 Identities=17% Similarity=0.221 Sum_probs=82.7
Q ss_pred CCCcceEEEccCccccccccc-c-ccCCCCCCEeeccCCCCCCcc--ccccCCCCCCCEEeccCCccccCCCCcccccCc
Q 003011 372 CLTELAELYMRQCTRLKSISS-R-ICKLKSLHLLSLDDCCRLERF--PEITETMECLEYFSLASTTIQEQPSSNEDRILP 447 (857)
Q Consensus 372 ~l~~L~~L~L~~~~~l~~lp~-~-l~~l~~L~~L~Ls~~~~~~~~--~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp 447 (857)
.+..|+.|..++|...+..+- . ..+..+|+.|-+++|+..... ...-.+.+.|+.+++.++........
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL------- 364 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL------- 364 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH-------
Confidence 356677777777766443221 1 234577777777777654322 11224456666666665433211100
Q ss_pred CCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc------CCCcCCCCCCCCeeeCCCCcce--eccccccCCCCCcE
Q 003011 448 SSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE------IPKDIGCLSSLRTLDLRGNNFV--SLPASIKQFTQMEE 519 (857)
Q Consensus 448 ~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~ 519 (857)
.. .-.+++.|+.|.|++|.+.. +...-..+..|..|.|++++.. ..-..+..+++|+.
T Consensus 365 ---~s-----------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler 430 (483)
T KOG4341|consen 365 ---AS-----------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER 430 (483)
T ss_pred ---hh-----------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence 00 02467889999999886443 2334456788999999999843 44456677788888
Q ss_pred Eecccccccc
Q 003011 520 LILSNCNLLQ 529 (857)
Q Consensus 520 L~L~~c~~l~ 529 (857)
+++-+|+...
T Consensus 431 i~l~~~q~vt 440 (483)
T KOG4341|consen 431 IELIDCQDVT 440 (483)
T ss_pred eeeechhhhh
Confidence 8888877543
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.6e-06 Score=78.41 Aligned_cols=107 Identities=22% Similarity=0.317 Sum_probs=83.4
Q ss_pred CCCEeeccCCCCCC--ccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEe
Q 003011 399 SLHLLSLDDCCRLE--RFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNL 476 (857)
Q Consensus 399 ~L~~L~Ls~~~~~~--~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~L 476 (857)
.+..++|+.|++.. ..+..+.....|+..+|++|.+..+|..+.. .++.++.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~-----------------------kf~t~t~lNl 84 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTI-----------------------KFPTATTLNL 84 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhh-----------------------ccchhhhhhc
Confidence 34556666665542 2334455666777888999988888876543 5678899999
Q ss_pred eCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEeccccccc
Q 003011 477 SFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 477 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 528 (857)
++|.+.++|..+..+|.|+.|+++.|.+...|.-+..|.+|-.|+..+|...
T Consensus 85 ~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 85 ANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 9999999998899999999999999999988888888888888988887644
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.3e-05 Score=57.55 Aligned_cols=39 Identities=33% Similarity=0.570 Sum_probs=21.4
Q ss_pred CCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceecc
Q 003011 470 SLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 470 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 508 (857)
+|++|++++|+++++|..++.+++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666655555555566666666655555444
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=5.7e-05 Score=55.51 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=22.7
Q ss_pred CCccEEEcCCCCCcccccCcCCCCCccEEEccCCC
Q 003011 237 ENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQ 271 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~ 271 (857)
++|++|++++|+|+.+|..+.+|++|++|++++|+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 35667777777777776666777777777777775
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=1.4e-06 Score=98.01 Aligned_cols=122 Identities=20% Similarity=0.101 Sum_probs=81.7
Q ss_pred CeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCC-CccceeeccCC
Q 003011 216 ELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLET-PNLERICLSDC 293 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l-~~L~~L~L~~~ 293 (857)
.|...+.+.|.+..+.... -++.|+.|||++|++++.- .+..|++|++|||++|. +..+|.++.- ..|+.|+|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeeccc
Confidence 4666677777777776666 5678888888888888774 77888888888888887 5667744321 23888888876
Q ss_pred ccCCccCCcccCCCCCcEEeccCCCCCc--ccCCCCCCCCCcEEEcCCCC
Q 003011 294 IDLPCIPSSIENFNNLSILCLQGCESLR--RFPSNIHFRSPITLDFSDCL 341 (857)
Q Consensus 294 ~~~~~~p~~i~~l~~L~~L~L~~c~~l~--~lp~~~~l~~L~~L~Ls~~~ 341 (857)
.... + ..+.+|++|+.||+++|-... .+.....+..|+.|.|.||+
T Consensus 243 ~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 ALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4332 2 346778888888888743222 12121245667777777765
