Query 003012
Match_columns 857
No_of_seqs 427 out of 2175
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 15:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003012.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003012hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4649 PQQ (pyrrolo-quinoline 99.7 2.9E-15 6.3E-20 155.0 21.9 332 64-640 1-352 (354)
2 PRK11138 outer membrane biogen 99.7 2.7E-13 5.8E-18 154.0 38.3 210 433-683 170-393 (394)
3 TIGR03300 assembly_YfgL outer 99.6 3.6E-12 7.9E-17 143.5 35.0 209 433-682 155-377 (377)
4 cd00216 PQQ_DH Dehydrogenases 99.5 8.6E-11 1.9E-15 137.5 35.0 217 432-676 174-458 (488)
5 TIGR03300 assembly_YfgL outer 99.2 1.1E-08 2.4E-13 115.4 30.4 173 433-637 200-377 (377)
6 PRK11138 outer membrane biogen 99.2 8.3E-09 1.8E-13 117.4 27.5 215 433-697 130-363 (394)
7 KOG3637 Vitronectin receptor, 99.0 2.3E-08 5E-13 125.0 22.1 183 462-684 265-481 (1030)
8 cd00216 PQQ_DH Dehydrogenases 98.9 6.6E-07 1.4E-11 105.0 29.1 243 433-697 120-434 (488)
9 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.9 1.3E-06 2.8E-11 103.3 31.4 83 60-156 45-141 (527)
10 KOG3637 Vitronectin receptor, 98.9 1.3E-08 2.8E-13 127.2 13.1 178 384-586 268-480 (1030)
11 PF13360 PQQ_2: PQQ-like domai 98.7 3.1E-06 6.6E-11 88.4 23.3 222 433-685 3-231 (238)
12 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.4 2.3E-05 5E-10 92.9 22.4 198 433-644 79-338 (527)
13 TIGR03074 PQQ_membr_DH membran 98.4 0.00067 1.5E-08 83.5 33.7 88 60-156 162-281 (764)
14 PF13360 PQQ_2: PQQ-like domai 98.3 5.4E-05 1.2E-09 79.0 20.4 181 433-646 46-237 (238)
15 COG1520 FOG: WD40-like repeat 98.3 0.00041 8.9E-09 78.5 27.2 180 433-646 78-275 (370)
16 KOG4550 Predicted membrane pro 98.2 2.8E-05 6.1E-10 86.1 16.4 200 466-673 89-342 (606)
17 TIGR03074 PQQ_membr_DH membran 98.1 0.00024 5.1E-09 87.3 22.6 198 433-645 204-483 (764)
18 PF13517 VCBS: Repeat domain i 98.1 4.8E-06 1E-10 69.5 5.4 56 518-574 1-61 (61)
19 PF13517 VCBS: Repeat domain i 98.0 5.7E-06 1.2E-10 69.0 4.6 57 472-529 1-61 (61)
20 COG1520 FOG: WD40-like repeat 98.0 0.0015 3.3E-08 73.9 24.7 227 435-697 35-278 (370)
21 KOG4649 PQQ (pyrrolo-quinoline 97.9 0.00068 1.5E-08 71.7 18.0 173 433-640 33-208 (354)
22 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.00025 5.4E-09 66.5 12.1 106 466-581 3-108 (111)
23 KOG4550 Predicted membrane pro 97.7 0.00031 6.6E-09 78.1 12.9 199 468-673 38-272 (606)
24 PF14783 BBS2_Mid: Ciliary BBS 97.6 0.0012 2.6E-08 62.0 12.4 106 558-679 4-109 (111)
25 PF01839 FG-GAP: FG-GAP repeat 95.9 0.0063 1.4E-07 45.2 2.7 28 466-493 3-34 (34)
26 PF01839 FG-GAP: FG-GAP repeat 95.6 0.0092 2E-07 44.4 2.5 29 556-584 2-34 (34)
27 KOG0296 Angio-associated migra 95.0 4.4 9.6E-05 45.4 21.5 220 431-685 126-357 (399)
28 cd00200 WD40 WD40 domain, foun 94.8 5.2 0.00011 40.6 25.5 212 433-682 73-289 (289)
29 KOG0316 Conserved WD40 repeat- 94.7 3.2 6.9E-05 44.2 18.5 216 433-682 81-297 (307)
30 KOG2106 Uncharacterized conser 93.9 13 0.00029 43.4 22.8 222 433-684 222-477 (626)
31 cd00200 WD40 WD40 domain, foun 93.6 9.4 0.0002 38.7 25.3 214 433-684 31-249 (289)
32 COG4993 Gcd Glucose dehydrogen 93.3 2.5 5.4E-05 50.4 16.2 64 579-644 426-493 (773)
33 PTZ00420 coronin; Provisional 92.5 31 0.00068 41.8 28.8 205 468-685 77-294 (568)
34 KOG0266 WD40 repeat-containing 92.4 19 0.00041 42.3 22.4 201 467-685 161-365 (456)
35 KOG0266 WD40 repeat-containing 91.4 30 0.00065 40.6 22.6 160 468-641 249-411 (456)
36 PLN00181 protein SPA1-RELATED; 90.7 55 0.0012 41.2 27.9 221 432-682 554-791 (793)
37 PTZ00421 coronin; Provisional 90.6 44 0.00095 39.9 24.1 201 468-685 78-291 (493)
38 KOG0296 Angio-associated migra 90.3 14 0.00031 41.6 17.0 135 434-593 87-226 (399)
39 PF05567 Neisseria_PilC: Neiss 89.9 3.2 6.9E-05 46.8 12.2 94 382-498 146-241 (335)
40 KOG0316 Conserved WD40 repeat- 89.7 32 0.00069 36.9 19.9 176 486-683 79-256 (307)
41 PF14779 BBS1: Ciliary BBSome 89.5 13 0.00029 40.3 15.8 62 619-682 193-256 (257)
42 PLN00181 protein SPA1-RELATED; 89.3 64 0.0014 40.6 24.4 198 468-684 486-690 (793)
43 KOG0646 WD40 repeat protein [G 89.3 16 0.00035 42.2 16.9 194 474-685 90-308 (476)
44 KOG2055 WD40 repeat protein [G 89.2 16 0.00035 42.3 16.7 189 478-684 225-417 (514)
45 TIGR03866 PQQ_ABC_repeats PQQ- 89.2 32 0.00069 36.2 25.3 220 433-685 53-280 (300)
46 KOG0291 WD40-repeat-containing 88.5 72 0.0016 39.3 23.3 194 466-684 351-550 (893)
47 KOG0282 mRNA splicing factor [ 88.3 18 0.00039 42.1 16.4 93 431-541 278-371 (503)
48 KOG2048 WD40 repeat protein [G 87.7 53 0.0012 39.8 20.3 188 431-647 88-283 (691)
49 KOG1539 WD repeat protein [Gen 87.7 12 0.00025 46.2 15.1 104 480-594 174-282 (910)
50 KOG0318 WD40 repeat stress pro 85.7 84 0.0018 37.3 23.0 227 431-694 298-527 (603)
51 KOG2106 Uncharacterized conser 85.5 55 0.0012 38.6 18.3 136 526-683 382-520 (626)
52 PF13570 PQQ_3: PQQ-like domai 84.5 1.6 3.4E-05 33.2 4.0 38 443-495 1-38 (40)
53 KOG2048 WD40 repeat protein [G 84.4 37 0.00081 41.1 16.8 105 571-686 82-186 (691)
54 KOG0282 mRNA splicing factor [ 84.2 22 0.00047 41.4 14.4 184 482-686 231-417 (503)
55 COG4993 Gcd Glucose dehydrogen 84.0 78 0.0017 38.4 19.0 236 443-695 184-506 (773)
56 TIGR03866 PQQ_ABC_repeats PQQ- 83.0 65 0.0014 33.8 25.6 219 432-684 10-237 (300)
57 KOG2055 WD40 repeat protein [G 82.6 51 0.0011 38.4 16.4 158 523-694 224-383 (514)
58 PF13570 PQQ_3: PQQ-like domai 82.6 2.4 5.3E-05 32.1 4.4 38 63-106 2-39 (40)
59 PF05567 Neisseria_PilC: Neiss 82.4 27 0.00059 39.4 14.5 81 462-543 145-240 (335)
60 KOG0275 Conserved WD40 repeat- 82.1 32 0.00069 38.3 14.0 233 431-684 233-467 (508)
61 KOG2321 WD40 repeat protein [G 81.5 8.1 0.00018 45.7 9.9 105 570-685 146-259 (703)
62 KOG2321 WD40 repeat protein [G 80.8 39 0.00084 40.3 14.9 107 479-591 146-262 (703)
63 KOG0273 Beta-transducin family 80.7 1.2E+02 0.0027 35.5 19.4 198 467-685 237-441 (524)
64 KOG0301 Phospholipase A2-activ 78.8 48 0.001 40.3 15.1 184 466-684 102-288 (745)
65 PF01011 PQQ: PQQ enzyme repea 77.4 4.7 0.0001 30.3 4.4 22 431-452 8-29 (38)
66 PF01011 PQQ: PQQ enzyme repea 76.4 2.3 5E-05 32.0 2.5 35 91-127 3-37 (38)
67 KOG0283 WD40 repeat-containing 74.3 56 0.0012 40.3 14.4 148 526-685 424-577 (712)
68 KOG1446 Histone H3 (Lys4) meth 72.9 1.6E+02 0.0035 32.8 19.4 124 469-596 144-271 (311)
69 smart00191 Int_alpha Integrin 71.8 4.2 9.2E-05 33.6 3.2 30 466-495 7-44 (58)
70 smart00191 Int_alpha Integrin 66.9 6.3 0.00014 32.6 3.2 32 556-587 6-45 (58)
71 KOG0310 Conserved WD40 repeat- 66.2 2.3E+02 0.005 33.4 16.3 196 468-684 71-268 (487)
72 KOG4378 Nuclear protein COP1 [ 65.4 1.8E+02 0.0039 34.5 15.1 165 511-691 121-287 (673)
73 KOG0772 Uncharacterized conser 64.1 2E+02 0.0043 34.3 15.2 161 527-696 229-406 (641)
74 PTZ00420 coronin; Provisional 62.5 3.6E+02 0.0078 32.9 18.8 141 433-590 148-296 (568)
75 KOG0318 WD40 repeat stress pro 59.8 3.7E+02 0.0081 32.2 25.5 199 469-686 151-352 (603)
76 KOG0293 WD40 repeat-containing 59.6 3.4E+02 0.0073 31.6 21.0 263 386-685 247-514 (519)
77 PF14727 PHTB1_N: PTHB1 N-term 57.5 2.5E+02 0.0053 33.0 15.0 88 502-594 232-323 (418)
78 KOG0273 Beta-transducin family 56.7 4E+02 0.0086 31.5 21.2 222 428-682 293-521 (524)
79 smart00564 PQQ beta-propeller 55.1 16 0.00034 26.0 3.2 24 572-595 9-32 (33)
80 KOG0288 WD40 repeat protein Ti 54.3 1.5E+02 0.0034 34.2 12.1 193 466-685 220-418 (459)
81 KOG0271 Notchless-like WD40 re 52.3 4.3E+02 0.0093 30.6 18.5 226 431-685 177-440 (480)
82 KOG1517 Guanine nucleotide bin 52.1 4.6E+02 0.0099 34.2 16.4 187 488-686 1086-1289(1387)
83 COG2706 3-carboxymuconate cycl 51.8 4.1E+02 0.0089 30.2 22.0 72 468-542 147-221 (346)
84 KOG1274 WD40 repeat protein [G 51.3 6.3E+02 0.014 32.3 20.5 187 480-685 68-263 (933)
85 PF14779 BBS1: Ciliary BBSome 50.8 15 0.00032 39.9 3.5 38 132-169 191-228 (257)
86 KOG0268 Sof1-like rRNA process 49.8 2.2E+02 0.0047 32.6 12.2 100 571-685 201-303 (433)
87 PF10282 Lactonase: Lactonase, 49.7 4.2E+02 0.009 29.7 28.1 209 466-683 87-321 (345)
88 KOG0301 Phospholipase A2-activ 49.4 2.6E+02 0.0057 34.4 13.5 134 480-638 153-287 (745)
89 PF01835 A2M_N: MG2 domain; I 47.4 2.1E+02 0.0046 25.7 11.1 83 725-812 13-99 (99)
90 smart00564 PQQ beta-propeller 47.3 27 0.00058 24.7 3.4 23 481-503 9-32 (33)
91 KOG1539 WD repeat protein [Gen 46.4 7.2E+02 0.016 31.5 18.4 100 571-685 174-276 (910)
92 KOG0315 G-protein beta subunit 46.2 4.4E+02 0.0095 28.9 16.5 176 487-684 19-197 (311)
93 COG2706 3-carboxymuconate cycl 45.4 5.1E+02 0.011 29.5 24.7 102 435-546 68-180 (346)
94 KOG0278 Serine/threonine kinas 45.1 4.5E+02 0.0098 28.8 14.7 140 527-685 158-298 (334)
95 KOG1036 Mitotic spindle checkp 43.9 5.1E+02 0.011 29.1 17.5 101 569-685 25-125 (323)
96 PF14781 BBS2_N: Ciliary BBSom 43.0 3.5E+02 0.0075 26.8 11.8 115 469-586 2-124 (136)
97 COG3419 PilY1 Tfp pilus assemb 40.8 9.4E+02 0.02 31.4 17.0 160 521-685 579-791 (1036)
98 KOG1274 WD40 repeat protein [G 39.3 8.6E+02 0.019 31.1 16.0 102 571-685 68-169 (933)
99 KOG0271 Notchless-like WD40 re 37.3 7.2E+02 0.016 28.9 16.4 155 468-640 118-277 (480)
100 PTZ00421 coronin; Provisional 36.6 8.1E+02 0.018 29.3 22.2 120 513-643 77-202 (493)
101 PF08450 SGL: SMP-30/Gluconola 36.4 5.2E+02 0.011 27.0 16.2 127 433-577 115-245 (246)
102 PF12256 TcdB_toxin_midN: Inse 35.6 25 0.00055 35.7 2.3 20 384-403 24-43 (175)
103 TIGR03769 P_ac_wall_RPT actino 35.1 56 0.0012 25.5 3.6 32 772-814 8-39 (41)
104 KOG0281 Beta-TrCP (transducin 33.1 3.1E+02 0.0068 31.2 10.1 193 467-689 239-433 (499)
105 PF14727 PHTB1_N: PTHB1 N-term 33.0 7.8E+02 0.017 28.9 14.1 108 468-583 244-356 (418)
106 PF08553 VID27: VID27 cytoplas 32.9 6.4E+02 0.014 32.1 14.0 138 432-585 503-645 (794)
107 KOG1036 Mitotic spindle checkp 32.6 7.6E+02 0.016 27.8 16.8 175 479-682 26-205 (323)
108 KOG0275 Conserved WD40 repeat- 31.4 6.5E+02 0.014 28.4 12.1 197 468-685 216-424 (508)
109 KOG0772 Uncharacterized conser 30.9 6.6E+02 0.014 30.2 12.6 74 512-586 269-346 (641)
110 KOG0315 G-protein beta subunit 30.3 7.7E+02 0.017 27.1 21.7 196 468-683 86-287 (311)
111 PF12894 Apc4_WD40: Anaphase-p 30.2 51 0.0011 26.3 2.7 20 138-157 25-44 (47)
112 PF12256 TcdB_toxin_midN: Inse 30.1 86 0.0019 31.9 5.1 20 512-531 25-44 (175)
113 KOG1446 Histone H3 (Lys4) meth 30.0 8.3E+02 0.018 27.4 13.5 116 519-644 148-267 (311)
114 KOG0649 WD40 repeat protein [G 29.0 4.7E+02 0.01 28.6 10.2 142 481-641 25-188 (325)
115 KOG1587 Cytoplasmic dynein int 27.5 1.2E+03 0.026 28.5 19.2 211 513-735 244-473 (555)
116 KOG0276 Vesicle coat complex C 27.0 1.3E+03 0.028 28.6 22.6 266 433-731 35-315 (794)
117 smart00108 B_lectin Bulb-type 26.2 1.8E+02 0.0039 27.1 6.2 50 486-549 62-111 (114)
118 KOG0283 WD40 repeat-containing 25.9 1.4E+03 0.03 28.7 14.8 139 480-638 424-575 (712)
119 KOG1445 Tumor-specific antigen 25.8 9.3E+02 0.02 29.8 12.8 30 661-691 728-757 (1012)
120 KOG1034 Transcriptional repres 24.8 1.1E+03 0.023 27.0 13.5 109 568-686 104-213 (385)
121 PF15418 DUF4625: Domain of un 24.0 4.8E+02 0.01 25.6 8.8 82 725-811 34-128 (132)
122 cd00028 B_lectin Bulb-type man 23.7 2.1E+02 0.0046 26.7 6.2 50 486-549 63-112 (116)
123 KOG0288 WD40 repeat protein Ti 20.7 1.4E+03 0.03 26.8 13.2 142 526-680 314-457 (459)
No 1
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.69 E-value=2.9e-15 Score=155.04 Aligned_cols=332 Identities=18% Similarity=0.292 Sum_probs=222.5
Q ss_pred eeEEeecCceeecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCCceeecceeeeeCCCCceEEEEEe
Q 003012 64 LRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPLLYDIDKDGVREIALAT 143 (857)
Q Consensus 64 l~w~~~~~ssv~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~~~~sp~~~d~~~dg~~~~~~~~ 143 (857)
+||..++++||.|+||++= .|-|..+++.||+|-+.+++-.+|... |.++.+.++++||++. +| .|+|+|
T Consensus 1 ~rW~vd~~kCVDaspLVV~--~dskT~v~igSHs~~~~avd~~sG~~~--We~ilg~RiE~sa~vv---gd---fVV~GC 70 (354)
T KOG4649|consen 1 MRWAVDLRKCVDASPLVVC--NDSKTLVVIGSHSGIVIAVDPQSGNLI--WEAILGVRIECSAIVV---GD---FVVLGC 70 (354)
T ss_pred CceeccchhhccCCcEEEe--cCCceEEEEecCCceEEEecCCCCcEE--eehhhCceeeeeeEEE---CC---EEEEEE
Confidence 5899999999999999982 245999999999999999999999999 9999999999999996 43 489999
Q ss_pred eceeEEEEee-cCccccceeeecceeeeccccccCCCCCCCCCCCCCCcchhhhhhhhhhhcccccccCCCCcccccccc
Q 003012 144 YNGEVLFFRV-SGYMMTDKLEIPRRKVRKDWYVGLHSDPVDRSHPDVHDDLIVQESEAARMKSMLETKKSTPETNATVTT 222 (857)
Q Consensus 144 ~~g~~~~~~~-~g~~~~~~~~vp~~~v~k~w~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (857)
|+|.+||++. +|+ +-|.. ...+.+|....+.+
T Consensus 71 y~g~lYfl~~~tGs--------------~~w~f--------------~~~~~vk~~a~~d~------------------- 103 (354)
T KOG4649|consen 71 YSGGLYFLCVKTGS--------------QIWNF--------------VILETVKVRAQCDF------------------- 103 (354)
T ss_pred ccCcEEEEEecchh--------------heeee--------------eehhhhccceEEcC-------------------
Confidence 9999999998 788 78886 33344444311111
Q ss_pred ccCCCCCCCccCCCcccccccccccCCCCcccccccccccccccccCCccCCCCcccccCCCCCCCCCCcccccccccCC
Q 003012 223 STESNPAPATVSNPDVKKVNESLVNVSNPSEERKVNESHTEMNIKLPTSVDNSSTTTVSGGTNSSENGTNTGRRLLEDNN 302 (857)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (857)
T Consensus 104 -------------------------------------------------------------------------------- 103 (354)
T KOG4649|consen 104 -------------------------------------------------------------------------------- 103 (354)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCccccccCcccccccccCccccccCccccccccccccccccCCCCCCcccccccccccccceeecccc
Q 003012 303 SKGSQEGNDKEDVPVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSH 382 (857)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~wg~~~W~~~~~~~~~~~i~vd~~ 382 (857)
+.++.|-|+| +...|++|.+...+.|.. .+...
T Consensus 104 ~~glIycgsh--------------------------------d~~~yalD~~~~~cVyks---------------kcgG~ 136 (354)
T KOG4649|consen 104 DGGLIYCGSH--------------------------------DGNFYALDPKTYGCVYKS---------------KCGGG 136 (354)
T ss_pred CCceEEEecC--------------------------------CCcEEEecccccceEEec---------------ccCCc
Confidence 1256676676 456789999998999876 78888
Q ss_pred cccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCC--ceEEEEeccCCCCcccc
Q 003012 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTK--QVKWTTDLDLSTDNASF 460 (857)
Q Consensus 383 i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG--~i~W~~~l~ls~~~~~~ 460 (857)
++++|+++- ||| -|.++. .+|.+.+.+.+++ ...|.....
T Consensus 137 ~f~sP~i~~--g~~--sly~a~--------------------------t~G~vlavt~~~~~~~~~w~~~~~-------- 178 (354)
T KOG4649|consen 137 TFVSPVIAP--GDG--SLYAAI--------------------------TAGAVLAVTKNPYSSTEFWAATRF-------- 178 (354)
T ss_pred eeccceecC--CCc--eEEEEe--------------------------ccceEEEEccCCCCcceehhhhcC--------
Confidence 999999983 233 344432 2377888888877 677876553
Q ss_pred ccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEe
Q 003012 461 RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT 540 (857)
Q Consensus 461 ~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~ 540 (857)
++++++|...- .-+.+++.+|.+..++..|+.+|++... |.++..|..-- ..-+.++...++-+++..
T Consensus 179 -~PiF~splcv~------~sv~i~~VdG~l~~f~~sG~qvwr~~t~-GpIf~~Pc~s~----Ps~q~i~~~~~~Cf~~~~ 246 (354)
T KOG4649|consen 179 -GPIFASPLCVG------SSVIITTVDGVLTSFDESGRQVWRPATK-GPIFMEPCESR----PSCQQISLENENCFCAPL 246 (354)
T ss_pred -CccccCceecc------ceEEEEEeccEEEEEcCCCcEEEeecCC-CceecccccCC----CcceEEEEecCCeEEEec
Confidence 56778877664 6788888999999999999999965444 55554433210 111333333344444433
Q ss_pred c-CCCeeEEEccccc--cc--cCCEEEecCCC-Cccc--EEEEecCCcEEEE---------ECCCCCeecccccccCCcc
Q 003012 541 A-EGKGIWEQHLKSL--VT--QGPSIGDVDGD-GHSD--VVVPTLSGNIYVL---------SGKDGSKVRPYPYRTHGRV 603 (857)
Q Consensus 541 ~-~G~~~W~~~~~~~--~~--~~vavgDlDGD-G~~D--Lvv~t~~G~I~~l---------~~~~G~~~~~~~~~~~g~~ 603 (857)
+ .|..+|..+.+.. .. ..+.+ |+-.= +..+ +-..+.+|+++.+ ...+|+...-......+.+
T Consensus 247 p~~ghL~w~~~~g~t~~vy~~p~l~F-~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eI 325 (354)
T KOG4649|consen 247 PIAGHLLWATQSGTTLHVYLSPKLRF-DLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEI 325 (354)
T ss_pred cccceEEEEecCCcEEEEEeCcccce-eccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCccc
Confidence 3 7888898765421 11 11111 11111 1112 2223345666666 3334544333334445566
Q ss_pred ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC
Q 003012 604 MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT 640 (857)
Q Consensus 604 ~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~ 640 (857)
.+++.+.| | .|+++..|.++++++-.+
T Consensus 326 FsSPvii~--------g--rl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 326 FSSPVIID--------G--RLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred ccCCeEEc--------c--EEEEEEccCeEEEEeccc
Confidence 56655553 1 389999999999988543
No 2
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.67 E-value=2.7e-13 Score=154.01 Aligned_cols=210 Identities=19% Similarity=0.311 Sum_probs=143.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecc---
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA--- 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g--- 508 (857)
+.++++|.++|+++|+...... .......++|++.+ | -++++..+|.+++++ .+|+.+|.++....
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~----~~~~~~~~sP~v~~----~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~ 239 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVP----SLTLRGESAPATAF----G--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGA 239 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCC----cccccCCCCCEEEC----C--EEEEEcCCCEEEEEEccCChhhheeccccCCCc
Confidence 6799999999999999876421 11112235677653 2 377888889999988 68999997765321
Q ss_pred -------ceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCc
Q 003012 509 -------EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (857)
Q Consensus 509 -------~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~ 580 (857)
.+...|++.| | .+++++.+|.+++++. +|+.+|+...... ..+.+. + .-|++++.+|.
T Consensus 240 ~~~~~~~~~~~sP~v~~----~--~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~~~----~--~~vy~~~~~g~ 305 (394)
T PRK11138 240 TEIDRLVDVDTTPVVVG----G--VVYALAYNGNLVALDLRSGQIVWKREYGSV--NDFAVD----G--GRIYLVDQNDR 305 (394)
T ss_pred cchhcccccCCCcEEEC----C--EEEEEEcCCeEEEEECCCCCEEEeecCCCc--cCcEEE----C--CEEEEEcCCCe
Confidence 1223455432 2 4777788899999986 8999999765432 123332 1 14888888999
Q ss_pred EEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE-EeCC-cceeeEEE
Q 003012 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV-DIGE-TSYSMVLA 658 (857)
Q Consensus 581 I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i-~~g~-~~~s~~~a 658 (857)
+++++..+|+.+|..+........ .+++.+ --|++++.+|.+|+++..+|...|. .+.. ...+.+++
T Consensus 306 l~ald~~tG~~~W~~~~~~~~~~~-sp~v~~----------g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~ 374 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLLHRLLT-APVLYN----------GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV 374 (394)
T ss_pred EEEEECCCCcEEEcccccCCCccc-CCEEEC----------CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE
Confidence 999999999999876543222233 334432 1378899999999999998887763 3432 34555665
Q ss_pred EeecCCCCccEEEEecCCcEEEEeC
Q 003012 659 DNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 659 ~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
. +| .|++++.+|.||+++.
T Consensus 375 ~----~~--~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 A----DD--KLLIQARDGTVYAITR 393 (394)
T ss_pred E----CC--EEEEEeCCceEEEEeC
Confidence 4 22 5999999999999874
No 3
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.59 E-value=3.6e-12 Score=143.51 Aligned_cols=209 Identities=22% Similarity=0.367 Sum_probs=140.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecc---
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA--- 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g--- 508 (857)
+.++++|..+|+..|+...... .......++|.+.+ | .++++..+|.+++++ .+|+.+|.......
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~----~~~~~~~~sp~~~~----~--~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTP----ALTLRGSASPVIAD----G--GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCC----ceeecCCCCCEEEC----C--EEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 6799999999999999865321 11111234566653 2 467777788999999 59999987654321
Q ss_pred -------ceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCc
Q 003012 509 -------EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (857)
Q Consensus 509 -------~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~ 580 (857)
...+.+.+. ++ -+++.+.+|.+++++. +|+..|...... ...+.+.+ + -|++++.+|.
T Consensus 225 ~~~~~~~~~~~~p~~~----~~--~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--~~~p~~~~----~--~vyv~~~~G~ 290 (377)
T TIGR03300 225 TELERLVDVDGDPVVD----GG--QVYAVSYQGRVAALDLRSGRVLWKRDASS--YQGPAVDD----N--RLYVTDADGV 290 (377)
T ss_pred CchhhhhccCCccEEE----CC--EEEEEEcCCEEEEEECCCCcEEEeeccCC--ccCceEeC----C--EEEEECCCCe
Confidence 012234332 22 4777788899999986 899999876432 22333321 2 4788888999
Q ss_pred EEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCc-ceeeEEE
Q 003012 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGET-SYSMVLA 658 (857)
Q Consensus 581 I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~-~~s~~~a 658 (857)
+++++..+|+.+|.+... .+...+.+.+.+ -.|++++.+|.+|+++..+|...| ..++.. ..+.+++
T Consensus 291 l~~~d~~tG~~~W~~~~~-~~~~~ssp~i~g----------~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~ 359 (377)
T TIGR03300 291 VVALDRRSGSELWKNDEL-KYRQLTAPAVVG----------GYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV 359 (377)
T ss_pred EEEEECCCCcEEEccccc-cCCccccCEEEC----------CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE
Confidence 999999999999876322 222333333321 147888999999999988887776 344443 4556666
Q ss_pred EeecCCCCccEEEEecCCcEEEEe
Q 003012 659 DNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 659 ~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
.| ..|++++.+|.||+|.
T Consensus 360 ~~------~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 360 VG------DGLLVQTRDGDLYAFR 377 (377)
T ss_pred EC------CEEEEEeCCceEEEeC
Confidence 52 2499999999999984
No 4
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.47 E-value=8.6e-11 Score=137.51 Aligned_cols=217 Identities=19% Similarity=0.159 Sum_probs=131.1
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccc-------------cccccccEEEecCCCCCccEEEEeeCC----------
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFR-------------AYIYSSPTVVDLDGDGNLDILVGTSFG---------- 488 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~-------------~~~~sspavaDlDGDG~~DIvVg~~~G---------- 488 (857)
.|.+++||..||+.+|+..+..... ...+ ...+++|++ |..+ .-|++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~pa~-d~~~---g~V~vg~~~g~~~~~~~~~~ 248 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDP-NAFPTWGPDRQMWGPGGGTSWASPTY-DPKT---NLVYVGTGNGSPWNWGGRRT 248 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCc-CCCCCCCCCcceecCCCCCccCCeeE-eCCC---CEEEEECCCCCCCccCCccC
Confidence 3779999999999999987632110 0000 112233332 2111 1255665443
Q ss_pred --------eEEEEe-CCCceeeeeeeecc-----ceeceeEEEe---ecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEc
Q 003012 489 --------LFYVLD-HHGKIREKFPLEMA-----EIQGAVVAAD---INDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH 550 (857)
Q Consensus 489 --------~Lyv~~-~dG~~~~~~~~~~g-----~i~ss~~vaD---~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~ 550 (857)
.|++++ .+|+.+|.++.... ...+.+.+.+ +++....-++++..+|.+++++. +|+.+|+..
T Consensus 249 ~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 249 PGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 699999 69999998765421 1233455555 44554445677778899999987 999999976
Q ss_pred cccccccCCEEEecCCCCcccEEE------------------EecCCcEEEEECCCCCeecccccccC-------Cc-cc
Q 003012 551 LKSLVTQGPSIGDVDGDGHSDVVV------------------PTLSGNIYVLSGKDGSKVRPYPYRTH-------GR-VM 604 (857)
Q Consensus 551 ~~~~~~~~vavgDlDGDG~~DLvv------------------~t~~G~I~~l~~~~G~~~~~~~~~~~-------g~-~~ 604 (857)
.... .++..+ + -+++ ...+|.+++++..+|+.+|..+.... +. ..
T Consensus 329 ~~~~---~~~~~~----~--~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~ 399 (488)
T cd00216 329 EVEQ---PMAYDP----G--LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWG 399 (488)
T ss_pred eecc---ccccCC----c--eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccC
Confidence 5311 001000 1 1222 22468999999999999998765411 11 12
Q ss_pred cceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCccEEEEecCC
Q 003012 605 NQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIVTTMNG 676 (857)
Q Consensus 605 s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G 676 (857)
.++++.+ --|++++.+|.+|+++..+|...| ..++....+.|++... +| .+++++++|
T Consensus 400 ~~~~~~g----------~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~--~g--~~yv~~~~g 458 (488)
T cd00216 400 GSLATAG----------NLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEV--NG--KQYVGVMVG 458 (488)
T ss_pred cceEecC----------CeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEe--CC--EEEEEEEec
Confidence 2333221 237888899999999999998887 4566666666654322 33 356655544
No 5
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=1.1e-08 Score=115.38 Aligned_cols=173 Identities=24% Similarity=0.335 Sum_probs=115.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccc--cccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFR--AYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~--~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
+.++++|..+|+.+|+..+.......... ....++|.+.+ .-+++.+.+|.+++++ .+|+..|..+.. .
