Query 003011
Match_columns 857
No_of_seqs 920 out of 5447
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 4.1E-34 1.4E-38 340.7 27.1 339 206-549 198-600 (636)
2 4eco_A Uncharacterized protein 100.0 5.3E-34 1.8E-38 339.7 24.5 327 224-555 192-584 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 1.7E-33 5.7E-38 341.5 27.3 339 206-549 440-840 (876)
4 3rgz_A Protein brassinosteroid 100.0 7.4E-34 2.5E-38 346.2 22.5 369 175-555 238-723 (768)
5 3rgz_A Protein brassinosteroid 100.0 1E-33 3.4E-38 345.0 22.9 367 175-551 309-742 (768)
6 3t6q_A CD180 antigen; protein- 100.0 2.8E-32 9.4E-37 324.0 34.3 357 159-527 34-461 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-32 1.4E-36 322.5 33.1 373 168-555 40-539 (606)
8 2z81_A CD282 antigen, TOLL-lik 100.0 3.3E-32 1.1E-36 319.3 25.2 373 158-547 26-508 (549)
9 4ecn_A Leucine-rich repeat pro 100.0 2.4E-32 8.1E-37 331.4 24.1 325 225-555 435-824 (876)
10 3t6q_A CD180 antigen; protein- 100.0 1.6E-30 5.4E-35 308.9 35.9 375 159-546 58-510 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 3E-31 1E-35 326.5 28.5 414 157-588 23-556 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 4.7E-31 1.6E-35 311.0 27.8 379 159-553 29-510 (570)
13 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-30 4.6E-35 309.5 31.9 378 157-551 55-560 (606)
14 2z7x_B TOLL-like receptor 1, v 100.0 7.7E-31 2.6E-35 305.7 25.2 370 158-548 21-480 (520)
15 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-29 1E-33 302.2 35.0 378 158-546 25-464 (680)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-30 5.6E-35 304.9 22.0 352 184-546 26-441 (549)
17 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-30 1.1E-34 303.4 23.8 370 158-548 52-509 (562)
18 3j0a_A TOLL-like receptor 5; m 100.0 5.5E-29 1.9E-33 306.3 34.5 352 182-547 22-462 (844)
19 3v47_A TOLL-like receptor 5B a 100.0 1.4E-29 4.7E-34 289.8 27.2 337 184-529 30-409 (455)
20 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-28 4.3E-33 296.6 36.9 259 285-546 250-570 (680)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.7E-30 5.7E-35 302.8 19.1 365 165-555 5-462 (520)
22 2z63_A TOLL-like receptor 4, v 100.0 1.7E-29 5.9E-34 297.6 26.8 383 157-554 51-536 (570)
23 1jl5_A Outer protein YOPM; leu 100.0 3.8E-29 1.3E-33 285.1 27.0 315 215-567 91-406 (454)
24 3v47_A TOLL-like receptor 5B a 100.0 8.1E-29 2.8E-33 283.5 26.5 339 213-553 28-412 (455)
25 1o6v_A Internalin A; bacterial 100.0 1.1E-28 3.6E-33 283.4 27.3 321 180-547 64-386 (466)
26 1o6v_A Internalin A; bacterial 100.0 3.9E-28 1.3E-32 278.6 28.4 321 157-529 67-389 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-28 5.5E-33 288.8 23.9 366 165-555 36-491 (562)
28 4fmz_A Internalin; leucine ric 100.0 4.8E-28 1.6E-32 266.7 25.3 303 180-527 40-345 (347)
29 3o6n_A APL1; leucine-rich repe 100.0 5.6E-28 1.9E-32 270.8 25.2 304 182-528 43-352 (390)
30 2id5_A Lingo-1, leucine rich r 100.0 1.8E-27 6.3E-32 274.0 28.0 290 214-528 31-333 (477)
31 3o6n_A APL1; leucine-rich repe 100.0 1.8E-27 6E-32 266.7 26.3 300 215-547 45-350 (390)
32 1jl5_A Outer protein YOPM; leu 100.0 1.9E-26 6.4E-31 262.9 31.8 318 184-547 91-427 (454)
33 3oja_B Anopheles plasmodium-re 100.0 2.1E-27 7.1E-32 281.1 24.8 304 182-528 49-358 (597)
34 2id5_A Lingo-1, leucine rich r 100.0 6.8E-27 2.3E-31 269.2 28.4 307 217-547 13-331 (477)
35 3oja_B Anopheles plasmodium-re 100.0 4.7E-27 1.6E-31 278.1 26.0 301 215-547 51-356 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 2.7E-26 9.1E-31 261.8 30.8 229 180-435 38-267 (457)
37 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-26 3.8E-31 276.9 28.4 372 165-547 57-578 (635)
38 4fmz_A Internalin; leucine ric 99.9 3.1E-26 1.1E-30 252.2 25.4 301 211-547 41-344 (347)
39 3bz5_A Internalin-J, INLJ; leu 99.9 9.8E-26 3.3E-30 257.2 28.2 296 209-563 37-334 (457)
40 1xku_A Decorin; proteoglycan, 99.9 5.3E-25 1.8E-29 240.6 26.5 283 184-526 31-330 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-25 1E-29 242.9 24.2 282 185-526 34-331 (332)
42 1xku_A Decorin; proteoglycan, 99.9 2.3E-24 8E-29 235.5 26.9 270 184-503 52-330 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-24 7.5E-29 236.0 24.8 278 216-546 34-330 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-25 7.6E-30 241.7 13.9 249 215-532 50-308 (313)
45 3g06_A SSPH2 (leucine-rich rep 99.9 9.1E-24 3.1E-28 248.2 28.1 261 185-532 41-301 (622)
46 4g8a_A TOLL-like receptor 4; l 99.9 3.5E-23 1.2E-27 246.6 31.2 360 157-528 75-580 (635)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-24 4.4E-29 235.6 15.4 169 361-553 135-308 (313)
48 2z80_A TOLL-like receptor 2, v 99.9 9E-24 3.1E-28 233.2 17.4 272 217-530 33-316 (353)
49 4fcg_A Uncharacterized protein 99.9 2.2E-23 7.4E-28 227.5 19.4 228 182-439 79-318 (328)
50 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-22 4.4E-27 238.4 26.0 263 160-512 42-305 (622)
51 4fcg_A Uncharacterized protein 99.9 2.3E-23 8E-28 227.2 18.2 228 215-526 81-312 (328)
52 1z7x_W Ribonuclease inhibitor; 99.9 3E-26 1E-30 262.6 -7.0 346 179-546 23-437 (461)
53 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-23 4.1E-28 228.5 8.8 239 260-530 34-277 (317)
54 2z66_A Variable lymphocyte rec 99.9 1.8E-22 6.2E-27 218.0 17.3 241 218-505 10-261 (306)
55 3zyi_A Leucine-rich repeat-con 99.9 2.7E-21 9.3E-26 220.7 25.3 222 217-441 56-285 (452)
56 2z66_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 211.3 20.2 240 240-527 10-260 (306)
57 3zyj_A Leucine-rich repeat-con 99.9 3.4E-21 1.2E-25 219.1 24.5 222 217-441 45-274 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 7.3E-22 2.5E-26 211.0 16.6 221 218-505 14-238 (285)
59 3o53_A Protein LRIM1, AGAP0063 99.9 5E-23 1.7E-27 223.6 5.6 259 262-550 12-276 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-20 3.7E-25 201.9 23.1 224 239-529 13-239 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 1.5E-20 5E-25 214.7 24.4 221 214-435 74-303 (452)
62 2z80_A TOLL-like receptor 2, v 99.9 1.6E-21 5.6E-26 215.0 15.3 265 235-547 29-312 (353)
63 3zyj_A Leucine-rich repeat-con 99.9 2.2E-20 7.7E-25 212.4 24.8 221 214-435 63-292 (440)
64 3oja_A Leucine-rich immune mol 99.9 1.1E-21 3.7E-26 225.7 13.0 233 237-524 34-271 (487)
65 1wwl_A Monocyte differentiatio 99.9 1.4E-22 4.9E-27 219.5 5.0 241 215-528 43-309 (312)
66 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-23 5.8E-28 239.6 -5.2 340 184-547 3-409 (461)
67 3oja_A Leucine-rich immune mol 99.8 3.5E-21 1.2E-25 221.4 12.9 220 259-532 33-255 (487)
68 1wwl_A Monocyte differentiatio 99.8 1.7E-21 5.9E-26 210.9 1.5 172 353-547 123-307 (312)
69 2z62_A TOLL-like receptor 4, v 99.8 4.8E-19 1.6E-23 188.1 20.0 97 220-317 12-110 (276)
70 3ogk_B Coronatine-insensitive 99.8 7.4E-22 2.5E-26 233.5 -4.4 358 180-547 108-524 (592)
71 2z62_A TOLL-like receptor 4, v 99.8 8.6E-19 2.9E-23 186.1 19.7 224 240-528 10-237 (276)
72 1p9a_G Platelet glycoprotein I 99.8 3.2E-18 1.1E-22 183.0 21.4 175 284-527 32-207 (290)
73 1p9a_G Platelet glycoprotein I 99.8 3.9E-18 1.3E-22 182.3 20.9 170 352-548 32-207 (290)
74 2o6q_A Variable lymphocyte rec 99.8 1.4E-17 4.8E-22 176.2 23.2 61 467-527 155-217 (270)
75 3ogk_B Coronatine-insensitive 99.8 7.5E-21 2.6E-25 224.8 -2.4 312 215-529 164-527 (592)
76 4ay9_X Follicle-stimulating ho 99.8 3.8E-18 1.3E-22 187.7 17.2 194 218-413 12-217 (350)
77 2o6q_A Variable lymphocyte rec 99.8 2.6E-17 8.7E-22 174.2 22.1 196 216-435 17-218 (270)
78 2xwt_C Thyrotropin receptor; s 99.8 3.1E-18 1.1E-22 177.7 14.6 99 402-526 134-237 (239)
79 3rfs_A Internalin B, repeat mo 99.8 3.6E-18 1.2E-22 180.9 15.2 137 372-537 107-244 (272)
80 4glp_A Monocyte differentiatio 99.7 5.8E-18 2E-22 183.0 14.4 135 369-528 164-307 (310)
81 3rfs_A Internalin B, repeat mo 99.7 1.2E-17 4.2E-22 176.8 16.6 100 216-316 42-142 (272)
82 2p1m_B Transport inhibitor res 99.7 1E-20 3.4E-25 223.8 -8.4 357 180-548 101-518 (594)
83 2xwt_C Thyrotropin receptor; s 99.7 1.6E-17 5.3E-22 172.4 15.2 194 352-549 32-239 (239)
84 1h6u_A Internalin H; cell adhe 99.7 2.9E-17 1E-21 177.2 16.9 194 216-440 42-235 (308)
85 2ast_B S-phase kinase-associat 99.7 3.7E-19 1.3E-23 194.6 1.9 221 184-432 47-282 (336)
86 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.6E-22 178.6 15.2 59 467-527 171-229 (308)
87 2a5y_B CED-4; apoptosis; HET: 99.7 6.2E-19 2.1E-23 205.5 3.3 128 2-132 317-473 (549)
88 4ay9_X Follicle-stimulating ho 99.7 6.3E-17 2.2E-21 178.0 18.5 233 240-543 12-253 (350)
89 4glp_A Monocyte differentiatio 99.7 4.8E-18 1.6E-22 183.6 9.1 199 261-505 92-307 (310)
90 2ast_B S-phase kinase-associat 99.7 1.2E-18 3.9E-23 190.6 3.0 196 215-432 47-257 (336)
91 2ca6_A RAN GTPase-activating p 99.7 2.7E-19 9.4E-24 199.7 -2.2 253 216-531 10-319 (386)
92 2p1m_B Transport inhibitor res 99.7 8.2E-20 2.8E-24 216.0 -7.9 366 177-548 59-493 (594)
93 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 164.1 18.5 155 352-529 36-193 (251)
94 2ca6_A RAN GTPase-activating p 99.7 7.4E-19 2.5E-23 196.2 -1.9 211 204-436 22-288 (386)
95 3goz_A Leucine-rich repeat-con 99.7 1.3E-18 4.5E-23 192.4 -2.3 61 469-529 225-298 (362)
96 3m19_A Variable lymphocyte rec 99.7 8.6E-16 2.9E-20 160.5 18.4 171 352-547 15-190 (251)
97 3cvr_A Invasion plasmid antige 99.7 6.9E-16 2.4E-20 179.0 17.4 184 185-418 60-250 (571)
98 3cvr_A Invasion plasmid antige 99.7 4.1E-16 1.4E-20 180.9 15.5 195 159-398 60-254 (571)
99 3goz_A Leucine-rich repeat-con 99.6 5E-18 1.7E-22 187.7 -3.0 232 238-505 23-297 (362)
100 2o6s_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 147.6 16.3 153 352-533 29-183 (208)
101 3e6j_A Variable lymphocyte rec 99.6 8.1E-15 2.8E-19 150.8 15.5 153 352-529 20-173 (229)
102 2v9t_B SLIT homolog 2 protein 99.6 8.6E-15 2.9E-19 149.6 15.5 149 354-527 14-164 (220)
103 3sfz_A APAF-1, apoptotic pepti 99.6 1.5E-15 5.3E-20 195.0 11.9 128 2-130 308-452 (1249)
104 2o6s_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 146.6 15.7 172 354-554 10-183 (208)
105 1h6t_A Internalin B; cell adhe 99.6 1.1E-14 3.8E-19 155.5 15.3 172 215-439 46-217 (291)
106 1dce_A Protein (RAB geranylger 99.6 3.9E-18 1.3E-22 198.9 -13.5 214 235-522 347-567 (567)
107 1h6t_A Internalin B; cell adhe 99.6 1.4E-14 4.9E-19 154.7 15.2 169 328-529 44-214 (291)
108 4ezg_A Putative uncharacterize 99.6 1.3E-14 4.3E-19 145.6 11.6 148 351-527 44-193 (197)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 3.2E-14 1.1E-18 145.3 14.7 149 355-528 15-166 (220)
110 1vt4_I APAF-1 related killer D 99.5 4.8E-15 1.6E-19 176.0 9.2 107 10-123 322-436 (1221)
111 1m9s_A Internalin B; cell inva 99.5 3.1E-14 1.1E-18 167.0 15.9 172 215-439 43-214 (605)
112 2xot_A Amphoterin-induced prot 99.5 3.2E-14 1.1E-18 157.0 14.9 153 352-527 40-201 (361)
113 4ezg_A Putative uncharacterize 99.5 2.8E-14 9.7E-19 143.0 12.1 109 215-324 44-153 (197)
114 1m9s_A Internalin B; cell inva 99.5 4.4E-14 1.5E-18 165.7 15.4 170 328-530 41-212 (605)
115 2v70_A SLIT-2, SLIT homolog 2 99.5 2E-13 6.9E-18 139.4 16.9 148 334-505 15-166 (220)
116 2v9t_B SLIT homolog 2 protein 99.5 2.7E-13 9.1E-18 138.5 17.1 140 343-505 23-165 (220)
117 2xot_A Amphoterin-induced prot 99.5 8E-14 2.7E-18 153.8 14.0 153 354-532 21-179 (361)
118 1xeu_A Internalin C; cellular 99.5 2.6E-14 8.8E-19 150.3 9.2 165 353-529 21-186 (263)
119 1xeu_A Internalin C; cellular 99.5 4.5E-14 1.5E-18 148.4 9.2 172 236-439 18-189 (263)
120 1z6t_A APAF-1, apoptotic prote 99.5 6.7E-14 2.3E-18 165.1 10.8 153 2-155 308-496 (591)
121 3e6j_A Variable lymphocyte rec 99.5 7E-13 2.4E-17 136.2 16.9 148 334-506 23-173 (229)
122 2ell_A Acidic leucine-rich nuc 99.4 3.8E-13 1.3E-17 131.0 9.4 60 468-527 94-159 (168)
123 1dce_A Protein (RAB geranylger 99.4 1.6E-14 5.5E-19 168.4 -1.3 67 465-532 482-550 (567)
124 2ell_A Acidic leucine-rich nuc 99.4 5.6E-13 1.9E-17 129.8 9.6 136 351-510 24-165 (168)
125 4b8c_D Glucose-repressible alc 99.4 2.4E-13 8.1E-18 163.4 5.9 165 353-546 203-369 (727)
126 2je0_A Acidic leucine-rich nuc 99.4 7.6E-13 2.6E-17 126.0 7.5 125 374-524 17-149 (149)
127 1w8a_A SLIT protein; signaling 99.3 5.5E-12 1.9E-16 125.7 13.6 127 354-505 11-139 (192)
128 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.6E-16 122.9 14.0 83 354-439 13-95 (193)
129 1a9n_A U2A', U2A'; complex (nu 99.3 2.9E-12 9.8E-17 125.8 8.9 131 370-527 15-152 (176)
130 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.9E-16 122.7 13.3 123 218-341 11-137 (192)
131 2je0_A Acidic leucine-rich nuc 99.3 3E-12 1E-16 121.9 7.7 126 350-501 16-149 (149)
132 4b8c_D Glucose-repressible alc 99.3 2.4E-12 8.3E-17 154.7 7.8 177 352-553 174-358 (727)
133 3sb4_A Hypothetical leucine ri 99.3 6E-12 2E-16 136.8 9.9 247 183-443 48-318 (329)
134 2wfh_A SLIT homolog 2 protein 99.3 2.5E-11 8.5E-16 121.0 13.5 122 218-341 13-137 (193)
135 2o6r_A Variable lymphocyte rec 99.3 3.8E-11 1.3E-15 117.8 14.3 128 353-529 9-138 (177)
136 3sb4_A Hypothetical leucine ri 99.2 3.2E-11 1.1E-15 131.1 13.6 283 183-522 24-328 (329)
137 1a9n_A U2A', U2A'; complex (nu 99.2 1.2E-11 4.1E-16 121.3 5.9 132 352-507 20-155 (176)
138 2o6r_A Variable lymphocyte rec 99.2 1.4E-10 4.6E-15 113.8 13.4 124 400-549 9-137 (177)
139 1ds9_A Outer arm dynein; leuci 99.1 7.8E-13 2.7E-17 132.6 -7.3 115 363-505 37-153 (198)
140 4fdw_A Leucine rich hypothetic 99.1 5.9E-09 2E-13 116.0 21.7 128 181-325 110-242 (401)
141 1ds9_A Outer arm dynein; leuci 99.0 1.6E-12 5.3E-17 130.4 -8.0 133 373-532 17-157 (198)
142 4fdw_A Leucine rich hypothetic 99.0 2.1E-08 7.1E-13 111.6 23.1 58 466-526 297-356 (401)
143 2r9u_A Variable lymphocyte rec 99.0 1.2E-09 4.2E-14 106.7 11.1 88 398-508 33-121 (174)
144 4fs7_A Uncharacterized protein 99.0 3.1E-08 1.1E-12 110.2 23.8 325 171-552 58-393 (394)
145 3g39_A Variable lymphocyte rec 99.0 2E-09 6.7E-14 104.8 11.2 100 217-317 11-112 (170)
146 2r9u_A Variable lymphocyte rec 99.0 2.6E-09 8.9E-14 104.3 11.4 108 354-486 15-122 (174)
147 3g39_A Variable lymphocyte rec 99.0 2.6E-09 8.9E-14 103.9 11.1 88 352-441 10-97 (170)
148 2ifg_A High affinity nerve gro 98.7 5.5E-08 1.9E-12 106.2 10.6 87 355-442 12-100 (347)
149 4fs7_A Uncharacterized protein 98.7 2.5E-06 8.4E-11 94.8 24.0 312 158-520 71-393 (394)
150 4gt6_A Cell surface protein; l 98.6 7.6E-06 2.6E-10 90.8 26.8 304 172-526 51-368 (394)
151 3un9_A NLR family member X1; l 98.6 3.2E-09 1.1E-13 117.0 -0.7 136 374-528 101-252 (372)
152 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.7E-12 103.8 11.0 103 379-505 13-116 (347)
153 3un9_A NLR family member X1; l 98.5 5.5E-09 1.9E-13 115.0 -2.9 163 259-436 71-253 (372)
154 4h09_A Hypothetical leucine ri 98.4 5.6E-05 1.9E-09 83.2 27.4 58 465-523 282-341 (379)
155 2ra8_A Uncharacterized protein 98.3 2.5E-07 8.4E-12 101.1 5.2 144 366-528 164-320 (362)
156 4h09_A Hypothetical leucine ri 98.3 0.0002 7E-09 78.6 26.9 285 172-508 57-348 (379)
157 4gt6_A Cell surface protein; l 98.3 5.9E-05 2E-09 83.6 22.1 303 172-526 75-389 (394)
158 2ra8_A Uncharacterized protein 98.3 3.2E-07 1.1E-11 100.2 3.3 150 352-526 173-341 (362)
159 3e4g_A ATP synthase subunit S, 97.8 5.7E-06 1.9E-10 79.6 2.9 86 236-321 60-153 (176)
160 1io0_A Tropomodulin; LRR prote 97.7 7.8E-06 2.7E-10 80.3 1.9 60 468-527 92-163 (185)
161 3e4g_A ATP synthase subunit S, 97.5 2.4E-05 8.2E-10 75.3 2.2 94 252-345 53-154 (176)
162 1io0_A Tropomodulin; LRR prote 97.5 2.5E-05 8.7E-10 76.6 1.3 118 369-505 31-164 (185)
163 3rw6_A Nuclear RNA export fact 97.4 7.5E-05 2.6E-09 77.3 4.4 65 467-532 168-237 (267)
164 3rw6_A Nuclear RNA export fact 97.4 6.5E-05 2.2E-09 77.8 3.2 77 236-313 169-257 (267)
165 3rfe_A Platelet glycoprotein I 95.3 0.023 8E-07 51.6 6.0 53 219-272 12-67 (130)
166 3rfe_A Platelet glycoprotein I 95.0 0.031 1E-06 50.8 5.9 54 472-527 11-67 (130)
167 1pgv_A TMD-1, tropomodulin TMD 94.8 0.012 4E-07 57.6 2.6 34 469-502 98-136 (197)
168 1pgv_A TMD-1, tropomodulin TMD 93.1 0.026 8.9E-07 55.1 1.4 65 371-435 38-111 (197)
169 2qen_A Walker-type ATPase; unk 90.4 1.4 4.7E-05 46.8 11.4 112 3-122 227-347 (350)
170 2fna_A Conserved hypothetical 89.9 0.65 2.2E-05 49.5 8.3 110 5-122 233-355 (357)
171 1w5s_A Origin recognition comp 60.8 7.2 0.00025 42.2 5.0 100 3-108 241-371 (412)
172 2v1u_A Cell division control p 56.0 46 0.0016 35.1 10.4 100 2-108 226-351 (387)
173 2qby_B CDC6 homolog 3, cell di 36.5 1E+02 0.0034 32.4 9.2 99 3-108 223-339 (384)
174 1hqc_A RUVB; extended AAA-ATPa 30.1 68 0.0023 32.9 6.3 95 3-112 192-302 (324)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.1e-34 Score=340.69 Aligned_cols=339 Identities=14% Similarity=0.166 Sum_probs=268.8
Q ss_pred cCCccccccCCeeEEEEeCCCCCC------------------CCCCC---CCCCccEEEcCCCCCc-ccccCcCCCCCcc
Q 003011 206 LHNGLDYLSDELRYLHWHGYPLKT------------------LPSNF---SPENLIELNLPYSKVE-QMWEGKKESFKLK 263 (857)
Q Consensus 206 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~---~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 263 (857)
+|..+..+ ++|++|++++|.+.. +|..+ ++++|++|+|++|.+. .+|..+.++++|+
T Consensus 198 ip~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 77888888 589999999999888 88876 4889999999998865 6788889999999
Q ss_pred EEEccCCC-CCc-cCC-CCCCC------CccceeeccCCccCCccCC--cccCCCCCcEEeccCCCCCcccCCCC-CCCC
Q 003011 264 WIDLHHCQ-YLI-RFP-DPLET------PNLERICLSDCIDLPCIPS--SIENFNNLSILCLQGCESLRRFPSNI-HFRS 331 (857)
Q Consensus 264 ~L~Ls~~~-~l~-~lp-~l~~l------~~L~~L~L~~~~~~~~~p~--~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~ 331 (857)
+|+|++|+ +.. .+| .+..+ ++|++|++++|... .+|. .++++++|++|++++|...+.+| .+ .+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99999997 555 566 45554 89999999998776 8888 89999999999998866555888 45 7888
Q ss_pred CcEEEcCCCCCCCccccccc---C-cceEEecCccceecCccccCCC--cceEEEccCcccccccccccc-------CCC
Q 003011 332 PITLDFSDCLNLTEFPQFSG---N-IKQLYLCGTAIEEVPSSVECLT--ELAELYMRQCTRLKSISSRIC-------KLK 398 (857)
Q Consensus 332 L~~L~Ls~~~~l~~~p~~~~---~-L~~L~L~~~~l~~lp~~l~~l~--~L~~L~L~~~~~l~~lp~~l~-------~l~ 398 (857)
|+.|++++|... .+|..+. + |+.|++++|.++.+|..+..++ +|+.|++++|...+..|..+. .++
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 999999988543 6665443 5 8889999999998888877654 899999999988888888777 788
Q ss_pred CCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCc-----CCcceeeccccCCc-CCC-CC--CCC
Q 003011 399 SLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILP-----SSIANWSYGCRGLI-LPP-LP--GLS 469 (857)
Q Consensus 399 ~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp-----~~L~~L~l~~~~~~-~~~-l~--~l~ 469 (857)
+|+.|++++|.+....+..+..+++|+.|++++|.++.+|...+....+ ++|+.|+++.+.+. +|. +. .++
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 8999999998887544445667899999999999999888776542110 17888888666544 333 44 888
Q ss_pred CCcEEEeeCCCCccCCCcCCCCCCCCeeeCC------CCcce-eccccccCCCCCcEEecccccccccCCC-CCCCccee
Q 003011 470 SLTGLNLSFRNITEIPKDIGCLSSLRTLDLR------GNNFV-SLPASIKQFTQMEELILSNCNLLQSLPE-LPPSLILL 541 (857)
Q Consensus 470 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls------~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~-l~~sL~~L 541 (857)
+|+.|+|++|.++++|..+..+++|+.|+|+ +|.+. .+|..+..+++|+.|+|++|+. +.+|. +.++|+.|
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L 592 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVL 592 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEE
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEE
Confidence 9999999999998888888889999999984 45544 7888888899999999999887 67774 66888889
Q ss_pred ecccccCC
Q 003011 542 EARNCKQL 549 (857)
Q Consensus 542 ~i~~C~~L 549 (857)
++++|+-.
T Consensus 593 ~Ls~N~l~ 600 (636)
T 4eco_A 593 DIKDNPNI 600 (636)
T ss_dssp ECCSCTTC
T ss_pred ECcCCCCc
Confidence 98888643
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.3e-34 Score=339.71 Aligned_cols=327 Identities=17% Similarity=0.175 Sum_probs=282.6
Q ss_pred CCCCCCCCCCC-CCCCccEEEcCCCCCcc------------------cccCcC--CCCCccEEEccCCCCCccCC-CCCC
Q 003011 224 GYPLKTLPSNF-SPENLIELNLPYSKVEQ------------------MWEGKK--ESFKLKWIDLHHCQYLIRFP-DPLE 281 (857)
Q Consensus 224 ~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~lp-~l~~ 281 (857)
+|.++.+|..+ ++++|++|+|++|.++. +|..+. ++++|++|+|++|.+...+| .+.+
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 44565689888 99999999999999998 999999 99999999999999999999 6999
Q ss_pred CCccceeeccCCc-cCC-ccCCcccCC------CCCcEEeccCCCCCcccCC--CC-CCCCCcEEEcCCCCCCCccccc-
Q 003011 282 TPNLERICLSDCI-DLP-CIPSSIENF------NNLSILCLQGCESLRRFPS--NI-HFRSPITLDFSDCLNLTEFPQF- 349 (857)
Q Consensus 282 l~~L~~L~L~~~~-~~~-~~p~~i~~l------~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~~~~l~~~p~~- 349 (857)
+++|++|++++|. ..+ .+|..++.+ ++|++|++++|. ++.+|. .+ .+++|+.|++++|...+.+|.+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~ 350 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG 350 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCE
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchhhhC
Confidence 9999999999998 666 799999887 999999999965 448998 55 8999999999999766688832
Q ss_pred -ccCcceEEecCccceecCccccCCCc-ceEEEccCccccccccccccCCC--CCCEeeccCCCCCCccccccC------
Q 003011 350 -SGNIKQLYLCGTAIEEVPSSVECLTE-LAELYMRQCTRLKSISSRICKLK--SLHLLSLDDCCRLERFPEITE------ 419 (857)
Q Consensus 350 -~~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~Ls~~~~~~~~~~~l~------ 419 (857)
..+|+.|++++|.+..+|..+..+++ |++|++++|... .+|..+..++ +|+.|++++|.+.+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 351 SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 23789999999999999999999999 999999999877 8888877755 999999999999999998888
Q ss_pred -CCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-CCC--CC-------CCCCCcEEEeeCCCCccCCCcC
Q 003011 420 -TMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI-LPP--LP-------GLSSLTGLNLSFRNITEIPKDI 488 (857)
Q Consensus 420 -~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~~~--l~-------~l~~L~~L~Ls~n~l~~lp~~l 488 (857)
.+++|+.|++++|.++.+|..++. ..+.|+.|+++.+.+. +|. +. ++++|+.|+|++|.++.+|..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhh
Confidence 888999999999999999886543 2378999999666654 333 22 2339999999999999999988
Q ss_pred C--CCCCCCeeeCCCCcceeccccccCCCCCcEEecc------cccccccCCCC---CCCcceeecccccCCCcccCc
Q 003011 489 G--CLSSLRTLDLRGNNFVSLPASIKQFTQMEELILS------NCNLLQSLPEL---PPSLILLEARNCKQLQSLPEL 555 (857)
Q Consensus 489 ~--~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~------~c~~l~~lp~l---~~sL~~L~i~~C~~L~~l~~~ 555 (857)
. .+++|+.|+|++|.++.+|..+..+++|+.|+|+ +|+..+.+|.. .++|+.|++++|.- +.+|..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 7 9999999999999999999999999999999995 56667778743 47899999999965 777753
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.7e-33 Score=341.51 Aligned_cols=339 Identities=13% Similarity=0.141 Sum_probs=282.8
Q ss_pred cCCccccccCCeeEEEEeCCCCCC------------------CCCCC---CCCCccEEEcCCCCCc-ccccCcCCCCCcc
Q 003011 206 LHNGLDYLSDELRYLHWHGYPLKT------------------LPSNF---SPENLIELNLPYSKVE-QMWEGKKESFKLK 263 (857)
Q Consensus 206 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~---~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 263 (857)
+|..+..+ ++|++|++++|.+.. +|..+ ++++|++|+|++|.+. .+|..+.++++|+
T Consensus 440 IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 78888888 599999999999998 99886 6999999999999855 7899999999999
Q ss_pred EEEccCCC-CCc-cCC-C-------CCCCCccceeeccCCccCCccCC--cccCCCCCcEEeccCCCCCcccCCCCCCCC
Q 003011 264 WIDLHHCQ-YLI-RFP-D-------PLETPNLERICLSDCIDLPCIPS--SIENFNNLSILCLQGCESLRRFPSNIHFRS 331 (857)
Q Consensus 264 ~L~Ls~~~-~l~-~lp-~-------l~~l~~L~~L~L~~~~~~~~~p~--~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~ 331 (857)
+|+|++|+ +.. .+| . +..+++|++|+|++|... .+|. .++++++|+.|+|++|. ++.+|....+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCc
Confidence 99999998 554 566 2 345569999999999877 8999 99999999999999965 458994338999
Q ss_pred CcEEEcCCCCCCCccccccc---C-cceEEecCccceecCccccCCCc--ceEEEccCccccccccc---ccc--CCCCC
Q 003011 332 PITLDFSDCLNLTEFPQFSG---N-IKQLYLCGTAIEEVPSSVECLTE--LAELYMRQCTRLKSISS---RIC--KLKSL 400 (857)
Q Consensus 332 L~~L~Ls~~~~l~~~p~~~~---~-L~~L~L~~~~l~~lp~~l~~l~~--L~~L~L~~~~~l~~lp~---~l~--~l~~L 400 (857)
|+.|++++|... .+|..+. + |+.|++++|.+..+|..+..++. |+.|++++|.+.+.+|. .+. .+++|
T Consensus 597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 999999998755 7776543 5 99999999999999988877654 99999999998876653 222 34589
Q ss_pred CEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCc-----CCcceeeccccCCc-CCC-CC--CCCCC
Q 003011 401 HLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILP-----SSIANWSYGCRGLI-LPP-LP--GLSSL 471 (857)
Q Consensus 401 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp-----~~L~~L~l~~~~~~-~~~-l~--~l~~L 471 (857)
+.|++++|.+....+..+..+++|+.|++++|.++.+|...+....+ ++|+.|+++.+.+. +|. +. .+++|
T Consensus 676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 676 STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755 (876)
T ss_dssp EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTC
T ss_pred CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCc
Confidence 99999999888443344568999999999999999999877652110 28999999666554 343 54 89999
Q ss_pred cEEEeeCCCCccCCCcCCCCCCCCeeeCCC------Ccce-eccccccCCCCCcEEecccccccccCCC-CCCCcceeec
Q 003011 472 TGLNLSFRNITEIPKDIGCLSSLRTLDLRG------NNFV-SLPASIKQFTQMEELILSNCNLLQSLPE-LPPSLILLEA 543 (857)
Q Consensus 472 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~------n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~-l~~sL~~L~i 543 (857)
+.|+|++|.+.++|..+..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|+. +.+|. +.++|+.|++
T Consensus 756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdL 834 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDI 834 (876)
T ss_dssp CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEEC
T ss_pred CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEEC
Confidence 999999999999999999999999999977 5544 8899999999999999999998 78885 6789999999
Q ss_pred ccccCC
Q 003011 544 RNCKQL 549 (857)
Q Consensus 544 ~~C~~L 549 (857)
++|+-.
T Consensus 835 s~N~l~ 840 (876)
T 4ecn_A 835 ADNPNI 840 (876)
T ss_dssp CSCTTC
T ss_pred CCCCCC
Confidence 999743
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-34 Score=346.17 Aligned_cols=369 Identities=21% Similarity=0.229 Sum_probs=198.2
Q ss_pred cChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCC-CCCCCC-C-CCCccEEEcCCCCCc-
Q 003011 175 LSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLK-TLPSNF-S-PENLIELNLPYSKVE- 250 (857)
Q Consensus 175 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~-l~~L~~L~Ls~n~l~- 250 (857)
..+.+|.++++|++|++++|.+ ...+|.. .+ ++|++|++++|.+. .+|..+ . +++|++|+|++|.++
T Consensus 238 ~~~~~l~~l~~L~~L~Ls~n~l------~~~~~~~--~l-~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~ 308 (768)
T 3rgz_A 238 DFSRAISTCTELKLLNISSNQF------VGPIPPL--PL-KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308 (768)
T ss_dssp CHHHHTTTCSSCCEEECCSSCC------EESCCCC--CC-TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE
T ss_pred cccHHHhcCCCCCEEECCCCcc------cCccCcc--cc-CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC
Confidence 3467788888888888888873 2222222 22 34555555555443 444443 2 244444444444444
Q ss_pred ccccCcCCCCCccEEEccCCCCCccCC-C-CCCCCccceeeccCCccCC-------------------------------
Q 003011 251 QMWEGKKESFKLKWIDLHHCQYLIRFP-D-PLETPNLERICLSDCIDLP------------------------------- 297 (857)
Q Consensus 251 ~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~-l~~l~~L~~L~L~~~~~~~------------------------------- 297 (857)
.+|..+..+++|++|+|++|.+...+| . +.++++|++|++++|...+
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred ccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 334444444444444444444333344 1 4444444444444444333
Q ss_pred --------------------ccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccccc---cCc
Q 003011 298 --------------------CIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQFS---GNI 353 (857)
Q Consensus 298 --------------------~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~---~~L 353 (857)
.+|..++++++|+.|++++|.....+|..+ .+++|+.|++++|.....+|..+ .+|
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 344444444444444444433333333333 34444444444444333443322 244
Q ss_pred ceEEecCccce-ecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 354 KQLYLCGTAIE-EVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 354 ~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
+.|++++|.+. .+|..+..+++|+.|++++|...+.+|.+++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 45555555544 34444555555555555555554455555555555555555555555555555555555555555555
Q ss_pred ccc-cCCCCcccccCcCCccee----------------------------------------------ecccc---CCcC
Q 003011 433 TIQ-EQPSSNEDRILPSSIANW----------------------------------------------SYGCR---GLIL 462 (857)
Q Consensus 433 ~i~-~lp~~~~~~~lp~~L~~L----------------------------------------------~l~~~---~~~~ 462 (857)
.++ .+|..++.. ..+..+ ++..+ +...
T Consensus 549 ~l~g~ip~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 549 LFNGTIPAAMFKQ---SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp EEESBCCGGGGTT---TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred ccCCcCChHHhcc---cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 544 333332210 000000 00000 0011
Q ss_pred CCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcce-eccccccCCCCCcEEecccccccccCCCC---CCC
Q 003011 463 PPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSNCNLLQSLPEL---PPS 537 (857)
Q Consensus 463 ~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~~s 537 (857)
+.+..+++|+.|+|++|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+..+.+|.. .++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 225667788888888888886 8888888888888888888887 78888888888888888888888888853 357
Q ss_pred cceeecccccCCCcccCc
Q 003011 538 LILLEARNCKQLQSLPEL 555 (857)
Q Consensus 538 L~~L~i~~C~~L~~l~~~ 555 (857)
|+.|++++|+--..+|..
T Consensus 706 L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CSEEECCSSEEEEECCSS
T ss_pred CCEEECcCCcccccCCCc
Confidence 888888888766666654
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-33 Score=344.99 Aligned_cols=367 Identities=20% Similarity=0.197 Sum_probs=287.7
Q ss_pred cChHhhcCCCCccEEEEecCCccccccceeecCCc-cccccCCeeEEEEeCCCCC-CCCCCC-CCC-CccEEEcCCCCCc
Q 003011 175 LSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNG-LDYLSDELRYLHWHGYPLK-TLPSNF-SPE-NLIELNLPYSKVE 250 (857)
Q Consensus 175 l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~-~L~~L~Ls~n~l~ 250 (857)
..+..|.++++|+.|++++|. ....+|.. +..+ ++|++|++++|.+. .+|..+ .+. +|++|++++|.+.
T Consensus 309 ~~p~~~~~l~~L~~L~L~~n~------l~~~ip~~~l~~l-~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 309 AVPPFFGSCSLLESLALSSNN------FSGELPMDTLLKM-RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSE------EEEECCHHHHTTC-TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred ccchHHhcCCCccEEECCCCc------ccCcCCHHHHhcC-CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 334555666666666666555 33345544 4555 36677777666665 556665 444 6777777777665
Q ss_pred -ccccCcCC--CCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCC
Q 003011 251 -QMWEGKKE--SFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSN 326 (857)
Q Consensus 251 -~l~~~~~~--l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~ 326 (857)
.+|..+.. +++|++|++++|.+...+| .+.++++|++|++++|...+.+|..++.+++|+.|++++|...+.+|..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 34555544 7788888888888776777 6889999999999999999999999999999999999998877788887
Q ss_pred C-CCCCCcEEEcCCCCCCCccccccc---CcceEEecCccce-ecCccccCCCcceEEEccCccccccccccccCCCCCC
Q 003011 327 I-HFRSPITLDFSDCLNLTEFPQFSG---NIKQLYLCGTAIE-EVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLH 401 (857)
Q Consensus 327 ~-~l~~L~~L~Ls~~~~l~~~p~~~~---~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 401 (857)
+ .+++|+.|++++|.....+|..+. +|+.|++++|.+. .+|.+++.+++|+.|++++|...+.+|..+..+++|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 7 899999999999988878876554 7899999999999 6899999999999999999999999999999999999
Q ss_pred EeeccCCCCCCccccccCCCCCCCEEeccC----------------------------------------------Cccc
Q 003011 402 LLSLDDCCRLERFPEITETMECLEYFSLAS----------------------------------------------TTIQ 435 (857)
Q Consensus 402 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~----------------------------------------------n~i~ 435 (857)
.|++++|.+.+.+|..+.....+..+.+.. +.+.
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 999999999999998776655444333222 2222
Q ss_pred -cCCCCcccccCcCCcceeeccccCCc--CCC-CCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcce-eccc
Q 003011 436 -EQPSSNEDRILPSSIANWSYGCRGLI--LPP-LPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFV-SLPA 509 (857)
Q Consensus 436 -~lp~~~~~~~lp~~L~~L~l~~~~~~--~~~-l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~ 509 (857)
.+|..+.. + +.|+.|+++.+.+. +|. ++++++|+.|+|++|.+++ +|..++.+++|+.|+|++|+++ .+|.
T Consensus 622 g~~~~~~~~--l-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 622 GHTSPTFDN--N-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EECCCSCSS--S-BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ccCchhhhc--c-ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 12222221 2 67888999777653 333 8899999999999999996 9999999999999999999998 8999
Q ss_pred cccCCCCCcEEecccccccccCCCC--CCCcceeecccccCCCc
Q 003011 510 SIKQFTQMEELILSNCNLLQSLPEL--PPSLILLEARNCKQLQS 551 (857)
Q Consensus 510 ~l~~l~~L~~L~L~~c~~l~~lp~l--~~sL~~L~i~~C~~L~~ 551 (857)
.+..+++|++|+|++|+..+.+|+. +.++....+.+|+.|-.
T Consensus 699 ~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred HHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999963 34555566667765543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-32 Score=324.04 Aligned_cols=357 Identities=16% Similarity=0.180 Sum_probs=219.0
Q ss_pred cEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC-CC
Q 003011 159 SIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF-SP 236 (857)
Q Consensus 159 ~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l 236 (857)
.++.+ |++.+....+.+.+|.++++|++|++++|. .....|..+..+ .+|++|++++|.+..+ |..| .+
T Consensus 34 ~l~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 34 STECL--EFSFNVLPTIQNTTFSRLINLTFLDLTRCQ------IYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TCCEE--ECTTCCCSEECTTTSTTCTTCSEEECTTCC------CCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSC
T ss_pred cCcEE--EccCCccCcCChhHhccCccceEEECCCCc------cceeChhhccCc-cccCeeeCCCCcccccChhhhccc
Confidence 44444 455554456778899999999999999998 556678888888 5999999999999887 6667 99
Q ss_pred CCccEEEcCCCCCccc-ccCcCCCCCccEEEccCCCCCc-cCCCCCCCCccceeeccCCccCCccCCcccCCCCCc--EE
Q 003011 237 ENLIELNLPYSKVEQM-WEGKKESFKLKWIDLHHCQYLI-RFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLS--IL 312 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~-~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~--~L 312 (857)
++|++|++++|.++.+ +..+..+++|++|+|++|.+.. ..|.+..+++|++|++++|......|..++.+++|+ .|
T Consensus 105 ~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 105 KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp TTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred ccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 9999999999999988 5788999999999999999765 447777799999999999988877788899999999 89
Q ss_pred eccCCCCCcccCCCCCCCCCcEEEcCCCCCC-------------------------------------------------
Q 003011 313 CLQGCESLRRFPSNIHFRSPITLDFSDCLNL------------------------------------------------- 343 (857)
Q Consensus 313 ~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l------------------------------------------------- 343 (857)
++++|......|..+...+|+.|++++|..+
T Consensus 185 ~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n 264 (606)
T 3t6q_A 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC
T ss_pred ecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC
Confidence 9999765555555556666666666655411
Q ss_pred --Cccc-c---cccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcccc-
Q 003011 344 --TEFP-Q---FSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPE- 416 (857)
Q Consensus 344 --~~~p-~---~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~- 416 (857)
..++ . ...+|++|++++|.++++|..+..+++|++|++++|......|..+..+++|+.|++++|.....+|.
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 265 YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred ccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 1111 1 11244455555555555555555555555555555544444444444555555555555544433332
Q ss_pred ccCCCCCCCEEeccCCccccCC---CCcccccCcCCcceeeccccCCc-C--CCCCCCCCCcEEEeeCCCCccC-C-CcC
Q 003011 417 ITETMECLEYFSLASTTIQEQP---SSNEDRILPSSIANWSYGCRGLI-L--PPLPGLSSLTGLNLSFRNITEI-P-KDI 488 (857)
Q Consensus 417 ~l~~l~~L~~L~L~~n~i~~lp---~~~~~~~lp~~L~~L~l~~~~~~-~--~~l~~l~~L~~L~Ls~n~l~~l-p-~~l 488 (857)
.+..+++|+.|++++|.++..+ ..+.. + ++|+.|+++.+... . ..+..+++|+.|++++|.+... | ..+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRN--L-SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTT--C-TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred hhhccCcCCEEECCCCccccccCcchhccc--C-CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 2444455555555554444331 11111 1 34444444333221 1 1144444444444444444431 1 224
Q ss_pred CCCCCCCeeeCCCCccee-ccccccCCCCCcEEecccccc
Q 003011 489 GCLSSLRTLDLRGNNFVS-LPASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 489 ~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~c~~ 527 (857)
..+++|+.|++++|.+.. .|..+..+++|++|++++|+.
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 444444444444444432 233344444444444444443
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-32 Score=322.46 Aligned_cols=373 Identities=18% Similarity=0.145 Sum_probs=238.3
Q ss_pred CCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC-CCCCccEEEcC
Q 003011 168 SKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF-SPENLIELNLP 245 (857)
Q Consensus 168 ~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~Ls 245 (857)
+.+....+.+.+|.++++|++|++++|. .....|..+..+ ++|++|++++|.++.+ |..| ++++|++|+|+
T Consensus 40 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 40 SFNPLKILKSYSFSNFSELQWLDLSRCE------IETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CCCCcCEeChhhccCCccCcEEeCCCCc------ccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 3333344555667777777777777666 333445556565 4677777777766666 5555 66677777777
Q ss_pred CCCCcccc-cCcCCCCCccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccCCccc------------------
Q 003011 246 YSKVEQMW-EGKKESFKLKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIPSSIE------------------ 304 (857)
Q Consensus 246 ~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~------------------ 304 (857)
+|.++.++ ..++.+++|++|+|++|.+.. .+| .+.++++|++|++++|...+..|..++
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~ 192 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC
Confidence 77666655 456666666677766666543 345 466666666666666654433332222
Q ss_pred --------------------------------------------------------------------------------
Q 003011 305 -------------------------------------------------------------------------------- 304 (857)
Q Consensus 305 -------------------------------------------------------------------------------- 304 (857)
T Consensus 193 l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 272 (606)
T 3vq2_A 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272 (606)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCT
T ss_pred cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccc
Confidence
Q ss_pred ----------CCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCccccc-ccCcceEEecCccceecCccccCC
Q 003011 305 ----------NFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQF-SGNIKQLYLCGTAIEEVPSSVECL 373 (857)
Q Consensus 305 ----------~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~-~~~L~~L~L~~~~l~~lp~~l~~l 373 (857)
.+++|+.|++++| .+..+|....+++|+.|++++|.. +.+|.. ..+|+.|++++|....-. .+..+
T Consensus 273 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~-~~~~l 349 (606)
T 3vq2_A 273 DFSDDIVKFHCLANVSAMSLAGV-SIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF-KKVAL 349 (606)
T ss_dssp TCCGGGGSCGGGTTCSEEEEESC-CCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC-CCCCC
T ss_pred cccccccccccCCCCCEEEecCc-cchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch-hhccC
Confidence 2233333333332 223344222567888888888865 666653 337778888887433321 45677
Q ss_pred CcceEEEccCcccccc--ccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC--CcccccCcCC
Q 003011 374 TELAELYMRQCTRLKS--ISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS--SNEDRILPSS 449 (857)
Q Consensus 374 ~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~--~~~~~~lp~~ 449 (857)
++|++|++++|...+. .|..+..+++|+.|++++|.... +|..+..+++|+.|++++|.+...+. .+.. + ++
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~--l-~~ 425 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS--L-EK 425 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT--C-TT
T ss_pred CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc--c-cc
Confidence 8888888888766544 36667778888888888876443 55677778888888888887776654 2221 2 67
Q ss_pred cceeeccccCCcC--C-CCCCCCCCcEEEeeCCCCcc--CCCcCCCCCCCCeeeCCCCcceec-cccccCCCCCcEEecc
Q 003011 450 IANWSYGCRGLIL--P-PLPGLSSLTGLNLSFRNITE--IPKDIGCLSSLRTLDLRGNNFVSL-PASIKQFTQMEELILS 523 (857)
Q Consensus 450 L~~L~l~~~~~~~--~-~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 523 (857)
|+.|+++.+.... + .+.++++|++|++++|.+.+ +|..++.+++|+.|+|++|.++.+ |..+..+++|++|+|+
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 7788875554422 2 27777888888888888776 677778888888888888887744 4567778888888888
Q ss_pred cccccccCCCC---CCCcceeecccccCCCcccCc
Q 003011 524 NCNLLQSLPEL---PPSLILLEARNCKQLQSLPEL 555 (857)
Q Consensus 524 ~c~~l~~lp~l---~~sL~~L~i~~C~~L~~l~~~ 555 (857)
+|+.....|.. .++|+.|++++|. ++.+|..