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=4.1e-05 Score=78.05 Aligned_cols=183 Identities=17% Similarity=0.177 Sum_probs=120.9
Q ss_pred ccCcceEEecCcccee---cCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCC-ccccccCCCCCCC
Q 003011 350 SGNIKQLYLCGTAIEE---VPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLE-RFPEITETMECLE 425 (857)
Q Consensus 350 ~~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~ 425 (857)
...++.++|.+|.|+. +..-+.++|.|+.|+++.|+....+...-..+.+|+.|-|.|..+.- .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3467778888887775 33446789999999999887654332211356788999988876543 3344567788888
Q ss_pred EEeccCCccccCCCCc-ccccCcCCcceeec-cccCCcCCC----CCCCCCCcEEEeeCCCCccC--CCcCCCCCCCCee
Q 003011 426 YFSLASTTIQEQPSSN-EDRILPSSIANWSY-GCRGLILPP----LPGLSSLTGLNLSFRNITEI--PKDIGCLSSLRTL 497 (857)
Q Consensus 426 ~L~L~~n~i~~lp~~~-~~~~lp~~L~~L~l-~~~~~~~~~----l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L 497 (857)
.|+++.|.+..+-..- ....+.+.+.+|.+ .|....-.. -.-+|++..+-+..|.+.+. ......+|.+--|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 8888888665332211 11112244555544 221100000 23468888888888988773 3456678888899
Q ss_pred eCCCCcceecc--ccccCCCCCcEEecccccccccCC
Q 003011 498 DLRGNNFVSLP--ASIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 498 ~Ls~n~l~~lp--~~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
+|+.|+|.++. +.+..++.|..|.+++++....+.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 99999988665 467889999999999999877665
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.21 E-value=7.3e-05 Score=88.70 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC--CCCC-CCCCccEEEcCCCCCcccccCcCCCC
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL--PSNF-SPENLIELNLPYSKVEQMWEGKKESF 260 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~ 260 (857)
.+|+.|++++... ....-|..++.+.+.||.|.+.+-.+..- -..+ ++++|..||+|+++++.+ .+++.|+
T Consensus 122 ~nL~~LdI~G~~~-----~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-----FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLK 195 (699)
T ss_pred HhhhhcCccccch-----hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccc
Confidence 4667777766441 22223344444445777777766544221 1112 567777777777777777 6777777
Q ss_pred CccEEEccCCCCCc--cCCCCCCCCccceeeccCCc
Q 003011 261 KLKWIDLHHCQYLI--RFPDPLETPNLERICLSDCI 294 (857)
Q Consensus 261 ~L~~L~Ls~~~~l~--~lp~l~~l~~L~~L~L~~~~ 294 (857)
+|+.|.+.+-.+.. .+-++.++++|+.||+|...
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 77777776654332 12256667777777777643
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=7.9e-05 Score=88.43 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCCCcEEEcCCCCC----CCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccc-cccccccCCCCCCE
Q 003011 328 HFRSPITLDFSDCLN----LTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLK-SISSRICKLKSLHL 402 (857)
Q Consensus 328 ~l~~L~~L~Ls~~~~----l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~ 402 (857)
.+|+|+.|.++|-.. ...+-..+.||..||+++++++.+ .+++.+++|+.|.+.+-.... ..-..+..|++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 355555555554221 112233455788888888888888 678999999999998765543 12234778999999
Q ss_pred eeccCCCCCCcc------ccccCCCCCCCEEeccCCccc
Q 003011 403 LSLDDCCRLERF------PEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 403 L~Ls~~~~~~~~------~~~l~~l~~L~~L~L~~n~i~ 435 (857)
||+|.-...... -+....+|+|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 999986554322 223456899999999988765
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.00063 Score=66.10 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=35.5
Q ss_pred CCCCcEEEeeCCCCccCC--CcCCCCCCCCeeeCCCCcceeccc----cccCCCCCcEEeccccc
Q 003011 468 LSSLTGLNLSFRNITEIP--KDIGCLSSLRTLDLRGNNFVSLPA----SIKQFTQMEELILSNCN 526 (857)
Q Consensus 468 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~c~ 526 (857)
+++|+.|.|.+|+|.++. ..+..+|.|++|.+-+|+++.-+. -+..+|+|+.||.++-.
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 445555555555555522 234556777777777777664432 35667788888877644
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.01 E-value=0.0011 Score=64.54 Aligned_cols=81 Identities=16% Similarity=0.055 Sum_probs=48.3
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCc-CCCCCccEEEccCCCCC--ccCCCCCCCCccceeecc
Q 003011 215 DELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGK-KESFKLKWIDLHHCQYL--IRFPDPLETPNLERICLS 291 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~~~~l--~~lp~l~~l~~L~~L~L~ 291 (857)
.+...+++++|.+..++..-.++.|..|.|.+|.|+.+-..+ ..+++|+.|.|.+|.+. .++..+..+|.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 455666677776666555446677777777777777665555 33556777777766532 122235555666666666
Q ss_pred CCcc
Q 003011 292 DCID 295 (857)
Q Consensus 292 ~~~~ 295 (857)
+|..