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~------~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~ 271 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG------GQVYAVSYQGRVAALDLRSGRVLWKRDAS--S 271 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC------CEEEEEEcCCEEEEEECCCCcEEEeeccC--C
Confidence 67999999999999987653221110000 01234455542 2467777789999999 599999877632 1
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEc-cccccccCCEEEecCCCCcccEEEEecCCcEEEEECC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH-LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~-~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~ 587 (857)
...+++.+ | -|++++.+|.+++++. +|+.+|+.. .......++.+.+ + -|++++.+|.+++++..
T Consensus 272 -~~~p~~~~----~--~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g----~--~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 272 -YQGPAVDD----N--RLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVG----G--YLVVGDFEGYLHWLSRE 338 (377)
T ss_pred -ccCceEeC----C--EEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEEC----C--EEEEEeCCCEEEEEECC
Confidence 23344321 2 4777888899999987 899999873 3333334445431 1 47888889999999999
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
+|+.+|.++.... .+...+++.+ -.|++++.+|.||++.
T Consensus 339 tG~~~~~~~~~~~-~~~~sp~~~~----------~~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 339 DGSFVARLKTDGS-GIASPPVVVG----------DGLLVQTRDGDLYAFR 377 (377)
T ss_pred CCCEEEEEEcCCC-ccccCCEEEC----------CEEEEEeCCceEEEeC
Confidence 9999987665332 3445555553 1389999999999873
No 6
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.18 E-value=8.3e-09 Score=117.38 Aligned_cols=215 Identities=20% Similarity=0.258 Sum_probs=146.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc--
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE-- 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~-- 509 (857)
|.+++||.++|+++|+..+. ....++|++.| .-+++++.+|.|++++ .+|+.+|.++.....
T Consensus 130 g~l~ald~~tG~~~W~~~~~---------~~~~ssP~v~~------~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 194 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVA---------GEALSRPVVSD------GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT 194 (394)
T ss_pred CEEEEEECCCCCCcccccCC---------CceecCCEEEC------CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc
Confidence 67999999999999998763 33457787764 2367777788999999 599999987654211
Q ss_pred --eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccc-----------cccCCEEEecCCCCcccEEEE
Q 003012 510 --IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL-----------VTQGPSIGDVDGDGHSDVVVP 575 (857)
Q Consensus 510 --i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~-----------~~~~vavgDlDGDG~~DLvv~ 575 (857)
...++++.+ | -++++..+|.+++++. +|+.+|+...... +...+.+.| | .|+++
T Consensus 195 ~~~~~sP~v~~----~--~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~----~--~vy~~ 262 (394)
T PRK11138 195 LRGESAPATAF----G--GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG----G--VVYAL 262 (394)
T ss_pred ccCCCCCEEEC----C--EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC----C--EEEEE
Confidence 123455432 2 3777888899999976 8999998754321 123344431 2 37777
Q ss_pred ecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEE--eCCcce
Q 003012 576 TLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVD--IGETSY 653 (857)
Q Consensus 576 t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~--~g~~~~ 653 (857)
+.+|.+++++..+|+.+|..+... .. .+.+. + -.|++.+.+|.+++++..+|...|.. ......
T Consensus 263 ~~~g~l~ald~~tG~~~W~~~~~~---~~-~~~~~--~--------~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 328 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVWKREYGS---VN-DFAVD--G--------GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL 328 (394)
T ss_pred EcCCeEEEEECCCCCEEEeecCCC---cc-CcEEE--C--------CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc
Confidence 889999999999999998755321 11 12221 1 24888889999999999998887742 223334
Q ss_pred eeEEEEeecCCCCccEEEEecCCcEEEEeCCCCCCCcccceecc
Q 003012 654 SMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSIN 697 (857)
Q Consensus 654 s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~~~pl~~W~s~~ 697 (857)
+++++. +| -|++++.+|.+++++..+ ....|....
T Consensus 329 ~sp~v~----~g--~l~v~~~~G~l~~ld~~t---G~~~~~~~~ 363 (394)
T PRK11138 329 TAPVLY----NG--YLVVGDSEGYLHWINRED---GRFVAQQKV 363 (394)
T ss_pred cCCEEE----CC--EEEEEeCCCEEEEEECCC---CCEEEEEEc
Confidence 455554 23 378889999999998743 234565443
No 7
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=98.99 E-value=2.3e-08 Score=124.96 Aligned_cols=183 Identities=25% Similarity=0.426 Sum_probs=117.3
Q ss_pred cccccccEEEecCCCCCccEEEEee-----CCeEEEEeCCCceeeeee-ee---ccc-eeceeEEEeecCCCCeEEEEEe
Q 003012 462 AYIYSSPTVVDLDGDGNLDILVGTS-----FGLFYVLDHHGKIREKFP-LE---MAE-IQGAVVAADINDDGKIELVTTD 531 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~DIvVg~~-----~G~Lyv~~~dG~~~~~~~-~~---~g~-i~ss~~vaD~DGDG~~DLvv~~ 531 (857)
.|..-+.+++++++++..+++.|.. .|.+++++..++...... +. +|+ ...+++++|+|+||..||+|+.
T Consensus 265 sYLGYsV~~g~f~~~~~~~~VaGAPr~~~~~G~v~if~~~~~~~~~~~~~~GeQ~GSYFG~sl~~vDlNgDG~tDLLVGA 344 (1030)
T KOG3637|consen 265 SYLGYSVAVGVFSGPGTISFVAGAPRYNHTGGKVYIFQLSGKSLRPLQVLRGEQIGSYFGYSLAAVDLNGDGLTDLLVGA 344 (1030)
T ss_pred ceeeEEEEeeeccCCCceEEEecCccccCcccEEEEEeccccccceeeeeeeeeehhhcCeeEEEEEcCCCCCcceEEec
Confidence 4555567889999988877777753 368899987665221111 11 122 4467999999999999999985
Q ss_pred C---------CCcEEEEecCCCeeEEEcc-----c---cccccC-CEEEecCCCCcccEEEEec---C--CcEEEEECCC
Q 003012 532 T---------HGNVAAWTAEGKGIWEQHL-----K---SLVTQG-PSIGDVDGDGHSDVVVPTL---S--GNIYVLSGKD 588 (857)
Q Consensus 532 ~---------~G~l~~~~~~G~~~W~~~~-----~---~~~~~~-vavgDlDGDG~~DLvv~t~---~--G~I~~l~~~~ 588 (857)
. .|.||+|.+.|...|.... . +..+.+ ..++|+|+||..||+|+.. + |.||+|.+..
T Consensus 345 P~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG~Ala~LGDlN~DG~nDVAVGAP~eg~~~GaVYIy~Gs~ 424 (1030)
T KOG3637|consen 345 PLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFGSALAALGDLNQDGYNDVAVGAPFEGDNQGAVYIYHGSK 424 (1030)
T ss_pred CccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchhhhhhcccCcccCCCCceEEeCCcCCCCCceEEEEcCCC
Confidence 3 3789999887766554332 1 122223 3568999999999999974 3 8899998765
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
+.+......+..+. .+- . + + . ...++.---.|+||||.+|
T Consensus 425 ~Gl~~~PSQ~I~g~--------~~~-----~-----------~-l----------~-----~FG~SLsG~~DlDgNgypD 464 (1030)
T KOG3637|consen 425 GGLRSKPSQRIEGS--------SLG-----P-----------G-L----------Q-----YFGQSLSGGSDLDGNGYPD 464 (1030)
T ss_pred CCCCCCCceEEecc--------ccC-----C-----------c-c----------c-----ccccccccCccCCCCCCcc
Confidence 53322211111110 000 0 0 0 0 0123333345999999999
Q ss_pred EEEEec-CCcEEEEeCC
Q 003012 669 LIVTTM-NGNVFCFSTP 684 (857)
Q Consensus 669 Lvv~t~-~G~V~~~~~~ 684 (857)
|+|++. .+.+++|+..
T Consensus 465 laVGA~~s~~vvllrsR 481 (1030)
T KOG3637|consen 465 LAVGAFGSGQVVLLRAR 481 (1030)
T ss_pred EEeccCCCCcEEEEEcc
Confidence 999986 6788888863
No 8
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.91 E-value=6.6e-07 Score=105.02 Aligned_cols=243 Identities=18% Similarity=0.226 Sum_probs=138.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee---------CCeEEEEe-CCCceeee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS---------FGLFYVLD-HHGKIREK 502 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~---------~G~Lyv~~-~dG~~~~~ 502 (857)
+.|+++|.++|+++|+..+.... .....+.++|++.+ | -+++++. .|.|++++ .+|+.+|.
T Consensus 120 g~v~AlD~~TG~~~W~~~~~~~~---~~~~~i~ssP~v~~----~--~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNNDQV---PPGYTMTGAPTIVK----K--LVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEEECCCCCEeeeecCCCCc---CcceEecCCCEEEC----C--EEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 77999999999999998764211 00011346777775 1 2445542 46899999 58999998
Q ss_pred eeeecc--------------------ceeceeEEEeecCCCCeEEEEEeCCC------------------cEEEEec-CC
Q 003012 503 FPLEMA--------------------EIQGAVVAADINDDGKIELVTTDTHG------------------NVAAWTA-EG 543 (857)
Q Consensus 503 ~~~~~g--------------------~i~ss~~vaD~DGDG~~DLvv~~~~G------------------~l~~~~~-~G 543 (857)
++.... .+.+++ +.|..+ | -|+++..++ .+++++. +|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~p-a~d~~~-g--~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASP-TYDPKT-N--LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCe-eEeCCC-C--EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 766311 011122 222111 1 255554333 6899986 89
Q ss_pred CeeEEEccccc------cccCCEEEe---cCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccc-eEEEecc
Q 003012 544 KGIWEQHLKSL------VTQGPSIGD---VDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQ-VLLVDLT 613 (857)
Q Consensus 544 ~~~W~~~~~~~------~~~~vavgD---lDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~-~~v~DlD 613 (857)
+..|..+.... ....+.+.+ ++|....=+++++.+|.+++++..+|+.+|.++....+....+ .++....
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~ 346 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAF 346 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccc
Confidence 99999764321 223445554 4555444466777899999999999999998654311111111 1111100
Q ss_pred CC--CCCCCCeEEEEEecCCeEEEEcCCCCceEEE-EeC---------Cccee-eEEEEeecCCCCccEEEEecCCcEEE
Q 003012 614 KR--GEKSKGLTIVTTSFDGYLYLIDGPTSCADVV-DIG---------ETSYS-MVLADNVDGGDDLDLIVTTMNGNVFC 680 (857)
Q Consensus 614 gD--g~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i-~~g---------~~~~s-~~~a~DlDGDG~~DLvv~t~~G~V~~ 680 (857)
.. +..+....++....+|.+++++..+|...|. ..+ ..... .+++. + .-|++++.+|.+++
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~---g---~~v~~g~~dG~l~a 420 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA---G---NLVFAGAADGYFRA 420 (488)
T ss_pred cccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec---C---CeEEEECCCCeEEE
Confidence 00 0000000011123468999999999988884 333 11122 23332 1 23777789999999
Q ss_pred EeCCCCCCCcccceecc
Q 003012 681 FSTPAPHHPLKAWRSIN 697 (857)
Q Consensus 681 ~~~~~~~~pl~~W~s~~ 697 (857)
++..+ ....|....
T Consensus 421 ld~~t---G~~lW~~~~ 434 (488)
T cd00216 421 FDATT---GKELWKFRT 434 (488)
T ss_pred EECCC---CceeeEEEC
Confidence 99744 446676543
No 9
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.90 E-value=1.3e-06 Score=103.35 Aligned_cols=83 Identities=22% Similarity=0.444 Sum_probs=64.1
Q ss_pred CCcceeEEeecCc--eeecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCC--ce---------eecc
Q 003012 60 KNLELRWQTEVSS--SIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQS--SV---------HSSP 126 (857)
Q Consensus 60 ~~~~l~w~~~~~s--sv~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~--~~---------~~sp 126 (857)
.+|++.|+.++++ .+.+||+|++ | -|+|.+...+|.+|+-.+|+.+ |-+-... .+ ..+|
T Consensus 45 ~~L~~~W~~~~g~~~g~~stPvv~~----g--~vyv~s~~g~v~AlDa~TGk~l--W~~~~~~~~~~~~~~~~~~~~rg~ 116 (527)
T TIGR03075 45 KKLQPAWTFSLGKLRGQESQPLVVD----G--VMYVTTSYSRVYALDAKTGKEL--WKYDPKLPDDVIPVMCCDVVNRGV 116 (527)
T ss_pred ccceEEEEEECCCCCCcccCCEEEC----C--EEEEECCCCcEEEEECCCCcee--eEecCCCCcccccccccccccccc
Confidence 5799999999986 3789999983 4 5677788889999999999988 8764432 12 2234
Q ss_pred eeeeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 127 LLYDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 127 ~~~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
.++ ++ .|+++|.+|.|+.++. +|+
T Consensus 117 av~----~~--~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 117 ALY----DG--KVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred eEE----CC--EEEEEcCCCEEEEEECCCCC
Confidence 444 23 4899999999999998 899
No 10
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=98.86 E-value=1.3e-08 Score=127.16 Aligned_cols=178 Identities=24% Similarity=0.330 Sum_probs=118.5
Q ss_pred ccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCccccccc
Q 003012 384 LSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAY 463 (857)
Q Consensus 384 ~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~ 463 (857)
-.+.+++++++++..++|.++.-+. ...|.++.|+..+. .|..... ..++.+..|
T Consensus 268 GYsV~~g~f~~~~~~~~VaGAPr~~---------------------~~~G~v~if~~~~~--~~~~~~~--~~GeQ~GSY 322 (1030)
T KOG3637|consen 268 GYSVAVGVFSGPGTISFVAGAPRYN---------------------HTGGKVYIFQLSGK--SLRPLQV--LRGEQIGSY 322 (1030)
T ss_pred eEEEEeeeccCCCceEEEecCcccc---------------------CcccEEEEEecccc--ccceeee--eeeeeehhh
Confidence 3467889999988888887765221 12266888877654 3333222 234566788
Q ss_pred cccccEEEecCCCCCccEEEEee---------CCeEEEEeCCCceeeeee--eec-----cceecee-EEEeecCCCCeE
Q 003012 464 IYSSPTVVDLDGDGNLDILVGTS---------FGLFYVLDHHGKIREKFP--LEM-----AEIQGAV-VAADINDDGKIE 526 (857)
Q Consensus 464 ~~sspavaDlDGDG~~DIvVg~~---------~G~Lyv~~~dG~~~~~~~--~~~-----g~i~ss~-~vaD~DGDG~~D 526 (857)
+..+.+++|+|+||..||+||.. .|+||+|-+.+...+... +.. +....++ .++|+|.||..|
T Consensus 323 FG~sl~~vDlNgDG~tDLLVGAP~y~~~~~~e~GrVYVy~~~~~~~~~~~~~L~~~~~~~~RFG~Ala~LGDlN~DG~nD 402 (1030)
T KOG3637|consen 323 FGYSLAAVDLNGDGLTDLLVGAPLYFERDRYEVGRVYVYLNGGLGLFPEQITLRGPGGPSGRFGSALAALGDLNQDGYND 402 (1030)
T ss_pred cCeeEEEEEcCCCCCcceEEecCccccCCCCcceEEEEEEecCCCCcccceeEecCCCcccchhhhhhcccCcccCCCCc
Confidence 88899999999999999999874 368999987664433221 111 2223333 557999999999
Q ss_pred EEEEeC---C--CcEEEEecCCCee---EEEccc--------cccccCCEE-EecCCCCcccEEEEec-CCcEEEEEC
Q 003012 527 LVTTDT---H--GNVAAWTAEGKGI---WEQHLK--------SLVTQGPSI-GDVDGDGHSDVVVPTL-SGNIYVLSG 586 (857)
Q Consensus 527 Lvv~~~---~--G~l~~~~~~G~~~---W~~~~~--------~~~~~~vav-gDlDGDG~~DLvv~t~-~G~I~~l~~ 586 (857)
|+||.. + |.||+|...-.++ -++.+. ...+.++.= .|+||||.+||+|+.. .+.++.|+.
T Consensus 403 VAVGAP~eg~~~GaVYIy~Gs~~Gl~~~PSQ~I~g~~~~~~l~~FG~SLsG~~DlDgNgypDlaVGA~~s~~vvllrs 480 (1030)
T KOG3637|consen 403 VAVGAPFEGDNQGAVYIYHGSKGGLRSKPSQRIEGSSLGPGLQYFGQSLSGGSDLDGNGYPDLAVGAFGSGQVVLLRA 480 (1030)
T ss_pred eEEeCCcCCCCCceEEEEcCCCCCCCCCCceEEeccccCCcccccccccccCccCCCCCCccEEeccCCCCcEEEEEc
Confidence 999953 2 8899997632222 112221 123334433 6999999999999987 677777764
No 11
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.71 E-value=3.1e-06 Score=88.42 Aligned_cols=222 Identities=24% Similarity=0.309 Sum_probs=131.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|.++|+.+|+.+|+..+... . ...... ++.+ + .-+++++..+.|++++ .+|+.+|.+... +.+.
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~-----~-~~~~~~-~~~~---~--~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~ 69 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPG-----I-GGPVAT-AVPD---G--GRVYVASGDGNLYALDAKTGKVLWRFDLP-GPIS 69 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSS-----C-SSEEET-EEEE---T--TEEEEEETTSEEEEEETTTSEEEEEEECS-SCGG
T ss_pred CEEEEEECCCCCEEEEEECCCC-----C-CCccce-EEEe---C--CEEEEEcCCCEEEEEECCCCCEEEEeecc-cccc
Confidence 6799999999999999976211 0 110111 2222 1 2467777888999999 599999988874 3333
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEe-cCCCeeEEE-cccccc--ccCCEEEecCCCCcccEEEEecCCcEEEEECC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWT-AEGKGIWEQ-HLKSLV--TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~-~~G~~~W~~-~~~~~~--~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~ 587 (857)
..+... ++ .|+++..++.+++++ .+|+..|+. ...... ........+++ .-++++..++.+++++..
T Consensus 70 ~~~~~~----~~--~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~d~~ 140 (238)
T PF13360_consen 70 GAPVVD----GG--RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG---DRLYVGTSSGKLVALDPK 140 (238)
T ss_dssp SGEEEE----TT--EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET---TEEEEEETCSEEEEEETT
T ss_pred ceeeec----cc--ccccccceeeeEecccCCcceeeeeccccccccccccccCceEec---CEEEEEeccCcEEEEecC
Confidence 334332 22 467777778899998 699999994 432111 11111122222 126666679999999999
Q ss_pred CCCeecccccccCCccccce-EEEeccCCC-CCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCC
Q 003012 588 DGSKVRPYPYRTHGRVMNQV-LLVDLTKRG-EKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGD 665 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~-~v~DlDgDg-~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG 665 (857)
+|+.+|.++..... ...+. .+.+..+.. ..++ .+++.+.++.++.++-.++...|........+.+. . +|
T Consensus 141 tG~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~~~~~~---~--~~ 212 (238)
T PF13360_consen 141 TGKLLWKYPVGEPR-GSSPISSFSDINGSPVISDG--RVYVSSGDGRVVAVDLATGEKLWSKPISGIYSLPS---V--DG 212 (238)
T ss_dssp TTEEEEEEESSTT--SS--EEEETTEEEEEECCTT--EEEEECCTSSEEEEETTTTEEEEEECSS-ECECEE---C--CC
T ss_pred CCcEEEEeecCCCC-CCcceeeecccccceEEECC--EEEEEcCCCeEEEEECCCCCEEEEecCCCccCCce---e--eC
Confidence 99999987763321 11111 111111000 0122 78888888877777888887667333122222122 1 22
Q ss_pred CccEEEEecCCcEEEEeCCC
Q 003012 666 DLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 666 ~~DLvv~t~~G~V~~~~~~~ 685 (857)
.-|++.+.++.+++|+..+
T Consensus 213 -~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 213 -GTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp -TEEEEEETTTEEEEEETTT
T ss_pred -CEEEEEeCCCEEEEEECCC
Confidence 2356667799999999754
No 12
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.41 E-value=2.3e-05 Score=92.89 Aligned_cols=198 Identities=20% Similarity=0.259 Sum_probs=121.2
Q ss_pred ceEEEEECCCCceEEEEeccCCCCcccc--ccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeec--
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASF--RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM-- 507 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~--~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~-- 507 (857)
+.|+++|..+|+++|+..........+. .......+++.+ .-|++++.++.|++++ .+|+.+|.+....
T Consensus 79 g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~------~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~ 152 (527)
T TIGR03075 79 SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD------GKVFFGTLDARLVALDAKTGKVVWSKKNGDYK 152 (527)
T ss_pred CcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC------CEEEEEcCCCEEEEEECCCCCEEeeccccccc
Confidence 5699999999999999876432111000 000112233332 2477788889999999 4999999876531
Q ss_pred --cceeceeEEEeecCCCCeEEEEEeC------CCcEEEEec-CCCeeEEEcccccc-----------------------
Q 003012 508 --AEIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSLV----------------------- 555 (857)
Q Consensus 508 --g~i~ss~~vaD~DGDG~~DLvv~~~------~G~l~~~~~-~G~~~W~~~~~~~~----------------------- 555 (857)
..+.+++++.+ | -|+++.. .|.+++|+. +|+.+|........
T Consensus 153 ~~~~~tssP~v~~----g--~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 153 AGYTITAAPLVVK----G--KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccCCcEEEC----C--EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 12445566653 3 2555532 578999986 99999986543110
Q ss_pred ----ccCCEEEecCCCCccc-EEEEecC----------------CcEEEEECCCCCeecccccccCC----ccccceEEE
Q 003012 556 ----TQGPSIGDVDGDGHSD-VVVPTLS----------------GNIYVLSGKDGSKVRPYPYRTHG----RVMNQVLLV 610 (857)
Q Consensus 556 ----~~~vavgDlDGDG~~D-Lvv~t~~----------------G~I~~l~~~~G~~~~~~~~~~~g----~~~s~~~v~ 610 (857)
.....++-.--|-..+ |++++.+ ..+++++.++|+..|.|....+. ....++.+.
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0000111111223334 4444421 26899999999999988765442 244677888
Q ss_pred eccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE
Q 003012 611 DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD 644 (857)
Q Consensus 611 DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~ 644 (857)
|++.+ |....-|+.+..+|++|++|..+|...
T Consensus 307 d~~~~--G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKD--GKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccC--CcEEEEEEEeCCCceEEEEECCCCcee
Confidence 88532 122245668888999999999888653
No 13
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=98.35 E-value=0.00067 Score=83.46 Aligned_cols=88 Identities=19% Similarity=0.348 Sum_probs=64.0
Q ss_pred CCcceeEEeecCc----------eeecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCCceeecc---
Q 003012 60 KNLELRWQTEVSS----------SIYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSP--- 126 (857)
Q Consensus 60 ~~~~l~w~~~~~s----------sv~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~~~~sp--- 126 (857)
.+|++.|+.+++. ..-+||+|+| |+ +++.+-.+.|-+||-.+|+.+ |-+-.+....+++
T Consensus 162 ~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvg----g~--lYv~t~~~~V~ALDa~TGk~l--W~~d~~~~~~~~~~~~ 233 (764)
T TIGR03074 162 GNLKVAWTYHTGDLKTPDDPGEATFQATPLKVG----DT--LYLCTPHNKVIALDAATGKEK--WKFDPKLKTEAGRQHQ 233 (764)
T ss_pred cCceEEEEEECCCccccccccccccccCCEEEC----CE--EEEECCCCeEEEEECCCCcEE--EEEcCCCCcccccccc
Confidence 5799999999983 4679999994 54 555677789999999999999 9885554332211
Q ss_pred ----e-eeee-------------CCCCceEEEEEeeceeEEEEee-cCc
Q 003012 127 ----L-LYDI-------------DKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 127 ----~-~~d~-------------~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
+ .|+- .-|+ ..|+++|.||.|+.++. +|+
T Consensus 234 ~cRGvay~~~p~~~~~~~~~~~p~~~~-~rV~~~T~Dg~LiALDA~TGk 281 (764)
T TIGR03074 234 TCRGVSYYDAPAAAAGPAAPAAPADCA-RRIILPTSDARLIALDADTGK 281 (764)
T ss_pred cccceEEecCCcccccccccccccccC-CEEEEecCCCeEEEEECCCCC
Confidence 1 1221 0122 26899999999999997 798
No 14
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.32 E-value=5.4e-05 Score=79.00 Aligned_cols=181 Identities=26% Similarity=0.337 Sum_probs=111.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeec-cce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM-AEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~-g~i 510 (857)
+.|+++|..+|+++|+..+. ......|.+.+ ..+++.+.++.|++++ .+|+.+|...... ...
T Consensus 46 ~~l~~~d~~tG~~~W~~~~~---------~~~~~~~~~~~------~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~ 110 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDLP---------GPISGAPVVDG------GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA 110 (238)
T ss_dssp SEEEEEETTTSEEEEEEECS---------SCGGSGEEEET------TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred CEEEEEECCCCCEEEEeecc---------ccccceeeecc------cccccccceeeeEecccCCcceeeeecccccccc
Confidence 67999999999999999873 12223344433 3567777778999999 7999999843221 110
Q ss_pred -eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccc-cCC-----EEEe-cCCCCcccEEEEecCCcE
Q 003012 511 -QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVT-QGP-----SIGD-VDGDGHSDVVVPTLSGNI 581 (857)
Q Consensus 511 -~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~-~~v-----avgD-lDGDG~~DLvv~t~~G~I 581 (857)
........++++ -++++...+.+++++. +|+.+|......... ..+ ..+. +-.+| .+++.+.++.+
T Consensus 111 ~~~~~~~~~~~~~---~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~g~~ 185 (238)
T PF13360_consen 111 GVRSSSSPAVDGD---RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG--RVYVSSGDGRV 185 (238)
T ss_dssp STB--SEEEEETT---EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT--EEEEECCTSSE
T ss_pred ccccccCceEecC---EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC--EEEEEcCCCeE
Confidence 111112222222 3667777899999995 899999987633211 100 0111 11123 68888888888
Q ss_pred EEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE
Q 003012 582 YVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV 646 (857)
Q Consensus 582 ~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i 646 (857)
+.++..+|+.+|..+ ..+ .... ...+ + .-|++.+.++.+++++..+|...|.
T Consensus 186 ~~~d~~tg~~~w~~~--~~~-~~~~---~~~~------~-~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 186 VAVDLATGEKLWSKP--ISG-IYSL---PSVD------G-GTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEETTTTEEEEEEC--SS--ECEC---EECC------C-TEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEECCCCCEEEEec--CCC-ccCC---ceee------C-CEEEEEeCCCEEEEEECCCCCEEeE
Confidence 888888998776333 222 1111 1122 1 2466666889999999999987774
No 15
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=98.26 E-value=0.00041 Score=78.51 Aligned_cols=180 Identities=26% Similarity=0.328 Sum_probs=117.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeec-cce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEM-AEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~-g~i 510 (857)
|.++++|.++|+++|...+.. .....++|.+.. ||+ |++++.+|.+|+++. +|+..|.+.... ..+
T Consensus 78 G~i~A~d~~~g~~~W~~~~~~-------~~~~~~~~~~~~---~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 78 GNIFALNPDTGLVKWSYPLLG-------AVAQLSGPILGS---DGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CcEEEEeCCCCcEEecccCcC-------cceeccCceEEe---CCe--EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 679999999999999987642 123345666666 665 999999999999997 999999888763 122
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccc----ccccCCEEEecCCCCcccEEEEec--CCcEEE
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKS----LVTQGPSIGDVDGDGHSDVVVPTL--SGNIYV 583 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~----~~~~~vavgDlDGDG~~DLvv~t~--~G~I~~ 583 (857)
...+.+. || -+++.+.++.+++++. +|...|...... .....+.+. +| -++++.. ++.+++
T Consensus 146 ~~~~v~~----~~--~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~----~~--~vy~~~~~~~~~~~a 213 (370)
T COG1520 146 ASPPVVG----DG--TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIA----SG--TVYVGSDGYDGILYA 213 (370)
T ss_pred ecCcEEc----Cc--EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceee----cc--eEEEecCCCcceEEE
Confidence 2333333 33 3444446799999987 599999976532 122223321 11 2455545 568999
Q ss_pred EECCCCCeecccccccC-Cc--------cccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE
Q 003012 584 LSGKDGSKVRPYPYRTH-GR--------VMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV 646 (857)
Q Consensus 584 l~~~~G~~~~~~~~~~~-g~--------~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i 646 (857)
++..+|...|....... +. +..+.+ ..+ -.++.+...|.+++++..+|...|.
T Consensus 214 ~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v--~v~--------~~~~~~~~~g~~~~l~~~~G~~~W~ 275 (370)
T COG1520 214 LNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPV--YVD--------GGVYAGSYGGKLLCLDADTGELIWS 275 (370)
T ss_pred EEccCCcEeeeeeeecccCcccccccccccCceE--EEC--------CcEEEEecCCeEEEEEcCCCceEEE
Confidence 99999999987432211 11 111111 121 1246777888899999999988884
No 16
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=98.24 E-value=2.8e-05 Score=86.09 Aligned_cols=200 Identities=19% Similarity=0.176 Sum_probs=113.4
Q ss_pred cccEEEecCCCCCccEEEEeeCC--eEEEEeCCCceeeeeeee---------ccceeceeEEEeecCCCCeEEEEEeCCC
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFG--LFYVLDHHGKIREKFPLE---------MAEIQGAVVAADINDDGKIELVTTDTHG 534 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G--~Lyv~~~dG~~~~~~~~~---------~g~i~ss~~vaD~DGDG~~DLvv~~~~G 534 (857)
.+..++|+|||..+|++|..... ..|-. ...|+.... .......+.+.|+|+|+.+||+-...+.
T Consensus 89 vsv~pGDfdGDs~mDVLv~~~~Kd~e~ye~----~i~Wg~~~el~~~n~~~~~~t~q~e~ma~Dfn~D~i~Di~G~~~ne 164 (606)
T KOG4550|consen 89 VSVVPGDFDGDSQMDVLVTYLPKDYEKYEL----VIFWGQNQELDPNNMTILNRTFQDEPMAMDFNGDLIPDIFGITNNE 164 (606)
T ss_pred EEEcccCCCCcceeeEEEEecCCcceeeEE----EEeecccccccccccHHHHHhhcCCcEEEEcCCCcceeeccccccc
Confidence 45678999999999999986532 22211 112221111 1123345889999999999998665432
Q ss_pred -cEEEEecCCCee---EEEc------cccccccCCEEEecCCCCcccEEEEecC--Cc--EEEEECCCCCeecc--cccc
Q 003012 535 -NVAAWTAEGKGI---WEQH------LKSLVTQGPSIGDVDGDGHSDVVVPTLS--GN--IYVLSGKDGSKVRP--YPYR 598 (857)
Q Consensus 535 -~l~~~~~~G~~~---W~~~------~~~~~~~~vavgDlDGDG~~DLvv~t~~--G~--I~~l~~~~G~~~~~--~~~~ 598 (857)
+..-+...|+.. |... ..-.++.+-++.|+|+|=..||++.+.. +. .-.|.+.+|..... .+..
