BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003012
(857 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0JRK4|CGLA_PSEVC Lambda-carrageenase OS=Pseudoalteromonas carrageenovora GN=cglA
PE=1 SV=1
Length = 942
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
Query: 523 GKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIY 582
G ++TT G VAA+ G+ +WE L + + D++GDG ++ GN+Y
Sbjct: 49 GGSSIITTSYEGTVAAYKFNGEKLWENELSGFMNHDIWVQDINGDGLVEIFAANADGNVY 108
Query: 583 VLSGKDGSKVRPYPYRTHGRVMNQVLLV-DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS 641
++ DGS + + + MN V ++ D K+ +V +D LY I
Sbjct: 109 CINS-DGS--LKWTFGLNEVPMNSVTVISDADKK-------YVVAGGYDKNLYYISTNGE 158
Query: 642 CADVVDIGETSYSMVLADNV 661
++ G S V D V
Sbjct: 159 LLKTIESGTYSEEGVFGDGV 178
>sp|Q05JY7|CGLA_PSEAS Lambda-carrageenase OS=Pseudoalteromonas sp. GN=cglA PE=1 SV=1
Length = 942
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 523 GKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIY 582
G ++TT G VAA+ G+ +WE L + + D++GDG ++ GN+Y
Sbjct: 49 GGSSIITTSYEGTVAAYKFNGEKLWENELSGFMNHDIWVQDINGDGLVEIFAANADGNVY 108
Query: 583 VLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642
++ DGS + + + MN V ++ + EK +V +D LY I
Sbjct: 109 CINS-DGS--LKWTFGLNEVPMNSVTVI--SDADEK----YVVAGGYDKNLYYISANGEL 159
Query: 643 ADVVDIGETSYSMVLADNV 661
++ S V D V
Sbjct: 160 LKTIESSAYSEEGVFGDGV 178
>sp|F1MMS9|ITA3_BOVIN Integrin alpha-3 OS=Bos taurus GN=ITGA3 PE=2 SV=1
Length = 1050
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 369 QHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIG 428
+ ++ + V ++ S +AD++NDG ++++ Y+F+ +
Sbjct: 292 RRRQVLEGTQVGAYFGSAIALADLNNDGWQDLLVGAPYYFERK----------------- 334
Query: 429 KYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSF- 487
+ V GAI +F ++ + L S A+ +S ++ D++ DG DI VG F
Sbjct: 335 EEVGGAIYIF-MNQAGTSFPDHPSLLLHGPSRSAFGFSVASIGDVNQDGFQDIAVGAPFE 393
Query: 488 GLFYVLDHHGKIR 500
GL V +HG R
Sbjct: 394 GLGKVYIYHGSSR 406
>sp|Q91687|ITA4_XENLA Integrin alpha-4 OS=Xenopus laevis GN=itga4 PE=2 SV=1
Length = 1032
Score = 41.2 bits (95), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 84/222 (37%), Gaps = 41/222 (18%)
Query: 430 YVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI-----YSSPTVVDLDGDGNLDILVG 484
Y G+I V+N +K DL+ + S+ Y + +P D+ G G
Sbjct: 220 YWTGSIFVYNTTENTIKSYVDLNNAVKFGSYLGYSVGAGHFRTPNGYDVIGGAPQQEQTG 279
Query: 485 TSFGLFYVLDHHGKIREKFPLEMAEIQG-AVVAADINDDGKIELV-------TTDTHGNV 536
+ Y + E ++ G AV AAD+N DG +L+ T G V
Sbjct: 280 RVYIFTYEEKQLTILFEAGGKKLGSYFGAAVCAADLNGDGLSDLLVGAPIQSTIREEGRV 339
Query: 537 AAWTAEGKGIWEQ----------HLKSLVTQGPSIGDVDGDGHSDVVVPT-----LSGNI 581
+ G G E+ + ++GD+D DG DV + L G +
Sbjct: 340 FVYMNTGSGAMEELKFELSGSDLYAARFGETIANLGDIDNDGFEDVAIAAPQEGDLEGAV 399
Query: 582 YVLSGKD------------GSKVRPYPYRTHGRVMNQVLLVD 611
Y+ +G++ GSK Y R G+ ++ VL +D
Sbjct: 400 YIYNGREKGITPSFSQRLQGSKF-GYGLRMFGQSLSNVLDID 440
>sp|A2ARA8|ITA8_MOUSE Integrin alpha-8 OS=Mus musculus GN=Itga8 PE=1 SV=1
Length = 1062
Score = 40.4 bits (93), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 381 SHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNL 440
S+ T V++D++NDG+ ++++ F + E+ NP +E+G + + Y+ + ++F
Sbjct: 318 SYFGYTVVVSDVNNDGMDDILVGAPLFMEREFESNP---REVGQVYL--YLQASALLFQ- 371
Query: 441 DTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKI 499
D + T +F + S + DL+ DG DI +G F D GK+
Sbjct: 372 ---------DPQVLTGTETFGRFGSSVAHLGDLNQDGYNDIAIGVPFA---GKDQRGKV 418
>sp|Q62470|ITA3_MOUSE Integrin alpha-3 OS=Mus musculus GN=Itga3 PE=1 SV=1