T Consensus 122 ~Npv 125 (233)
T KOG1644|consen 122 GNPV 125 (233)
T ss_pred CCch
Confidence 6543
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.88 E-value=5e-05 Score=68.89 Aligned_cols=112 Identities=22% Similarity=0.251 Sum_probs=76.8
Q ss_pred ceEEEccCcccc--ccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCccee
Q 003011 376 LAELYMRQCTRL--KSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANW 453 (857)
Q Consensus 376 L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L 453 (857)
+..++|+.|+.. ...+..+.....|...+|++|.+....+......+.++.|++++|.|.++|..+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~------------ 96 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL------------ 96 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH------------
Confidence 445566666442 122223444556666777777554333333344567888888888888888763
Q ss_pred eccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccc
Q 003011 454 SYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASI 511 (857)
Q Consensus 454 ~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 511 (857)
..++.|+.|+++.|.+...|.-+..+.+|-.|+..+|.+..+|..+
T Consensus 97 ------------Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 97 ------------AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred ------------hhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 3578888899999988888877777888899999888888777553
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.82 E-value=0.00039 Score=70.23 Aligned_cols=209 Identities=16% Similarity=0.115 Sum_probs=109.3
Q ss_pred CCeeEEEEeCCCCCC-----CCCCC-CCCCccEEEcCCCCCc----ccc-------cCcCCCCCccEEEccCCCCCccCC
Q 003011 215 DELRYLHWHGYPLKT-----LPSNF-SPENLIELNLPYSKVE----QMW-------EGKKESFKLKWIDLHHCQYLIRFP 277 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~-----lp~~~-~l~~L~~L~Ls~n~l~----~l~-------~~~~~l~~L~~L~Ls~~~~l~~lp 277 (857)
..+..++|+||.+.. +...+ +-.+|+..+++.-... .++ +.+-.|++|+..+||+|.+-...|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 567777777776532 22222 4566666666543221 122 334456666666666666544444
Q ss_pred C-----CCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCccc-----
Q 003011 278 D-----PLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFP----- 347 (857)
Q Consensus 278 ~-----l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p----- 347 (857)
. ++..++|++|.+++|..-..-...|++ -|++|- .|+. ...-+.|++.....|. +...|
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la--~nKK------aa~kp~Le~vicgrNR-lengs~~~~a 178 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA--YNKK------AADKPKLEVVICGRNR-LENGSKELSA 178 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH--HHhh------hccCCCceEEEeccch-hccCcHHHHH
Confidence 1 445566666666554321111111110 011110 0111 1134566776666653 22222
Q ss_pred ---ccccCcceEEecCcccee------cCccccCCCcceEEEccCcccccc----ccccccCCCCCCEeeccCCCCCCcc
Q 003011 348 ---QFSGNIKQLYLCGTAIEE------VPSSVECLTELAELYMRQCTRLKS----ISSRICKLKSLHLLSLDDCCRLERF 414 (857)
Q Consensus 348 ---~~~~~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~Ls~~~~~~~~ 414 (857)
.+-.+|+.+.+..|.|.. +-..+..+.+|+.|+|.+|..+.. +...++..+.|+.|.+.+|-+...-
T Consensus 179 ~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G 258 (388)
T COG5238 179 ALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEG 258 (388)
T ss_pred HHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcccc
Confidence 122478888888888873 122355678899999999877643 3344566777888988888665322
Q ss_pred c----ccc--CCCCCCCEEeccCCcc
Q 003011 415 P----EIT--ETMECLEYFSLASTTI 434 (857)
Q Consensus 415 ~----~~l--~~l~~L~~L~L~~n~i 434 (857)
. ..+ ...++|..|-...|.+
T Consensus 259 ~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 259 VKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHHHHHHhhhhcCCCccccccchhhh
Confidence 1 111 1235566666655544
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.70 E-value=0.0005 Score=69.50 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=74.8
Q ss_pred ccccCCCCCCEeeccCCCCCCcccc----ccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCC
Q 003011 392 SRICKLKSLHLLSLDDCCRLERFPE----ITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPG 467 (857)
Q Consensus 392 ~~l~~l~~L~~L~Ls~~~~~~~~~~----~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~ 467 (857)