T Consensus 165 ~~~~~i~~~g~l~llc~H~a~~t~~KlN~~ip~~hafiDLn~Df~ADlfl~Tk~s~~t~~~eiW~~~~~nfs~~~~~~kp 244 (606)
T KOG4550|consen 165 SNQPQILLGGNLSLLCWHPALTTTSKLNMRIPHSHAFIDLNEDFTADLFLTTKASTSTFQFEIWENLDGNFSVSTILEKP 244 (606)
T ss_pred ccCcceecCCCCChhhcccccccchhccccCCCcceeEeccccceeeeEEEeccCCCceeeehhhcCCCceEEEEEccCC
Confidence 222223344433 4322 1224566678999999999999998742 22 33455555543211 1112
Q ss_pred cCCc--cccceEEEeccCCCCCCCCeEEEEEec------CCeEEEEcCCC-Cce-----------EEEEe---CCcc---
Q 003012 599 THGR--VMNQVLLVDLTKRGEKSKGLTIVTTSF------DGYLYLIDGPT-SCA-----------DVVDI---GETS--- 652 (857)
Q Consensus 599 ~~g~--~~s~~~v~DlDgDg~gDG~~DLvv~s~------dG~ly~~dg~~-g~~-----------~~i~~---g~~~--- 652 (857)
..++ +....++.|++ +||..|+++..- ...+|.....+ .+. .|.-. .+..
T Consensus 245 ~pan~~~vGq~vfmDfd----~dG~~dilvP~C~~~nC~~sti~~v~sgtk~w~~v~~df~d~g~tw~fvPfv~~~~~~~ 320 (606)
T KOG4550|consen 245 QPANMMVVGQSVFMDFD----GDGHMDILVPGCEDKNCQKSTIYLVRSGTKQWVPVLQDFSDKGTTWGFVPFVDEQQPTE 320 (606)
T ss_pred CCCCceeecceEEEeec----CCcceeeeecceeccccccceeeeeeccchhhhhheecccccceEEEEecCcccccccc
Confidence 2222 33457899998 578999987532 12344332221 111 11100 0111
Q ss_pred -eeeEEEEeecCCCCccEEEEe
Q 003012 653 -YSMVLADNVDGGDDLDLIVTT 673 (857)
Q Consensus 653 -~s~~~a~DlDGDG~~DLvv~t 673 (857)
.-...++|+|=||.+|++|.-
T Consensus 321 ~~it~r~GdfnlDgyPD~lVil 342 (606)
T KOG4550|consen 321 IPITLRIGDFNLDGYPDALVIL 342 (606)
T ss_pred eeEEEEecccccCCCCceEEEe
Confidence 113678999999999999874
No 17
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=98.11 E-value=0.00024 Score=87.34 Aligned_cols=198 Identities=22% Similarity=0.283 Sum_probs=119.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCcccc----ccccc-c------------ccEEEecCCCCCccEEEEeeCCeEEEEe-
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASF----RAYIY-S------------SPTVVDLDGDGNLDILVGTSFGLFYVLD- 494 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~----~~~~~-s------------spavaDlDGDG~~DIvVg~~~G~Lyv~~- 494 (857)
+.|+++|.+||+.+|+............ ++..+ . +|+++ ..-|++++.+++|++++
T Consensus 204 ~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~------~~rV~~~T~Dg~LiALDA 277 (764)
T TIGR03074 204 NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADC------ARRIILPTSDARLIALDA 277 (764)
T ss_pred CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCccccccccccccccc------CCEEEEecCCCeEEEEEC
Confidence 5699999999999999877543221000 00000 0 11111 12578888899999999
Q ss_pred CCCceeeeeeee--------cc-------ceeceeEEEeecCCCCeEEEEEeC----------CCcEEEEec-CCCeeEE
Q 003012 495 HHGKIREKFPLE--------MA-------EIQGAVVAADINDDGKIELVTTDT----------HGNVAAWTA-EGKGIWE 548 (857)
Q Consensus 495 ~dG~~~~~~~~~--------~g-------~i~ss~~vaD~DGDG~~DLvv~~~----------~G~l~~~~~-~G~~~W~ 548 (857)
.+|+..|.|... ++ ...+.+++++ | -|+++.. .|.+++|+. +|+.+|.
T Consensus 278 ~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~----g--~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 278 DTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAG----T--TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred CCCCEEEEecCCCceeeecccCcCCCcccccccCCEEEC----C--EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 589999876432 01 1234566653 2 3555532 578999986 9999998
Q ss_pred Eccccccc------------c-----CCEEEecC--------CCCcccEEE-------EecCCcEEEEECCCCCeecccc
Q 003012 549 QHLKSLVT------------Q-----GPSIGDVD--------GDGHSDVVV-------PTLSGNIYVLSGKDGSKVRPYP 596 (857)
Q Consensus 549 ~~~~~~~~------------~-----~vavgDlD--------GDG~~DLvv-------~t~~G~I~~l~~~~G~~~~~~~ 596 (857)
........ . .....|-. |...+|..- ....+.+++++..+|+..|.|.
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence 76421100 0 11111110 001111110 1125679999999999999877
Q ss_pred cccC----CccccceEEEeccCCCCCCC--CeEEEEEecCCeEEEEcCCCCceEE
Q 003012 597 YRTH----GRVMNQVLLVDLTKRGEKSK--GLTIVTTSFDGYLYLIDGPTSCADV 645 (857)
Q Consensus 597 ~~~~----g~~~s~~~v~DlDgDg~gDG--~~DLvv~s~dG~ly~~dg~~g~~~~ 645 (857)
...+ -.+.+++.+.|+.. .+| ..-|+.++.+|.+|++|..+|...|
T Consensus 432 ~~~hD~WD~D~~~~p~L~d~~~---~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 432 TVHHDLWDMDVPAQPSLVDLPD---ADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred ccCCccccccccCCceEEeeec---CCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 6433 23456778888842 133 4568889999999999999887665
No 18
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=98.10 E-value=4.8e-06 Score=69.45 Aligned_cols=56 Identities=30% Similarity=0.611 Sum_probs=36.4
Q ss_pred eecCCCCeEEEEEeCCCcEEEEecCCCeeEEEc----cc-cccccCCEEEecCCCCcccEEE
Q 003012 518 DINDDGKIELVTTDTHGNVAAWTAEGKGIWEQH----LK-SLVTQGPSIGDVDGDGHSDVVV 574 (857)
Q Consensus 518 D~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~----~~-~~~~~~vavgDlDGDG~~DLvv 574 (857)
|+|+||++||++++ .+.+++|..+|...|... .. ......+.++|+|+||++||+|
T Consensus 1 D~ngDG~~Div~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DGSVYVYLNDGDGTFQFPAQIPFSSSGSGWSVAFADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE--SSSEEEEEB-SSS-BEEEEEEBTTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEe-CCCeEEEEECCCCCeEEeeeEeeCCCCCcceeEEEEccCCCcccEEC
Confidence 79999999999998 677888877665554422 11 1234578999999999999986
No 19
>PF13517 VCBS: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; PDB: 2C25_A 2BWR_B 2C4D_A 2BWM_A.
Probab=98.03 E-value=5.7e-06 Score=68.99 Aligned_cols=57 Identities=32% Similarity=0.487 Sum_probs=34.0
Q ss_pred ecCCCCCccEEEEeeCCeEEEEeC--CCceeeeeeeec--cceeceeEEEeecCCCCeEEEE
Q 003012 472 DLDGDGNLDILVGTSFGLFYVLDH--HGKIREKFPLEM--AEIQGAVVAADINDDGKIELVT 529 (857)
Q Consensus 472 DlDGDG~~DIvVg~~~G~Lyv~~~--dG~~~~~~~~~~--g~i~ss~~vaD~DGDG~~DLvv 529 (857)
|+|+||++||++.. .+.++++.+ +|++........ ......+.++|+|+||++||+|
T Consensus 1 D~ngDG~~Div~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~D~d~DG~~Di~V 61 (61)
T PF13517_consen 1 DFNGDGRPDIVVAN-DGSVYVYLNDGDGTFQFPAQIPFSSSGSGWSVAFADIDGDGKPDILV 61 (61)
T ss_dssp -SSSSSS-EEEEE--SSSEEEEEB-SSS-BEEEEEEBTTCSGGTTTTCEE-SSSSSS-EEE-
T ss_pred CCCCCCCccEEEEe-CCCeEEEEECCCCCeEEeeeEeeCCCCCcceeEEEEccCCCcccEEC
Confidence 79999999999998 555555554 455443322221 2223458899999999999986
No 20
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=97.99 E-value=0.0015 Score=73.89 Aligned_cols=227 Identities=23% Similarity=0.393 Sum_probs=134.6
Q ss_pred EEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeec-cceec
Q 003012 435 IVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEM-AEIQG 512 (857)
Q Consensus 435 v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~-g~i~s 512 (857)
+...+..+|+..|...+.-. ....+..++.++ +|| -++++..+|.|++++. +|+.+|..+... ....+
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~------~~~~~~~~~~~~--~dg--~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~ 104 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSG------GGGIYAGPAPAD--GDG--TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS 104 (370)
T ss_pred eEEEcccCcceeeeeecccC------ccceEeccccEe--eCC--eEEEecCCCcEEEEeCCCCcEEecccCcCcceecc
Confidence 44455666889998663211 123344442222 233 4666678889999995 777788766652 12333
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccc--ccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKS--LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~--~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
.+.+.. ||+ |++++.++.++|++. +|+..|...... .....+.++ || -+++.+.++.+++++..+|
T Consensus 105 ~~~~~~---~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~----~~--~v~~~s~~g~~~al~~~tG 173 (370)
T COG1520 105 GPILGS---DGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG----DG--TVYVGTDDGHLYALNADTG 173 (370)
T ss_pred CceEEe---CCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc----Cc--EEEEecCCCeEEEEEccCC
Confidence 344444 665 999999999999998 999999988776 122222333 23 2455557899999999999
Q ss_pred Ceeccccccc--CCccccceEEEeccCCCCCCCCeEEEEEec--CCeEEEEcCCCCceEEE-----EeCCcce---eeEE
Q 003012 590 SKVRPYPYRT--HGRVMNQVLLVDLTKRGEKSKGLTIVTTSF--DGYLYLIDGPTSCADVV-----DIGETSY---SMVL 657 (857)
Q Consensus 590 ~~~~~~~~~~--~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~--dG~ly~~dg~~g~~~~i-----~~g~~~~---s~~~ 657 (857)
+..|.+.... .......+.+.+ --++++.. ++.+|.++...|...|. .++.... ....
T Consensus 174 ~~~W~~~~~~~~~~~~~~~~~~~~----------~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~ 243 (370)
T COG1520 174 TLKWTYETPAPLSLSIYGSPAIAS----------GTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVD 243 (370)
T ss_pred cEEEEEecCCccccccccCceeec----------ceEEEecCCCcceEEEEEccCCcEeeeeeeecccCccccccccccc
Confidence 9998866543 222333333111 12556655 66899999887777664 2221111 0100
Q ss_pred EEeecCCCCccEEEEecCCcEEEEeCCCCCCCcccceecc
Q 003012 658 ADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSIN 697 (857)
Q Consensus 658 a~DlDGDG~~DLvv~t~~G~V~~~~~~~~~~pl~~W~s~~ 697 (857)
..-+.-++ .++....+|.++++.... ....|....
T Consensus 244 ~~~v~v~~--~~~~~~~~g~~~~l~~~~---G~~~W~~~~ 278 (370)
T COG1520 244 GGPVYVDG--GVYAGSYGGKLLCLDADT---GELIWSFPA 278 (370)
T ss_pred CceEEECC--cEEEEecCCeEEEEEcCC---CceEEEEec
Confidence 01111112 246777788899998753 345575543
No 21
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.90 E-value=0.00068 Score=71.71 Aligned_cols=173 Identities=17% Similarity=0.235 Sum_probs=120.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEE-EecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTV-VDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspav-aDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i 510 (857)
+.+.++|..+|+..|++.+. ..+..++.+ +|+ +++|...|.+|++. ++|...|.+... +.+
T Consensus 33 ~~~~avd~~sG~~~We~ilg---------~RiE~sa~vvgdf-------VV~GCy~g~lYfl~~~tGs~~w~f~~~-~~v 95 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILG---------VRIECSAIVVGDF-------VVLGCYSGGLYFLCVKTGSQIWNFVIL-ETV 95 (354)
T ss_pred ceEEEecCCCCcEEeehhhC---------ceeeeeeEEECCE-------EEEEEccCcEEEEEecchhheeeeeeh-hhh
Confidence 66889999999999998774 334445544 442 88899999999998 799999988766 344
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
.. -+..|+++ .-|+.++.++++++++. +-.-.|+.+.++.+..++.++-. .--|+++...|.+.+...+++
T Consensus 96 k~-~a~~d~~~---glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g----~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 96 KV-RAQCDFDG---GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPG----DGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cc-ceEEcCCC---ceEEEecCCCcEEEecccccceEEecccCCceeccceecCC----CceEEEEeccceEEEEccCCC
Confidence 33 33455553 24788899999999987 44457888777777667776542 235899999999999988888
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT 640 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~ 640 (857)
....-|.....+.+.+.+...- .-+.++.-+|.+..++-.+
T Consensus 168 ~~~~~w~~~~~~PiF~splcv~----------~sv~i~~VdG~l~~f~~sG 208 (354)
T KOG4649|consen 168 SSTEFWAATRFGPIFASPLCVG----------SSVIITTVDGVLTSFDESG 208 (354)
T ss_pred CcceehhhhcCCccccCceecc----------ceEEEEEeccEEEEEcCCC
Confidence 5544444444555444433221 2356666778888887443
No 22
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.83 E-value=0.00025 Score=66.50 Aligned_cols=106 Identities=19% Similarity=0.362 Sum_probs=75.6
Q ss_pred cccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~ 545 (857)
++.++.|+|+||..+|++++.+..|.+|+++ ..+...+.. ..+ .....+.. .-+..+-.+|.+-+|+. ...
T Consensus 3 ~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-e~~~Ei~e~-~~v---~~L~~~~~---~~F~Y~l~NGTVGvY~~-~~R 73 (111)
T PF14783_consen 3 TALCLFDFDGDGENELLVGSDDFEIRVFKGD-EIVAEITET-DKV---TSLCSLGG---GRFAYALANGTVGVYDR-SQR 73 (111)
T ss_pred eEEEEEecCCCCcceEEEecCCcEEEEEeCC-cEEEEEecc-cce---EEEEEcCC---CEEEEEecCCEEEEEeC-cce
Confidence 4688999999999999999999999999876 333333222 111 22333332 24666777888888865 567
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCCcE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNI 581 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I 581 (857)
.|....... ...+...|+|+||.++|+++-.+|.+
T Consensus 74 lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeE
Confidence 798765443 44678899999999999999777755
No 23
>KOG4550 consensus Predicted membrane protein [Function unknown]
Probab=97.74 E-value=0.00031 Score=78.14 Aligned_cols=199 Identities=15% Similarity=0.196 Sum_probs=109.0
Q ss_pred cEEEecCCCCCccEEEEeeCC-eEEE-EeC-C-Cceeee--eeeeccc-eeceeEEEeecCCCCeEEEEEeCCCcEEEEe
Q 003012 468 PTVVDLDGDGNLDILVGTSFG-LFYV-LDH-H-GKIREK--FPLEMAE-IQGAVVAADINDDGKIELVTTDTHGNVAAWT 540 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G-~Lyv-~~~-d-G~~~~~--~~~~~g~-i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~ 540 (857)
.+++|+|.|-..||+|-..+. .+.+ +.. + -.+..+ +...... ...++..+|+|||-.+|+++.-.......|+
T Consensus 38 aAFGDfNsD~~TD~fV~r~G~~~l~~ll~~~~ap~fkpg~~~~~~~~s~~ivsv~pGDfdGDs~mDVLv~~~~Kd~e~ye 117 (606)
T KOG4550|consen 38 AAFGDFNSDKQTDLFVLREGRNDLIVLLADQNAPYFKPGVKVSFKNHSALIVSVVPGDFDGDSQMDVLVTYLPKDYEKYE 117 (606)
T ss_pred eeecccCcccccceEEEecCcccceeeehhccccccccCCceeecCCcceEEEEcccCCCCcceeeEEEEecCCcceeeE
Confidence 579999999999999876432 2322 221 1 111111 1121111 2345788999999999999985443222221
Q ss_pred cCCCeeEEEc----------cccccccCCEEEecCCCCcccEEEEecCC-cEEEEECCCCCee---cc----cccccCCc
Q 003012 541 AEGKGIWEQH----------LKSLVTQGPSIGDVDGDGHSDVVVPTLSG-NIYVLSGKDGSKV---RP----YPYRTHGR 602 (857)
Q Consensus 541 ~~G~~~W~~~----------~~~~~~~~vavgDlDGDG~~DLvv~t~~G-~I~~l~~~~G~~~---~~----~~~~~~g~ 602 (857)
. ...|... ........+.+.|+|+|+.+||+--+.+. .-..+. ..|+.- |. ++....=+
T Consensus 118 ~--~i~Wg~~~el~~~n~~~~~~t~q~e~ma~Dfn~D~i~Di~G~~~ne~~~~~i~-~~g~l~llc~H~a~~t~~KlN~~ 194 (606)
T KOG4550|consen 118 L--VIFWGQNQELDPNNMTILNRTFQDEPMAMDFNGDLIPDIFGITNNESNQPQIL-LGGNLSLLCWHPALTTTSKLNMR 194 (606)
T ss_pred E--EEeecccccccccccHHHHHhhcCCcEEEEcCCCcceeecccccccccCccee-cCCCCChhhcccccccchhcccc
Confidence 1 1123211 11233456778999999999998765432 111111 234432 22 11121223
Q ss_pred cccceEEEeccCCCCCCCCeEEEEEecC--CeEE--EEcCCC-Cc--eEEEEe--CCc--ceeeEEEEeecCCCCccEEE
Q 003012 603 VMNQVLLVDLTKRGEKSKGLTIVTTSFD--GYLY--LIDGPT-SC--ADVVDI--GET--SYSMVLADNVDGGDDLDLIV 671 (857)
Q Consensus 603 ~~s~~~v~DlDgDg~gDG~~DLvv~s~d--G~ly--~~dg~~-g~--~~~i~~--g~~--~~s~~~a~DlDGDG~~DLvv 671 (857)
+..+-++.|+|+ |-..||+..+.. +.++ ++.+-. .+ ..|+.. +.. ....+++.|+|+||..|+++
T Consensus 195 ip~~hafiDLn~----Df~ADlfl~Tk~s~~t~~~eiW~~~~~nfs~~~~~~kp~pan~~~vGq~vfmDfd~dG~~dilv 270 (606)
T KOG4550|consen 195 IPHSHAFIDLNE----DFTADLFLTTKASTSTFQFEIWENLDGNFSVSTILEKPQPANMMVVGQSVFMDFDGDGHMDILV 270 (606)
T ss_pred CCCcceeEeccc----cceeeeEEEeccCCCceeeehhhcCCCceEEEEEccCCCCCCceeecceEEEeecCCcceeeee
Confidence 455678999994 567888877643 3222 122222 22 223321 111 22357888999999999999
Q ss_pred Ee
Q 003012 672 TT 673 (857)
Q Consensus 672 ~t 673 (857)
..
T Consensus 271 P~ 272 (606)
T KOG4550|consen 271 PG 272 (606)
T ss_pred cc
Confidence 63
No 24
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.57 E-value=0.0012 Score=62.00 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 558 GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 558 ~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
++++.|+||||..+|++++.+..|.+|++. ..+..... . .....+..+.. ..++.+..+|.+-+++
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e--~---~~v~~L~~~~~-------~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE--T---DKVTSLCSLGG-------GRFAYALANGTVGVYD 69 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec--c---cceEEEEEcCC-------CEEEEEecCCEEEEEe
Confidence 568899999999999999999999999963 44433221 1 12334555531 3466777788777776
Q ss_pred CCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEE
Q 003012 638 GPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVF 679 (857)
Q Consensus 638 g~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~ 679 (857)
.... .|-.-.......+...|+|+||.++||++-.+|.|-
T Consensus 70 ~~~R--lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 70 RSQR--LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred Ccce--eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 5432 231111122334677899999999999999888764
No 25
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=95.94 E-value=0.0063 Score=45.24 Aligned_cols=28 Identities=46% Similarity=0.657 Sum_probs=21.3
Q ss_pred cccEEEecCCCCCccEEEE----eeCCeEEEE
Q 003012 466 SSPTVVDLDGDGNLDILVG----TSFGLFYVL 493 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg----~~~G~Lyv~ 493 (857)
.+++++|+||||+.||+++ ...|++|+|
T Consensus 3 ~~~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 3 SSVAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp SCEEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred cccEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 4688999999999999995 445667664
No 26
>PF01839 FG-GAP: FG-GAP repeat; InterPro: IPR013517 This region contains the extracellular repeat that is found in up to seven copies in alpha integrins. This repeat has been predicted to fold into a beta propeller structure []. The repeat is called the FG-GAP repeat after two conserved motifs in the repeat []. The FG-GAP repeats are found in the N terminus of integrin alpha chains, a region that has been shown to be important for ligand binding []. A putative Ca2+ binding motif is found in some of the repeats. ; PDB: 1L5G_A 3IJE_A 1M1X_A 1JV2_A 1U8C_A 3V4P_C 3V4V_C 3VI3_A 3VI4_C 2VDN_A ....
Probab=95.61 E-value=0.0092 Score=44.35 Aligned_cols=29 Identities=34% Similarity=0.664 Sum_probs=21.0
Q ss_pred ccCCEEEecCCCCcccEEEE----ecCCcEEEE
Q 003012 556 TQGPSIGDVDGDGHSDVVVP----TLSGNIYVL 584 (857)
Q Consensus 556 ~~~vavgDlDGDG~~DLvv~----t~~G~I~~l 584 (857)
..+++++|+||||+.||+++ ..+|.+|+|
T Consensus 2 G~~~~~gD~ngDG~~Dl~vg~~~~~~~G~v~v~ 34 (34)
T PF01839_consen 2 GSSVAVGDFNGDGYDDLAVGYNNGGNAGAVYVY 34 (34)
T ss_dssp TSCEEEESTSSSSS-EEEEETTTTCTCBEEEEE
T ss_pred CcccEEEEcCCCCCccEEEEcCCCCcCCEEEEC
Confidence 35678999999999999996 334555543
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=94.98 E-value=4.4 Score=45.41 Aligned_cols=220 Identities=15% Similarity=0.191 Sum_probs=114.1
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAE 509 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~ 509 (857)
++|.|.+|...+|...|........ + .+..--| .+ .=++.|+.+|.+++|.- .+.....++ |
T Consensus 126 msG~v~v~~~stg~~~~~~~~e~~d----i-eWl~WHp-~a-------~illAG~~DGsvWmw~ip~~~~~kv~~---G- 188 (399)
T KOG0296|consen 126 MSGKVLVFKVSTGGEQWKLDQEVED----I-EWLKWHP-RA-------HILLAGSTDGSVWMWQIPSQALCKVMS---G- 188 (399)
T ss_pred CCccEEEEEcccCceEEEeecccCc----e-EEEEecc-cc-------cEEEeecCCCcEEEEECCCcceeeEec---C-
Confidence 5688999999999988876421110 0 1111111 11 12455677888888873 332222221 2
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
-......++|=.||+. ++.+..+|.+.+|+. +|.+........ .......+++.+|.. ++-++..+.++...+.+
T Consensus 189 h~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~~~~~-~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNLAGST-LTKGNSEGVACGVNNGS 264 (399)
T ss_pred CCCCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccc--cCcCCccccccccce-eEeccCCccEEEEcccc
Confidence 2345678888889875 667777999999987 888887644211 111122233333332 33333444555555555
Q ss_pred CCeeccccc----ccCC------ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEE
Q 003012 589 GSKVRPYPY----RTHG------RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLA 658 (857)
Q Consensus 589 G~~~~~~~~----~~~g------~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a 658 (857)
|+.+.-... ...+ .+-+.+...++ +-.+++.-+|.+.++|-.....+.+-.-+.+.
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~l---------pL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V----- 330 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKL---------PLAACGSVDGTIAIYDLAASTLRHICEHEDGV----- 330 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhccccccc---------chhhcccccceEEEEecccchhheeccCCCce-----
Confidence 554321110 0000 01111111122 22355666788877775543333221111121
Q ss_pred EeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 659 DNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 659 ~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.++-=.+...|+.++.+|.|+.|+..+
T Consensus 331 ~~l~w~~t~~l~t~c~~g~v~~wDaRt 357 (399)
T KOG0296|consen 331 TKLKWLNTDYLLTACANGKVRQWDART 357 (399)
T ss_pred EEEEEcCcchheeeccCceEEeeeccc
Confidence 122222367899999999999999854
No 28
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.83 E-value=5.2 Score=40.63 Aligned_cols=212 Identities=20% Similarity=0.202 Sum_probs=115.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeCC-Cceeeeeeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHH-GKIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~d-G~~~~~~~~~~g~i 510 (857)
+.+..|+..+++........ ...+....+..++ .++++.. ++.+++++.. ++....+...
T Consensus 73 ~~i~i~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---- 134 (289)
T cd00200 73 KTIRLWDLETGECVRTLTGH------------TSYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLRGH---- 134 (289)
T ss_pred CeEEEEEcCcccceEEEecc------------CCcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEeccC----
Confidence 66888888766544332210 0123445555553 4666655 8889998853 5544333311
Q ss_pred eceeEEEeecCCCCeEEEEEe-CCCcEEEEecC-CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 511 QGAVVAADINDDGKIELVTTD-THGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~-~~G~l~~~~~~-G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
...+....++.++ .++++. .++.+.+|+.. ++....... ....+....+..+|. .+++++.++.+..|+..+
T Consensus 135 ~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 135 TDWVNSVAFSPDG--TFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CCcEEEEEEcCcC--CEEEEEcCCCcEEEEEccccccceeEec---CccccceEEECCCcC-EEEEecCCCcEEEEECCC
Confidence 1234555566664 344444 48899999864 444333221 112344455666663 477777789999999877
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCc
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDL 667 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~ 667 (857)
++....+... ..++....++. + ..-++++..+|.+++++...+.... +. . ....+....+..+|.
T Consensus 209 ~~~~~~~~~~-----~~~i~~~~~~~----~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~-~--~~~~i~~~~~~~~~~- 274 (289)
T cd00200 209 GKCLGTLRGH-----ENGVNSVAFSP----D-GYLLASGSEDGTIRVWDLRTGECVQTLS-G--HTNSVTSLAWSPDGK- 274 (289)
T ss_pred Cceecchhhc-----CCceEEEEEcC----C-CcEEEEEcCCCcEEEEEcCCceeEEEcc-c--cCCcEEEEEECCCCC-
Confidence 6665443211 11333344442 2 2334444448888888866543222 22 1 111233445666654
Q ss_pred cEEEEecCCcEEEEe
Q 003012 668 DLIVTTMNGNVFCFS 682 (857)
Q Consensus 668 DLvv~t~~G~V~~~~ 682 (857)
-|++++.+|.+.+|+
T Consensus 275 ~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 RLASGSADGTIRIWD 289 (289)
T ss_pred EEEEecCCCeEEecC
Confidence 367778888887764
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.68 E-value=3.2 Score=44.21 Aligned_cols=216 Identities=15% Similarity=0.188 Sum_probs=118.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceec
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQG 512 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~s 512 (857)
..++.||..||++..+..-. .+..-.+-||.+-. -++-++.+..+-+|+-.-.-..+.++. .+...
T Consensus 81 k~v~vwDV~TGkv~Rr~rgH------------~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQil-dea~D 146 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRRFRGH------------LAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQIL-DEAKD 146 (307)
T ss_pred ceEEEEEcccCeeeeecccc------------cceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchh-hhhcC
Confidence 35999999999975433211 12233445665532 233344566788887433222222221 23334
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCe
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~ 591 (857)
.+.-.|+++ .+|+.++.+|.+..|+. .|.. .+.. .++.+...-+-.||.- ++++..++.+..++..+|+.
T Consensus 147 ~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l-~sDy----~g~pit~vs~s~d~nc-~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 147 GVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTL-SSDY----FGHPITSVSFSKDGNC-SLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred ceeEEEecc---cEEEeeccCCcEEEEEeeccee-ehhh----cCCcceeEEecCCCCE-EEEeeccceeeecccchhHH
Confidence 455566653 68999999999999976 4543 3322 2333444555566654 55667788999999999998
Q ss_pred ecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEE
Q 003012 592 VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIV 671 (857)
Q Consensus 592 ~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv 671 (857)
+..|.-...-.+--.- =++ .....++.++++|.+|.++.-.+.... .-...+.+.+.|++---..+-++
T Consensus 218 L~sYkGhkn~eykldc---~l~-----qsdthV~sgSEDG~Vy~wdLvd~~~~s---k~~~~~~v~v~dl~~hp~~~~f~ 286 (307)
T KOG0316|consen 218 LKSYKGHKNMEYKLDC---CLN-----QSDTHVFSGSEDGKVYFWDLVDETQIS---KLSVVSTVIVTDLSCHPTMDDFI 286 (307)
T ss_pred HHHhcccccceeeeee---eec-----ccceeEEeccCCceEEEEEeccceeee---eeccCCceeEEeeecccCcccee
Confidence 8665433221111110 111 123457888999999998865443221 01122234455565544444444
Q ss_pred EecCCcEEEEe
Q 003012 672 TTMNGNVFCFS 682 (857)
Q Consensus 672 ~t~~G~V~~~~ 682 (857)
..+.+.++.|.
T Consensus 287 ~A~~~~~~~~~ 297 (307)
T KOG0316|consen 287 TATGHGDLFWY 297 (307)
T ss_pred EecCCceecee
Confidence 44445555554
No 30
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.90 E-value=13 Score=43.37 Aligned_cols=222 Identities=13% Similarity=0.186 Sum_probs=113.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeee-eeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKF-PLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~-~~~~g~i~ 511 (857)
|.++.|.+.++.+.-+..+ -.. +.+ ......-|-++| |++.+..+|.|+++...+...... ....|.+.
T Consensus 222 ~H~~Fw~~~~~~l~k~~~~--fek--~ek----k~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~ 291 (626)
T KOG2106|consen 222 GHLYFWTLRGGSLVKRQGI--FEK--REK----KFVLCVTFLENG--DVITGDSGGNILIWSKGTNRISKQVHAHDGGVF 291 (626)
T ss_pred ceEEEEEccCCceEEEeec--ccc--ccc----eEEEEEEEcCCC--CEEeecCCceEEEEeCCCceEEeEeeecCCceE
Confidence 6688888887766444332 111 111 113333344454 789999999999999766543221 22224444
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECC----
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK---- 587 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~---- 587 (857)
+-..+ +||. |+-+..+.++..|+.+=+.+-+.+++...+..-+++ -|+.||++++....|..=.-.
T Consensus 292 ~L~~l----r~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~----e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 292 SLCML----RDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVA----EGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred EEEEe----cCcc--EeecCccceEEeccccccccccccCchhcCCeeEEe----cCCCcEEEeeccceEEEeeecCCce
Confidence 32222 3453 455666677888864322222222222111111222 234456666543222110000
Q ss_pred -----CCCeecccccccC------------------------CccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcC
Q 003012 588 -----DGSKVRPYPYRTH------------------------GRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDG 638 (857)
Q Consensus 588 -----~G~~~~~~~~~~~------------------------g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg 638 (857)
.|..+|.+..... -.+..+...+|+.. .| -|+++...|.+++++.