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 88776665532 3577888888774 6666653
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.3e-32 Score=319.35 Aligned_cols=373 Identities=16% Similarity=0.128 Sum_probs=239.4
Q ss_pred CcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCC-C-C
Q 003011 158 DSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSN-F-S 235 (857)
Q Consensus 158 ~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~ 235 (857)
..++.+.+..+. ...+.+.+|.++++|++|++++|. .....|..+..+ .+|++|++++|.+..+|.. | .
T Consensus 26 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~------i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 96 (549)
T 2z81_A 26 AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSSR------INTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGP 96 (549)
T ss_dssp TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTSC------CCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTT
T ss_pred CCccEEECcCCc--cCccChhhhhcCCcccEEECCCCC------cCccChhhcccc-ccCCEEECCCCccCccCHHHhcc
Confidence 355655555444 345567789999999999999998 455566788888 5999999999999999775 5 8
Q ss_pred CCCccEEEcCCCCCcc--cccCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcE
Q 003011 236 PENLIELNLPYSKVEQ--MWEGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSI 311 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~ 311 (857)
+++|++|++++|.++. .|..+..+++|++|++++|.....+| .+.++++|++|++++|...+..|..++.+++|++
T Consensus 97 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 97 LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp CTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence 9999999999999985 46788999999999999998777776 6899999999999999988888888887777777
Q ss_pred EeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCCc------cc------------------------------------
Q 003011 312 LCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLTE------FP------------------------------------ 347 (857)
Q Consensus 312 L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~~------~p------------------------------------ 347 (857)
|++++|. ...+|... .+++|+.|++++|...+. +.
T Consensus 177 L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 177 LTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp EEEECSB-STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred EecccCc-ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 7776643 22222221 344455555444432210 00
Q ss_pred ---------------------------------------------------ccccCcceEEecCccceecCccc-cCCCc
Q 003011 348 ---------------------------------------------------QFSGNIKQLYLCGTAIEEVPSSV-ECLTE 375 (857)
Q Consensus 348 ---------------------------------------------------~~~~~L~~L~L~~~~l~~lp~~l-~~l~~ 375 (857)
...++|+.|++++|.+..+|..+ ..+++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 01124555555555555555554 35666
Q ss_pred ceEEEccCcccccccc---ccccCCCCCCEeeccCCCCCCccc--cccCCCCCCCEEeccCCccccCCCCcccccCcCCc
Q 003011 376 LAELYMRQCTRLKSIS---SRICKLKSLHLLSLDDCCRLERFP--EITETMECLEYFSLASTTIQEQPSSNEDRILPSSI 450 (857)
Q Consensus 376 L~~L~L~~~~~l~~lp---~~l~~l~~L~~L~Ls~~~~~~~~~--~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L 450 (857)
|++|++++|...+.+| ..++.+++|+.|++++|.+....+ ..+..+++|+.|++++|.++.+|..+.. +++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~---~~~L 412 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW---PEKM 412 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC---CTTC
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc---cccc
Confidence 6666666666655443 225556666666666665544322 3456666666666666666666654432 2556
Q ss_pred ceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEeccccccccc
Q 003011 451 ANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQS 530 (857)
Q Consensus 451 ~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~ 530 (857)
+.|+++.+.+...+-.-.++|+.|++++|++++++ ..+++|+.|+|++|+++.+|. ...+++|+.|+|++|+....
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence 66666444432211111245666666666666543 355666666666666666664 34566666666666655544
Q ss_pred CCC---CCCCcceeeccccc
Q 003011 531 LPE---LPPSLILLEARNCK 547 (857)
Q Consensus 531 lp~---l~~sL~~L~i~~C~ 547 (857)
.|. -.++|+.|++++|+
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSC
T ss_pred CHHHHhcCcccCEEEecCCC
Confidence 443 12455555555554
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.4e-32 Score=331.40 Aligned_cols=325 Identities=17% Similarity=0.185 Sum_probs=274.0
Q ss_pred CCCCCCCCCC-CCCCccEEEcCCCCCcc------------------cccCcC--CCCCccEEEccCCCCCccCC-CCCCC
Q 003011 225 YPLKTLPSNF-SPENLIELNLPYSKVEQ------------------MWEGKK--ESFKLKWIDLHHCQYLIRFP-DPLET 282 (857)
Q Consensus 225 ~~l~~lp~~~-~l~~L~~L~Ls~n~l~~------------------l~~~~~--~l~~L~~L~Ls~~~~l~~lp-~l~~l 282 (857)
|.++.+|..+ ++++|++|+|++|.++. +|..+. ++++|++|+|++|.+...+| .+.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555589888 99999999999999998 999988 99999999999999999999 69999
Q ss_pred CccceeeccCCc-cCC-ccCCcccCCC-------CCcEEeccCCCCCcccCC--CC-CCCCCcEEEcCCCCCCCccccc-
Q 003011 283 PNLERICLSDCI-DLP-CIPSSIENFN-------NLSILCLQGCESLRRFPS--NI-HFRSPITLDFSDCLNLTEFPQF- 349 (857)
Q Consensus 283 ~~L~~L~L~~~~-~~~-~~p~~i~~l~-------~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~~~~l~~~p~~- 349 (857)
++|++|+|++|. ..+ .+|..++.++ +|+.|++++|. +..+|. .+ .+++|+.|++++|... .+|.+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cchhhc
Confidence 999999999998 666 7888777666 99999999965 448998 55 8999999999998755 78733
Q ss_pred -ccCcceEEecCccceecCccccCCCc-ceEEEccCccccccccccccCCCC--CCEeeccCCCCCCccccc---cC--C
Q 003011 350 -SGNIKQLYLCGTAIEEVPSSVECLTE-LAELYMRQCTRLKSISSRICKLKS--LHLLSLDDCCRLERFPEI---TE--T 420 (857)
Q Consensus 350 -~~~L~~L~L~~~~l~~lp~~l~~l~~-L~~L~L~~~~~l~~lp~~l~~l~~--L~~L~Ls~~~~~~~~~~~---l~--~ 420 (857)
..+|+.|++++|.+..+|..+..+++ |+.|++++|... .+|..+..++. |+.|++++|.+.+.+|.. +. .
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 23788999999999999999999999 999999999866 88888877654 999999999988766543 22 3
Q ss_pred CCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-CCC--CC-------CCCCCcEEEeeCCCCccCCCcCC-
Q 003011 421 MECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI-LPP--LP-------GLSSLTGLNLSFRNITEIPKDIG- 489 (857)
Q Consensus 421 l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~~~--l~-------~l~~L~~L~Ls~n~l~~lp~~l~- 489 (857)
+++|+.|++++|.++.+|..++. -.++|+.|+++.+.+. +|. +. ++++|+.|+|++|+++.+|..+.
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~--~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~ 749 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFA--TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHH--TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred CCCcCEEEccCCcCCccCHHHHc--cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence 45899999999999998876642 2378999999666543 333 22 23499999999999999999887
Q ss_pred -CCCCCCeeeCCCCcceeccccccCCCCCcEEeccc------ccccccCCCC---CCCcceeecccccCCCcccCc
Q 003011 490 -CLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSN------CNLLQSLPEL---PPSLILLEARNCKQLQSLPEL 555 (857)
Q Consensus 490 -~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~------c~~l~~lp~l---~~sL~~L~i~~C~~L~~l~~~ 555 (857)
.+++|+.|+|++|.++.+|..+..+++|+.|+|++ |.....+|.. .++|+.|++++|.- +.+|..
T Consensus 750 ~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 99999999999999999999999999999999977 6667777743 47899999999965 777763
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.98 E-value=1.6e-30 Score=308.91 Aligned_cols=375 Identities=17% Similarity=0.164 Sum_probs=200.1
Q ss_pred cEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC-CC
Q 003011 159 SIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF-SP 236 (857)
Q Consensus 159 ~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l 236 (857)
.++.+ +++.+....+.+.+|.++++|++|++++|. .....|..+..+ ++|++|++++|.+..+ |..+ .+
T Consensus 58 ~L~~L--~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l-~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 58 NLTFL--DLTRCQIYWIHEDTFQSQHRLDTLVLTANP------LIFMAETALSGP-KALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TCSEE--ECTTCCCCEECTTTTTTCTTCCEEECTTCC------CSEECTTTTSSC-TTCCEEECTTSCCSCGGGSCCTTC
T ss_pred cceEE--ECCCCccceeChhhccCccccCeeeCCCCc------ccccChhhhccc-ccccEeeccccCcccCCcchhccC
Confidence 34444 344443445667778888888888888777 444556666666 4777777777777776 4445 67
Q ss_pred CCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccc--eeeccCCccCCccCCcccCC------
Q 003011 237 ENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLE--RICLSDCIDLPCIPSSIENF------ 306 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~--~L~L~~~~~~~~~p~~i~~l------ 306 (857)
++|++|++++|.++.++ ..+..+++|++|++++|.+....| .+..+++|+ +|++++|...+..|..+...
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 77777777777777652 233347777777777776543333 355555555 55666554443333222110
Q ss_pred ---------------------------------------------CCCcEEeccCCCCCcccCCC-C-CCCCCcEEEcCC
Q 003011 307 ---------------------------------------------NNLSILCLQGCESLRRFPSN-I-HFRSPITLDFSD 339 (857)
Q Consensus 307 ---------------------------------------------~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~ 339 (857)
.+|+.|++++| .++.++.. + .+++|+.|++++
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTA 287 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTT
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccC
Confidence 03444444443 22333332 2 455666666665
Q ss_pred CCCCCcccccc---cCcceEEecCccceec-CccccCCCcceEEEccCccccccccc-cccCCCCCCEeeccCCCCCCcc
Q 003011 340 CLNLTEFPQFS---GNIKQLYLCGTAIEEV-PSSVECLTELAELYMRQCTRLKSISS-RICKLKSLHLLSLDDCCRLERF 414 (857)
Q Consensus 340 ~~~l~~~p~~~---~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~ 414 (857)
|. +..+|..+ .+|++|++++|.+..+ |..+..+++|++|++++|...+.+|. .+..+++|+.|++++|.+.+..
T Consensus 288 n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 288 TH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred Cc-cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 53 33444433 2455666666665554 33455556666666666555544433 2555556666666655554433
Q ss_pred --ccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcC---CC-CCCCCCCcEEEeeCCCCcc-CCCc
Q 003011 415 --PEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLIL---PP-LPGLSSLTGLNLSFRNITE-IPKD 487 (857)
Q Consensus 415 --~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~---~~-l~~l~~L~~L~Ls~n~l~~-lp~~ 487 (857)
+..+..+++|+.|++++|.++.++..... -.++|+.|+++.+.... +. +.++++|+.|++++|.+.. .|..
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 44555555566666655555544322211 12455555554443221 11 4555555555555555555 3444
Q ss_pred CCCCCCCCeeeCCCCccee--cc--ccccCCCCCcEEecccccccccCCC---CCCCcceeecccc
Q 003011 488 IGCLSSLRTLDLRGNNFVS--LP--ASIKQFTQMEELILSNCNLLQSLPE---LPPSLILLEARNC 546 (857)
Q Consensus 488 l~~l~~L~~L~Ls~n~l~~--lp--~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~C 546 (857)
++.+++|+.|++++|.+.. +| ..+..+++|+.|++++|+.....|. -.++|+.|++++|
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 5555555555555555542 11 3355555555555555554444332 1245555555555
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=326.45 Aligned_cols=414 Identities=19% Similarity=0.174 Sum_probs=244.5
Q ss_pred cCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeec-CCccccccCCeeEEEEeCCCCCCC-CCCC
Q 003011 157 TDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHL-HNGLDYLSDELRYLHWHGYPLKTL-PSNF 234 (857)
Q Consensus 157 ~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~ 234 (857)
...++.+.+..+.+ ..+.+.+|.++++|++|++++|. ....+ |..+..+ ++|++|++++|.+..+ |..|
T Consensus 23 p~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~ 93 (844)
T 3j0a_A 23 LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAF 93 (844)
T ss_dssp CTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSS
T ss_pred CCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCC------CccccCHHHhcCC-CCCCEEECCCCcCcccCHhHc
Confidence 34566666665544 34566788999999999998885 33444 6778787 5899999999998877 6677
Q ss_pred -CCCCccEEEcCCCCCcc-cccC--cCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCC--
Q 003011 235 -SPENLIELNLPYSKVEQ-MWEG--KKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENF-- 306 (857)
Q Consensus 235 -~l~~L~~L~Ls~n~l~~-l~~~--~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l-- 306 (857)
++++|++|+|++|.++. +|.. +.++++|++|+|++|.+....+ .++++++|++|+|++|...+..+..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 88999999999998885 4544 7889999999999988765544 47888999999999888777667666655
Q ss_pred CCCcEEeccCCCCCcccCCCC-CCC------CCcEEEcCCC---------------------------------------
Q 003011 307 NNLSILCLQGCESLRRFPSNI-HFR------SPITLDFSDC--------------------------------------- 340 (857)
Q Consensus 307 ~~L~~L~L~~c~~l~~lp~~~-~l~------~L~~L~Ls~~--------------------------------------- 340 (857)
++|+.|++++|......|..+ .+. +|+.|++++|
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~ 253 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSST
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccC
Confidence 666666666654444333322 111 2555555554
Q ss_pred -----------------------CCCCccccc---ccCcceEEecCccceec-CccccCCCcceEEEccCcccccccccc
Q 003011 341 -----------------------LNLTEFPQF---SGNIKQLYLCGTAIEEV-PSSVECLTELAELYMRQCTRLKSISSR 393 (857)
Q Consensus 341 -----------------------~~l~~~p~~---~~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~ 393 (857)
......+.. ..+|+.|++++|.+..+ |..+..+++|++|++++|...+..|..
T Consensus 254 ~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 254 DPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred CCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 222221211 12444455555554443 223444555555555555444444444
Q ss_pred ccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-CC---------
Q 003011 394 ICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI-LP--------- 463 (857)
Q Consensus 394 l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~~--------- 463 (857)
+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.++. .++|+.|+++.+.+. +|
T Consensus 334 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-------~~~L~~L~l~~N~l~~l~~~~~~l~~L 406 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF-------IPSIPDIFLSGNKLVTLPKINLTANLI 406 (844)
T ss_dssp CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS-------CCSCSEEEEESCCCCCCCCCCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC-------CCCcchhccCCCCccccccccccccee
Confidence 5555555555555554444444445555555555555555444332 123333333222111 11
Q ss_pred -----------C---CCCCCCCcEEEeeCCCCccCCC--cCCCCCCCCeeeCCCCcceec------cccccCCCCCcEEe
Q 003011 464 -----------P---LPGLSSLTGLNLSFRNITEIPK--DIGCLSSLRTLDLRGNNFVSL------PASIKQFTQMEELI 521 (857)
Q Consensus 464 -----------~---l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~l------p~~l~~l~~L~~L~ 521 (857)
. +.++++|+.|+|++|+++.++. .+..+++|+.|+|++|.++.+ |..+..+++|+.|+
T Consensus 407 ~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~ 486 (844)
T 3j0a_A 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486 (844)
T ss_dssp ECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCC
T ss_pred ecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEE
Confidence 0 2367777888888887776432 345567777777777776522 23466677778888
Q ss_pred cccccccccCCCC---CCCcceeecccccCCCcccCc--chhhhhhhhhhhhhhccccccccCCceEEEecc
Q 003011 522 LSNCNLLQSLPEL---PPSLILLEARNCKQLQSLPEL--SSYLEELDASKLETLSEYSDVFAQPRITFTFTN 588 (857)
Q Consensus 522 L~~c~~l~~lp~l---~~sL~~L~i~~C~~L~~l~~~--~~~l~~L~~~~l~~L~~~~~~~~~~~~~l~~~n 588 (857)
|++|......|.. .++|+.|+++++ .|+.++.. +..++.|+++.+.-.......+ ..+..+.+.+
T Consensus 487 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~-~~L~~l~l~~ 556 (844)
T 3j0a_A 487 LNHNYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRNQLLAPNPDVF-VSLSVLDITH 556 (844)
T ss_dssp CCHHHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEECCCCCCSCCC-SSCCEEEEEE
T ss_pred CCCCcccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEECCCCcCCCCChhHh-CCcCEEEecC
Confidence 8877666554432 367777777777 45555432 2345555555543322222222 2344566554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=4.7e-31 Score=310.99 Aligned_cols=379 Identities=21% Similarity=0.215 Sum_probs=280.5
Q ss_pred cEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCC-CCC-CC
Q 003011 159 SIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLP-SNF-SP 236 (857)
Q Consensus 159 ~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~l 236 (857)
.++.+ |++.+....+.+.+|.++++|++|++++|. .....+..+..+ ++|++|++++|.++.+| ..| .+
T Consensus 29 ~l~~L--~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~------i~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 29 STKNL--DLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCCEE--ECCSCCCCEECTTTTTTCSSCCEEECTTCC------CCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTC
T ss_pred cccEE--EccCCccCccChhHhhCCCCceEEECCCCc------CCccCcccccCc-hhCCEEeCcCCcCCccCHhhhcCc
Confidence 45555 444444455677889999999999999987 444456677777 58999999999998886 456 89
Q ss_pred CCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccCCcccCCCCC----
Q 003011 237 ENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNL---- 309 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L---- 309 (857)
++|++|++++|.++.++. .++.+++|++|++++|.+.. .+| .+.++++|++|++++|......+..++.+++|
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhh
Confidence 999999999999998875 68899999999999998665 466 68889999999999988777777778888877
Q ss_pred cEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCC----------------------------------------------
Q 003011 310 SILCLQGCESLRRFPSNIHFRSPITLDFSDCLNL---------------------------------------------- 343 (857)
Q Consensus 310 ~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l---------------------------------------------- 343 (857)
+.|++++|......|..+...+|+.|++++|..-
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred hhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 7888887544333333333335666655554100
Q ss_pred ------------Cccccc---ccCcceEEecCccceecCccccCCCcceEEEccCcc---------------------cc
Q 003011 344 ------------TEFPQF---SGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCT---------------------RL 387 (857)
Q Consensus 344 ------------~~~p~~---~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~---------------------~l 387 (857)
...|.. ..+|+.|+++++.+.++|..+..+ +|+.|++++|. ..
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~ 338 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSC
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccc
Confidence 001111 235556666666666666555544 55555555444 33
Q ss_pred ccccccccCCCCCCEeeccCCCCCCcc--ccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-C-C
Q 003011 388 KSISSRICKLKSLHLLSLDDCCRLERF--PEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI-L-P 463 (857)
Q Consensus 388 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~--~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~-~ 463 (857)
...+. ..+++|+.|++++|.+.... +..+..+++|+.|++++|.++.+|..+.. + ++|+.|+++.+... . +
T Consensus 339 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--l-~~L~~L~l~~n~l~~~~~ 413 (570)
T 2z63_A 339 NAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG--L-EQLEHLDFQHSNLKQMSE 413 (570)
T ss_dssp CBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET--C-TTCCEEECTTSEEESCTT
T ss_pred ccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc--c-CCCCEEEccCCccccccc
Confidence 33332 57889999999999877543 67788999999999999999887765433 3 78999999665432 2 2
Q ss_pred --CCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcce--eccccccCCCCCcEEecccccccccCCCC---C
Q 003011 464 --PLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFV--SLPASIKQFTQMEELILSNCNLLQSLPEL---P 535 (857)
Q Consensus 464 --~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~lp~l---~ 535 (857)
.+.++++|++|++++|.+.+ .|..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++|+.....|.. .
T Consensus 414 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc
Confidence 37889999999999999988 6778899999999999999986 68989999999999999999887766643 4
Q ss_pred CCcceeecccccCCCccc
Q 003011 536 PSLILLEARNCKQLQSLP 553 (857)
Q Consensus 536 ~sL~~L~i~~C~~L~~l~ 553 (857)
++|+.|++++| .++.++
T Consensus 494 ~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 494 SSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTCCEEECCSS-CCSCCC
T ss_pred cCCCEEeCCCC-cCCCCC
Confidence 78999999998 455554
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.3e-30 Score=309.51 Aligned_cols=378 Identities=16% Similarity=0.122 Sum_probs=298.1
Q ss_pred cCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCC-CCC-
Q 003011 157 TDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLP-SNF- 234 (857)
Q Consensus 157 ~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~- 234 (857)
...++.+.+. .+....+.+.+|.++++|++|++++|. .....|..+..+ .+|++|++++|.+..+| ..+
T Consensus 55 l~~L~~L~Ls--~n~l~~i~~~~~~~l~~L~~L~Ls~n~------l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~ 125 (606)
T 3vq2_A 55 FSELQWLDLS--RCEIETIEDKAWHGLHHLSNLILTGNP------IQSFSPGSFSGL-TSLENLVAVETKLASLESFPIG 125 (606)
T ss_dssp CTTCCEEECT--TCCCCEECTTTTTTCTTCCEEECTTCC------CCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCT
T ss_pred CccCcEEeCC--CCcccccCHHHhhchhhcCEeECCCCc------ccccChhhcCCc-ccCCEEEccCCccccccccccC
Confidence 3455555444 444455677889999999999999987 344457788888 58999999999998886 455
Q ss_pred CCCCccEEEcCCCCCc--ccccCcCCCCCccEEEccCCCCCccCC-CCC---------------------------CCCc
Q 003011 235 SPENLIELNLPYSKVE--QMWEGKKESFKLKWIDLHHCQYLIRFP-DPL---------------------------ETPN 284 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~---------------------------~l~~ 284 (857)
++.+|++|++++|.++ .+|..++++++|++|+|++|.+....| .+. ...+
T Consensus 126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~ 205 (606)
T 3vq2_A 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCce
Confidence 8899999999999887 478888889999999888887543322 111 1124
Q ss_pred cceeeccCCcc---------------------------------------------------------------------
Q 003011 285 LERICLSDCID--------------------------------------------------------------------- 295 (857)
Q Consensus 285 L~~L~L~~~~~--------------------------------------------------------------------- 295 (857)
|++|++++|..
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 55555554422
Q ss_pred -----------CCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccc-cccCcceEEecCccc
Q 003011 296 -----------LPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQ-FSGNIKQLYLCGTAI 363 (857)
Q Consensus 296 -----------~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~-~~~~L~~L~L~~~~l 363 (857)
...+| .+..+++|+.|++++|.. +.+|.. .+++|+.|++++|.....++. ...+|+.|++++|.+
T Consensus 286 ~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 362 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNAL 362 (606)
T ss_dssp TCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCE
T ss_pred CCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCcc
Confidence 12344 788899999999999766 889965 999999999999976665532 345899999999999
Q ss_pred eec---CccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccc-cccCCCCCCCEEeccCCccccCC-
Q 003011 364 EEV---PSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFP-EITETMECLEYFSLASTTIQEQP- 438 (857)
Q Consensus 364 ~~l---p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~lp- 438 (857)
+.+ |..+..+++|++|++++|... .+|..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.++..+
T Consensus 363 ~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 441 (606)
T 3vq2_A 363 SFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441 (606)
T ss_dssp EEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT
T ss_pred CCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch
Confidence 876 778899999999999999754 467889999999999999999888877 68899999999999999998654
Q ss_pred CCcccccCcCCcceeeccccCCc---CCC-CCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcceec-ccccc
Q 003011 439 SSNEDRILPSSIANWSYGCRGLI---LPP-LPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFVSL-PASIK 512 (857)
Q Consensus 439 ~~~~~~~lp~~L~~L~l~~~~~~---~~~-l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~ 512 (857)
..+.. + ++|+.|+++.+... .|. +.++++|+.|+|++|.+++ .|..++.+++|+.|+|++|.++.+ |..+.
T Consensus 442 ~~~~~--l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 518 (606)
T 3vq2_A 442 GIFLG--L-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518 (606)
T ss_dssp TTTTT--C-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred hhhcC--C-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence 43333 3 78999999766543 343 8999999999999999999 567899999999999999998855 78899
Q ss_pred CCCCCcEEecccccccccCCC----CCCCcceeecccccCCCc
Q 003011 513 QFTQMEELILSNCNLLQSLPE----LPPSLILLEARNCKQLQS 551 (857)
Q Consensus 513 ~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~C~~L~~ 551 (857)
.+++|+.|+|++|+.. .+|. +|.+|+.|++++++-...
T Consensus 519 ~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 519 QLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999999999855 6664 445799999999875543
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.7e-31 Score=305.65 Aligned_cols=370 Identities=15% Similarity=0.162 Sum_probs=250.2
Q ss_pred CcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCC
Q 003011 158 DSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPE 237 (857)
Q Consensus 158 ~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~ 237 (857)
..++.+.+. .+....+.+.+|.++++|++|++++|. +....|..+..+ ++|++|++++|.++.+|.. .++
T Consensus 21 ~~L~~L~Ls--~n~i~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~ 90 (520)
T 2z7x_B 21 QKTTILNIS--QNYISELWTSDILSLSKLRILIISHNR------IQYLDISVFKFN-QELEYLDLSHNKLVKISCH-PTV 90 (520)
T ss_dssp TTCSEEECC--SSCCCCCCHHHHTTCTTCCEEECCSSC------CCEEEGGGGTTC-TTCCEEECCSSCCCEEECC-CCC
T ss_pred ccccEEECC--CCcccccChhhccccccccEEecCCCc------cCCcChHHhhcc-cCCCEEecCCCceeecCcc-ccC
Confidence 345555444 444456678899999999999999998 455667888888 5999999999999999988 899
Q ss_pred CccEEEcCCCCCcc--cccCcCCCCCccEEEccCCCCCccCCCCCCCCcc--ceeeccCCcc--CCccCCcccC------
Q 003011 238 NLIELNLPYSKVEQ--MWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNL--ERICLSDCID--LPCIPSSIEN------ 305 (857)
Q Consensus 238 ~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L--~~L~L~~~~~--~~~~p~~i~~------ 305 (857)
+|++|+|++|.++. +|..++.+++|++|+|++|.+.. ..+..+++| ++|++++|.. .+..|..+..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 99999999999986 56889999999999999998654 346667777 9999998877 5555555544
Q ss_pred --------------------CCCCcEEeccCCC-------CCcccCC---------------------------CCCCCC
Q 003011 306 --------------------FNNLSILCLQGCE-------SLRRFPS---------------------------NIHFRS 331 (857)
Q Consensus 306 --------------------l~~L~~L~L~~c~-------~l~~lp~---------------------------~~~l~~ 331 (857)
+++|+.|++++|. ..+.+|. ....++
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~ 248 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence 4556666655543 0001110 001235
Q ss_pred CcEEEcCCCCCCCcccccc-----c---CcceEEecCccceecC-ccccCC---CcceEEEccCccccccccccccCCCC
Q 003011 332 PITLDFSDCLNLTEFPQFS-----G---NIKQLYLCGTAIEEVP-SSVECL---TELAELYMRQCTRLKSISSRICKLKS 399 (857)
Q Consensus 332 L~~L~Ls~~~~l~~~p~~~-----~---~L~~L~L~~~~l~~lp-~~l~~l---~~L~~L~L~~~~~l~~lp~~l~~l~~ 399 (857)
|++|++++|...+.+|... + +|+.+++++|.+ .+| ..+..+ .+|+.|++++|...... ....+++
T Consensus 249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~ 325 (520)
T 2z7x_B 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISP 325 (520)
T ss_dssp CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred ccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCc
Confidence 6666666665444555433 2 455666666666 555 233333 45666666666543221 0145566
Q ss_pred CCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC---CcccccCcCCcceeeccccCCc--CC--CCCCCCCCc
Q 003011 400 LHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS---SNEDRILPSSIANWSYGCRGLI--LP--PLPGLSSLT 472 (857)
Q Consensus 400 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~---~~~~~~lp~~L~~L~l~~~~~~--~~--~l~~l~~L~ 472 (857)
|+.|++++|.+.+..|..++.+++|+.|++++|.++.++. .+.. + ++|+.|+++.+.+. +| .+..+++|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~--l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ--M-KSLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT--C-TTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh--C-CCCCEEECCCCcCCcccccchhccCccCC
Confidence 6666666666666566666666666666666666654321 1211 2 55666666444433 22 266788999
Q ss_pred EEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCCCC----CCCcceeeccccc
Q 003011 473 GLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLPEL----PPSLILLEARNCK 547 (857)
Q Consensus 473 ~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~i~~C~ 547 (857)
.|++++|.+++ +|..+. ++|+.|+|++|.++.+|..+..+++|+.|+|++|+.. .+|.. .++|+.|++++++
T Consensus 403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 99999999876 555543 7899999999999999988889999999999998765 56642 3578888888876
Q ss_pred C
Q 003011 548 Q 548 (857)
Q Consensus 548 ~ 548 (857)
-
T Consensus 480 ~ 480 (520)
T 2z7x_B 480 W 480 (520)
T ss_dssp B
T ss_pred C
Confidence 3
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=2.9e-29 Score=302.17 Aligned_cols=378 Identities=20% Similarity=0.156 Sum_probs=264.7
Q ss_pred CcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCC-C-C
Q 003011 158 DSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSN-F-S 235 (857)
Q Consensus 158 ~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~ 235 (857)
..++.+.+..+ ....+.+.+|.++++|++|++++|. .....|..+..+ ++|++|++++|.+..+|.. | .
T Consensus 25 ~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~------l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 25 TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNT------ISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSC------CCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCc------cCccCHHHHhcc-cCcCEEECCCCccCccChhhhcc
Confidence 34555555444 3445677889999999999999988 444556777788 5999999999999999874 6 8
Q ss_pred CCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCccc--CCCCCcE
Q 003011 236 PENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIE--NFNNLSI 311 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~--~l~~L~~ 311 (857)
+++|++|+|++|.++.++ ..+..+++|++|+|++|.+....| .+.++++|++|++++|...+..+..++ .+++|+.
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 175 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence 999999999999999887 568999999999999998776666 588999999999999887766665554 5689999
Q ss_pred EeccCCCCCcccCCCC-C---------------------------CCCCcEEEcCCCCCCCccccccc-----CcceEEe
Q 003011 312 LCLQGCESLRRFPSNI-H---------------------------FRSPITLDFSDCLNLTEFPQFSG-----NIKQLYL 358 (857)
Q Consensus 312 L~L~~c~~l~~lp~~~-~---------------------------l~~L~~L~Ls~~~~l~~~p~~~~-----~L~~L~L 358 (857)
|++++|......|..+ . .++|+.|++++|......|..+. +|+.|++
T Consensus 176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 9999874433333222 1 25677788887765544444332 4889999
Q ss_pred cCccceecC-ccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCC-----cccc----ccCCCCCCCEEe
Q 003011 359 CGTAIEEVP-SSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLE-----RFPE----ITETMECLEYFS 428 (857)
Q Consensus 359 ~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~-----~~~~----~l~~l~~L~~L~ 428 (857)
++|.+..++ ..++.+++|++|++++|...+..|..+..+++|+.|++++|.... .+|. .+..+++|+.|+
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 999888765 558888999999999988888778788888888888888764332 2332 567788888888
Q ss_pred ccCCccccCCCCcccccCcCCcceeeccccCCcC---CC--CCC--CCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCC
Q 003011 429 LASTTIQEQPSSNEDRILPSSIANWSYGCRGLIL---PP--LPG--LSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLR 500 (857)
Q Consensus 429 L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~---~~--l~~--l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls 500 (857)
+++|.++.++..... -.++|+.|+++.+.... +. +.. .++|+.|++++|++.+ .|..+..+++|+.|+++
T Consensus 336 l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413 (680)
T ss_dssp CCSCCBCCCCTTTTT--TCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCccCCCChhHhc--cccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence 888888776554322 12667777774443211 11 111 2466666666666666 34566666667777777
Q ss_pred CCcce-ecc-ccccCCCCCcEEecccccccccCCC---CCCCcceeecccc
Q 003011 501 GNNFV-SLP-ASIKQFTQMEELILSNCNLLQSLPE---LPPSLILLEARNC 546 (857)
Q Consensus 501 ~n~l~-~lp-~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~C 546 (857)
+|.+. .+| ..+..+++|++|++++|+.....+. ..++|+.|++.+|
T Consensus 414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS
T ss_pred CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc
Confidence 66665 344 4566666666666666664433221 2345555555554
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.6e-30 Score=304.93 Aligned_cols=352 Identities=16% Similarity=0.174 Sum_probs=244.5
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCC-CCC-CCCCccEEEcCCCCCcccccC-cCCCC
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLP-SNF-SPENLIELNLPYSKVEQMWEG-KKESF 260 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~l~~l~~~-~~~l~ 260 (857)
++|++|++++|. .....|..+..+ ++|++|++++|.+..+| ..| .+++|++|+|++|.++.++.. +..++
T Consensus 26 ~~L~~L~Ls~n~------l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK------ITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC------CCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc------cCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 689999999998 455567788888 59999999999999886 556 999999999999999988765 89999
Q ss_pred CccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccC-CcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEE
Q 003011 261 KLKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIP-SSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLD 336 (857)
Q Consensus 261 ~L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~ 336 (857)
+|++|+|++|.+.. ..| .+.++++|++|++++|...+.+| ..++.+++|++|++++|......|..+ .+++|++|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 99999999998664 344 68999999999999998777776 589999999999999987666677777 899999999
Q ss_pred cCCCCCCCcccc----cccCcceEEecCccceecC---cc-ccCCCcceEEEccCcccccccc----ccccCCCCCCEee
Q 003011 337 FSDCLNLTEFPQ----FSGNIKQLYLCGTAIEEVP---SS-VECLTELAELYMRQCTRLKSIS----SRICKLKSLHLLS 404 (857)
Q Consensus 337 Ls~~~~l~~~p~----~~~~L~~L~L~~~~l~~lp---~~-l~~l~~L~~L~L~~~~~l~~lp----~~l~~l~~L~~L~ 404 (857)
+++|.. ..+|. ...+|+.|++++|.+..++ .. ...+++|+.|++++|...+..+ ..+..+++|+.|+
T Consensus 179 l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 179 LHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp EECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred cccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 999864 34443 2468999999999998753 22 2346777777777775543222 2233444555555
Q ss_pred ccCCCCCCc-----------------------------------cccccCCCCCCCEEeccCCccccCCCCcccccCcCC
Q 003011 405 LDDCCRLER-----------------------------------FPEITETMECLEYFSLASTTIQEQPSSNEDRILPSS 449 (857)
Q Consensus 405 Ls~~~~~~~-----------------------------------~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~ 449 (857)
+++|...+. ++..+..+++|+.|++++|.++.+|..++. -.++
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~--~l~~ 335 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ--HLKS 335 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHH--HCTT
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHh--cCcc
Confidence 554433210 011112234566666666666666554321 1256
Q ss_pred cceeeccccCCcC------CCCCCCCCCcEEEeeCCCCccCC---CcCCCCCCCCeeeCCCCcceeccccccCCCCCcEE
Q 003011 450 IANWSYGCRGLIL------PPLPGLSSLTGLNLSFRNITEIP---KDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEEL 520 (857)
Q Consensus 450 L~~L~l~~~~~~~------~~l~~l~~L~~L~Ls~n~l~~lp---~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 520 (857)
|+.|+++.+...- ..+..+++|+.|++++|++++++ ..+..+++|+.|++++|.++.+|..+..+++|++|
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L 415 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL 415 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEE
Confidence 6666665544321 12556666667777766666644 23566666677777766666666666666666666
Q ss_pred ecccccccccCC-CCCCCcceeecccc
Q 003011 521 ILSNCNLLQSLP-ELPPSLILLEARNC 546 (857)
Q Consensus 521 ~L~~c~~l~~lp-~l~~sL~~L~i~~C 546 (857)
++++|... .+| .+|++|+.|++++|
T Consensus 416 ~Ls~N~l~-~l~~~~~~~L~~L~Ls~N 441 (549)
T 2z81_A 416 NLSSTGIR-VVKTCIPQTLEVLDVSNN 441 (549)
T ss_dssp ECTTSCCS-CCCTTSCTTCSEEECCSS
T ss_pred ECCCCCcc-cccchhcCCceEEECCCC
Confidence 66666643 333 34456666666665
No 17
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=3.1e-30 Score=303.39 Aligned_cols=370 Identities=15% Similarity=0.148 Sum_probs=237.5
Q ss_pred CcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCC
Q 003011 158 DSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPE 237 (857)
Q Consensus 158 ~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~ 237 (857)
..++.+.+ +.+....+.+.+|.++++|++|++++|. +....|+.+..+ ++|++|++++|.++.+|.. .++
T Consensus 52 ~~L~~L~L--s~N~i~~~~~~~~~~l~~L~~L~Ls~N~------l~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~ 121 (562)
T 3a79_B 52 PRTKALSL--SQNSISELRMPDISFLSELRVLRLSHNR------IRSLDFHVFLFN-QDLEYLDVSHNRLQNISCC-PMA 121 (562)
T ss_dssp TTCCEEEC--CSSCCCCCCGGGTTTCTTCCEEECCSCC------CCEECTTTTTTC-TTCCEEECTTSCCCEECSC-CCT
T ss_pred CCcCEEEC--CCCCccccChhhhccCCCccEEECCCCC------CCcCCHHHhCCC-CCCCEEECCCCcCCccCcc-ccc
Confidence 34555544 4444456677889999999999999988 455557778888 5899999999999999888 889
Q ss_pred CccEEEcCCCCCcccc--cCcCCCCCccEEEccCCCCCccCCCCCCCCcc--ceeeccCCcc--CCccCCcccCCC--CC
Q 003011 238 NLIELNLPYSKVEQMW--EGKKESFKLKWIDLHHCQYLIRFPDPLETPNL--ERICLSDCID--LPCIPSSIENFN--NL 309 (857)
Q Consensus 238 ~L~~L~Ls~n~l~~l~--~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L--~~L~L~~~~~--~~~~p~~i~~l~--~L 309 (857)
+|++|+|++|+++.++ ..+.++++|++|+|++|.+.. .++..+++| ++|++++|.. .+..|.++..+. .|
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l 199 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL 199 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred cCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence 9999999999998765 678899999999999988643 345566666 9999998877 666666665543 11
Q ss_pred cEEeccCCCCCcccCCCC--CCCCCcEEEcCCCC----------------------------CCC----cccc--cccCc
Q 003011 310 SILCLQGCESLRRFPSNI--HFRSPITLDFSDCL----------------------------NLT----EFPQ--FSGNI 353 (857)
Q Consensus 310 ~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~----------------------------~l~----~~p~--~~~~L 353 (857)
.+++++|.....++... .+++|+.+++++|. ... .++. ...+|
T Consensus 200 -~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L 278 (562)
T 3a79_B 200 -HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278 (562)
T ss_dssp -EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred -EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence 12222222221111111 22233333333321 000 0000 00145
Q ss_pred ceEEecCccce-ecCccc-----cCC--------------------------CcceEEEccCccccccccccccCCCCCC
Q 003011 354 KQLYLCGTAIE-EVPSSV-----ECL--------------------------TELAELYMRQCTRLKSISSRICKLKSLH 401 (857)
Q Consensus 354 ~~L~L~~~~l~-~lp~~l-----~~l--------------------------~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 401 (857)
++|++++|.+. .+|..+ ..+ .+|+.|++++|...... ....+++|+
T Consensus 279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~ 356 (562)
T 3a79_B 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFT 356 (562)
T ss_dssp EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCce
Confidence 55555555554 344433 222 23555555555432211 015667777
Q ss_pred EeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC---CcccccCcCCcceeeccccCCc--CCC--CCCCCCCcEE
Q 003011 402 LLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS---SNEDRILPSSIANWSYGCRGLI--LPP--LPGLSSLTGL 474 (857)
Q Consensus 402 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~---~~~~~~lp~~L~~L~l~~~~~~--~~~--l~~l~~L~~L 474 (857)
.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+.. + ++|+.|+++.+.+. +|. +..+++|++|
T Consensus 357 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~--l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L 433 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN--M-SSLETLDVSLNSLNSHAYDRTCAWAESILVL 433 (562)
T ss_dssp EEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT--C-TTCCEEECTTSCCBSCCSSCCCCCCTTCCEE
T ss_pred EEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC--C-CCCCEEECCCCcCCCccChhhhcCcccCCEE
Confidence 77777777777677777777777777777777775542 1221 2 66777777555543 332 6778888888
Q ss_pred EeeCCCCcc-CCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCCCC----CCCcceeecccccC
Q 003011 475 NLSFRNITE-IPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLPEL----PPSLILLEARNCKQ 548 (857)
Q Consensus 475 ~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l----~~sL~~L~i~~C~~ 548 (857)
++++|.+++ +|..+. ++|+.|+|++|.++.+|..+..+++|+.|+|++|+.. .+|.. .++|+.|++++++-
T Consensus 434 ~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 434 NLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp ECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred ECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 888888876 555443 6888888888888888888888888888888888765 56542 35777888887763
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=5.5e-29 Score=306.33 Aligned_cols=352 Identities=17% Similarity=0.131 Sum_probs=244.4
Q ss_pred CCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCC-CCCC-CCCC-CCCCccEEEcCCCCCccc-ccCcC
Q 003011 182 CMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYP-LKTL-PSNF-SPENLIELNLPYSKVEQM-WEGKK 257 (857)
Q Consensus 182 ~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~l~~L~~L~Ls~n~l~~l-~~~~~ 257 (857)
-.++|+.|++++|. +....+..+..+ .+|++|++++|. +..+ |..| ++++|++|+|++|.++.+ |..+.
T Consensus 22 lp~~l~~LdLs~N~------i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------IRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCC------CCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCc------CCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 45789999999998 556667888888 599999999995 5566 6677 999999999999999977 78899
Q ss_pred CCCCccEEEccCCCCCccCC-C--CCCCCccceeeccCCccCCccC-CcccCCCCCcEEeccCCCCCcccCCCC-CC--C
Q 003011 258 ESFKLKWIDLHHCQYLIRFP-D--PLETPNLERICLSDCIDLPCIP-SSIENFNNLSILCLQGCESLRRFPSNI-HF--R 330 (857)
Q Consensus 258 ~l~~L~~L~Ls~~~~l~~lp-~--l~~l~~L~~L~L~~~~~~~~~p-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l--~ 330 (857)
.+++|++|+|++|.+...+| . +.++++|++|+|++|...+..+ ..++++++|++|++++|......+..+ .+ +
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 99999999999999777665 3 8999999999999998877655 579999999999999976555555555 34 8
Q ss_pred CCcEEEcCCCCCCCccccccc---------CcceEEecCcccee-cCccc------------------------------
Q 003011 331 SPITLDFSDCLNLTEFPQFSG---------NIKQLYLCGTAIEE-VPSSV------------------------------ 370 (857)
Q Consensus 331 ~L~~L~Ls~~~~l~~~p~~~~---------~L~~L~L~~~~l~~-lp~~l------------------------------ 370 (857)
+|+.|++++|......|...+ .|+.|++++|.+.. +|..+
T Consensus 175 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 999999999876655443222 26777777765432 11111
Q ss_pred ------cC--CCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC-Cc
Q 003011 371 ------EC--LTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS-SN 441 (857)
Q Consensus 371 ------~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~-~~ 441 (857)
.. .++|+.|++++|......|..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|.++.++. .+
T Consensus 255 ~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 11 2566777777776666666666677777777777776666666666777777777777776665533 22
Q ss_pred ccccCcCCcceeeccccCCcC-C--CCCCCCCCcEEEeeCCCCccCCCcCCCCCCC--------------------Ceee
Q 003011 442 EDRILPSSIANWSYGCRGLIL-P--PLPGLSSLTGLNLSFRNITEIPKDIGCLSSL--------------------RTLD 498 (857)
Q Consensus 442 ~~~~lp~~L~~L~l~~~~~~~-~--~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L--------------------~~L~ 498 (857)
.. + ++|+.|+++.+.+.. + .+.++++|+.|+|++|.++.++. +++| +.|+
T Consensus 335 ~~--l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 335 YG--L-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIH 407 (844)
T ss_dssp SS--C-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEE
T ss_pred cC--C-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceee
Confidence 22 2 566666664444322 1 15566666666666666655432 3344 4444
Q ss_pred CCCCcceeccc--cccCCCCCcEEecccccccccC----CCCCCCcceeeccccc
Q 003011 499 LRGNNFVSLPA--SIKQFTQMEELILSNCNLLQSL----PELPPSLILLEARNCK 547 (857)
Q Consensus 499 Ls~n~l~~lp~--~l~~l~~L~~L~L~~c~~l~~l----p~l~~sL~~L~i~~C~ 547 (857)
+++|.++.++. .+..+++|+.|+|++|+..... +..+++|+.|++++|.
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 44444443321 2447788888888888765432 2234677777777764
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.4e-29 Score=289.83 Aligned_cols=337 Identities=16% Similarity=0.164 Sum_probs=154.0
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCC-CC-CCCC-CCCCccEEEcCCCCCccc-ccCcCCC
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLK-TL-PSNF-SPENLIELNLPYSKVEQM-WEGKKES 259 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~l-p~~~-~l~~L~~L~Ls~n~l~~l-~~~~~~l 259 (857)
++|++|++++|. +....|..+..+ ++|++|++++|.+. .+ |..| .+++|++|+|++|.++.+ |..+..+
T Consensus 30 ~~l~~L~Ls~n~------i~~~~~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYVDLSLNS------IAELNETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEEECCSSC------CCEECTTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEEEecCCc------cCcCChhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 455555555555 233334445555 35555555555553 33 2333 555555555555555544 4455555
Q ss_pred CCccEEEccCCCCCccCC-C--CCCCCccceeeccCCccCCccCCc-ccCCCCCcEEeccCCCCCcccCCCC---CCCCC
Q 003011 260 FKLKWIDLHHCQYLIRFP-D--PLETPNLERICLSDCIDLPCIPSS-IENFNNLSILCLQGCESLRRFPSNI---HFRSP 332 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~~lp-~--l~~l~~L~~L~L~~~~~~~~~p~~-i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L 332 (857)
++|++|+|++|.+....| . +..+++|++|+|++|...+..|.. ++.+++|++|++++|......|..+ ...+|
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 555555555555443322 2 555555555555555554444444 4555555555555544333333332 22455
Q ss_pred cEEEcCCCCCCCccccc-----------ccCcceEEecCcccee-cCccccC---CCcceEEEccCcccccccc------
Q 003011 333 ITLDFSDCLNLTEFPQF-----------SGNIKQLYLCGTAIEE-VPSSVEC---LTELAELYMRQCTRLKSIS------ 391 (857)
Q Consensus 333 ~~L~Ls~~~~l~~~p~~-----------~~~L~~L~L~~~~l~~-lp~~l~~---l~~L~~L~L~~~~~l~~lp------ 391 (857)
+.|++++|......+.. ..+|+.|++++|.+.. .|..+.. .++|+.|++++|...+...
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 55555555432211111 1245555555555543 2222221 2555555555553332110
Q ss_pred ----cccc--CCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-C--
Q 003011 392 ----SRIC--KLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI-L-- 462 (857)
Q Consensus 392 ----~~l~--~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~-- 462 (857)
..+. ..++|+.|++++|.+.+..|..++.+++|+.|++++|.++.++...... + +.|+.|+++.+.+. .
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l-~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-L-THLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-C-TTCCEEECCSSCCCEECG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-c-ccCCEEECCCCccCCcCh
Confidence 0011 1245666666666655555555666666666666666655443321100 0 11111111100000 0
Q ss_pred CCCCCCCCCcEEEeeCCCCccC-CCcCCCCCCCCeeeCCCCcceecccc-ccCCCCCcEEecccccccc
Q 003011 463 PPLPGLSSLTGLNLSFRNITEI-PKDIGCLSSLRTLDLRGNNFVSLPAS-IKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 463 ~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~ 529 (857)
..+.++++|++|+|++|.++++ |..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+...
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 0023444555555555555442 34444455555555555554444432 2444555555555554433
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.3e-28 Score=296.59 Aligned_cols=259 Identities=19% Similarity=0.144 Sum_probs=119.6
Q ss_pred cceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCC-----cccc-------ccc
Q 003011 285 LERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLT-----EFPQ-------FSG 351 (857)
Q Consensus 285 L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~-----~~p~-------~~~ 351 (857)
|++|++++|...+..|..++.+++|++|++++|......|..+ .+++|+.|++++|.... .+|. ...