..+..+|.|+..+||+|.+....|+ .++.-+.|++|.+++|.+..+...--. ..|..|-.+ .....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig----kal~~la~n------KKaa~ 155 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG----KALFHLAYN------KKAAD 155 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHH----HHHHHHHHH------hhhcc
Confidence 3456677788888887777665554 345567788888887766533221000 000000000 00223
Q ss_pred CCCCcEEEeeCCCCccCCC-----cCCCCCCCCeeeCCCCcce--e----ccccccCCCCCcEEecccccccc-------
Q 003011 468 LSSLTGLNLSFRNITEIPK-----DIGCLSSLRTLDLRGNNFV--S----LPASIKQFTQMEELILSNCNLLQ------- 529 (857)
Q Consensus 468 l~~L~~L~Ls~n~l~~lp~-----~l~~l~~L~~L~Ls~n~l~--~----lp~~l~~l~~L~~L~L~~c~~l~------- 529 (857)
-|.|+......|++...|. .+..-.+|+.+.+..|.|. . +-..+..+.+|+.|||++|-.+.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3556666666666554332 1222246666666666654 1 11234556677777777766542
Q ss_pred -cCCCCCCCcceeecccc
Q 003011 530 -SLPELPPSLILLEARNC 546 (857)
Q Consensus 530 -~lp~l~~sL~~L~i~~C 546 (857)
.+|+++- |+.|.+.+|
T Consensus 236 ~al~~W~~-lrEL~lnDC 252 (388)
T COG5238 236 DALCEWNL-LRELRLNDC 252 (388)
T ss_pred HHhcccch-hhhccccch
Confidence 1233333 677777776
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.34 E-value=0.0024 Score=64.88 Aligned_cols=88 Identities=25% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCCCCCCcEEEeeCC--CCcc-CCCcCCCCCCCCeeeCCCCccee---ccccccCCCCCcEEecccccccccC------C
Q 003011 465 LPGLSSLTGLNLSFR--NITE-IPKDIGCLSSLRTLDLRGNNFVS---LPASIKQFTQMEELILSNCNLLQSL------P 532 (857)
Q Consensus 465 l~~l~~L~~L~Ls~n--~l~~-lp~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~c~~l~~l------p 532 (857)
+..+++|+.|.++.| .+.. ++.....+|+|++|++++|.+.. ++ .+..+.+|..|++.+|.-.+.- .
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHHH
Confidence 445778888888888 4444 55445566999999999998663 33 4677888999999999876521 1
Q ss_pred CCCCCcceeecccccCCCccc
Q 003011 533 ELPPSLILLEARNCKQLQSLP 553 (857)
Q Consensus 533 ~l~~sL~~L~i~~C~~L~~l~ 553 (857)
.+.++|+.|+-.++..=+...
T Consensus 140 ~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred HHhhhhccccccccCCccccc
Confidence 356778887776665544433
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.69 E-value=0.0058 Score=62.10 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.0
Q ss_pred CCCccEEEcCCC
Q 003011 236 PENLIELNLPYS 247 (857)
Q Consensus 236 l~~L~~L~Ls~n 247 (857)
+++|+.|.++.|
T Consensus 64 Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 64 LPKLKKLELSDN 75 (260)
T ss_pred cchhhhhcccCC
Confidence 334444444444
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.60 E-value=0.001 Score=77.00 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=17.6
Q ss_pred CCcceEEEccCccccc--cccccccCCCCCCEeeccCCCCC
Q 003011 373 LTELAELYMRQCTRLK--SISSRICKLKSLHLLSLDDCCRL 411 (857)
Q Consensus 373 l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~Ls~~~~~ 411 (857)
+++|+.|.+.+|..+. .+-.....+++|+.|++++|...
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 4455555555554311 11112234455566666555543
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.01 E-value=0.11 Score=47.97 Aligned_cols=104 Identities=17% Similarity=0.286 Sum_probs=48.7
Q ss_pred cChHhhcCCCCccEEEEecCCccccccceeecCCc-cccccCCeeEEEEeCCCCCCCCCC-C-CCCCccEEEcCCCCCcc
Q 003011 175 LSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNG-LDYLSDELRYLHWHGYPLKTLPSN-F-SPENLIELNLPYSKVEQ 251 (857)
Q Consensus 175 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~l~~ 251 (857)
+...+|.++++|+.+.+..+ ...+++. +... .+|+.+.+.++ +..++.. | ++.+|+.+.+.. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~~--------~~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~ 71 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT--------IKKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS 71 (129)
T ss_dssp E-TTTTTT-TT--EEEETST----------EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred ECHHHHhCCCCCCEEEECCC--------eeEeChhhcccc-ccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence 45678888888888887542 2234333 3333 46777777664 6666543 3 555677777765 5544
Q ss_pred ccc-CcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccC
Q 003011 252 MWE-GKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSD 292 (857)
Q Consensus 252 l~~-~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~ 292 (857)
++. .+..+.+|+.+++..+ ...++ .+.+. +|+.+.+..