Length = 1053
Score = 40.0 bits (92), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 19/129 (14%)
Query: 369 QHEKIEDYVNVDSHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIG 428
Q +++ V ++ S +AD++NDG ++++ Y+F+ +
Sbjct: 294 QRKQVLKGTQVGAYFGSAIALADLNNDGWQDLLVGAPYYFERK----------------- 336
Query: 429 KYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSF- 487
+ V GA+ VF ++ + L S A+ S ++ D++ DG DI VG F
Sbjct: 337 EEVGGAVYVF-MNQAGASFPDQPSLLLHGPSRSAFGISIASIGDINQDGFQDIAVGAPFE 395
Query: 488 GLFYVLDHH 496
GL V +H
Sbjct: 396 GLGKVYIYH 404
>sp|O44386|ITA3_DROME Integrin alpha-PS3 OS=Drosophila melanogaster GN=scb PE=1 SV=2
Length = 1115
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 28/134 (20%)
Query: 488 GLFYVLDHHGKIREKFPLEMAEIQG-----AVVAADINDDGKIELVTT-------DTHGN 535
G Y+ D GK K+ + E G +V+A D+N DGK +++ + D+H N
Sbjct: 323 GEAYIFDVRGKSIHKYHVFRGEQFGEYFGYSVLAEDLNGDGKTDVIVSAPQHALEDSHDN 382
Query: 536 VAAWTAEGKGIW---EQHLKSLV-------TQGPSIGDVDGDGHSDVVV-PTLSGN---- 580
A + KG + Q L+S V T +GD++ DG++DV V +GN
Sbjct: 383 GAIYVFINKGFFNFERQILRSPVETMARFGTALSRLGDINHDGYNDVAVGAPFAGNGTVF 442
Query: 581 IYVLSGKDGSKVRP 594
IY L ++G + +P
Sbjct: 443 IY-LGSENGLRDQP 455
>sp|P34446|PAT2_CAEEL Integrin alpha pat-2 OS=Caenorhabditis elegans GN=pat-2 PE=1 SV=1
Length = 1226
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 35/198 (17%)
Query: 388 VIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKW 447
+AD++ DG ++I+ ++ D+ + + + D+GK V+ L T +
Sbjct: 308 AVADVNKDGRDDIIMGCPFYTDYGSVKDAKTQERKPQYDVGK------VIVMLQTAPGVF 361
Query: 448 TTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEM 507
+ + D+ R + ++ DL+ DG D++VG + GK +
Sbjct: 362 GKQIAVVGDDQWGR-FGHAVAAAGDLNLDGYNDVIVGAPYA--------GKNK------- 405
Query: 508 AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGD 567
QGAV + DG EL T EG I ++KS DVDG+
Sbjct: 406 ---QGAVYVIHGSKDGVRELPTQKI---------EGANIGHGNIKSFGFSLTGNEDVDGN 453
Query: 568 GHSDVVVPTL-SGNIYVL 584
G D+ V SGN VL
Sbjct: 454 GMPDIAVGAWKSGNAAVL 471
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 30/181 (16%)
Query: 422 LGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDI 481
+ G+ G + G +V++ K + TD ++ST + Y S V D++ DG DI
Sbjct: 265 VAGVPRGNDLHGKLVLYTSKLKMMINLTD-EVSTQHGQ---YCGGSVAVADVNKDGRDDI 320
Query: 482 LVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541
++G F Y K +E+ P D GK+ ++ G A
Sbjct: 321 IMGCPFYTDYGSVKDAKTQERKPQY--------------DVGKVIVMLQTAPGVFGKQIA 366
Query: 542 -EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVV------PTLSGNIYVLSG-KDGSKVR 593
G W + ++ + GD++ DG++DV+V G +YV+ G KDG +
Sbjct: 367 VVGDDQWGRFGHAVA----AAGDLNLDGYNDVIVGAPYAGKNKQGAVYVIHGSKDGVREL 422
Query: 594 P 594
P
Sbjct: 423 P 423
>sp|Q00651|ITA4_MOUSE Integrin alpha-4 OS=Mus musculus GN=Itga4 PE=1 SV=1
Length = 1039
Score = 37.0 bits (84), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 79/208 (37%), Gaps = 29/208 (13%)
Query: 430 YVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI-----YSSPTVVDLDGDGNLDILVG 484
Y G + V+N+ T Q K D S+ Y + SP ++ G +G
Sbjct: 227 YWTGTVFVYNITTNQYKAFVDRQNQVKFGSYLGYSVGAGHFRSPHTTEVVGGAPQHEQIG 286
Query: 485 TSFGLFYVLDHHGKIREKFPLEMAEIQGA-VVAADINDDGKIELV-------TTDTHGNV 536
++ + + E ++ GA V A D+N DG +L+ T G V
Sbjct: 287 KAYIFSIDENELNIVYEMKGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRV 346
Query: 537 AAWTAEGKGIWEQHLKSLVTQ--------GPSI---GDVDGDGHSDVVVPT-----LSGN 580
+ G G ++ ++ G SI GD+D DG D+ + L G
Sbjct: 347 FVYINSGMGAVMVEMERVLVGSDKYAARFGESIANLGDIDNDGFEDIAIGAPQEDDLRGA 406