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 5555555544444444445555555555555543333333333 45555555555432111 1221 123
Q ss_pred CcceEEecCccceecCc-cccCCCcceEEEccCccc----------------------------cccccccccCCCCCCE
Q 003011 352 NIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTR----------------------------LKSISSRICKLKSLHL 402 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~----------------------------l~~lp~~l~~l~~L~~ 402 (857)
+|++|++++|.+..++. .+..+++|++|++++|.. .+..|..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 56677777777766543 356666666666665532 2222333444444444
Q ss_pred eeccCCCCCCccc-cccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc----CC-CCCCCCCCcEEEe
Q 003011 403 LSLDDCCRLERFP-EITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI----LP-PLPGLSSLTGLNL 476 (857)
Q Consensus 403 L~Ls~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~----~~-~l~~l~~L~~L~L 476 (857)
|++++|.+.+.+| ..+..+++|+.|++++|.++.++...+. ..+.|+.|++..+... .| .+.++++|+.|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT--TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh--cCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 4444444443332 3444444444444444444433322221 1244455554333211 11 2455555555555
Q ss_pred eCCCCccCC-CcCCCCCCCCeeeCCCCcceeccc---------cccCCCCCcEEecccccccccCCC----CCCCcceee
Q 003011 477 SFRNITEIP-KDIGCLSSLRTLDLRGNNFVSLPA---------SIKQFTQMEELILSNCNLLQSLPE----LPPSLILLE 542 (857)
Q Consensus 477 s~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~ 542 (857)
++|+++++| ..+..+++|+.|++++|.++.++. .+..+++|+.|+|++|+.. .+|. -.++|+.|+
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID 566 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence 555555543 234555555555555555543321 1445555555555555433 3331 123455555
Q ss_pred cccc
Q 003011 543 ARNC 546 (857)
Q Consensus 543 i~~C 546 (857)
++++
T Consensus 567 Ls~N 570 (680)
T 1ziw_A 567 LGLN 570 (680)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5443
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=302.78 Aligned_cols=365 Identities=16% Similarity=0.145 Sum_probs=273.3
Q ss_pred eecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC-CCCCccEE
Q 003011 165 LDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF-SPENLIEL 242 (857)
Q Consensus 165 L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L 242 (857)
+|++.+....++...+ ++|+.|++++|. .....|..+..+ ++|++|++++|.++.+ |..| ++++|++|
T Consensus 5 l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~------i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS---QKTTILNISQNY------ISELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp EECTTSCCSSCCCSCC---TTCSEEECCSSC------CCCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred EecCCCCccccccccc---ccccEEECCCCc------ccccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 5555554444554333 899999999998 333344677777 5899999999999988 6677 89999999
Q ss_pred EcCCCCCcccccCcCCCCCccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccCCcccCCCCC--cEEeccCCC
Q 003011 243 NLPYSKVEQMWEGKKESFKLKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNL--SILCLQGCE 318 (857)
Q Consensus 243 ~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L--~~L~L~~c~ 318 (857)
+|++|+++.+|.. .+++|++|+|++|.+.. .+| .+.++++|++|++++|.... ..++.+++| +.|++++|.
T Consensus 75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp ECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECT
T ss_pred ecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccc
Confidence 9999999999987 89999999999999765 466 78999999999999987665 457778888 999999876
Q ss_pred C--CcccCCCC---------------------------CCCCCcEEEcCCCCC-------CCcccc--------------
Q 003011 319 S--LRRFPSNI---------------------------HFRSPITLDFSDCLN-------LTEFPQ-------------- 348 (857)
Q Consensus 319 ~--l~~lp~~~---------------------------~l~~L~~L~Ls~~~~-------l~~~p~-------------- 348 (857)
. ....|..+ .+++|+.|++++|.. .+.+|.
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 5 34444333 255666666666530 000000
Q ss_pred ---------------cccCcceEEecCccce-ecCccc-----cCCCcceEEEccCcccccccc-ccccCC---CCCCEe
Q 003011 349 ---------------FSGNIKQLYLCGTAIE-EVPSSV-----ECLTELAELYMRQCTRLKSIS-SRICKL---KSLHLL 403 (857)
Q Consensus 349 ---------------~~~~L~~L~L~~~~l~-~lp~~l-----~~l~~L~~L~L~~~~~l~~lp-~~l~~l---~~L~~L 403 (857)
...+|++|++++|.+. .+|..+ +.+++|+.+++++|.. .+| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 0126777777777777 677776 7777777777777766 444 333333 568888
Q ss_pred eccCCCCCCccccccCCCCCCCEEeccCCcccc-CCCCcccccCcCCcceeeccccCCcC-C----CCCCCCCCcEEEee
Q 003011 404 SLDDCCRLERFPEITETMECLEYFSLASTTIQE-QPSSNEDRILPSSIANWSYGCRGLIL-P----PLPGLSSLTGLNLS 477 (857)
Q Consensus 404 ~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-lp~~~~~~~lp~~L~~L~l~~~~~~~-~----~l~~l~~L~~L~Ls 477 (857)
++++|...... ....+++|++|++++|.++. .|..+.. + ++|+.|+++.+.+.- + .+.++++|++|+++
T Consensus 308 ~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l-~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 308 TVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGH--L-TELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCC--C-SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhcc--C-CCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 88888765432 12688999999999999996 5655543 3 789999997776542 1 27899999999999
Q ss_pred CCCCcc-CCCc-CCCCCCCCeeeCCCCcce-eccccccCCCCCcEEecccccccccCCC---CCCCcceeecccccCCCc
Q 003011 478 FRNITE-IPKD-IGCLSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSNCNLLQSLPE---LPPSLILLEARNCKQLQS 551 (857)
Q Consensus 478 ~n~l~~-lp~~-l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~C~~L~~ 551 (857)
+|.+.+ +|.. +..+++|+.|++++|.++ .+|..+. ++|+.|+|++|+.. .+|. -.++|+.|++++| .++.
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~ 458 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN-QLKS 458 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC-cCCc
Confidence 999998 8865 788999999999999986 5665553 79999999999766 6774 3478999999998 5677
Q ss_pred ccCc
Q 003011 552 LPEL 555 (857)
Q Consensus 552 l~~~ 555 (857)
+|..
T Consensus 459 l~~~ 462 (520)
T 2z7x_B 459 VPDG 462 (520)
T ss_dssp CCTT
T ss_pred cCHH
Confidence 7753
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=297.55 Aligned_cols=383 Identities=17% Similarity=0.114 Sum_probs=288.4
Q ss_pred cCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCC-CC-
Q 003011 157 TDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPS-NF- 234 (857)
Q Consensus 157 ~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~- 234 (857)
...++.+.+. .+....+.+.+|.++++|++|++++|. .....|..+..+ .+|++|++++|.++.+|. .+
T Consensus 51 l~~L~~L~Ls--~n~i~~i~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~ 121 (570)
T 2z63_A 51 FPELQVLDLS--RCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGL-SSLQKLVAVETNLASLENFPIG 121 (570)
T ss_dssp CSSCCEEECT--TCCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTC-TTCCEEECTTSCCCCSTTCSCT
T ss_pred CCCceEEECC--CCcCCccCcccccCchhCCEEeCcCCc------CCccCHhhhcCc-cccccccccccccccCCCcccc
Confidence 3455555444 444455678899999999999999998 444556778887 589999999999999976 45
Q ss_pred CCCCccEEEcCCCCCcc--cccCcCCCCCccEEEccCCCCCccCC-CCCCCCcc----ceeeccCCccCC----------
Q 003011 235 SPENLIELNLPYSKVEQ--MWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNL----ERICLSDCIDLP---------- 297 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L----~~L~L~~~~~~~---------- 297 (857)
.+++|++|++++|.++. +|..+.++++|++|++++|.+....| .+..+++| ++|++++|....
T Consensus 122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~ 201 (570)
T 2z63_A 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (570)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCc
Confidence 89999999999999985 68889999999999999998654333 34444444 444444443322
Q ss_pred -----------------------------------------------------------------------ccCCcccCC
Q 003011 298 -----------------------------------------------------------------------CIPSSIENF 306 (857)
Q Consensus 298 -----------------------------------------------------------------------~~p~~i~~l 306 (857)
.+|..++.+
T Consensus 202 L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l 281 (570)
T 2z63_A 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281 (570)
T ss_dssp EEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG
T ss_pred ceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc
Confidence 233445566
Q ss_pred CCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccc-cccCcceEEecCccceecCccccCCCcceEEEccCc
Q 003011 307 NNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQ-FSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQC 384 (857)
Q Consensus 307 ~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~-~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~ 384 (857)
++|+.|++++| .+..+|..+ .+ +|+.|++++|... .+|. ...+|+.|++.+|.+...... ..+++|+.|++++|
T Consensus 282 ~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n 357 (570)
T 2z63_A 282 TNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRN 357 (570)
T ss_dssp TTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSS
T ss_pred CcccEEEecCc-cchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCC
Confidence 77777777764 344566655 44 7777777777544 4443 345778888888777654433 77899999999999
Q ss_pred cccccc--cccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-
Q 003011 385 TRLKSI--SSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI- 461 (857)
Q Consensus 385 ~~l~~l--p~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~- 461 (857)
...... |..+..+++|+.|++++|...+..+. +..+++|+.|++++|.++..+.......+ ++|+.|+++.+...
T Consensus 358 ~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRV 435 (570)
T ss_dssp CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC-TTCCEEECTTSCCEE
T ss_pred ccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC-CCCCEEeCcCCcccc
Confidence 876543 67788999999999999987765554 89999999999999999876542111113 88999999666543
Q ss_pred -CC-CCCCCCCCcEEEeeCCCCcc--CCCcCCCCCCCCeeeCCCCcceec-cccccCCCCCcEEecccccccccCCCC--
Q 003011 462 -LP-PLPGLSSLTGLNLSFRNITE--IPKDIGCLSSLRTLDLRGNNFVSL-PASIKQFTQMEELILSNCNLLQSLPEL-- 534 (857)
Q Consensus 462 -~~-~l~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~l-- 534 (857)
.+ .+.++++|++|++++|.+.+ +|..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|+.....|..
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 22 38899999999999999983 899999999999999999999866 788999999999999999876655542
Q ss_pred -CCCcceeecccccCCCcccC
Q 003011 535 -PPSLILLEARNCKQLQSLPE 554 (857)
Q Consensus 535 -~~sL~~L~i~~C~~L~~l~~ 554 (857)
.++|+.|++++|+--...+.
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCcEEEecCCcccCCCcc
Confidence 37899999999876555544
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.8e-29 Score=285.08 Aligned_cols=315 Identities=19% Similarity=0.270 Sum_probs=182.6
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCc
Q 003011 215 DELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCI 294 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~ 294 (857)
++|++|++++|.++.+|.. +.+|++|++++|+++.++.. .++|++|++++|.+. .+|++.++++|++|++++|.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCc
Confidence 4555555555555555543 25556666666655554432 146677777766643 36666677777777777665
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCC
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLT 374 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~ 374 (857)
..+ +|..+ .+|++|++++| .++.+|....+++|+.|++++|. +..+|....+|+.|++++|.+..+|. ++.++
T Consensus 165 l~~-lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~ 237 (454)
T 1jl5_A 165 LKK-LPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLP 237 (454)
T ss_dssp CSC-CCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCT
T ss_pred Ccc-cCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCC
Confidence 443 45432 46777777664 44446643367777777777764 34466666677777777777777763 66777
Q ss_pred cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceee
Q 003011 375 ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWS 454 (857)
Q Consensus 375 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~ 454 (857)
+|++|++++|...+ +|. .+++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|. +|++|+.|+
T Consensus 238 ~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~------~~~~L~~L~ 303 (454)
T 1jl5_A 238 FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE------LPPNLYYLN 303 (454)
T ss_dssp TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC------CCTTCCEEE
T ss_pred CCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC------cCCcCCEEE
Confidence 77777777765543 443 23677777777776554 4432 3667777777777776654 446777777
Q ss_pred ccccCCcCCCCCCC-CCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCCC
Q 003011 455 YGCRGLILPPLPGL-SSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLPE 533 (857)
Q Consensus 455 l~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~ 533 (857)
++.+.+.- +..+ ++|+.|++++|+++++|.. +++|+.|++++|.++.+|. .+++|++|++++|+... +|.
T Consensus 304 l~~N~l~~--i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~-l~~ 374 (454)
T 1jl5_A 304 ASSNEIRS--LCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLRE-FPD 374 (454)
T ss_dssp CCSSCCSE--ECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS-CCC
T ss_pred CcCCcCCc--ccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCc-CCC
Confidence 75554332 2223 4788888888887777654 5778888888888777776 46778888888776544 444
Q ss_pred CCCCcceeecccccCCCcccCcchhhhhhhhhhh
Q 003011 534 LPPSLILLEARNCKQLQSLPELSSYLEELDASKL 567 (857)
Q Consensus 534 l~~sL~~L~i~~C~~L~~l~~~~~~l~~L~~~~l 567 (857)
+|.++..|.. +.....+|..+..++.|+++.+
T Consensus 375 ip~~l~~L~~--n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 375 IPESVEDLRM--NSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CCTTCCEEEC--CC--------------------
T ss_pred ChHHHHhhhh--cccccccccccCcCCEEECCCC
Confidence 5555554432 2233344444455666666554
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=8.1e-29 Score=283.46 Aligned_cols=339 Identities=17% Similarity=0.126 Sum_probs=265.8
Q ss_pred ccCCeeEEEEeCCCCCCC-CCCC-CCCCccEEEcCCCCCc-cc-ccCcCCCCCccEEEccCCCCCccCC-CCCCCCccce
Q 003011 213 LSDELRYLHWHGYPLKTL-PSNF-SPENLIELNLPYSKVE-QM-WEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLER 287 (857)
Q Consensus 213 l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~Ls~n~l~-~l-~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~ 287 (857)
+|++|++|++++|.++.+ |..| ++++|++|+|++|.+. .+ +..+..+++|++|+|++|.+....| .+.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 457899999999999988 6667 9999999999999986 55 4678999999999999999777667 6999999999
Q ss_pred eeccCCccCCccCCc--ccCCCCCcEEeccCCCCCcccCCC-C-CCCCCcEEEcCCCCCCCcccccc-----cCcceEEe
Q 003011 288 ICLSDCIDLPCIPSS--IENFNNLSILCLQGCESLRRFPSN-I-HFRSPITLDFSDCLNLTEFPQFS-----GNIKQLYL 358 (857)
Q Consensus 288 L~L~~~~~~~~~p~~--i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~~~~l~~~p~~~-----~~L~~L~L 358 (857)
|++++|...+.+|.. ++.+++|++|++++|......|.. + .+++|++|++++|......+..+ .+++.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999888766655 999999999999997655555664 3 89999999999997665555444 36789999
Q ss_pred cCccceecCcc---------ccCCCcceEEEccCccccccccccccCC---CCCCEeeccCCCCCCccc----------c
Q 003011 359 CGTAIEEVPSS---------VECLTELAELYMRQCTRLKSISSRICKL---KSLHLLSLDDCCRLERFP----------E 416 (857)
Q Consensus 359 ~~~~l~~lp~~---------l~~l~~L~~L~L~~~~~l~~lp~~l~~l---~~L~~L~Ls~~~~~~~~~----------~ 416 (857)
+++.+..++.. +..+++|++|++++|...+..|..+..+ ++|+.|++++|....... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 99999887643 3456899999999999888877766543 899999999986554211 1
Q ss_pred ccC--CCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCc-C-C-CCCCCCCCcEEEeeCCCCccC-CCcCCC
Q 003011 417 ITE--TMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLI-L-P-PLPGLSSLTGLNLSFRNITEI-PKDIGC 490 (857)
Q Consensus 417 ~l~--~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~-~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~ 490 (857)
.+. ..++|+.|++++|.++..+..... -.++|+.|+++.+.+. . + .+.++++|++|+|++|.+.++ |..++.
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 345 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT
T ss_pred ccccccccCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC
Confidence 122 236899999999999876443322 2278889998666543 2 2 388889999999999999885 567888
Q ss_pred CCCCCeeeCCCCcceec-cccccCCCCCcEEecccccccccCCC---CCCCcceeecccccCCCccc
Q 003011 491 LSSLRTLDLRGNNFVSL-PASIKQFTQMEELILSNCNLLQSLPE---LPPSLILLEARNCKQLQSLP 553 (857)
Q Consensus 491 l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~C~~L~~l~ 553 (857)
+++|+.|+|++|.++.+ |..+..+++|++|+|++|+.....+. -.++|+.|++++++--...|
T Consensus 346 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998866 67788899999999999876653332 23678888888876443333
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=1.1e-28 Score=283.39 Aligned_cols=321 Identities=17% Similarity=0.217 Sum_probs=177.8
Q ss_pred hcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCC
Q 003011 180 FACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKES 259 (857)
Q Consensus 180 f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 259 (857)
|..+++|++|++++|.+. .++. +..+ ++|++|++++|.+..++....+++|++|++++|.++.++. +..+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~-------~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l 133 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLT-------DITP-LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNL 133 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-------CCGG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred hhhhcCCCEEECCCCccC-------Cchh-hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCC
Confidence 455555666665555421 1121 4444 3555566555555555441255555566665555555543 5555
Q ss_pred CCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCC
Q 003011 260 FKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSD 339 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 339 (857)
++|++|++++|. +..++.+..+++|++|++.+ .. ..++ .++.+++|+.|++++|. +..++....+++|+.|++++
T Consensus 134 ~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~-~~-~~~~-~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 134 TNLNRLELSSNT-ISDISALSGLTSLQQLSFGN-QV-TDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATN 208 (466)
T ss_dssp TTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE-SC-CCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCc-cCCChhhccCCcccEeecCC-cc-cCch-hhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecC
Confidence 555555555554 23344455555555555542 11 1122 25555555555555532 33333322455555555555
Q ss_pred CCCCCccc-ccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcccccc
Q 003011 340 CLNLTEFP-QFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEIT 418 (857)
Q Consensus 340 ~~~l~~~p-~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l 418 (857)
|......| ....+|+.|++++|.+..++ .+..+++|+.|++++|...+..+ +..+++|+.|++++|.+....+ +
T Consensus 209 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 209 NQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred CcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--c
Confidence 54322222 11234555555555555442 34455555555555554433322 4455555555555554443322 4
Q ss_pred CCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeee
Q 003011 419 ETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLD 498 (857)
Q Consensus 419 ~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 498 (857)
..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+++. +..+++|+.|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 337 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP-------------------------ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLF 337 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG-------------------------GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEE
T ss_pred cCCCccCeEEcCCCcccCchh-------------------------hcCCCCCCEEECcCCcCCCchh-hccCccCCEeE
Confidence 455555555555555544332 4567888888888888887654 67788888888
Q ss_pred CCCCcceeccccccCCCCCcEEecccccccccCC-CCCCCcceeeccccc
Q 003011 499 LRGNNFVSLPASIKQFTQMEELILSNCNLLQSLP-ELPPSLILLEARNCK 547 (857)
Q Consensus 499 Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp-~l~~sL~~L~i~~C~ 547 (857)
+++|.++.++ .+..+++|+.|++++|+.....| .-.++|+.|++++|+
T Consensus 338 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 338 FYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 8888888775 67788888888888887766555 223567777777664
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=3.9e-28 Score=278.61 Aligned_cols=321 Identities=16% Similarity=0.209 Sum_probs=261.9
Q ss_pred cCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCC
Q 003011 157 TDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSP 236 (857)
Q Consensus 157 ~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l 236 (857)
...++.+.+..+.+ ..+.+ |.++++|++|++++|.+. .++. +..+ ++|++|++++|.++.+|....+
T Consensus 67 l~~L~~L~Ls~n~l--~~~~~--~~~l~~L~~L~l~~n~l~-------~~~~-~~~l-~~L~~L~L~~n~l~~~~~~~~l 133 (466)
T 1o6v_A 67 LNNLTQINFSNNQL--TDITP--LKNLTKLVDILMNNNQIA-------DITP-LANL-TNLTGLTLFNNQITDIDPLKNL 133 (466)
T ss_dssp CTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCC-------CCGG-GTTC-TTCCEEECCSSCCCCCGGGTTC
T ss_pred hcCCCEEECCCCcc--CCchh--hhccccCCEEECCCCccc-------cChh-hcCC-CCCCEEECCCCCCCCChHHcCC
Confidence 34556655554443 33333 999999999999999832 2232 6677 5999999999999999874499
Q ss_pred CCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccC
Q 003011 237 ENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQG 316 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~ 316 (857)
++|++|++++|.+..++ .+..+++|++|+++++ ...++.+.++++|++|++++|.... + +.+..+++|++|++++
T Consensus 134 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~ 208 (466)
T 1o6v_A 134 TNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATN 208 (466)
T ss_dssp TTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccCCCh-hhccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecC
Confidence 99999999999999886 4899999999999743 3445568999999999999987544 3 3589999999999999
Q ss_pred CCCCcccCCCCCCCCCcEEEcCCCCCCCccccc--ccCcceEEecCccceecCccccCCCcceEEEccCccccccccccc
Q 003011 317 CESLRRFPSNIHFRSPITLDFSDCLNLTEFPQF--SGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRI 394 (857)
Q Consensus 317 c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~--~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l 394 (857)
|. +..++....+++|+.|++++|. +..++.. ..+|+.|++++|.+..++. +..+++|+.|++++|...+..+ +
T Consensus 209 n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 209 NQ-ISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp SC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred Cc-ccccccccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--c
Confidence 65 4444443479999999999985 4444432 3589999999999998876 8899999999999997766444 8
Q ss_pred cCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEE
Q 003011 395 CKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGL 474 (857)
Q Consensus 395 ~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L 474 (857)
..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++..+. +..+++|+.|
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-------------------------~~~l~~L~~L 336 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-------------------------VSSLTKLQRL 336 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-------------------------GGGCTTCCEE
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-------------------------hccCccCCEe
Confidence 899999999999998876544 7899999999999999886654 2357899999
Q ss_pred EeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccc
Q 003011 475 NLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 475 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 529 (857)
++++|.++++ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|+...
T Consensus 337 ~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence 9999999987 468899999999999999997775 8999999999999998765
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=288.76 Aligned_cols=366 Identities=16% Similarity=0.147 Sum_probs=247.9
Q ss_pred eecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC-CCCCccEE
Q 003011 165 LDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF-SPENLIEL 242 (857)
Q Consensus 165 L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L 242 (857)
+|++......++...+ ++|+.|++++|. +....+..+..+ ++|++|++++|.++.+ |..| .+++|++|
T Consensus 36 l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~------i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 36 VDYSNRNLTHVPKDLP---PRTKALSLSQNS------ISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp EECTTSCCCSCCTTSC---TTCCEEECCSSC------CCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred EEcCCCCCccCCCCCC---CCcCEEECCCCC------ccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 4444443334443332 678888888877 233334566666 4788888888888777 4556 77888888
Q ss_pred EcCCCCCcccccCcCCCCCccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccCCcccCCCCC--cEEeccCCC
Q 003011 243 NLPYSKVEQMWEGKKESFKLKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNL--SILCLQGCE 318 (857)
Q Consensus 243 ~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L--~~L~L~~c~ 318 (857)
+|++|.++.+|.. .+++|++|+|++|.+.. .+| .+.++++|++|++++|..... .+..+++| +.|++++|.
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 8888888888766 77888888888887544 233 577788888888888765542 34455555 888887765
Q ss_pred C--CcccCCCC-CCC-CCcEEEcCCCCCCCccccc----ccCcceEEecCcc----------------------------
Q 003011 319 S--LRRFPSNI-HFR-SPITLDFSDCLNLTEFPQF----SGNIKQLYLCGTA---------------------------- 362 (857)
Q Consensus 319 ~--l~~lp~~~-~l~-~L~~L~Ls~~~~l~~~p~~----~~~L~~L~L~~~~---------------------------- 362 (857)
. ....|..+ .+. ..-.+++++|.....++.. ..+|+.|++++|.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 5 34444433 221 1114566666555444332 2356677777663
Q ss_pred -----ceecCccccCCCcceEEEccCccccccccccc-----cCCC--------------------------CCCEeecc
Q 003011 363 -----IEEVPSSVECLTELAELYMRQCTRLKSISSRI-----CKLK--------------------------SLHLLSLD 406 (857)
Q Consensus 363 -----l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l-----~~l~--------------------------~L~~L~Ls 406 (857)
+..++..+ ..++|++|++++|...+.+|..+ ..++ +|+.|+++
T Consensus 261 l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEcc
Confidence 11111111 23489999999999888888765 3333 35566666
Q ss_pred CCCCCCccccccCCCCCCCEEeccCCcccc-CCCCcccccCcCCcceeeccccCCcC-C----CCCCCCCCcEEEeeCCC
Q 003011 407 DCCRLERFPEITETMECLEYFSLASTTIQE-QPSSNEDRILPSSIANWSYGCRGLIL-P----PLPGLSSLTGLNLSFRN 480 (857)
Q Consensus 407 ~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-lp~~~~~~~lp~~L~~L~l~~~~~~~-~----~l~~l~~L~~L~Ls~n~ 480 (857)
+|...... ....+++|++|++++|.++. .|..+.. + ++|+.|+++.+.+.- + .+.++++|+.|++++|.
T Consensus 340 ~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 340 DTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST--L-KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS--C-SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred CCCccccc--CccCCCCceEEECCCCccccchhhhhcc--c-CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence 65543221 12688999999999999996 5555443 3 789999997776543 2 28899999999999999
Q ss_pred Ccc-CCCc-CCCCCCCCeeeCCCCcce-eccccccCCCCCcEEecccccccccCCC---CCCCcceeecccccCCCcccC
Q 003011 481 ITE-IPKD-IGCLSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSNCNLLQSLPE---LPPSLILLEARNCKQLQSLPE 554 (857)
Q Consensus 481 l~~-lp~~-l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l~~lp~---l~~sL~~L~i~~C~~L~~l~~ 554 (857)
+.+ +|.. +..+++|+.|++++|.++ .+|..+. ++|+.|+|++|+.. .+|. -.++|+.|++++| .++.+|.
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 490 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN-QLKSVPD 490 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS-CCCCCCT
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC-CCCCCCH
Confidence 998 8864 788999999999999986 4554443 79999999999654 6764 2478999999998 4667765
Q ss_pred c
Q 003011 555 L 555 (857)
Q Consensus 555 ~ 555 (857)
.
T Consensus 491 ~ 491 (562)
T 3a79_B 491 G 491 (562)
T ss_dssp T
T ss_pred H
Confidence 3
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=4.8e-28 Score=266.72 Aligned_cols=303 Identities=16% Similarity=0.213 Sum_probs=194.8
Q ss_pred hcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCC
Q 003011 180 FACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKES 259 (857)
Q Consensus 180 f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 259 (857)
+..+++|+.|+++++.+ ..++ ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+
T Consensus 40 ~~~l~~L~~L~l~~~~i-------~~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l 109 (347)
T 4fmz_A 40 QEELESITKLVVAGEKV-------ASIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNL 109 (347)
T ss_dssp HHHHTTCSEEECCSSCC-------CCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred chhcccccEEEEeCCcc-------ccch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCC
Confidence 45678888999888763 2233 36666 588888888888888877338888888888888888875 57888
Q ss_pred CCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCC
Q 003011 260 FKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSD 339 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 339 (857)
++|++|++++|.+ ..++.+..+++|++|++++|.....++. +..+++|++|++++|. +..++....+++|+.|++++
T Consensus 110 ~~L~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~ 186 (347)
T 4fmz_A 110 TNLRELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNY 186 (347)
T ss_dssp TTCSEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTT
T ss_pred CcCCEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccC
Confidence 8888888888874 4455578888888888888876665544 7888888888888754 44444333677777777777
Q ss_pred CCCCCcccc--cccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccc
Q 003011 340 CLNLTEFPQ--FSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEI 417 (857)
Q Consensus 340 ~~~l~~~p~--~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~ 417 (857)
|.. ..++. ...+|+.|++++|.+..++. +..+++|++|++++|......+ +..+++|+.|++++|.+... ..
T Consensus 187 n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 187 NQI-EDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp SCC-CCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred Ccc-cccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 642 23322 22355666666666655544 5555666666666654443222 55566666666666544432 34
Q ss_pred cCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCe
Q 003011 418 TETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRT 496 (857)
Q Consensus 418 l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~ 496 (857)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+ .|..++.+++|+.
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDISV-------------------------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred HhcCCCcCEEEccCCccCCChh-------------------------hcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 5555566666666655554421 2345666666666666665 3345566666666
Q ss_pred eeCCCCcceeccccccCCCCCcEEecccccc
Q 003011 497 LDLRGNNFVSLPASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 497 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~ 527 (857)
|++++|.++.++. +..+++|+.|++++|+.
T Consensus 316 L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASLSKMDSADFANQVI 345 (347)
T ss_dssp EECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred EEccCCccccccC-hhhhhccceeehhhhcc
Confidence 6666666665554 56666666666666653
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=5.6e-28 Score=270.76 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=233.1
Q ss_pred CCCCccEEEEecCCccccccceeecCCc-cccccCCeeEEEEeCCCCCCCCC-CC-CCCCccEEEcCCCCCcccc-cCcC
Q 003011 182 CMTNLRMLKFYVPKLSKLSDVKVHLHNG-LDYLSDELRYLHWHGYPLKTLPS-NF-SPENLIELNLPYSKVEQMW-EGKK 257 (857)
Q Consensus 182 ~l~~Lr~L~l~~n~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~l~~l~-~~~~ 257 (857)
.+.+|+.|++.++. ...+|.. +..+ ++|++|++++|.++.+|. .| .+++|++|+|++|.++.++ ..+.
T Consensus 43 ~l~~l~~l~l~~~~-------l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-------MRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCE-------ESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCc-------hhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 45788888888875 3445655 3455 588899998888888765 55 8888999999998888775 4468
Q ss_pred CCCCccEEEccCCCCCccCC-C-CCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEE
Q 003011 258 ESFKLKWIDLHHCQYLIRFP-D-PLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITL 335 (857)
Q Consensus 258 ~l~~L~~L~Ls~~~~l~~lp-~-l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 335 (857)
.+++|++|+|++|.+. .+| . +.++++|++|++++|......|..++.+++|++|++++|. ++.++ ...+++|+.|
T Consensus 115 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~L~~L 191 (390)
T 3o6n_A 115 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD-LSLIPSLFHA 191 (390)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC-GGGCTTCSEE
T ss_pred CCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc-ccccccccee
Confidence 8888999999988754 555 3 6788899999998888777777778888999999998853 44443 2267888888
Q ss_pred EcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccc
Q 003011 336 DFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFP 415 (857)
Q Consensus 336 ~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~ 415 (857)
++++|. +..++ ...+|+.|++++|.+..+|... +++|+.|++++|..... ..+..+++|+.|++++|.+.+..|
T Consensus 192 ~l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 192 NVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp ECCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES
T ss_pred eccccc-ccccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh
Confidence 888874 33332 2347888899998888886643 57888999988876653 457888888888888888888778
Q ss_pred cccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCC
Q 003011 416 EITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLR 495 (857)
Q Consensus 416 ~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 495 (857)
..+..+++|+.|++++|.++.+|... ..+++|++|+|++|.+.++|..+..+++|+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYG------------------------QPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSS------------------------SCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred hHccccccCCEEECCCCcCcccCccc------------------------CCCCCCCEEECCCCcceecCccccccCcCC
Confidence 88888888888888888887766533 246788888888888888887777888888
Q ss_pred eeeCCCCcceeccccccCCCCCcEEeccccccc
Q 003011 496 TLDLRGNNFVSLPASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 496 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 528 (857)
.|+|++|.++.+| +..+++|+.|++++|+..
T Consensus 322 ~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 322 NLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred EEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 8888888888775 667788888888888753
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=273.98 Aligned_cols=290 Identities=21% Similarity=0.214 Sum_probs=214.8
Q ss_pred cCCeeEEEEeCCCCCCCC-CCC-CCCCccEEEcCCCCCccc-ccCcCCCCCccEEEccCCCCCccCC--CCCCCCcccee
Q 003011 214 SDELRYLHWHGYPLKTLP-SNF-SPENLIELNLPYSKVEQM-WEGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERI 288 (857)
Q Consensus 214 ~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L 288 (857)
|.+|++|++++|.++.++ ..| .+++|++|+|++|.++.+ |..+.++++|++|+|++|.+. .+| .+.++++|++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 456777777777777774 445 777788888888777766 566777778888888777743 444 36777788888
Q ss_pred eccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccc----cccCcceEEecCccc
Q 003011 289 CLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQ----FSGNIKQLYLCGTAI 363 (857)
Q Consensus 289 ~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~----~~~~L~~L~L~~~~l 363 (857)
+|++|......|..+..+++|++|++++|......+..+ .+++|+.|++++|.. ..++. ...+|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-SSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-cccChhHhcccCCCcEEeCCCCcC
Confidence 888777776667777778888888887754333333334 677777777777643 33332 234677888888888
Q ss_pred eecCc-cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcc
Q 003011 364 EEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNE 442 (857)
Q Consensus 364 ~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~ 442 (857)
..++. .+..+++|+.|++++|...+.+|..+....+|+.|++++|.+....+..+..+++|+.|++++|.++.++...
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~- 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM- 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS-
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh-
Confidence 87655 5778888888888888888888777777778888888888777655567888888888888888887766543
Q ss_pred cccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcceecccc-ccCCCCCcEE
Q 003011 443 DRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFVSLPAS-IKQFTQMEEL 520 (857)
Q Consensus 443 ~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L 520 (857)
+.++++|+.|+|++|.+.. .|..+..+++|+.|+|++|.++.+|.. +..+++|+.|
T Consensus 268 ----------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 268 ----------------------LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp ----------------------CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEE
T ss_pred ----------------------ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEE
Confidence 4467889999999998888 467888889999999999988877754 5778888899
Q ss_pred eccccccc
Q 003011 521 ILSNCNLL 528 (857)
Q Consensus 521 ~L~~c~~l 528 (857)
+|++|+..
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 98888754
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.8e-27 Score=266.72 Aligned_cols=300 Identities=14% Similarity=0.089 Sum_probs=248.7
Q ss_pred CCeeEEEEeCCCCCCCCCCC--CCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC-CCCCCCccceeec
Q 003011 215 DELRYLHWHGYPLKTLPSNF--SPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICL 290 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L 290 (857)
.+|++|+++++.++.+|..+ .+++|++|+|++|.++.++. .+..+++|++|+|++|.+....| .+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 58999999999999999875 89999999999999998874 78999999999999999766556 4899999999999
Q ss_pred cCCccCCccCCc-ccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCc
Q 003011 291 SDCIDLPCIPSS-IENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPS 368 (857)
Q Consensus 291 ~~~~~~~~~p~~-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~ 368 (857)
++|... .+|.. ++.+++|++|++++|......|..+ .+++|++|++++|.....-...+.+|+.|++++|.+..++
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~- 202 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA- 202 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE-
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC-
Confidence 998766 45554 6899999999999965444334444 8999999999998655443455678999999999888764
Q ss_pred cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcC
Q 003011 369 SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPS 448 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~ 448 (857)
..++|+.|++++|..... |. ...++|+.|++++|.+... ..+..+++|+.|++++|.++.++...
T Consensus 203 ---~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~------- 267 (390)
T 3o6n_A 203 ---IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP------- 267 (390)
T ss_dssp ---CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG-------
T ss_pred ---CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH-------
Confidence 346899999999876544 43 2357899999999987764 57888999999999999988664322
Q ss_pred CcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEeccccccc
Q 003011 449 SIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 449 ~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 528 (857)
+.++++|+.|+|++|+++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+..
T Consensus 268 ----------------~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 268 ----------------FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp ----------------GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred ----------------ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc
Confidence 4578999999999999999998889999999999999999999999999999999999999865
Q ss_pred ccCCCCCCCcceeeccccc
Q 003011 529 QSLPELPPSLILLEARNCK 547 (857)
Q Consensus 529 ~~lp~l~~sL~~L~i~~C~ 547 (857)
..-....++|+.|++++++
T Consensus 332 ~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 332 TLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCTTCCCSEEECCSSC
T ss_pred eeCchhhccCCEEEcCCCC
Confidence 5433555778888887764
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.9e-26 Score=262.89 Aligned_cols=318 Identities=22% Similarity=0.306 Sum_probs=203.6
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCcc
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLK 263 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 263 (857)
++|+.|++++|.+.. +|.. +.+|++|++++|.++.+|.. +++|++|++++|+++.+| .+..+++|+
T Consensus 91 ~~L~~L~l~~n~l~~-------lp~~----~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~ 156 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-------LPEL----PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLK 156 (454)
T ss_dssp TTCSEEECCSSCCSS-------CCCC----CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCC
T ss_pred CCCCEEEccCCcCCc-------cccc----cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCC
Confidence 678888888877321 3432 25788888888888777653 267888888888888877 578888888
Q ss_pred EEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCC
Q 003011 264 WIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNL 343 (857)
Q Consensus 264 ~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l 343 (857)
+|++++|++. .+|.. .++|++|++++|...+ +| +++.+++|+.|++++| .++.+|.. .++|+.|++++|. +
T Consensus 157 ~L~l~~N~l~-~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N-~l~~l~~~--~~~L~~L~l~~n~-l 227 (454)
T 1jl5_A 157 IIDVDNNSLK-KLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN-SLKKLPDL--PLSLESIVAGNNI-L 227 (454)
T ss_dssp EEECCSSCCS-CCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS-CCSSCCCC--CTTCCEEECCSSC-C
T ss_pred EEECCCCcCc-ccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC-cCCcCCCC--cCcccEEECcCCc-C
Confidence 8888888744 46643 2578888888876554 55 5788888888888775 34445543 3578888888874 4
Q ss_pred Cccccc--ccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCC
Q 003011 344 TEFPQF--SGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETM 421 (857)
Q Consensus 344 ~~~p~~--~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l 421 (857)
..+|.+ ..+|+.|++++|.++.+|.. +++|+.|++++|...+ +|.. +++|+.|++++|.+.+ +|.. .
T Consensus 228 ~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~ 296 (454)
T 1jl5_A 228 EELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---P 296 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---C
T ss_pred CcccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---C
Confidence 466643 23677888888888877753 4778888888886554 5542 3778888888887654 2211 2
Q ss_pred CCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcC-CCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCC
Q 003011 422 ECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLIL-PPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLR 500 (857)
Q Consensus 422 ~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 500 (857)
++|+.|++++|.++.++. +|++|+.|+++.+.+.- |. .+++|+.|++++|.++++|. .+++|+.|+++
T Consensus 297 ~~L~~L~l~~N~l~~i~~------~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~ 365 (454)
T 1jl5_A 297 PNLYYLNASSNEIRSLCD------LPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE---LPQNLKQLHVE 365 (454)
T ss_dssp TTCCEEECCSSCCSEECC------CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CcCCEEECcCCcCCcccC------CcCcCCEEECCCCccccccc--cCCcCCEEECCCCccccccc---hhhhccEEECC
Confidence 578888888888877654 45678888886655432 22 26899999999999999887 57899999999
Q ss_pred CCccee---ccccccCC-------------CCCcEEecccccccccCCCCCCCcceeeccccc
Q 003011 501 GNNFVS---LPASIKQF-------------TQMEELILSNCNLLQSLPELPPSLILLEARNCK 547 (857)
Q Consensus 501 ~n~l~~---lp~~l~~l-------------~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C~ 547 (857)
+|.++. +|.++..+ ++|+.|++++|+..+ +|.+|++++.|.+.+|.
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~-~~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPDIPESVEDLRMNSER 427 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc-cccchhhHhheeCcCcc
Confidence 999876 55666555 566666666665433 35555566666665554
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-27 Score=281.08 Aligned_cols=304 Identities=16% Similarity=0.174 Sum_probs=240.9
Q ss_pred CCCCccEEEEecCCccccccceeecCCc-cccccCCeeEEEEeCCCCCCCCC-CC-CCCCccEEEcCCCCCcccccC-cC
Q 003011 182 CMTNLRMLKFYVPKLSKLSDVKVHLHNG-LDYLSDELRYLHWHGYPLKTLPS-NF-SPENLIELNLPYSKVEQMWEG-KK 257 (857)
Q Consensus 182 ~l~~Lr~L~l~~n~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~l~~l~~~-~~ 257 (857)
.+.+++.|++.+|. ...+|.. +..+ ++|++|++++|.+..+|. .| .+++|++|+|++|.++.++.. ++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 35788888888875 3445554 3445 589999999999888865 55 888999999999998887654 58
Q ss_pred CCCCccEEEccCCCCCccCC-C-CCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEE
Q 003011 258 ESFKLKWIDLHHCQYLIRFP-D-PLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITL 335 (857)
Q Consensus 258 ~l~~L~~L~Ls~~~~l~~lp-~-l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L 335 (857)
.+++|++|+|++|.+. .+| . +.++++|++|+|++|...+..|..++.+++|++|++++| .++.++ ...+++|+.|
T Consensus 121 ~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~l~~L~~L 197 (597)
T 3oja_B 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD-LSLIPSLFHA 197 (597)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC-GGGCTTCSEE
T ss_pred CCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC-hhhhhhhhhh
Confidence 8999999999998755 454 3 688899999999998887777778889999999999885 444443 2367888999
Q ss_pred EcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccc
Q 003011 336 DFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFP 415 (857)
Q Consensus 336 ~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~ 415 (857)
++++|. +..++ ...+|+.|++++|.+..+|..+ .++|+.|++++|...+ +..+..+++|+.|+|++|.+.+..|
T Consensus 198 ~l~~n~-l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 198 NVSYNL-LSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp ECCSSC-CSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hcccCc-ccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 998874 33332 3347889999999998887654 3689999999987765 3568889999999999998888888
Q ss_pred cccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCC
Q 003011 416 EITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLR 495 (857)
Q Consensus 416 ~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 495 (857)
..+..+++|+.|++++|.++.+|... ..+++|+.|+|++|.+..+|..++.+++|+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~------------------------~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~ 327 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYG------------------------QPIPTLKVLDLSHNHLLHVERNQPQFDRLE 327 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSS------------------------SCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred HHhcCccCCCEEECCCCCCCCCCccc------------------------ccCCCCcEEECCCCCCCccCcccccCCCCC
Confidence 88999999999999999888776543 347888999999998888888888888999
Q ss_pred eeeCCCCcceeccccccCCCCCcEEeccccccc
Q 003011 496 TLDLRGNNFVSLPASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 496 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l 528 (857)
.|+|++|.+..+| +..+++|+.|+|++|+..
T Consensus 328 ~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 328 NLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred EEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 9999999888776 677888899999888854
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=269.20 Aligned_cols=307 Identities=16% Similarity=0.119 Sum_probs=253.7
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
-+.++.++..++.+|..+ ..+|++|+|++|+++.++ ..+..+++|++|+|++|.+....| .+.++++|++|+|++|.
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 457888888999999876 468999999999999885 678999999999999998766666 69999999999999987
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCccccc---ccCcceEEecCccceecCcc-
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQF---SGNIKQLYLCGTAIEEVPSS- 369 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~---~~~L~~L~L~~~~l~~lp~~- 369 (857)
.....+..++++++|++|+|++|......|..+ .+++|+.|++++|......+.. ..+|+.|++++|.++.+|..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 765555678999999999999976555555555 8999999999998654433333 34788999999999988764
Q ss_pred ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCC
Q 003011 370 VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSS 449 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~ 449 (857)
+..+++|+.|++++|......+..+..+++|+.|++++|...+.+|.......+|+.|++++|.++.+|...
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-------- 243 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA-------- 243 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--------
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--------
Confidence 788999999999999887777778889999999999999888888877777779999999999888776432
Q ss_pred cceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcceec-cccccCCCCCcEEecccccc
Q 003011 450 IANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFVSL-PASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 450 L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~c~~ 527 (857)
+.++++|+.|+|++|.+.+++ ..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|..
T Consensus 244 ---------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 244 ---------------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp ---------------HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ---------------hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 347899999999999999955 5689999999999999998865 67889999999999999976
Q ss_pred cccCCCC---CCCcceeeccccc
Q 003011 528 LQSLPEL---PPSLILLEARNCK 547 (857)
Q Consensus 528 l~~lp~l---~~sL~~L~i~~C~ 547 (857)
....+.. .++|+.|++++++
T Consensus 309 ~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 309 TTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SCCCGGGBSCGGGCCEEECCSSC
T ss_pred ceeCHhHcCCCcccCEEEccCCC
Confidence 5533322 3577888887775
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=4.7e-27 Score=278.05 Aligned_cols=301 Identities=13% Similarity=0.078 Sum_probs=251.9
Q ss_pred CCeeEEEEeCCCCCCCCCCC--CCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC-CCCCCCccceeec
Q 003011 215 DELRYLHWHGYPLKTLPSNF--SPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICL 290 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L 290 (857)
.+++.|+++++.+..+|..+ .+++|++|+|++|.++.++. .+..+++|++|+|++|.+....| .++++++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 58999999999999999875 89999999999999998874 88999999999999999766555 4799999999999
Q ss_pred cCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCcc
Q 003011 291 SDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSS 369 (857)
Q Consensus 291 ~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~ 369 (857)
++|......+..++.+++|++|+|++|......|..+ .+++|+.|++++|.....-+..+.+|+.|++++|.+..++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-- 208 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-- 208 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc--
Confidence 9987765444556999999999999975544445445 8999999999998655544455678999999999888753
Q ss_pred ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCC
Q 003011 370 VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSS 449 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~ 449 (857)
..++|+.|++++|..... +..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.++.++...
T Consensus 209 --~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~-------- 273 (597)
T 3oja_B 209 --IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP-------- 273 (597)
T ss_dssp --CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG--------
T ss_pred --CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH--------
Confidence 356899999999976543 3322 3789999999998876 367889999999999999988664322
Q ss_pred cceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccc
Q 003011 450 IANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 450 L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 529 (857)
+.++++|+.|+|++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+...
T Consensus 274 ---------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 274 ---------------FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp ---------------GTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC
T ss_pred ---------------hcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC
Confidence 45789999999999999999998899999999999999999999999999999999999999765
Q ss_pred cCCCCCCCcceeeccccc
Q 003011 530 SLPELPPSLILLEARNCK 547 (857)
Q Consensus 530 ~lp~l~~sL~~L~i~~C~ 547 (857)
.-+...++|+.|++++|+
T Consensus 339 ~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCTTCCCSEEECCSSC
T ss_pred cChhhcCCCCEEEeeCCC
Confidence 544566788888888875
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=2.7e-26 Score=261.83 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=127.5
Q ss_pred hcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCC
Q 003011 180 FACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKES 259 (857)
Q Consensus 180 f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l 259 (857)
+.++++|+.|++++|.+. .+| ++..+ ++|++|++++|.++.+| ...+++|++|++++|.++.++ +..+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~-------~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSIT-------DMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp HHHHTTCCEEECCSSCCC-------CCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred hhHcCCCCEEEccCCCcc-------cCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCC
Confidence 445566666666665521 123 34455 35666666666666654 115666666666666666653 5566
Q ss_pred CCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCC
Q 003011 260 FKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSD 339 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~ 339 (857)
++|++|++++|.+.. +| +..+++|++|++++|...+ ++ ++.+++|+.|++++|..++.++ ...+++|+.|++++
T Consensus 106 ~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSF 179 (457)
T ss_dssp TTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCS
T ss_pred CcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCC
Confidence 666666666665332 33 5666666666666655444 22 5566666666666655555442 22556666666666
Q ss_pred CCCCCccc-ccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcccccc
Q 003011 340 CLNLTEFP-QFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEIT 418 (857)
Q Consensus 340 ~~~l~~~p-~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l 418 (857)
|. +..+| ....+|+.|++++|.++.++ ++.+++|+.|++++|...+ +| +..+++|+.|++++|.+.+.. +
T Consensus 180 n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~ 250 (457)
T 3bz5_A 180 NK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---V 250 (457)
T ss_dssp SC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred Cc-cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---H
Confidence 53 22233 11235666666666666652 5566666666666665544 44 556666666666666555432 3
Q ss_pred CCCCCCCEEeccCCccc
Q 003011 419 ETMECLEYFSLASTTIQ 435 (857)
Q Consensus 419 ~~l~~L~~L~L~~n~i~ 435 (857)
+.+++|+.|++++|.++
T Consensus 251 ~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLL 267 (457)
T ss_dssp TTCTTCCEEECTTCCCS
T ss_pred HHCCCCCEEeccCCCCC
Confidence 34555555555554443
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=1.1e-26 Score=276.87 Aligned_cols=372 Identities=20% Similarity=0.203 Sum_probs=233.3
Q ss_pred eecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCC-C-CCCCccEE
Q 003011 165 LDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSN-F-SPENLIEL 242 (857)
Q Consensus 165 L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L 242 (857)
||++.+....+.+.+|.++++|++|++++|. +....++.|..+ ++|++|++++|+++.+|.. | ++.+|++|
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~------i~~i~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCE------IQTIEDGAYQSL-SHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCC------CCEECTTTTTTC-TTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCc------CCCcChhHhcCC-CCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 4555555567788899999999999999998 344445567778 5899999999999999764 5 89999999
Q ss_pred EcCCCCCccccc-CcCCCCCccEEEccCCCCCc-cCC-CCCCCCccceeeccCCccCCccCCcccCCCCCc----EEecc
Q 003011 243 NLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLI-RFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLS----ILCLQ 315 (857)
Q Consensus 243 ~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~-~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~----~L~L~ 315 (857)
+|++|+++.++. .++++++|++|+|++|.+.. .+| .+..+++|++|++++|...+..+..+..+.+++ .++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999999999875 47999999999999998644 345 467899999999999877665555544333322 22222
Q ss_pred CCCCCcccCCCC--------------------------------------------------------------------
Q 003011 316 GCESLRRFPSNI-------------------------------------------------------------------- 327 (857)
Q Consensus 316 ~c~~l~~lp~~~-------------------------------------------------------------------- 327 (857)
.+ .+..++...