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 443 3355667777776543 22332 34454 566655543
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.88 E-value=0.0036 Score=72.49 Aligned_cols=62 Identities=26% Similarity=0.292 Sum_probs=41.7
Q ss_pred CCCCCcEEEeeCCC-Ccc--CCCcCCCCCCCCeeeCCCCc-ce--eccccccCCCCCcEEeccccccc
Q 003011 467 GLSSLTGLNLSFRN-ITE--IPKDIGCLSSLRTLDLRGNN-FV--SLPASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~-l~~--lp~~l~~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~~L~L~~c~~l 528 (857)
.+++|+.|+++.+. +++ +..-...+++|+.|.+.+|. ++ .+-.....+++|++|+|++|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45777777777776 554 22222337788888877776 55 44445567788888888888776
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0017 Score=66.08 Aligned_cols=66 Identities=23% Similarity=0.256 Sum_probs=53.4
Q ss_pred CCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccc--cccCCCCCcEEecccccccccCC
Q 003011 466 PGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPA--SIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 466 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
..|+.|+.|.|+-|+|+++. .+..++.|++|+|..|.|.++.+ .+.++++|+.|.|..|+--+.-+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 46888999999999988864 35678899999999999887763 46889999999999998665444
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.0013 Score=66.81 Aligned_cols=56 Identities=21% Similarity=0.060 Sum_probs=28.0
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccc--cCcCCCCCccEEEccCCC
Q 003011 216 ELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMW--EGKKESFKLKWIDLHHCQ 271 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~--~~~~~l~~L~~L~Ls~~~ 271 (857)
.|++|.|+-|.+++|...-.+++|++|.|+.|.|..+- .-++++++|+.|.|..|.
T Consensus 42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 55555555555555544335555555555555555442 123444444444444443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.62 E-value=0.03 Score=34.26 Aligned_cols=18 Identities=56% Similarity=0.890 Sum_probs=9.2
Q ss_pred CCeeeCCCCcceeccccc
Q 003011 494 LRTLDLRGNNFVSLPASI 511 (857)
Q Consensus 494 L~~L~Ls~n~l~~lp~~l 511 (857)
|+.|+|++|+|+.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.54 E-value=0.04 Score=33.70 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=11.1
Q ss_pred CccEEEcCCCCCcccccCcC
Q 003011 238 NLIELNLPYSKVEQMWEGKK 257 (857)
Q Consensus 238 ~L~~L~Ls~n~l~~l~~~~~ 257 (857)
+|++|||++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666665555555443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.49 E-value=0.46 Score=43.74 Aligned_cols=95 Identities=19% Similarity=0.221 Sum_probs=41.2
Q ss_pred CCeeEEEEeCCCCCCCCCC-C-CCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC--CCCCCCccceee
Q 003011 215 DELRYLHWHGYPLKTLPSN-F-SPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERIC 289 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~ 289 (857)
.+|+.+.+.. .++.++.. | ...+|+.+.+..+ +..++. .+..+++|+.+.+.++ ...++ .+..+++|+.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 4666777654 45566443 3 5556777777664 665553 3455656777777542 22333 355566666666
Q ss_pred ccCCccCCccCCcccCCCCCcEEecc
Q 003011 290 LSDCIDLPCIPSSIENFNNLSILCLQ 315 (857)
Q Consensus 290 L~~~~~~~~~p~~i~~l~~L~~L~L~ 315 (857)
+..+ ....-...+.+. +|+.+.+.
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cCcc-ccEEchhhhcCC-CceEEEEC
Confidence 6542 221222334444 55555554
No 74
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.44 E-value=0.9 Score=57.32 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=85.1
Q ss_pred hHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHHHhhcCChhHHHHHHHh-HhccCHHHHHHhhhhhcCCCCCCHHH
Q 003011 3 LSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHNLKRISDRDVYEVLKIS-YDELNWEEKNIFLDIACFFKGEDKDY 81 (857)
Q Consensus 3 l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~L~~~~~~~i~~~Lk~S-Yd~L~~~~K~cFl~~a~Fp~~~~~~~ 81 (857)
...++.+.|+|.|+++..++..+++.... -......+...+...+.+.|.-. ++.||++.+..++..|+++ ..+.+-
T Consensus 207 ~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l 284 (903)
T PRK04841 207 ESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDAL 284 (903)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHH
Confidence 35689999999999999999887644210 01112222222334566655444 8999999999999999986 445554
Q ss_pred HHHHhcCCCchHHHHHHhhcccceee-ec--CCeEeccHHHHHHHHHHhhhc
Q 003011 82 VTRIQDDPDFVRYVLNVLVNKSLITI-SS--YNKLEMHDLLEEMGREIVRCE 130 (857)
Q Consensus 82 l~~~~~~~g~~~~~l~~Li~rsLi~~-~~--~~~~~MHDLl~dl~~~i~~~e 130 (857)
...+. +.+-+...+++|.+.+++.. .+ ...+.+|++++++.+.-...+
T Consensus 285 ~~~l~-~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 285 IVRVT-GEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHHHc-CCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 44443 22237889999999999753 22 236899999999988776433
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.65 E-value=0.087 Score=29.95 Aligned_cols=11 Identities=64% Similarity=0.915 Sum_probs=3.0
Q ss_pred CCeeeCCCCcc
Q 003011 494 LRTLDLRGNNF 504 (857)
Q Consensus 494 L~~L~Ls~n~l 504 (857)
|+.|+|++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.26 E-value=0.19 Score=28.56 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=4.1
Q ss_pred ccEEEcCCCCCcc
Q 003011 239 LIELNLPYSKVEQ 251 (857)
Q Consensus 239 L~~L~Ls~n~l~~ 251 (857)
|+.|+|++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.52 E-value=0.012 Score=58.53 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=60.5
Q ss_pred HhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCc
Q 003011 178 RAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGK 256 (857)
Q Consensus 178 ~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~ 256 (857)
..+......+.|+++.|+ ...+-..+..+ ..|..|+++.|.+..+|.++ .+..++.+++..|..+++|.+.