Query: 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVL 608
+Y+ +G+ Y R G+ +++ L
Sbjct: 407 VYIYNGRVDGISSTYSQRIEGQQISKSL 434
>sp|A8X3A7|PAT2_CAEBR Integrin alpha pat-2 OS=Caenorhabditis briggsae GN=pat-2 PE=3 SV=2
Length = 1224
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 30/181 (16%)
Query: 422 LGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDI 481
+ G+ G + G +V++ K + TD ++ST + Y + V D++ DG DI
Sbjct: 267 VAGVPRGNDLHGKLVLYTSKLKMMINLTD-EVSTQHGQ---YCGGALAVADVNKDGRDDI 322
Query: 482 LVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541
++G F Y K +E+ P D GK+ + G A
Sbjct: 323 IMGCPFYTDYGSVKDAKTQERKPQY--------------DVGKVIVFLQTAPGVFGKQLA 368
Query: 542 -EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVV------PTLSGNIYVLSG-KDGSKVR 593
G W + SL + GD++ DG++DV+V G +YV+ G KDG + +
Sbjct: 369 VVGDDQWGRFGHSLA----AAGDLNLDGYNDVIVGAPYAGKNKQGAVYVIHGSKDGVREK 424
Query: 594 P 594
P
Sbjct: 425 P 425
>sp|P53708|ITA8_HUMAN Integrin alpha-8 OS=Homo sapiens GN=ITGA8 PE=1 SV=3
Length = 1063
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 381 SHILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNL 440
S+ T V++D+++DG+ ++++ F + E+ NP +E+G I + Y+ + ++F
Sbjct: 319 SYFGYTVVVSDVNSDGLDDVLVGAPLFMEREFESNP---REVGQIYL--YLQVSSLLFR- 372
Query: 441 DTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKI 499
D + T +F + + + DL+ DG DI +G F D GK+
Sbjct: 373 ---------DPQILTGTETFGRFGSAMAHLGDLNQDGYNDIAIGVPFA---GKDQRGKV 419
>sp|A8F223|IF2_RICM5 Translation initiation factor IF-2 OS=Rickettsia massiliae (strain
Mtu5) GN=infB PE=3 SV=1
Length = 831
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 201 ARMKSMLETKKSTPETNATVTTSTESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNES 260
A K+++E +KS+ + T++ + E N TV + + ++ N L + +E+ K+N+
Sbjct: 37 ANSKTLVEVRKSSTGSATTLSLNKERNSLDQTVIDANKEEFNRRLSILKKAAEQSKLNDP 96
Query: 261 HTEMNIKLPTSVDNSSTTTVS----------GGTNSSENGTNTGRRLLEDNNSKGSQEGN 310
+ S++ S+ + + N+ EN ++++D+ SQ
Sbjct: 97 SKISTLSKLASINQSANSRIEPLETDKEVEPKQQNTEENKVEVSAKIVQDDEDIPSQIPK 156
Query: 311 DKEDVPVAT----------AENDQALDENADSSF 334
KED+ V + E+++ LD+ AD
Sbjct: 157 KKEDIFVKSPLVGMRTRYGIESEKELDKTADRKI 190
>sp|Q332W9|ACCD_LACSA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta,
chloroplastic OS=Lactuca sativa GN=accD PE=3 SV=2
Length = 508
Score = 33.5 bits (75), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 13/149 (8%)
Query: 244 SLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNNS 303
SL + N SE + N + T+ NI+ DN S + G N + L++D+N
Sbjct: 27 SLGPIENASESKDPNRNDTDKNIQGWGGHDNYSNVDLFFGVKDIRNFFSDDTFLVKDSNG 86
Query: 304 KGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDEL---ADEYNYDYDDYVDDAMW 360
D E+ A ND +SSF +R++ +L + N D+D Y+DD +
Sbjct: 87 DSYSIYFDIENHIFEIA-NDHPFCSELESSF--YRNSSDLNNGSKSKNPDHDRYMDDTQY 143
Query: 361 GDEEWTEEQHEKIEDY----VNVDSHILS 385
W + I+ Y + +D++I+S
Sbjct: 144 ---TWNNHINSCIDSYLQYQICIDNYIVS 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,339,663
Number of Sequences: 539616
Number of extensions: 16173511
Number of successful extensions: 50607
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 610
Number of HSP's that attempted gapping in prelim test: 44163
Number of HSP's gapped (non-prelim): 5347
length of query: 857
length of database: 191,569,459
effective HSP length: 126
effective length of query: 731
effective length of database: 123,577,843
effective search space: 90335403233
effective search space used: 90335403233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)