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhp----sg--~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHP----SG--VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccC----cc--eEEEeeccceEEEEec
Confidence 1222222111100 01223555777763 33 7888999999999997
Q ss_pred CCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 639 PTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 639 ~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
.+.-...+...... +.+.-++-||.. |.+++.++.+|+|.-.
T Consensus 436 e~~~lv~~~~d~~~---ls~v~ysp~G~~-lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 436 ETQDLVTIHTDNEQ---LSVVRYSPDGAF-LAVGSHDNHIYIYRVS 477 (626)
T ss_pred ccceeEEEEecCCc---eEEEEEcCCCCE-EEEecCCCeEEEEEEC
Confidence 76433333333222 333447777764 8888999999998863
No 31
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.58 E-value=9.4 Score=38.73 Aligned_cols=214 Identities=19% Similarity=0.205 Sum_probs=115.2
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCC-Cceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHH-GKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~d-G~~~~~~~~~~g~i~ 511 (857)
|.+..|+..+++........ ........+..++ .-+++++.+|.+++++.. ++....+... .
T Consensus 31 g~i~i~~~~~~~~~~~~~~~------------~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~~~~~~~~~----~ 93 (289)
T cd00200 31 GTIKVWDLETGELLRTLKGH------------TGPVRDVAASADG-TYLASGSSDKTIRLWDLETGECVRTLTGH----T 93 (289)
T ss_pred cEEEEEEeeCCCcEEEEecC------------CcceeEEEECCCC-CEEEEEcCCCeEEEEEcCcccceEEEecc----C
Confidence 56778887776644333211 0112234455555 346666778899998853 3433333221 1
Q ss_pred ceeEEEeecCCCCeEEEEEeC-CCcEEEEecC-CCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCC
Q 003012 512 GAVVAADINDDGKIELVTTDT-HGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKD 588 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~-G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~ 588 (857)
..+....+..++ .++++.. ++.+.+|+.. ++...... .....+....++.++ .++++.. ++.++.|+..+
T Consensus 94 ~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~--~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 94 SYVSSVAFSPDG--RILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSPDG--TFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred CcEEEEEEcCCC--CEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcCcC--CEEEEEcCCCcEEEEEccc
Confidence 234455566553 3555544 8899999874 55444332 111234445565553 3555554 88999999776
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
++....+.. . ...+....++. ++ ..+++++.+|.+++++-..+.....-... ...+....++.++ .
T Consensus 167 ~~~~~~~~~--~---~~~i~~~~~~~----~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~--~ 232 (289)
T cd00200 167 GKCVATLTG--H---TGEVNSVAFSP----DG-EKLLSSSSDGTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDG--Y 232 (289)
T ss_pred cccceeEec--C---ccccceEEECC----Cc-CEEEEecCCCcEEEEECCCCceecchhhc--CCceEEEEEcCCC--c
Confidence 665543331 1 12333444542 22 35777777898888886654322211011 1123333466663 3
Q ss_pred EEEEe-cCCcEEEEeCC
Q 003012 669 LIVTT-MNGNVFCFSTP 684 (857)
Q Consensus 669 Lvv~t-~~G~V~~~~~~ 684 (857)
++++. .+|.+++|+..
T Consensus 233 ~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 233 LLASGSEDGTIRVWDLR 249 (289)
T ss_pred EEEEEcCCCcEEEEEcC
Confidence 55554 48999999864
No 32
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=93.32 E-value=2.5 Score=50.36 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=46.8
Q ss_pred CcEEEEECCCCCeecccccccCC----ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE
Q 003012 579 GNIYVLSGKDGSKVRPYPYRTHG----RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD 644 (857)
Q Consensus 579 G~I~~l~~~~G~~~~~~~~~~~g----~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~ 644 (857)
..|.+++..+|+..|-+....+. ...+.+.+.|+-.| |.-.+-++....+|.+|++|..+|...
T Consensus 426 ssivAlD~~TG~~kW~yQtvhhDlWDmDvp~qp~L~D~~~D--G~~vpalv~ptk~G~~YVlDRrtGe~l 493 (773)
T COG4993 426 SSIVALDATTGKLKWVYQTVHHDLWDMDVPAQPTLLDITKD--GKVVPALVHPTKNGFIYVLDRRTGELL 493 (773)
T ss_pred ceeEEecCCCcceeeeeeccCcchhcccCCCCceEEEeecC--CcEeeeeecccccCcEEEEEcCCCccc
Confidence 46888999999998876654432 24566788898754 334556778888999999998887653
No 33
>PTZ00420 coronin; Provisional
Probab=92.47 E-value=31 Score=41.79 Aligned_cols=205 Identities=12% Similarity=0.117 Sum_probs=108.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCce-eee--eeee-ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKI-REK--FPLE-MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA- 541 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~-~~~--~~~~-~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~- 541 (857)
+.-.+++.+...-|+.++.++.|.+++- ++.. ... .+.. .......+....++.++..-++.++.++.+.+|+.
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~ 156 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE 156 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence 3445566553234566777888888884 3321 110 0111 01112345566677777655566778899999986
Q ss_pred CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 542 EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 542 ~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
++...+.... ...+.-..++.||.. |++++.++.+.+|+..+|..+..+...........+.+..+.+ ++.
T Consensus 157 tg~~~~~i~~----~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~----d~~ 227 (568)
T PTZ00420 157 NEKRAFQINM----PKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG----DDN 227 (568)
T ss_pred CCcEEEEEec----CCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC----CCC
Confidence 5655554322 123455667778763 4445568899999998887765443322211112222233321 222
Q ss_pred eEEEEEecCC----eEEEEcCCC--CceEEEEeCCcceeeEEEEeecCC-CCccEEEEecCCcEEEEeCCC
Q 003012 622 LTIVTTSFDG----YLYLIDGPT--SCADVVDIGETSYSMVLADNVDGG-DDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 622 ~DLvv~s~dG----~ly~~dg~~--g~~~~i~~g~~~~s~~~a~DlDGD-G~~DLvv~t~~G~V~~~~~~~ 685 (857)
-|++++.++ .+.+++... .....+.+.......... +|.| |.. ++++..++.+++|+...
T Consensus 228 -~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~--~D~~tg~l-~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 228 -YILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH--YDESTGLI-YLIGKGDGNCRYYQHSL 294 (568)
T ss_pred -EEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe--eeCCCCCE-EEEEECCCeEEEEEccC
Confidence 355555443 577777553 222222222222221222 2333 433 66677999999999743
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.43 E-value=19 Score=42.31 Aligned_cols=201 Identities=18% Similarity=0.183 Sum_probs=121.3
Q ss_pred ccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe
Q 003012 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (857)
Q Consensus 467 spavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~ 545 (857)
+....++-.||.. ++.+..++.+.++.. .++......+ ..-...+.-..+--||. -++-++.+..+.+|+..-..
T Consensus 161 sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 161 SVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccc--cccccceeeeEECCCCc-EEEEecCCceEEEeeccCCC
Confidence 3455788889988 666666776666654 2321000111 11112233344456676 45555667788888872221
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLv 625 (857)
.-...+. .....+...+|+.+| .-|+.++.++.|.+|+-.+|+....+... ..++...+++.| | ..|+
T Consensus 237 ~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-----s~~is~~~f~~d----~-~~l~ 304 (456)
T KOG0266|consen 237 RNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH-----SDGISGLAFSPD----G-NLLV 304 (456)
T ss_pred eEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc-----CCceEEEEECCC----C-CEEE
Confidence 1111111 223345677899999 66788888999999998888776554433 235666788743 3 3566
Q ss_pred EEecCCeEEEEcCCCCceE---EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 626 TTSFDGYLYLIDGPTSCAD---VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 626 v~s~dG~ly~~dg~~g~~~---~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.++.++.+.+++-.++... .+.-.+... .+...-+..+|+. |++++.++.+..|+...
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKY-LLSASLDRTLKLWDLRS 365 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcE-EEEecCCCeEEEEEccC
Confidence 6788999999998777632 222222222 4455567788864 77778888999988764
No 35
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.41 E-value=30 Score=40.59 Aligned_cols=160 Identities=19% Similarity=0.310 Sum_probs=100.0
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
+...+|+.+| .-|+.++.++.+.+++ .+|+....+... ...+...+++.||.. |+.++.++.+.+|+. +|..
T Consensus 249 v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----s~~is~~~f~~d~~~-l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 249 VTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGH----SDGISGLAFSPDGNL-LVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred eEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeecc----CCceEEEEECCCCCE-EEEcCCCccEEEEECCCCce
Confidence 4678899999 6777888889999988 456766554443 235778899999964 556678999999987 4442
Q ss_pred eEEEcccccccc-CCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 546 IWEQHLKSLVTQ-GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 546 ~W~~~~~~~~~~-~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
.=.......... .+...-+.-+|.. ++++..++.+..|+-..+.....+.....+ . ..+.-... .-+..-+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~fsp~~~~-ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~-~-~~~~~~~~-----~~~~~~i 394 (456)
T KOG0266|consen 323 LCLKLLSGAENSAPVTSVQFSPNGKY-LLSASLDRTLKLWDLRSGKSVGTYTGHSNL-V-RCIFSPTL-----STGGKLI 394 (456)
T ss_pred eeeecccCCCCCCceeEEEECCCCcE-EEEecCCCeEEEEEccCCcceeeecccCCc-c-eeEecccc-----cCCCCeE
Confidence 200111111111 4566667777753 666666778888877666655444333222 0 11111111 1345678
Q ss_pred EEEecCCeEEEEcCCCC
Q 003012 625 VTTSFDGYLYLIDGPTS 641 (857)
Q Consensus 625 vv~s~dG~ly~~dg~~g 641 (857)
+.+..++.+++++-.++
T Consensus 395 ~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 395 YSGSEDGSVYVWDSSSG 411 (456)
T ss_pred EEEeCCceEEEEeCCcc
Confidence 88899999998886654
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.70 E-value=55 Score=41.15 Aligned_cols=221 Identities=12% Similarity=0.071 Sum_probs=111.4
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCC-CCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccc
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDG-DGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAE 509 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDG-DG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~ 509 (857)
.|.|.+||..+++....... + .....-.+++. ||. -|+.++.++.+.+++- ++.....+..
T Consensus 554 Dg~v~lWd~~~~~~~~~~~~-----------H-~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---- 616 (793)
T PLN00181 554 EGVVQVWDVARSQLVTEMKE-----------H-EKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIKT---- 616 (793)
T ss_pred CCeEEEEECCCCeEEEEecC-----------C-CCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEec----
Confidence 46677777777665443221 1 11233455553 442 3566677888998884 5554322221
Q ss_pred eeceeEEEeecC-CCCeEEEEEeCCCcEEEEec-CCCe-eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 510 IQGAVVAADIND-DGKIELVTTDTHGNVAAWTA-EGKG-IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 510 i~ss~~vaD~DG-DG~~DLvv~~~~G~l~~~~~-~G~~-~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
...+....+.. +| .-|++++.++.+++|+. ++.. ..... .....+....+. |+. -++.++.++.+.+|+.
T Consensus 617 -~~~v~~v~~~~~~g-~~latgs~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 617 -KANICCVQFPSESG-RSLAFGSADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDL 689 (793)
T ss_pred -CCCeEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCCccceEec---CCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeC
Confidence 12344455533 34 35778888999999986 3332 21111 111122223332 332 3677778888988886
Q ss_pred CCCCeecc-cccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEe--CC-------c-cee
Q 003012 587 KDGSKVRP-YPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDI--GE-------T-SYS 654 (857)
Q Consensus 587 ~~G~~~~~-~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~--g~-------~-~~s 654 (857)
..+..... .+..........+....++. ++ .-|++++.++.+++++.......+ ... .. . ...
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~----~~-~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 764 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSV----SD-GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ 764 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcC----CC-CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc
Confidence 43311000 00110001112222333432 22 367888899998888754332111 000 00 0 011
Q ss_pred eEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 655 MVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 655 ~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
.+....+..+|.. |+.++.+|.|.+|+
T Consensus 765 ~V~~v~ws~~~~~-lva~~~dG~I~i~~ 791 (793)
T PLN00181 765 FISSVCWRGQSST-LVAANSTGNIKILE 791 (793)
T ss_pred EEEEEEEcCCCCe-EEEecCCCcEEEEe
Confidence 2344456777764 77778899998886
No 37
>PTZ00421 coronin; Provisional
Probab=90.64 E-value=44 Score=39.86 Aligned_cols=201 Identities=16% Similarity=0.205 Sum_probs=103.2
Q ss_pred cEEEecCC-CCCccEEEEeeCCeEEEEeC-CCceee--eeeeec-cceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-
Q 003012 468 PTVVDLDG-DGNLDILVGTSFGLFYVLDH-HGKIRE--KFPLEM-AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA- 541 (857)
Q Consensus 468 pavaDlDG-DG~~DIvVg~~~G~Lyv~~~-dG~~~~--~~~~~~-g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~- 541 (857)
+.-..++. |+. -|+.++.++.|.+|+- ++.... ..++.. ..-...+....+..++..-|+.++.++.+.+|+.
T Consensus 78 V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 78 IIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred EEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC
Confidence 33455555 443 3666777889988883 332111 011110 1112345566676665545777788899999986
Q ss_pred CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 542 EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 542 ~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
+|...-... .....+....++.||.. |+.++.++.|.+|+..+|+.+..+...... ........ - ++.
T Consensus 157 tg~~~~~l~---~h~~~V~sla~spdG~l-Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~-~~~~~~w~-~------~~~ 224 (493)
T PTZ00421 157 RGKAVEVIK---CHSDQITSLEWNLDGSL-LCTTSKDKKLNIIDPRDGTIVSSVEAHASA-KSQRCLWA-K------RKD 224 (493)
T ss_pred CCeEEEEEc---CCCCceEEEEEECCCCE-EEEecCCCEEEEEECCCCcEEEEEecCCCC-cceEEEEc-C------CCC
Confidence 454332221 11223444556667753 566677899999998888765433221111 11111111 1 112
Q ss_pred eEEEEEe----cCCeEEEEcCCCCceE--EEEeCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 622 LTIVTTS----FDGYLYLIDGPTSCAD--VVDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 622 ~DLvv~s----~dG~ly~~dg~~g~~~--~i~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
. ++++. .++.+.++|....... ....... +.....-++.||.. |++++ .+|.|.+|+...
T Consensus 225 ~-ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~--~~~~~~~~d~d~~~-L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 225 L-IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS--SALFIPFFDEDTNL-LYIGSKGEGNIRCFELMN 291 (493)
T ss_pred e-EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC--CceEEEEEcCCCCE-EEEEEeCCCeEEEEEeeC
Confidence 2 33322 3567777775542211 1111111 11222236677764 44444 589999998753
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=90.34 E-value=14 Score=41.61 Aligned_cols=135 Identities=21% Similarity=0.292 Sum_probs=85.0
Q ss_pred eEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce--
Q 003012 434 AIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI-- 510 (857)
Q Consensus 434 ~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i-- 510 (857)
..+.|+..+|+ |...+. ++ --+++.++|..||- =|+.|.-+|.|.++. .+|...|........+
T Consensus 87 ~AflW~~~~ge--~~~elt---------gH-KDSVt~~~Fshdgt-lLATGdmsG~v~v~~~stg~~~~~~~~e~~dieW 153 (399)
T KOG0296|consen 87 LAFLWDISTGE--FAGELT---------GH-KDSVTCCSFSHDGT-LLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEW 153 (399)
T ss_pred eEEEEEccCCc--ceeEec---------CC-CCceEEEEEccCce-EEEecCCCccEEEEEcccCceEEEeecccCceEE
Confidence 35667777777 443332 12 23578888999985 244555678898888 5777776553222221
Q ss_pred --eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 511 --QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 511 --~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
++ + .++ -+++++.+|.+++|...-+..=+ -. .........|+|-+||+. ++.+..+|.|.+|+.++
T Consensus 154 l~WH-p-~a~-------illAG~~DGsvWmw~ip~~~~~k-v~-~Gh~~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~kt 221 (399)
T KOG0296|consen 154 LKWH-P-RAH-------ILLAGSTDGSVWMWQIPSQALCK-VM-SGHNSPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKT 221 (399)
T ss_pred EEec-c-ccc-------EEEeecCCCcEEEEECCCcceee-Ee-cCCCCCcccccccCCCce-EEEEecCceEEEEecCC
Confidence 12 1 222 35667788999999753321111 11 123456678999999874 77788899999999999
Q ss_pred CCeec
Q 003012 589 GSKVR 593 (857)
Q Consensus 589 G~~~~ 593 (857)
|..+-
T Consensus 222 g~p~~ 226 (399)
T KOG0296|consen 222 GQPLH 226 (399)
T ss_pred CceeE
Confidence 97753
No 39
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=89.87 E-value=3.2 Score=46.83 Aligned_cols=94 Identities=28% Similarity=0.336 Sum_probs=51.8
Q ss_pred ccccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCC-CceEEEEeccCCCCcccc
Q 003012 382 HILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDT-KQVKWTTDLDLSTDNASF 460 (857)
Q Consensus 382 ~i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~t-G~i~W~~~l~ls~~~~~~ 460 (857)
..++.|+++-++ +|..=+|++..|.... ..+ ..-...|+++|+++ |+..|.......
T Consensus 146 ~t~s~P~I~~~~-~g~w~~i~g~Gy~~~~--~~~-------------~~~~~~lyi~d~~t~G~l~~~i~~~~~------ 203 (335)
T PF05567_consen 146 QTWSKPQIAKVK-NGKWVVIFGSGYNSDD--VDS-------------SSGGAALYILDADTTGALIKKIDVPGG------ 203 (335)
T ss_dssp B--S--EEEEET-TSSEEEEEE--BS-TT----------------------EEEEEEETTT---EEEEEEE--S------
T ss_pred ccccCCEEEEcc-CCcEEEEEccCCCCCc--ccc-------------cCCCcEEEEEECCCCCceEEEEecCCC------
Confidence 456789998886 6776666665542110 000 00125699999999 999888665322
Q ss_pred ccccccccEEEecCCCCCccEEEE-eeCCeEEEEeCCCc
Q 003012 461 RAYIYSSPTVVDLDGDGNLDILVG-TSFGLFYVLDHHGK 498 (857)
Q Consensus 461 ~~~~~sspavaDlDGDG~~DIvVg-~~~G~Lyv~~~dG~ 498 (857)
....+.|+++|.|+||..|.+.+ ...|+||-++-.+.
T Consensus 204 -~~gl~~~~~~D~d~DG~~D~vYaGDl~GnlwR~dl~~~ 241 (335)
T PF05567_consen 204 -SGGLSSPAVVDSDGDGYVDRVYAGDLGGNLWRFDLSSA 241 (335)
T ss_dssp -TT-EEEEEEE-TTSSSEE-EEEEEETTSEEEEEE--TT
T ss_pred -CccccccEEEeccCCCeEEEEEEEcCCCcEEEEECCCC
Confidence 11456789999999999997655 45789998885443
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.74 E-value=32 Score=36.94 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=100.4
Q ss_pred eCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEec
Q 003012 486 SFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDV 564 (857)
Q Consensus 486 ~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDl 564 (857)
.+..+++|+ ++|+....|.-. ..++...-||.+- .-++-++.+..+.+|+-.-...-+.++-.....++.-.|+
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v 153 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV 153 (307)
T ss_pred CCceEEEEEcccCeeeeecccc----cceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe
Confidence 344688888 799877666443 2344555566543 2344556677888886522211111222223344555666
Q ss_pred CCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE
Q 003012 565 DGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD 644 (857)
Q Consensus 565 DGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~ 644 (857)
++ -+|+.++.+|.+..|+-..|+... ..+..|+...-+.. ||. -+++++.++.+.++|..+|...
T Consensus 154 ~~---heIvaGS~DGtvRtydiR~G~l~s-------Dy~g~pit~vs~s~----d~n-c~La~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 154 AE---HEIVAGSVDGTVRTYDIRKGTLSS-------DYFGHPITSVSFSK----DGN-CSLASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred cc---cEEEeeccCCcEEEEEeecceeeh-------hhcCCcceeEEecC----CCC-EEEEeeccceeeecccchhHHH
Confidence 43 478889999999999887776542 23445555555543 333 3457778889999998887654
Q ss_pred EEEeCCcceee-EEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 645 VVDIGETSYSM-VLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 645 ~i~~g~~~~s~-~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
..-.|...... .... ++. -..-++-++.+|.||.|+.
T Consensus 219 ~sYkGhkn~eykldc~-l~q-sdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 219 KSYKGHKNMEYKLDCC-LNQ-SDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred HHhcccccceeeeeee-ecc-cceeEEeccCCceEEEEEe
Confidence 32222221110 0000 111 1223455689999999997
No 41
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=89.53 E-value=13 Score=40.35 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCCeEEEEEecCCeEEEEcCCCCceE-EEEeCCcceeeEEEEeec-CCCCccEEEEecCCcEEEEe
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVD-GGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g~~~-~i~~g~~~~s~~~a~DlD-GDG~~DLvv~t~~G~V~~~~ 682 (857)
+.-.-+|++++.|.+|+++..+-... ...+...+......+-+| .|.+ |+|++.+|.||.++
T Consensus 193 ~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyR--I~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 193 DAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYR--IVVACRDGKIYTIR 256 (257)
T ss_pred CCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceE--EEEEeCCCEEEEEe
Confidence 45556899999999999997753322 344444444445566665 6654 99999999999875
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=89.35 E-value=64 Score=40.60 Aligned_cols=198 Identities=13% Similarity=0.157 Sum_probs=105.4
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCcee----eeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-C
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIR----EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~----~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~ 542 (857)
.....++.||.. ++.++.++.|.+|+...... ...+...-.....+....++.....-|+.++.++.+.+|+. +
T Consensus 486 V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~ 564 (793)
T PLN00181 486 VCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR 564 (793)
T ss_pred EEEEEECCCCCE-EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence 455678888853 55667788888887432110 01111100001123333444333335777888899999986 4
Q ss_pred CCeeEEEccccccccCCEEEecCC-CCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 543 GKGIWEQHLKSLVTQGPSIGDVDG-DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 543 G~~~W~~~~~~~~~~~vavgDlDG-DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
++....... ....+.-.+++. ||. -|+.++.++.+.+|+-.++..+..+.. . ..+....+.. +..
T Consensus 565 ~~~~~~~~~---H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~~~~~~~~--~----~~v~~v~~~~----~~g 630 (793)
T PLN00181 565 SQLVTEMKE---HEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGVSIGTIKT--K----ANICCVQFPS----ESG 630 (793)
T ss_pred CeEEEEecC---CCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCcEEEEEec--C----CCeEEEEEeC----CCC
Confidence 444433221 122334445542 432 256667789999999877765433221 1 1233334421 223
Q ss_pred eEEEEEecCCeEEEEcCCCCceEEEE-eCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 622 LTIVTTSFDGYLYLIDGPTSCADVVD-IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 622 ~DLvv~s~dG~ly~~dg~~g~~~~i~-~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
.-+++++.+|.+++++.......... .+.. ..+....+. |+. -|+.++.++.|.+|+..
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~--~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHS--KTVSYVRFV-DSS-TLVSSSTDNTLKLWDLS 690 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCC--CCEEEEEEe-CCC-EEEEEECCCEEEEEeCC
Confidence 45788889999999987654321111 1111 112222233 333 37778899999999874
No 43
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.29 E-value=16 Score=42.22 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=107.5
Q ss_pred CCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC----CCeeEE
Q 003012 474 DGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE----GKGIWE 548 (857)
Q Consensus 474 DGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~----G~~~W~ 548 (857)
+++|. =++.++..|.||++. .+|..+..+... +.++.+.-|-+||.. |+.++.+|.+.+|.-. -.....
T Consensus 90 ~n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aH----YQ~ITcL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 90 SNLGY-FLLAGTISGNLYLWELSSGILLNVLSAH----YQSITCLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred CCCce-EEEeecccCcEEEEEeccccHHHHHHhh----ccceeEEEEeCCCcE-EEecCCCccEEEEEEEeecccccCCC
Confidence 44553 234444788999988 788876444222 334555566667743 6667788998888541 111100
Q ss_pred E-ccccccccCCEEEecC-CC--CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 549 Q-HLKSLVTQGPSIGDVD-GD--GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 549 ~-~~~~~~~~~vavgDlD-GD--G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
. .......+...+.|+- |- -..-|+.++.+..+-+|+-..|..+....+ ..++...-+| ...--+
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f------p~si~av~lD-----pae~~~ 232 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF------PSSIKAVALD-----PAERVV 232 (476)
T ss_pred ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec------CCcceeEEEc-----ccccEE
Confidence 0 0001122344555542 11 234466666777888888877876643222 1223222232 234678
Q ss_pred EEEecCCeEEEEcCC--CCceE--------------EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 625 VTTSFDGYLYLIDGP--TSCAD--------------VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 625 vv~s~dG~ly~~dg~--~g~~~--------------~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
|+++.+|.+|.++-. .++.. ..-.|....+.+..--++-||.+ |+.++.+|.|.+|+..+
T Consensus 233 yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl-LlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 233 YIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL-LLSGDEDGKVCVWDIYS 308 (476)
T ss_pred EecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE-EEeeCCCCCEEEEecch
Confidence 999999988876422 11111 11123222223333346778876 77889999999999865
No 44
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=89.22 E-value=16 Score=42.31 Aligned_cols=189 Identities=14% Similarity=0.193 Sum_probs=104.4
Q ss_pred CccEEEEeeCCeEEEEeCCCceeeeee-eeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccccc
Q 003012 478 NLDILVGTSFGLFYVLDHHGKIREKFP-LEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV 555 (857)
Q Consensus 478 ~~DIvVg~~~G~Lyv~~~dG~~~~~~~-~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~ 555 (857)
.+=+++++.++.+-+|.-+|+.....+ +..- ...+..+-|--+|..-|++++....+|.|+. +++..--....+.-
T Consensus 225 ~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e 302 (514)
T KOG2055|consen 225 APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVE 302 (514)
T ss_pred CceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcc
Confidence 345677777887777777777543211 1110 0112222233378778888888888888876 33332111111111
Q ss_pred ccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEE
Q 003012 556 TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYL 635 (857)
Q Consensus 556 ~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~ 635 (857)
-.++...-+-.|+. =|++...+|.|+++...++..+..+.+ .|.+.. +.+ . .|| ..|++.+.+|.+|+
T Consensus 303 ~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~Ki--eG~v~~-~~f---s----Sds-k~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 303 EKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKI--EGVVSD-FTF---S----SDS-KELLASGGTGEVYV 370 (514)
T ss_pred cchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeee--ccEEee-EEE---e----cCC-cEEEEEcCCceEEE
Confidence 12223333334444 366667789999999888877655433 332222 111 1 244 56777788899999
Q ss_pred EcCCCCc-eE-EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 636 IDGPTSC-AD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 636 ~dg~~g~-~~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
++-.... .. |.+.|.-.-.+... -+|++ =+.+++..|-|-+|+..
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~-S~ng~---ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCI-SLNGS---YLATGSDSGIVNIYDGN 417 (514)
T ss_pred EecCCcceEEEEeecCccceeeeee-cCCCc---eEEeccCcceEEEeccc
Confidence 9865543 32 34444332222332 35555 36667888988888853
No 45
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=89.21 E-value=32 Score=36.20 Aligned_cols=220 Identities=20% Similarity=0.271 Sum_probs=108.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEe-eCCeEEEEeC-CCceeeeeeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT-SFGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~-~~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
+.+..+|..+++........ ..+....++.||.. +++.+ .++.+++++- +++.+..++..
T Consensus 53 ~~v~~~d~~~~~~~~~~~~~-------------~~~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~~---- 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLPSG-------------PDPELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPVG---- 114 (300)
T ss_pred CeEEEEECCCCcEEEeccCC-------------CCccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeCC----
Confidence 56888898887764322110 11334557777763 44443 4678888884 44433333211
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCc-EEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCCcEEEEECCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGN-VAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGKD 588 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~-l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~l~~~~ 588 (857)
..+...-+..||.. ++++...+. +..|+........... ....+....++.||.. ++++. .++.++.|+..+
T Consensus 115 -~~~~~~~~~~dg~~-l~~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~-l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 115 -VEPEGMAVSPDGKI-VVNTSETTNMAHFIDTKTYEIVDNVL---VDQRPRFAEFTADGKE-LWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred -CCcceEEECCCCCE-EEEEecCCCeEEEEeCCCCeEEEEEE---cCCCccEEEECCCCCE-EEEEcCCCCEEEEEEcCc
Confidence 11223445667754 334433333 4455543222221111 1112333456667753 44444 478899999887
Q ss_pred CCeecccccccCCccc--cceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCC
Q 003012 589 GSKVRPYPYRTHGRVM--NQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGD 665 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~--s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG 665 (857)
++....+.....+... ..+.-.-++ .||..-++....++.+++++..++.... +..+.. +....+..||
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s----~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~~g 260 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLT----KDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQR----VWQLAFTPDE 260 (300)
T ss_pred ceeeeeeeecccccccccCCccceEEC----CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCC----cceEEECCCC
Confidence 7665433322111000 001111133 2333323333445678888876654432 222322 2223477777
Q ss_pred CccEEEE-ecCCcEEEEeCCC
Q 003012 666 DLDLIVT-TMNGNVFCFSTPA 685 (857)
Q Consensus 666 ~~DLvv~-t~~G~V~~~~~~~ 685 (857)
.. |+++ ..+|.|.+|+..+
T Consensus 261 ~~-l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 261 KY-LLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CE-EEEEcCCCCeEEEEECCC
Confidence 63 5555 3578999999754
No 46
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.45 E-value=72 Score=39.34 Aligned_cols=194 Identities=20% Similarity=0.247 Sum_probs=109.7
Q ss_pred cccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCC
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK 544 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~ 544 (857)
...+..++-.||. -|+.|+.+|+|-+++ ..|--.-.|.-. ++.+++.-+-..|. -++..+-+|.+.+|+..--
T Consensus 351 ~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~SgfC~vTFteH----ts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 351 DRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGFCFVTFTEH----TSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred cceeeEEECCCCc-EEEeccCCCcEEEEeccCceEEEEeccC----CCceEEEEEEecCC-EEEEeecCCeEEeeeeccc
Confidence 4566778888885 466777889998888 455444344433 23344444444553 3556667899999987554
Q ss_pred eeEEEcc-ccccccCCEEEecCCCCcccEEEEec--CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 545 GIWEQHL-KSLVTQGPSIGDVDGDGHSDVVVPTL--SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 545 ~~W~~~~-~~~~~~~vavgDlDGDG~~DLvv~t~--~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
..|..-+ +..+.-+-...| -.-||+++.. .-.|++|.-++|+.+.-..-. . .|+.-.-++. +|
T Consensus 425 rNfRTft~P~p~QfscvavD----~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH-E----gPVs~l~f~~----~~- 490 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVD----PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH-E----GPVSGLSFSP----DG- 490 (893)
T ss_pred ceeeeecCCCceeeeEEEEc----CCCCEEEeeccceEEEEEEEeecCeeeehhcCC-C----CcceeeEEcc----cc-
Confidence 4454322 222211112222 2235666654 237899999999876432111 1 1222112221 11
Q ss_pred eEEEEEecCCeEEEEc--CCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 622 LTIVTTSFDGYLYLID--GPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 622 ~DLvv~s~dG~ly~~d--g~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
.-|+.++.|..+-+++ ...+..+.+.+. +.+...-|-.||+ +|.|++.+|.+..|+..