T Consensus 36 ~ei~~~kr~tvld~~s~r-------~vn~~~n~s~~-t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~ 107 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNR-------LVNLGKNFSIL-TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ 107 (326)
T ss_pred hhhhccceeeeehhhhhH-------HHhhccchHHH-HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc
Confidence 344556667777777765 23333444444 46777778888888888877 7777777788778888888777
Q ss_pred CCCCCccEEEccCCCC
Q 003011 257 KESFKLKWIDLHHCQY 272 (857)
Q Consensus 257 ~~l~~L~~L~Ls~~~~ 272 (857)
+..++++++++.++.+
T Consensus 108 ~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTEF 123 (326)
T ss_pred cccCCcchhhhccCcc
Confidence 7777777777777663
No 78
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=89.36 E-value=0.26 Score=29.20 Aligned_cols=20 Identities=70% Similarity=1.356 Sum_probs=17.7
Q ss_pred CccEEEcCCCCCcccccCcC
Q 003011 238 NLIELNLPYSKVEQMWEGKK 257 (857)
Q Consensus 238 ~L~~L~Ls~n~l~~l~~~~~ 257 (857)
+|++|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998763
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.76 E-value=0.012 Score=67.06 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=18.3
Q ss_pred CCCCEeeccCCCCCC----ccccccCCCCCCCEEeccCCccc
Q 003011 398 KSLHLLSLDDCCRLE----RFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 398 ~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
..|+.|++..|.... .+.+.+.....++.++++.|.+.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 344445555554442 22334444555556666555543
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.62 E-value=0.78 Score=29.13 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=12.9
Q ss_pred CCCCCeeeCCCCcceecccc
Q 003011 491 LSSLRTLDLRGNNFVSLPAS 510 (857)
Q Consensus 491 l~~L~~L~Ls~n~l~~lp~~ 510 (857)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666777777777666654
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.62 E-value=0.78 Score=29.13 Aligned_cols=20 Identities=50% Similarity=0.780 Sum_probs=12.9
Q ss_pred CCCCCeeeCCCCcceecccc
Q 003011 491 LSSLRTLDLRGNNFVSLPAS 510 (857)
Q Consensus 491 l~~L~~L~Ls~n~l~~lp~~ 510 (857)
+++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35666777777777666654
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.87 E-value=0.049 Score=54.34 Aligned_cols=79 Identities=15% Similarity=0.151 Sum_probs=50.6
Q ss_pred CCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccC
Q 003011 215 DELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSD 292 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~ 292 (857)
...+.||++.|++..+-..| -++.|+.|+++.|.+..+|+..+.+..++.+++..|. ....| ++...+.++++++.+
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhcc
Confidence 45667777777776666666 5667777777777777777777766666666666554 33444 455555555555555
Q ss_pred Cc
Q 003011 293 CI 294 (857)
Q Consensus 293 ~~ 294 (857)
+.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 43
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=0.38 Score=47.33 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=25.4
Q ss_pred cCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCC
Q 003011 157 TDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPK 195 (857)
Q Consensus 157 ~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~ 195 (857)
...+..-.+|.++.......-+.+.+++.++.|.+.++.