T Consensus 210 ~n-~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 210 LN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TC-CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred cC-cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 21 111111000
Q ss_pred ---------------CCCCCcEEEcCCCCCCCccc--ccccCcceEEecCccceecCc--------------------cc
Q 003011 328 ---------------HFRSPITLDFSDCLNLTEFP--QFSGNIKQLYLCGTAIEEVPS--------------------SV 370 (857)
Q Consensus 328 ---------------~l~~L~~L~Ls~~~~l~~~p--~~~~~L~~L~L~~~~l~~lp~--------------------~l 370 (857)
.+.+++.+.+.++... .++ ....+++.|++.++.+..++. ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccc-cccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0111111111111100 000 011134444444433332211 12
Q ss_pred cCCCcceEEEccCccccc-------------------------cccccccCCCCCCEeeccCCCCCCccc-cccCCCCCC
Q 003011 371 ECLTELAELYMRQCTRLK-------------------------SISSRICKLKSLHLLSLDDCCRLERFP-EITETMECL 424 (857)
Q Consensus 371 ~~l~~L~~L~L~~~~~l~-------------------------~lp~~l~~l~~L~~L~Ls~~~~~~~~~-~~l~~l~~L 424 (857)
..+++|+.|++++|.... ..+..+..+++|+.+++.++......+ ..+..+.++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 245566666666554321 122334455666666666555444333 356667777
Q ss_pred CEEeccCCccccCCCCcccccCcCCcceeeccccCC---cCC-CCCCCCCCcEEEeeCCCCccC-CCcCCCCCCCCeeeC
Q 003011 425 EYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGL---ILP-PLPGLSSLTGLNLSFRNITEI-PKDIGCLSSLRTLDL 499 (857)
Q Consensus 425 ~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~---~~~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 499 (857)
+.++++.|.+...+..... ..+.++.|+++.+.. ..| .+..+++|++|+|++|+++++ |..++++++|+.|+|
T Consensus 448 ~~l~ls~n~l~~~~~~~~~--~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFN--GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp CEEECTTSCCEECCTTTTT--TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccc--cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 7777777777765554433 346777777754431 122 377788888888888888874 567788888888888
Q ss_pred CCCcceecc-ccccCCCCCcEEecccccccccCCC----CCCCcceeeccccc
Q 003011 500 RGNNFVSLP-ASIKQFTQMEELILSNCNLLQSLPE----LPPSLILLEARNCK 547 (857)
Q Consensus 500 s~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~----l~~sL~~L~i~~C~ 547 (857)
++|+|+.++ ..+..+++|+.|+|++|+.....|+ ++++|+.|++++++
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 888887665 4467788888888888877666553 34677777777664
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.1e-26 Score=252.20 Aligned_cols=301 Identities=17% Similarity=0.169 Sum_probs=248.2
Q ss_pred ccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeec
Q 003011 211 DYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICL 290 (857)
Q Consensus 211 ~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L 290 (857)
..+ ++|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|. +..+|.+.++++|++|++
T Consensus 41 ~~l-~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EEL-ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHH-TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred hhc-ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEEC
Confidence 345 5899999999999999874489999999999999999987 9999999999999997 455788999999999999
Q ss_pred cCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCccc-ccccCcceEEecCccceecCcc
Q 003011 291 SDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFP-QFSGNIKQLYLCGTAIEEVPSS 369 (857)
Q Consensus 291 ~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p-~~~~~L~~L~L~~~~l~~lp~~ 369 (857)
++|.... ++. +..+++|+.|++++|.....++....+++|+.|++++|......+ ....+|+.|++++|.+..++.
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 194 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP- 194 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-
Confidence 9987654 444 889999999999999888877775589999999999986433222 223478899999998888876
Q ss_pred ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCC
Q 003011 370 VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSS 449 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~ 449 (857)
+..+++|+.|++++|......+ +..+++|+.|++++|.+....+ +..+++|+.|++++|.++.++.
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------- 260 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA---------- 260 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG----------
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChh----------
Confidence 7888899999999887665444 7788899999999887766444 7888899999999888876532
Q ss_pred cceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcce-eccccccCCCCCcEEeccccccc
Q 003011 450 IANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 450 L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~c~~l 528 (857)
+..+++|+.|++++|.+++++ .+..+++|+.|++++|.++ ..|..+..+++|+.|++++|+..
T Consensus 261 ---------------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 261 ---------------VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ---------------GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ---------------HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 457899999999999999984 5788999999999999988 45567899999999999999976
Q ss_pred ccCC-CCCCCcceeeccccc
Q 003011 529 QSLP-ELPPSLILLEARNCK 547 (857)
Q Consensus 529 ~~lp-~l~~sL~~L~i~~C~ 547 (857)
...| ...++|+.|++++|+
T Consensus 325 ~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 325 DIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CCGGGGGCTTCSEESSSCC-
T ss_pred cccChhhhhccceeehhhhc
Confidence 6555 334678888888774
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=9.8e-26 Score=257.16 Aligned_cols=296 Identities=17% Similarity=0.116 Sum_probs=215.2
Q ss_pred ccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCcccee
Q 003011 209 GLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERI 288 (857)
Q Consensus 209 ~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L 288 (857)
.+..+ ++|++|++++|.++.+|....+++|++|+|++|+++.+| +..+++|++|++++|.+.. +| +.++++|++|
T Consensus 37 ~~~~l-~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQL-ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYL 111 (457)
T ss_dssp EHHHH-TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEE
T ss_pred ChhHc-CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEE
Confidence 45556 589999999999999984339999999999999999986 8899999999999998544 55 8999999999
Q ss_pred eccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccc-cccCcceEEecCccceecC
Q 003011 289 CLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQ-FSGNIKQLYLCGTAIEEVP 367 (857)
Q Consensus 289 ~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~-~~~~L~~L~L~~~~l~~lp 367 (857)
++++|...+ +| ++.+++|++|++++| .++.++ ...+++|+.|++++|..++.++- ...+|+.|++++|.++.+|
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 999987665 44 899999999999996 455554 33889999999999977766532 2347888888888888887
Q ss_pred ccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCc
Q 003011 368 SSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILP 447 (857)
Q Consensus 368 ~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp 447 (857)
+..+++|+.|++++|...+. .+..+++|+.|++++|.+.+ +| +..+++|+.|++++|.++.+|..
T Consensus 187 --l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~------- 251 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS------- 251 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT-------
T ss_pred --cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH-------
Confidence 77888888888888876553 37778888888888887766 45 77788888888888888776532
Q ss_pred CCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCc-ceeccccccCCCCCcEEeccccc
Q 003011 448 SSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNN-FVSLPASIKQFTQMEELILSNCN 526 (857)
Q Consensus 448 ~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~c~ 526 (857)
.+++|+.|++++| +|+.|++++|. +..+| +..+++|+.|++++|+
T Consensus 252 -------------------~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 252 -------------------TLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT 297 (457)
T ss_dssp -------------------TCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred -------------------HCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence 3445555554443 34444555554 22444 3445566666666666
Q ss_pred ccccCCCCCCCcceeecccccCCCcccCcchhhhhhh
Q 003011 527 LLQSLPELPPSLILLEARNCKQLQSLPELSSYLEELD 563 (857)
Q Consensus 527 ~l~~lp~l~~sL~~L~i~~C~~L~~l~~~~~~l~~L~ 563 (857)
.++.+|.-.++|+.|++++|++|+.+....+.++.++
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~ 334 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD 334 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCCcccccc
Confidence 5555555445555556666655555554444444333
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=5.3e-25 Score=240.64 Aligned_cols=283 Identities=16% Similarity=0.144 Sum_probs=154.3
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCC-CC-CCCCccEEEcCCCCCccc-ccCcCCCC
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPS-NF-SPENLIELNLPYSKVEQM-WEGKKESF 260 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~l~~l-~~~~~~l~ 260 (857)
.+|+.++++++.+ ..+|..+ ++.|++|++++|.++.+|. .| .+++|++|+|++|.++.+ |..+..++
T Consensus 31 c~l~~l~~~~~~l-------~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (330)
T 1xku_A 31 CHLRVVQCSDLGL-------EKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV 100 (330)
T ss_dssp EETTEEECTTSCC-------CSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred CCCeEEEecCCCc-------cccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCC
Confidence 3566666655541 1233322 2456666666666666644 34 566666666666666655 45566666
Q ss_pred CccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCc--ccCCCC-CCCCCcEEE
Q 003011 261 KLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLR--RFPSNI-HFRSPITLD 336 (857)
Q Consensus 261 ~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~ 336 (857)
+|++|+|++|.+ ..+| .+. ++|++|++++|......+..++.+++|+.|++++|.... ..+..+ .+++
T Consensus 101 ~L~~L~Ls~n~l-~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~----- 172 (330)
T 1xku_A 101 KLERLYLSKNQL-KELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK----- 172 (330)
T ss_dssp TCCEEECCSSCC-SBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-----
T ss_pred CCCEEECCCCcC-CccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCC-----
Confidence 666666666653 2444 222 556666666655554444455556666666665543211 111111 3333
Q ss_pred cCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcccc
Q 003011 337 FSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPE 416 (857)
Q Consensus 337 Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~ 416 (857)
|+.|++++|.++.+|..+. ++|++|++++|...+..|..+..+++|+.|++++|.+....+.
T Consensus 173 ----------------L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 234 (330)
T 1xku_A 173 ----------------LSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234 (330)
T ss_dssp ----------------CCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred ----------------cCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh
Confidence 4444444445555554432 5666666666655555555566666666666666666555555
Q ss_pred ccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCC------
Q 003011 417 ITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIG------ 489 (857)
Q Consensus 417 ~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~------ 489 (857)
.+..+++|+.|++++|.++.+|..+ ..+++|++|++++|.+++++. .+.
T Consensus 235 ~~~~l~~L~~L~L~~N~l~~lp~~l------------------------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 235 SLANTPHLRELHLNNNKLVKVPGGL------------------------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNT 290 (330)
T ss_dssp TGGGSTTCCEEECCSSCCSSCCTTT------------------------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCT
T ss_pred hccCCCCCCEEECCCCcCccCChhh------------------------ccCCCcCEEECCCCcCCccChhhcCCccccc
Confidence 5666666666666666666555432 245666666666666666442 221
Q ss_pred CCCCCCeeeCCCCcce---eccccccCCCCCcEEeccccc
Q 003011 490 CLSSLRTLDLRGNNFV---SLPASIKQFTQMEELILSNCN 526 (857)
Q Consensus 490 ~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~c~ 526 (857)
..++|+.|++++|++. ..|..+..+++|+.++|++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2356677777777654 233556667777777777663
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.9e-25 Score=242.94 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=165.8
Q ss_pred CccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCC-CC-CCCCccEEEcCCCCCccc-ccCcCCCCC
Q 003011 185 NLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPS-NF-SPENLIELNLPYSKVEQM-WEGKKESFK 261 (857)
Q Consensus 185 ~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~Ls~n~l~~l-~~~~~~l~~ 261 (857)
+|+.++++++.+ ..+|..+ +++|++|++++|.++.+|. .| .+++|++|+|++|.++.+ |..+..+++
T Consensus 34 ~l~~l~~~~~~l-------~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGL-------KAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp ETTEEECCSSCC-------SSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred cCCEEECCCCCc-------cccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 456666655542 1233332 2356666666666655533 34 556666666666666554 445555666
Q ss_pred ccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCc--ccCCCCCCCCCcEEEcC
Q 003011 262 LKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLR--RFPSNIHFRSPITLDFS 338 (857)
Q Consensus 262 L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~--~lp~~~~l~~L~~L~Ls 338 (857)
|++|+|++|.+. .+| .+. ++|++|++++|......+..++.+++|+.|++++|.... ..|..+..
T Consensus 104 L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--------- 171 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG--------- 171 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS---------
T ss_pred CCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC---------
Confidence 666666665532 344 222 556666665555444333345555555555555532211 11111110
Q ss_pred CCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcccccc
Q 003011 339 DCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEIT 418 (857)
Q Consensus 339 ~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l 418 (857)
. +|+.|++++|.++.+|..+. ++|++|++++|......+..+..+++|+.|++++|.+....+..+
T Consensus 172 -----------l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 172 -----------L-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp -----------C-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred -----------C-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 1 45566666666666666543 677777777777666666677777778888888777777666677
Q ss_pred CCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCCC------C
Q 003011 419 ETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIGC------L 491 (857)
Q Consensus 419 ~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~------l 491 (857)
..+++|+.|++++|.++.+|..+. .+++|+.|++++|.+++++. .+.. .
T Consensus 238 ~~l~~L~~L~L~~N~l~~lp~~l~------------------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 293 (332)
T 2ft3_A 238 SFLPTLRELHLDNNKLSRVPAGLP------------------------DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR 293 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTGG------------------------GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSS
T ss_pred hCCCCCCEEECCCCcCeecChhhh------------------------cCccCCEEECCCCCCCccChhHcccccccccc
Confidence 777777778877777777666432 46777777777777777543 2322 4
Q ss_pred CCCCeeeCCCCcce---eccccccCCCCCcEEeccccc
Q 003011 492 SSLRTLDLRGNNFV---SLPASIKQFTQMEELILSNCN 526 (857)
Q Consensus 492 ~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~c~ 526 (857)
++|+.|++++|++. ..|..+..+++|+.|++++|+
T Consensus 294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 66778888888765 344557777888888887775
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=2.3e-24 Score=235.54 Aligned_cols=270 Identities=15% Similarity=0.144 Sum_probs=215.5
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC-CCCCccEEEcCCCCCcccccCcCCCCC
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF-SPENLIELNLPYSKVEQMWEGKKESFK 261 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 261 (857)
++|+.|++++|.+ ....+..+..+ ++|++|++++|.+..+ |..| .+++|++|++++|.++.+|..+. ++
T Consensus 52 ~~l~~L~L~~n~i------~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKI------TEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp TTCCEEECCSSCC------CCBCTTTTTTC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCeEEECCCCcC------CEeChhhhccC-CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 6899999999983 33334467777 5999999999999988 7777 89999999999999999988765 79
Q ss_pred ccEEEccCCCCCccCC-CCCCCCccceeeccCCccCC--ccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcC
Q 003011 262 LKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLP--CIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFS 338 (857)
Q Consensus 262 L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~--~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls 338 (857)
|++|++++|.+....+ .+.++++|++|++++|.... ..+..++.+++|+.|++++| .++.+|.... +
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~-~-------- 192 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP-P-------- 192 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC-T--------
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc-c--------
Confidence 9999999998654444 48899999999999988753 66788999999999999985 4555554321 3
Q ss_pred CCCCCCcccccccCcceEEecCccceec-CccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccc
Q 003011 339 DCLNLTEFPQFSGNIKQLYLCGTAIEEV-PSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEI 417 (857)
Q Consensus 339 ~~~~l~~~p~~~~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~ 417 (857)
+|++|++++|.++.+ |..+..+++|+.|++++|...+..+..+..+++|+.|++++|.+. .+|..
T Consensus 193 -------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 258 (330)
T 1xku_A 193 -------------SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258 (330)
T ss_dssp -------------TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred -------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence 555666666667765 456888999999999999887777778899999999999999766 77888
Q ss_pred cCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc---CCCcCCCCCCC
Q 003011 418 TETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE---IPKDIGCLSSL 494 (857)
Q Consensus 418 l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L 494 (857)
+..+++|+.|++++|.++.++...+... ......++|+.|++++|.+.. .|..+.++++|
T Consensus 259 l~~l~~L~~L~l~~N~i~~~~~~~f~~~-----------------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 259 LADHKYIQVVYLHNNNISAIGSNDFCPP-----------------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTSSSCS-----------------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred hccCCCcCEEECCCCcCCccChhhcCCc-----------------ccccccccccceEeecCcccccccCccccccccce
Confidence 9999999999999999998887654210 002235789999999999875 45788999999
Q ss_pred CeeeCCCCc
Q 003011 495 RTLDLRGNN 503 (857)
Q Consensus 495 ~~L~Ls~n~ 503 (857)
+.++|++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 999999984
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.2e-24 Score=235.97 Aligned_cols=278 Identities=18% Similarity=0.211 Sum_probs=158.6
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCC
Q 003011 216 ELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDC 293 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~ 293 (857)
+|+.++++++.++.+|..+ .++|++|++++|.++.++ ..+..+++|++|+|++|.+....| .+.++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3555555555555555444 245555555555555443 244555555555555554333323 3444455555555444
Q ss_pred ccCCccCCcccCCCCCcEEeccCCCCCcccCCC-C-CCCCCcEEEcCCCCCCCcccccccCcceEEecCcccee---cCc
Q 003011 294 IDLPCIPSSIENFNNLSILCLQGCESLRRFPSN-I-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEE---VPS 368 (857)
Q Consensus 294 ~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~---lp~ 368 (857)
... .+|..+. ++|++|++++| .++.+|.. + .++ +|+.|++++|.++. .|.
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~---------------------~L~~L~l~~n~l~~~~~~~~ 167 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLR---------------------NMNCIEMGGNPLENSGFEPG 167 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCS---------------------SCCEEECCSCCCBGGGSCTT
T ss_pred cCC-ccCcccc--ccCCEEECCCC-ccCccCHhHhCCCc---------------------cCCEEECCCCccccCCCCcc
Confidence 322 3333332 34444444442 22222221 1 233 34444444444432 344
Q ss_pred cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcC
Q 003011 369 SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPS 448 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~ 448 (857)
.+..+ +|+.|++++|.... +|..+. ++|+.|++++|.+....+..+..+++|+.|++++|.++.++...
T Consensus 168 ~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~------- 236 (332)
T 2ft3_A 168 AFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS------- 236 (332)
T ss_dssp SSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-------
T ss_pred cccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH-------
Confidence 45555 77777777776543 554443 67777788777777766677777777777887777777665432
Q ss_pred CcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceecccc-ccC------CCCCcEEe
Q 003011 449 SIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPAS-IKQ------FTQMEELI 521 (857)
Q Consensus 449 ~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~------l~~L~~L~ 521 (857)
+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|.. +.. .++|+.|+
T Consensus 237 ----------------~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 237 ----------------LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp ----------------GGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred ----------------hhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 3357888888888888888888888888888888888888877643 222 46788888
Q ss_pred ccccccc--ccCCC---CCCCcceeecccc
Q 003011 522 LSNCNLL--QSLPE---LPPSLILLEARNC 546 (857)
Q Consensus 522 L~~c~~l--~~lp~---l~~sL~~L~i~~C 546 (857)
+++|+.. ...|. ..++|+.|++++|
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred eecCcccccccCcccccccchhhhhhcccc
Confidence 8888765 22222 2245555555554
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.2e-25 Score=241.65 Aligned_cols=249 Identities=16% Similarity=0.189 Sum_probs=168.9
Q ss_pred CCeeEEEEeCCCCC---CCCCCC-CCCCccEEEcCC-CCCc-ccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccce
Q 003011 215 DELRYLHWHGYPLK---TLPSNF-SPENLIELNLPY-SKVE-QMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLER 287 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~---~lp~~~-~l~~L~~L~Ls~-n~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~ 287 (857)
.+++.|+++++.+. .+|..+ .+++|++|+|++ |.+. .+|..+..+++|++|+|++|.+...+| .+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46778888887776 466666 677777777773 6665 566666777777777777776555555 4666666666
Q ss_pred eeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecC
Q 003011 288 ICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVP 367 (857)
Q Consensus 288 L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp 367 (857)
|++++|...+.+|..++.+++|++|++++|.... .+|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-------------------------------------------~~p 166 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISG-------------------------------------------AIP 166 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE-------------------------------------------ECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccC-------------------------------------------cCC
Confidence 6666666665666666666666666665542221 344
Q ss_pred ccccCCC-cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccC
Q 003011 368 SSVECLT-ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRIL 446 (857)
Q Consensus 368 ~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~l 446 (857)
..+..++ +|+.|++++|...+.+|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.++..+..
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------ 239 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK------ 239 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG------
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc------
Confidence 4555555 666666666666666666666665 77777777776666677777777777777777776633322
Q ss_pred cCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcce-eccccccCCCCCcEEeccc
Q 003011 447 PSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFV-SLPASIKQFTQMEELILSN 524 (857)
Q Consensus 447 p~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 524 (857)
+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|.. ..+++|+.|++++
T Consensus 240 ------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 240 ------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300 (313)
T ss_dssp ------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCS
T ss_pred ------------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcC
Confidence 2356788888888888874 7788888888888888888877 66654 7788888888888
Q ss_pred ccccccCC
Q 003011 525 CNLLQSLP 532 (857)
Q Consensus 525 c~~l~~lp 532 (857)
|+.+...|
T Consensus 301 N~~lc~~p 308 (313)
T 1ogq_A 301 NKCLCGSP 308 (313)
T ss_dssp SSEEESTT
T ss_pred CCCccCCC
Confidence 87655433
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.1e-24 Score=248.20 Aligned_cols=261 Identities=18% Similarity=0.185 Sum_probs=159.1
Q ss_pred CccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccE
Q 003011 185 NLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKW 264 (857)
Q Consensus 185 ~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 264 (857)
+++.|++++|.+ ..+|..+. ++|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+++|++
T Consensus 41 ~l~~L~ls~n~L-------~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGL-------TTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCC-------SCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred CCcEEEecCCCc-------CccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence 456666665552 13343332 356666666666665555 34556666666666555554 4455555
Q ss_pred EEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCC
Q 003011 265 IDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLT 344 (857)
Q Consensus 265 L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~ 344 (857)
|+|++|.+ ..+|. .+++|++|++++|. ++.+|.. +++|++|++++| .+.
T Consensus 106 L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~-------------------------l~~lp~~--l~~L~~L~Ls~N-~l~ 154 (622)
T 3g06_A 106 LSIFSNPL-THLPA--LPSGLCKLWIFGNQ-------------------------LTSLPVL--PPGLQELSVSDN-QLA 154 (622)
T ss_dssp EEECSCCC-CCCCC--CCTTCCEEECCSSC-------------------------CSCCCCC--CTTCCEEECCSS-CCS
T ss_pred EECcCCcC-CCCCC--CCCCcCEEECCCCC-------------------------CCcCCCC--CCCCCEEECcCC-cCC
Confidence 55555542 22333 33444444444443 3334432 355555555555 334
Q ss_pred cccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCC
Q 003011 345 EFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECL 424 (857)
Q Consensus 345 ~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L 424 (857)
.+|..+.+|+.|++++|.++.+| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|. .+++|
T Consensus 155 ~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L 223 (622)
T 3g06_A 155 SLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGL 223 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTC
T ss_pred CcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCC
Confidence 45555566677777777777766 345677777777765443 443 24667777777765543 332 24677
Q ss_pred CEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcc
Q 003011 425 EYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNF 504 (857)
Q Consensus 425 ~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l 504 (857)
+.|++++|.++.+|. .+++|+.|+|++|.++.+|. .+++|+.|+|++|.|
T Consensus 224 ~~L~Ls~N~L~~lp~---------------------------~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 224 KELIVSGNRLTSLPV---------------------------LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQL 273 (622)
T ss_dssp CEEECCSSCCSCCCC---------------------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred CEEEccCCccCcCCC---------------------------CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCC
Confidence 778888777776662 34678888888888887776 567888888888888
Q ss_pred eeccccccCCCCCcEEecccccccccCC
Q 003011 505 VSLPASIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 505 ~~lp~~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
+.+|..+..+++|+.|+|++|+.....|
T Consensus 274 ~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 274 TRLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CSCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CcCCHHHhhccccCEEEecCCCCCCcCH
Confidence 8888888888888888888888765554
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=3.5e-23 Score=246.58 Aligned_cols=360 Identities=20% Similarity=0.182 Sum_probs=261.4
Q ss_pred cCcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCC-C-
Q 003011 157 TDSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSN-F- 234 (857)
Q Consensus 157 ~~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~- 234 (857)
...++.+ |++.+....+.+++|.++++|++|++++|+ +...-+..|..+ .+|++|++++|.++.+|.. |
T Consensus 75 l~~L~~L--~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~------l~~l~~~~f~~L-~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 75 FPELQVL--DLSRCEIQTIEDGAYQSLSHLSTLILTGNP------IQSLALGAFSGL-SSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp CTTCCEE--ECTTCCCCEECTTTTTTCTTCCEEECTTCC------CCEECGGGGTTC-TTCCEEECTTSCCCCSTTCCCT
T ss_pred CCCCCEE--ECCCCcCCCcChhHhcCCCCCCEEEccCCc------CCCCCHHHhcCC-CCCCEEECCCCcCCCCChhhhh
Confidence 3445554 445554556788999999999999999998 333334456777 5999999999999999764 6
Q ss_pred CCCCccEEEcCCCCCcc--cccCcCCCCCccEEEccCCCCCccCC-CCCC---------------------------CCc
Q 003011 235 SPENLIELNLPYSKVEQ--MWEGKKESFKLKWIDLHHCQYLIRFP-DPLE---------------------------TPN 284 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~---------------------------l~~ 284 (857)
++++|++|+|++|.++. +|..+..+++|++|+|++|++....| ++.. ...
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~ 225 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 225 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence 89999999999999985 56778999999999999997643322 1111 112
Q ss_pred cceeeccCCccCC----------------------------------------------------------cc-------
Q 003011 285 LERICLSDCIDLP----------------------------------------------------------CI------- 299 (857)
Q Consensus 285 L~~L~L~~~~~~~----------------------------------------------------------~~------- 299 (857)
++.|++.++.... ..
T Consensus 226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 305 (635)
T 4g8a_A 226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL 305 (635)
T ss_dssp EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence 2233333221100 00
Q ss_pred ---------------CCcccCCCCCcEEeccCCCCC--------------------cccCCCCCCCCCcEEEcCCCCCCC
Q 003011 300 ---------------PSSIENFNNLSILCLQGCESL--------------------RRFPSNIHFRSPITLDFSDCLNLT 344 (857)
Q Consensus 300 ---------------p~~i~~l~~L~~L~L~~c~~l--------------------~~lp~~~~l~~L~~L~Ls~~~~l~ 344 (857)
...+....+|+.|++.+|... ...+....+++|+.|++++|....
T Consensus 306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 001223345666666554321 112222357788888888775432
Q ss_pred cc--cc---cccCcceEEecCccceecCccccCCCcceEEEccCcccccccc-ccccCCCCCCEeeccCCCCCCcccccc
Q 003011 345 EF--PQ---FSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSIS-SRICKLKSLHLLSLDDCCRLERFPEIT 418 (857)
Q Consensus 345 ~~--p~---~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~~~~~~~~l 418 (857)
.. +. ...+++.|++..+.+..++..+..+++|+.+++..+......+ ..+..+++|+.++++.|......+..+
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 21 11 2337888899888888888888899999999999887766554 457889999999999999998888999
Q ss_pred CCCCCCCEEeccCCccc-c-CCCCcccccCcCCcceeeccccCCc-CC--CCCCCCCCcEEEeeCCCCccCC-CcCCCCC
Q 003011 419 ETMECLEYFSLASTTIQ-E-QPSSNEDRILPSSIANWSYGCRGLI-LP--PLPGLSSLTGLNLSFRNITEIP-KDIGCLS 492 (857)
Q Consensus 419 ~~l~~L~~L~L~~n~i~-~-lp~~~~~~~lp~~L~~L~l~~~~~~-~~--~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~ 492 (857)
..+++|+.|++++|.+. . .|..+.. + ++|+.|+++.+.+. ++ .+.++++|++|+|++|++++++ ..+..++
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~--l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 542 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTE--L-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 542 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTT--C-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCT
T ss_pred ccchhhhhhhhhhcccccccCchhhhh--c-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCC
Confidence 99999999999999754 2 4444433 3 78999999766553 32 2899999999999999999965 5689999
Q ss_pred CCCeeeCCCCcceec-cccccCC-CCCcEEeccccccc
Q 003011 493 SLRTLDLRGNNFVSL-PASIKQF-TQMEELILSNCNLL 528 (857)
Q Consensus 493 ~L~~L~Ls~n~l~~l-p~~l~~l-~~L~~L~L~~c~~l 528 (857)
+|+.|+|++|+|+.+ |..+..+ ++|+.|+|++|+..
T Consensus 543 ~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 543 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999866 4567777 68999999999854
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.3e-24 Score=235.64 Aligned_cols=169 Identities=18% Similarity=0.238 Sum_probs=145.6
Q ss_pred ccce-ecCccccCCCcceEEEccCccccccccccccCCC-CCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCC
Q 003011 361 TAIE-EVPSSVECLTELAELYMRQCTRLKSISSRICKLK-SLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQP 438 (857)
Q Consensus 361 ~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~-~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp 438 (857)
|.+. .+|..+..+++|++|++++|...+.+|..+..++ +|+.|++++|.+.+..|..+..+. |+.|++++|.++..+
T Consensus 135 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence 3444 4567788899999999999999889999999998 999999999999989999999987 999999999998654
Q ss_pred CCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcce-eccccccCCCCC
Q 003011 439 SSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFV-SLPASIKQFTQM 517 (857)
Q Consensus 439 ~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 517 (857)
... +..+++|+.|+|++|.++..+..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus 214 ~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 214 SVL-----------------------FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp GGG-----------------------CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred CHH-----------------------HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 322 45789999999999999986666899999999999999998 899999999999
Q ss_pred cEEecccccccccCCCC--CCCcceeecccccCCCccc
Q 003011 518 EELILSNCNLLQSLPEL--PPSLILLEARNCKQLQSLP 553 (857)
Q Consensus 518 ~~L~L~~c~~l~~lp~l--~~sL~~L~i~~C~~L~~l~ 553 (857)
+.|+|++|+..+.+|.. .++|+.|++.+++.+...|
T Consensus 271 ~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 99999999999889865 3678888888887665544
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=9e-24 Score=233.18 Aligned_cols=272 Identities=16% Similarity=0.136 Sum_probs=202.5
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
....+.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|+|++|.+....| .+.++++|++|++++|.
T Consensus 33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3447778888888887663 488899999988888875 67888899999998887665555 48888889999998877
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCC--CC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceec-Cccc
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPS--NI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEV-PSSV 370 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~l-p~~l 370 (857)
.....+..++.+++|++|++++| .++.+|. .+ .+++|++|++++|.. +..+ +..+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~--------------------~~~~~~~~~ 170 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDT--------------------FTKIQRKDF 170 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSS--------------------CCEECTTTT
T ss_pred CCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcc--------------------ccccCHHHc
Confidence 66544444788888888888885 4556665 22 566666666666532 3333 3456
Q ss_pred cCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCc
Q 003011 371 ECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSI 450 (857)
Q Consensus 371 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L 450 (857)
..+++|++|++++|...+..|..+..+++|+.|++++|......+..+..+++|+.|++++|.++..+.....
T Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~------- 243 (353)
T 2z80_A 171 AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS------- 243 (353)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------
T ss_pred cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-------
Confidence 7788888888888877777777888888888888888876544334455688899999999888766542211
Q ss_pred ceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeCCCCcceeccccc-cCCCCCcEEeccc
Q 003011 451 ANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPKDIGCLSSLRTLDLRGNNFVSLPASI-KQFTQMEELILSN 524 (857)
Q Consensus 451 ~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~ 524 (857)
.....+.++.++++++.+.+ +|..+..+++|+.|+|++|.++.+|..+ ..+++|++|+|++
T Consensus 244 -------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 244 -------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp ----------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -------------cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 12345678888888888775 6778889999999999999999999875 8899999999999
Q ss_pred cccccc
Q 003011 525 CNLLQS 530 (857)
Q Consensus 525 c~~l~~ 530 (857)
|+....
T Consensus 311 N~~~~~ 316 (353)
T 2z80_A 311 NPWDCS 316 (353)
T ss_dssp SCBCCC
T ss_pred CCccCc
Confidence 986543
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.2e-23 Score=227.45 Aligned_cols=228 Identities=20% Similarity=0.274 Sum_probs=193.1
Q ss_pred CCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCC
Q 003011 182 CMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESF 260 (857)
Q Consensus 182 ~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~ 260 (857)
...+++.|++++|.+ ..+|..+..+ ++|++|++++|.+..+|..+ .+++|++|+|++|.++.+|..+..++
T Consensus 79 ~~~~l~~L~L~~n~l-------~~lp~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 79 TQPGRVALELRSVPL-------PQFPDQAFRL-SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp TSTTCCEEEEESSCC-------SSCCSCGGGG-TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred cccceeEEEccCCCc-------hhcChhhhhC-CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 457899999999883 2678888887 59999999999999999988 89999999999999999999999999
Q ss_pred CccEEEccCCCCCccCC-CCC---------CCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CC
Q 003011 261 KLKWIDLHHCQYLIRFP-DPL---------ETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HF 329 (857)
Q Consensus 261 ~L~~L~Ls~~~~l~~lp-~l~---------~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l 329 (857)
+|++|+|++|.....+| .+. ++++|++|++++|... .+|..++.+++|++|++++|. +..+|..+ .+
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l 228 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAIHHL 228 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGC
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC-CCcCchhhccC
Confidence 99999999998888888 444 3899999999998665 888889999999999998854 44566555 67
Q ss_pred CCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCC
Q 003011 330 RSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCC 409 (857)
Q Consensus 330 ~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~ 409 (857)
++|+.|++++|...+ .+|..++.+++|+.|++++|...+.+|..+..+++|+.|+|++|.
T Consensus 229 ~~L~~L~Ls~n~~~~--------------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 229 PKLEELDLRGCTALR--------------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCCEEECTTCTTCC--------------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CCCCEEECcCCcchh--------------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 777777777765443 355677888999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCEEeccCCccccCCC
Q 003011 410 RLERFPEITETMECLEYFSLASTTIQEQPS 439 (857)
Q Consensus 410 ~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~ 439 (857)
..+.+|..++.+++|+.+.+..+.+..++.
T Consensus 289 ~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 289 NLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp TCCCCCGGGGGSCTTCEEECCGGGSCC---
T ss_pred chhhccHHHhhccCceEEeCCHHHHHHHhh
Confidence 999999999999999999998876665443
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.3e-22 Score=238.41 Aligned_cols=263 Identities=21% Similarity=0.241 Sum_probs=182.9
Q ss_pred EEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCc
Q 003011 160 IEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENL 239 (857)
Q Consensus 160 i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L 239 (857)
++.+.+..+.+ ..++...+ ++|+.|++++|.++ .+|. .+++|++|++++|.++.+|. .+++|
T Consensus 42 l~~L~ls~n~L--~~lp~~l~---~~L~~L~L~~N~l~-------~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L 103 (622)
T 3g06_A 42 NAVLNVGESGL--TTLPDCLP---AHITTLVIPDNNLT-------SLPA----LPPELRTLEVSGNQLTSLPV--LPPGL 103 (622)
T ss_dssp CCEEECCSSCC--SCCCSCCC---TTCSEEEECSCCCS-------CCCC----CCTTCCEEEECSCCCSCCCC--CCTTC
T ss_pred CcEEEecCCCc--CccChhhC---CCCcEEEecCCCCC-------CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCC
Confidence 44444444433 34444332 79999999999842 3444 23699999999999999998 78999
Q ss_pred cEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCC
Q 003011 240 IELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCES 319 (857)
Q Consensus 240 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~ 319 (857)
++|+|++|.++.+|. .+++|+.|++++|.+ ..+|.. +++|++|++++|... .+|. .+.+|+.|++++| .
T Consensus 104 ~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l-~~lp~~--l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N-~ 172 (622)
T 3g06_A 104 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQL-TSLPVL--PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNN-Q 172 (622)
T ss_dssp CEEEECSCCCCCCCC---CCTTCCEEECCSSCC-SCCCCC--CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS-C
T ss_pred CEEECcCCcCCCCCC---CCCCcCEEECCCCCC-CcCCCC--CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCC-C
Confidence 999999999999987 678999999999984 456642 488999999987554 3444 3467777888774 4
Q ss_pred CcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCC
Q 003011 320 LRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKS 399 (857)
Q Consensus 320 l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 399 (857)
++.+| ..+++|+.|++++|. +..+|....+|+.|++++|.++.+|. .+++
T Consensus 173 l~~l~--~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~---------------------------~~~~ 222 (622)
T 3g06_A 173 LTSLP--MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPA---------------------------LPSG 222 (622)
T ss_dssp CSCCC--CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC---------------------------CCTT
T ss_pred CCCCc--ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCC---------------------------CCCC
Confidence 55555 234556666666543 33344444444444444444444432 1355
Q ss_pred CCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCC
Q 003011 400 LHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFR 479 (857)
Q Consensus 400 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n 479 (857)
|+.|++++|.+.. +| ..+++|+.|++++|.++.+|. .+++|+.|+|++|
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---------------------------~~~~L~~L~Ls~N 271 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---------------------------LPSGLLSLSVYRN 271 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---------------------------CCTTCCEEECCSS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---------------------------ccccCcEEeCCCC
Confidence 6666666665443 34 445778888888888877665 2478899999999
Q ss_pred CCccCCCcCCCCCCCCeeeCCCCcce-ecccccc
Q 003011 480 NITEIPKDIGCLSSLRTLDLRGNNFV-SLPASIK 512 (857)
Q Consensus 480 ~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~ 512 (857)
.++.+|..+..+++|+.|+|++|.++ ..|..+.
T Consensus 272 ~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 272 QLTRLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CCCcCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 99999988999999999999999987 4444443
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.3e-23 Score=227.17 Aligned_cols=228 Identities=23% Similarity=0.288 Sum_probs=135.0
Q ss_pred CCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccC
Q 003011 215 DELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSD 292 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~ 292 (857)
.+++.|++++|.++.+|..+ .+++|++|+|++|.++.+|..+..+++|++|+|++|.+. .+| .+.++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 46788888888888887766 777777777777777777777777777777777777643 444 455555555555555
Q ss_pred CccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccC
Q 003011 293 CIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVEC 372 (857)
Q Consensus 293 ~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~ 372 (857)
|...+.+|..++. ..+.+. -....+|+.|++++|.++.+|..++.
T Consensus 160 n~~~~~~p~~~~~-----------------------------~~~~~~------~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 160 CPELTELPEPLAS-----------------------------TDASGE------HQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp ETTCCCCCSCSEE-----------------------------EC-CCC------EEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred CCCccccChhHhh-----------------------------ccchhh------hccCCCCCEEECcCCCcCcchHhhcC
Confidence 5555544443332 000000 01122444555555555556666666
Q ss_pred CCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcce
Q 003011 373 LTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIAN 452 (857)
Q Consensus 373 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~ 452 (857)
+++|++|++++|...+ +|..+..+++|+.|++++|...+.+|..++.
T Consensus 205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-------------------------------- 251 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-------------------------------- 251 (328)
T ss_dssp CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC--------------------------------
T ss_pred CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcC--------------------------------
Confidence 6666666666665442 4444555666666666665555555544443
Q ss_pred eeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCc-ceeccccccCCCCCcEEeccccc
Q 003011 453 WSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNN-FVSLPASIKQFTQMEELILSNCN 526 (857)
Q Consensus 453 L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~c~ 526 (857)
+++|+.|+|++|++.+ +|..++.+++|+.|+|++|+ +..+|..+..+++|+.+++..+.
T Consensus 252 ---------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 252 ---------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp ---------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred ---------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 4445555555544443 55556666677777777766 44677777777777777766543
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=3e-26 Score=262.55 Aligned_cols=346 Identities=16% Similarity=0.091 Sum_probs=193.5
Q ss_pred hhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCC-CCCC--CCC----CccEEEcCCCCCc-
Q 003011 179 AFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTL-PSNF--SPE----NLIELNLPYSKVE- 250 (857)
Q Consensus 179 ~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~--~l~----~L~~L~Ls~n~l~- 250 (857)
.|..+++|+.|++++|.+... ....++..+..+ ++|++|++++|.+... +..+ .+. +|++|+|++|.++
T Consensus 23 ~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 23 LLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 366777788888877763210 011344455555 4677777777776442 1111 233 6777777777776
Q ss_pred ----ccccCcCCCCCccEEEccCCCCCccCC-C-----CCCCCccceeeccCCccCCc----cCCcccCCCCCcEEeccC
Q 003011 251 ----QMWEGKKESFKLKWIDLHHCQYLIRFP-D-----PLETPNLERICLSDCIDLPC----IPSSIENFNNLSILCLQG 316 (857)
Q Consensus 251 ----~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~-----l~~l~~L~~L~L~~~~~~~~----~p~~i~~l~~L~~L~L~~ 316 (857)
.++..+..+++|++|+|++|.+....+ . ....++|++|++++|..... ++..+..+++|++|++++
T Consensus 100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 346667777777777777777432211 1 22345677777777765542 345556667777777777
Q ss_pred CCCCcccCCCC------CCCCCcEEEcCCCCCCCc----cccc---ccCcceEEecCccceec------CccccCCCcce
Q 003011 317 CESLRRFPSNI------HFRSPITLDFSDCLNLTE----FPQF---SGNIKQLYLCGTAIEEV------PSSVECLTELA 377 (857)
Q Consensus 317 c~~l~~lp~~~------~l~~L~~L~Ls~~~~l~~----~p~~---~~~L~~L~L~~~~l~~l------p~~l~~l~~L~ 377 (857)
|.....-+..+ ..++|++|++++|..... ++.. ..+|++|++++|.+... +.....+++|+
T Consensus 180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~ 259 (461)
T 1z7x_W 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259 (461)
T ss_dssp SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence 54221111111 244666777766643221 2221 23555555555555432 11122355555
Q ss_pred EEEccCcccccc----ccccccCCCCCCEeeccCCCCCCccccccC-----CCCCCCEEeccCCccccCCCCcccccCcC
Q 003011 378 ELYMRQCTRLKS----ISSRICKLKSLHLLSLDDCCRLERFPEITE-----TMECLEYFSLASTTIQEQPSSNEDRILPS 448 (857)
Q Consensus 378 ~L~L~~~~~l~~----lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~-----~l~~L~~L~L~~n~i~~lp~~~~~~~lp~ 448 (857)
+|++++|..... ++..+..+++|+.|++++|.+....+..+. ..++|+.|++++|.++...... +
T Consensus 260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~----l-- 333 (461)
T 1z7x_W 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH----F-- 333 (461)
T ss_dssp EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH----H--
T ss_pred EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH----H--
Confidence 555555544332 344444555555555555544332221111 1245555555555544221000 0
Q ss_pred CcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccC-CC----cCC-CCCCCCeeeCCCCcce-----eccccccCCCCC
Q 003011 449 SIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEI-PK----DIG-CLSSLRTLDLRGNNFV-----SLPASIKQFTQM 517 (857)
Q Consensus 449 ~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l-p~----~l~-~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L 517 (857)
...+..+++|++|+|++|.+.+. +. .+. ..++|+.|+|++|.++ .+|..+..+++|
T Consensus 334 -------------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 334 -------------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp -------------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred -------------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 00034568889999999988762 22 222 2678999999999887 678888888999
Q ss_pred cEEeccccccccc--------CCCCCCCcceeecccc
Q 003011 518 EELILSNCNLLQS--------LPELPPSLILLEARNC 546 (857)
Q Consensus 518 ~~L~L~~c~~l~~--------lp~l~~sL~~L~i~~C 546 (857)
++|++++|+.... +|....+|+.|.+.++
T Consensus 401 ~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 401 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred cEEECCCCCCCHHHHHHHHHHhccCCcchhheeeccc
Confidence 9999999876432 3433446666666554
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-23 Score=228.47 Aligned_cols=239 Identities=17% Similarity=0.136 Sum_probs=143.0
Q ss_pred CCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcC
Q 003011 260 FKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFS 338 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls 338 (857)
++|++|+|++|.+....| .+..+++|++|+|++|...+..+ ++.+++|++|++++| .++.++. .++|++|+++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~~---~~~L~~L~l~ 107 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV---GPSIETLHAA 107 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEEE---CTTCCEEECC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-ccccccC---CCCcCEEECC
Confidence 344444444444322222 24444444444444443332222 444455555555443 2222221 2455555555
Q ss_pred CCCCCCcccccccCcceEEecCccceecCc-cccCCCcceEEEccCccccccccccc-cCCCCCCEeeccCCCCCCcccc
Q 003011 339 DCLNLTEFPQFSGNIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRI-CKLKSLHLLSLDDCCRLERFPE 416 (857)
Q Consensus 339 ~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~Ls~~~~~~~~~~ 416 (857)
+|......+..+.+|+.|++++|.++.++. .+..+++|++|++++|......+..+ ..+++|+.|++++|.+... +
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~- 185 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K- 185 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-
Confidence 544333333334566666777777776644 56677778888888777666555555 3677777777777766544 2
Q ss_pred ccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCe
Q 003011 417 ITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRT 496 (857)
Q Consensus 417 ~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 496 (857)
....+++|+.|++++|.++.+|..+ ..+++|+.|++++|.++.+|..+..+++|+.
T Consensus 186 ~~~~l~~L~~L~Ls~N~l~~l~~~~------------------------~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 186 GQVVFAKLKTLDLSSNKLAFMGPEF------------------------QSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241 (317)
T ss_dssp CCCCCTTCCEEECCSSCCCEECGGG------------------------GGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred cccccccCCEEECCCCcCCcchhhh------------------------cccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence 2234777777777777777666543 2467788888888888887777777888888
Q ss_pred eeCCCCcce--eccccccCCCCCcEEeccccccccc
Q 003011 497 LDLRGNNFV--SLPASIKQFTQMEELILSNCNLLQS 530 (857)
Q Consensus 497 L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~~ 530 (857)
|++++|.+. .+|..+..+++|+.|++++|+.++.
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 888888876 6677777788888888876665543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.8e-22 Score=218.02 Aligned_cols=241 Identities=19% Similarity=0.254 Sum_probs=155.4
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccC-cCCCCCccEEEccCCCCCcc--CC-CCCCCCccceeeccCC
Q 003011 218 RYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEG-KKESFKLKWIDLHHCQYLIR--FP-DPLETPNLERICLSDC 293 (857)
Q Consensus 218 r~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~--lp-~l~~l~~L~~L~L~~~ 293 (857)
+.++++++.++.+|..+ .++|++|+|++|.++.+|.. +..+++|++|+|++|.+... .| .+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 35666677777777654 25677777777777777654 46777777777777764322 12 3445677777777776
Q ss_pred ccCCccCCcccCCCCCcEEeccCCCCCcccCC--CC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceec-Ccc
Q 003011 294 IDLPCIPSSIENFNNLSILCLQGCESLRRFPS--NI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEV-PSS 369 (857)
Q Consensus 294 ~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~l-p~~ 369 (857)
... .+|..+..+++|++|++++| .++.++. .+ .+++|++|++++| .+..+ |..
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n---------------------~l~~~~~~~ 145 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT---------------------HTRVAFNGI 145 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS---------------------CCEECSTTT
T ss_pred ccc-cChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC---------------------cCCccchhh
Confidence 543 45666777777777777764 3333332 11 4444444444443 34332 334
Q ss_pred ccCCCcceEEEccCccccc-cccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcC
Q 003011 370 VECLTELAELYMRQCTRLK-SISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPS 448 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~ 448 (857)
+..+++|++|++++|...+ .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++...
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------- 218 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP------- 218 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG-------
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh-------
Confidence 6667777777777776665 46666777777777777777777666777777777777777777777655432
Q ss_pred CcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCC-CCCeeeCCCCcce
Q 003011 449 SIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLS-SLRTLDLRGNNFV 505 (857)
Q Consensus 449 ~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~Ls~n~l~ 505 (857)
+..+++|+.|++++|.+.+ .|..+..++ +|+.|+|++|+++
T Consensus 219 ----------------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 219 ----------------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp ----------------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred ----------------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 2356777777777777777 455666664 7778888777766
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=2.7e-21 Score=220.74 Aligned_cols=222 Identities=18% Similarity=0.127 Sum_probs=143.3
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCccc-ccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQM-WEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
.+.++.++..++.+|..+ ..+|++|+|++|+++.+ +..+..+++|++|+|++|.+....| .+.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 344455555555555443 24555555555555544 2344555555555555555433333 35555555555555554
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCCcccc----cccCcceEEecCccceecCc
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLTEFPQ----FSGNIKQLYLCGTAIEEVPS 368 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~~~p~----~~~~L~~L~L~~~~l~~lp~ 368 (857)
.....+..++.+++|++|+|++| .++.+|... .+++|+.|++++|..++.++. ...+|+.|++++|.+..+|
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-
T ss_pred CCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-
Confidence 44333344555555555555553 233444322 455555555555555554443 1236667777777777776
Q ss_pred cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCc
Q 003011 369 SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSN 441 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~ 441 (857)
.+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.+|...