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vEtl~i~----sdvl~vsfrPdG~-elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVETLEIR----SDVLAVSFRPDGK-ELAVATLDGQITFFDIK 550 (893)
T ss_pred CeEEeccccceEEEEEeeccCceeeeEeec----cceeEEEEcCCCC-eEEEEEecceEEEEEhh
Confidence 2567777777554443 333444444332 2333344677775 79999999999999874
No 47
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=88.27 E-value=18 Score=42.07 Aligned_cols=93 Identities=23% Similarity=0.361 Sum_probs=65.5
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
.+..+-.||.+||+.+-..+++ ..|..+-+..|+...+++|..+++|..++ ..|+++..+....+.
T Consensus 278 fD~~lKlwDtETG~~~~~f~~~-------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRFHLD-------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred cceeeeeeccccceEEEEEecC-------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh
Confidence 3466888999999987776553 34778889999988889999999999888 588877666555444
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~ 541 (857)
+. .+.+.| +|+- .+..+.++.+.+|+.
T Consensus 345 i~-~i~F~~---~g~r-FissSDdks~riWe~ 371 (503)
T KOG0282|consen 345 IL-DITFVD---EGRR-FISSSDDKSVRIWEN 371 (503)
T ss_pred ee-eeEEcc---CCce-EeeeccCccEEEEEc
Confidence 33 455555 3443 444455667777765
No 48
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=87.75 E-value=53 Score=39.83 Aligned_cols=188 Identities=15% Similarity=0.223 Sum_probs=106.7
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
..|.|.-||+.+++++...... ...+++ .++.+-+ ..+.|++.+|.++.+. +.+... +......
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~--------gg~IWs-iai~p~~----~~l~IgcddGvl~~~s~~p~~I~--~~r~l~r 152 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSN--------GGAIWS-IAINPEN----TILAIGCDDGVLYDFSIGPDKIT--YKRSLMR 152 (691)
T ss_pred CCceEEEEecccCceeEEecCC--------CcceeE-EEeCCcc----ceEEeecCCceEEEEecCCceEE--EEeeccc
Confidence 4578888999988887665431 122222 3444322 5788899999877777 455543 2222233
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEE--ccccccc--cCCEE--EecCCCCcccEEEEecCCcEE
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQ--HLKSLVT--QGPSI--GDVDGDGHSDVVVPTLSGNIY 582 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~--~~~~~~~--~~vav--gDlDGDG~~DLvv~t~~G~I~ 582 (857)
..+.+...+++.+|. -|+.|+.+|.+.+|+. .|...-.. ....... ..+.+ .=+ .|+ -|+.+...|.|-
T Consensus 153 q~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~--tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 153 QKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDS--TIASGDSAGTVT 228 (691)
T ss_pred ccceEEEEEecCCcc-EEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecC--cEEEecCCceEE
Confidence 345677788888874 4788888899999987 55554411 1111100 00111 111 222 255556689999
Q ss_pred EEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEE
Q 003012 583 VLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVD 647 (857)
Q Consensus 583 ~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~ 647 (857)
.|+...|+.+..+...... ...+++.| ...-++++..++.++.+...+...+|+.
T Consensus 229 FWd~~~gTLiqS~~~h~ad--Vl~Lav~~--------~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 229 FWDSIFGTLIQSHSCHDAD--VLALAVAD--------NEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred EEcccCcchhhhhhhhhcc--eeEEEEcC--------CCCeEEEccCCCceEEEEecCCccceee
Confidence 9999999887654433221 11122222 2245777788887777665554334543
No 49
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=87.65 E-value=12 Score=46.15 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=68.7
Q ss_pred cEEEEeeCCeEEEEe-CCCceeeeeeeecccee---ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccc
Q 003012 480 DILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ---GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL 554 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~---ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~ 554 (857)
-|++|...|++-+++ ..|+.+-.++.....++ .+|+ .| -+++|..+|.+.+|+- .++.+.+.+....
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa-LD-------VVaiG~~~G~ViifNlK~dkil~sFk~d~g 245 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA-LD-------VVAIGLENGTVIIFNLKFDKILMSFKQDWG 245 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc-ce-------EEEEeccCceEEEEEcccCcEEEEEEcccc
Confidence 578888889888888 68887766554432222 2232 23 2556678899999976 6777777665422
Q ss_pred cccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecc
Q 003012 555 VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRP 594 (857)
Q Consensus 555 ~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~ 594 (857)
.-..+++. -||.+=++.++.+|.+..|+-..-+.++.
T Consensus 246 ~VtslSFr---tDG~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 246 RVTSLSFR---TDGNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred ceeEEEec---cCCCeeEEeccCCceEEEEEcCCCeeeee
Confidence 22234444 48888888888889999998765444443
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=85.73 E-value=84 Score=37.27 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=112.1
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
+.|.+-.|++..+++.-... ++ .-+.+..-+..|| .-|+-++.+|.|.-++ ..|..-.-++. .
T Consensus 298 l~G~in~ln~~d~~~~~~i~-----------GH-nK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~---~ 361 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVIS-----------GH-NKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGK---G 361 (603)
T ss_pred cCcEEEEecccCCChhheec-----------cc-ccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccc---c
Confidence 45667777776655432211 11 1235566677788 5678888889876555 55542211111 0
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
-..++.-.. .....+++....+..+......+...=..... ..+..+...-.+.||. +++......|.+++..++
T Consensus 362 h~nqI~~~~--~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~-~lg~QP~~lav~~d~~--~avv~~~~~iv~l~~~~~ 436 (603)
T KOG0318|consen 362 HTNQIKGMA--ASESGELFTIGWDDTLRVISLKDNGYTKSEVV-KLGSQPKGLAVLSDGG--TAVVACISDIVLLQDQTK 436 (603)
T ss_pred ccceEEEEe--ecCCCcEEEEecCCeEEEEecccCccccccee-ecCCCceeEEEcCCCC--EEEEEecCcEEEEecCCc
Confidence 111222222 23344788888888887776533322111000 1111111222233332 444455667777775433
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc--eEEEEeCCcceeeEEEEeecCCCCc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC--ADVVDIGETSYSMVLADNVDGGDDL 667 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~--~~~i~~g~~~~s~~~a~DlDGDG~~ 667 (857)
-..-+ . .+..+....-. ...+++++..+|.++++.-.++. .+...+. ..+.+...-+-.||..
T Consensus 437 ~~~~~--~----~y~~s~vAv~~-------~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~--h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 437 VSSIP--I----GYESSAVAVSP-------DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE--HRAAITDVAYSPDGAY 501 (603)
T ss_pred ceeec--c----ccccceEEEcC-------CCCEEEEecccceEEEEEecCCcccceeeeec--ccCCceEEEECCCCcE
Confidence 32211 1 11222222322 23688999999977666544432 2211111 1111222224456653
Q ss_pred cEEEEecCCcEEEEeCCCCCCCcccce
Q 003012 668 DLIVTTMNGNVFCFSTPAPHHPLKAWR 694 (857)
Q Consensus 668 DLvv~t~~G~V~~~~~~~~~~pl~~W~ 694 (857)
|+++...+.+.+|+..+.+..++.|.
T Consensus 502 -la~~Da~rkvv~yd~~s~~~~~~~w~ 527 (603)
T KOG0318|consen 502 -LAAGDASRKVVLYDVASREVKTNRWA 527 (603)
T ss_pred -EEEeccCCcEEEEEcccCceecceee
Confidence 56667788999999877666666664
No 51
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=85.51 E-value=55 Score=38.58 Aligned_cols=136 Identities=19% Similarity=0.280 Sum_probs=82.4
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCcccc
Q 003012 526 ELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMN 605 (857)
Q Consensus 526 DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s 605 (857)
.++.+..++.+.+|+ +-+..|+..+.. ....+||+--| -|++++..|..++++..+-..+. ..+. ..
T Consensus 382 q~~T~gqdk~v~lW~-~~k~~wt~~~~d----~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~lv~---~~~d---~~ 448 (626)
T KOG2106|consen 382 QLLTCGQDKHVRLWN-DHKLEWTKIIED----PAECADFHPSG--VVAVGTATGRWFVLDTETQDLVT---IHTD---NE 448 (626)
T ss_pred heeeccCcceEEEcc-CCceeEEEEecC----ceeEeeccCcc--eEEEeeccceEEEEecccceeEE---EEec---CC
Confidence 455566677888887 667889876542 34567888877 57888889999999876533331 1222 35
Q ss_pred ceEEEeccCCCCCCCCeEEEEEecCCeEEEEc--CCCCceEEEEeCCcceeeEEEEeecCCCCccEEEE-ecCCcEEEEe
Q 003012 606 QVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID--GPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVT-TMNGNVFCFS 682 (857)
Q Consensus 606 ~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d--g~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~-t~~G~V~~~~ 682 (857)
++.++-++.| | .-+++++.++.+|++. ..+...... +.-.-+.+...|+--|+. .+++ +.+-.+..|.
T Consensus 449 ~ls~v~ysp~----G-~~lAvgs~d~~iyiy~Vs~~g~~y~r~--~k~~gs~ithLDwS~Ds~--~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 449 QLSVVRYSPD----G-AFLAVGSHDNHIYIYRVSANGRKYSRV--GKCSGSPITHLDWSSDSQ--FLVSNSGDYEILYWK 519 (626)
T ss_pred ceEEEEEcCC----C-CEEEEecCCCeEEEEEECCCCcEEEEe--eeecCceeEEeeecCCCc--eEEeccCceEEEEEc
Confidence 6666666643 2 4578899999777664 332222222 111114456667777775 4444 3444566674
Q ss_pred C
Q 003012 683 T 683 (857)
Q Consensus 683 ~ 683 (857)
+
T Consensus 520 ~ 520 (626)
T KOG2106|consen 520 P 520 (626)
T ss_pred c
Confidence 4
No 52
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=84.45 E-value=1.6 Score=33.15 Aligned_cols=38 Identities=39% Similarity=0.605 Sum_probs=22.5
Q ss_pred CceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC
Q 003012 443 KQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH 495 (857)
Q Consensus 443 G~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~ 495 (857)
|+++|+..+. ....++|++.| .-|++++.+|.||+++.
T Consensus 1 G~~~W~~~~~---------~~~~~~~~v~~------g~vyv~~~dg~l~ald~ 38 (40)
T PF13570_consen 1 GKVLWSYDTG---------GPIWSSPAVAG------GRVYVGTGDGNLYALDA 38 (40)
T ss_dssp S-EEEEEE-S---------S---S--EECT------SEEEEE-TTSEEEEEET
T ss_pred CceeEEEECC---------CCcCcCCEEEC------CEEEEEcCCCEEEEEeC
Confidence 6789998764 34556777764 24778888999999874
No 53
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=84.41 E-value=37 Score=41.07 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=64.9
Q ss_pred cEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCC
Q 003012 571 DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE 650 (857)
Q Consensus 571 DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~ 650 (857)
.|+-...+|.|.-|+..+++.... ....|...=++++. +-.-.+.+++.+|.+|.+.+..+.......-.
T Consensus 82 RLFS~g~sg~i~EwDl~~lk~~~~--~d~~gg~IWsiai~--------p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLKQKYN--IDSNGGAIWSIAIN--------PENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred eEEeecCCceEEEEecccCceeEE--ecCCCcceeEEEeC--------CccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 466666778888888777765432 11122111122222 23357889999999999988776655432222
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
.--+.+.-.+++.+|. -|+.++.+|.+.+|+..++
T Consensus 152 rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSG 186 (691)
T ss_pred cccceEEEEEecCCcc-EEEecccCceEEEEEcCCC
Confidence 2223355556777774 3788899999999998543
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=84.19 E-value=22 Score=41.43 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=109.9
Q ss_pred EEEeeCCeEEEEe--CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccC
Q 003012 482 LVGTSFGLFYVLD--HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQG 558 (857)
Q Consensus 482 vVg~~~G~Lyv~~--~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~ 558 (857)
+-++.++.|++++ .++..+..|..... .+..+-++.+|. -++.++.+..+.+|+. +|......+... .
T Consensus 231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k----~Vrd~~~s~~g~-~fLS~sfD~~lKlwDtETG~~~~~f~~~~----~ 301 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRK----PVRDASFNNCGT-SFLSASFDRFLKLWDTETGQVLSRFHLDK----V 301 (503)
T ss_pred EecCCCceEEEEEEecCcceehhhhcchh----hhhhhhccccCC-eeeeeecceeeeeeccccceEEEEEecCC----C
Confidence 3344567788777 45666555443311 123334567774 5677778899999986 888776655432 3
Q ss_pred CEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcC
Q 003012 559 PSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDG 638 (857)
Q Consensus 559 vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg 638 (857)
+...-+.-|+...++++..++.|..|+-.+|+++..|....+ ....+.+.|.+ ...+..+.++.+.+++.
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--~i~~i~F~~~g--------~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--AILDITFVDEG--------RRFISSSDDKSVRIWEN 371 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh--heeeeEEccCC--------ceEeeeccCccEEEEEc
Confidence 355667777766788888999999999999988766543322 12334454433 34556666776666654
Q ss_pred CCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 639 PTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 639 ~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
...-..........++++.+. +--.|. =++.-+++..+++|+...+
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~-~~P~~~-~~~aQs~dN~i~ifs~~~~ 417 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLT-LHPNGK-WFAAQSMDNYIAIFSTVPP 417 (503)
T ss_pred CCCccchhhcchhhccCccee-cCCCCC-eehhhccCceEEEEecccc
Confidence 433221111222345555554 333332 1444578889999997554
No 55
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=83.98 E-value=78 Score=38.41 Aligned_cols=236 Identities=17% Similarity=0.139 Sum_probs=120.6
Q ss_pred CceEEEEeccCCCCccc-cccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc-eece------
Q 003012 443 KQVKWTTDLDLSTDNAS-FRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE-IQGA------ 513 (857)
Q Consensus 443 G~i~W~~~l~ls~~~~~-~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~-i~ss------ 513 (857)
-++.|+.+..-...... .......+|...+ .-|++++...++++++ .+|+.+|.+...... ...+
T Consensus 184 L~~AWty~TGD~k~~~d~~e~t~e~tPLkvg------dtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrg 257 (773)
T COG4993 184 LQVAWTYRTGDVKQPEDPGETTNEVTPLKVG------DTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRG 257 (773)
T ss_pred cceeEEEecCcccCCCCcccccccccceEEC------CEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccc
Confidence 46778776532221111 1111223555543 2577888888999999 589999987655321 1100
Q ss_pred eEE-Eeec---CCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccccc----------------ccCCEEEecCCCCcccE
Q 003012 514 VVA-ADIN---DDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV----------------TQGPSIGDVDGDGHSDV 572 (857)
Q Consensus 514 ~~v-aD~D---GDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~----------------~~~vavgDlDGDG~~DL 572 (857)
+.- ++.. .-...-|++...+..+.+++. +|+..|++...+.. .+.+.++ ..-+
T Consensus 258 Vsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~------~~~~ 331 (773)
T COG4993 258 VSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFG------VKGI 331 (773)
T ss_pred eecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCccc------ceeE
Confidence 111 1111 111224677777888999986 89998886433211 1112222 1123
Q ss_pred EEEec----------CCcEEEEECCCCCeecccccccC--------C-----ccccceEEEeccCCCCCCCCeEEEEEec
Q 003012 573 VVPTL----------SGNIYVLSGKDGSKVRPYPYRTH--------G-----RVMNQVLLVDLTKRGEKSKGLTIVTTSF 629 (857)
Q Consensus 573 vv~t~----------~G~I~~l~~~~G~~~~~~~~~~~--------g-----~~~s~~~v~DlDgDg~gDG~~DLvv~s~ 629 (857)
+++.. +|.+..++-.+|+.+|.|..... + +..++-...-+|. +..-|++...
T Consensus 332 v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~-----~lnlVy~p~G 406 (773)
T COG4993 332 VIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTRNSPNSWASASYDA-----KLNLVYVPMG 406 (773)
T ss_pred EEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCCCCCCCceeecCCCCcccccccCC-----CCCeEEEeCC
Confidence 33321 34455555556666665432211 0 0011111222221 1111222211
Q ss_pred ------------------CCeEEEEcCCCCceEEEEeCC--c-----ceeeEEEEeecCCCCc--cEEEEecCCcEEEEe
Q 003012 630 ------------------DGYLYLIDGPTSCADVVDIGE--T-----SYSMVLADNVDGGDDL--DLIVTTMNGNVFCFS 682 (857)
Q Consensus 630 ------------------dG~ly~~dg~~g~~~~i~~g~--~-----~~s~~~a~DlDGDG~~--DLvv~t~~G~V~~~~ 682 (857)
...+..+|..+|..+|+.... . .-+.+.+.|+--||+. -|+..+.+|.+|+++
T Consensus 407 n~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlD 486 (773)
T COG4993 407 NQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLD 486 (773)
T ss_pred CCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhcccCCCCceEEEeecCCcEeeeeecccccCcEEEEE
Confidence 124667888888888854321 1 1234778899888864 355568899999998
Q ss_pred CCC-------CCCCccccee
Q 003012 683 TPA-------PHHPLKAWRS 695 (857)
Q Consensus 683 ~~~-------~~~pl~~W~s 695 (857)
..+ ++.|...|..
T Consensus 487 RrtGe~lv~~~evp~p~gA~ 506 (773)
T COG4993 487 RRTGELLVPIPEVPVPQGAI 506 (773)
T ss_pred cCCCcccccccccCCccccc
Confidence 743 2455555544
No 56
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=83.01 E-value=65 Score=33.81 Aligned_cols=219 Identities=17% Similarity=0.149 Sum_probs=105.8
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
.+.+.++|..+++........ ..+....++.||..=++.+..++.+++++. +|+....++.. .
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~-------------~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~- 73 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVG-------------QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG--P- 73 (300)
T ss_pred CCEEEEEECCCCceEEEEECC-------------CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC--C-
Confidence 367899999888765443221 112234566777542233445678888884 56554333221 1
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEecCC-CeeEEEccccccccCCEEEecCCCCcccEEEEecCC-cEEEEECCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTAEG-KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSG-NIYVLSGKD 588 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G-~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G-~I~~l~~~~ 588 (857)
.+....++.||..=++.+..++.+.+|+... ......... ..+.-.-++.||.. ++++..++ .+++++..+
T Consensus 74 --~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~dg~~-l~~~~~~~~~~~~~d~~~ 146 (300)
T TIGR03866 74 --DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG----VEPEGMAVSPDGKI-VVNTSETTNMAHFIDTKT 146 (300)
T ss_pred --CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC----CCcceEEECCCCCE-EEEEecCCCeEEEEeCCC
Confidence 1233456777764333334467888888643 333222211 11222345566653 34443333 456667655
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-EEEEeCCcc---e-eeEEEEeecC
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVDIGETS---Y-SMVLADNVDG 663 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~-~~i~~g~~~---~-s~~~a~DlDG 663 (857)
++....... . ..+....++ .||..-++.+..++.+++++..++.. ..+...... . ..+...-++.
T Consensus 147 ~~~~~~~~~--~----~~~~~~~~s----~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 147 YEIVDNVLV--D----QRPRFAEFT----ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred CeEEEEEEc--C----CCccEEEEC----CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC
Confidence 554322111 1 111222333 23433233334578888888776533 222211100 0 0121223677
Q ss_pred CCCccEEEE-ecCCcEEEEeCC
Q 003012 664 GDDLDLIVT-TMNGNVFCFSTP 684 (857)
Q Consensus 664 DG~~DLvv~-t~~G~V~~~~~~ 684 (857)
||+. ++++ ..++.+.+|+..
T Consensus 217 dg~~-~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 217 DGKT-AFVALGPANRVAVVDAK 237 (300)
T ss_pred CCCE-EEEEcCCCCeEEEEECC
Confidence 7764 3343 445678888753
No 57
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=82.59 E-value=51 Score=38.40 Aligned_cols=158 Identities=14% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccc-cccCC
Q 003012 523 GKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYP-YRTHG 601 (857)
Q Consensus 523 G~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~-~~~~g 601 (857)
+.+-++++..++.+.+|.-+|+..-..+-.......+.-+-|--+|..-|++++..-.+|.|+-.+++...--+ ....-
T Consensus 224 ~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~ 303 (514)
T KOG2055|consen 224 TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEE 303 (514)
T ss_pred CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCccc
Confidence 44567778888899999888865421110001111122222333677667777777788888877766532111 11111
Q ss_pred ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE-EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEE
Q 003012 602 RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFC 680 (857)
Q Consensus 602 ~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~ 680 (857)
.......+... + .-|++....|+++++..+++... .+.+.+. +...=|..|| -.|++.+.+|.||+
T Consensus 304 ~~~e~FeVShd-------~-~fia~~G~~G~I~lLhakT~eli~s~KieG~----v~~~~fsSds-k~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 304 KSMERFEVSHD-------S-NFIAIAGNNGHIHLLHAKTKELITSFKIEGV----VSDFTFSSDS-KELLASGGTGEVYV 370 (514)
T ss_pred chhheeEecCC-------C-CeEEEcccCceEEeehhhhhhhhheeeeccE----EeeEEEecCC-cEEEEEcCCceEEE
Confidence 11112222211 1 24666677788888887765332 2223222 1111245788 45788888999999
Q ss_pred EeCCCCCCCcccce
Q 003012 681 FSTPAPHHPLKAWR 694 (857)
Q Consensus 681 ~~~~~~~~pl~~W~ 694 (857)
|+.+.+ +-+..|.
T Consensus 371 ~nl~~~-~~~~rf~ 383 (514)
T KOG2055|consen 371 WNLRQN-SCLHRFV 383 (514)
T ss_pred EecCCc-ceEEEEe
Confidence 998654 3334443
No 58
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=82.55 E-value=2.4 Score=32.07 Aligned_cols=38 Identities=21% Similarity=0.459 Sum_probs=24.7
Q ss_pred ceeEEeecCceeecCceEEecCCCCceeEEEcCcceEEEEEECC
Q 003012 63 ELRWQTEVSSSIYATPLIADINSDGKLDIVVPSFLHYLEVLEGS 106 (857)
Q Consensus 63 ~l~w~~~~~ssv~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~ 106 (857)
+++|+.+++..+.++|.++ +|+ |+|.+..+.|-+|+=+
T Consensus 2 ~~~W~~~~~~~~~~~~~v~----~g~--vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAVA----GGR--VYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EEEEEE-SS---S--EEC----TSE--EEEE-TTSEEEEEETT
T ss_pred ceeEEEECCCCcCcCCEEE----CCE--EEEEcCCCEEEEEeCC
Confidence 4799999999999999887 354 8889999999998743
No 59
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=82.41 E-value=27 Score=39.45 Aligned_cols=81 Identities=20% Similarity=0.369 Sum_probs=47.4
Q ss_pred cccccccEEEecCCCCCccEEEEee----C-------CeEEEEe-CC-Cceeeeeeeecc-ceeceeEEEeecCCCCeEE
Q 003012 462 AYIYSSPTVVDLDGDGNLDILVGTS----F-------GLFYVLD-HH-GKIREKFPLEMA-EIQGAVVAADINDDGKIEL 527 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~DIvVg~~----~-------G~Lyv~~-~d-G~~~~~~~~~~g-~i~ss~~vaD~DGDG~~DL 527 (857)
++.++.|.++-++ +|+.-+|+++. . ..||+++ .+ |..++.+....+ ...+.+.+.|.|+||..|.
T Consensus 145 G~t~s~P~I~~~~-~g~w~~i~g~Gy~~~~~~~~~~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~ 223 (335)
T PF05567_consen 145 GQTWSKPQIAKVK-NGKWVVIFGSGYNSDDVDSSSGGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDR 223 (335)
T ss_dssp -B--S--EEEEET-TSSEEEEEE--BS-TT-------EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-E
T ss_pred CccccCCEEEEcc-CCcEEEEEccCCCCCcccccCCCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEE
Confidence 5667889999886 67766777643 1 2589999 56 888876655431 2345688999999999996
Q ss_pred EE-EeCCCcEEEEecCC
Q 003012 528 VT-TDTHGNVAAWTAEG 543 (857)
Q Consensus 528 vv-~~~~G~l~~~~~~G 543 (857)
+. ++..|+++-++.++
T Consensus 224 vYaGDl~GnlwR~dl~~ 240 (335)
T PF05567_consen 224 VYAGDLGGNLWRFDLSS 240 (335)
T ss_dssp EEEEETTSEEEEEE--T
T ss_pred EEEEcCCCcEEEEECCC
Confidence 55 46678888887643
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=82.09 E-value=32 Score=38.27 Aligned_cols=233 Identities=15% Similarity=0.235 Sum_probs=114.6
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
++|-+-+||.-+|+++-.-.. ..+ .++ .-.-......+|-.|..+ +..|+.+|.|-++. .+|.-+..|...
T Consensus 233 vDGFiEVWny~~GKlrKDLkY--QAq-d~f-MMmd~aVlci~FSRDsEM-lAsGsqDGkIKvWri~tG~ClRrFdrA--- 304 (508)
T KOG0275|consen 233 VDGFIEVWNYTTGKLRKDLKY--QAQ-DNF-MMMDDAVLCISFSRDSEM-LASGSQDGKIKVWRIETGQCLRRFDRA--- 304 (508)
T ss_pred ccceeeeehhccchhhhhhhh--hhh-cce-eecccceEEEeecccHHH-hhccCcCCcEEEEEEecchHHHHhhhh---
Confidence 346678888888876422111 000 011 011123445566666432 23345577777666 466655444422
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEe-cCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWT-AEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~-~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
-...+.+.-|-.|+. .|+-++.+-.+.+-. ..|+.+-+.+.-+. .+.-+-+..||. -|+.++.+|.+-+|..++
T Consensus 305 HtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfrGHsS---yvn~a~ft~dG~-~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 305 HTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFRGHSS---YVNEATFTDDGH-HIISASSDGTVKVWHGKT 379 (508)
T ss_pred hccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhcCccc---cccceEEcCCCC-eEEEecCCccEEEecCcc
Confidence 112344555555553 233333332222221 14544432222111 122234555675 477788899999999888
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
+.-+..|...........+.+.--| -..+++.+..+.+|+++-.+.-...+..|..--.-...+=+---|. =
T Consensus 380 teC~~Tfk~~~~d~~vnsv~~~PKn-------peh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGe-w 451 (508)
T KOG0275|consen 380 TECLSTFKPLGTDYPVNSVILLPKN-------PEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGE-W 451 (508)
T ss_pred hhhhhhccCCCCcccceeEEEcCCC-------CceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCc-E
Confidence 7765444322211111222232222 3567888888899998876654444433322111111111222222 2
Q ss_pred EEEEecCCcEEEEeCC
Q 003012 669 LIVTTMNGNVFCFSTP 684 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~~ 684 (857)
++....++.+|||...
T Consensus 452 iYcigED~vlYCF~~~ 467 (508)
T KOG0275|consen 452 IYCIGEDGVLYCFSVL 467 (508)
T ss_pred EEEEccCcEEEEEEee
Confidence 5566789999999874
No 61
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=81.54 E-value=8.1 Score=45.72 Aligned_cols=105 Identities=18% Similarity=0.273 Sum_probs=72.2
Q ss_pred ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-EEEEe
Q 003012 570 SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVDI 648 (857)
Q Consensus 570 ~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~-~~i~~ 648 (857)
-||+++.....+|.++-..|.++.+|.... ..+-++++|. -.--|++++.+|.+=++|...... ..++.
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~~~-----~~lN~v~in~-----~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFETDS-----GELNVVSINE-----EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccEEEeecCcceEEEEcccccccccccccc-----ccceeeeecC-----ccceEEecccCceEEEecchhhhhheeeec
Confidence 478888888899999999999987765543 3445566652 234467777789888888654221 11111
Q ss_pred --------CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 649 --------GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 649 --------g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+......+.+.-|++|| +++.|++.+|.++.|+...
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred ccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEccc
Confidence 22233346667788886 7899999999999998753
No 62
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=80.77 E-value=39 Score=40.35 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=68.4
Q ss_pred ccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCC-----eeEEEccc
Q 003012 479 LDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK-----GIWEQHLK 552 (857)
Q Consensus 479 ~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~-----~~W~~~~~ 552 (857)
-||+++.....||-++ ..|.++.++....+ .+-++++|.-- .=|++|..+|.+-+|+..-+ .--...+.
T Consensus 146 cDly~~gsg~evYRlNLEqGrfL~P~~~~~~----~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~ 220 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQGRFLNPFETDSG----ELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVN 220 (703)
T ss_pred ccEEEeecCcceEEEEccccccccccccccc----cceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccC
Confidence 4788888777899888 58988876665533 34455665422 12445555889999987222 21222221
Q ss_pred c----ccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCe
Q 003012 553 S----LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK 591 (857)
Q Consensus 553 ~----~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~ 591 (857)
+ ....+++..-|.+|| +++.|++.+|.++.|+-..-+.
T Consensus 221 s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP 262 (703)
T ss_pred CCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc
Confidence 1 122346667788886 6899999999999998754443
No 63
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=80.65 E-value=1.2e+02 Score=35.46 Aligned_cols=198 Identities=16% Similarity=0.231 Sum_probs=107.6
Q ss_pred ccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 467 spavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
..+..|.|+||. .|+.|..+|.+.+++.+|.....+....+ .+...-.|++|.. |+.++.++.+.+|+. +|..
T Consensus 237 dVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~l~~tl~~Hkg----PI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGT-LLATGSEDGEARIWNKDGNLISTLGQHKG----PIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCC-eEEEeecCcEEEEEecCchhhhhhhccCC----ceEEEEEcCCCCE-EEeccCCccEEEEeccCceE
Confidence 467889999995 68888999999999999986654433323 3455667888743 566677888889987 4543
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLv 625 (857)
.-.....+..+-.+.+. +...++....+|.|++++-..-.+.-.+. | -..++...-+| +-..-|.
T Consensus 311 ~q~f~~~s~~~lDVdW~-----~~~~F~ts~td~~i~V~kv~~~~P~~t~~----G-H~g~V~alk~n-----~tg~LLa 375 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQ-----SNDEFATSSTDGCIHVCKVGEDRPVKTFI----G-HHGEVNALKWN-----PTGSLLA 375 (524)
T ss_pred EEeeeeccCCccceEEe-----cCceEeecCCCceEEEEEecCCCcceeee----c-ccCceEEEEEC-----CCCceEE
Confidence 22222211111112222 23356666678888888753211221111 1 23455566665 2334566
Q ss_pred EEecCCeEEEEc-CCCCceEEEEe-CCcce----eeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 626 TTSFDGYLYLID-GPTSCADVVDI-GETSY----SMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 626 v~s~dG~ly~~d-g~~g~~~~i~~-g~~~~----s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.++.|+.+-+.. +.+++..-+.. ....| +..--++-|..-..=|+.+..++.|.+|+..+
T Consensus 376 S~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 376 SCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred EecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 777888777666 33333221100 00011 10011112222223355567788888888743
No 64
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=78.81 E-value=48 Score=40.32 Aligned_cols=184 Identities=19% Similarity=0.283 Sum_probs=99.5
Q ss_pred cccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~ 545 (857)
+..+..+.+.++. ++-++.+..+.++.. |+....++-....++ +++=|..+ .++.++.+..+.+|.. |+.