T Consensus 98 ~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 98 ADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred CCcceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 344555556666665555566677777888888887654
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.37 E-value=0.99 Score=28.65 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=11.4
Q ss_pred CCccEEEcCCCCCcccccC
Q 003011 237 ENLIELNLPYSKVEQMWEG 255 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~~~ 255 (857)
++|+.|+|++|+|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.37 E-value=0.99 Score=28.65 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=11.4
Q ss_pred CCccEEEcCCCCCcccccC
Q 003011 237 ENLIELNLPYSKVEQMWEG 255 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~~~ 255 (857)
++|+.|+|++|+|+.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666544
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.99 E-value=0.55 Score=46.25 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC--CCC-CCCccceeeccCCccCCcc-CCcccCCCCCc
Q 003011 236 PENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPL-ETPNLERICLSDCIDLPCI-PSSIENFNNLS 310 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~-~l~~L~~L~L~~~~~~~~~-p~~i~~l~~L~ 310 (857)
-..++.+|-+++.|.... +.+.+++.++.|.+.+|......- -++ -.++|+.|+|++|..++.- -..+..+++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 355777788887776432 456677778888888887654321 122 4578888888887654432 23456677777
Q ss_pred EEeccC
Q 003011 311 ILCLQG 316 (857)
Q Consensus 311 ~L~L~~ 316 (857)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 777655
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.75 E-value=2.4 Score=27.07 Aligned_cols=17 Identities=29% Similarity=0.448 Sum_probs=9.1
Q ss_pred CeeEEEEeCCCCCCCCC
Q 003011 216 ELRYLHWHGYPLKTLPS 232 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~ 232 (857)
+|++|+.++|.++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.36 E-value=2.8 Score=26.75 Aligned_cols=18 Identities=39% Similarity=0.698 Sum_probs=12.2
Q ss_pred CCCCeeeCCCCcceeccc
Q 003011 492 SSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 492 ~~L~~L~Ls~n~l~~lp~ 509 (857)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777764
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=69.12 E-value=0.06 Score=61.55 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCCCEeeccCCCCCC----ccccccCCCCCCCEEeccCCccc
Q 003011 398 KSLHLLSLDDCCRLE----RFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 398 ~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
..++.++++.|++.. .+.+.+..++.++.|.++.|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 455666666665553 22334445556666666665554
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.80 E-value=7.7 Score=24.83 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=9.9
Q ss_pred CCccEEEcCCCCCccc
Q 003011 237 ENLIELNLPYSKVEQM 252 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l 252 (857)
.+|++|+|+.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666666544
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.58 E-value=10 Score=23.35 Aligned_cols=14 Identities=43% Similarity=0.634 Sum_probs=6.1
Q ss_pred CCCCeeeCCCCcce
Q 003011 492 SSLRTLDLRGNNFV 505 (857)
Q Consensus 492 ~~L~~L~Ls~n~l~ 505 (857)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555543
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.52 E-value=15 Score=23.16 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=6.1
Q ss_pred CCCcEEecccccc
Q 003011 515 TQMEELILSNCNL 527 (857)
Q Consensus 515 ~~L~~L~L~~c~~ 527 (857)
++|+.|+|++|+.
T Consensus 2 ~~L~~L~l~~C~~ 14 (26)
T smart00367 2 PNLRELDLSGCTN 14 (26)
T ss_pred CCCCEeCCCCCCC
Confidence 3444555554443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=38.34 E-value=13 Score=42.36 Aligned_cols=64 Identities=23% Similarity=0.301 Sum_probs=41.6
Q ss_pred CCCCCcEEEeeCCCCccC---CCcCCCCCCCCeeeCCCC--cceecccccc--CCCCCcEEecccccccccC
Q 003011 467 GLSSLTGLNLSFRNITEI---PKDIGCLSSLRTLDLRGN--NFVSLPASIK--QFTQMEELILSNCNLLQSL 531 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n--~l~~lp~~l~--~l~~L~~L~L~~c~~l~~l 531 (857)
+.+.+..++|++|++..+ ..--...|.|+.|+|++| .+...+ ++. ....|++|.+.+|+.-+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 467777888888877663 233345788888888888 344322 222 2346788888888876544
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=37.14 E-value=1.1e+02 Score=32.73 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=60.1
Q ss_pred hHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHH-HhhcCC---hhHHHHHHHhHhccCHHHHHHhh-hhhcCCCC-
Q 003011 3 LSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHN-LKRISD---RDVYEVLKISYDELNWEEKNIFL-DIACFFKG- 76 (857)
Q Consensus 3 l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~-L~~~~~---~~i~~~Lk~SYd~L~~~~K~cFl-~~a~Fp~~- 76 (857)
....|++.|+|.|=.+..++..+ |..+... -..... .++.+.+..+|.+|+++++..+. .++.+..+
T Consensus 183 al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~ 255 (305)
T TIGR00635 183 AALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGP 255 (305)
T ss_pred HHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCc
Confidence 45678999999995554444322 2111000 000000 12333456678899999888666 55666433
Q ss_pred CCHHHHHHHhcCCCc-hHHHHH-HhhcccceeeecCCe
Q 003011 77 EDKDYVTRIQDDPDF-VRYVLN-VLVNKSLITISSYNK 112 (857)
Q Consensus 77 ~~~~~l~~~~~~~g~-~~~~l~-~Li~rsLi~~~~~~~ 112 (857)
...+.+...+...-. ++..++ .|++++||.....|+
T Consensus 256 ~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 256 VGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred ccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 256666666644333 777788 699999997654443
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.70 E-value=1.7e+02 Score=33.18 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=12.5
Q ss_pred CCCccEEEccCCCCCccCC
Q 003011 259 SFKLKWIDLHHCQYLIRFP 277 (857)
Q Consensus 259 l~~L~~L~Ls~~~~l~~lp 277 (857)
-+.+++++++.|.+....|
T Consensus 164 npr~r~~dls~npi~dkvp 182 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVP 182 (553)
T ss_pred cchhhhhccCCCcccccCC
Confidence 3556777777777665544
No 96
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=30.35 E-value=38 Score=21.89 Aligned_cols=13 Identities=38% Similarity=0.524 Sum_probs=7.4
Q ss_pred CccEEEcCCCCCc
Q 003011 238 NLIELNLPYSKVE 250 (857)
Q Consensus 238 ~L~~L~Ls~n~l~ 250 (857)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666665554
No 97
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=27.05 E-value=58 Score=35.53 Aligned_cols=105 Identities=13% Similarity=0.123 Sum_probs=62.2
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHHHhhcCC---hhHHHHHHHhHhccCHHHHHHhh-hhhcCCCCC
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHNLKRISD---RDVYEVLKISYDELNWEEKNIFL-DIACFFKGE 77 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~L~~~~~---~~i~~~Lk~SYd~L~~~~K~cFl-~~a~Fp~~~ 77 (857)
+....|+++|+|.|=.+..+...+ ..|-.+-. -..... .+..+.+...|..|++..+..+. ....|..+.