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 285 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH
Confidence 4778899999999999988888889999999999999999998888889999999999999999999887754
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.3e-21 Score=211.32 Aligned_cols=240 Identities=19% Similarity=0.240 Sum_probs=153.5
Q ss_pred cEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-C-CCCCCccceeeccCCccCC--ccCCcccCCCCCcEEecc
Q 003011 240 IELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-D-PLETPNLERICLSDCIDLP--CIPSSIENFNNLSILCLQ 315 (857)
Q Consensus 240 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~-l~~l~~L~~L~L~~~~~~~--~~p~~i~~l~~L~~L~L~ 315 (857)
+.++.+++.++.+|..+. ++|++|+|++|.+. .+| . +.++++|++|+|++|.... ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 578899999999987664 68999999998854 555 2 6888899999998876542 235566667777777777
Q ss_pred CCCCCcccCCCC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCc--cccCCCcceEEEccCccccccccc
Q 003011 316 GCESLRRFPSNI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPS--SVECLTELAELYMRQCTRLKSISS 392 (857)
Q Consensus 316 ~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~ 392 (857)
+| .+..+|..+ .+++ |++|++++|.+..++. .+..+++|++|++++|......+.
T Consensus 87 ~n-~i~~l~~~~~~l~~---------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 87 FN-GVITMSSNFLGLEQ---------------------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp SC-SEEEEEEEEETCTT---------------------CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred CC-ccccChhhcCCCCC---------------------CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 64 233343322 3333 3444444445555543 466677777777777766666666
Q ss_pred cccCCCCCCEeeccCCCCCC-ccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCC
Q 003011 393 RICKLKSLHLLSLDDCCRLE-RFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSL 471 (857)
Q Consensus 393 ~l~~l~~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L 471 (857)
.+..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.++.++... +..+++|
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------------------~~~l~~L 201 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-----------------------FNSLSSL 201 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-----------------------TTTCTTC
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH-----------------------hcCCCCC
Confidence 66667777777777776655 45666666666777777666666553321 2345666
Q ss_pred cEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCccee-ccccccCCC-CCcEEecccccc
Q 003011 472 TGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVS-LPASIKQFT-QMEELILSNCNL 527 (857)
Q Consensus 472 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~L~~c~~ 527 (857)
+.|+|++|.+++++. .+..+++|+.|+|++|.++. .|..+..++ +|+.|+|++|+.
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 666666666666443 55666666666666666653 344555553 666666666654
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=3.4e-21 Score=219.10 Aligned_cols=222 Identities=18% Similarity=0.120 Sum_probs=141.5
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
.+.++.++..++.+|..+. .+++.|+|++|+++.++ ..+.++++|++|+|++|.+....+ .+.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3445555555555554432 45555555555555443 344555555555555555332222 35555555555555554
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCC-C-CCCCCcEEEcCCCCCCCcccc----cccCcceEEecCccceecCc
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSN-I-HFRSPITLDFSDCLNLTEFPQ----FSGNIKQLYLCGTAIEEVPS 368 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~~~~l~~~p~----~~~~L~~L~L~~~~l~~lp~ 368 (857)
.....+..+..+++|++|+|++| .++.+|.. + .+++|+.|++++|..+..++. ...+|+.|++++|.++.+|.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred CCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 44333334555555555555553 23333332 2 455555555555555544443 12366677777777777764
Q ss_pred cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCc
Q 003011 369 SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSN 441 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~ 441 (857)
+..+++|+.|++++|.+....|..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.++.+|...
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 274 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL 274 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH
Confidence 788899999999999888877888999999999999999998888889999999999999999999887754
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=7.3e-22 Score=210.97 Aligned_cols=221 Identities=19% Similarity=0.186 Sum_probs=124.5
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCcc
Q 003011 218 RYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCID 295 (857)
Q Consensus 218 r~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~ 295 (857)
+.++.+++.++.+|..+ +++|++|++++|.++.++ ..+..+++|++|+|++|.+....| .+.++++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56777777777777654 467778888888777766 346777777777777776544434 566677777777777653
Q ss_pred CCcc-CCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCC
Q 003011 296 LPCI-PSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLT 374 (857)
Q Consensus 296 ~~~~-p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~ 374 (857)
...+ |..+..+++|++|++++|......|. .+..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------------------------------~~~~l~ 129 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPG-------------------------------------------LFRGLA 129 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTT-------------------------------------------TTTTCT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHh-------------------------------------------HhhCCc
Confidence 3333 55666666666666666432221122 223333
Q ss_pred cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceee
Q 003011 375 ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWS 454 (857)
Q Consensus 375 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~ 454 (857)
+|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.++.++...
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------------- 196 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA------------- 196 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-------------
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH-------------
Confidence 3333333333333222233444444444444444444333334455555555555555554432211
Q ss_pred ccccCCcCCCCCCCCCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcce
Q 003011 455 YGCRGLILPPLPGLSSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 455 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~ 505 (857)
+.++++|+.|++++|.+++++ ..+..+++|+.|++++|++.
T Consensus 197 ----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 197 ----------FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ----------TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ----------ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 234566666666666666655 33666777777777777765
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=5e-23 Score=223.58 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=206.7
Q ss_pred ccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCC
Q 003011 262 LKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDC 340 (857)
Q Consensus 262 L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~ 340 (857)
++.++++.+.+...++ .+..+++|++|+|++|......|..++.+++|++|++++|.. ...+....+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC-EEEEEETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC-CcchhhhhcCCCCEEECcCC
Confidence 4445555554322222 244578999999999988887778999999999999999654 44444348999999999998
Q ss_pred CCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCcccccc-C
Q 003011 341 LNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEIT-E 419 (857)
Q Consensus 341 ~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l-~ 419 (857)
. +..++.. .+|+.|++++|.+..++.. .+++|++|++++|......+..+..+++|+.|++++|.+....+..+ .
T Consensus 91 ~-l~~l~~~-~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 166 (317)
T 3o53_A 91 Y-VQELLVG-PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166 (317)
T ss_dssp E-EEEEEEC-TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred c-cccccCC-CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence 5 4555533 6899999999999988654 47899999999998888778788999999999999998888777666 4
Q ss_pred CCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeC
Q 003011 420 TMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDL 499 (857)
Q Consensus 420 ~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 499 (857)
.+++|+.|++++|.++.++.. ..+++|++|+|++|.++++|..+..+++|+.|+|
T Consensus 167 ~l~~L~~L~L~~N~l~~~~~~-------------------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 167 SSDTLEHLNLQYNFIYDVKGQ-------------------------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp GTTTCCEEECTTSCCCEEECC-------------------------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred ccCcCCEEECCCCcCcccccc-------------------------cccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 789999999999999877542 2478999999999999999988999999999999
Q ss_pred CCCcceeccccccCCCCCcEEeccccccc-ccCCCC---CCCcceeecccccCCC
Q 003011 500 RGNNFVSLPASIKQFTQMEELILSNCNLL-QSLPEL---PPSLILLEARNCKQLQ 550 (857)
Q Consensus 500 s~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~lp~l---~~sL~~L~i~~C~~L~ 550 (857)
++|.++.+|..+..+++|+.|++++|+.. ..+|.. .++|+.|++.+|..++
T Consensus 222 ~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 222 RNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp TTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99999999999999999999999999987 444432 2345555555554443
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=1.1e-20 Score=201.88 Aligned_cols=224 Identities=20% Similarity=0.188 Sum_probs=178.0
Q ss_pred ccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCC
Q 003011 239 LIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGC 317 (857)
Q Consensus 239 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c 317 (857)
-++++.+++.++.+|.++ .++|++|+|++|.+....+ .+..+++|++|++++|......|..++.+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 367888888888888655 4688888888887554443 4777778888888777665555666666777777666664
Q ss_pred CCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCC
Q 003011 318 ESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKL 397 (857)
Q Consensus 318 ~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l 397 (857)
..++.++ |..+..+++|++|++++|......|..+..+
T Consensus 91 ~~l~~~~------------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 128 (285)
T 1ozn_A 91 AQLRSVD------------------------------------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128 (285)
T ss_dssp TTCCCCC------------------------------------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred CCccccC------------------------------------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCC
Confidence 3233221 3346667888888888888777778889999
Q ss_pred CCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEee
Q 003011 398 KSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLS 477 (857)
Q Consensus 398 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls 477 (857)
++|+.|++++|.+....+..+..+++|+.|++++|.++.+|... +.++++|+.|+++
T Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----------------------~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-----------------------FRGLHSLDRLLLH 185 (285)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT-----------------------TTTCTTCCEEECC
T ss_pred cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH-----------------------hcCccccCEEECC
Confidence 99999999999988777778999999999999999998877643 4478999999999
Q ss_pred CCCCcc-CCCcCCCCCCCCeeeCCCCcceeccc-cccCCCCCcEEecccccccc
Q 003011 478 FRNITE-IPKDIGCLSSLRTLDLRGNNFVSLPA-SIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 478 ~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~c~~l~ 529 (857)
+|.+.+ .|..+..+++|+.|++++|.++.+|. .+..+++|+.|+|++|+...
T Consensus 186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999 48889999999999999999998874 48899999999999998654
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.5e-20 Score=214.71 Aligned_cols=221 Identities=15% Similarity=0.149 Sum_probs=171.6
Q ss_pred cCCeeEEEEeCCCCCCC-CCCC-CCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceee
Q 003011 214 SDELRYLHWHGYPLKTL-PSNF-SPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERIC 289 (857)
Q Consensus 214 ~~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~ 289 (857)
|.+|++|++++|.++.+ |..| ++++|++|+|++|.++.++ ..+..+++|++|+|++|.+....+ .+..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35777778877777776 4445 7778888888888777665 556777788888888777443333 367777888888
Q ss_pred ccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCCcccccc--cCcceEEecCcccee
Q 003011 290 LSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLTEFPQFS--GNIKQLYLCGTAIEE 365 (857)
Q Consensus 290 L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~~~p~~~--~~L~~L~L~~~~l~~ 365 (857)
|++|......+..+..+++|+.|++++|+.++.++... .+++|+.|++++|. +..+|... .+|+.|++++|.+..
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcCcc
Confidence 88776655445567778888888888777777777643 67788888888774 44455432 378888899999988
Q ss_pred c-CccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccc
Q 003011 366 V-PSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 366 l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
+ |..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 7 556899999999999999998888888999999999999999988777788899999999999999875
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=215.04 Aligned_cols=265 Identities=17% Similarity=0.092 Sum_probs=207.6
Q ss_pred CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEe
Q 003011 235 SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILC 313 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~ 313 (857)
.+......+++++.++.+|..+. ++|++|++++|.+....+ .+.++++|++|++++|......|..++.+++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 44555668999999999998765 589999999998654444 588999999999999877776677888999999999
Q ss_pred ccCCCCCcccCCC-C-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCc--cccCCCcceEEEccCcccccc
Q 003011 314 LQGCESLRRFPSN-I-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPS--SVECLTELAELYMRQCTRLKS 389 (857)
Q Consensus 314 L~~c~~l~~lp~~-~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~ 389 (857)
+++| .++.+|.. + .+++|++|+ +++|.+..+|. .+..+++|++|++++|...+.
T Consensus 107 Ls~n-~l~~~~~~~~~~l~~L~~L~---------------------L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 107 LSYN-YLSNLSSSWFKPLSSLTFLN---------------------LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp CCSS-CCSSCCHHHHTTCTTCSEEE---------------------CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCCC-cCCcCCHhHhCCCccCCEEE---------------------CCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 9885 44445443 1 445555554 55556666666 578899999999999965555
Q ss_pred c-cccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCC
Q 003011 390 I-SSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGL 468 (857)
Q Consensus 390 l-p~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l 468 (857)
+ +..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.+|.... ..+
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-----------------------~~~ 221 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV-----------------------DVT 221 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHH-----------------------HHT
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhh-----------------------hhc
Confidence 4 5678999999999999999998889999999999999999999877665432 247
Q ss_pred CCCcEEEeeCCCCccCCC-c---CCCCCCCCeeeCCCCcce-----eccccccCCCCCcEEecccccccccCCC----CC
Q 003011 469 SSLTGLNLSFRNITEIPK-D---IGCLSSLRTLDLRGNNFV-----SLPASIKQFTQMEELILSNCNLLQSLPE----LP 535 (857)
Q Consensus 469 ~~L~~L~Ls~n~l~~lp~-~---l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~c~~l~~lp~----l~ 535 (857)
++|+.|++++|.+++++. . ....+.++.++++++.+. .+|..+..+++|+.|+|++|+.. .+|. -.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l 300 (353)
T 2z80_A 222 SSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRL 300 (353)
T ss_dssp TTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred ccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcC
Confidence 899999999999998542 2 234677888888888765 58888999999999999999866 5663 23
Q ss_pred CCcceeeccccc
Q 003011 536 PSLILLEARNCK 547 (857)
Q Consensus 536 ~sL~~L~i~~C~ 547 (857)
++|+.|++++|+
T Consensus 301 ~~L~~L~L~~N~ 312 (353)
T 2z80_A 301 TSLQKIWLHTNP 312 (353)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEEeeCCC
Confidence 678888888885
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=2.2e-20 Score=212.36 Aligned_cols=221 Identities=18% Similarity=0.188 Sum_probs=175.1
Q ss_pred cCCeeEEEEeCCCCCCCC-CCC-CCCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC-CCCCCCccceee
Q 003011 214 SDELRYLHWHGYPLKTLP-SNF-SPENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERIC 289 (857)
Q Consensus 214 ~~~Lr~L~l~~~~l~~lp-~~~-~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~ 289 (857)
+.++++|++++|.++.++ ..| ++++|++|+|++|.++.++ ..+..+++|++|+|++|++....+ .+..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 357788888888887775 445 7788888888888887765 456778888888888887443333 477788888888
Q ss_pred ccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCCcccccc--cCcceEEecCcccee
Q 003011 290 LSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLTEFPQFS--GNIKQLYLCGTAIEE 365 (857)
Q Consensus 290 L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~~~p~~~--~~L~~L~L~~~~l~~ 365 (857)
|++|......+..+..+++|+.|++++|+.+..++... .+++|+.|++++| .+..+|... .+|+.|+|++|.++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCc
Confidence 88877665555577788888888888877777777643 6788888888887 345566433 378889999999998
Q ss_pred c-CccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccc
Q 003011 366 V-PSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 366 l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
+ |..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+....+..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 7 567899999999999999988888888999999999999999998888888999999999999999875
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.1e-21 Score=225.66 Aligned_cols=233 Identities=15% Similarity=0.103 Sum_probs=156.1
Q ss_pred CCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEecc
Q 003011 237 ENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQ 315 (857)
Q Consensus 237 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~ 315 (857)
++|++|+|++|.++.++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|...+ +| ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEECc
Confidence 36777777777777654 456677777777777776443333 6666666666666654322 11 12445555554
Q ss_pred CCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceec-CccccCCCcceEEEccCccccccccccc
Q 003011 316 GCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEV-PSSVECLTELAELYMRQCTRLKSISSRI 394 (857)
Q Consensus 316 ~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l 394 (857)
+ |......+..+.+|+.|++++|.++.+ |..++.+++|+.|++++|.+.+..|..+
T Consensus 108 ~-----------------------N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 164 (487)
T 3oja_A 108 N-----------------------NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (487)
T ss_dssp S-----------------------SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred C-----------------------CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH
Confidence 4 333222233334566666666667665 4456778888888888887777777666
Q ss_pred c-CCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcE
Q 003011 395 C-KLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTG 473 (857)
Q Consensus 395 ~-~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~ 473 (857)
. .+++|+.|+|++|.+.+. + ....+++|+.|++++|.++.+|..+ ..+++|+.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------~~l~~L~~ 218 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEF------------------------QSAAGVTW 218 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGG------------------------GGGTTCSE
T ss_pred hhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCHhH------------------------cCCCCccE
Confidence 5 678888888888876654 2 2335778888888888887766543 24678888
Q ss_pred EEeeCCCCccCCCcCCCCCCCCeeeCCCCcce--eccccccCCCCCcEEeccc
Q 003011 474 LNLSFRNITEIPKDIGCLSSLRTLDLRGNNFV--SLPASIKQFTQMEELILSN 524 (857)
Q Consensus 474 L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~ 524 (857)
|+|++|.++++|..+..+++|+.|++++|.+. .+|..+..++.|+.|+++.
T Consensus 219 L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~ 271 (487)
T 3oja_A 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (487)
T ss_dssp EECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccc
Confidence 88888888888888888888888888888877 6777777888888887763
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.85 E-value=1.4e-22 Score=219.47 Aligned_cols=241 Identities=19% Similarity=0.212 Sum_probs=157.6
Q ss_pred CCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcc--cccCcC-------CCCCccEEEccCCCCCccCC-CC--CC
Q 003011 215 DELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQ--MWEGKK-------ESFKLKWIDLHHCQYLIRFP-DP--LE 281 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~lp-~l--~~ 281 (857)
++|++|++++|.+ .+|..+ .. |+.|+|++|.++. +|..+. .+++|++|+|++|.+...+| .+ ..
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 3566666777777 666544 22 7777777777653 343333 56677777777776655555 23 56
Q ss_pred CCccceeeccCCccCCccCCcccCC-----CCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceE
Q 003011 282 TPNLERICLSDCIDLPCIPSSIENF-----NNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQL 356 (857)
Q Consensus 282 l~~L~~L~L~~~~~~~~~p~~i~~l-----~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L 356 (857)
+++|++|+|++|...+. |..++.+ ++|++|++++
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~---------------------------------------- 158 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQ---------------------------------------- 158 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEES----------------------------------------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeC----------------------------------------
Confidence 66666666666655444 5545444 4444444444
Q ss_pred EecCccceecC-ccccCCCcceEEEccCcccccc--ccccc--cCCCCCCEeeccCCCCCC--ccc-cccCCCCCCCEEe
Q 003011 357 YLCGTAIEEVP-SSVECLTELAELYMRQCTRLKS--ISSRI--CKLKSLHLLSLDDCCRLE--RFP-EITETMECLEYFS 428 (857)
Q Consensus 357 ~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~--lp~~l--~~l~~L~~L~Ls~~~~~~--~~~-~~l~~l~~L~~L~ 428 (857)
|.+..++ ..++.+++|++|++++|...+. +|..+ ..+++|+.|++++|.+.. .++ ..+..+++|+.|+
T Consensus 159 ----N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 159 ----AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234 (312)
T ss_dssp ----CSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE
T ss_pred ----CCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE
Confidence 3344433 3455666666666666665443 23333 677777777777776652 222 3445778888888
Q ss_pred ccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceecc
Q 003011 429 LASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 429 L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 508 (857)
+++|.++..+... .+..+++|++|+|++|.++.+|..+. ++|+.|+|++|.++.+|
T Consensus 235 Ls~N~l~~~~~~~----------------------~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 235 LSHNSLRDAAGAP----------------------SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CTTSCCCSSCCCS----------------------CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC
T ss_pred CCCCcCCcccchh----------------------hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh
Confidence 8888887654211 13357889999999999988888776 88999999999999887
Q ss_pred ccccCCCCCcEEeccccccc
Q 003011 509 ASIKQFTQMEELILSNCNLL 528 (857)
Q Consensus 509 ~~l~~l~~L~~L~L~~c~~l 528 (857)
. +..+++|++|+|++|+..
T Consensus 291 ~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 291 S-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C-TTTSCEEEEEECTTCTTT
T ss_pred h-HhhCCCCCEEeccCCCCC
Confidence 6 888999999999998764
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.7e-23 Score=239.61 Aligned_cols=340 Identities=18% Similarity=0.128 Sum_probs=240.6
Q ss_pred CCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCC-----CCCCCC-CCCCccEEEcCCCCCccc-ccCc
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLK-----TLPSNF-SPENLIELNLPYSKVEQM-WEGK 256 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-----~lp~~~-~l~~L~~L~Ls~n~l~~l-~~~~ 256 (857)
++|+.|++++|.++. ......+..+ ++|++|++++|.+. .+|..+ .+++|++|+|++|.+... +..+
T Consensus 3 ~~l~~L~Ls~~~l~~-----~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l 76 (461)
T 1z7x_W 3 LDIQSLDIQCEELSD-----ARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCV 76 (461)
T ss_dssp EEEEEEEEESCCCCH-----HHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccceehhhhhcccCc-----hhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHH
Confidence 578999999887321 1122224555 58999999999987 456656 789999999999998742 2111
Q ss_pred -CCCC----CccEEEccCCCCCc----cCC-CCCCCCccceeeccCCccCCccCCccc-----CCCCCcEEeccCCCCCc
Q 003011 257 -KESF----KLKWIDLHHCQYLI----RFP-DPLETPNLERICLSDCIDLPCIPSSIE-----NFNNLSILCLQGCESLR 321 (857)
Q Consensus 257 -~~l~----~L~~L~Ls~~~~l~----~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~-----~l~~L~~L~L~~c~~l~ 321 (857)
..++ +|++|+|++|.+.. .++ .+..+++|++|++++|......+..+. ..++|++|++++|....
T Consensus 77 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 77 LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2333 79999999998653 345 588899999999999876544333332 35689999999875433
Q ss_pred c----cCCCC-CCCCCcEEEcCCCCCCCccc----c----cccCcceEEecCcccee-----cCccccCCCcceEEEccC
Q 003011 322 R----FPSNI-HFRSPITLDFSDCLNLTEFP----Q----FSGNIKQLYLCGTAIEE-----VPSSVECLTELAELYMRQ 383 (857)
Q Consensus 322 ~----lp~~~-~l~~L~~L~Ls~~~~l~~~p----~----~~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~ 383 (857)
. ++..+ .+++|++|++++|......+ . ...+|++|++++|.++. ++..+..+++|++|++++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 2 23323 57899999999987432211 1 12389999999998886 567778889999999999
Q ss_pred ccccccc-----cccccCCCCCCEeeccCCCCCCc----cccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceee
Q 003011 384 CTRLKSI-----SSRICKLKSLHLLSLDDCCRLER----FPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWS 454 (857)
Q Consensus 384 ~~~l~~l-----p~~l~~l~~L~~L~Ls~~~~~~~----~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~ 454 (857)
|...... +..+..+++|+.|++++|.+... ++..+..+++|+.|++++|.++..........+
T Consensus 237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-------- 308 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-------- 308 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------
T ss_pred CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------
Confidence 8765432 22234688999999999977654 677778889999999999987632211100000
Q ss_pred ccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeCCCCcceec-cc----cccC-CCCCcEEecc
Q 003011 455 YGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPKDIGCLSSLRTLDLRGNNFVSL-PA----SIKQ-FTQMEELILS 523 (857)
Q Consensus 455 l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-p~----~l~~-l~~L~~L~L~ 523 (857)
....++|++|++++|.++. ++..+..+++|+.|+|++|.+... +. .+.. .++|++|+|+
T Consensus 309 ----------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 309 ----------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp ----------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred ----------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 1234689999999999986 466777889999999999998743 22 2332 7899999999
Q ss_pred cccccc----cCCCC---CCCcceeeccccc
Q 003011 524 NCNLLQ----SLPEL---PPSLILLEARNCK 547 (857)
Q Consensus 524 ~c~~l~----~lp~l---~~sL~~L~i~~C~ 547 (857)
+|.... .+|.. .++|+.|++++|+
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 998764 55532 4789999998884
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.5e-21 Score=221.39 Aligned_cols=220 Identities=16% Similarity=0.117 Sum_probs=173.8
Q ss_pred CCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEc
Q 003011 259 SFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDF 337 (857)
Q Consensus 259 l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 337 (857)
+++|++|+|++|.+....| .+..+++|++|+|++|...+..| ++.+++|++|+|++| .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~------------------ 91 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-Y------------------ 91 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-E------------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-c------------------
Confidence 3467777777766544333 46666666666666655444333 555555555555553 2
Q ss_pred CCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccc
Q 003011 338 SDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEI 417 (857)
Q Consensus 338 s~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~ 417 (857)
+..+|.. .+|+.|++++|.+..++.. .+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+..|..
T Consensus 92 -----l~~l~~~-~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 92 -----VQELLVG-PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp -----EEEEEEC-TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred -----CCCCCCC-CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 2222222 5899999999999988764 5789999999999998888888999999999999999999888877
Q ss_pred cC-CCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCe
Q 003011 418 TE-TMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRT 496 (857)
Q Consensus 418 l~-~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 496 (857)
+. .+++|+.|++++|.++.+|.. ..+++|+.|+|++|.++++|..+..+++|+.
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~-------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQ-------------------------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECC-------------------------CCCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred HhhhCCcccEEecCCCcccccccc-------------------------ccCCCCCEEECCCCCCCCCCHhHcCCCCccE
Confidence 76 799999999999999877552 3578999999999999999988999999999
Q ss_pred eeCCCCcceeccccccCCCCCcEEeccccccc-ccCC
Q 003011 497 LDLRGNNFVSLPASIKQFTQMEELILSNCNLL-QSLP 532 (857)
Q Consensus 497 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l-~~lp 532 (857)
|+|++|.++.+|..+..+++|+.|++++|+.. ..+|
T Consensus 219 L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred EEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence 99999999999999999999999999999977 3444
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.7e-21 Score=210.92 Aligned_cols=172 Identities=19% Similarity=0.203 Sum_probs=132.3
Q ss_pred cceEEecCccceecCccccCC-----CcceEEEccCccccccccccccCCCCCCEeeccCCCCCCc--ccccc--CCCCC
Q 003011 353 IKQLYLCGTAIEEVPSSVECL-----TELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLER--FPEIT--ETMEC 423 (857)
Q Consensus 353 L~~L~L~~~~l~~lp~~l~~l-----~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~--~~~~l--~~l~~ 423 (857)
|++|++++|.++.+|..++.+ ++|++|++++|...+..|..+..+++|+.|++++|...+. ++..+ ..+++
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 333344444455555555544 8999999999998888878999999999999999997765 34444 88999
Q ss_pred CCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC--CcCCCCCCCCeeeCCC
Q 003011 424 LEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP--KDIGCLSSLRTLDLRG 501 (857)
Q Consensus 424 L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~ 501 (857)
|++|++++|.++.++..... + +.++++|++|++++|.+.+.+ ..+..+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~~~~~~~~~--~------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 203 LQVLALRNAGMETPSGVCSA--L------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp CCEEECTTSCCCCHHHHHHH--H------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred CCEEECCCCcCcchHHHHHH--H------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 99999999998854321110 0 235789999999999999944 5667789999999999
Q ss_pred CcceeccccccCCCCCcEEecccccccccCCC--CCCCcceeeccccc
Q 003011 502 NNFVSLPASIKQFTQMEELILSNCNLLQSLPE--LPPSLILLEARNCK 547 (857)
Q Consensus 502 n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~--l~~sL~~L~i~~C~ 547 (857)
|.++.+|..+. ++|++|+|++|+... +|. -.++|+.|++++++
T Consensus 263 N~l~~ip~~~~--~~L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 263 TGLKQVPKGLP--AKLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCCSSCC--SEEEEEECCSSCCCS-CCCTTTSCEEEEEECTTCT
T ss_pred CccChhhhhcc--CCceEEECCCCCCCC-ChhHhhCCCCCEEeccCCC
Confidence 99999998876 899999999998654 364 23677777777764
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=4.8e-19 Score=188.09 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=59.2
Q ss_pred EEEeCCCCCCCCCCCCCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCC
Q 003011 220 LHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLP 297 (857)
Q Consensus 220 L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~ 297 (857)
.+..+..+..+|..+ ..+|++|++++|.++.++. .+..+++|++|+|++|.+....+ .+.++++|++|++++|....
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 344455566666654 2467777777777776654 56677777777777776443333 46666666666666665554
Q ss_pred ccCCcccCCCCCcEEeccCC
Q 003011 298 CIPSSIENFNNLSILCLQGC 317 (857)
Q Consensus 298 ~~p~~i~~l~~L~~L~L~~c 317 (857)
..+..+..+++|++|++++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTS
T ss_pred cChhhhcCCccccEEECCCC
Confidence 44455555566666655553
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=7.4e-22 Score=233.48 Aligned_cols=358 Identities=15% Similarity=0.116 Sum_probs=243.8
Q ss_pred hcCCCCccEEEEecCCccccccceeecCCcccc-ccCCeeEEEEeCCCC-C--CCCCCC-CCCCccEEEcCCCCCccc--
Q 003011 180 FACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDY-LSDELRYLHWHGYPL-K--TLPSNF-SPENLIELNLPYSKVEQM-- 252 (857)
Q Consensus 180 f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~-l~~~Lr~L~l~~~~l-~--~lp~~~-~l~~L~~L~Ls~n~l~~l-- 252 (857)
+..+++|+.|++++|.+ ....+..+.. ++.+|++|++++|.. . .++... .+++|++|+|++|.+...
T Consensus 108 ~~~~~~L~~L~L~~~~i------~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIV------SDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HHHCTTCCEEEEESCBC------CHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred HhhCCCCCeEEeeccEe------cHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 44789999999998762 2222333333 334599999988862 1 122222 678999999999986532
Q ss_pred ---ccCcCCCCCccEEEccCCCCC----ccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCc---
Q 003011 253 ---WEGKKESFKLKWIDLHHCQYL----IRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLR--- 321 (857)
Q Consensus 253 ---~~~~~~l~~L~~L~Ls~~~~l----~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~--- 321 (857)
+.....+++|++|+|++|... ..++ .+.++++|++|++++|...+ +|..++.+++|+.|+++.+....
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchH
Confidence 233467889999999998864 2233 24567999999999976554 77888899999999997543331
Q ss_pred ccCCCC-CCCCCcEEEcCCCCCCCccccc---ccCcceEEecCcccee--cCccccCCCcceEEEccCcccccccccccc
Q 003011 322 RFPSNI-HFRSPITLDFSDCLNLTEFPQF---SGNIKQLYLCGTAIEE--VPSSVECLTELAELYMRQCTRLKSISSRIC 395 (857)
Q Consensus 322 ~lp~~~-~l~~L~~L~Ls~~~~l~~~p~~---~~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~ 395 (857)
..+..+ .+++|+.|+++++ ....+|.. ..+|++|++++|.+.. ++..+..+++|+.|++.++.....++..+.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHH
Confidence 222223 6788999999875 33444443 3488999999988653 333467889999999985544444555556
Q ss_pred CCCCCCEeeccC----------CCCCC--ccccccCCCCCCCEEeccCCccccCC-CCcccccCcCCcceeecc----cc
Q 003011 396 KLKSLHLLSLDD----------CCRLE--RFPEITETMECLEYFSLASTTIQEQP-SSNEDRILPSSIANWSYG----CR 458 (857)
Q Consensus 396 ~l~~L~~L~Ls~----------~~~~~--~~~~~l~~l~~L~~L~L~~n~i~~lp-~~~~~~~lp~~L~~L~l~----~~ 458 (857)
.+++|+.|++++ |.... .++.....+++|++|+++.+.++... ..+.. ..++|+.|++. ++
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~--~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT--YLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH--HCCSCCEEEEEECSCCS
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh--hCCCCcEEEEeecCCCc
Confidence 788999999994 54443 23344566899999999877776321 11111 12678888883 55
Q ss_pred CCcCCC--------CCCCCCCcEEEeeCCC--Ccc-CCCc-CCCCCCCCeeeCCCCcce--eccccccCCCCCcEEeccc
Q 003011 459 GLILPP--------LPGLSSLTGLNLSFRN--ITE-IPKD-IGCLSSLRTLDLRGNNFV--SLPASIKQFTQMEELILSN 524 (857)
Q Consensus 459 ~~~~~~--------l~~l~~L~~L~Ls~n~--l~~-lp~~-l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~ 524 (857)
.+...+ +.++++|+.|++++|. +++ .+.. ...+++|+.|+|++|.++ .++..+..+++|++|+|++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 544321 4568999999998764 554 2222 245889999999999987 4666778899999999999
Q ss_pred cccccc-CCC---CCCCcceeeccccc
Q 003011 525 CNLLQS-LPE---LPPSLILLEARNCK 547 (857)
Q Consensus 525 c~~l~~-lp~---l~~sL~~L~i~~C~ 547 (857)
|+.... ++. ..++|+.|++++|.
T Consensus 498 n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 498 CCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 995322 232 34789999999997
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=8.6e-19 Score=186.12 Aligned_cols=224 Identities=20% Similarity=0.203 Sum_probs=133.9
Q ss_pred cEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCC
Q 003011 240 IELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCE 318 (857)
Q Consensus 240 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~ 318 (857)
...+..+..+..+|..+. ++|++|+|++|.+....+ .+.++++|++|++++|......+..++.+++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 345666777778887664 578888888887554444 57777888888888776555545566677777777776643
Q ss_pred CCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCC
Q 003011 319 SLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLK 398 (857)
Q Consensus 319 ~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 398 (857)
++.++. ..+..+++|++|++++|......+..+..++
T Consensus 88 -l~~~~~------------------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 88 -IQSLAL------------------------------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp -CCEECT------------------------------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred -cCccCh------------------------------------------hhhcCCccccEEECCCCCccccCchhcccCC
Confidence 222221 2233444444444444444333333455555
Q ss_pred CCCEeeccCCCCCC-ccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCc-EEEe
Q 003011 399 SLHLLSLDDCCRLE-RFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLT-GLNL 476 (857)
Q Consensus 399 ~L~~L~Ls~~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~-~L~L 476 (857)
+|+.|++++|.+.. .+|..+..+++|+.|++++|.++.++..... .+..++.|. .|++
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------------------~l~~L~~l~l~L~l 184 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR--------------------VLHQMPLLNLSLDL 184 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH--------------------HHHTCTTCCEEEEC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh--------------------hhhhccccceeeec
Confidence 55555555555544 2455566666666666666666554432111 011223333 6777
Q ss_pred eCCCCccCCCcCCCCCCCCeeeCCCCcceecccc-ccCCCCCcEEeccccccc
Q 003011 477 SFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPAS-IKQFTQMEELILSNCNLL 528 (857)
Q Consensus 477 s~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~~l 528 (857)
++|.+..++.......+|+.|++++|.++.+|.. +..+++|+.|+|++|+..
T Consensus 185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 7777777665555556788888888887777654 467888888888887754
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.2e-18 Score=183.01 Aligned_cols=175 Identities=18% Similarity=0.183 Sum_probs=88.3
Q ss_pred ccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccc
Q 003011 284 NLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAI 363 (857)
Q Consensus 284 ~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l 363 (857)
+|++|+|++|......+..+..+++|+.|++++| .++.++....+++ |+.|++++|.+
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~---------------------L~~L~Ls~N~l 89 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPV---------------------LGTLDLSHNQL 89 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTT---------------------CCEEECCSSCC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCc---------------------CCEEECCCCcC
Confidence 4444444444444444455666666666666653 2333333222333 33333333444
Q ss_pred eecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCccc
Q 003011 364 EEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNED 443 (857)
Q Consensus 364 ~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~ 443 (857)
..+|..+..+++|+.|++++|.+....+..|..+++|+.|++++|.+....+..+..
T Consensus 90 ~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------- 146 (290)
T 1p9a_G 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP----------------------- 146 (290)
T ss_dssp SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-----------------------
T ss_pred CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-----------------------
Confidence 455555555555666666655544433344455555555555555444333333444
Q ss_pred ccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCc-CCCCCCCCeeeCCCCcceeccccccCCCCCcEEec
Q 003011 444 RILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKD-IGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELIL 522 (857)
Q Consensus 444 ~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 522 (857)
+++|+.|+|++|+++.+|.. +..+++|+.|+|++|.++.+|..+..+++|+.|+|
T Consensus 147 ------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 147 ------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp ------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred ------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 44555555555555554432 34555666666666666666655555566666666
Q ss_pred ccccc
Q 003011 523 SNCNL 527 (857)
Q Consensus 523 ~~c~~ 527 (857)
++|+.
T Consensus 203 ~~Np~ 207 (290)
T 1p9a_G 203 HGNPW 207 (290)
T ss_dssp CSCCB
T ss_pred CCCCc
Confidence 66553
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.9e-18 Score=182.32 Aligned_cols=170 Identities=20% Similarity=0.271 Sum_probs=134.5
Q ss_pred CcceEEecCccceecC-ccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 352 NIKQLYLCGTAIEEVP-SSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
+++.|++++|.+..++ ..+..+++|+.|++++|.+.. ++. ...+++|+.|++++|.+. .+|..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 4555555556666553 457788888888888886554 333 277889999999988765 677788899999999999
Q ss_pred CCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCcceeccc
Q 003011 431 STTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 431 ~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~ 509 (857)
+|.++.+|... +.++++|++|+|++|+++.+|. .+..+++|+.|+|++|.++.+|.
T Consensus 109 ~N~l~~l~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 109 FNRLTSLPLGA-----------------------LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SSCCCCCCSST-----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCcCcccCHHH-----------------------HcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 99998877543 4578999999999999999765 46889999999999999999987
Q ss_pred c-ccCCCCCcEEecccccccccCCCC---CCCcceeecccccC
Q 003011 510 S-IKQFTQMEELILSNCNLLQSLPEL---PPSLILLEARNCKQ 548 (857)
Q Consensus 510 ~-l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~C~~ 548 (857)
. +..+++|+.|+|++|+.. .+|.. .++|+.|++.+++-
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred HHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 5 478999999999999865 56642 25788888888763
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=1.4e-17 Score=176.16 Aligned_cols=61 Identities=25% Similarity=0.418 Sum_probs=31.4
Q ss_pred CCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCcceecccc-ccCCCCCcEEecccccc
Q 003011 467 GLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVSLPAS-IKQFTQMEELILSNCNL 527 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~~ 527 (857)
.+++|+.|+|++|.++.++. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 34444444444444444332 244555555555555555555432 45555666666666553
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=7.5e-21 Score=224.82 Aligned_cols=312 Identities=15% Similarity=0.096 Sum_probs=177.3
Q ss_pred CCeeEEEEeCCCCCCCCC-----CC-CCCCccEEEcCCCCCc-----ccccCcCCCCCccEEEccCCCCCccCC-CCCCC
Q 003011 215 DELRYLHWHGYPLKTLPS-----NF-SPENLIELNLPYSKVE-----QMWEGKKESFKLKWIDLHHCQYLIRFP-DPLET 282 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~-----~~-~l~~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l 282 (857)
++|++|++++|.+..... .. .+++|++|++++|.++ .++..+..+++|++|+|++|.... +| .+.++
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence 366666666665433211 11 4566666666666664 233334556666666666665332 33 35556
Q ss_pred CccceeeccCCccC---CccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCc-c---cccccCcc
Q 003011 283 PNLERICLSDCIDL---PCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTE-F---PQFSGNIK 354 (857)
Q Consensus 283 ~~L~~L~L~~~~~~---~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~-~---p~~~~~L~ 354 (857)
++|++|+++++... ...+..++.+++|+.|+++++ ....+|..+ .+++|++|++++|..... + .....+|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 66666666543222 233345556666666666552 333444433 456666666666652111 1 12334666
Q ss_pred eEEecCccce--ecCccccCCCcceEEEccC----------cccccc--ccccccCCCCCCEeeccCCCCCCccccccCC
Q 003011 355 QLYLCGTAIE--EVPSSVECLTELAELYMRQ----------CTRLKS--ISSRICKLKSLHLLSLDDCCRLERFPEITET 420 (857)
Q Consensus 355 ~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~----------~~~l~~--lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~ 420 (857)
.|++. +.+. .++.....+++|++|++++ |..... ++.....+++|+.|+++.+.+....+..+..
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 66666 3232 1333334566677777763 333221 2222344667777777555555444444443
Q ss_pred -CCCCCEEecc----CCccccCCCCccc---ccCcCCcceeeccc-cC-Cc---CCC-CCCCCCCcEEEeeCCCCcc--C
Q 003011 421 -MECLEYFSLA----STTIQEQPSSNED---RILPSSIANWSYGC-RG-LI---LPP-LPGLSSLTGLNLSFRNITE--I 484 (857)
Q Consensus 421 -l~~L~~L~L~----~n~i~~lp~~~~~---~~lp~~L~~L~l~~-~~-~~---~~~-l~~l~~L~~L~Ls~n~l~~--l 484 (857)
+++|+.|+++ .+.++..|...+. ..-.++|+.|++.. .+ .. +.. ...+++|+.|+|++|++++ +
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 6677777775 4455544322000 00015666666632 21 11 011 2347899999999999986 6
Q ss_pred CCcCCCCCCCCeeeCCCCcce--eccccccCCCCCcEEecccccccc
Q 003011 485 PKDIGCLSSLRTLDLRGNNFV--SLPASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 485 p~~l~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~c~~l~ 529 (857)
+..+..+++|+.|+|++|.++ .++..+..+++|+.|+|++|+...
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 666788999999999999976 366666789999999999999543
No 76
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=3.8e-18 Score=187.71 Aligned_cols=194 Identities=20% Similarity=0.233 Sum_probs=142.9
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC--CCCCCCccceeecc-CC
Q 003011 218 RYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLS-DC 293 (857)
Q Consensus 218 r~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~-~~ 293 (857)
+.++.+++.++++|..+ +.++++|+|++|+|+.+|. .+.++++|++|+|++|++.+.+| .|.++++|+++... +|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56778888899998876 5688999999999999986 47889999999999998877777 47788888765444 44
Q ss_pred ccCCccCCcccCCCCCcEEeccCCCCCcccCCCC--CCCCCcEEEcCCCCCCCccccc-----ccCcceEEecCccceec
Q 003011 294 IDLPCIPSSIENFNNLSILCLQGCESLRRFPSNI--HFRSPITLDFSDCLNLTEFPQF-----SGNIKQLYLCGTAIEEV 366 (857)
Q Consensus 294 ~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~~~~l~~~p~~-----~~~L~~L~L~~~~l~~l 366 (857)
......|..++.+++|++|++++| .++.+|... ....+..|++.++..+..++.. ...++.|++++|.++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 444444677889999999999884 556666543 5566778888777777666542 22567788888888888
Q ss_pred CccccCCCcceEEEccCccccccccc-cccCCCCCCEeeccCCCCCCc
Q 003011 367 PSSVECLTELAELYMRQCTRLKSISS-RICKLKSLHLLSLDDCCRLER 413 (857)
Q Consensus 367 p~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~ 413 (857)
|.......+|+.|++.++..++.+|. .|..+++|+.|++++|.+...
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 87776777788888877666666664 456677777777777655443
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.6e-17 Score=174.16 Aligned_cols=196 Identities=19% Similarity=0.220 Sum_probs=114.3
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCccccc-CcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccC
Q 003011 216 ELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWE-GKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSD 292 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~ 292 (857)
.++.++++++.++.+|..+. .+|++|+|++|+++.++. .+..+++|++|+|++|.+. .+| .+.++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCC
Confidence 45556666666666665442 456666666666665553 4566666666666666533 333 245566666666666
Q ss_pred CccCCccCCcccCCCCCcEEeccCCCCCcccCCC-C-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCcc-
Q 003011 293 CIDLPCIPSSIENFNNLSILCLQGCESLRRFPSN-I-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSS- 369 (857)
Q Consensus 293 ~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~- 369 (857)
|......+..+..+++|++|++++|. ++.++.. + .+++|++|++++ |.+..+|..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~---------------------n~l~~~~~~~ 152 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGY---------------------NELQSLPKGV 152 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS---------------------SCCCCCCTTT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCC---------------------CcCCccCHhH
Confidence 55444444445566666666666532 3333321 1 334444444333 344444443
Q ss_pred ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccc
Q 003011 370 VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
+..+++|+.|++++|......+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 556677777777777655555555677777777777777666655556777778888888877664
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=3.1e-18 Score=177.72 Aligned_cols=99 Identities=18% Similarity=0.214 Sum_probs=63.5
Q ss_pred EeeccCC-CCCCccccccCCCCCCC-EEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCC
Q 003011 402 LLSLDDC-CRLERFPEITETMECLE-YFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFR 479 (857)
Q Consensus 402 ~L~Ls~~-~~~~~~~~~l~~l~~L~-~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n 479 (857)
.|++++| .+....+..+..+++|+ .|++++|.++.+|...+. . ++|+.|++++|
T Consensus 134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~-----------------------~-~~L~~L~L~~n 189 (239)
T 2xwt_C 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN-----------------------G-TKLDAVYLNKN 189 (239)
T ss_dssp EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT-----------------------T-CEEEEEECTTC
T ss_pred EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC-----------------------C-CCCCEEEcCCC
Confidence 5555555 33333333456666666 677766666666654322 2 56777777777
Q ss_pred C-CccCC-CcCCCC-CCCCeeeCCCCcceeccccccCCCCCcEEeccccc
Q 003011 480 N-ITEIP-KDIGCL-SSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCN 526 (857)
Q Consensus 480 ~-l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 526 (857)
. ++.+| ..+..+ ++|+.|++++|.++.+|.. .+++|+.|+++++.
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence 4 77754 456777 7888888888888877755 67778888877765
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=3.6e-18 Score=180.90 Aligned_cols=137 Identities=19% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcc
Q 003011 372 CLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIA 451 (857)
Q Consensus 372 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~ 451 (857)
.+++|++|++++|...+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++...
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 176 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV---------- 176 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred CCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH----------
Confidence 3444444444444433333333455556666666666555444455566666666777666666555432
Q ss_pred eeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCcceeccccccCCCCCcEEeccccccccc
Q 003011 452 NWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQS 530 (857)
Q Consensus 452 ~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~ 530 (857)
+.++++|+.|++++|.+.+++. .+..+++|+.|++++|.+. ..+++|+.|+++.|...+.
T Consensus 177 -------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 177 -------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp -------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGG
T ss_pred -------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCc
Confidence 3456777777777777777543 4677888888888888755 2355788888888887777
Q ss_pred CCCCCCC
Q 003011 531 LPELPPS 537 (857)
Q Consensus 531 lp~l~~s 537 (857)
+|....+
T Consensus 238 ip~~~~~ 244 (272)
T 3rfs_A 238 VRNSAGS 244 (272)
T ss_dssp BBCTTSC
T ss_pred ccCcccc
Confidence 7754433
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=182.96 Aligned_cols=135 Identities=21% Similarity=0.283 Sum_probs=92.5
Q ss_pred cccCCCcceEEEccCcccccc--cc--ccccCCCCCCEeeccCCCCCCcccc----ccCCCCCCCEEeccCCccccC-CC
Q 003011 369 SVECLTELAELYMRQCTRLKS--IS--SRICKLKSLHLLSLDDCCRLERFPE----ITETMECLEYFSLASTTIQEQ-PS 439 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~Ls~~~~~~~~~~----~l~~l~~L~~L~L~~n~i~~l-p~ 439 (857)
.++.+++|++|++++|...+. ++ ..+..+++|++|++++|.+.. ++. .++.+++|++|++++|.++.. |.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 345555666666666654332 21 223566777777777776542 222 246677888888888887765 54
Q ss_pred CcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcE
Q 003011 440 SNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEE 519 (857)
Q Consensus 440 ~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 519 (857)
.+.. +..+++|++|+|++|+++.+|..+. ++|+.|+|++|.++.+|. +..+++|+.
T Consensus 243 ~~~~---------------------~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 243 SAPR---------------------CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp CCSS---------------------CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred hHHh---------------------ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 4332 2334788888888888888887764 789999999999888875 678889999
Q ss_pred Eeccccccc
Q 003011 520 LILSNCNLL 528 (857)
Q Consensus 520 L~L~~c~~l 528 (857)
|+|++|+..
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 999998764
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=1.2e-17 Score=176.77 Aligned_cols=100 Identities=17% Similarity=0.070 Sum_probs=48.4
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 216 ELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
+|+.|+++++.++.++....+++|++|++++|.++.++ .+..+++|++|+|++|.+....+ .+.++++|++|++++|.
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc
Confidence 45555555555555544335555555555555555542 44555555555555554332222 14445555555555544
Q ss_pred cCCccCCcccCCCCCcEEeccC
Q 003011 295 DLPCIPSSIENFNNLSILCLQG 316 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~ 316 (857)
.....+..++.+++|++|++++
T Consensus 121 l~~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 121 LQSLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccCHHHhccCCCCCEEECCC
Confidence 4333333344444444444444
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.75 E-value=1e-20 Score=223.77 Aligned_cols=357 Identities=14% Similarity=0.139 Sum_probs=197.5
Q ss_pred hcCCCCccEEEEecCCccccccceeecCCccc-cccCCeeEEEEeCC-CCCC--CCCCC-CCCCccEEEcCCCCCcc---
Q 003011 180 FACMTNLRMLKFYVPKLSKLSDVKVHLHNGLD-YLSDELRYLHWHGY-PLKT--LPSNF-SPENLIELNLPYSKVEQ--- 251 (857)
Q Consensus 180 f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~l~~L~~L~Ls~n~l~~--- 251 (857)
+..+++|+.|+++++.+ ....+..+. .+ ++|++|++++| .+.. ++..+ .+++|++|+|++|.++.
T Consensus 101 ~~~~~~L~~L~L~~~~~------~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVV------TDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHHCTTCCEEEEESCBC------CHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred HHhCCCCCeEEeeCcEE------cHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 44667777777777652 222222332 34 47777777777 3332 33333 56777888887776553
Q ss_pred --cccCcCCCCCccEEEccCCCCCccCC-----C-CCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCC----
Q 003011 252 --MWEGKKESFKLKWIDLHHCQYLIRFP-----D-PLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCES---- 319 (857)
Q Consensus 252 --l~~~~~~l~~L~~L~Ls~~~~l~~lp-----~-l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~---- 319 (857)
++.....+++|+.|++++|. ..++ . +..+++|++|++++|.....++..+..+++|+.|++..|..