T Consensus 102 snVC~ls~~~~~~--~iSgSWD~TakvW~~-~~l~~~l~gH~asVW---Av~~l~e~---~~vTgsaDKtIklWk~-~~~ 171 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT--LISGSWDSTAKVWRI-GELVYSLQGHTASVW---AVASLPEN---TYVTGSADKTIKLWKG-GTL 171 (745)
T ss_pred cceeeeecCCcCc--eEecccccceEEecc-hhhhcccCCcchhee---eeeecCCC---cEEeccCcceeeeccC-Cch
Confidence 3466677777776 677777766555442 221111221112222 23333322 6777888888888866 332
Q ss_pred --eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeE
Q 003012 546 --IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623 (857)
Q Consensus 546 --~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~D 623 (857)
.|..+.. .-.++++-| ...++-++.+|.|..|.- +|..+..+.. ...+.-.+... + +..+
T Consensus 172 l~tf~gHtD--~VRgL~vl~-----~~~flScsNDg~Ir~w~~-~ge~l~~~~g--htn~vYsis~~-~-------~~~~ 233 (745)
T KOG0301|consen 172 LKTFSGHTD--CVRGLAVLD-----DSHFLSCSNDGSIRLWDL-DGEVLLEMHG--HTNFVYSISMA-L-------SDGL 233 (745)
T ss_pred hhhhccchh--heeeeEEec-----CCCeEeecCCceEEEEec-cCceeeeeec--cceEEEEEEec-C-------CCCe
Confidence 2443321 222334433 123666666777777776 5655432211 11111122111 1 2346
Q ss_pred EEEEecCCeEEEEcCCCCceEEEEeCC-cceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 624 IVTTSFDGYLYLIDGPTSCADVVDIGE-TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 624 Lvv~s~dG~ly~~dg~~g~~~~i~~g~-~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
|+.+.+|+.+-+++.. -+.+.+.... ..++.-.. .| .||++++.+|.|++|+..
T Consensus 234 Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~~L--~N----gDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAKVL--LN----GDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEecCCceEEEeecC-ceEEEEecCccceEEEEEe--eC----CCEEEeccCceEEEEEec
Confidence 8888899988887755 5666666554 33442222 12 479999999999999864
No 65
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=77.41 E-value=4.7 Score=30.34 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.3
Q ss_pred ccceEEEEECCCCceEEEEecc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLD 452 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ 452 (857)
..|.++++|.+||+++|+....
T Consensus 8 ~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 8 PDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp TTSEEEEEETTTTSEEEEEESS
T ss_pred CCCEEEEEECCCCCEEEeeeCC
Confidence 3488999999999999999864
No 66
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.35 E-value=2.3 Score=32.02 Aligned_cols=35 Identities=29% Similarity=0.454 Sum_probs=31.7
Q ss_pred EEEcCcceEEEEEECCCCCCCCCCccccCCceeecce
Q 003012 91 IVVPSFLHYLEVLEGSDGDKMPGWPAFHQSSVHSSPL 127 (857)
Q Consensus 91 i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~~~~sp~ 127 (857)
|+++++..+|-+|+-.+|+.+ |.+-.+..+.++|+
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~--W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVL--WKFQTGPPVDSSPI 37 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEE--EEEESSSGGGSCBE
T ss_pred EEEeCCCCEEEEEECCCCCEE--EeeeCCCCCccCcC
Confidence 788899999999999999999 99988888888876
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.30 E-value=56 Score=40.30 Aligned_cols=148 Identities=15% Similarity=0.227 Sum_probs=82.2
Q ss_pred EEEEEeCCCcEEEEecCCCee--EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCc-
Q 003012 526 ELVTTDTHGNVAAWTAEGKGI--WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGR- 602 (857)
Q Consensus 526 DLvv~~~~G~l~~~~~~G~~~--W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~- 602 (857)
=++-|+-++++.+|.-..... |. .... .++.+=+--||. -.||++.+|..+.|.-.+-++...+.+.....
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~-Dl~~----lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWN-DLRD----LITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cEeecccccceEEeecCcCeeEeeh-hhhh----hheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 355566678888886643322 43 2222 223344445564 37889999999999876555554444433211
Q ss_pred -ccc-ceEEEeccCCCCCCCCe-EEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEE
Q 003012 603 -VMN-QVLLVDLTKRGEKSKGL-TIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVF 679 (857)
Q Consensus 603 -~~s-~~~v~DlDgDg~gDG~~-DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~ 679 (857)
... .+.-.-+- .|.+ .|+|++.|..+-++++......-.--|....++..-+=|.-||+. ||.++.+..||
T Consensus 498 k~~~~rITG~Q~~-----p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~-IVs~seDs~VY 571 (712)
T KOG0283|consen 498 KKQGKRITGLQFF-----PGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH-IVSASEDSWVY 571 (712)
T ss_pred cccCceeeeeEec-----CCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE-EEEeecCceEE
Confidence 000 11111111 1223 489999999999999854322111011111222222336668875 88888999999
Q ss_pred EEeCCC
Q 003012 680 CFSTPA 685 (857)
Q Consensus 680 ~~~~~~ 685 (857)
+|+...
T Consensus 572 iW~~~~ 577 (712)
T KOG0283|consen 572 IWKNDS 577 (712)
T ss_pred EEeCCC
Confidence 999743
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=72.89 E-value=1.6e+02 Score=32.79 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=67.7
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEe--C-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCC
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLD--H-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGK 544 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~--~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~ 544 (857)
-++-+|..|.. ++++.....|..|+ . +..+...+.+.. +-.....-.-|-.||+. |++....+.+++++. +|.
T Consensus 144 pi~AfDp~GLi-fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~ 220 (311)
T KOG1446|consen 144 PIAAFDPEGLI-FALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT 220 (311)
T ss_pred cceeECCCCcE-EEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc
Confidence 34456777632 22333333566666 2 333443444442 11223344556789986 455556788888887 887
Q ss_pred eeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccc
Q 003012 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYP 596 (857)
Q Consensus 545 ~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~ 596 (857)
..............+.-+=+.-||.. |+.+..+|.|++|+..+|..+..+.
T Consensus 221 ~~~tfs~~~~~~~~~~~a~ftPds~F-vl~gs~dg~i~vw~~~tg~~v~~~~ 271 (311)
T KOG1446|consen 221 VKSTFSGYPNAGNLPLSATFTPDSKF-VLSGSDDGTIHVWNLETGKKVAVLR 271 (311)
T ss_pred EeeeEeeccCCCCcceeEEECCCCcE-EEEecCCCcEEEEEcCCCcEeeEec
Confidence 65443322111111122334455542 5556678999999999998765543
No 69
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=71.78 E-value=4.2 Score=33.57 Aligned_cols=30 Identities=43% Similarity=0.592 Sum_probs=22.6
Q ss_pred cccE-EEecCCCCCccEEEEee-------CCeEEEEeC
Q 003012 466 SSPT-VVDLDGDGNLDILVGTS-------FGLFYVLDH 495 (857)
Q Consensus 466 sspa-vaDlDGDG~~DIvVg~~-------~G~Lyv~~~ 495 (857)
.+.+ +.|+|+||..||+|+.. .|.+|++..
T Consensus 7 ~sv~~~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~ 44 (58)
T smart00191 7 YSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFG 44 (58)
T ss_pred hhheeccccCCCCccCEEEeCcccCCCCCCCEEEEEEe
Confidence 3455 79999999999999864 256676653
No 70
>smart00191 Int_alpha Integrin alpha (beta-propellor repeats). Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Alpha integrins are proposed to contain a domain containing a 7-fold repeat that adopts a beta-propellor fold. Some of these domains contain an inserted von Willebrand factor type-A domain. Some repeats contain putative calcium-binding sites. The 7-fold repeat domain is homologous to a similar domain in phosphatidylinositol-glycan-specific phospholipase D.
Probab=66.87 E-value=6.3 Score=32.56 Aligned_cols=32 Identities=38% Similarity=0.702 Sum_probs=24.1
Q ss_pred ccCCE-EEecCCCCcccEEEEec-------CCcEEEEECC
Q 003012 556 TQGPS-IGDVDGDGHSDVVVPTL-------SGNIYVLSGK 587 (857)
Q Consensus 556 ~~~va-vgDlDGDG~~DLvv~t~-------~G~I~~l~~~ 587 (857)
..+++ .+|+|+||..||+++.. .|.+|++...
T Consensus 6 G~sv~~~~d~ngDg~~dl~vGAP~~~~~~~~G~vy~~~~~ 45 (58)
T smart00191 6 GYSVAGVGDVNGDGYPDLLVGAPRANDAGETGAVYVYFGS 45 (58)
T ss_pred chhheeccccCCCCccCEEEeCcccCCCCCCCEEEEEEec
Confidence 44566 79999999999999864 3667777653
No 71
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=66.25 E-value=2.3e+02 Score=33.36 Aligned_cols=196 Identities=18% Similarity=0.205 Sum_probs=95.3
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCc-eeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGK-IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI 546 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~-~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~ 546 (857)
...+||-.||++ +.+|...|.+-+|+..-+ .+-.+... .+.+...-|--.+..-++.++.+..+.+|+.++...
T Consensus 71 v~s~~fR~DG~L-laaGD~sG~V~vfD~k~r~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v 145 (487)
T KOG0310|consen 71 VYSVDFRSDGRL-LAAGDESGHVKVFDMKSRVILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV 145 (487)
T ss_pred eeEEEeecCCeE-EEccCCcCcEEEeccccHHHHHHHhhc----cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE
Confidence 456888889974 555667788888883221 11111111 112222333333444555566566667777655553
Q ss_pred EEEccccccccCCEEEecCCCCccc-EEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEE
Q 003012 547 WEQHLKSLVTQGPSIGDVDGDGHSD-VVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 547 W~~~~~~~~~~~vavgDlDGDG~~D-Lvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLv 625 (857)
...+ ......+..+|+-- +..- ++.++++|.|..|+...-. .+......+..+.+-+.+. .| -++
T Consensus 146 -~~~l-~~htDYVR~g~~~~-~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lp--------sg--s~i 211 (487)
T KOG0310|consen 146 -QAEL-SGHTDYVRCGDISP-ANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALP--------SG--SLI 211 (487)
T ss_pred -EEEe-cCCcceeEeecccc-CCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcC--------CC--CEE
Confidence 2222 22233444454421 1111 5556678988888854221 1111111111111111110 01 123
Q ss_pred EEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 626 TTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 626 v~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
+....+.+-++|-.+|......... .+-.+....+..|+ --|+.++.+|+|.+|+..
T Consensus 212 asAgGn~vkVWDl~~G~qll~~~~~-H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 212 ASAGGNSVKVWDLTTGGQLLTSMFN-HNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred EEcCCCeEEEEEecCCceehhhhhc-ccceEEEEEeecCC-ceEeecccccceEEEEcc
Confidence 3333334455554444333221111 22245666677888 568999999999999953
No 72
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=65.36 E-value=1.8e+02 Score=34.50 Aligned_cols=165 Identities=10% Similarity=0.080 Sum_probs=83.1
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
.+.+...|+|..- .-|..++..|.+.+... ++...=+.. ...++.+..-++----+.=|.+++.+|.+.+|+-..-
T Consensus 121 ~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~--~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 121 QSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFT--IDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred cceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccccee--cCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence 3567888887532 12233344466655533 222111111 1122333344443333444677788999999996433
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc-eEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC-ADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~-~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
..+..|..... .-.+.+.+.-.| ..-++....|-.+|++|-.... ...+.. +.+.+ ..+|-.+|..
T Consensus 198 sp~~~~~~~Hs-AP~~gicfspsn-------e~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Pls---tvaf~~~G~~- 264 (673)
T KOG4378|consen 198 SPIFHASEAHS-APCRGICFSPSN-------EALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLS---TVAFSECGTY- 264 (673)
T ss_pred Ccccchhhhcc-CCcCcceecCCc-------cceEEEecccceEEEeecccccccceeee-cCCcc---eeeecCCceE-
Confidence 33333322111 111122233232 1334555677788888855321 112211 12222 3346667754
Q ss_pred EEEEecCCcEEEEeCCCCCCCcc
Q 003012 669 LIVTTMNGNVFCFSTPAPHHPLK 691 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~~~~~~pl~ 691 (857)
|++++.+|.|+.|+..+.-.|.+
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~ 287 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVA 287 (673)
T ss_pred EEeecCCceEEEEecccCCCCce
Confidence 77889999999999876555553
No 73
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=64.11 E-value=2e+02 Score=34.32 Aligned_cols=161 Identities=10% Similarity=0.136 Sum_probs=91.6
Q ss_pred EEEEeCCCcEEEEecCCCeeEEEccc-----c---c--cccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCe-eccc
Q 003012 527 LVTTDTHGNVAAWTAEGKGIWEQHLK-----S---L--VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSK-VRPY 595 (857)
Q Consensus 527 Lvv~~~~G~l~~~~~~G~~~W~~~~~-----~---~--~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~-~~~~ 595 (857)
|++.+......+|+.+|...-+.-.+ . . ....+..+-+.-+-+..++.++.+|.+..|+..+-+. +.-+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 44444445556666666544321110 0 0 1123444566667777888888899888888654332 1112
Q ss_pred ccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEe-----CCcceeeEEEEeecCCCCccE
Q 003012 596 PYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDI-----GETSYSMVLADNVDGGDDLDL 669 (857)
Q Consensus 596 ~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~-----g~~~~s~~~a~DlDGDG~~DL 669 (857)
.....+....++...-+|. ||.. |+.+..+|.+-+++-.+.+..+ +.+ ++...+++. |--||.. |
T Consensus 309 k~k~~~g~Rv~~tsC~~nr----dg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~---FS~dg~~-L 379 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNR----DGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS---FSYDGNY-L 379 (641)
T ss_pred eeccCCCcccCceeeecCC----Ccch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE---eccccch-h
Confidence 2233344445677778885 4444 8888899987777643322221 111 111222333 4456653 5
Q ss_pred EEEecCCcEEEEeCCCCCCCcccceec
Q 003012 670 IVTTMNGNVFCFSTPAPHHPLKAWRSI 696 (857)
Q Consensus 670 vv~t~~G~V~~~~~~~~~~pl~~W~s~ 696 (857)
+.-+.++.+.+|+....-.|+..|...
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCC
Confidence 555778899999998877888887653
No 74
>PTZ00420 coronin; Provisional
Probab=62.47 E-value=3.6e+02 Score=32.89 Aligned_cols=141 Identities=11% Similarity=0.162 Sum_probs=74.2
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|..||..+++..+..... ..+..+.++.||.. |++++.++.|.+++. .|+....+....+...
T Consensus 148 gtIrIWDl~tg~~~~~i~~~-------------~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 148 SFVNIWDIENEKRAFQINMP-------------KKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CeEEEEECCCCcEEEEEecC-------------CcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 66888999888765543211 12445667888863 444556788999994 5665544433323222
Q ss_pred ce-eEEEeecCCCCeEEEEEeCC----CcEEEEecC--CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEE
Q 003012 512 GA-VVAADINDDGKIELVTTDTH----GNVAAWTAE--GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVL 584 (857)
Q Consensus 512 ss-~~vaD~DGDG~~DLvv~~~~----G~l~~~~~~--G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l 584 (857)
.. +.+..+.+|+.. |+.+..+ ..+.+|+.. +..+-..........-..+.|- .+|.. ++.+..++.|++|
T Consensus 214 s~~v~~~~fs~d~~~-IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~-~tg~l-~lsGkGD~tIr~~ 290 (568)
T PTZ00420 214 TKNIWIDGLGGDDNY-ILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE-STGLI-YLIGKGDGNCRYY 290 (568)
T ss_pred eEEEEeeeEcCCCCE-EEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC-CCCCE-EEEEECCCeEEEE
Confidence 22 223345556554 3333333 258888763 3333222221111111123331 12332 4556678889999
Q ss_pred ECCCCC
Q 003012 585 SGKDGS 590 (857)
Q Consensus 585 ~~~~G~ 590 (857)
+-..+.
T Consensus 291 e~~~~~ 296 (568)
T PTZ00420 291 QHSLGS 296 (568)
T ss_pred EccCCc
Confidence 876664
No 75
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=59.85 E-value=3.7e+02 Score=32.19 Aligned_cols=199 Identities=15% Similarity=0.158 Sum_probs=109.9
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeE
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIW 547 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W 547 (857)
..+||-.--..-++-++.+..+..|++.- .+|......-..-+...-+..||.. ++.+..+|++++|+. +|+..-
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPP---FKFk~s~r~HskFV~~VRysPDG~~-Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFEGPP---FKFKSSFREHSKFVNCVRYSPDGSR-FATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEeeCCC---eeeeecccccccceeeEEECCCCCe-EEEecCCccEEEEcCCCccEEE
Confidence 34555555555666677677777776421 1222222222223556677888754 344556899999987 676654
Q ss_pred EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccce--EEEeccCCCCCCCCeEEE
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQV--LLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~--~v~DlDgDg~gDG~~DLv 625 (857)
+..-......++...-.--|+. -++.++.+-.+-.|+-.+.+.+..|+.... +.... .+.- + -.|+
T Consensus 227 ~l~~~~aHkGsIfalsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~--v~dqqvG~lWq-k--------d~lI 294 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGST--VEDQQVGCLWQ-K--------DHLI 294 (603)
T ss_pred EecCCCCccccEEEEEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCc--hhceEEEEEEe-C--------CeEE
Confidence 4332111111222222223332 355566666777777777777766655433 11111 1221 1 2467
Q ss_pred EEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 626 TTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 626 v~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
..+..|.+-.++........+..|.. - .+.+.-+..|| --|+.++.+|.+..|..++.
T Consensus 295 tVSl~G~in~ln~~d~~~~~~i~GHn-K-~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 295 TVSLSGTINYLNPSDPSVLKVISGHN-K-SITALTVSPDG-KTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred EEEcCcEEEEecccCCChhheecccc-c-ceeEEEEcCCC-CEEEeeccCceEEEEecCCc
Confidence 77788888777766554332222221 1 23333467788 56888899999999998654
No 76
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.60 E-value=3.4e+02 Score=31.63 Aligned_cols=263 Identities=15% Similarity=0.108 Sum_probs=133.2
Q ss_pred ceEEEeecCCCCccEEEEeeccCCccccc--CCccccccccccccccccceEEEEECCCCceEEEEeccCCCCccccccc
Q 003012 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYD--NPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAY 463 (857)
Q Consensus 386 spavaDiDGDG~~DIVv~~s~~~d~~~y~--n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~ 463 (857)
|..+-++..|+...+.-.--.-..+..|. .|+.... .....+..+..+|..+|+..-...- .
T Consensus 247 Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL-----laCg~~e~~~lwDv~tgd~~~~y~~-----------~ 310 (519)
T KOG0293|consen 247 TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL-----LACGFDEVLSLWDVDTGDLRHLYPS-----------G 310 (519)
T ss_pred eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE-----EecCchHheeeccCCcchhhhhccc-----------C
Confidence 56778889999877664322111121111 1111100 1111222366677777765322211 1
Q ss_pred cccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEee--cCCCCeEEEEEeCCCcEEEEec
Q 003012 464 IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADI--NDDGKIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 464 ~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~--DGDG~~DLvv~~~~G~l~~~~~ 541 (857)
..-++..+-...||.- +|+|+.++.++.++.+|+....|.-.. .+.+.|+ --||+.-+.++ .+..+.+|+.
T Consensus 311 ~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr-----~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~ 383 (519)
T KOG0293|consen 311 LGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVR-----DPKVHDLAITYDGKYVLLVT-VDKKIRLYNR 383 (519)
T ss_pred cCCCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccc-----cceeEEEEEcCCCcEEEEEe-cccceeeech
Confidence 1224555556778864 888999999999999998765554321 1333333 35777655555 4555666643
Q ss_pred CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 542 EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 542 ~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
....- .... ...+.+.-.-+-+||+.-+ +.-.+..++.|+-+.-..+..|.....+.+.-.-.++-.| .
T Consensus 384 e~~~d--r~li-se~~~its~~iS~d~k~~L-vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~-------~ 452 (519)
T KOG0293|consen 384 EARVD--RGLI-SEEQPITSFSISKDGKLAL-VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN-------D 452 (519)
T ss_pred hhhhh--hccc-cccCceeEEEEcCCCcEEE-EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC-------c
Confidence 11000 0000 1112233344556776422 2334567888887655555555444444433333343222 1
Q ss_pred eEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEE-EecCCcEEEEeCCC
Q 003012 622 LTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIV-TTMNGNVFCFSTPA 685 (857)
Q Consensus 622 ~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv-~t~~G~V~~~~~~~ 685 (857)
.-|+.+++|+.+|+.+..+|.....-.|.. .. +-..-.|.- .+.+++ ++.+|.|..|.+..
T Consensus 453 ~fiaSGSED~kvyIWhr~sgkll~~LsGHs-~~-vNcVswNP~-~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 453 KFIASGSEDSKVYIWHRISGKLLAVLSGHS-KT-VNCVSWNPA-DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEecCCCceEEEEEccCCceeEeecCCc-ce-eeEEecCCC-CHHHhhccCCCCeEEEecCCc
Confidence 346677889999999877775544323322 00 111112221 233333 45678888887643
No 77
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=57.45 E-value=2.5e+02 Score=32.96 Aligned_cols=88 Identities=11% Similarity=0.157 Sum_probs=55.4
Q ss_pred eeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEec----CCCCcccEEEEec
Q 003012 502 KFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDV----DGDGHSDVVVPTL 577 (857)
Q Consensus 502 ~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDl----DGDG~~DLvv~t~ 577 (857)
.|....|+..-.+.+....+ ...+|++.. ...+++++.+|...|..+... .+..+..-.. ++....-+++++.
T Consensus 232 dWs~nlGE~~l~i~v~~~~~-~~~~IvvLg-er~Lf~l~~~G~l~~~krLd~-~p~~~~~Y~~~~~~~~~~~~~llV~t~ 308 (418)
T PF14727_consen 232 DWSFNLGEQALDIQVVRFSS-SESDIVVLG-ERSLFCLKDNGSLRFQKRLDY-NPSCFCPYRVPWYNEPSTRLNLLVGTH 308 (418)
T ss_pred eeEEECCceeEEEEEEEcCC-CCceEEEEe-cceEEEEcCCCeEEEEEecCC-ceeeEEEEEeecccCCCCceEEEEEec
Confidence 34444455444566776655 556777765 456899999999999987642 2212222222 2222334999999
Q ss_pred CCcEEEEECCCCCeecc
Q 003012 578 SGNIYVLSGKDGSKVRP 594 (857)
Q Consensus 578 ~G~I~~l~~~~G~~~~~ 594 (857)
++.+.+|+. .+..|.
T Consensus 309 t~~LlVy~d--~~L~Ws 323 (418)
T PF14727_consen 309 TGTLLVYED--TTLVWS 323 (418)
T ss_pred CCeEEEEeC--CeEEEe
Confidence 999999984 566765
No 78
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=56.66 E-value=4e+02 Score=31.52 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=112.6
Q ss_pred cccccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCc-eeeeeeee
Q 003012 428 GKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGK-IREKFPLE 506 (857)
Q Consensus 428 ~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~-~~~~~~~~ 506 (857)
...+.+.++.||..+|+..-+..+. ++| ..|++=-+...++....+|.|+++.-+++ +...+.
T Consensus 293 S~~vD~ttilwd~~~g~~~q~f~~~-------------s~~-~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~-- 356 (524)
T KOG0273|consen 293 SGGVDGTTILWDAHTGTVKQQFEFH-------------SAP-ALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI-- 356 (524)
T ss_pred eccCCccEEEEeccCceEEEeeeec-------------cCC-ccceEEecCceEeecCCCceEEEEEecCCCcceeee--
Confidence 3345567777777776654433321 223 23333334456777777888888875544 222222
Q ss_pred ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCee-----EEEccccccccCCEEEecCCCCcccEEEEecCCc
Q 003012 507 MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGI-----WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (857)
Q Consensus 507 ~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~-----W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~ 580 (857)
| -.+.+.+.-+|--|.+ |..++.++.+.+|.. ++.-. +++.+-.......--++-|-.-..-++.+..++.
T Consensus 357 -G-H~g~V~alk~n~tg~L-LaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst 433 (524)
T KOG0273|consen 357 -G-HHGEVNALKWNPTGSL-LASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST 433 (524)
T ss_pred -c-ccCceEEEEECCCCce-EEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe
Confidence 2 3345666677755543 555667788888864 21110 1111100000000011111111123556667889
Q ss_pred EEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEe
Q 003012 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADN 660 (857)
Q Consensus 581 I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~D 660 (857)
+.+|+-..|..+..+... ..|+...++-. ...-++.++.+|.+.+.+-+.+..-.-..+... +.-.=
T Consensus 434 V~lwdv~~gv~i~~f~kH-----~~pVysvafS~-----~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~ 500 (524)
T KOG0273|consen 434 VKLWDVESGVPIHTLMKH-----QEPVYSVAFSP-----NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELC 500 (524)
T ss_pred EEEEEccCCceeEeeccC-----CCceEEEEecC-----CCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEE
Confidence 999998888876443211 23444444432 224567788888888777665543332222222 11122
Q ss_pred ecCCCCccEEEEecCCcEEEEe
Q 003012 661 VDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 661 lDGDG~~DLvv~t~~G~V~~~~ 682 (857)
+|-+| .-|.++..+|.+.+++
T Consensus 501 Wn~~G-~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 501 WNAAG-DKLGACASDGSVCVLD 521 (524)
T ss_pred EcCCC-CEEEEEecCCCceEEE
Confidence 56666 2345555677776654
No 79
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=55.12 E-value=16 Score=25.98 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEecCCcEEEEECCCCCeeccc
Q 003012 572 VVVPTLSGNIYVLSGKDGSKVRPY 595 (857)
Q Consensus 572 Lvv~t~~G~I~~l~~~~G~~~~~~ 595 (857)
+++++.+|.+++++..+|+..|.+
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 778888999999999999998864
No 80
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=54.34 E-value=1.5e+02 Score=34.19 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=97.0
Q ss_pred cccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCC
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK 544 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~ 544 (857)
...+-.|+|.|++..|.. +.++.+.+++ ..+..+..... -...+..+++--.-.. +|-++.+-.+-.|+..-.
T Consensus 220 g~it~~d~d~~~~~~iAa-s~d~~~r~Wnvd~~r~~~TLsG----HtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAA-SNDKNLRLWNVDSLRLRHTLSG----HTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKA 293 (459)
T ss_pred CCcceeeecCCCceEEee-cCCCceeeeeccchhhhhhhcc----cccceeeehhhccccc-eeeccccchhhhhhhhhh
Confidence 346778999999865554 4455555555 44544333222 2234555555322211 344444333333332110
Q ss_pred eeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 545 ~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
.--...........+.+. ..+++-+..+.+|.+|+...+......| .+| .+.-.|+. -++..|
T Consensus 294 ~C~kt~l~~S~cnDI~~~------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg----~vtSl~ls-----~~g~~l 356 (459)
T KOG0288|consen 294 YCSKTVLPGSQCNDIVCS------ISDVISGHFDKKVRFWDIRSADKTRSVP--LGG----RVTSLDLS-----MDGLEL 356 (459)
T ss_pred heeccccccccccceEec------ceeeeecccccceEEEeccCCceeeEee--cCc----ceeeEeec-----cCCeEE
Confidence 000000011111112221 2344555567889999876666553322 233 33344553 345778
Q ss_pred EEEecCCeEEEEcCCCCceEEEEe--CCc---ceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 625 VTTSFDGYLYLIDGPTSCADVVDI--GET---SYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 625 vv~s~dG~ly~~dg~~g~~~~i~~--g~~---~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
...+.+..+-++++.+..+...-. +.. .++.+. |-.||. -+..++++|.||+|+..+
T Consensus 357 LsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv---fSpd~~-YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 357 LSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV---FSPDGS-YVAAGSADGSVYIWSVFT 418 (459)
T ss_pred eeecCCCceeeeecccccEEEEeeccccccccccceeE---ECCCCc-eeeeccCCCcEEEEEccC
Confidence 888888988888888755443211 111 112122 334443 256678999999999743
No 81
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=52.32 E-value=4.3e+02 Score=30.58 Aligned_cols=226 Identities=16% Similarity=0.184 Sum_probs=108.4
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccE--EEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPT--VVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMA 508 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspa--vaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g 508 (857)
.+|.|..||+++|+..-..- ..- ..++ .+.+ ...++.... -++-++-+|.+.+++-.+... .+.+.
T Consensus 177 ~dg~I~lwdpktg~~~g~~l---~gH----~K~I-t~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-~~~ls-- 244 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIGRAL---RGH----KKWI-TALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-VRTLS-- 244 (480)
T ss_pred cCCeEEEecCCCCCcccccc---cCc----ccce-eEEeecccccCCCcc-ceecccCCCCEEEEEccCceE-EEEec--
Confidence 45789999998877632210 000 0111 0111 122333333 233334466677777433211 11111
Q ss_pred ceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-C--------CCeeEEEccccccccCCEEEecCCCCc----------
Q 003012 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E--------GKGIWEQHLKSLVTQGPSIGDVDGDGH---------- 569 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~--------G~~~W~~~~~~~~~~~vavgDlDGDG~---------- 569 (857)
.-+.++.+.-.-|+| =|+.++.++.+.+|++ + |..-|..++.-.....+..+-|+.-|.
T Consensus 245 gHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred cCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 223456666666666 4677788888999976 3 444566543322111222222322222
Q ss_pred --------------ccEEEEecCCcEEEEECCCCC-eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEE
Q 003012 570 --------------SDVVVPTLSGNIYVLSGKDGS-KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLY 634 (857)
Q Consensus 570 --------------~DLvv~t~~G~I~~l~~~~G~-~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly 634 (857)
.-+|-++.+..+++|++..-+ .+. ..++ -..-+.-+-+.. | ..-|+.+++|..+-
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~---rmtg--Hq~lVn~V~fSP----d-~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT---RMTG--HQALVNHVSFSP----D-GRYIASASFDKSVK 392 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEecccccccchh---hhhc--hhhheeeEEECC----C-ccEEEEeeccccee
Confidence 246777778899999874222 111 1111 011111222221 1 24567788888888
Q ss_pred EEcCCCCceEE-EE-eCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 635 LIDGPTSCADV-VD-IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 635 ~~dg~~g~~~~-i~-~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+.+|.+|.... +. .-...|... +-.|-++ |+.++.+..+.+|+-..
T Consensus 393 LW~g~tGk~lasfRGHv~~VYqva----wsaDsRL-lVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVAAVYQVA----WSADSRL-LVSGSKDSTLKVWDVRT 440 (480)
T ss_pred eeeCCCcchhhhhhhccceeEEEE----eccCccE-EEEcCCCceEEEEEeee
Confidence 88888774332 11 001122211 2333332 34446777888887643
No 82
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.09 E-value=4.6e+02 Score=34.22 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=94.7
Q ss_pred CeEEEEe-CCCceeeeeeeecc--ceeceeEEEeecCCCCeEEEEEeCCCcEEEEec--CC--Cee----EEEc---ccc
Q 003012 488 GLFYVLD-HHGKIREKFPLEMA--EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA--EG--KGI----WEQH---LKS 553 (857)
Q Consensus 488 G~Lyv~~-~dG~~~~~~~~~~g--~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~--~G--~~~----W~~~---~~~ 553 (857)
..+.+++ ..|+.+.+|..... ...+.+. =+|++-..=+++++.+|.+.+|.+ ++ +.. |..- ...