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~ 276 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGP 276 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCc
Confidence 346789999999995444433322 12211100 000111 22445566778899998888775 666666554
Q ss_pred -CHHHHHHHhcCCCc-hHHHHH-HhhcccceeeecCCe
Q 003011 78 -DKDYVTRIQDDPDF-VRYVLN-VLVNKSLITISSYNK 112 (857)
Q Consensus 78 -~~~~l~~~~~~~g~-~~~~l~-~Li~rsLi~~~~~~~ 112 (857)
..+.+...+...-- ++..++ .|++++||+....|+
T Consensus 277 ~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr 314 (328)
T PRK00080 277 VGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR 314 (328)
T ss_pred eeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence 67777666643322 666777 999999997654443
No 98
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.30 E-value=32 Score=39.38 Aligned_cols=79 Identities=19% Similarity=0.130 Sum_probs=40.8
Q ss_pred CCCCccEEEcCCCCCcccc---cCcCCCCCccEEEccCCCC-CccCCCCC--CCCccceeeccCCccCCccCC------c
Q 003011 235 SPENLIELNLPYSKVEQMW---EGKKESFKLKWIDLHHCQY-LIRFPDPL--ETPNLERICLSDCIDLPCIPS------S 302 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~~~~-l~~lp~l~--~l~~L~~L~L~~~~~~~~~p~------~ 302 (857)
+.+.+..++|++|++..+- .-....++|+.|+|++|.. +...+.+. +...|++|-+.||........ .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 3445555566666655442 1124456777777777621 11122222 224577777777766543321 1
Q ss_pred -ccCCCCCcEEe
Q 003011 303 -IENFNNLSILC 313 (857)
Q Consensus 303 -i~~l~~L~~L~ 313 (857)
-..+++|..||
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 12567777776
No 99
>PF13730 HTH_36: Helix-turn-helix domain
Probab=24.05 E-value=68 Score=24.27 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=32.2
Q ss_pred ccCHHHHHHhhhhhcCCCCC-----CHHHHHHHhcCCCc----hHHHHHHhhcccce
Q 003011 58 ELNWEEKNIFLDIACFFKGE-----DKDYVTRIQDDPDF----VRYVLNVLVNKSLI 105 (857)
Q Consensus 58 ~L~~~~K~cFl~~a~Fp~~~-----~~~~l~~~~~~~g~----~~~~l~~Li~rsLi 105 (857)
+|++.++.++++++-|..+. ..+++.... |. ...++++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~---g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL---GVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH---CcCHHHHHHHHHHHHHCcCC
Confidence 57888888888888876433 234444333 55 78899999999886
No 100
>COG3899 Predicted ATPase [General function prediction only]
Probab=20.40 E-value=2.4e+02 Score=35.31 Aligned_cols=126 Identities=17% Similarity=0.305 Sum_probs=85.7
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCC-------CHHHHHHHHHHHhhcCC-hhHHHHHHHhHhccCHHHHHHhhhhhcC
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGR-------RKVDWENALHNLKRISD-RDVYEVLKISYDELNWEEKNIFLDIACF 73 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k-------~~~~W~~~l~~L~~~~~-~~i~~~Lk~SYd~L~~~~K~cFl~~a~F 73 (857)
++.+.|+++.+|+|+=+.=+=..|... +...|..=..++...+. +.+.+.+..--+.||...|++.-.-||+
T Consensus 241 p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~i 320 (849)
T COG3899 241 PLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAACI 320 (849)
T ss_pred hHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 567899999999999887777777643 23345543334333221 3356678888999999999999999999
Q ss_pred CCCCCHHHHHHHhcCCCc--hHHHHHHhhcccceeeec------C-CeE---eccHHHHHHHHHHh
Q 003011 74 FKGEDKDYVTRIQDDPDF--VRYVLNVLVNKSLITISS------Y-NKL---EMHDLLEEMGREIV 127 (857)
Q Consensus 74 p~~~~~~~l~~~~~~~g~--~~~~l~~Li~rsLi~~~~------~-~~~---~MHDLl~dl~~~i~ 127 (857)
-+..+.+.|..++...+. +..-++.|.+..++..++ . ... --||.+|+.+-...
T Consensus 321 G~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 321 GNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred CccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 888899998888876554 556666666555554221 1 111 35777777664433
Done!