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred HHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 33333466777788877775 1111 1 23457777787777755555666677777777777655432
Q ss_pred --CcccCCCC-CCCCCcEE-EcCCCCCCCcccc---cccCcceEEecCcccee--cCccccCCCcceEEEccCccccccc
Q 003011 320 --LRRFPSNI-HFRSPITL-DFSDCLNLTEFPQ---FSGNIKQLYLCGTAIEE--VPSSVECLTELAELYMRQCTRLKSI 390 (857)
Q Consensus 320 --l~~lp~~~-~l~~L~~L-~Ls~~~~l~~~p~---~~~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~L~~~~~l~~l 390 (857)
+..++..+ .+++|+.| .+.+.. ...++. ...+|++|++++|.+.. ++..+..+++|++|++++|.....+
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l 330 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGL 330 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHH
Confidence 11122222 45566665 222211 122332 23467777777776553 2333456777777777776222223
Q ss_pred cccccCCCCCCEeeccCC--------CCCC-c-cccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeecc----
Q 003011 391 SSRICKLKSLHLLSLDDC--------CRLE-R-FPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYG---- 456 (857)
Q Consensus 391 p~~l~~l~~L~~L~Ls~~--------~~~~-~-~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~---- 456 (857)
+.....+++|+.|++.+| .... . +......+++|+.|.+..+.++......... -.++|+.|++.
T Consensus 331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTCCEEEEEESST
T ss_pred HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCcceeEeecccC
Confidence 332334677777777432 1111 1 1111234677777776666655211100000 01566666664
Q ss_pred --ccCCcCCC--------CCCCCCCcEEEeeCCCCcc-CCCcCC-CCCCCCeeeCCCCcce--eccccccCCCCCcEEec
Q 003011 457 --CRGLILPP--------LPGLSSLTGLNLSFRNITE-IPKDIG-CLSSLRTLDLRGNNFV--SLPASIKQFTQMEELIL 522 (857)
Q Consensus 457 --~~~~~~~~--------l~~l~~L~~L~Ls~n~l~~-lp~~l~-~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L 522 (857)
|+.+...+ +.++++|+.|+|++ .+++ .+..+. .+++|+.|+|++|.++ .++.....+++|+.|+|
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L 488 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI 488 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence 12222110 34567888888876 5554 223333 3788888888888875 23322366888888888
Q ss_pred ccccccccCC----CCCCCcceeecccccC
Q 003011 523 SNCNLLQSLP----ELPPSLILLEARNCKQ 548 (857)
Q Consensus 523 ~~c~~l~~lp----~l~~sL~~L~i~~C~~ 548 (857)
++|+.....+ .-.++|+.|++++|+.
T Consensus 489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 489 RDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp ESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 8888632211 2246788888888864
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=1.6e-17 Score=172.40 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=118.8
Q ss_pred CcceEEecCccceecCc-cccCCCcceEEEccCcccccccc-ccccCCCCCCEeeccC-CCCCCccccccCCCCCCCEEe
Q 003011 352 NIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSIS-SRICKLKSLHLLSLDD-CCRLERFPEITETMECLEYFS 428 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~-~~~~~~~~~~l~~l~~L~~L~ 428 (857)
+++.|++++|.++.+|. .+..+++|++|++++|..+..++ ..+..+++|+.|++++ |.+....+..+..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 55555555556665554 35556666666666665233333 3455666666666665 444444344555666666666
Q ss_pred ccCCccccCCCCcccccCcCCcc---eeecccc-CC-cCCC--CCCCCCCc-EEEeeCCCCccCCCcCCCCCCCCeeeCC
Q 003011 429 LASTTIQEQPSSNEDRILPSSIA---NWSYGCR-GL-ILPP--LPGLSSLT-GLNLSFRNITEIPKDIGCLSSLRTLDLR 500 (857)
Q Consensus 429 L~~n~i~~lp~~~~~~~lp~~L~---~L~l~~~-~~-~~~~--l~~l~~L~-~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls 500 (857)
+++|.++.+|. +.. + ++|+ .|+++.+ .+ .++. +.++++|+ .|++++|+++.+|......++|+.|+++
T Consensus 112 l~~n~l~~lp~-~~~--l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTK--V-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEECCCSCCC-CTT--C-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CCCCCCccccc-ccc--c-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 66666665554 111 1 3333 4555333 22 1222 66788888 9999999888887665445889999999
Q ss_pred CCc-ceecc-ccccCC-CCCcEEecccccccccCCCCCCCcceeecccccCC
Q 003011 501 GNN-FVSLP-ASIKQF-TQMEELILSNCNLLQSLPELPPSLILLEARNCKQL 549 (857)
Q Consensus 501 ~n~-l~~lp-~~l~~l-~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C~~L 549 (857)
+|. ++.+| ..+..+ ++|+.|++++|+....-+...++|+.|++.++..|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC---
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccCC
Confidence 995 88776 446778 88999999988765433345678888888877653
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=2.9e-17 Score=177.18 Aligned_cols=194 Identities=15% Similarity=0.143 Sum_probs=112.5
Q ss_pred CeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCcc
Q 003011 216 ELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCID 295 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~ 295 (857)
+|++|+++++.++.+|....+++|++|+|++|.++.++. +..+++|++|+|++|. +..++.+..+++|++|++++|..
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l 119 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQI 119 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSCC
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCCC
Confidence 455555555555555532255556666666665555554 5555666666666655 33344555555566666655543
Q ss_pred CCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCc
Q 003011 296 LPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTE 375 (857)
Q Consensus 296 ~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~ 375 (857)
.. ++. ++.+++|+.|++++| .++.++....+++|+.| ++++|.++.++. +..+++
T Consensus 120 ~~-~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L---------------------~l~~n~l~~~~~-l~~l~~ 174 (308)
T 1h6u_A 120 TD-VTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYL---------------------SIGNAQVSDLTP-LANLSK 174 (308)
T ss_dssp CC-CGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEE---------------------ECCSSCCCCCGG-GTTCTT
T ss_pred CC-chh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEE---------------------EccCCcCCCChh-hcCCCC
Confidence 33 222 555566666666553 22333221133333333 333344444444 566777
Q ss_pred ceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCC
Q 003011 376 LAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSS 440 (857)
Q Consensus 376 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~ 440 (857)
|+.|++++|......+ +..+++|+.|++++|.+.... .+..+++|+.|++++|.++..|..
T Consensus 175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCEE
T ss_pred CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCee
Confidence 7777777776544332 677888888888888766544 378888899999999888876654
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=3.7e-19 Score=194.56 Aligned_cols=221 Identities=16% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCccEEEEecCCccccccceeecCCccccc-cCCeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcc--cccCcCCC
Q 003011 184 TNLRMLKFYVPKLSKLSDVKVHLHNGLDYL-SDELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQ--MWEGKKES 259 (857)
Q Consensus 184 ~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l-~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~--l~~~~~~l 259 (857)
..++.|+++++.+ . +..+..+ ..+++.|++++|.+...+..+ .+++|++|++++|.+.. ++..+..+
T Consensus 47 ~~~~~l~l~~~~~------~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 117 (336)
T 2ast_B 47 SLWQTLDLTGKNL------H---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117 (336)
T ss_dssp TTSSEEECTTCBC------C---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTB
T ss_pred hhheeeccccccC------C---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhC
Confidence 3467777766542 1 2222222 135667777766665553333 66666666666666652 55555666
Q ss_pred CCccEEEccCCCCCccCC-CCCCCCccceeeccCCccCC--ccCCcccCCCCCcEEeccCCCCCcc--cCCCC-CCC-CC
Q 003011 260 FKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDLP--CIPSSIENFNNLSILCLQGCESLRR--FPSNI-HFR-SP 332 (857)
Q Consensus 260 ~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~~--~~p~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~-~L 332 (857)
++|++|+|++|.+....+ .+..+++|++|++++|.... .++..+..+++|++|++++|..++. ++..+ .++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 666666666665443333 34555666666666653222 2444455555555555555423321 22211 233 34
Q ss_pred cEEEcCCCCCCCcccccccCcceEEecCccc--eecCccccCCCcceEEEccCcc-ccccccccccCCCCCCEeeccCCC
Q 003011 333 ITLDFSDCLNLTEFPQFSGNIKQLYLCGTAI--EEVPSSVECLTELAELYMRQCT-RLKSISSRICKLKSLHLLSLDDCC 409 (857)
Q Consensus 333 ~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l--~~lp~~l~~l~~L~~L~L~~~~-~l~~lp~~l~~l~~L~~L~Ls~~~ 409 (857)
++|++++|.. .+ ..+|..+..+++|+.|++++|. .....+..+..+++|+.|++++|.
T Consensus 198 ~~L~l~~~~~-------------------~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 198 TQLNLSGYRK-------------------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CEEECCSCGG-------------------GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CEEEeCCCcc-------------------cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 4444333310 11 2233444455566666666655 333444455555666666666553
Q ss_pred CC-CccccccCCCCCCCEEeccCC
Q 003011 410 RL-ERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 410 ~~-~~~~~~l~~l~~L~~L~L~~n 432 (857)
.. ......+..+++|+.|++++|
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc
Confidence 11 111123444555555555554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.9e-17 Score=178.63 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=41.9
Q ss_pred CCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccc
Q 003011 467 GLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~ 527 (857)
.+++|+.|++++|.+++++. +..+++|+.|+|++|.++.++ .+..+++|+.|++++|+.
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence 45666666666666666554 566777777777777777776 377778888888888775
No 87
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.73 E-value=6.2e-19 Score=205.53 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=107.2
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHH-HhhcCChhHHHHHHHhHhccCHHHHHHhh-----------h
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHN-LKRISDRDVYEVLKISYDELNWEEKNIFL-----------D 69 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~-L~~~~~~~i~~~Lk~SYd~L~~~~K~cFl-----------~ 69 (857)
+++++||++|+|+||||+++|+.|+.++. +|...+.. ++..+..+|.++|++||++||.++|.||+ |
T Consensus 317 ~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ 395 (549)
T 2a5y_B 317 DVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAF 395 (549)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhh
Confidence 47999999999999999999999988753 33344433 44446678999999999999999999999 9
Q ss_pred hhcCCCCCCHHHHHHHhcCC--Cc------------hHHHHHHhhcccceeeecC---CeEeccHHHHHHHHHHhhhccC
Q 003011 70 IACFFKGEDKDYVTRIQDDP--DF------------VRYVLNVLVNKSLITISSY---NKLEMHDLLEEMGREIVRCESV 132 (857)
Q Consensus 70 ~a~Fp~~~~~~~l~~~~~~~--g~------------~~~~l~~Li~rsLi~~~~~---~~~~MHDLl~dl~~~i~~~e~~ 132 (857)
||+||++++.+ +++|+|+ || +..||++|++||||+.... .+|+|||++|++|++++.+++.
T Consensus 396 ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 396 AVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp GGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred eeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999777 8899998 66 2249999999999998743 4799999999999999988763
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=6.3e-17 Score=177.96 Aligned_cols=233 Identities=18% Similarity=0.123 Sum_probs=141.1
Q ss_pred cEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCC-cccCCCCCcEEeccC
Q 003011 240 IELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPS-SIENFNNLSILCLQG 316 (857)
Q Consensus 240 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~-~i~~l~~L~~L~L~~ 316 (857)
++++.++++++++|.++ .+++++|+|++|++ +.+| .|.++++|++|+|++|.+.+.+|. +|.++++|+.+.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888888888776 36788888888874 4555 477888888888888777666654 456676666554444
Q ss_pred CCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccC
Q 003011 317 CESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICK 396 (857)
Q Consensus 317 c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~ 396 (857)
++.++.++.. .+..+++|++|++++|.+....+..+..
T Consensus 89 ~N~l~~l~~~------------------------------------------~f~~l~~L~~L~l~~n~l~~~~~~~~~~ 126 (350)
T 4ay9_X 89 ANNLLYINPE------------------------------------------AFQNLPNLQYLLISNTGIKHLPDVHKIH 126 (350)
T ss_dssp ETTCCEECTT------------------------------------------SBCCCTTCCEEEEEEECCSSCCCCTTCC
T ss_pred CCcccccCch------------------------------------------hhhhccccccccccccccccCCchhhcc
Confidence 4445444332 2333344444444444333222222333
Q ss_pred CCCCCEeeccCCCCCCccc-cccCCC-CCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEE
Q 003011 397 LKSLHLLSLDDCCRLERFP-EITETM-ECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGL 474 (857)
Q Consensus 397 l~~L~~L~Ls~~~~~~~~~-~~l~~l-~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L 474 (857)
..++..|++.++.....++ ..+..+ ..++.|++++|.|+.+|...+. ..+|+.|
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~------------------------~~~L~~l 182 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN------------------------GTQLDEL 182 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST------------------------TEEEEEE
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc------------------------ccchhHH
Confidence 3444445554443333333 233343 3467777777777777665432 3567777
Q ss_pred EeeC-CCCccCCC-cCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccccCCCCC--CCcceeec
Q 003011 475 NLSF-RNITEIPK-DIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQSLPELP--PSLILLEA 543 (857)
Q Consensus 475 ~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~lp~l~--~sL~~L~i 543 (857)
++.+ |.+..+|. .+..+++|+.|+|++|.|+.+|.. .+.+|+.|.+.+|..++.+|.+. ++|+.+++
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 7764 55666764 457777888888888887777753 36677777777777777777432 45555554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=4.8e-18 Score=183.64 Aligned_cols=199 Identities=18% Similarity=0.156 Sum_probs=112.9
Q ss_pred CccEEEccCCCCCccCC-CC--CCCCccceeeccCCccCCccC----CcccCCCCCcEEeccCCCCCcccCCCC-CCCCC
Q 003011 261 KLKWIDLHHCQYLIRFP-DP--LETPNLERICLSDCIDLPCIP----SSIENFNNLSILCLQGCESLRRFPSNI-HFRSP 332 (857)
Q Consensus 261 ~L~~L~Ls~~~~l~~lp-~l--~~l~~L~~L~L~~~~~~~~~p----~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L 332 (857)
+|++|+|++|.+....| .+ ..+++|++|+|++|...+..+ ..+..+++|++|++++|......|..+ .+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555554444444 22 445555555555544443322 223345555555555543322222222 44455
Q ss_pred cEEEcCCCCCCCcccccccCcceEEecCccceec--CccccCCCcceEEEccCccccccccc----cccCCCCCCEeecc
Q 003011 333 ITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEV--PSSVECLTELAELYMRQCTRLKSISS----RICKLKSLHLLSLD 406 (857)
Q Consensus 333 ~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~Ls 406 (857)
++|++++|...... .+ +..++.+++|++|++++|... .++. .+..+++|++|+|+
T Consensus 172 ~~L~Ls~N~l~~~~------------------~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 172 TSLDLSDNPGLGER------------------GLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp CEEECCSCTTCHHH------------------HHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECT
T ss_pred CEEECCCCCCccch------------------hhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECC
Confidence 55555544322100 01 111244555666666665442 2221 13566777777777
Q ss_pred CCCCCCccccccCCC---CCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc
Q 003011 407 DCCRLERFPEITETM---ECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE 483 (857)
Q Consensus 407 ~~~~~~~~~~~l~~l---~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 483 (857)
+|.+....|..+..+ ++|++|++++|.++.+|..+ .++|+.|+|++|++++
T Consensus 233 ~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--------------------------~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 233 HNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--------------------------PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp TSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--------------------------CSCCSCEECCSCCCCS
T ss_pred CCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh--------------------------cCCCCEEECCCCcCCC
Confidence 777776666666655 58888888888888776642 2678888899998888
Q ss_pred CCCcCCCCCCCCeeeCCCCcce
Q 003011 484 IPKDIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 484 lp~~l~~l~~L~~L~Ls~n~l~ 505 (857)
+|. +..+++|+.|+|++|+++
T Consensus 287 ~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 287 APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCC-TTSCCCCSCEECSSTTTS
T ss_pred Cch-hhhCCCccEEECcCCCCC
Confidence 765 678899999999999875
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.2e-18 Score=190.63 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=102.9
Q ss_pred CCeeEEEEeCCCCCCCCCCC-CC--CCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCcc-CC-CCCCCCccceee
Q 003011 215 DELRYLHWHGYPLKTLPSNF-SP--ENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIR-FP-DPLETPNLERIC 289 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~-~l--~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~-lp-~l~~l~~L~~L~ 289 (857)
..++.|+++++.+. |..+ .+ .+++.|++++|.+...+..+..+++|++|+|++|.+... +| .+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34666777666554 3323 33 667777777776666655566666677777766664332 33 355566666666
Q ss_pred ccCCccCCccCCcccCCCCCcEEeccCCCCCcc--cCCCC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCcccee-
Q 003011 290 LSDCIDLPCIPSSIENFNNLSILCLQGCESLRR--FPSNI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEE- 365 (857)
Q Consensus 290 L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~- 365 (857)
+++|......+..++.+++|++|++++|..++. ++..+ .+++|++|++++|. .++.
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--------------------~l~~~ 184 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF--------------------DFTEK 184 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT--------------------TCCHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC--------------------CcChH
Confidence 666655555555566666666666666533331 22212 33444444444431 2221
Q ss_pred -cCccccCCC-cceEEEccCcc--cc-ccccccccCCCCCCEeeccCCC-CCCccccccCCCCCCCEEeccCC
Q 003011 366 -VPSSVECLT-ELAELYMRQCT--RL-KSISSRICKLKSLHLLSLDDCC-RLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 366 -lp~~l~~l~-~L~~L~L~~~~--~l-~~lp~~l~~l~~L~~L~Ls~~~-~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
++..+..++ +|++|++++|. .. ..+|..+..+++|+.|++++|. .....+..+..+++|+.|++++|
T Consensus 185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 233344555 66666666653 22 3344444555566666666555 33333444444444444444444
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=2.7e-19 Score=199.72 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=134.6
Q ss_pred CeeEEEEeCCCCCCCCCCC-CCCCccEEEcCCCCCcc-----cccCcCCCCCccEEEccCCCCC---ccCC-C-------
Q 003011 216 ELRYLHWHGYPLKTLPSNF-SPENLIELNLPYSKVEQ-----MWEGKKESFKLKWIDLHHCQYL---IRFP-D------- 278 (857)
Q Consensus 216 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~~~~l---~~lp-~------- 278 (857)
.|++..+....+..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|... ..+| .
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3444444444455555555 56667777777776663 3344566677777777665321 1222 1
Q ss_pred CCCCCccceeeccCCccCC----ccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcc
Q 003011 279 PLETPNLERICLSDCIDLP----CIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIK 354 (857)
Q Consensus 279 l~~l~~L~~L~L~~~~~~~----~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~ 354 (857)
+..+++|++|+|++|.... .+|..+..+++|++|+|++|.. + ...+
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~----------------------~~~~------- 139 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-G----------------------PQAG------- 139 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC-H----------------------HHHH-------
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC-C----------------------HHHH-------
Confidence 1344555555555554443 2344444444444444444321 1 0000
Q ss_pred eEEecCccceecCccccCC---------CcceEEEccCcccc-cccc---ccccCCCCCCEeeccCCCCCC-----cccc
Q 003011 355 QLYLCGTAIEEVPSSVECL---------TELAELYMRQCTRL-KSIS---SRICKLKSLHLLSLDDCCRLE-----RFPE 416 (857)
Q Consensus 355 ~L~L~~~~l~~lp~~l~~l---------~~L~~L~L~~~~~l-~~lp---~~l~~l~~L~~L~Ls~~~~~~-----~~~~ 416 (857)
..++..+..+ ++|++|++++|... ..++ ..+..+++|+.|++++|.+.. ..+.
T Consensus 140 ---------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 140 ---------AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp ---------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 0011111122 45555555555543 2222 234455566666666665442 2233
Q ss_pred ccCCCCCCCEEeccCCccc-----cCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCC
Q 003011 417 ITETMECLEYFSLASTTIQ-----EQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPK 486 (857)
Q Consensus 417 ~l~~l~~L~~L~L~~n~i~-----~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~ 486 (857)
.+..+++|+.|+|++|.++ .+|.. +..+++|++|+|++|.++. ++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~------------------------l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIA------------------------LKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHH------------------------GGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHH------------------------HccCCCcCEEECCCCCCchhhHHHHHH
Confidence 5555666666666666552 22221 2345667777777777665 345
Q ss_pred cC--CCCCCCCeeeCCCCccee-----ccccc-cCCCCCcEEecccccccccC
Q 003011 487 DI--GCLSSLRTLDLRGNNFVS-----LPASI-KQFTQMEELILSNCNLLQSL 531 (857)
Q Consensus 487 ~l--~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~c~~l~~l 531 (857)
.+ +.+++|+.|+|++|.++. +|..+ .++++|+.|+|++|+.....
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55 447888888888888775 77776 55788888888888765443
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=8.2e-20 Score=215.96 Aligned_cols=366 Identities=15% Similarity=0.093 Sum_probs=240.7
Q ss_pred hHhhcCCCCccEEEEecCCccccccceeecCCc------------cccccCCeeEEEEeCCCCCCC-CCCC--CCCCccE
Q 003011 177 SRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNG------------LDYLSDELRYLHWHGYPLKTL-PSNF--SPENLIE 241 (857)
Q Consensus 177 ~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~------------l~~l~~~Lr~L~l~~~~l~~l-p~~~--~l~~L~~ 241 (857)
...+..+++|+.|++.++.... +. ...|.. ...+ ++|++|+++++.+... +..+ .+++|++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~--~~-~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFA--DF-NLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGG--GG-TCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred HHHHhhCCCceEEeccCCCchh--hc-ccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 3567888999999999875210 00 001111 1234 5899999999986532 2223 5789999
Q ss_pred EEcCCC-CCcc--cccCcCCCCCccEEEccCCCCCcc----CCC-CCCCCccceeeccCCc--cC-CccCCcccCCCCCc
Q 003011 242 LNLPYS-KVEQ--MWEGKKESFKLKWIDLHHCQYLIR----FPD-PLETPNLERICLSDCI--DL-PCIPSSIENFNNLS 310 (857)
Q Consensus 242 L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~----lp~-l~~l~~L~~L~L~~~~--~~-~~~p~~i~~l~~L~ 310 (857)
|+|++| .++. ++.....+++|++|+|++|.+... ++. ...+++|++|++++|. .. ..++..+..+++|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999998 5654 555556899999999999984332 232 3367899999999986 11 11222235679999
Q ss_pred EEeccCCCCCcccCCCC-CCCCCcEEEcCCCCCC------Cccc---ccccCcceE-EecCccceecCccccCCCcceEE
Q 003011 311 ILCLQGCESLRRFPSNI-HFRSPITLDFSDCLNL------TEFP---QFSGNIKQL-YLCGTAIEEVPSSVECLTELAEL 379 (857)
Q Consensus 311 ~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l------~~~p---~~~~~L~~L-~L~~~~l~~lp~~l~~l~~L~~L 379 (857)
+|++++|..++.+|..+ .+++|+.|+++.+..- ..++ ....+|+.| .+.+.....++..+..+++|++|
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L 294 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEE
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEE
Confidence 99999987777666555 7889999998876431 1111 122366666 45544445566666678999999
Q ss_pred EccCcccccc-ccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC---------CccccCCCCcccccCcCC
Q 003011 380 YMRQCTRLKS-ISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS---------TTIQEQPSSNEDRILPSS 449 (857)
Q Consensus 380 ~L~~~~~l~~-lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~---------n~i~~lp~~~~~~~lp~~ 449 (857)
++++|..... ++..+..+++|+.|++++|-....++.....+++|+.|++.+ +.++......... -.++
T Consensus 295 ~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~-~~~~ 373 (594)
T 2p1m_B 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM-GCPK 373 (594)
T ss_dssp ECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH-HCTT
T ss_pred EccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH-hchh
Confidence 9999984433 333366889999999999832233444445689999999944 3333110000000 0277
Q ss_pred cceeeccccCCcCCC---C-CCCCCCcEEEee--C----CCCccCCC------cCCCCCCCCeeeCCCCcce-ecccccc
Q 003011 450 IANWSYGCRGLILPP---L-PGLSSLTGLNLS--F----RNITEIPK------DIGCLSSLRTLDLRGNNFV-SLPASIK 512 (857)
Q Consensus 450 L~~L~l~~~~~~~~~---l-~~l~~L~~L~Ls--~----n~l~~lp~------~l~~l~~L~~L~Ls~n~l~-~lp~~l~ 512 (857)
|+.|.+.|+.+.... + ..+++|+.|+++ + +.+++.|. .+..+++|+.|+|++ .++ ..+..+.
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~ 452 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG 452 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence 888877777654322 2 257899999999 3 56664432 256789999999987 554 2233444
Q ss_pred C-CCCCcEEecccccccccCC----CCCCCcceeecccccC
Q 003011 513 Q-FTQMEELILSNCNLLQSLP----ELPPSLILLEARNCKQ 548 (857)
Q Consensus 513 ~-l~~L~~L~L~~c~~l~~lp----~l~~sL~~L~i~~C~~ 548 (857)
. +++|+.|+|++|......+ ...++|+.|++++|+.
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4 8999999999998643222 2257899999999974
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.9e-16 Score=164.10 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=113.4
Q ss_pred CcceEEecCccceecCc-cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 352 NIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
+++.|++++|.+..++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 55666666666666544 46777778888887777766666667777788888888777776666677777788888888
Q ss_pred CCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCcceeccc
Q 003011 431 STTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 431 ~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~ 509 (857)
+|.++.+|... +.++++|++|+|++|+++++|. .++.+++|+.|+|++|.++.+|.
T Consensus 116 ~N~l~~~~~~~-----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 116 GNQLKSLPSGV-----------------------FDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SSCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcCCCcChhH-----------------------hccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 87777666543 3467788888888888888665 57788888888888888876664
Q ss_pred -cccCCCCCcEEecccccccc
Q 003011 510 -SIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 510 -~l~~l~~L~~L~L~~c~~l~ 529 (857)
.+..+++|+.|+|++|+...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCT
T ss_pred HHHhCCCCCCEEEeeCCceeC
Confidence 56778888888888887543
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=7.4e-19 Score=196.21 Aligned_cols=211 Identities=16% Similarity=0.090 Sum_probs=148.1
Q ss_pred eecCCccccccCCeeEEEEeCCCCCC-----CCCCC-CCCCccEEEcCCCCCcc----cccCc-------CCCCCccEEE
Q 003011 204 VHLHNGLDYLSDELRYLHWHGYPLKT-----LPSNF-SPENLIELNLPYSKVEQ----MWEGK-------KESFKLKWID 266 (857)
Q Consensus 204 ~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~l~~L~~L~Ls~n~l~~----l~~~~-------~~l~~L~~L~ 266 (857)
..++..+..+ ++|++|++++|.+.. ++..+ .+++|++|+|++|.+.. +|.++ ..+++|++|+
T Consensus 22 ~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 3455666666 589999999998865 33445 78999999999986653 34444 7899999999
Q ss_pred ccCCCCCc----cCC-CCCCCCccceeeccCCccCCccCCc----ccCC---------CCCcEEeccCCCCC-cccCC--
Q 003011 267 LHHCQYLI----RFP-DPLETPNLERICLSDCIDLPCIPSS----IENF---------NNLSILCLQGCESL-RRFPS-- 325 (857)
Q Consensus 267 Ls~~~~l~----~lp-~l~~l~~L~~L~L~~~~~~~~~p~~----i~~l---------~~L~~L~L~~c~~l-~~lp~-- 325 (857)
|++|.+.. .+| .+..+++|++|+|++|......+.. +..+ ++|++|++++|... ..+|.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999765 244 5778999999999999875433333 3333 77888888775432 12221
Q ss_pred -CC-CCCCCcEEEcCCCCCCCcccccccCcceEEecCccce------ecCccccCCCcceEEEccCcccc----cccccc
Q 003011 326 -NI-HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIE------EVPSSVECLTELAELYMRQCTRL----KSISSR 393 (857)
Q Consensus 326 -~~-~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~------~lp~~l~~l~~L~~L~L~~~~~l----~~lp~~ 393 (857)
.+ .+++|++|++++ |.+. -+|..+..+++|+.|+|++|.+. ..+|..
T Consensus 181 ~~l~~~~~L~~L~L~~---------------------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQ---------------------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp HHHHHCTTCCEEECCS---------------------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred HHHHhCCCcCEEECcC---------------------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 11 344555555544 4444 13336777888888888888764 567777
Q ss_pred ccCCCCCCEeeccCCCCCCc----ccccc--CCCCCCCEEeccCCcccc
Q 003011 394 ICKLKSLHLLSLDDCCRLER----FPEIT--ETMECLEYFSLASTTIQE 436 (857)
Q Consensus 394 l~~l~~L~~L~Ls~~~~~~~----~~~~l--~~l~~L~~L~L~~n~i~~ 436 (857)
+..+++|+.|+|++|.+... ++..+ +.+++|+.|++++|.++.
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 88888888888888877654 45666 348888888888888875
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.3e-18 Score=192.40 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=36.4
Q ss_pred CCCcEEEeeCCCCccCC-----CcCCCCCCCCeeeCCCCcc--------eeccccccCCCCCcEEecccccccc
Q 003011 469 SSLTGLNLSFRNITEIP-----KDIGCLSSLRTLDLRGNNF--------VSLPASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 469 ~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~Ls~n~l--------~~lp~~l~~l~~L~~L~L~~c~~l~ 529 (857)
++|++|+|++|.+.+.+ ..+..+++|+.|+|++|.+ ..++..+..+++|+.|++++|+...
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 35666666666655522 2345566666777666662 2344456677777777777776443
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=8.6e-16 Score=160.51 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=149.2
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
+.+.++++++.++.+|..+. ++|+.|++++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 56788999999999998765 6899999999999888888899999999999999999988888899999999999999
Q ss_pred CccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCc-CCCCCCCCeeeCCCCcceeccc-
Q 003011 432 TTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKD-IGCLSSLRTLDLRGNNFVSLPA- 509 (857)
Q Consensus 432 n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~- 509 (857)
|.++.+|... +..+++|++|+|++|.++.+|.. +..+++|+.|+|++|.++.+|.
T Consensus 93 n~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 149 (251)
T 3m19_A 93 NQLASLPLGV-----------------------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG 149 (251)
T ss_dssp SCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcccccChhH-----------------------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH
Confidence 9999877644 45789999999999999997754 6899999999999999998886
Q ss_pred cccCCCCCcEEecccccccccCCCC---CCCcceeeccccc
Q 003011 510 SIKQFTQMEELILSNCNLLQSLPEL---PPSLILLEARNCK 547 (857)
Q Consensus 510 ~l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~C~ 547 (857)
.+..+++|+.|+|++|+.....+.. .++|+.|++++++
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5889999999999999876554432 3678888888775
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=6.9e-16 Score=179.04 Aligned_cols=184 Identities=22% Similarity=0.238 Sum_probs=103.5
Q ss_pred CccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccE
Q 003011 185 NLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKW 264 (857)
Q Consensus 185 ~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 264 (857)
+|+.|++++|.+ . .+|..+ +++|++|++++|.++.+| -.+++|++|+|++|+++.+|. +.. +|++
T Consensus 60 ~L~~L~Ls~n~L------~-~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNL------S-SLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCC------S-CCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCE
T ss_pred CccEEEeCCCCC------C-ccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCE
Confidence 777777777762 1 245443 246777777777777777 235677777777777777766 444 7777
Q ss_pred EEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCC
Q 003011 265 IDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLT 344 (857)
Q Consensus 265 L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~ 344 (857)
|+|++|.+.. +|. .+++|++|+|++|...+ +|. .+++|+.|+|++| .++.+|. +. ++|+.|++++|
T Consensus 125 L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~N---- 190 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVSTN---- 190 (571)
T ss_dssp EECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCSS----
T ss_pred EECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcCC----
Confidence 7777776433 555 56677777777665443 454 4566666666664 3444554 33 45555555554
Q ss_pred cccccccCcceEEecCccceecCccccCCCcc-------eEEEccCccccccccccccCCCCCCEeeccCCCCCCccccc
Q 003011 345 EFPQFSGNIKQLYLCGTAIEEVPSSVECLTEL-------AELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEI 417 (857)
Q Consensus 345 ~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~ 417 (857)
.++.+|. +.. +| +.|++++|.+. .+|..+..+++|+.|+|++|++.+..|..
T Consensus 191 -----------------~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 191 -----------------LLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -----------------CCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -----------------CCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 4444443 222 33 55555554333 34444444555555555555555444444
Q ss_pred c
Q 003011 418 T 418 (857)
Q Consensus 418 l 418 (857)
+
T Consensus 250 l 250 (571)
T 3cvr_A 250 L 250 (571)
T ss_dssp H
T ss_pred H
Confidence 3
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=4.1e-16 Score=180.92 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=149.7
Q ss_pred cEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCCCCCCC
Q 003011 159 SIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSNFSPEN 238 (857)
Q Consensus 159 ~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~ 238 (857)
.++.+.+..+.+. .++... .++|+.|++++|.++ .+| ..+++|++|++++|.++.+|. +. .+
T Consensus 60 ~L~~L~Ls~n~L~--~lp~~l---~~~L~~L~Ls~N~l~-------~ip----~~l~~L~~L~Ls~N~l~~ip~-l~-~~ 121 (571)
T 3cvr_A 60 QFSELQLNRLNLS--SLPDNL---PPQITVLEITQNALI-------SLP----ELPASLEYLDACDNRLSTLPE-LP-AS 121 (571)
T ss_dssp TCSEEECCSSCCS--CCCSCC---CTTCSEEECCSSCCS-------CCC----CCCTTCCEEECCSSCCSCCCC-CC-TT
T ss_pred CccEEEeCCCCCC--ccCHhH---cCCCCEEECcCCCCc-------ccc----cccCCCCEEEccCCCCCCcch-hh-cC
Confidence 4555555544443 344433 378999999999842 455 223699999999999999999 62 29
Q ss_pred ccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCC
Q 003011 239 LIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCE 318 (857)
Q Consensus 239 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~ 318 (857)
|++|+|++|.++.+|. .+++|++|+|++|.+. .+|. .+++|++|+|++|...+ +|. +. ++|+.|+|++|
T Consensus 122 L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N- 190 (571)
T 3cvr_A 122 LKHLDVDNNQLTMLPE---LPALLEYINADNNQLT-MLPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN- 190 (571)
T ss_dssp CCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS-
T ss_pred CCEEECCCCcCCCCCC---cCccccEEeCCCCccC-cCCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC-
Confidence 9999999999999988 6899999999999854 4776 67899999999987665 777 66 99999999985
Q ss_pred CCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCC
Q 003011 319 SLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLK 398 (857)
Q Consensus 319 ~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 398 (857)
.++.+|. +.- +| ......|+.|++++|.++.+|..+..+++|+.|+|++|++.+.+|..+..++
T Consensus 191 ~L~~lp~-~~~-~L--------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 191 LLESLPA-VPV-RN--------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CCSSCCC-CC-----------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CCCchhh-HHH-hh--------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5667776 311 22 0111235788888889999999998999999999999999998888776544
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=5e-18 Score=187.73 Aligned_cols=232 Identities=11% Similarity=0.094 Sum_probs=120.2
Q ss_pred CccEEEcCCCCCcccc-----cCcCCCC-CccEEEccCCCCCccCC-CCCCC-----CccceeeccCCccCCccCCccc-
Q 003011 238 NLIELNLPYSKVEQMW-----EGKKESF-KLKWIDLHHCQYLIRFP-DPLET-----PNLERICLSDCIDLPCIPSSIE- 304 (857)
Q Consensus 238 ~L~~L~Ls~n~l~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~lp-~l~~l-----~~L~~L~L~~~~~~~~~p~~i~- 304 (857)
+|++|+|++|.++..+ ..+..++ +|++|+|++|.+....+ .+..+ ++|++|+|++|......+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 3555555555555443 3344444 55555555554332222 22222 5556666665554443333222
Q ss_pred ---CC-CCCcEEeccCCCCCcccCCC-C-----C-CCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCC
Q 003011 305 ---NF-NNLSILCLQGCESLRRFPSN-I-----H-FRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECL 373 (857)
Q Consensus 305 ---~l-~~L~~L~L~~c~~l~~lp~~-~-----~-l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l 373 (857)
.+ ++|++|++++|. ++..+.. + . .++|++|++++|..-.. ....++..+..+
T Consensus 103 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------------~~~~l~~~l~~~ 165 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIK----------------SSDELIQILAAI 165 (362)
T ss_dssp HHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGS----------------CHHHHHHHHHTS
T ss_pred HHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHH----------------HHHHHHHHHhcC
Confidence 23 566666666643 2222210 0 1 13455555554421110 111233334444
Q ss_pred C-cceEEEccCcccccccccc----ccCC-CCCCEeeccCCCCCC----ccccccCC-CCCCCEEeccCCccccCCCCcc
Q 003011 374 T-ELAELYMRQCTRLKSISSR----ICKL-KSLHLLSLDDCCRLE----RFPEITET-MECLEYFSLASTTIQEQPSSNE 442 (857)
Q Consensus 374 ~-~L~~L~L~~~~~l~~lp~~----l~~l-~~L~~L~Ls~~~~~~----~~~~~l~~-l~~L~~L~L~~n~i~~lp~~~~ 442 (857)
+ +|++|++++|......+.. +..+ ++|+.|+|++|.+.. .++..+.. .++|+.|++++|.++..+....
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 3 6666666666555444332 3334 477777777776554 23444444 3477777777777765433110
Q ss_pred cccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc--------CCCcCCCCCCCCeeeCCCCcce
Q 003011 443 DRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE--------IPKDIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 443 ~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~Ls~n~l~ 505 (857)
. ..+..+++|+.|+|++|.+.. ++..+..+++|+.|++++|.+.
T Consensus 246 ~-------------------~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 246 K-------------------LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp H-------------------HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred H-------------------HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 0 003456788888888887333 4456778888999999999876
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=1e-14 Score=147.60 Aligned_cols=153 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred CcceEEecCccceecCcc-ccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 352 NIKQLYLCGTAIEEVPSS-VECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
++++|++++|.++.++.. +..+++|++|++++|......+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 455555555555555543 4566666666666665554444445566666666666666555444555666666666666
Q ss_pred CCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCc-CCCCCCCCeeeCCCCcceeccc
Q 003011 431 STTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKD-IGCLSSLRTLDLRGNNFVSLPA 509 (857)
Q Consensus 431 ~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~ 509 (857)
+|.++.++... +..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus 109 ~N~l~~~~~~~-----------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 109 TNQLQSLPDGV-----------------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp SSCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred CCcCcccCHhH-----------------------hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence 66666554432 23566666666666666665543 566666666666666543
Q ss_pred cccCCCCCcEEecccccccccCCC
Q 003011 510 SIKQFTQMEELILSNCNLLQSLPE 533 (857)
Q Consensus 510 ~l~~l~~L~~L~L~~c~~l~~lp~ 533 (857)
..+++|+.|+++.|...+.+|.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBC
T ss_pred --cCCCCHHHHHHHHHhCCceeec
Confidence 2345666666666666666664
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=8.1e-15 Score=150.78 Aligned_cols=153 Identities=19% Similarity=0.205 Sum_probs=129.0
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
..+.++.+++.+..+|..+. ++|+.|++++|.+.+..|..+..+++|+.|+|++|.+....+..+..+++|+.|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34567788888888887654 8899999999988887788888999999999999988666667788999999999999
Q ss_pred CccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccc-c
Q 003011 432 TTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPA-S 510 (857)
Q Consensus 432 n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~ 510 (857)
|.++.++... +..+++|+.|+|++|++..+|..+..+++|+.|+|++|.|+.+|. .
T Consensus 98 N~l~~l~~~~-----------------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 98 NQLTVLPSAV-----------------------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp SCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CcCCccChhH-----------------------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 9998877654 346889999999999999999999999999999999999998874 4
Q ss_pred ccCCCCCcEEecccccccc
Q 003011 511 IKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 511 l~~l~~L~~L~L~~c~~l~ 529 (857)
+..+++|+.|+|++|+...
T Consensus 155 ~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECTTSCBCT
T ss_pred HhCCCCCCEEEeeCCCccC
Confidence 7889999999999998543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=8.6e-15 Score=149.59 Aligned_cols=149 Identities=20% Similarity=0.262 Sum_probs=122.1
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCc
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTT 433 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~ 433 (857)
+.++++++.++++|..+. ++|+.|++++|.+....+..+..+++|+.|+|++|.+....|..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 466777777888877654 678888888887766666678888888899998888888778888889999999999998
Q ss_pred cccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccC-CCcCCCCCCCCeeeCCCCcceeccc-cc
Q 003011 434 IQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEI-PKDIGCLSSLRTLDLRGNNFVSLPA-SI 511 (857)
Q Consensus 434 i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~-~l 511 (857)
++.+|... +.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.++. .+
T Consensus 92 l~~l~~~~-----------------------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 92 ITELPKSL-----------------------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCTTT-----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCccCHhH-----------------------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 88877654 34688899999999999885 5678889999999999999887775 47
Q ss_pred cCCCCCcEEecccccc
Q 003011 512 KQFTQMEELILSNCNL 527 (857)
Q Consensus 512 ~~l~~L~~L~L~~c~~ 527 (857)
..+++|+.|+|++|+.
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 8889999999999875
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.59 E-value=1.5e-15 Score=195.00 Aligned_cols=128 Identities=23% Similarity=0.307 Sum_probs=114.8
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHHHhhcCC-----------hhHHHHHHHhHhccCHHHHHHhhhh
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHNLKRISD-----------RDVYEVLKISYDELNWEEKNIFLDI 70 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~L~~~~~-----------~~i~~~Lk~SYd~L~~~~K~cFl~~ 70 (857)
+++++|+++|+|+||||+++|+.|+.+. .+|+..++++..... +.+..+|++||+.||+++|.||+||
T Consensus 308 ~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l 386 (1249)
T 3sfz_A 308 AEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDL 386 (1249)
T ss_dssp THHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 5789999999999999999999999876 579999998865431 3599999999999999999999999
Q ss_pred hcCCCCC--CHHHHHHHhcCCCc-hHHHHHHhhcccceeeecCCe---EeccHHHHHHHHHHhhhc
Q 003011 71 ACFFKGE--DKDYVTRIQDDPDF-VRYVLNVLVNKSLITISSYNK---LEMHDLLEEMGREIVRCE 130 (857)
Q Consensus 71 a~Fp~~~--~~~~l~~~~~~~g~-~~~~l~~Li~rsLi~~~~~~~---~~MHDLl~dl~~~i~~~e 130 (857)
|+||+++ +++.++.+|.+++. ++.++++|+++|||+...++. |+|||++|+++++.+.+|
T Consensus 387 ~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 387 SILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999997 78899999998877 999999999999999886554 999999999999987765
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.4e-14 Score=146.65 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=143.1
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCc
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTT 433 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~ 433 (857)
+.++.+++.++++|..+ .++|++|++++|......+..+..+++|+.|++++|.+....+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 46777888888888765 5699999999998876666678899999999999998887767778999999999999999
Q ss_pred cccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCc-CCCCCCCCeeeCCCCcceecccc-c
Q 003011 434 IQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKD-IGCLSSLRTLDLRGNNFVSLPAS-I 511 (857)
Q Consensus 434 i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~-l 511 (857)
++.+|... +.++++|++|++++|.++.++.. +..+++|+.|++++|.++.+|.. +
T Consensus 88 l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 88 LQSLPNGV-----------------------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCCCCTTT-----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCccCHhH-----------------------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 98877643 35789999999999999997754 78999999999999999988865 7
Q ss_pred cCCCCCcEEecccccccccCCCCCCCcceeecccccCCCcccC
Q 003011 512 KQFTQMEELILSNCNLLQSLPELPPSLILLEARNCKQLQSLPE 554 (857)
Q Consensus 512 ~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C~~L~~l~~ 554 (857)
..+++|+.|++++|+..... ++|+.|++..+..-..+|.
T Consensus 145 ~~l~~L~~L~l~~N~~~~~~----~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTCTTCCEEECCSCCBCCCT----TTTHHHHHHHHHCTTTBBC
T ss_pred ccCCCccEEEecCCCeecCC----CCHHHHHHHHHhCCceeec
Confidence 88999999999999866543 4577777777655555554
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1.1e-14 Score=155.52 Aligned_cols=172 Identities=16% Similarity=0.172 Sum_probs=99.5
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCc
Q 003011 215 DELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCI 294 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~ 294 (857)
++|++|++++|.++.+|..-.+++|++|+|++|.++.++. +..+++|++|+|++|.+ ..+|.+..+++|++|++++|.
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc
Confidence 3566666666666666543366667777777776666655 66666666776666653 334455555566666665554
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCC
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLT 374 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~ 374 (857)
... + +.+..+++|+.|++++| .++.+ ..+..++
T Consensus 124 i~~-~-~~l~~l~~L~~L~l~~n--------------------------------------------~l~~~-~~l~~l~ 156 (291)
T 1h6t_A 124 ISD-I-NGLVHLPQLESLYLGNN--------------------------------------------KITDI-TVLSRLT 156 (291)
T ss_dssp CCC-C-GGGGGCTTCCEEECCSS--------------------------------------------CCCCC-GGGGGCT
T ss_pred CCC-C-hhhcCCCCCCEEEccCC--------------------------------------------cCCcc-hhhccCC
Confidence 332 1 23444555555555443 22222 2344555
Q ss_pred cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC
Q 003011 375 ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS 439 (857)
Q Consensus 375 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~ 439 (857)
+|+.|++++|......+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.++..|.
T Consensus 157 ~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 157 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCcc
Confidence 56666666554443332 5666667777777665544 33 36777788888888887776544
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=3.9e-18 Score=198.92 Aligned_cols=214 Identities=13% Similarity=0.192 Sum_probs=128.7
Q ss_pred CCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEe-
Q 003011 235 SPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILC- 313 (857)
Q Consensus 235 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~- 313 (857)
..++|+.|+|++|.++.+|..++++++|+.|++++|..+..+|. .+..+...+..|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 46777788888888888888888788888877765532221110 0111223445667777777787777
Q ss_pred ccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCcccccccccc
Q 003011 314 LQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSR 393 (857)
Q Consensus 314 L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~ 393 (857)
++.+ .+ .+|+.+.+.+|.+..+|.. .|+.|++++|.+.+ +|.
T Consensus 417 l~~n-~~------------------------------~~L~~l~l~~n~i~~l~~~-----~L~~L~Ls~n~l~~-lp~- 458 (567)
T 1dce_A 417 MRAA-YL------------------------------DDLRSKFLLENSVLKMEYA-----DVRVLHLAHKDLTV-LCH- 458 (567)
T ss_dssp GGHH-HH------------------------------HHHHHHHHHHHHHHHHHHT-----TCSEEECTTSCCSS-CCC-
T ss_pred hhhc-cc------------------------------chhhhhhhhcccccccCcc-----CceEEEecCCCCCC-CcC-
Confidence 4331 11 1233334444445444331 35566666664433 454
Q ss_pred ccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcE
Q 003011 394 ICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTG 473 (857)
Q Consensus 394 l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~ 473 (857)
++.+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.++.+| . ++++++|+.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~------------------------l~~l~~L~~ 512 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-G------------------------VANLPRLQE 512 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-G------------------------GTTCSSCCE
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-c------------------------cCCCCCCcE
Confidence 666666666666666555 55666666666667777666666655 1 235667777
Q ss_pred EEeeCCCCccC--CCcCCCCCCCCeeeCCCCcceeccccc----cCCCCCcEEec
Q 003011 474 LNLSFRNITEI--PKDIGCLSSLRTLDLRGNNFVSLPASI----KQFTQMEELIL 522 (857)
Q Consensus 474 L~Ls~n~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L 522 (857)
|+|++|.++++ |..++.+++|+.|+|++|.++.+|..+ ..+++|+.|++
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777777775 667777777777777777777665433 23666766653
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.4e-14 Score=154.69 Aligned_cols=169 Identities=21% Similarity=0.277 Sum_probs=127.7
Q ss_pred CCCCCcEEEcCCCCCCCccccc--ccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeec
Q 003011 328 HFRSPITLDFSDCLNLTEFPQF--SGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSL 405 (857)
Q Consensus 328 ~l~~L~~L~Ls~~~~l~~~p~~--~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 405 (857)
.+++|+.|++++|. +..++.. ..+|+.|++++|.++.++. +..+++|+.|++++|.... ++. +..+++|+.|++
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEEC
Confidence 56778888888874 4444432 3477788888888877766 7777888888888776544 333 777788888888
Q ss_pred cCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC
Q 003011 406 DDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP 485 (857)
Q Consensus 406 s~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp 485 (857)
++|.+... ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~~~-------------------------l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDITV-------------------------LSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCSEEECCSSCCCCCG
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcchh-------------------------hccCCCCCEEEccCCccccch
Confidence 88766553 456777788888888877766521 456889999999999999876
Q ss_pred CcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEecccccccc
Q 003011 486 KDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 486 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~ 529 (857)
. +..+++|+.|++++|.++.+| .+..+++|+.|++++|+...