T Consensus 1086 ~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~--liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~ 1163 (1387)
T KOG1517|consen 1086 ERIRVWDWEKGRLLNGFDNGAFPDTRVSDLE--LINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPG 1163 (1387)
T ss_pred ceEEEEecccCceeccccCCCCCCCccceee--eecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCcc
Confidence 3555666 45655555544321 1112222 246666666788888999999976 33 211 3311 111
Q ss_pred ccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeE
Q 003012 554 LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYL 633 (857)
Q Consensus 554 ~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~l 633 (857)
....+ .+.|...-- --++++.....|.+|+...-......|...... ....-+|+. ...-|++|-.||.+
T Consensus 1164 ~r~~~-~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~--vTaLS~~~~------~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1164 ARGTG-LVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL--VTALSADLV------HGNIIAAGFADGSV 1233 (1387)
T ss_pred CCCCC-eeeehhhhC-CeEEecCCeeEEEEEecccceeEeecccCCCcc--ceeeccccc------CCceEEEeecCCce
Confidence 12222 455554321 114444334456666654333343334332211 112233443 23446777778988
Q ss_pred EEEcCCCCceEE-EEe--CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 634 YLIDGPTSCADV-VDI--GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 634 y~~dg~~g~~~~-i~~--g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
-++|-.-...+. +.. .......+.-.-+...|..+||.++.+|.|+.|+...+
T Consensus 1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred EEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 888755332211 110 00111113333477777779999999999999998653
No 83
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=51.80 E-value=4.1e+02 Score=30.24 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=40.0
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeec--cceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM--AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~--g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~ 542 (857)
+-.++++-||+.=+++--...+|++|+ .+|......+... |....-++ |-.+|+.-.++.--++.+.+|.-+
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~---FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV---FHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE---EcCCCcEEEEEeccCCEEEEEEEc
Confidence 567888888864333322234677777 4776554333222 22222233 344677666666667777777543
No 84
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=51.32 E-value=6.3e+02 Score=32.25 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=92.5
Q ss_pred cEEEEeeCCeEEEEe-CCCc---eeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccc
Q 003012 480 DILVGTSFGLFYVLD-HHGK---IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL 554 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~-~dG~---~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~ 554 (857)
.++.++..+.+.++. ..|. .+.+|.+ .+...=++++|.. +++++.+-.+.+.+. ++......+ .
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftl-------p~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lr---g 136 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILARFTL-------PIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLR---G 136 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceeeeeec-------cceEEEEecCCcE-EEeecCceeEEEEeccccchheeec---c
Confidence 677777777766665 2232 2223332 2344446777754 444444555666654 333333221 1
Q ss_pred cccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccC--Ccc-ccceEEEeccCCCCCCCCeEEEEEecCC
Q 003012 555 VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH--GRV-MNQVLLVDLTKRGEKSKGLTIVTTSFDG 631 (857)
Q Consensus 555 ~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~--g~~-~s~~~v~DlDgDg~gDG~~DLvv~s~dG 631 (857)
....+.-.+++-.|.. |++.+.+|.+++|+-.+|...-.+..... ... .......-+-. + ...+++...++
T Consensus 137 h~apVl~l~~~p~~~f-LAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P----k-~g~la~~~~d~ 210 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNF-LAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP----K-GGTLAVPPVDN 210 (933)
T ss_pred cCCceeeeeEcCCCCE-EEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC----C-CCeEEeeccCC
Confidence 1223445677666543 55566799999999888875432221111 111 11222222321 1 12345555566
Q ss_pred eEEEEcCCCCceEEEEeCCcce-eeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 632 YLYLIDGPTSCADVVDIGETSY-SMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 632 ~ly~~dg~~g~~~~i~~g~~~~-s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.+-+++..+..... .+..... +.+...-+.-.|. -|..++.+|.|.+|+..+
T Consensus 211 ~Vkvy~r~~we~~f-~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 211 TVKVYSRKGWELQF-KLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVDT 263 (933)
T ss_pred eEEEEccCCceehe-eecccccccceEEEEEcCCCc-EEeeeccCCcEEEEeccc
Confidence 66666655433222 1211111 1122223555554 366678888898888763
No 85
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=50.78 E-value=15 Score=39.94 Aligned_cols=38 Identities=21% Similarity=0.486 Sum_probs=35.5
Q ss_pred CCCCceEEEEEeeceeEEEEeecCccccceeeecceee
Q 003012 132 DKDGVREIALATYNGEVLFFRVSGYMMTDKLEIPRRKV 169 (857)
Q Consensus 132 ~~dg~~~~~~~~~~g~~~~~~~~g~~~~~~~~vp~~~v 169 (857)
|.|+.-..+|+|-+|+||+++..++-+..++++|..+|
T Consensus 191 d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv 228 (257)
T PF14779_consen 191 DEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPV 228 (257)
T ss_pred CCCCcceEEEEecCCeEEEECchhheeEEEEecCCCce
Confidence 67788899999999999999999999999999998887
No 86
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=49.79 E-value=2.2e+02 Score=32.60 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=59.6
Q ss_pred cEEEEe-cCCcEEEEECCCCCeeccccccc--CCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEE
Q 003012 571 DVVVPT-LSGNIYVLSGKDGSKVRPYPYRT--HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVD 647 (857)
Q Consensus 571 DLvv~t-~~G~I~~l~~~~G~~~~~~~~~~--~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~ 647 (857)
.|+.++ .++.|++|+..+++++....... .+-..+| ...-++++++|-.+|.+|-..-. .++.
T Consensus 201 sILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-------------eafnF~~a~ED~nlY~~DmR~l~-~p~~ 266 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-------------EAFNFVAANEDHNLYTYDMRNLS-RPLN 266 (433)
T ss_pred hheeeeccCCceEEEecccCCccceeeeeccccceecCc-------------cccceeeccccccceehhhhhhc-ccch
Confidence 344444 68899999988887765432222 2111122 12335778888889988744211 1111
Q ss_pred eCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 648 IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 648 ~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.-....+.+.-.||..-|. +++.++.+..+..|..+.
T Consensus 267 v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hhcccceeEEEeccCCCcc-hhccccccceEEEeecCC
Confidence 1112334455567777774 799999999999998754
No 87
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=49.70 E-value=4.2e+02 Score=29.69 Aligned_cols=209 Identities=18% Similarity=0.152 Sum_probs=100.5
Q ss_pred cccEEEecCCCCCccEEEEeeCCeEEEEe--CCCceeeeeeeec----c-----ceeceeEEEeecCCCCeEEEEEeCCC
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLD--HHGKIREKFPLEM----A-----EIQGAVVAADINDDGKIELVTTDTHG 534 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G~Lyv~~--~dG~~~~~~~~~~----g-----~i~ss~~vaD~DGDG~~DLvv~~~~G 534 (857)
..|+-.-++.||+.=++.....|.+.+++ .+|.......... + .....+..+-++-||+.=++.--...
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 45777788888875444444567776665 4676554321110 1 11223555667888876555444456
Q ss_pred cEEEEecCC---CeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECC--CCCeecccccccCC-cc--ccc
Q 003012 535 NVAAWTAEG---KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK--DGSKVRPYPYRTHG-RV--MNQ 606 (857)
Q Consensus 535 ~l~~~~~~G---~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~--~G~~~~~~~~~~~g-~~--~s~ 606 (857)
.+++|+.+. ...-...+.-..+.++.-.-|..||..=.++...++.|.+|+-. +|.........+.. .. ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 777876532 22222222223445566666777776533333346667666644 55442211111110 00 001
Q ss_pred eEEEeccCCCCCCCCeEEEEEecC-Ce--EEEEcCCCCceEEE---EeCCcceeeEEEEeecCCCCccEEEEe-cCCcEE
Q 003012 607 VLLVDLTKRGEKSKGLTIVTTSFD-GY--LYLIDGPTSCADVV---DIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVF 679 (857)
Q Consensus 607 ~~v~DlDgDg~gDG~~DLvv~s~d-G~--ly~~dg~~g~~~~i---~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~ 679 (857)
+.-.-+. .|| .-|++.+.. +. +|.++..++....+ ..++. .|.-.-++.||+. |+|++ ..+.|.
T Consensus 247 ~~~i~is----pdg-~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~---~Pr~~~~s~~g~~-l~Va~~~s~~v~ 317 (345)
T PF10282_consen 247 PAEIAIS----PDG-RFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK---FPRHFAFSPDGRY-LYVANQDSNTVS 317 (345)
T ss_dssp EEEEEE-----TTS-SEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS---SEEEEEE-TTSSE-EEEEETTTTEEE
T ss_pred ceeEEEe----cCC-CEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC---CccEEEEeCCCCE-EEEEecCCCeEE
Confidence 1111122 133 245565543 33 44454555555443 22221 2343446788875 45554 566777
Q ss_pred EEeC
Q 003012 680 CFST 683 (857)
Q Consensus 680 ~~~~ 683 (857)
+|+-
T Consensus 318 vf~~ 321 (345)
T PF10282_consen 318 VFDI 321 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=49.38 E-value=2.6e+02 Score=34.40 Aligned_cols=134 Identities=13% Similarity=0.149 Sum_probs=72.2
Q ss_pred cEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCC
Q 003012 480 DILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGP 559 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~v 559 (857)
.++.|+.+..|+.+.+ |+....+.-.+ .....+++.| ...++-++.+|.+..|+.+|..+-+.+.-...-.++
T Consensus 153 ~~vTgsaDKtIklWk~-~~~l~tf~gHt-D~VRgL~vl~-----~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsi 225 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG-GTLLKTFSGHT-DCVRGLAVLD-----DSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSI 225 (745)
T ss_pred cEEeccCcceeeeccC-Cchhhhhccch-hheeeeEEec-----CCCeEeecCCceEEEEeccCceeeeeeccceEEEEE
Confidence 5666677777887776 55554444332 2223355544 124677777888888888887766544222111112
Q ss_pred EEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEec-cCCCCCCCCeEEEEEecCCeEEEEcC
Q 003012 560 SIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDL-TKRGEKSKGLTIVTTSFDGYLYLIDG 638 (857)
Q Consensus 560 avgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~Dl-DgDg~gDG~~DLvv~s~dG~ly~~dg 638 (857)
.. .=+| .+|+.+..++.+..|... .... .+...+. +-..+-=+ | -||++++.||.+|++.-
T Consensus 226 s~--~~~~--~~Ivs~gEDrtlriW~~~--e~~q--~I~lPtt--siWsa~~L~N--------gDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 226 SM--ALSD--GLIVSTGEDRTLRIWKKD--ECVQ--VITLPTT--SIWSAKVLLN--------GDIVVGGSDGRVRVFTV 287 (745)
T ss_pred Ee--cCCC--CeEEEecCCceEEEeecC--ceEE--EEecCcc--ceEEEEEeeC--------CCEEEeccCceEEEEEe
Confidence 21 1111 245555668888888753 2221 1222211 00111112 3 36999999999998853
No 89
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=47.41 E-value=2.1e+02 Score=25.66 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=46.8
Q ss_pred CCCeeEEEEEEeeccc-CCCCCCCCeEEEEEEecCCccccceeeeecc-ccCCCceeeEecccCCcccceEEEEEEEc--
Q 003012 725 EGRNFWVEIEIVDEYR-FPSGSQAPYNVTTTLLVPGNYQGERRIKQSQ-IFARRGKYRIKLPTVGVRTTGTVLVEMVD-- 800 (857)
Q Consensus 725 dG~~~~v~~~i~D~~~-~~~~~~~~y~v~v~~~~~g~~~g~r~~~~~~-~~~~~g~~~~~~~~~~~r~~~~v~v~~~~-- 800 (857)
.|+..++..-+.+... .+. -....++++|..+.+-. ...... .-+..|.+..+++.|.....|.-+|++.-
T Consensus 13 PGetV~~~~~~~~~~~~~~~--~~~~~~~v~i~dp~g~~---v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~ 87 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKP--PANSPVTVTIKDPSGNE---VFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDD 87 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSC--ESSEEEEEEEEETTSEE---EEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETT
T ss_pred CCCEEEEEEEEecccccccc--ccCCceEEEEECCCCCE---EEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEcc
Confidence 3666666666555531 111 11345555555553332 212223 45788999999999999999999777776
Q ss_pred CCCceEEEeEEe
Q 003012 801 KNGLYFSDEFSL 812 (857)
Q Consensus 801 ~~~~~~~d~~~~ 812 (857)
..+..++-+|.|
T Consensus 88 ~~~~~~~~~F~V 99 (99)
T PF01835_consen 88 DGGQSFSKTFQV 99 (99)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCCCEEEEEEEC
Confidence 577777777654
No 90
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.31 E-value=27 Score=24.74 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=19.4
Q ss_pred EEEEeeCCeEEEEeC-CCceeeee
Q 003012 481 ILVGTSFGLFYVLDH-HGKIREKF 503 (857)
Q Consensus 481 IvVg~~~G~Lyv~~~-dG~~~~~~ 503 (857)
+++++.+|.+++++. +|+.+|.+
T Consensus 9 v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 9 VYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEcCCCEEEEEEcccCcEEEEc
Confidence 677778899999994 99999875
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=46.43 E-value=7.2e+02 Score=31.52 Aligned_cols=100 Identities=13% Similarity=0.138 Sum_probs=64.4
Q ss_pred cEEEEecCCcEEEEECCCCCeecccccccCCcccc--ceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EE
Q 003012 571 DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMN--QVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VD 647 (857)
Q Consensus 571 DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s--~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~ 647 (857)
-|+++...|.+..|+-.+|+.+..|+.-. .++++ +.-+.|+ ++++..+|.+.+++-+.+.... +.
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDV-----------VaiG~~~G~ViifNlK~dkil~sFk 241 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDV-----------VAIGLENGTVIIFNLKFDKILMSFK 241 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceE-----------EEEeccCceEEEEEcccCcEEEEEE
Confidence 48888889999999999999875543222 12211 1112233 4677889999998877654432 22
Q ss_pred eCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 648 IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 648 ~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.. ++.+...-|--||.+=+++++.+|.+..|+...
T Consensus 242 ~d---~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 242 QD---WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred cc---ccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 22 222233336678998888888889999888754
No 92
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=46.22 E-value=4.4e+02 Score=28.93 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=87.7
Q ss_pred CCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEec
Q 003012 487 FGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDV 564 (857)
Q Consensus 487 ~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDl 564 (857)
+-.|-.++ .+|.-....+-. -+++-.--+-.|++ +|+++ ..-++.+|+. ++++.=...+. .....+...-|
T Consensus 19 DhTIRfWqa~tG~C~rTiqh~----dsqVNrLeiTpdk~-~LAaa-~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF 91 (311)
T KOG0315|consen 19 DHTIRFWQALTGICSRTIQHP----DSQVNRLEITPDKK-DLAAA-GNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGF 91 (311)
T ss_pred cceeeeeehhcCeEEEEEecC----ccceeeEEEcCCcc-hhhhc-cCCeeEEEEccCCCCCceeEEe-ccCCceEEEEE
Confidence 33455555 466544333322 12233334445553 33333 3456777764 33332111111 11223444556
Q ss_pred CCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCC-ce
Q 003012 565 DGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS-CA 643 (857)
Q Consensus 565 DGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g-~~ 643 (857)
-.||+- ++.++.+|.+.+|+-..-.....|. ..+++.-.=++ ...-+|+++..+|.+.+.|-... |.
T Consensus 92 ~~dgrW-MyTgseDgt~kIWdlR~~~~qR~~~------~~spVn~vvlh-----pnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 92 QCDGRW-MYTGSEDGTVKIWDLRSLSCQRNYQ------HNSPVNTVVLH-----PNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred eecCeE-EEecCCCceEEEEeccCcccchhcc------CCCCcceEEec-----CCcceEEeecCCCcEEEEEccCCccc
Confidence 666764 6666677777777654322111111 12333222221 23468999999999998885543 43
Q ss_pred EEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 644 DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 644 ~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
... +.+...+ +.-.-+.-||.. ++.++..|+.|+|+.-
T Consensus 160 ~~l-iPe~~~~-i~sl~v~~dgsm-l~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 160 HEL-IPEDDTS-IQSLTVMPDGSM-LAAANNKGNCYVWRLL 197 (311)
T ss_pred ccc-CCCCCcc-eeeEEEcCCCcE-EEEecCCccEEEEEcc
Confidence 321 2222111 111225677765 6667888999999973
No 93
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=45.44 E-value=5.1e+02 Score=29.51 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=57.5
Q ss_pred EEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe--CCCceeeeeeee--ccce
Q 003012 435 IVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD--HHGKIREKFPLE--MAEI 510 (857)
Q Consensus 435 v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~--~dG~~~~~~~~~--~g~i 510 (857)
.+.+|.++|+.....+..+. .+.|+-.++|.||..=+......|.|.++. .+|......... .+..
T Consensus 68 ay~iD~~~G~Lt~ln~~~~~----------g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~ 137 (346)
T COG2706 68 AYRIDPDDGRLTFLNRQTLP----------GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSG 137 (346)
T ss_pred EEEEcCCCCeEEEeeccccC----------CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCC
Confidence 34446666776554433221 234688999999975444444456666655 467654322211 1211
Q ss_pred ------eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCee
Q 003012 511 ------QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGI 546 (857)
Q Consensus 511 ------~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~ 546 (857)
..-+-.++++-||+.=+++--...++++|+. +|...
T Consensus 138 p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~ 180 (346)
T COG2706 138 PHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT 180 (346)
T ss_pred CCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc
Confidence 1125678899999765555445567888865 45443
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=45.13 E-value=4.5e+02 Score=28.81 Aligned_cols=140 Identities=15% Similarity=0.170 Sum_probs=79.6
Q ss_pred EEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCcccc
Q 003012 527 LVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMN 605 (857)
Q Consensus 527 Lvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s 605 (857)
|+-...++.+.+|+. +|...-+..+.+ .+.-..+-.|| +++...+.+.|..|+..+-..+..+... .
T Consensus 158 iLSSadd~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG--~ilTia~gssV~Fwdaksf~~lKs~k~P--~---- 225 (334)
T KOG0278|consen 158 ILSSADDKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDG--RILTIAYGSSVKFWDAKSFGLLKSYKMP--C---- 225 (334)
T ss_pred EEeeccCCceEEEEeccCcEEEEEecCC----CCcceeeccCC--CEEEEecCceeEEeccccccceeeccCc--c----
Confidence 444455677888875 776665544433 23344555666 4777777777887877654444332221 1
Q ss_pred ceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 606 QVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 606 ~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.+..+-+- ...--+|+++++..+|.+|=.++..... ....-++.+...-|--||.. ...++.+|.+.+|....
T Consensus 226 nV~SASL~-----P~k~~fVaGged~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE~-yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 226 NVESASLH-----PKKEFFVAGGEDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGEL-YASGSEDGTIRLWQTTP 298 (334)
T ss_pred cccccccc-----CCCceEEecCcceEEEEEeccCCceeee-cccCCCCceEEEEECCCCce-eeccCCCceEEEEEecC
Confidence 12222232 1123356677888999998776643322 11122334555567788853 33458999999999754
No 95
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=43.93 E-value=5.1e+02 Score=29.06 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=62.1
Q ss_pred cccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEe
Q 003012 569 HSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDI 648 (857)
Q Consensus 569 ~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~ 648 (857)
..+|++++++|.+..|+...-.....+ . ...|++-.-+- ....+++++-+|.+-.+|-.++....+..
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~--~----~~~plL~c~F~------d~~~~~~G~~dg~vr~~Dln~~~~~~igt 92 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKF--K----HGAPLLDCAFA------DESTIVTGGLDGQVRRYDLNTGNEDQIGT 92 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhhe--e----cCCceeeeecc------CCceEEEeccCceEEEEEecCCcceeecc
Confidence 357999999999999986433222111 1 12343322221 13678999999999999888776666544
Q ss_pred CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 649 GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 649 g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.+.+...+.-. =+...+|.++.++.+.+|++..
T Consensus 93 h~~~i~ci~~~----~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 93 HDEGIRCIEYS----YEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred CCCceEEEEee----ccCCeEEEcccCccEEEEeccc
Confidence 44333322111 1233477788999999999753
No 96
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=42.95 E-value=3.5e+02 Score=26.82 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=64.9
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEeCCCcee----eeeee---eccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLDHHGKIR----EKFPL---EMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~----~~~~~---~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~ 541 (857)
+++-+||... =|+.++..|+|++.++..... +.-++ ..+.-...++++-|+.+...|+++......+.+|+-
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 4666777664 677778888999987532211 11111 123334567888888666677777777888999976
Q ss_pred -CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 542 -EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 542 -~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
+-...|.+.....+. .+.++-+.. ....+++...+-.|.-|+.
T Consensus 81 ~~N~d~Fyke~~DGvn-~i~~g~~~~-~~~~l~ivGGncsi~Gfd~ 124 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVN-AIVIGKLGD-IPSPLVIVGGNCSIQGFDY 124 (136)
T ss_pred ccCchhhhhhCcccee-EEEEEecCC-CCCcEEEECceEEEEEeCC
Confidence 333445444432222 334444422 2334555544445555554
No 97
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.75 E-value=9.4e+02 Score=31.38 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=88.6
Q ss_pred CCCCeEEEEEeCCCcEEEEecC-CCeeEEEcc-------cc-----------ccccCCEEEecCCC-CcccEEEEec---
Q 003012 521 DDGKIELVTTDTHGNVAAWTAE-GKGIWEQHL-------KS-----------LVTQGPSIGDVDGD-GHSDVVVPTL--- 577 (857)
Q Consensus 521 GDG~~DLvv~~~~G~l~~~~~~-G~~~W~~~~-------~~-----------~~~~~vavgDlDGD-G~~DLvv~t~--- 577 (857)
++-..-|+++..+|.++.|+.. |.++|...- .. .+...+.++|.--+ .+--++++..
T Consensus 579 ~~R~~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~~G~G 658 (1036)
T COG3419 579 ANRAPVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLVGGLGAG 658 (1036)
T ss_pred CCccceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEEeecCCC
Confidence 3444567777778999999875 999887431 11 12235566664333 3444666554
Q ss_pred CCcEEEEECCCCC-----eeccccccc---CCccccceEEEeccCCCCCCCCeEEEEEecCC------eEEEE---cCCC
Q 003012 578 SGNIYVLSGKDGS-----KVRPYPYRT---HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDG------YLYLI---DGPT 640 (857)
Q Consensus 578 ~G~I~~l~~~~G~-----~~~~~~~~~---~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG------~ly~~---dg~~ 640 (857)
...+|+++-.+-. .+|...... -|.....+.++-+ -||..-+++++-.. .++++ .+..
T Consensus 659 G~glyALDVTdP~~~~~~~Lw~~~~~d~~~LG~t~gkP~Iv~l-----~~gswavl~GNGynS~~n~~al~~~~L~t~~~ 733 (1036)
T COG3419 659 GRGLYALDVTDPDFSNSNLLWENNSNDDPDLGYTMGKPRIVPL-----HDGSWAVLLGNGYNSPANGAALLVLNLLTLDA 733 (1036)
T ss_pred CceeEEEEccCccccCCcchhcccCCCccccccccCCCeEEEc-----CCCceEEEEccCCCCCCCCcceEEEEeecCCc
Confidence 2378888865433 344322221 1344455666666 35555555554321 22222 2222
Q ss_pred CceEEEEeCCc------------ceeeEEEEeecCCCCccEEEE-ecCCcEEEEeCCC
Q 003012 641 SCADVVDIGET------------SYSMVLADNVDGGDDLDLIVT-TMNGNVFCFSTPA 685 (857)
Q Consensus 641 g~~~~i~~g~~------------~~s~~~a~DlDGDG~~DLvv~-t~~G~V~~~~~~~ 685 (857)
.....+..+.. ....+.+.|+|+||..|++.+ ..-|+++.|+..+
T Consensus 734 ~~~~~v~~g~~~~~g~~P~~~~~g~~~~~~~d~~~dG~vd~aYAGDl~GnlWRFdLsg 791 (1036)
T COG3419 734 TRKVPVQSGTGYGAGVSPVCVGVGGLDVAVLDLDGDGIVDYAYAGDLGGNLWRFDLSG 791 (1036)
T ss_pred ceeEEEeccCCccccccCccccccccccceeecCCCceEEEEEeeccCCcEEEEEecC
Confidence 21111211110 112367789999999999776 6788999998754
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=39.30 E-value=8.6e+02 Score=31.13 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=58.5
Q ss_pred cEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCC
Q 003012 571 DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE 650 (857)
Q Consensus 571 DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~ 650 (857)
.+++++.++.+.+|.-..|... ..-.++..++...-++++ | .-+++++.+-.+-+++..+......-.+
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~-----~iL~Rftlp~r~~~v~g~----g-~~iaagsdD~~vK~~~~~D~s~~~~lrg- 136 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEED-----TILARFTLPIRDLAVSGS----G-KMIAAGSDDTAVKLLNLDDSSQEKVLRG- 136 (933)
T ss_pred ceEEeeccceEEEeeCCCCCcc-----ceeeeeeccceEEEEecC----C-cEEEeecCceeEEEEeccccchheeecc-
Confidence 6788888888888875544321 011233445544555532 2 2344555555566666554433322111
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.-+.+...+++..|.. |++.+.+|.|++|+...
T Consensus 137 -h~apVl~l~~~p~~~f-LAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 137 -HDAPVLQLSYDPKGNF-LAVSSCDGKVQIWDLQD 169 (933)
T ss_pred -cCCceeeeeEcCCCCE-EEEEecCceEEEEEccc
Confidence 2234566678887765 66678899999999854
No 99
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=37.27 E-value=7.2e+02 Score=28.86 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=76.1
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
...+-|-+||. -|+-|+.+..+-.++. +-++.. ... + -.+=+...++--||+ -|+.+..+|.+.+|++ +|+.
T Consensus 118 Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~--t~K-g-H~~WVlcvawsPDgk-~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 118 VLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLF--TCK-G-HKNWVLCVAWSPDGK-KIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred EEEEEecCCCc-eEEecCCCceEEeeccCCCCcce--eec-C-CccEEEEEEECCCcc-hhhccccCCeEEEecCCCCCc
Confidence 34455666664 3454554555666663 333221 111 1 112255666777885 3667778899999986 4433
Q ss_pred e---EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCe
Q 003012 546 I---WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGL 622 (857)
Q Consensus 546 ~---W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~ 622 (857)
. +..+......-.-.-.-++-..+ -++-++.+|.+.+|+-..|+.+.- ...-..++...-+- |.-
T Consensus 192 ~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~~~~-----lsgHT~~VTCvrwG------G~g 259 (480)
T KOG0271|consen 192 IGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTCVRT-----LSGHTASVTCVRWG------GEG 259 (480)
T ss_pred ccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceEEEE-----eccCccceEEEEEc------CCc
Confidence 2 11111100000001122223333 234444577888888665554321 12223455555553 233
Q ss_pred EEEEEecCCeEEEEcCCC
Q 003012 623 TIVTTSFDGYLYLIDGPT 640 (857)
Q Consensus 623 DLvv~s~dG~ly~~dg~~ 640 (857)
-|+.++.|+.+-+++...
T Consensus 260 liySgS~DrtIkvw~a~d 277 (480)
T KOG0271|consen 260 LIYSGSQDRTIKVWRALD 277 (480)
T ss_pred eEEecCCCceEEEEEccc
Confidence 477788888666655444
No 100
>PTZ00421 coronin; Provisional
Probab=36.58 E-value=8.1e+02 Score=29.28 Aligned_cols=120 Identities=17% Similarity=0.169 Sum_probs=69.0
Q ss_pred eeEEEeecC-CCCeEEEEEeCCCcEEEEecC-CCeeEE--Eccc--cccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 513 AVVAADIND-DGKIELVTTDTHGNVAAWTAE-GKGIWE--QHLK--SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 513 s~~vaD~DG-DG~~DLvv~~~~G~l~~~~~~-G~~~W~--~~~~--~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
.+....++. |+. -|+.++.++.+.+|+.. +..... .... ......+....+..++..=|+.++.++.|.+|+.
T Consensus 77 ~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 77 PIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 455566665 543 47778888999999863 221100 0000 1112334455666554333566677899999998
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA 643 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~ 643 (857)
.+|+....+.. . ...+.-..++. +| .-|++++.++.+.++|..++..
T Consensus 156 ~tg~~~~~l~~--h---~~~V~sla~sp----dG-~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 156 ERGKAVEVIKC--H---SDQITSLEWNL----DG-SLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred CCCeEEEEEcC--C---CCceEEEEEEC----CC-CEEEEecCCCEEEEEECCCCcE
Confidence 77765433221 1 12344455543 23 3477888899999999776543
No 101
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=36.42 E-value=5.2e+02 Score=27.01 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe--CCCc-eeeeeeeec-c
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD--HHGK-IREKFPLEM-A 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~--~dG~-~~~~~~~~~-g 508 (857)
|.++.++.+.........+ ..|--.-++.||+.=++.-+..++|+.++ ..+. ......... .
T Consensus 115 g~v~~~~~~~~~~~~~~~~--------------~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~ 180 (246)
T PF08450_consen 115 GSVYRIDPDGKVTVVADGL--------------GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP 180 (246)
T ss_dssp EEEEEEETTSEEEEEEEEE--------------SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S
T ss_pred cceEEECCCCeEEEEecCc--------------ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcC
Q ss_pred ceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec
Q 003012 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL 577 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~ 577 (857)
.....+--.-+|.+|.+ .+.....+.+++|+.+|+.+-....+......++++ |.....|+|++.
T Consensus 181 ~~~g~pDG~~vD~~G~l-~va~~~~~~I~~~~p~G~~~~~i~~p~~~~t~~~fg---g~~~~~L~vTta 245 (246)
T PF08450_consen 181 GGPGYPDGLAVDSDGNL-WVADWGGGRIVVFDPDGKLLREIELPVPRPTNCAFG---GPDGKTLYVTTA 245 (246)
T ss_dssp SSSCEEEEEEEBTTS-E-EEEEETTTEEEEEETTSCEEEEEE-SSSSEEEEEEE---STTSSEEEEEEB
T ss_pred CCCcCCCcceEcCCCCE-EEEEcCCCEEEEECCCccEEEEEcCCCCCEEEEEEE---CCCCCEEEEEeC
No 102
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=35.63 E-value=25 Score=35.73 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=17.4
Q ss_pred ccceEEEeecCCCCccEEEE
Q 003012 384 LSTPVIADIDNDGVSEMIIA 403 (857)
Q Consensus 384 ~sspavaDiDGDG~~DIVv~ 403 (857)
.+...++||||||..|+|..
T Consensus 24 ~~~~~~~DinGdG~~dlv~~ 43 (175)
T PF12256_consen 24 LSQVSVADINGDGTADLVWS 43 (175)
T ss_pred ccEEEEEEeCCCCCEEEEEe
Confidence 35689999999999999984
No 103
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=35.08 E-value=56 Score=25.45 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=20.4
Q ss_pred ccCCCceeeEecccCCcccceEEEEEEEcCCCceEEEeEEeee
Q 003012 772 IFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLTF 814 (857)
Q Consensus 772 ~~~~~g~~~~~~~~~~~r~~~~v~v~~~~~~~~~~~d~~~~sf 814 (857)
.|.+||+|.|.+. ...++++|..-++..-++|
T Consensus 8 ~FT~PG~Y~l~~~-----------a~~~~~~G~~~s~~~t~tf 39 (41)
T TIGR03769 8 VFTKPGTYTLTVQ-----------ATATLTDGKVSSDPQTLTF 39 (41)
T ss_pred eeCCCeEEEEEEE-----------EEEEeCCCcEecCCEEEEE
Confidence 4899999987765 3334455555555555555
No 104
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=33.06 E-value=3.1e+02 Score=31.20 Aligned_cols=193 Identities=18% Similarity=0.170 Sum_probs=96.1
Q ss_pred ccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe
Q 003012 467 SPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (857)
Q Consensus 467 spavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~ 545 (857)
+....++|.- -|+-|+.+..+.+++ ++|+.+..+--.... +.-.-|+ .| -++.++.+..+.+|+.....