T Consensus 173 ~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCcccC
Confidence 6 888999999999999999887 48889999999999987654
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=1.3e-14 Score=145.63 Aligned_cols=148 Identities=14% Similarity=0.255 Sum_probs=116.8
Q ss_pred cCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEecc
Q 003011 351 GNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLA 430 (857)
Q Consensus 351 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~ 430 (857)
.+|+.|++++|.+..+| .+..+++|++|++++|. ...++ .+..+++|+.|++++|.+....+..++.+++|+.|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 46778888888888887 68888889999998883 33333 57888889999998888887777888888888888888
Q ss_pred CCcccc-CCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCC-CccCCCcCCCCCCCCeeeCCCCcceecc
Q 003011 431 STTIQE-QPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRN-ITEIPKDIGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 431 ~n~i~~-lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 508 (857)
+|.++. .|.. +..+++|++|++++|. +.++| .+..+++|+.|++++|.++.++
T Consensus 121 ~n~i~~~~~~~------------------------l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 121 HSAHDDSILTK------------------------INTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp SSBCBGGGHHH------------------------HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred CCccCcHhHHH------------------------HhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 888774 2221 3467888899999887 77776 6788889999999999888887
Q ss_pred ccccCCCCCcEEecccccc
Q 003011 509 ASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 509 ~~l~~l~~L~~L~L~~c~~ 527 (857)
.+..+++|+.|++++|+.
T Consensus 176 -~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 176 -GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp -TGGGCSSCCEEEECBC--
T ss_pred -HhccCCCCCEEEeeCccc
Confidence 788889999999998874
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=3.2e-14 Score=145.32 Aligned_cols=149 Identities=19% Similarity=0.187 Sum_probs=92.2
Q ss_pred eEEecCccceecCccccCCCcceEEEccCcccccccc-ccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCc
Q 003011 355 QLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSIS-SRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTT 433 (857)
Q Consensus 355 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~ 433 (857)
.++++++.++++|..+. +.++.|++++|.+....+ ..+..+++|+.|+|++|.+....+..+..+++|+.|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 55555555655555442 334566666665544433 235566666666666666655555566666666666666666
Q ss_pred cccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccC-CCcCCCCCCCCeeeCCCCcceec-cccc
Q 003011 434 IQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEI-PKDIGCLSSLRTLDLRGNNFVSL-PASI 511 (857)
Q Consensus 434 i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~~l 511 (857)
++.++... +.++++|++|+|++|.++.+ |..+..+++|+.|+|++|.++.+ |..+
T Consensus 93 l~~~~~~~-----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 93 LENVQHKM-----------------------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CCCCCGGG-----------------------GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred cCccCHhH-----------------------hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 66555432 23566677777777777664 45667777777777777777755 5566
Q ss_pred cCCCCCcEEeccccccc
Q 003011 512 KQFTQMEELILSNCNLL 528 (857)
Q Consensus 512 ~~l~~L~~L~L~~c~~l 528 (857)
..+++|+.|+|++|+..
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 77777777777777643
No 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.55 E-value=4.8e-15 Score=175.99 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=96.0
Q ss_pred hcCCChHHHHHHHhhhcCC--CHHHHHHHHHHHhhcCChhHHHHHHHhHhccCHHH-HHHhhhhhcCCCCC--CHHHHHH
Q 003011 10 YAKGNPLALKVLGSFFYGR--RKVDWENALHNLKRISDRDVYEVLKISYDELNWEE-KNIFLDIACFFKGE--DKDYVTR 84 (857)
Q Consensus 10 ~c~GlPLAlkvlG~~L~~k--~~~~W~~~l~~L~~~~~~~i~~~Lk~SYd~L~~~~-K~cFl~~a~Fp~~~--~~~~l~~ 84 (857)
-|+|+||||+++|+.|+++ +.++|+.+ ....|..+|++||+.||+++ |+||+|||+||+++ +.+.++.
T Consensus 322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~ 394 (1221)
T 1vt4_I 322 VLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394 (1221)
T ss_dssp HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHH
T ss_pred HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 3999999999999999987 77899864 35779999999999999999 99999999999987 5788999
Q ss_pred HhcCCCc--hHHHHHHhhcccceeeec-CCeEeccHHHHHHH
Q 003011 85 IQDDPDF--VRYVLNVLVNKSLITISS-YNKLEMHDLLEEMG 123 (857)
Q Consensus 85 ~~~~~g~--~~~~l~~Li~rsLi~~~~-~~~~~MHDLl~dl~ 123 (857)
+|+++|. +..++++|++||||+... .++|+||||+++++
T Consensus 395 LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999975 889999999999999863 56899999999865
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=3.1e-14 Score=166.96 Aligned_cols=172 Identities=16% Similarity=0.175 Sum_probs=106.5
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCc
Q 003011 215 DELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCI 294 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~ 294 (857)
.+|+.|++++|.+..+|....+++|+.|+|++|.+..++. +..+++|+.|+|++|. +..+|.+..+++|++|+|++|.
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC
Confidence 4677777777777777643367777777777777776655 6677777777777776 3345566666666666666655
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCC
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLT 374 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~ 374 (857)
... + +.+..+++|+.|+|++| .+..+ ..+..++
T Consensus 121 l~~-l-~~l~~l~~L~~L~Ls~N--------------------------------------------~l~~l-~~l~~l~ 153 (605)
T 1m9s_A 121 ISD-I-NGLVHLPQLESLYLGNN--------------------------------------------KITDI-TVLSRLT 153 (605)
T ss_dssp CCC-C-GGGGGCTTCSEEECCSS--------------------------------------------CCCCC-GGGGSCT
T ss_pred CCC-C-ccccCCCccCEEECCCC--------------------------------------------ccCCc-hhhcccC
Confidence 433 2 23555555555555543 22222 2345556
Q ss_pred cceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC
Q 003011 375 ELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS 439 (857)
Q Consensus 375 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~ 439 (857)
+|+.|+|++|.+....| +..+++|+.|+|++|.+... ..+..+++|+.|+|++|.+...|.
T Consensus 154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 66666666665544444 66677777777777755542 346777778888888777776554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=3.2e-14 Score=157.03 Aligned_cols=153 Identities=21% Similarity=0.236 Sum_probs=98.9
Q ss_pred CcceEEecCccceecCcc-cc-CCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEec
Q 003011 352 NIKQLYLCGTAIEEVPSS-VE-CLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSL 429 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~-l~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L 429 (857)
.++.|+|++|.++.++.. +. .+++|+.|+|++|.+....+..|..+++|+.|+|++|.+....+..|..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 456666666777766554 33 6777777777777666555566777777777777777666555556677777777777
Q ss_pred cCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcC----CCCCCCCeeeCCCCcce
Q 003011 430 ASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDI----GCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 430 ~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~Ls~n~l~ 505 (857)
++|.|+.++... +.++++|+.|+|++|.++.+|..+ ..+++|+.|+|++|.|+
T Consensus 120 ~~N~i~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 120 YNNHIVVVDRNA-----------------------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp CSSCCCEECTTT-----------------------TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCCcccEECHHH-----------------------hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777776554322 345677777777777777766543 45777777777777777
Q ss_pred ecc-ccccCCCC--CcEEecccccc
Q 003011 506 SLP-ASIKQFTQ--MEELILSNCNL 527 (857)
Q Consensus 506 ~lp-~~l~~l~~--L~~L~L~~c~~ 527 (857)
.+| ..+..++. |+.|+|++|+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 666 33555555 36667766653
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=2.8e-14 Score=143.02 Aligned_cols=109 Identities=10% Similarity=0.048 Sum_probs=67.7
Q ss_pred CCeeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCC
Q 003011 215 DELRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDC 293 (857)
Q Consensus 215 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~ 293 (857)
++|++|++++|.+..+|....+++|++|++++|.++.++ .+..+++|++|++++|.+....| .+..+++|++|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 356666666666666663226666666666666665553 55666777777777766544333 5666677777777776
Q ss_pred ccCCccCCcccCCCCCcEEeccCCCCCcccC
Q 003011 294 IDLPCIPSSIENFNNLSILCLQGCESLRRFP 324 (857)
Q Consensus 294 ~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp 324 (857)
......|..++.+++|++|++++|..++.+|
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence 6666566666666777777766654344443
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4.4e-14 Score=165.66 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=133.0
Q ss_pred CCCCCcEEEcCCCCCCCccccc--ccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeec
Q 003011 328 HFRSPITLDFSDCLNLTEFPQF--SGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSL 405 (857)
Q Consensus 328 ~l~~L~~L~Ls~~~~l~~~p~~--~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 405 (857)
.+++|+.|++++|. +..++.+ +.+|+.|+|++|.+..++. +..+++|+.|+|++|.+.. +| .+..+++|+.|+|
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 57778888888774 4444432 3478888888888887776 7788888888888876543 34 5777888888888
Q ss_pred cCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC
Q 003011 406 DDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP 485 (857)
Q Consensus 406 s~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp 485 (857)
++|.+... ..+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.+.+++
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l~~-------------------------l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDITV-------------------------LSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-------------------------GGSCTTCSEEECCSSCCCCCG
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCchh-------------------------hcccCCCCEEECcCCcCCCch
Confidence 88876652 357778888888888887776521 457899999999999999976
Q ss_pred CcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEeccccccccc
Q 003011 486 KDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCNLLQS 530 (857)
Q Consensus 486 ~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~~l~~ 530 (857)
. +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|+....
T Consensus 170 ~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 170 P-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred h-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 6 899999999999999999886 689999999999999987653
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=2e-13 Score=139.37 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=123.0
Q ss_pred EEEcCCCCCCCccccc-ccCcceEEecCccceecCc--cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCC
Q 003011 334 TLDFSDCLNLTEFPQF-SGNIKQLYLCGTAIEEVPS--SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCR 410 (857)
Q Consensus 334 ~L~Ls~~~~l~~~p~~-~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~ 410 (857)
.++++++ .++.+|.. ...++.|++++|.++.++. .+..+++|+.|++++|.+....+..|..+++|+.|+|++|.+
T Consensus 15 ~l~~s~n-~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQ-KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCC-CcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4444443 23344433 2356788888888988843 378999999999999988877777899999999999999999
Q ss_pred CCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccC-CCcCC
Q 003011 411 LERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEI-PKDIG 489 (857)
Q Consensus 411 ~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~ 489 (857)
....+..+..+++|++|++++|.++.++... +.++++|+.|+|++|.++++ |..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~ 150 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDS-----------------------FIGLSSVRLLSLYDNQITTVAPGAFD 150 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-----------------------STTCTTCSEEECTTSCCCCBCTTTTT
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhH-----------------------cCCCccCCEEECCCCcCCEECHHHhc
Confidence 8888888999999999999999999875533 45789999999999999996 78899
Q ss_pred CCCCCCeeeCCCCcce
Q 003011 490 CLSSLRTLDLRGNNFV 505 (857)
Q Consensus 490 ~l~~L~~L~Ls~n~l~ 505 (857)
.+++|+.|+|++|.+.
T Consensus 151 ~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 151 TLHSLSTLNLLANPFN 166 (220)
T ss_dssp TCTTCCEEECCSCCEE
T ss_pred CCCCCCEEEecCcCCc
Confidence 9999999999999987
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=2.7e-13 Score=138.46 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=120.0
Q ss_pred CCccccc-ccCcceEEecCccceecCc-cccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCC
Q 003011 343 LTEFPQF-SGNIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITET 420 (857)
Q Consensus 343 l~~~p~~-~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~ 420 (857)
+..+|.. ..+++.|++++|.++.+|. .+..+++|+.|+|++|.+....|..|..+++|+.|+|++|.+....+..+..
T Consensus 23 l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 23 LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 3444432 3477888888888988876 5889999999999999988888899999999999999999988777777899
Q ss_pred CCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeC
Q 003011 421 MECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDL 499 (857)
Q Consensus 421 l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 499 (857)
+++|+.|++++|.++.++... +.++++|+.|+|++|.++.++. .+..+++|+.|+|
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDA-----------------------FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTT-----------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCCEEECCCCCCCEeCHHH-----------------------cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 999999999999999876543 4578999999999999999764 5889999999999
Q ss_pred CCCcce
Q 003011 500 RGNNFV 505 (857)
Q Consensus 500 s~n~l~ 505 (857)
++|++.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 999986
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=8e-14 Score=153.80 Aligned_cols=153 Identities=21% Similarity=0.208 Sum_probs=131.9
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCcccccccccccc-CCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRIC-KLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
+.++++++.++.+|..+. +.++.|+|++|.+....+..+. .+++|+.|+|++|.+....+..|..+++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 578888889999998654 5689999999988777677777 8999999999999998888888999999999999999
Q ss_pred ccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccC-CCcCCCCCCCCeeeCCCCcceeccccc
Q 003011 433 TIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEI-PKDIGCLSSLRTLDLRGNNFVSLPASI 511 (857)
Q Consensus 433 ~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~l 511 (857)
.++.++... +.++++|+.|+|++|.+..+ |..+..+++|+.|+|++|.|+.+|..+
T Consensus 99 ~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 99 HLHTLDEFL-----------------------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CCCEECTTT-----------------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred cCCcCCHHH-----------------------hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 999887654 45789999999999999995 678999999999999999999999775
Q ss_pred ----cCCCCCcEEecccccccccCC
Q 003011 512 ----KQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 512 ----~~l~~L~~L~L~~c~~l~~lp 532 (857)
..+++|+.|+|++|++. .+|
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~-~l~ 179 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLK-KLP 179 (361)
T ss_dssp TC----CTTCCEEECCSSCCC-CCC
T ss_pred hcCcccCCcCCEEECCCCCCC-ccC
Confidence 57999999999999755 344
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=2.6e-14 Score=150.28 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=92.7
Q ss_pred cceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 353 IKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 353 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
+..++++++.+++++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 334445555555544 3455555555555555332 333 35555566666665555444332 555566666666666
Q ss_pred ccccCCCCcccccCcCCcceeeccccCCc-CCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccccc
Q 003011 433 TIQEQPSSNEDRILPSSIANWSYGCRGLI-LPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPASI 511 (857)
Q Consensus 433 ~i~~lp~~~~~~~lp~~L~~L~l~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l 511 (857)
.++.+|.... +.|+.|+++.+.+. ++.+..+++|+.|++++|++++++ .++.+++|+.|++++|.++.+ ..+
T Consensus 96 ~l~~l~~~~~-----~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RLKNLNGIPS-----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSCCTTCCC-----SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred ccCCcCcccc-----CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 5555543211 33333333222221 122556777777777777777765 566677777777777777766 466
Q ss_pred cCCCCCcEEecccccccc
Q 003011 512 KQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 512 ~~l~~L~~L~L~~c~~l~ 529 (857)
..+++|+.|++++|+...
T Consensus 169 ~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEeCCCCcccC
Confidence 677777777777776543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=4.5e-14 Score=148.43 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=101.5
Q ss_pred CCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCcccCCCCCcEEecc
Q 003011 236 PENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQ 315 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~ 315 (857)
+.+++.++++.+.++.++ .+..+++|++|++++|. +..+|.+..+++|++|+|++|.... ++. ++.+++|+.|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 334444455555555444 34455555555555554 2334445555555555555544333 222 5666666666666
Q ss_pred CCCCCcccCCCCCCCCCcEEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCcccccccccccc
Q 003011 316 GCESLRRFPSNIHFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRIC 395 (857)
Q Consensus 316 ~c~~l~~lp~~~~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~ 395 (857)
+| .++.+|.... + +|+.|++++|.++.++ .+..+++|+.|++++|...+ ++ .+.
T Consensus 94 ~N-~l~~l~~~~~-~---------------------~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~ 147 (263)
T 1xeu_A 94 RN-RLKNLNGIPS-A---------------------CLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLG 147 (263)
T ss_dssp SS-CCSCCTTCCC-S---------------------SCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGG
T ss_pred CC-ccCCcCcccc-C---------------------cccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHc
Confidence 53 3333333112 3 3444444445555553 46677788888888776544 33 477
Q ss_pred CCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCC
Q 003011 396 KLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPS 439 (857)
Q Consensus 396 ~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~ 439 (857)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+...|.
T Consensus 148 ~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp GCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 788888888888877665 567888889999999888876654
No 120
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=165.09 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=122.4
Q ss_pred chHHHHHHhcCCChHHHHHHHhhhcCCCHHHHHHHHHHHhhcC-----------ChhHHHHHHHhHhccCHHHHHHhhhh
Q 003011 2 VLSTRVVDYAKGNPLALKVLGSFFYGRRKVDWENALHNLKRIS-----------DRDVYEVLKISYDELNWEEKNIFLDI 70 (857)
Q Consensus 2 ~l~~~iv~~c~GlPLAlkvlG~~L~~k~~~~W~~~l~~L~~~~-----------~~~i~~~Lk~SYd~L~~~~K~cFl~~ 70 (857)
+.+++|+++|+|+||||+++|+.|+++. .+|+.+++.+.... ...|..++..||+.||+++|.||+++
T Consensus 308 ~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~l 386 (591)
T 1z6t_A 308 EQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDL 386 (591)
T ss_dssp THHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 5688999999999999999999998763 47999999887543 24699999999999999999999999
Q ss_pred hcCCCCC--CHHHHHHHhcCCCc-hHHHHHHhhcccceeeecC---CeEeccHHHHHHHHHHhhhcc-------------
Q 003011 71 ACFFKGE--DKDYVTRIQDDPDF-VRYVLNVLVNKSLITISSY---NKLEMHDLLEEMGREIVRCES------------- 131 (857)
Q Consensus 71 a~Fp~~~--~~~~l~~~~~~~g~-~~~~l~~Li~rsLi~~~~~---~~~~MHDLl~dl~~~i~~~e~------------- 131 (857)
|+||+|+ +.+.+..+|.+++. +..++++|+++|||+...+ ..|+|||++|+++++....+.
T Consensus 387 a~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~ 466 (591)
T 1z6t_A 387 SILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQR 466 (591)
T ss_dssp GGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTT
T ss_pred cccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 9999986 57789999987755 8899999999999987643 269999999999987722110
Q ss_pred ------CCCCCcceeeccccchhhhcccCc
Q 003011 132 ------VKEPGKRSRLWHHEDIYHVLKKNK 155 (857)
Q Consensus 132 ------~~~~~~~~rl~~~~di~~vl~~~~ 155 (857)
...++.+.++|..+.+++++..+.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~ 496 (591)
T 1z6t_A 467 YHQPHTLSPDQEDCMYWYNFLAYHMASAKM 496 (591)
T ss_dssp TCCGGGCCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred hcCCCCCCCCCCCEEeehhhHHHHHHhcCC
Confidence 122334556676677777766554
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=7e-13 Score=136.23 Aligned_cols=148 Identities=24% Similarity=0.287 Sum_probs=119.8
Q ss_pred EEEcCCCCCCCcccc-cccCcceEEecCccceec-CccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCC
Q 003011 334 TLDFSDCLNLTEFPQ-FSGNIKQLYLCGTAIEEV-PSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRL 411 (857)
Q Consensus 334 ~L~Ls~~~~l~~~p~-~~~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~ 411 (857)
.++.+++ .+..+|. ...+|+.|++++|.+..+ |..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.+.
T Consensus 23 ~v~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 23 TVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp EEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeEccCC-CcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 3444432 3344443 234777888888888877 556889999999999999875555566789999999999999888
Q ss_pred CccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC-CcCCC
Q 003011 412 ERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP-KDIGC 490 (857)
Q Consensus 412 ~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~ 490 (857)
...+..+..+++|+.|++++|.++.+|..+. .+++|+.|+|++|.+..+| ..+..
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~------------------------~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIE------------------------RLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSCCTTGG------------------------GCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred ccChhHhCcchhhCeEeccCCcccccCcccc------------------------cCCCCCEEECCCCcCCccCHHHHhC
Confidence 7777788999999999999999998887653 5789999999999999977 56889
Q ss_pred CCCCCeeeCCCCccee
Q 003011 491 LSSLRTLDLRGNNFVS 506 (857)
Q Consensus 491 l~~L~~L~Ls~n~l~~ 506 (857)
+++|+.|+|++|.+..
T Consensus 158 l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTCCEEECTTSCBCT
T ss_pred CCCCCEEEeeCCCccC
Confidence 9999999999999873
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=3.8e-13 Score=130.99 Aligned_cols=60 Identities=28% Similarity=0.292 Sum_probs=38.9
Q ss_pred CCCCcEEEeeCCCCccCC--CcCCCCCCCCeeeCCCCcceeccc----cccCCCCCcEEecccccc
Q 003011 468 LSSLTGLNLSFRNITEIP--KDIGCLSSLRTLDLRGNNFVSLPA----SIKQFTQMEELILSNCNL 527 (857)
Q Consensus 468 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~c~~ 527 (857)
+++|++|++++|.++++| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|..
T Consensus 94 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 455666666666665544 456666777777777777666665 566677777777777654
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=1.6e-14 Score=168.37 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=53.0
Q ss_pred CCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceec--cccccCCCCCcEEecccccccccCC
Q 003011 465 LPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSL--PASIKQFTQMEELILSNCNLLQSLP 532 (857)
Q Consensus 465 l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~c~~l~~lp 532 (857)
++++++|+.|+|++|.++++| .++.+++|+.|+|++|.|+.+ |..+..+++|+.|+|++|+.....|
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 482 LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred hhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 456788888888888888877 788888888888888888876 7788888888888888887655444
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=5.6e-13 Score=129.76 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=96.9
Q ss_pred cCcceEEecCccce--ecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEe
Q 003011 351 GNIKQLYLCGTAIE--EVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFS 428 (857)
Q Consensus 351 ~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~ 428 (857)
.+++.|++++|.+. .+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.+...+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 46777777777777 6777777777777777777765443 5577777777777777777766676666777777777
Q ss_pred ccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC----cCCCCCCCCeeeCCCCcc
Q 003011 429 LASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK----DIGCLSSLRTLDLRGNNF 504 (857)
Q Consensus 429 L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~n~l 504 (857)
+++|.++.+|... .+..+++|+.|++++|.++++|. .+..+++|+.|++++|.+
T Consensus 102 Ls~N~l~~~~~~~----------------------~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLE----------------------PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGG----------------------GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHH----------------------HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777776654210 13456777777777777777665 677777777777777777
Q ss_pred eecccc
Q 003011 505 VSLPAS 510 (857)
Q Consensus 505 ~~lp~~ 510 (857)
..+|..
T Consensus 160 ~~~~~~ 165 (168)
T 2ell_A 160 QEAPDS 165 (168)
T ss_dssp CBCCSS
T ss_pred hhcccc
Confidence 776644
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=2.4e-13 Score=163.44 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=113.7
Q ss_pred cceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 353 IKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 353 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
+..+++..|.+...|..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|
T Consensus 203 i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred ccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 33445555666666777888999999999998765 67777889999999999999877 78888999999999999999
Q ss_pred ccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcce-eccccc
Q 003011 433 TIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFV-SLPASI 511 (857)
Q Consensus 433 ~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l 511 (857)
.|+.+|..+. ++++|++|+|++|.++.+|..++.+++|+.|+|++|.|+ .+|..+
T Consensus 281 ~l~~lp~~~~------------------------~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 281 RLTSLPAELG------------------------SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CCSSCCSSGG------------------------GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCccChhhc------------------------CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9998877653 578999999999999999999999999999999999988 555555
Q ss_pred cCCC-CCcEEecccccccccCCCCCCCcceeecccc
Q 003011 512 KQFT-QMEELILSNCNLLQSLPELPPSLILLEARNC 546 (857)
Q Consensus 512 ~~l~-~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C 546 (857)
..+. .+..|+|++|.....+| ..|..|++.++
T Consensus 337 ~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~n 369 (727)
T 4b8c_D 337 TEKSVTGLIFYLRDNRPEIPLP---HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCC---CC---------
T ss_pred hhcchhhhHHhhccCcccCcCc---cccceeEeecc
Confidence 4432 22347889988766554 46777777766
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=7.6e-13 Score=126.02 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=68.3
Q ss_pred CcceEEEccCcccc-ccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCcccc-CCCCcccccCcCCcc
Q 003011 374 TELAELYMRQCTRL-KSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQE-QPSSNEDRILPSSIA 451 (857)
Q Consensus 374 ~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~-lp~~~~~~~lp~~L~ 451 (857)
++|+.|++++|... +.+|..+..+++|+.|++++|.+... ..+..+++|+.|++++|.++. +|..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~----------- 83 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL----------- 83 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH-----------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH-----------
Confidence 44455555555443 34444444555555555555544333 344455555555555555544 2221
Q ss_pred eeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC--CcCCCCCCCCeeeCCCCcceeccc----cccCCCCCcEEeccc
Q 003011 452 NWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP--KDIGCLSSLRTLDLRGNNFVSLPA----SIKQFTQMEELILSN 524 (857)
Q Consensus 452 ~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 524 (857)
+.++++|++|++++|.++++| ..++.+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 84 -------------~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 84 -------------AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp -------------HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred -------------hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 112455666666666666543 556667777777777777776654 466677777777653
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=5.5e-12 Score=125.70 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=80.0
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCccccccccc-cccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISS-RICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
+.++++++.++++|..+.. +|++|++++|.+.+..+. .+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777775533 777777777765544443 3667777777777777766666666666666666666666
Q ss_pred ccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCcCCCCCCCCeeeCCCCcce
Q 003011 433 TIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKDIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 433 ~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~ 505 (857)
.++.++... +.++++|++|+|++|++++ .|..+..+++|+.|+|++|.+.
T Consensus 89 ~l~~~~~~~-----------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKM-----------------------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSS-----------------------STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHH-----------------------hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666554432 2345566666666666655 3455555666666666666554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.4e-11 Score=122.92 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=47.9
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCc
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTT 433 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~ 433 (857)
+.++++++.++++|..+. ++|++|++++|.+. .+|..+..+++|+.|+|++|.+....+..|..+++|+.|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456667777777776542 46666666666443 445555566666666666665555444555555555555555555
Q ss_pred cccCCC
Q 003011 434 IQEQPS 439 (857)
Q Consensus 434 i~~lp~ 439 (857)
++.++.
T Consensus 90 l~~i~~ 95 (193)
T 2wfh_A 90 LRCIPP 95 (193)
T ss_dssp CCBCCT
T ss_pred cCEeCH
Confidence 554443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.9e-12 Score=125.83 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=84.5
Q ss_pred ccCCCcceEEEccCccccccccccccCC-CCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcC
Q 003011 370 VECLTELAELYMRQCTRLKSISSRICKL-KSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPS 448 (857)
Q Consensus 370 l~~l~~L~~L~L~~~~~l~~lp~~l~~l-~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~ 448 (857)
+..+++|+.|++++|... .+|. +..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.++.+|....
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~------ 84 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD------ 84 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH------
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh------
Confidence 345566677777766544 3343 3333 3677777777665543 456667777777777777766654331
Q ss_pred CcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC--cCCCCCCCCeeeCCCCcceecccc----ccCCCCCcEEec
Q 003011 449 SIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK--DIGCLSSLRTLDLRGNNFVSLPAS----IKQFTQMEELIL 522 (857)
Q Consensus 449 ~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L 522 (857)
..+++|++|++++|.+.++|. .+..+++|+.|++++|.+..+|.. +..+++|+.|++
T Consensus 85 -----------------~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 85 -----------------QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp -----------------HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred -----------------hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 246677777777777766665 667777777777777777777664 667777777777
Q ss_pred ccccc
Q 003011 523 SNCNL 527 (857)
Q Consensus 523 ~~c~~ 527 (857)
++|..
T Consensus 148 ~~n~~ 152 (176)
T 1a9n_A 148 QKVKL 152 (176)
T ss_dssp EECCH
T ss_pred CcCCH
Confidence 77654
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.30 E-value=1.4e-11 Score=122.68 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=82.1
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccC--cCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 218 RYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEG--KKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 218 r~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~--~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
++++++++.++.+|..+. .+|++|+|++|+++.++.. +..+++|++|+|++|.+....| .+.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 566777777777776552 2677777777777766643 6677777777777777655545 56777777777777776
Q ss_pred cCCccCCcccCCCCCcEEeccCCCCCcccCCCC-CCCCCcEEEcCCCC
Q 003011 295 DLPCIPSSIENFNNLSILCLQGCESLRRFPSNI-HFRSPITLDFSDCL 341 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~ 341 (857)
..+..+..++.+++|++|+|++|......|..+ .+++|+.|++++|.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 666666667777777777777754444445444 56667777666664
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3e-12 Score=121.90 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=107.1
Q ss_pred ccCcceEEecCccce--ecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEE
Q 003011 350 SGNIKQLYLCGTAIE--EVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYF 427 (857)
Q Consensus 350 ~~~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L 427 (857)
..+++.|++++|.+. .+|..+..+++|+.|++++|..... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 357788888888888 7888889999999999999976655 668899999999999999888888888889999999
Q ss_pred eccCCccccCC--CCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC----cCCCCCCCCeeeCCC
Q 003011 428 SLASTTIQEQP--SSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK----DIGCLSSLRTLDLRG 501 (857)
Q Consensus 428 ~L~~n~i~~lp--~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~ 501 (857)
++++|.++.+| .. +..+++|++|++++|.++++|. .+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEP------------------------LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGG------------------------GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHH------------------------HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999988754 22 3468899999999999999776 688899999999864
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=2.4e-12 Score=154.66 Aligned_cols=177 Identities=16% Similarity=0.212 Sum_probs=111.8
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCc----cccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEE
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQC----TRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYF 427 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~----~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L 427 (857)
.++.|+|.++.+...+..+.....|..+.+... ......+..+..+++|+.|+|++|.+. .+|..+..+++|+.|
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRL 252 (727)
T ss_dssp ------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEE
Confidence 455666666666666555444444444433321 122345677889999999999999876 677777799999999
Q ss_pred eccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceec
Q 003011 428 SLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSL 507 (857)
Q Consensus 428 ~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~l 507 (857)
+|++|.|+.+|..+ .++++|+.|+|++|.++.+|..++.+++|+.|+|++|.|+.+
T Consensus 253 ~Ls~N~l~~lp~~~------------------------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 253 YLNGNSLTELPAEI------------------------KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp BCTTSCCSCCCGGG------------------------GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred EeeCCcCcccChhh------------------------hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc
Confidence 99999999887654 358999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcEEecccccccccCCCCCC----CcceeecccccCCCccc
Q 003011 508 PASIKQFTQMEELILSNCNLLQSLPELPP----SLILLEARNCKQLQSLP 553 (857)
Q Consensus 508 p~~l~~l~~L~~L~L~~c~~l~~lp~l~~----sL~~L~i~~C~~L~~l~ 553 (857)
|..+..+++|+.|+|++|++...+|.... .+..|++.++.--..+|
T Consensus 309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 99999999999999999998887775332 12235566654433333
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=6e-12 Score=136.84 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=157.8
Q ss_pred CCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCC-C-C--------CCCccEEEcCCCCCccc
Q 003011 183 MTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSN-F-S--------PENLIELNLPYSKVEQM 252 (857)
Q Consensus 183 l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~--------l~~L~~L~Ls~n~l~~l 252 (857)
+++|+.|+|++|++.. ...+.+ .++ .++.+.+..+ .+|.. | + +.+|+.|+|++ .++.+
T Consensus 48 l~~L~~LdLs~n~i~~-----~~~~~~--~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I 115 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-----YSGKAG--TYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNI 115 (329)
T ss_dssp CTTCCEEEEEEEEECC-----EEESSS--SSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEE
T ss_pred hccCeEEecCcceeEE-----ecCccc--ccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccch
Confidence 6789999998887321 011111 121 2445555544 45443 4 6 88899999988 88888
Q ss_pred cc-CcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCcc----CCccCCcccCCCCCc-EEeccCCCCCccc--
Q 003011 253 WE-GKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCID----LPCIPSSIENFNNLS-ILCLQGCESLRRF-- 323 (857)
Q Consensus 253 ~~-~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~----~~~~p~~i~~l~~L~-~L~L~~c~~l~~l-- 323 (857)
++ .+..+++|+.|++++|.+....+ .|.++.++..+.+..... ...-...+..+..|+ .+.+.....+...
T Consensus 116 ~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~ 195 (329)
T 3sb4_A 116 EDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIM 195 (329)
T ss_dssp CTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHH
T ss_pred hHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHh
Confidence 74 46888889999998887543333 466766677666554211 111123344555555 4444332222111
Q ss_pred CCCCCCCCCcEEEcCCCCCCCcc---cccccCcceEEecCccceecCcc-ccCCCcceEEEccCccccccccccccCCCC
Q 003011 324 PSNIHFRSPITLDFSDCLNLTEF---PQFSGNIKQLYLCGTAIEEVPSS-VECLTELAELYMRQCTRLKSISSRICKLKS 399 (857)
Q Consensus 324 p~~~~l~~L~~L~Ls~~~~l~~~---p~~~~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 399 (857)
...+...++..+.+.+.-....+ .....+|+.|++.+|.++.+|.. +..+++|+.|++.++ ....-+..|.++++
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~ 274 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR 274 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence 01124556666666654221111 12245899999999999999876 788999999999987 33334457899999
Q ss_pred CC-EeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCccc
Q 003011 400 LH-LLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNED 443 (857)
Q Consensus 400 L~-~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~ 443 (857)
|+ .+++.+ .....-+..|.++++|+.|++++|.++.++...+.
T Consensus 275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc
Confidence 99 999988 55555568899999999999999999988876643
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=121.00 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=90.9
Q ss_pred eEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCcccccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCccC
Q 003011 218 RYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQMWEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCIDL 296 (857)
Q Consensus 218 r~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~~~ 296 (857)
++++++++.++.+|..+ ..+|++|+|++|.++.+|..+..+++|++|+|++|.+....+ .|.++++|++|+|++|...
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 46777788888887665 357888888888888888778888888888888887554444 4778888888888888777
Q ss_pred CccCCcccCCCCCcEEeccCCCCCcccCCC-C-CCCCCcEEEcCCCC
Q 003011 297 PCIPSSIENFNNLSILCLQGCESLRRFPSN-I-HFRSPITLDFSDCL 341 (857)
Q Consensus 297 ~~~p~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~Ls~~~ 341 (857)
...|..+..+++|+.|+|++| .++.+|.. + .+++|+.|++++|.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 666677888888888888874 45566654 3 67777777777764
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=3.8e-11 Score=117.78 Aligned_cols=128 Identities=19% Similarity=0.262 Sum_probs=71.5
Q ss_pred cceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 353 IKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 353 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
.+.++++++.+..+|..+ .++|+.|++++|...+..+ ..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~------------------------~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPH------------------------GVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCT------------------------TTTTTCTTCSEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCH------------------------HHhcCcccccEEECCCC
Confidence 345666666666666443 2455555555554433333 33444445555555555
Q ss_pred ccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC-cCCCCCCCCeeeCCCCcceecccc-
Q 003011 433 TIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK-DIGCLSSLRTLDLRGNNFVSLPAS- 510 (857)
Q Consensus 433 ~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~- 510 (857)
.++.+|... +.++++|++|++++|.++++|. .+..+++|+.|++++|.++.+|..
T Consensus 63 ~l~~~~~~~-----------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 63 QIQSLPDGV-----------------------FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp CCCCCCTTT-----------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cceEeChhH-----------------------ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence 554444322 2345566666666666666443 345666777777777776666654
Q ss_pred ccCCCCCcEEecccccccc
Q 003011 511 IKQFTQMEELILSNCNLLQ 529 (857)
Q Consensus 511 l~~l~~L~~L~L~~c~~l~ 529 (857)
+..+++|+.|++++|+...
T Consensus 120 ~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred hcCCcccCEEEecCCCeec
Confidence 3566777777777776543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=3.2e-11 Score=131.09 Aligned_cols=283 Identities=10% Similarity=-0.026 Sum_probs=156.6
Q ss_pred CCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCC--CCCCCCCCCCccEEEcCCCCCcccc-cCcCC-
Q 003011 183 MTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLK--TLPSNFSPENLIELNLPYSKVEQMW-EGKKE- 258 (857)
Q Consensus 183 l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~--~lp~~~~l~~L~~L~Ls~n~l~~l~-~~~~~- 258 (857)
+.+|+.|.+.++- ...-...+.....+|++|+|++|.+. ..+.. .+..++.+.+..+. +| ..+..
T Consensus 24 ~~~l~~L~l~g~i-------~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~~---I~~~aF~~~ 92 (329)
T 3sb4_A 24 ANSITHLTLTGKL-------NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMANF---VPAYAFSNV 92 (329)
T ss_dssp HHHCSEEEEEEEE-------CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTTE---ECTTTTEEE
T ss_pred hCceeEEEEeccc-------cHHHHHHHHHhhccCeEEecCcceeEEecCccc-cccccccccccccc---cCHHHhccc
Confidence 3467777776542 00011122231257888888888877 22221 12224555555553 33 23455
Q ss_pred -------CCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCC---CCcccCCC
Q 003011 259 -------SFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCE---SLRRFPSN 326 (857)
Q Consensus 259 -------l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~---~l~~lp~~ 326 (857)
+++|+.|+|.+ . +..++ .|.++++|+.|++.+|......+.+|..+.++..+.+.... ....+...
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred ccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccc
Confidence 78888888887 3 44555 47788888888888776655555666666666666553311 11111111
Q ss_pred C--CCCCCc-EEEcCCCCCCCcccccccCcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEe
Q 003011 327 I--HFRSPI-TLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLL 403 (857)
Q Consensus 327 ~--~l~~L~-~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L 403 (857)
. .+..|+ .+.+.....+ +.. +...-....++..+.+.++-...........+++|+.|
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l---~~~----------------~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKL---EDE----------------IMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp CEEESCCCEEEEEECTTCCH---HHH----------------HHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred ccccccccceeEEecCCCcH---HHH----------------HhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 1 233333 2333221111 100 00001123344444444431111111111135677777
Q ss_pred eccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCc-EEEeeCCCCc
Q 003011 404 SLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLT-GLNLSFRNIT 482 (857)
Q Consensus 404 ~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~-~L~Ls~n~l~ 482 (857)
+|++|.....-+..|.++.+|+.|++.+| ++.++... |.++++|+ .+++.+ +++
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a-----------------------F~~~~~L~~~l~l~~-~l~ 286 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV-----------------------FSNCGRLAGTLELPA-SVT 286 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT-----------------------TTTCTTCCEEEEECT-TCC
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH-----------------------hhCChhccEEEEEcc-cce
Confidence 77777666555567777778888877776 66666554 34677787 888877 666
Q ss_pred cCC-CcCCCCCCCCeeeCCCCcceeccc-cccCCCCCcEEec
Q 003011 483 EIP-KDIGCLSSLRTLDLRGNNFVSLPA-SIKQFTQMEELIL 522 (857)
Q Consensus 483 ~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 522 (857)
.++ ..|.++++|+.|++++|.++.++. .+.++++|+.|+.
T Consensus 287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 654 667788888888888888887765 5677888887753
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=1.2e-11 Score=121.32 Aligned_cols=132 Identities=18% Similarity=0.153 Sum_probs=90.7
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
+|+.|++++|.++.+|......++|+.|++++|...+. ..+..+++|+.|++++|.+....+..+..+++|+.|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 44555555555665543222334777777777765543 4577777888888888776654445557788888888888
Q ss_pred CccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCc----CCCCCCCCeeeCCCCcceec
Q 003011 432 TTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKD----IGCLSSLRTLDLRGNNFVSL 507 (857)
Q Consensus 432 n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~Ls~n~l~~l 507 (857)
|.++.+|... .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.+...
T Consensus 98 N~i~~~~~~~----------------------~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 98 NSLVELGDLD----------------------PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CCCCCGGGGG----------------------GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CcCCcchhhH----------------------hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 8887665410 034578888888888888888775 78889999999999886643
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.4e-10 Score=113.82 Aligned_cols=124 Identities=23% Similarity=0.224 Sum_probs=96.5
Q ss_pred CCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCC
Q 003011 400 LHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFR 479 (857)
Q Consensus 400 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n 479 (857)
.+.++++++.+.. +|..+ .++|+.|++++|.++.+|... +.++++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~-----------------------~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGV-----------------------FDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTT-----------------------TTTCTTCSEEECCSS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHH-----------------------hcCcccccEEECCCC
Confidence 3556666655433 34322 368999999999998777643 357899999999999
Q ss_pred CCccCCC-cCCCCCCCCeeeCCCCcceecccc-ccCCCCCcEEecccccccccCCCC---CCCcceeecccccCC
Q 003011 480 NITEIPK-DIGCLSSLRTLDLRGNNFVSLPAS-IKQFTQMEELILSNCNLLQSLPEL---PPSLILLEARNCKQL 549 (857)
Q Consensus 480 ~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~~l~~lp~l---~~sL~~L~i~~C~~L 549 (857)
.++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++|......+.. .++|+.|++++++--
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 9999775 468999999999999999988865 688999999999999776433332 478999999998644
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=7.8e-13 Score=132.59 Aligned_cols=115 Identities=23% Similarity=0.294 Sum_probs=56.7
Q ss_pred ceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcc
Q 003011 363 IEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNE 442 (857)
Q Consensus 363 l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~ 442 (857)
++.+|..+..+++|++|++++|.... +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~--- 110 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSG--- 110 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHH---
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCc---
Confidence 33444455555555555555554333 44 4555555555555555433 344444444555555555555544331
Q ss_pred cccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC--cCCCCCCCCeeeCCCCcce
Q 003011 443 DRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK--DIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 443 ~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~n~l~ 505 (857)
+..+++|+.|++++|.+.+++. .+..+++|+.|++++|.+.
T Consensus 111 ----------------------~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 111 ----------------------IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ----------------------HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred ----------------------cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 1234455555555555554332 4455555555555555544
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.07 E-value=5.9e-09 Score=115.99 Aligned_cols=128 Identities=12% Similarity=0.146 Sum_probs=77.2
Q ss_pred cCCCCccEEEEecCCccccccceeecC-CccccccCCeeEEEEeCCCCCCCCC-CCCCCCccEEEcCCCCCcccc-cCcC
Q 003011 181 ACMTNLRMLKFYVPKLSKLSDVKVHLH-NGLDYLSDELRYLHWHGYPLKTLPS-NFSPENLIELNLPYSKVEQMW-EGKK 257 (857)
Q Consensus 181 ~~l~~Lr~L~l~~n~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~-~~~l~~L~~L~Ls~n~l~~l~-~~~~ 257 (857)
..+..++.+.+.++ ...++ ..|.. .+|+.+.+..+ ++.++. .|.-.+|+.+.++. .++.++ ..+.
T Consensus 110 ~~~~~l~~i~ip~~--------i~~I~~~aF~~--~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~ 177 (401)
T 4fdw_A 110 EILKGYNEIILPNS--------VKSIPKDAFRN--SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFY 177 (401)
T ss_dssp EECSSCSEEECCTT--------CCEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTT
T ss_pred EecCCccEEEECCc--------cCEehHhhccc--CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhh
Confidence 34456666666442 12233 33333 25777777655 666644 34335688888875 667665 4567
Q ss_pred CCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCC
Q 003011 258 ESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPS 325 (857)
Q Consensus 258 ~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~ 325 (857)
.+.+|+.++|.+|. +..+| .|. ..+|+.+.|..+ ....-..+|.++++|+.+.+.. .++.++.
T Consensus 178 ~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~ 242 (401)
T 4fdw_A 178 YCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQ 242 (401)
T ss_dssp TCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECT
T ss_pred CcccCCeeecCCCc-ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCccc
Confidence 78888888888776 34454 344 578888888743 2222345677788888888765 2444443
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.04 E-value=1.6e-12 Score=130.37 Aligned_cols=133 Identities=19% Similarity=0.245 Sum_probs=106.8
Q ss_pred CCcceEEEccCcccccccc------ccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccC
Q 003011 373 LTELAELYMRQCTRLKSIS------SRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRIL 446 (857)
Q Consensus 373 l~~L~~L~L~~~~~l~~lp------~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~l 446 (857)
...++.++++.+...+..| ..+..+++|+.|++++|.+.. +| .+..+++|+.|++++|.++.+|..+.
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~---- 90 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDA---- 90 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHH----
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhh----
Confidence 3444445555554444444 478899999999999997766 66 88889999999999999988776432
Q ss_pred cCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcceeccc--cccCCCCCcEEeccc
Q 003011 447 PSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFVSLPA--SIKQFTQMEELILSN 524 (857)
Q Consensus 447 p~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~ 524 (857)
.+++|+.|++++|.++++| .+..+++|+.|++++|.++.+|. .+..+++|+.|++++
T Consensus 91 --------------------~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 91 --------------------VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp --------------------HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred --------------------cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 3588999999999999987 68889999999999999998775 788999999999999
Q ss_pred ccccccCC
Q 003011 525 CNLLQSLP 532 (857)
Q Consensus 525 c~~l~~lp 532 (857)
|+.....|
T Consensus 150 N~l~~~~~ 157 (198)
T 1ds9_A 150 NPLYNDYK 157 (198)
T ss_dssp CHHHHHHH
T ss_pred Cccccccc
Confidence 98766544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=2.1e-08 Score=111.56 Aligned_cols=58 Identities=12% Similarity=0.246 Sum_probs=29.0
Q ss_pred CCCCCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcceecc-ccccCCCCCcEEeccccc
Q 003011 466 PGLSSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFVSLP-ASIKQFTQMEELILSNCN 526 (857)
Q Consensus 466 ~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~ 526 (857)
.++++|+.+.|. +.+..++ ..|.++++|+.|.|..+ ++.++ ..+..+ +|+.|++.+|.
T Consensus 297 ~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 297 EGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred hCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 345555555555 2344433 34555555666665333 44443 234455 66666666553
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=1.2e-09 Score=106.68 Aligned_cols=88 Identities=20% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEee
Q 003011 398 KSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLS 477 (857)
Q Consensus 398 ~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls 477 (857)
++|+.|+|++|.+.+..|..+..+++|+.|+|++|.++.+|... +.++++|+.|+|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~-----------------------~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-----------------------FDKLTQLTQLDLN 89 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----------------------TTTCTTCCEEECC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH-----------------------hCCcchhhEEECC
Confidence 34444444444444444444555555555555555555544432 2245555555555
Q ss_pred CCCCccCCCc-CCCCCCCCeeeCCCCcceecc
Q 003011 478 FRNITEIPKD-IGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 478 ~n~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp 508 (857)
+|++..+|.. +..+++|+.|+|++|.+...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 5555555443 555666666666666655444
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.00 E-value=3.1e-08 Score=110.19 Aligned_cols=325 Identities=12% Similarity=0.109 Sum_probs=182.9
Q ss_pred eeeecChHhhcCCCCccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCCCCCCCCC-C-CCCCccEEEcCCCC
Q 003011 171 REIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYPLKTLPSN-F-SPENLIELNLPYSK 248 (857)
Q Consensus 171 ~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~ 248 (857)
....+...||.++.+|+.+.+..+ +...-..+|..+ .+|+.+++..+ ++.++.. | ++.+|+.+.++.+
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-------i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~- 127 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-------VREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM- 127 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-------CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-------ccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-
Confidence 356678899999999999998643 122223455555 57888888644 6666543 4 6777777766644
Q ss_pred Ccccc-cCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCC
Q 003011 249 VEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPS 325 (857)
Q Consensus 249 l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~ 325 (857)
++.+. ..+..+..++....... ..+. .|.++++|+.+.+.++ ....-...+..+.+|+.+.+..+ ++.++.
T Consensus 128 l~~i~~~aF~~~~~~~~~~~~~~---~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~ 201 (394)
T 4fs7_A 128 LKSIGVEAFKGCDFKEITIPEGV---TVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRD 201 (394)
T ss_dssp CCEECTTTTTTCCCSEEECCTTC---CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECT
T ss_pred eeeecceeeecccccccccCccc---cccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCc
Confidence 33333 33444443333322222 1222 4677777777777642 22222345666777777777542 444444
Q ss_pred CC--CCCCCcEEEcCCCCCC-CcccccccCcceEEecCccceecCc-cccCCCcceEEEccCccccccccccccCCCCCC
Q 003011 326 NI--HFRSPITLDFSDCLNL-TEFPQFSGNIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLH 401 (857)
Q Consensus 326 ~~--~l~~L~~L~Ls~~~~l-~~~p~~~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 401 (857)
.. .+..|+.+.+..+... ........+|+.+.+..+ +..+.. .+..+..|+.+.+..+. .......+..+..|+
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCC
T ss_pred hhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccc
Confidence 33 4555555554432111 111111124555554332 233322 24455666666665431 222233455556666
Q ss_pred EeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCC
Q 003011 402 LLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNI 481 (857)
Q Consensus 402 ~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l 481 (857)
.+...... .....+..+.+|+.+.+..+ ++.++... +.++.+|+.++|.. .+
T Consensus 280 ~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~a-----------------------F~~c~~L~~i~lp~-~v 331 (394)
T 4fs7_A 280 KVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEA-----------------------FESCTSLVSIDLPY-LV 331 (394)
T ss_dssp EEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTT-----------------------TTTCTTCCEECCCT-TC
T ss_pred eeccCcee---eccccccccccccccccccc-cceechhh-----------------------hcCCCCCCEEEeCC-cc
Confidence 65554432 11234555666666666433 33333322 56788999999864 46
Q ss_pred ccCC-CcCCCCCCCCeeeCCCCcceecc-ccccCCCCCcEEecccccccccCCCCCCCcceeecccccCCCcc
Q 003011 482 TEIP-KDIGCLSSLRTLDLRGNNFVSLP-ASIKQFTQMEELILSNCNLLQSLPELPPSLILLEARNCKQLQSL 552 (857)
Q Consensus 482 ~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~~l~~lp~l~~sL~~L~i~~C~~L~~l 552 (857)
+.+. ..|.++++|+.+++..+ ++.++ ..+.++++|+.+++..+- +.+. -...+|++|+.+
T Consensus 332 ~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~--~~~~--------~~F~~c~~L~~I 393 (394)
T 4fs7_A 332 EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL--EQYR--------YDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG--GGGG--------GGBCTTCEEEEE
T ss_pred cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC--EEhh--------heecCCCCCcEE
Confidence 6764 67888999999999876 77775 457889999999986542 2221 136778887765
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=2e-09 Score=104.79 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=62.1
Q ss_pred eeEEEEeCCCCCCCCCCCCCCCccEEEcCCCCCccc-ccCcCCCCCccEEEccCCCCCccCC-CCCCCCccceeeccCCc
Q 003011 217 LRYLHWHGYPLKTLPSNFSPENLIELNLPYSKVEQM-WEGKKESFKLKWIDLHHCQYLIRFP-DPLETPNLERICLSDCI 294 (857)
Q Consensus 217 Lr~L~l~~~~l~~lp~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~lp-~l~~l~~L~~L~L~~~~ 294 (857)
.+.|+++++.++.+|..+ ..+|++|+|++|+|+.+ |..+..+++|++|+|++|++....+ .+.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 456677777777776655 36677777777777766 3446667777777777776443333 24666666666666665
Q ss_pred cCCccCCcccCCCCCcEEeccCC
Q 003011 295 DLPCIPSSIENFNNLSILCLQGC 317 (857)
Q Consensus 295 ~~~~~p~~i~~l~~L~~L~L~~c 317 (857)
.....+..+..+++|+.|+|++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCEeCHHHhcCCCCCCEEEeCCC
Confidence 54444445666666666666654
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.6e-09 Score=104.35 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=89.8
Q ss_pred ceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCc
Q 003011 354 KQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTT 433 (857)
Q Consensus 354 ~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~ 433 (857)
+.++++++.+..+|..+. ++|+.|++++|.+.+..|..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 577888888888888764 889999999998887778888999999999999998877666677899999999999999
Q ss_pred cccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCCC
Q 003011 434 IQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIPK 486 (857)
Q Consensus 434 i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~ 486 (857)
++.+|... +..+++|+.|+|++|.+...+.
T Consensus 93 l~~l~~~~-----------------------~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGA-----------------------FDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCTTT-----------------------TTTCTTCSEEECCSSCBCTTBG
T ss_pred cceeCHHH-----------------------hccccCCCEEEeCCCCcccccc
Confidence 98887653 3468899999999998876543
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2.6e-09 Score=103.91 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=75.6
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAS 431 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~ 431 (857)
..+.++++++.++++|..+ .++|+.|+|++|.+.+..|..|..+++|+.|+|++|.+....+..+..+++|+.|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3467888888888888776 38899999999988887788899999999999999988877777789999999999999
Q ss_pred CccccCCCCc
Q 003011 432 TTIQEQPSSN 441 (857)
Q Consensus 432 n~i~~lp~~~ 441 (857)
|.++.+|...
T Consensus 88 N~l~~~~~~~ 97 (170)
T 3g39_A 88 NQLKSIPRGA 97 (170)
T ss_dssp SCCCCCCTTT
T ss_pred CccCEeCHHH
Confidence 9999887754
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.66 E-value=5.5e-08 Score=106.15 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=76.2
Q ss_pred eEEecCc-cceecCccccCCCcceEEEccC-ccccccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCC
Q 003011 355 QLYLCGT-AIEEVPSSVECLTELAELYMRQ-CTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLAST 432 (857)
Q Consensus 355 ~L~L~~~-~l~~lp~~l~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n 432 (857)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677777 8889999 99999999999996 7666666678999999999999999988888889999999999999999
Q ss_pred ccccCCCCcc
Q 003011 433 TIQEQPSSNE 442 (857)
Q Consensus 433 ~i~~lp~~~~ 442 (857)
.|+.+|...+
T Consensus 91 ~l~~~~~~~~ 100 (347)
T 2ifg_A 91 ALESLSWKTV 100 (347)
T ss_dssp CCSCCCSTTT
T ss_pred ccceeCHHHc
Confidence 9999887654
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.65 E-value=2.5e-06 Score=94.76 Aligned_cols=312 Identities=13% Similarity=0.079 Sum_probs=192.8
Q ss_pred CcEEEEEeecCCceeeecChHhhcCCCCccEEEEecCCccccccceeecCC-ccccccCCeeEEEEeCCCCCCCC-CCCC
Q 003011 158 DSIEGIFLDMSKIREIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHN-GLDYLSDELRYLHWHGYPLKTLP-SNFS 235 (857)
Q Consensus 158 ~~i~~i~L~~~~~~~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp-~~~~ 235 (857)
..++.+.+. .. ...+...+|.++++|+.+++..+- ..+++ .+... ..|+.+.+..+ +..+. ..|.
T Consensus 71 ~~L~~i~lp--~~-i~~I~~~aF~~c~~L~~i~lp~~l--------~~I~~~aF~~c-~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 71 RKVTEIKIP--ST-VREIGEFAFENCSKLEIINIPDSV--------KMIGRCTFSGC-YALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTEEEEECC--TT-CCEECTTTTTTCTTCCEECCCTTC--------CEECTTTTTTC-TTCCCCCCCTT-CCEECTTTTT
T ss_pred CCceEEEeC--CC-ccCcchhHhhCCCCCcEEEeCCCc--------eEccchhhccc-ccchhhcccCc-eeeecceeee
Confidence 456666553 21 345778999999999999996542 23333 34444 46666555432 44443 2342
Q ss_pred CCCccEEEcCCCCCcccc-cCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcEE
Q 003011 236 PENLIELNLPYSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSIL 312 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L 312 (857)
-..+....+... +..+. ..+.++.+|+.+.+.++. ..++ .|.++.+|+.+.+..+ ....-...+.++..|+.+
T Consensus 138 ~~~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEG-VTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCcc-ccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 223333333322 22332 456788889998887653 3444 5778888888888753 222223456777888877
Q ss_pred eccCCCCCcccCCCC-CCCCCcEEEcCCCCCCCccc----ccccCcceEEecCccceecCccccCCCcceEEEccCcccc
Q 003011 313 CLQGCESLRRFPSNI-HFRSPITLDFSDCLNLTEFP----QFSGNIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRL 387 (857)
Q Consensus 313 ~L~~c~~l~~lp~~~-~l~~L~~L~Ls~~~~l~~~p----~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l 387 (857)
.+... ...+.... ...+|+.+.+... ...+. .....++.+.+..+...--...+..+..++.+.......
T Consensus 214 ~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 214 EFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp CCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEE-
T ss_pred ecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceee-
Confidence 77542 22232222 5667777777543 22222 122367777776654433344467778888887765432
Q ss_pred ccccccccCCCCCCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCC
Q 003011 388 KSISSRICKLKSLHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPG 467 (857)
Q Consensus 388 ~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~ 467 (857)
....+..+.+|+.+.+..+ ....-...|.++.+|+.+++..+ ++.++... |.+
T Consensus 289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a-----------------------F~~ 341 (394)
T 4fs7_A 289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS-----------------------FRG 341 (394)
T ss_dssp --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT-----------------------TTT
T ss_pred --ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh-----------------------ccC
Confidence 2235778899999998764 33333457889999999988643 55555443 457
Q ss_pred CCCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcceeccccccCCCCCcEE
Q 003011 468 LSSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEEL 520 (857)
Q Consensus 468 l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 520 (857)
+.+|+.+.+..+ ++.+. ..|.++++|+.+++..+ ++.+...+.++++|+.+
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence 889999999766 77754 57889999999998653 55555667778877765
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=7.6e-06 Score=90.80 Aligned_cols=304 Identities=13% Similarity=0.100 Sum_probs=159.4
Q ss_pred eeecChHhhcCCC-CccEEEEecCCccccccceeecCCccccccCCeeEEEEeCCC---CCCCCC-CC-CCCCccEEEcC
Q 003011 172 EIHLSSRAFACMT-NLRMLKFYVPKLSKLSDVKVHLHNGLDYLSDELRYLHWHGYP---LKTLPS-NF-SPENLIELNLP 245 (857)
Q Consensus 172 ~~~l~~~~f~~l~-~Lr~L~l~~n~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~---l~~lp~-~~-~l~~L~~L~Ls 245 (857)
...+...+|.+++ .|+.+.+-.+ +...-..+|... .+|+.+.+..+. ++.++. .| .+.+|+.+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-------vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~ 122 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-------VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPIL 122 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-------CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGG
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-------eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccC
Confidence 4567788998885 5888888543 222234455555 588888887663 666644 35 67788877776
Q ss_pred CCCCcccc-cCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcc
Q 003011 246 YSKVEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRR 322 (857)
Q Consensus 246 ~n~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~ 322 (857)
.+ ++.++ ..+..+.+|+.+.+..+. ..++ .+..+.+|+.+.+..+ ...+........+|+.+.+.. .+..
T Consensus 123 ~~-~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~--~~~~ 195 (394)
T 4gt6_A 123 DS-VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA--KVTR 195 (394)
T ss_dssp TT-CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT--TCCE
T ss_pred Cc-cceehhhhhhhhccccccccccee--eeecccceecccccccccccce--eeEeccccccccceeEEEECC--cccc
Confidence 54 55554 345778888888886542 3344 5777788888877652 333333322345677777643 2222
Q ss_pred cCCCC--CCCCCcEEEcCCCCCCCcccccccCcceEEecCccceec-CccccCCCcceEEEccCccccccccccccCCCC
Q 003011 323 FPSNI--HFRSPITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEV-PSSVECLTELAELYMRQCTRLKSISSRICKLKS 399 (857)
Q Consensus 323 lp~~~--~l~~L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~ 399 (857)
+.... .+.++........... ...... ...+..... .........+..+.+... ....-...|..+.+
T Consensus 196 i~~~af~~c~~l~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~ 266 (394)
T 4gt6_A 196 IGTNAFSECFALSTITSDSESYP-AIDNVL-------YEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAY 266 (394)
T ss_dssp ECTTTTTTCTTCCEEEECCSSSC-BSSSCE-------EEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSS
T ss_pred cccchhhhccccceecccccccc-ccccee-------ecccccccccccccccccccceEEcCCc-ceEcccceeeeccc
Confidence 22211 4455555444332110 000000 000000000 000001112222222110 11111234556666
Q ss_pred CCEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCC
Q 003011 400 LHLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFR 479 (857)
Q Consensus 400 L~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n 479 (857)
|+.+.+.+. ....-...|.++.+|+.+.+. +.++.++... |.++.+|+.+.|..+
T Consensus 267 L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~a-----------------------F~~c~~L~~i~lp~~ 321 (394)
T 4gt6_A 267 LASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESV-----------------------FAGCISLKSIDIPEG 321 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTT-----------------------TTTCTTCCEEECCTT
T ss_pred ccEEecccc-cceecCcccccccccccccCC-CcccccCcee-----------------------ecCCCCcCEEEeCCc
Confidence 666666543 122223456667777777764 3444454443 346667777777543
Q ss_pred CCccCC-CcCCCCCCCCeeeCCCCcceecc-ccccCCCCCcEEeccccc
Q 003011 480 NITEIP-KDIGCLSSLRTLDLRGNNFVSLP-ASIKQFTQMEELILSNCN 526 (857)
Q Consensus 480 ~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~c~ 526 (857)
++.+. ..|.++.+|+.+.|..+ ++.+. ..+.++++|+.+++.++.
T Consensus 322 -v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 322 -ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred -ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 55543 45667777777777543 55554 346677777777777654
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.62 E-value=3.2e-09 Score=117.00 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=72.0
Q ss_pred CcceEEEccCcccccccccc-ccCCCCCCEeeccCCCCCCcccccc-----CCCCCCCEEeccCCccccCCCCcccccCc
Q 003011 374 TELAELYMRQCTRLKSISSR-ICKLKSLHLLSLDDCCRLERFPEIT-----ETMECLEYFSLASTTIQEQPSSNEDRILP 447 (857)
Q Consensus 374 ~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~Ls~~~~~~~~~~~l-----~~l~~L~~L~L~~n~i~~lp~~~~~~~lp 447 (857)
++|++|+|++|.+....... ...+++|+.|+|++|.+...-...+ ...++|+.|+|++|.++........
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~---- 176 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM---- 176 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH----
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH----
Confidence 45666666665543221111 1223455666666665543222222 2345666666666665431110000
Q ss_pred CCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeCCCCcce-----eccccccCCCCC
Q 003011 448 SSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPKDIGCLSSLRTLDLRGNNFV-----SLPASIKQFTQM 517 (857)
Q Consensus 448 ~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L 517 (857)
. .+..+++|++|+|++|.+.+ ++..+...++|+.|+|++|.|+ .++..+...++|
T Consensus 177 ~---------------~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L 241 (372)
T 3un9_A 177 E---------------GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241 (372)
T ss_dssp H---------------HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred H---------------HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence 0 01235667777777777664 3445556667777777777766 234445566777
Q ss_pred cEEeccccccc
Q 003011 518 EELILSNCNLL 528 (857)
Q Consensus 518 ~~L~L~~c~~l 528 (857)
++|+|++|+..
T Consensus 242 ~~L~Ls~N~i~ 252 (372)
T 3un9_A 242 ELLHLYFNELS 252 (372)
T ss_dssp CEEECTTSSCC
T ss_pred CEEeccCCCCC
Confidence 78888777643
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=1.1e-07 Score=103.82 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=56.8
Q ss_pred EEccCccccccccccccCCCCCCEeeccC-CCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccc
Q 003011 379 LYMRQCTRLKSISSRICKLKSLHLLSLDD-CCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGC 457 (857)
Q Consensus 379 L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~-~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~ 457 (857)
++.+++..+..+|. +..+++|+.|+|++ |.+....+..|..+++|+.|+|++|.|+.++...
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---------------- 75 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA---------------- 75 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG----------------
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHH----------------
Confidence 45555434445666 66666666666664 5555544455666666666666666666555433
Q ss_pred cCCcCCCCCCCCCCcEEEeeCCCCccCCCcCCCCCCCCeeeCCCCcce
Q 003011 458 RGLILPPLPGLSSLTGLNLSFRNITEIPKDIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 458 ~~~~~~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 505 (857)
|.++++|+.|+|++|+++.+|..+.....|+.|+|.+|.+.
T Consensus 76 -------~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 76 -------FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp -------GGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred -------hcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCcc
Confidence 22455566666666666655543322222555666555554
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=5.5e-09 Score=115.04 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=95.3
Q ss_pred CCCccEEEccCCCCCccCC-C----CC-CCCccceeeccCCccCCccCCcc-cCCCCCcEEeccCCCCCcccCCCCCCCC
Q 003011 259 SFKLKWIDLHHCQYLIRFP-D----PL-ETPNLERICLSDCIDLPCIPSSI-ENFNNLSILCLQGCESLRRFPSNIHFRS 331 (857)
Q Consensus 259 l~~L~~L~Ls~~~~l~~lp-~----l~-~l~~L~~L~L~~~~~~~~~p~~i-~~l~~L~~L~L~~c~~l~~lp~~~~l~~ 331 (857)
+++|+.|+|++|.+..... . +. ..++|++|+|++|.........+ ..+++|+.|+|++|.....-...+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~--- 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR--- 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH---
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH---
Confidence 4568888888887533211 1 11 23577777777776543222222 2345666666666532111000000
Q ss_pred CcEEEcCCCCCCCcccccccCcceEEecCcccee-----cCccccCCCcceEEEccCccccc----cccccccCCCCCCE
Q 003011 332 PITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEE-----VPSSVECLTELAELYMRQCTRLK----SISSRICKLKSLHL 402 (857)
Q Consensus 332 L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~ 402 (857)
..+.....+|++|+|++|.++. ++..+...++|++|+|++|.+.. .++..+...++|+.
T Consensus 148 ------------~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 148 ------------DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQE 215 (372)
T ss_dssp ------------HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCE
T ss_pred ------------HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCe
Confidence 0000011245555555555543 44556677888889998887653 23555677788999
Q ss_pred eeccCCCCCC----ccccccCCCCCCCEEeccCCcccc
Q 003011 403 LSLDDCCRLE----RFPEITETMECLEYFSLASTTIQE 436 (857)
Q Consensus 403 L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~ 436 (857)
|+|++|.+.. .+...+...++|++|+|++|.|+.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 9999988764 344556677889999999998764
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=5.6e-05 Score=83.17 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCCCCCCcEEEeeCCCCccCC-CcCCCCCCCCeeeCCCCcceeccc-cccCCCCCcEEecc
Q 003011 465 LPGLSSLTGLNLSFRNITEIP-KDIGCLSSLRTLDLRGNNFVSLPA-SIKQFTQMEELILS 523 (857)
Q Consensus 465 l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~ 523 (857)
+.++.+|+.+.+.++.++.++ ..|.++++|+.+.|..+ ++.+.. .+.++++|+.+.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 456777777777777777754 45677778888877643 665553 45666777766654
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=2.5e-07 Score=101.07 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=89.0
Q ss_pred cCccccCCCcceEEEccCccccccccccccCCCCCCEeeccCCCCCCccccccC--CCCCCCEEeccCC--ccccCCCCc
Q 003011 366 VPSSVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSLDDCCRLERFPEITE--TMECLEYFSLAST--TIQEQPSSN 441 (857)
Q Consensus 366 lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~Ls~~~~~~~~~~~l~--~l~~L~~L~L~~n--~i~~lp~~~ 441 (857)
++..+..+++|+.|++++|... .++. + .+++|+.|+|..|.+.......+. .+++|+.|+|+.+ ....-+ .+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-DM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-CG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-hH
Confidence 3344566788888888877332 2333 3 378888888887776544333333 6788888887532 111000 00
Q ss_pred ccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-CCCc---CCCCCCCCeeeCCCCccee-----cccccc
Q 003011 442 EDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-IPKD---IGCLSSLRTLDLRGNNFVS-----LPASIK 512 (857)
Q Consensus 442 ~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-lp~~---l~~l~~L~~L~Ls~n~l~~-----lp~~l~ 512 (857)
. .+.. ......+|+|+.|+|++|.+.+ .+.. ...+++|+.|+|+.|.+.. ++..+.
T Consensus 240 ~------~l~~---------~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~ 304 (362)
T 2ra8_A 240 N------VFRP---------LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304 (362)
T ss_dssp G------GTGG---------GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH
T ss_pred H------HHHH---------HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc
Confidence 0 0000 0001357899999999998875 2111 1357889999999988773 555666
Q ss_pred CCCCCcEEeccccccc
Q 003011 513 QFTQMEELILSNCNLL 528 (857)
Q Consensus 513 ~l~~L~~L~L~~c~~l 528 (857)
.+++|+.|+|++|...
T Consensus 305 ~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 305 KIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHTTCSEEECCSBBCC
T ss_pred cCCcceEEECCCCcCC
Confidence 7888999999888643
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=0.0002 Score=78.64 Aligned_cols=285 Identities=11% Similarity=0.063 Sum_probs=146.8
Q ss_pred eeecChHhhcCCCCccEEEEecCCccccccceeecCC-ccccccCCeeEEEEeCCCCCCCCCC-CCCCCccEEEcCCCCC
Q 003011 172 EIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHN-GLDYLSDELRYLHWHGYPLKTLPSN-FSPENLIELNLPYSKV 249 (857)
Q Consensus 172 ~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~~l~~L~~L~Ls~n~l 249 (857)
...+...+|.++.+|+.+.|..+- ..+.+ .|... +|+.+.+.. .++.++.. |...+|+.+.++.+ +
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~v--------~~Ig~~aF~~c--~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~~-~ 124 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVASTV--------TSIGDGAFADT--KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPGA-T 124 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTTC--------CEECTTTTTTC--CCCEEEECT-TCCEECTTTTTTCCCSEEECCTT-C
T ss_pred ccChHHHHhhCCCCCCEEEeCCcc--------eEechhhhcCC--CCceEECCc-eeeEeccceeccCCcccccCCCc-c
Confidence 445678889999999998885431 23333 33332 466666643 35555443 44457888887754 4
Q ss_pred cccccCcCCCCCccEEEccCCCCCccCCCCCCCCccceeeccCCccCCccCCccc-CCCCCcEEeccCCCCCcccCCCCC
Q 003011 250 EQMWEGKKESFKLKWIDLHHCQYLIRFPDPLETPNLERICLSDCIDLPCIPSSIE-NFNNLSILCLQGCESLRRFPSNIH 328 (857)
Q Consensus 250 ~~l~~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~~L~~L~L~~~~~~~~~p~~i~-~l~~L~~L~L~~c~~l~~lp~~~~ 328 (857)
+.+....-...+|+.+.+..+-.......+....+|+.+.+............+. ........... .
T Consensus 125 ~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 192 (379)
T 4h09_A 125 TEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP------------A 192 (379)
T ss_dssp CEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC------------T
T ss_pred ccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccc------------c
Confidence 4443333222345555554432111112455666666665554322111000000 00000000000 1
Q ss_pred CCCCcEEEcCCCCCCCc--ccccccCcceEEecCccceecCc-cccCCCcceEEEccCccccccccccccCCCCCCEeec
Q 003011 329 FRSPITLDFSDCLNLTE--FPQFSGNIKQLYLCGTAIEEVPS-SVECLTELAELYMRQCTRLKSISSRICKLKSLHLLSL 405 (857)
Q Consensus 329 l~~L~~L~Ls~~~~l~~--~p~~~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 405 (857)
...+..+.+........ ......+++.+.+..+ +..++. .+..+..|+.+.+..+ ....-...+..+.+|+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l 270 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNF 270 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccc
Confidence 11222222211100000 0001113444444322 333332 3556677777777553 22222345667778888877
Q ss_pred cCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCccCC
Q 003011 406 DDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITEIP 485 (857)
Q Consensus 406 s~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~lp 485 (857)
... ....-...|.++.+|+.+.+.++.++.++... |.++.+|+.+.|..+ ++.+.
T Consensus 271 ~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a-----------------------F~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 271 YAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV-----------------------FMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp CCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT-----------------------TTTCTTCCEEECCTT-CCEEC
T ss_pred ccc-ceeccccccccccccccccccccccceehhhh-----------------------hcCCCCCCEEEcCcc-ccEEH
Confidence 543 22233346778888888888887777776654 457888999998654 66665
Q ss_pred -CcCCCCCCCCeeeCCCCcceecc
Q 003011 486 -KDIGCLSSLRTLDLRGNNFVSLP 508 (857)
Q Consensus 486 -~~l~~l~~L~~L~Ls~n~l~~lp 508 (857)
.+|.++++|+.+.+..+ ++.+.
T Consensus 326 ~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 326 VYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp TTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred HHHhhCCCCCCEEEECCc-cCEEc
Confidence 56888999999988654 55554
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.26 E-value=5.9e-05 Score=83.56 Aligned_cols=303 Identities=13% Similarity=0.139 Sum_probs=177.9
Q ss_pred eeecChHhhcCCCCccEEEEecCCccccccceeecCC-ccccccCCeeEEEEeCCCCCCCCCC-C-CCCCccEEEcCCCC
Q 003011 172 EIHLSSRAFACMTNLRMLKFYVPKLSKLSDVKVHLHN-GLDYLSDELRYLHWHGYPLKTLPSN-F-SPENLIELNLPYSK 248 (857)
Q Consensus 172 ~~~l~~~~f~~l~~Lr~L~l~~n~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~~L~Ls~n~ 248 (857)
...+...+|.++.+|+.+.+..|... ....+.+ .|... .+|+.+.+.. .++.++.. | .+.+|+.+.+..+
T Consensus 75 vt~Ig~~AF~~C~~L~~i~~~~n~p~----~l~~Ig~~aF~~c-~~L~~i~~~~-~~~~I~~~aF~~c~~L~~i~lp~~- 147 (394)
T 4gt6_A 75 VTEIGSNAFYNCTSLKRVTIQDNKPS----CVKKIGRQAFMFC-SELTDIPILD-SVTEIDSEAFHHCEELDTVTIPEG- 147 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEEGGGCCC----CCCEECTTTTTTC-TTCCBCGGGT-TCSEECTTTTTTCTTCCEEECCTT-
T ss_pred eeEEhHHHhhCCccCceEeecCCCCC----eeeEechhhchhc-ccceeeccCC-ccceehhhhhhhhcccccccccce-
Confidence 34567899999999999999876411 1223333 34333 4666665543 35556443 4 8899999999754
Q ss_pred Ccccc-cCcCCCCCccEEEccCCCCCccCC--CCCCCCccceeeccCCccCCccCCcccCCCCCcEEeccCCCCCcccCC
Q 003011 249 VEQMW-EGKKESFKLKWIDLHHCQYLIRFP--DPLETPNLERICLSDCIDLPCIPSSIENFNNLSILCLQGCESLRRFPS 325 (857)
Q Consensus 249 l~~l~-~~~~~l~~L~~L~Ls~~~~l~~lp--~l~~l~~L~~L~L~~~~~~~~~p~~i~~l~~L~~L~L~~c~~l~~lp~ 325 (857)
++.++ ..+..+.+|+.+.+..+ +..+. .|. ..+|+.+.+... ....-..++..+.+|....... .....+..
T Consensus 148 ~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~-~~~~~~~~ 222 (394)
T 4gt6_A 148 VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITSDS-ESYPAIDN 222 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEECC-SSSCBSSS
T ss_pred eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecccc-cccccccc
Confidence 45554 45688899999999765 34444 344 367888888652 2222344566777777776644 22222221
Q ss_pred CC--CCCC--CcEEEcCCCCCCCcccccccCcceEEecCccceecC-ccccCCCcceEEEccCccccccccccccCCCCC
Q 003011 326 NI--HFRS--PITLDFSDCLNLTEFPQFSGNIKQLYLCGTAIEEVP-SSVECLTELAELYMRQCTRLKSISSRICKLKSL 400 (857)
Q Consensus 326 ~~--~l~~--L~~L~Ls~~~~l~~~p~~~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L 400 (857)
.. .... ........+. .+..+.+. +.+..+. ..+..++.|+.+.+.... ...-...+..+++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L 290 (394)
T 4gt6_A 223 VLYEKSANGDYALIRYPSQR----------EDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPAL 290 (394)
T ss_dssp CEEEECTTSCEEEEECCTTC----------CCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred eeeccccccccccccccccc----------ccceEEcC-CcceEcccceeeecccccEEeccccc-ceecCccccccccc
Confidence 11 0000 0001111111 11222221 2233333 246677888888886532 22233457788999
Q ss_pred CEeeccCCCCCCccccccCCCCCCCEEeccCCccccCCCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCC
Q 003011 401 HLLSLDDCCRLERFPEITETMECLEYFSLASTTIQEQPSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRN 480 (857)
Q Consensus 401 ~~L~Ls~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~lp~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~ 480 (857)
+.+.+.. .....-...|.++.+|+.+.+..+ ++.+.... |.++.+|+.+.|.. .
T Consensus 291 ~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a-----------------------F~~C~~L~~i~ip~-s 344 (394)
T 4gt6_A 291 QDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDA-----------------------FAGCEQLERIAIPS-S 344 (394)
T ss_dssp CEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT-----------------------TTTCTTCCEEEECT-T
T ss_pred ccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhH-----------------------hhCCCCCCEEEECc-c
Confidence 9998864 233333457888999999998653 55554443 55789999999964 4
Q ss_pred CccCC-CcCCCCCCCCeeeCCCCcceeccccccCCCCCcEEeccccc
Q 003011 481 ITEIP-KDIGCLSSLRTLDLRGNNFVSLPASIKQFTQMEELILSNCN 526 (857)
Q Consensus 481 l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~c~ 526 (857)
++.+. ..|.++++|+.+++.++... + ..+..+..|+.+.+..+.
T Consensus 345 v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 345 VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence 77765 57889999999999987633 1 355677788888776543
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.25 E-value=3.2e-07 Score=100.21 Aligned_cols=150 Identities=14% Similarity=0.173 Sum_probs=86.3
Q ss_pred CcceEEecCccceecCccccCCCcceEEEccCcccccccccccc--CCCCCCEeeccCCCC-------CCcccccc--CC
Q 003011 352 NIKQLYLCGTAIEEVPSSVECLTELAELYMRQCTRLKSISSRIC--KLKSLHLLSLDDCCR-------LERFPEIT--ET 420 (857)
Q Consensus 352 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~Ls~~~~-------~~~~~~~l--~~ 420 (857)
+|+.|.++++.-..++. + .+++|+.|++..|.........+. .+++|+.|+|+.+.. ...+...+ ..
T Consensus 173 ~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 173 LLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp TCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 44444444442123333 2 267777777776665433323333 677888887753211 11111222 24
Q ss_pred CCCCCEEeccCCccccC-CCCcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEeeCCCCcc-----CCCcCCCCCCC
Q 003011 421 MECLEYFSLASTTIQEQ-PSSNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNLSFRNITE-----IPKDIGCLSSL 494 (857)
Q Consensus 421 l~~L~~L~L~~n~i~~l-p~~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L 494 (857)
+++|+.|.+.+|.+... +..+.. ...+++|++|+|+.|.+.+ ++..+..+++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~---------------------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L 309 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLE---------------------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHH---------------------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHh---------------------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcc
Confidence 78888888888776521 111110 1246889999999998886 45555678999
Q ss_pred CeeeCCCCccee-ccccccC-CCCCcEEeccccc
Q 003011 495 RTLDLRGNNFVS-LPASIKQ-FTQMEELILSNCN 526 (857)
Q Consensus 495 ~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~L~~c~ 526 (857)
+.|+|++|.++. .-..+.. + ...+++++++
T Consensus 310 ~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 310 KFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred eEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 999999998762 1112222 2 3567777765
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.84 E-value=5.7e-06 Score=79.62 Aligned_cols=86 Identities=13% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCccEEEcCCCCCccc-ccCcCCCCCccEEEccCCCCCccC--CCCCCC----CccceeeccCCccCC-ccCCcccCCC
Q 003011 236 PENLIELNLPYSKVEQM-WEGKKESFKLKWIDLHHCQYLIRF--PDPLET----PNLERICLSDCIDLP-CIPSSIENFN 307 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~l--p~l~~l----~~L~~L~L~~~~~~~-~~p~~i~~l~ 307 (857)
-.+|++||++++.|+.. ...+..+++|++|+|++|..++.- ..++.+ ++|++|+|++|..++ .--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 34677777777766532 144567888888888888754431 123333 467777777776433 2223455677
Q ss_pred CCcEEeccCCCCCc
Q 003011 308 NLSILCLQGCESLR 321 (857)
Q Consensus 308 ~L~~L~L~~c~~l~ 321 (857)
+|++|+|++|..++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 77777777776555
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.73 E-value=7.8e-06 Score=80.27 Aligned_cols=60 Identities=13% Similarity=0.148 Sum_probs=38.0
Q ss_pred CCCCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeC--CCCcce-----eccccccCCCCCcEEecccccc
Q 003011 468 LSSLTGLNLSFRNITE-----IPKDIGCLSSLRTLDL--RGNNFV-----SLPASIKQFTQMEELILSNCNL 527 (857)
Q Consensus 468 l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L--s~n~l~-----~lp~~l~~l~~L~~L~L~~c~~ 527 (857)
.++|++|+|++|.+.+ +...+...++|++|+| ++|.+. .+...+...++|++|+|++|..
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3556666666666664 3445556667777777 667665 2445556667777777777653
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=2.4e-05 Score=75.25 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=66.7
Q ss_pred cccCcCCCCCccEEEccCCCCCcc-CCCCCCCCccceeeccCCccCC-ccCCcccCC----CCCcEEeccCCCCCcc--c
Q 003011 252 MWEGKKESFKLKWIDLHHCQYLIR-FPDPLETPNLERICLSDCIDLP-CIPSSIENF----NNLSILCLQGCESLRR--F 323 (857)
Q Consensus 252 l~~~~~~l~~L~~L~Ls~~~~l~~-lp~l~~l~~L~~L~L~~~~~~~-~~p~~i~~l----~~L~~L~L~~c~~l~~--l 323 (857)
+|.....-.+|+.|||++|.+... +..+.++++|++|+|++|..+. .--..++.+ ++|++|+|++|..++. +
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 444333445799999999984432 4467889999999999997543 223345554 4799999999987773 2
Q ss_pred CCCCCCCCCcEEEcCCCCCCCc
Q 003011 324 PSNIHFRSPITLDFSDCLNLTE 345 (857)
Q Consensus 324 p~~~~l~~L~~L~Ls~~~~l~~ 345 (857)
.....+++|++|++++|..++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2212689999999999987764
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.47 E-value=2.5e-05 Score=76.57 Aligned_cols=118 Identities=11% Similarity=0.044 Sum_probs=80.0
Q ss_pred cccCCCcceEEEccCc-cccc----cccccccCCCCCCEeeccCCCCCC----ccccccCCCCCCCEEeccCCccccCCC
Q 003011 369 SVECLTELAELYMRQC-TRLK----SISSRICKLKSLHLLSLDDCCRLE----RFPEITETMECLEYFSLASTTIQEQPS 439 (857)
Q Consensus 369 ~l~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~~lp~ 439 (857)
.+...+.|++|+|++| .+.. .+...+...++|++|+|++|.+.. .+...+...++|++|+|++|.|+....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3556778888888887 5432 234456667888888888887654 234555666788888888888763210
Q ss_pred CcccccCcCCcceeeccccCCcCCCCCCCCCCcEEEe--eCCCCcc-----CCCcCCCCCCCCeeeCCCCcce
Q 003011 440 SNEDRILPSSIANWSYGCRGLILPPLPGLSSLTGLNL--SFRNITE-----IPKDIGCLSSLRTLDLRGNNFV 505 (857)
Q Consensus 440 ~~~~~~lp~~L~~L~l~~~~~~~~~l~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~Ls~n~l~ 505 (857)
.... . .+...++|++|+| ++|.+.. +...+...++|++|+|++|.+.
T Consensus 111 ~~l~----~---------------~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALV----E---------------ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHH----H---------------GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHH----H---------------HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 0000 0 0334678999999 7888876 4455666789999999999875
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.43 E-value=7.5e-05 Score=77.27 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=54.3
Q ss_pred CCCCCcEEEeeCCCCccC---CCcCCCCCCCCeeeCCCCcceeccccccCCC--CCcEEecccccccccCC
Q 003011 467 GLSSLTGLNLSFRNITEI---PKDIGCLSSLRTLDLRGNNFVSLPASIKQFT--QMEELILSNCNLLQSLP 532 (857)
Q Consensus 467 ~l~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~c~~l~~lp 532 (857)
++++|+.|+|++|+++++ |..+..+++|+.|+|++|.|+.+. .+..+. +|++|+|++|+....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 578999999999999984 456678999999999999999773 444444 99999999999877666
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=6.5e-05 Score=77.76 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=39.6
Q ss_pred CCCccEEEcCCCCCcccc---cCcCCCCCccEEEccCCCCCccCCCCCCCC--ccceeeccCCccCCccCC-------cc
Q 003011 236 PENLIELNLPYSKVEQMW---EGKKESFKLKWIDLHHCQYLIRFPDPLETP--NLERICLSDCIDLPCIPS-------SI 303 (857)
Q Consensus 236 l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~~~~l~~lp~l~~l~--~L~~L~L~~~~~~~~~p~-------~i 303 (857)
+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.+.. +.++..+. +|++|+|++|...+.+|. .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 455666666666555432 333456666666666665332 22222222 566666666655544432 24
Q ss_pred cCCCCCcEEe
Q 003011 304 ENFNNLSILC 313 (857)
Q Consensus 304 ~~l~~L~~L~ 313 (857)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5566666665
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.29 E-value=0.023 Score=51.61 Aligned_cols=53 Identities=21% Similarity=0.242 Sum_probs=38.3
Q ss_pred EEEEeCCCCC--CCCCCCCCCCccEEEcCCCCCcccccC-cCCCCCccEEEccCCCC
Q 003011 219 YLHWHGYPLK--TLPSNFSPENLIELNLPYSKVEQMWEG-KKESFKLKWIDLHHCQY 272 (857)
Q Consensus 219 ~L~l~~~~l~--~lp~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~~~~ 272 (857)
.++.+++.++ .+|..+ ..+|++|+|++|+|+.++.+ +..+++|++|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5667777777 777654 34678888888888888754 46677888888887764
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.01 E-value=0.031 Score=50.81 Aligned_cols=54 Identities=22% Similarity=0.342 Sum_probs=41.8
Q ss_pred cEEEeeCCCCc--cCCCcCCCCCCCCeeeCCCCcceecccc-ccCCCCCcEEecccccc
Q 003011 472 TGLNLSFRNIT--EIPKDIGCLSSLRTLDLRGNNFVSLPAS-IKQFTQMEELILSNCNL 527 (857)
Q Consensus 472 ~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~c~~ 527 (857)
..++.++++++ .+|..+ .++|+.|+|++|.|+.+|.. +..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777888887 777643 34788999999998888754 57788899999988874
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.80 E-value=0.012 Score=57.58 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=16.6
Q ss_pred CCCcEEEeeCCCCcc-----CCCcCCCCCCCCeeeCCCC
Q 003011 469 SSLTGLNLSFRNITE-----IPKDIGCLSSLRTLDLRGN 502 (857)
Q Consensus 469 ~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~n 502 (857)
+.|+.|+|++|.|.. +-..+..-+.|+.|+|++|
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 445555555555543 2333444445555555543
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.13 E-value=0.026 Score=55.06 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=43.7
Q ss_pred cCCCcceEEEccCc-cccc----cccccccCCCCCCEeeccCCCCCC----ccccccCCCCCCCEEeccCCccc
Q 003011 371 ECLTELAELYMRQC-TRLK----SISSRICKLKSLHLLSLDDCCRLE----RFPEITETMECLEYFSLASTTIQ 435 (857)
Q Consensus 371 ~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~Ls~~~~~~----~~~~~l~~l~~L~~L~L~~n~i~ 435 (857)
..-+.|++|+|+++ .+.. .+-..+..-+.|+.|+|++|.+.. .+.+.+..-+.|+.|+|+.|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 44567778888775 3321 234455666788888888887763 34455566678888888888876
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.40 E-value=1.4 Score=46.77 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=68.1
Q ss_pred hHHHHHHhcCCChHHHHHHHhhhcC-CCHHHHH-HHHHHHhhcCChhHHHHHHHhHhccCHHHHHHhhhhhcCCCCCCHH
Q 003011 3 LSTRVVDYAKGNPLALKVLGSFFYG-RRKVDWE-NALHNLKRISDRDVYEVLKISYDELNWEEKNIFLDIACFFKGEDKD 80 (857)
Q Consensus 3 l~~~iv~~c~GlPLAlkvlG~~L~~-k~~~~W~-~~l~~L~~~~~~~i~~~Lk~SYd~L~~~~K~cFl~~a~Fp~~~~~~ 80 (857)
...+|++.++|.|+++..++..+.. .+..+|- ...+.....-.. ++-++.++ ++..+.++..+|+ ......
T Consensus 227 ~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~l~~~--~~~~~~~l~~la~--g~~~~~ 299 (350)
T 2qen_A 227 EIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMG---ELEELRRR--SPRYVDILRAIAL--GYNRWS 299 (350)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHHHHHHH--CHHHHHHHHHHHT--TCCSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHH---HHHHHHhC--ChhHHHHHHHHHh--CCCCHH
Confidence 4578899999999999999876532 2332221 111111110001 11122222 7899999999998 223556
Q ss_pred HHHHHhc-CC-Cc----hHHHHHHhhcccceeeecCCeEec-cHHHHHH
Q 003011 81 YVTRIQD-DP-DF----VRYVLNVLVNKSLITISSYNKLEM-HDLLEEM 122 (857)
Q Consensus 81 ~l~~~~~-~~-g~----~~~~l~~Li~rsLi~~~~~~~~~M-HDLl~dl 122 (857)
.+...+. +. |. ...+++.|+++++|... ++.+.+ |.++++.
T Consensus 300 ~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 300 LIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHH
Confidence 6655542 11 34 57899999999999887 577776 5565543
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.87 E-value=0.65 Score=49.45 Aligned_cols=110 Identities=17% Similarity=0.100 Sum_probs=69.6
Q ss_pred HHHHHhcCCChHHHHHHHhhhcC-CCHHHHHH-HHHHHhhcCChhHHHHHH-HhHh--ccCHHHHHHhhhhhcCCCCCCH
Q 003011 5 TRVVDYAKGNPLALKVLGSFFYG-RRKVDWEN-ALHNLKRISDRDVYEVLK-ISYD--ELNWEEKNIFLDIACFFKGEDK 79 (857)
Q Consensus 5 ~~iv~~c~GlPLAlkvlG~~L~~-k~~~~W~~-~l~~L~~~~~~~i~~~Lk-~SYd--~L~~~~K~cFl~~a~Fp~~~~~ 79 (857)
.+|+++++|.|+++..++..+.. .+..+|-. ..+... ..+...+. +.|+ .|++..+..+..+|+- . +.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g--~-~~ 305 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSKC--G-KW 305 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC--B-CH
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHcC--C-CH
Confidence 67999999999999999987642 23334422 111111 11222222 2222 6889999999999982 2 55
Q ss_pred HHHHHHhc-CCC--c----hHHHHHHhhcccceeeecCCeEec-cHHHHHH
Q 003011 80 DYVTRIQD-DPD--F----VRYVLNVLVNKSLITISSYNKLEM-HDLLEEM 122 (857)
Q Consensus 80 ~~l~~~~~-~~g--~----~~~~l~~Li~rsLi~~~~~~~~~M-HDLl~dl 122 (857)
+.+..... ..| . ...+++.|+++++|... ++.|.+ |.++++.
T Consensus 306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLISLA 355 (357)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHHHh
Confidence 55553321 112 2 57899999999999876 466774 6777764
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=60.82 E-value=7.2 Score=42.17 Aligned_cols=100 Identities=15% Similarity=0.046 Sum_probs=59.3
Q ss_pred hHHHHHHhcC------CChHHHHHHHhh-h-----cCC---CHHHHHHHHHHHhhcCChhHHHHHHHhHhccCHHHHHHh
Q 003011 3 LSTRVVDYAK------GNPLALKVLGSF-F-----YGR---RKVDWENALHNLKRISDRDVYEVLKISYDELNWEEKNIF 67 (857)
Q Consensus 3 l~~~iv~~c~------GlPLAlkvlG~~-L-----~~k---~~~~W~~~l~~L~~~~~~~i~~~Lk~SYd~L~~~~K~cF 67 (857)
....|+++++ |.|..+..+... . .+. +.+.++.++..... ...+.-+++.||.++|.++
T Consensus 241 ~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l 314 (412)
T 1w5s_A 241 HLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIIL 314 (412)
T ss_dssp HHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHH
Confidence 4567889999 999755544432 2 122 34455555443210 2345557789999999999
Q ss_pred hhhhcCCC-C---CCHHHHHH----Hh-cCCC---c----hHHHHHHhhcccceeee
Q 003011 68 LDIACFFK-G---EDKDYVTR----IQ-DDPD---F----VRYVLNVLVNKSLITIS 108 (857)
Q Consensus 68 l~~a~Fp~-~---~~~~~l~~----~~-~~~g---~----~~~~l~~Li~rsLi~~~ 108 (857)
..+|.++. + .....+.. +- ...| . ...+++.|++.+||...
T Consensus 315 ~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 315 RLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 99998652 2 13333322 11 1112 2 56789999999999875
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=56.02 E-value=46 Score=35.14 Aligned_cols=100 Identities=15% Similarity=0.138 Sum_probs=64.7
Q ss_pred chHHHHHHhcC---CCh-HHHHHHHhhhc-----CC---CHHHHHHHHHHHhhcCChhHHHHHHHhHhccCHHHHHHhhh
Q 003011 2 VLSTRVVDYAK---GNP-LALKVLGSFFY-----GR---RKVDWENALHNLKRISDRDVYEVLKISYDELNWEEKNIFLD 69 (857)
Q Consensus 2 ~l~~~iv~~c~---GlP-LAlkvlG~~L~-----~k---~~~~W~~~l~~L~~~~~~~i~~~Lk~SYd~L~~~~K~cFl~ 69 (857)
+..+.++++++ |.| .|+.++..... ++ +.+.++.++..... +.+.-++.+|+.++|..++.
T Consensus 226 ~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~-------~~~~~~~~~l~~~~~~~l~a 298 (387)
T 2v1u_A 226 DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER-------DRVSEVVRTLPLHAKLVLLS 298 (387)
T ss_dssp SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh-------chHHHHHHcCCHHHHHHHHH
Confidence 35677888888 999 44444444331 22 67788888776532 34666789999999999988
Q ss_pred hhcCCCCCC---HHHH----HHHhcCCCc-------hHHHHHHhhcccceeee
Q 003011 70 IACFFKGED---KDYV----TRIQDDPDF-------VRYVLNVLVNKSLITIS 108 (857)
Q Consensus 70 ~a~Fp~~~~---~~~l----~~~~~~~g~-------~~~~l~~Li~rsLi~~~ 108 (857)
++...+|.+ ...+ ..+....|. ...+++.|...+++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 299 IMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 886655542 2222 222222222 66788888899988774
No 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.47 E-value=1e+02 Score=32.44 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=63.1
Q ss_pred hHHHHHHhcC---CChH-HHHHHHhhh--c----CCCHHHHHHHHHHHhhcCChhHHHHHHHhHhccCHHHHHHhhhhhc
Q 003011 3 LSTRVVDYAK---GNPL-ALKVLGSFF--Y----GRRKVDWENALHNLKRISDRDVYEVLKISYDELNWEEKNIFLDIAC 72 (857)
Q Consensus 3 l~~~iv~~c~---GlPL-AlkvlG~~L--~----~k~~~~W~~~l~~L~~~~~~~i~~~Lk~SYd~L~~~~K~cFl~~a~ 72 (857)
..+.++++++ |.|- |+.++-... . ..+.+.++.+++.... +.+.-+++.|+.++|..+.-++.
T Consensus 223 ~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 223 ILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHH
Confidence 4567888888 8887 544444433 1 2377888888887542 45667889999999988888887
Q ss_pred CCCCCCH-HHHHHHhcCCC---c----hHHHHHHhhcccceeee
Q 003011 73 FFKGEDK-DYVTRIQDDPD---F----VRYVLNVLVNKSLITIS 108 (857)
Q Consensus 73 Fp~~~~~-~~l~~~~~~~g---~----~~~~l~~Li~rsLi~~~ 108 (857)
.+.+.+. +....+-...| . ...+++.|.++++|...
T Consensus 296 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 296 SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2221111 12222222222 1 57888999999999874
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=30.08 E-value=68 Score=32.93 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=54.7
Q ss_pred hHHHHHHhcCCChHHHHHHHhhhc------CC---CHHHHHHHHHHHhhcCChhHHHHHHHhHhccCHHHHHHhhhhhcC
Q 003011 3 LSTRVVDYAKGNPLALKVLGSFFY------GR---RKVDWENALHNLKRISDRDVYEVLKISYDELNWEEKNIFLDIACF 73 (857)
Q Consensus 3 l~~~iv~~c~GlPLAlkvlG~~L~------~k---~~~~W~~~l~~L~~~~~~~i~~~Lk~SYd~L~~~~K~cFl~~a~F 73 (857)
....+++++.|.|-.+..+...+. +. +.+..+.++..+ ..++..|+..++..+...+..
T Consensus 192 ~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~------------~~~~~~l~~~e~~~i~~~~~~ 259 (324)
T 1hqc_A 192 AALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL------------GLDELGLEKRDREILEVLILR 259 (324)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh------------cccccCCCHHHHHHHHHHHHH
Confidence 456788889999987766654432 11 333444444332 234567888888888877765
Q ss_pred CCCC--CHHHHHHHhcCCCc----hHHHHHH-hhcccceeeecCCe
Q 003011 74 FKGE--DKDYVTRIQDDPDF----VRYVLNV-LVNKSLITISSYNK 112 (857)
Q Consensus 74 p~~~--~~~~l~~~~~~~g~----~~~~l~~-Li~rsLi~~~~~~~ 112 (857)
..|. ....+.+.+ |. ....++. +++.++|+....|+
T Consensus 260 ~~g~~~~~~~~a~~l---gi~~~tl~~~l~~~~i~~~li~~~~~g~ 302 (324)
T 1hqc_A 260 FGGGPVGLATLATAL---SEDPGTLEEVHEPYLIRQGLLKRTPRGR 302 (324)
T ss_dssp SCSSCCCHHHHHHHT---TSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred hcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHhcchhcCCccc
Confidence 5544 355554443 33 2333333 77778887664443
Done!