T Consensus 239 SVLCLqyd~r---viisGSSDsTvrvWDv~tge~l~tlihHcea----VLhlrf~-ng--~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 239 SVLCLQYDER---VIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA----VLHLRFS-NG--YMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred cEEeeeccce---EEEecCCCceEEEEeccCCchhhHHhhhcce----eEEEEEe-CC--EEEEecCCceeEEEeccCch
Confidence 4555666543 344456677888888 688765432111111 1111111 12 24444555556666543211
Q ss_pred eEE-EccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 546 IWE-QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 546 ~W~-~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
.-. .++--..-.++.+.|+|.- -|+.++.+..|-.|.-.++.++.... .-...++....++ .-+
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDRTikvW~~st~efvRtl~-----gHkRGIAClQYr~-------rlv 373 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFDDK---YIVSASGDRTIKVWSTSTCEFVRTLN-----GHKRGIACLQYRD-------RLV 373 (499)
T ss_pred HHHHHHHHhhhhhheeeeccccc---eEEEecCCceEEEEeccceeeehhhh-----cccccceehhccC-------eEE
Confidence 000 0000112235566777532 34555556788888887777653211 1122344554542 345
Q ss_pred EEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCCCCC
Q 003012 625 VTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHP 689 (857)
Q Consensus 625 vv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~~~p 689 (857)
|.++.+..+-+++...|.-..+-.|. -..+...-|| .--|+.+.++|.+.+|+......|
T Consensus 374 VSGSSDntIRlwdi~~G~cLRvLeGH--EeLvRciRFd---~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 374 VSGSSDNTIRLWDIECGACLRVLEGH--EELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred EecCCCceEEEEeccccHHHHHHhch--HHhhhheeec---CceeeeccccceEEEEecccccCC
Confidence 66677777777776554322211111 1112222244 344888899999999997654444
No 105
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=33.04 E-value=7.8e+02 Score=28.87 Aligned_cols=108 Identities=18% Similarity=0.324 Sum_probs=61.9
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEee----cCCCCeEEEEEeCCCcEEEEecCC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADI----NDDGKIELVTTDTHGNVAAWTAEG 543 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~----DGDG~~DLvv~~~~G~l~~~~~~G 543 (857)
..++...+ ...+|+|-+. ..||+++.+|+.++...+.. .......... ++....-+++++.++.+.+|.. .
T Consensus 244 i~v~~~~~-~~~~IvvLge-r~Lf~l~~~G~l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d-~ 318 (418)
T PF14727_consen 244 IQVVRFSS-SESDIVVLGE-RSLFCLKDNGSLRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED-T 318 (418)
T ss_pred EEEEEcCC-CCceEEEEec-ceEEEEcCCCeEEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC-C
Confidence 44555544 5567777664 36999999998877555542 1222333333 2223345888988999888854 5
Q ss_pred CeeEEEccccccccCCEEEecCCCCcccEEE-EecCCcEEE
Q 003012 544 KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVV-PTLSGNIYV 583 (857)
Q Consensus 544 ~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv-~t~~G~I~~ 583 (857)
+..|..... ..+-.+.++.+.+ ...+++ -+.+|.+.+
T Consensus 319 ~L~WsA~l~-~~PVal~v~~~~~--~~G~IV~Ls~~G~L~v 356 (418)
T PF14727_consen 319 TLVWSAQLP-HVPVALSVANFNG--LKGLIVSLSDEGQLSV 356 (418)
T ss_pred eEEEecCCC-CCCEEEEecccCC--CCceEEEEcCCCcEEE
Confidence 788997763 2222444555442 222333 344666554
No 106
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=32.86 E-value=6.4e+02 Score=32.11 Aligned_cols=138 Identities=14% Similarity=0.256 Sum_probs=76.0
Q ss_pred cceEEEEECCCCceE--EEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC--CCc-eeeeeeee
Q 003012 432 AGAIVVFNLDTKQVK--WTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH--HGK-IREKFPLE 506 (857)
Q Consensus 432 aG~v~a~d~~tG~i~--W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~--dG~-~~~~~~~~ 506 (857)
...|+.+|+..|++. |..+-..+ ...+. ..--.+.++.. -.++|-....|+.++. .|. .++.....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~-----v~~~~-p~~K~aqlt~e---~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIP-----VVDIA-PDSKFAQLTNE---QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcc-----eeEec-ccccccccCCC---ceEEEECCCceEEeccCCCCCceeeccccc
Confidence 356999999999985 65542210 00000 00112222221 3456666667888874 342 33321111
Q ss_pred ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEE
Q 003012 507 MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLS 585 (857)
Q Consensus 507 ~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~ 585 (857)
. .......++--.++| -|+|++..|.+.+|+..|.. -...++ ..+..+.-.|+..||+ -+++++...+.++.
T Consensus 574 Y-~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~-AKT~lp-~lG~pI~~iDvt~DGk--wilaTc~tyLlLi~ 645 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR-AKTALP-GLGDPIIGIDVTADGK--WILATCKTYLLLID 645 (794)
T ss_pred c-ccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh-hhhcCC-CCCCCeeEEEecCCCc--EEEEeecceEEEEE
Confidence 0 111123333445666 68999999999999877632 111222 3455667789999997 56666677666665
No 107
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=32.59 E-value=7.6e+02 Score=27.76 Aligned_cols=175 Identities=17% Similarity=0.118 Sum_probs=90.2
Q ss_pred ccEEEEeeCCeEEEEeCCCcee-eeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEcccccccc
Q 003012 479 LDILVGTSFGLFYVLDHHGKIR-EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQ 557 (857)
Q Consensus 479 ~DIvVg~~~G~Lyv~~~dG~~~-~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~ 557 (857)
.+|++++.+|.|.+|+.....+ -.+... +.+. .-+++| ...+++++.+|.+..++.++..............
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~-~plL-~c~F~d-----~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ 98 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHG-APLL-DCAFAD-----ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIR 98 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecC-Ccee-eeeccC-----CceEEEeccCceEEEEEecCCcceeeccCCCceE
Confidence 5899999999888887544311 112211 1111 234444 4578888889999999875444332211111111
Q ss_pred CCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 558 GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 558 ~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
.+... - +.--++.++++..|-+|+...-..... +. ....+...|+.+ .-|++++.+-.+.++|
T Consensus 99 ci~~~--~--~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d----~~kkVy~~~v~g-------~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 99 CIEYS--Y--EVGCVISGSWDKTIKFWDPRNKVVVGT--FD----QGKKVYCMDVSG-------NRLVVGTSDRKVLIYD 161 (323)
T ss_pred EEEee--c--cCCeEEEcccCccEEEEeccccccccc--cc----cCceEEEEeccC-------CEEEEeecCceEEEEE
Confidence 11111 0 122477777888899888753111100 11 112455667754 3577878877777777
Q ss_pred CCCCceEEEEeCCccee----eEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 638 GPTSCADVVDIGETSYS----MVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 638 g~~g~~~~i~~g~~~~s----~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
...-. ..+...+...- .+.+.- ++-| .++++-+|+|++=.
T Consensus 162 LRn~~-~~~q~reS~lkyqtR~v~~~p-n~eG---y~~sSieGRVavE~ 205 (323)
T KOG1036|consen 162 LRNLD-EPFQRRESSLKYQTRCVALVP-NGEG---YVVSSIEGRVAVEY 205 (323)
T ss_pred ccccc-chhhhccccceeEEEEEEEec-CCCc---eEEEeecceEEEEc
Confidence 55311 11111111111 122221 3333 77888889887643
No 108
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=31.36 E-value=6.5e+02 Score=28.42 Aligned_cols=197 Identities=18% Similarity=0.378 Sum_probs=105.6
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeee--eeeeccc---eeceeEEEeecCCCCeEEEEEeCCCcEEEEec
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREK--FPLEMAE---IQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~--~~~~~g~---i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~ 541 (857)
+..+-|-.||. -++.++.+|.|-+++ -+|+.... |+.. .+ ....+.+.+|-.|-. =+..++.+|++.+|.-
T Consensus 216 ~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAq-d~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri 292 (508)
T KOG0275|consen 216 VECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-DNFMMMDDAVLCISFSRDSE-MLASGSQDGKIKVWRI 292 (508)
T ss_pred hhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhh-cceeecccceEEEeecccHH-HhhccCcCCcEEEEEE
Confidence 45566777885 466777889888888 47876642 2222 11 123466677766642 1344566788877754
Q ss_pred -CCCee--EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 542 -EGKGI--WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 542 -~G~~~--W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
+|.-+ |.. ....++..--|-.|+. -|+-++.+..+..---+.|+.+..|. ....+.....+.
T Consensus 293 ~tG~ClRrFdr----AHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK~LKEfr--GHsSyvn~a~ft-------- 357 (508)
T KOG0275|consen 293 ETGQCLRRFDR----AHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGKCLKEFR--GHSSYVNEATFT-------- 357 (508)
T ss_pred ecchHHHHhhh----hhccCeeEEEEccCcc-hhhcccccceEEEeccccchhHHHhc--CccccccceEEc--------
Confidence 55432 221 1223444444555543 24444444444443345677665433 222233333332
Q ss_pred CCCeEEEEEecCCeEEEEcCCCC-ceEEEEeCCccee--eEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTS-CADVVDIGETSYS--MVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g-~~~~i~~g~~~~s--~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+....|+.++.+|.+-+++++++ |...+......++ .+.. +-.+ -..++|++....+|+.+..+
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~--~PKn-peh~iVCNrsntv~imn~qG 424 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVIL--LPKN-PEHFIVCNRSNTVYIMNMQG 424 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEE--cCCC-CceEEEEcCCCeEEEEeccc
Confidence 22346788899999999998875 3333332222222 2222 2222 34567777777777776543
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=30.89 E-value=6.6e+02 Score=30.22 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=51.8
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCCC----eeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGK----GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~----~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
..+..+-+.-+-+.+++.++.+|.+.+|+.+-. ..+.....+..--.+...-+|-||.. |..+..+|.|..|..
T Consensus 269 a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 269 AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDK 346 (641)
T ss_pred eeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeec
Confidence 345566667777888999999999999976322 23443333333345667788999986 777778999988884
No 110
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=30.27 E-value=7.7e+02 Score=27.11 Aligned_cols=196 Identities=16% Similarity=0.202 Sum_probs=92.8
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCcee-eeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIR-EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI 546 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~-~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~ 546 (857)
.+++-|--||+ =++.++.+|.+-+++-.--.. ..+... ..+ ..++. .-...+|++++.+|++.+|+.... .
T Consensus 86 VtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~-spV-n~vvl----hpnQteLis~dqsg~irvWDl~~~-~ 157 (311)
T KOG0315|consen 86 VTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPV-NTVVL----HPNQTELISGDQSGNIRVWDLGEN-S 157 (311)
T ss_pred eEEEEEeecCe-EEEecCCCceEEEEeccCcccchhccCC-CCc-ceEEe----cCCcceEEeecCCCcEEEEEccCC-c
Confidence 44555666665 355566666655555211100 011111 111 11222 123568999999999999986322 1
Q ss_pred EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeeccc----ccccCCccccceEEEeccCCCCCCCCe
Q 003012 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPY----PYRTHGRVMNQVLLVDLTKRGEKSKGL 622 (857)
Q Consensus 547 W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~----~~~~~g~~~s~~~v~DlDgDg~gDG~~ 622 (857)
+...........+.-.-+.-||.+ ++.++..|+.|+|+-.++.....+ .+....+. ++-.=+. .+..
T Consensus 158 c~~~liPe~~~~i~sl~v~~dgsm-l~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~---il~C~lS-----Pd~k 228 (311)
T KOG0315|consen 158 CTHELIPEDDTSIQSLTVMPDGSM-LAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH---ILRCLLS-----PDVK 228 (311)
T ss_pred cccccCCCCCcceeeEEEcCCCcE-EEEecCCccEEEEEccCCCccccceEhhheecccce---EEEEEEC-----CCCc
Confidence 221111111122223334456654 666777899999987654432211 11111111 1111111 1224
Q ss_pred EEEEEecCCeEEEEcCCCCceEEEEe-CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 623 TIVTTSFDGYLYLIDGPTSCADVVDI-GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 623 DLvv~s~dG~ly~~dg~~g~~~~i~~-g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
-|+..+.+-.+++++..+-+.....+ +...+ +.=..|-.||.. |+.++.++.+..|+.
T Consensus 229 ~lat~ssdktv~iwn~~~~~kle~~l~gh~rW--vWdc~FS~dg~Y-lvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFFKLELVLTGHQRW--VWDCAFSADGEY-LVTASSDHTARLWDL 287 (311)
T ss_pred EEEeecCCceEEEEecCCceeeEEEeecCCce--EEeeeeccCccE-EEecCCCCceeeccc
Confidence 56666777777777655432222211 22111 222346667753 566667777777765
No 111
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=30.19 E-value=51 Score=26.35 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=18.0
Q ss_pred EEEEEeeceeEEEEeecCcc
Q 003012 138 EIALATYNGEVLFFRVSGYM 157 (857)
Q Consensus 138 ~~~~~~~~g~~~~~~~~g~~ 157 (857)
=|+++|-+|+|++++.+|+.
T Consensus 25 LiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 25 LIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred EEEEEECCCeEEEEECCCcC
Confidence 47899999999999999983
No 112
>PF12256 TcdB_toxin_midN: Insecticide toxin TcdB middle/N-terminal region; InterPro: IPR022045 This domain family is found in bacteria and archaea, and is typically between 164 and 180 amino acids in length. The family is found in association with PF05593 from PFAM. This domain is the N-terminal-sided middle region of the bacterial insecticide toxin TcdB.
Probab=30.09 E-value=86 Score=31.87 Aligned_cols=20 Identities=45% Similarity=0.616 Sum_probs=17.5
Q ss_pred ceeEEEeecCCCCeEEEEEe
Q 003012 512 GAVVAADINDDGKIELVTTD 531 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~ 531 (857)
..+.++||||||..|++...
T Consensus 25 ~~~~~~DinGdG~~dlv~~~ 44 (175)
T PF12256_consen 25 SQVSVADINGDGTADLVWSS 44 (175)
T ss_pred cEEEEEEeCCCCCEEEEEec
Confidence 46899999999999999843
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=30.00 E-value=8.3e+02 Score=27.42 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=63.4
Q ss_pred ecCCCCeEEEEEeCCCcEEEEec--CCCeeEEEc-cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeeccc
Q 003012 519 INDDGKIELVTTDTHGNVAAWTA--EGKGIWEQH-LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPY 595 (857)
Q Consensus 519 ~DGDG~~DLvv~~~~G~l~~~~~--~G~~~W~~~-~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~ 595 (857)
+|-.|.. ++++...+.+.+|+. -+++-|..- +.........-.-|-.||+. |++.+..+.+++++.-+|.....+
T Consensus 148 fDp~GLi-fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 148 FDPEGLI-FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred ECCCCcE-EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCcEeeeE
Confidence 5555522 222333346777764 344444322 21111112233446688875 777788899999999899876655
Q ss_pred ccccCCc-cccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE
Q 003012 596 PYRTHGR-VMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD 644 (857)
Q Consensus 596 ~~~~~g~-~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~ 644 (857)
....... +. .-+-+-. | ..-|+.++.+|.+++++..++...
T Consensus 226 s~~~~~~~~~---~~a~ftP----d-s~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 226 SGYPNAGNLP---LSATFTP----D-SKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred eeccCCCCcc---eeEEECC----C-CcEEEEecCCCcEEEEEcCCCcEe
Confidence 4433322 21 1122221 1 234667777899988887776543
No 114
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=28.96 E-value=4.7e+02 Score=28.62 Aligned_cols=142 Identities=20% Similarity=0.283 Sum_probs=0.0
Q ss_pred EEEEeeCCeEEEEeCCC-----------ceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-------C
Q 003012 481 ILVGTSFGLFYVLDHHG-----------KIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-------E 542 (857)
Q Consensus 481 IvVg~~~G~Lyv~~~dG-----------~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-------~ 542 (857)
+++++.+|.|.++.-.- .....++...+.+.. +++.| ++++...+|.++.|.- .
T Consensus 25 l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~-~~f~d-------~~Lls~gdG~V~gw~W~E~~es~~ 96 (325)
T KOG0649|consen 25 LFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYY-LAFHD-------DFLLSGGDGLVYGWEWNEEEESLA 96 (325)
T ss_pred EEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeee-eeeeh-------hheeeccCceEEEeeehhhhhhcc
Q ss_pred CCeeEEEccccccccCCEEEecCC---C-CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 543 GKGIWEQHLKSLVTQGPSIGDVDG---D-GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 543 G~~~W~~~~~~~~~~~vavgDlDG---D-G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
-+++|+...+.... .+.+-++|. | -..-|+++..++.+|.++-.+|++...+.-.+. +.-.++.-.-+
T Consensus 97 ~K~lwe~~~P~~~~-~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD--YvH~vv~R~~~----- 168 (325)
T KOG0649|consen 97 TKRLWEVKIPMQVD-AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD--YVHSVVGRNAN----- 168 (325)
T ss_pred chhhhhhcCccccC-cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc--eeeeeeecccC-----
Q ss_pred CCCeEEEEEecCCeEEEEcCCCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTS 641 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g 641 (857)
..|+.+.+||.+.+.+.+++
T Consensus 169 ---~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 169 ---GQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred ---cceeecCCCccEEEEecccc
No 115
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=27.55 E-value=1.2e+03 Score=28.46 Aligned_cols=211 Identities=11% Similarity=-0.045 Sum_probs=95.6
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEecCCC-e--eEEEcccc---ccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTAEGK-G--IWEQHLKS---LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~-~--~W~~~~~~---~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
.+.+..+.-.--.=++.|.++|.+.+|+..+. . .+...... ..+....+..-+-.+ .+++.++.+|.|..|+-
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHN-TEFFSLSSDGSICSWDT 322 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCC-CceEEEecCCcEeeeec
Confidence 34444444333334556678899999987332 2 33321111 111122334445555 78999989999988853
Q ss_pred CC------CCeeccccc-ccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE------EEeCCcce
Q 003012 587 KD------GSKVRPYPY-RTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV------VDIGETSY 653 (857)
Q Consensus 587 ~~------G~~~~~~~~-~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~------i~~g~~~~ 653 (857)
.. +........ .....-........+=. ---..+++++..|.+|.-...+..... ...-....
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~----~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~ 398 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEP----TDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHI 398 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeecc----CCCceEEEEcCCcEEEEEeccCCcccccccccccccccccC
Confidence 21 111111110 00000011112222210 001247889999999975433322221 10000001
Q ss_pred eeEEEEeecCCCCccEEEEecCCcEEEEeCCCCCCCcccceecccCCcceeeeccccceeecCCcccccCCCCCeeEEEE
Q 003012 654 SMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKAWRSINQGRNNVAIRYNRAGIYVTHPSRAFRDEEGRNFWVEI 733 (857)
Q Consensus 654 s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~~~pl~~W~s~~~G~~~~~~~~~~~Gi~~~~~~~~~~D~dG~~~~v~~ 733 (857)
..+.+.+.+-= ...++.+..+-.|..|.......|+..|-....-.-...=+.. .|+-.+..|++|.-....+
T Consensus 399 g~v~~v~~nPF-~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt------rpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 399 GPVYAVSRNPF-YPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT------RPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred cceEeeecCCC-ccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc------CceEEEEEcCCCceehhhh
Confidence 11222223322 2345566668889999887555666554332211000011111 2333456778887655444
Q ss_pred EE
Q 003012 734 EI 735 (857)
Q Consensus 734 ~i 735 (857)
..
T Consensus 472 l~ 473 (555)
T KOG1587|consen 472 LQ 473 (555)
T ss_pred hc
Confidence 43
No 116
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.03 E-value=1.3e+03 Score=28.61 Aligned_cols=266 Identities=15% Similarity=0.223 Sum_probs=121.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.+..||.+|....-..++ + ..+.+ +..-++- +.=|++|+.+.+|-+|+ +++..+..|.....-+
T Consensus 35 G~V~IWnyetqtmVksfeV--~--~~PvR----a~kfiaR-----knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyI- 100 (794)
T KOG0276|consen 35 GDVQIWNYETQTMVKSFEV--S--EVPVR----AAKFIAR-----KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYI- 100 (794)
T ss_pred CeeEEEecccceeeeeeee--c--ccchh----hheeeec-----cceEEEecCCceEEEEecccceeeEEeeccccce-
Confidence 6788888887555443332 1 11221 2222332 23466677778899999 6888777776653222
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEc--cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQH--LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~--~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
..+++.- -.+-++.++.+-.+.+|+-.+. |... ..+ ..+.+.-.=||---..-++-++-+..+-+|.- |
T Consensus 101 R~iavHP----t~P~vLtsSDDm~iKlW~we~~--wa~~qtfeG-H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl--g 171 (794)
T KOG0276|consen 101 RSIAVHP----TLPYVLTSSDDMTIKLWDWENE--WACEQTFEG-HEHYVMQVAFNPKDPNTFASASLDRTVKVWSL--G 171 (794)
T ss_pred eeeeecC----CCCeEEecCCccEEEEeeccCc--eeeeeEEcC-cceEEEEEEecCCCccceeeeeccccEEEEEc--C
Confidence 2233321 1223334444444555543322 3211 111 01111111122221222444445666666663 4
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC-CceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT-SCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~-g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
+....|....+ ...+...|+-. ++..+-++.++.|-.+-+.|=.+ .|.+.+.--....+.+.+- --.+=
T Consensus 172 s~~~nfTl~gH---ekGVN~Vdyy~---~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fh----p~lpi 241 (794)
T KOG0276|consen 172 SPHPNFTLEGH---EKGVNCVDYYT---GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFH----PELPI 241 (794)
T ss_pred CCCCceeeecc---ccCcceEEecc---CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEec----CCCcE
Confidence 44333333222 22344555543 34456777777776665555333 2332221001111111110 11222
Q ss_pred EEEEecCCcEEEEeCCC-------CCCCcccceecc-cCCcceeeeccccceeecCCc---ccccCCCCCeeEE
Q 003012 669 LIVTTMNGNVFCFSTPA-------PHHPLKAWRSIN-QGRNNVAIRYNRAGIYVTHPS---RAFRDEEGRNFWV 731 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~~~-------~~~pl~~W~s~~-~G~~~~~~~~~~~Gi~~~~~~---~~~~D~dG~~~~v 731 (857)
|+.++.+|.|..|.+.+ .+.--+.|--.. .+.+.++-.+....+++.-+. ..-+|..|+-+|-
T Consensus 242 iisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa 315 (794)
T KOG0276|consen 242 IISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWA 315 (794)
T ss_pred EEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEE
Confidence 55668899999998754 244456675432 444444444443344433221 3356677765554
No 117
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=26.18 E-value=1.8e+02 Score=27.06 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=27.7
Q ss_pred eCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEE
Q 003012 486 SFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQ 549 (857)
Q Consensus 486 ~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~ 549 (857)
.+|.|++++.+|..+|..... .. .... .++...+|++.+++..|+.+|+.
T Consensus 62 ~dGnLvl~~~~g~~vW~S~t~-~~--~~~~-----------~~~L~ddGnlvl~~~~~~~~W~S 111 (114)
T smart00108 62 SDGNLVLYDGDGRVVWSSNTT-GA--NGNY-----------VLVLLDDGNLVIYDSDGNFLWQS 111 (114)
T ss_pred CCCCEEEEeCCCCEEEEeccc-CC--CCce-----------EEEEeCCCCEEEECCCCCEEeCC
Confidence 355666677777777653222 01 1111 22334467777777778888863
No 118
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.93 E-value=1.4e+03 Score=28.71 Aligned_cols=139 Identities=19% Similarity=0.288 Sum_probs=75.8
Q ss_pred cEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee---EEEcccc---
Q 003012 480 DILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI---WEQHLKS--- 553 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~---W~~~~~~--- 553 (857)
-++-|+-+|++-++.-....+--|. ....-+.++=+--||. -.|||..+|..++|+..|... |......
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~----Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWN----DLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cEeecccccceEEeecCcCeeEeeh----hhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 4556666777777664333221221 1112233334445664 367888999999998876544 3222111
Q ss_pred ---ccccCCEE--EecCCCCcccEEEEecCCcEEEEECCCCCeecccccccC--CccccceEEEeccCCCCCCCCeEEEE
Q 003012 554 ---LVTQGPSI--GDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH--GRVMNQVLLVDLTKRGEKSKGLTIVT 626 (857)
Q Consensus 554 ---~~~~~vav--gDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~--g~~~s~~~v~DlDgDg~gDG~~DLvv 626 (857)
.--.++.+ ++.+ .|+|++.+.+|.+|++.+-..+..|..... .++.+.... | | .-||.
T Consensus 499 ~~~~rITG~Q~~p~~~~-----~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~---D------g-k~IVs 563 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPD-----EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS---D------G-KHIVS 563 (712)
T ss_pred ccCceeeeeEecCCCCC-----eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc---C------C-CEEEE
Confidence 00111222 2222 589999999999999865555544432211 222222211 2 2 46788
Q ss_pred EecCCeEEEEcC
Q 003012 627 TSFDGYLYLIDG 638 (857)
Q Consensus 627 ~s~dG~ly~~dg 638 (857)
++.+..+|+++-
T Consensus 564 ~seDs~VYiW~~ 575 (712)
T KOG0283|consen 564 ASEDSWVYIWKN 575 (712)
T ss_pred eecCceEEEEeC
Confidence 889999998874
No 119
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=25.84 E-value=9.3e+02 Score=29.77 Aligned_cols=30 Identities=7% Similarity=0.175 Sum_probs=19.4
Q ss_pred ecCCCCccEEEEecCCcEEEEeCCCCCCCcc
Q 003012 661 VDGGDDLDLIVTTMNGNVFCFSTPAPHHPLK 691 (857)
Q Consensus 661 lDGDG~~DLvv~t~~G~V~~~~~~~~~~pl~ 691 (857)
+--||+. +.....+|.+.+|++.+...|+.
T Consensus 728 WSpdGr~-~AtVcKDg~~rVy~Prs~e~pv~ 757 (1012)
T KOG1445|consen 728 WSPDGRR-IATVCKDGTLRVYEPRSREQPVY 757 (1012)
T ss_pred ECCCCcc-eeeeecCceEEEeCCCCCCCccc
Confidence 4456664 44556788888888866555543
No 120
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=24.84 E-value=1.1e+03 Score=26.98 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=60.7
Q ss_pred CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC-CceEEE
Q 003012 568 GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT-SCADVV 646 (857)
Q Consensus 568 G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~-g~~~~i 646 (857)
|.+=++++..-|.|++++...++....+ +..|...+.+..-- +.-.-|+.++.|-.+-+.+-.+ .|...+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~~~~--~ghG~sINeik~~p-------~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCSKNY--RGHGGSINEIKFHP-------DRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhccce--eccCccchhhhcCC-------CCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 5566777777888999988766654322 12222222211110 1112244555565555444333 233332
Q ss_pred EeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 647 DIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 647 ~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
.--+....-+...|++.||+ -|+.+.|+-.+..|+...+
T Consensus 175 GG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChh
Confidence 11122233577789999998 5777789999999998743
No 121
>PF15418 DUF4625: Domain of unknown function (DUF4625)
Probab=23.97 E-value=4.8e+02 Score=25.55 Aligned_cols=82 Identities=16% Similarity=0.181 Sum_probs=45.0
Q ss_pred CCCeeEEEEEEeecccCCCCCCCCeEEEE------EEecCCccccceeeeeccccCCCc-----eeeEecccCCcccceE
Q 003012 725 EGRNFWVEIEIVDEYRFPSGSQAPYNVTT------TLLVPGNYQGERRIKQSQIFARRG-----KYRIKLPTVGVRTTGT 793 (857)
Q Consensus 725 dG~~~~v~~~i~D~~~~~~~~~~~y~v~v------~~~~~g~~~g~r~~~~~~~~~~~g-----~~~~~~~~~~~r~~~~ 793 (857)
.|+.+-++..|.|.... ..|+|.| ---..-.+.+.........|+.++ .+...+.+|..-..|.
T Consensus 34 ~G~~ihfe~~i~d~~~i-----~si~VeIH~nfd~H~h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~ 108 (132)
T PF15418_consen 34 RGDDIHFEADISDNSAI-----KSIKVEIHNNFDHHTHSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGD 108 (132)
T ss_pred cCCcEEEEEEEEcccce-----eEEEEEEecCcCcccccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcc
Confidence 46667777777776433 2466666 111100111122233344444333 3444566777766776
Q ss_pred E--EEEEEcCCCceEEEeEE
Q 003012 794 V--LVEMVDKNGLYFSDEFS 811 (857)
Q Consensus 794 v--~v~~~~~~~~~~~d~~~ 811 (857)
. .+.++|+.|..-+=+..
T Consensus 109 YH~~i~VtD~~Gn~~~~~~~ 128 (132)
T PF15418_consen 109 YHFMITVTDAAGNQTEEERS 128 (132)
T ss_pred eEEEEEEEECCCCEEEEEEE
Confidence 6 89999999987764433
No 122
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=23.70 E-value=2.1e+02 Score=26.71 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=28.2
Q ss_pred eCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEE
Q 003012 486 SFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQ 549 (857)
Q Consensus 486 ~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~ 549 (857)
.+|.|++++.+|..+|..... + ..... .++...+|++.+++.+|..+|+.
T Consensus 63 ~dGnLvl~~~~g~~vW~S~~~-~--~~~~~-----------~~~L~ddGnlvl~~~~~~~~W~S 112 (116)
T cd00028 63 SDGNLVIYDGSGTVVWSSNTT-R--VNGNY-----------VLVLLDDGNLVLYDSDGNFLWQS 112 (116)
T ss_pred cCCCeEEEcCCCcEEEEeccc-C--CCCce-----------EEEEeCCCCEEEECCCCCEEEcC
Confidence 345666777777777643322 1 01111 22334467777777778888874
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=20.69 E-value=1.4e+03 Score=26.80 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=71.0
Q ss_pred EEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccc
Q 003012 526 ELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVM 604 (857)
Q Consensus 526 DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~ 604 (857)
+++-+..++++.+|+. .+...-+....+ .+...|+.-||. .|+..+.+..+-.++..+-.+...| ...+...
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~~~--sA~g~k~ 386 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQTF--SAEGFKC 386 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeecCc----ceeeEeeccCCe-EEeeecCCCceeeeecccccEEEEe--ecccccc
Confidence 4455556678888884 555555554433 334556666663 5666666666666665433332221 1111111
Q ss_pred -cceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEE
Q 003012 605 -NQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFC 680 (857)
Q Consensus 605 -s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~ 680 (857)
+...-+=| ..+..-+++|+.+|.+|+++-.++..+.+-.....-+.+...-+|.-|.. ++.++.++.+..
T Consensus 387 asDwtrvvf-----Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~-Llsadk~~~v~l 457 (459)
T KOG0288|consen 387 ASDWTRVVF-----SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG-LLSADKQKAVTL 457 (459)
T ss_pred ccccceeEE-----CCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch-hhcccCCcceEe
Confidence 11111112 23345577888899999998777765543222222212233335555543 444444444443
Done!