Query 003012
Match_columns 857
No_of_seqs 427 out of 2175
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 10:03:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bwr_A Psathyrella velutina le 99.8 1.8E-19 6.3E-24 203.0 21.0 262 386-683 60-365 (401)
2 4a7k_A Aldos-2-ulose dehydrata 99.8 2.2E-17 7.7E-22 193.8 31.9 259 385-683 35-374 (900)
3 2bwr_A Psathyrella velutina le 99.8 9.2E-18 3.2E-22 189.1 23.2 264 384-684 5-311 (401)
4 2zux_A YESW protein; beta-prop 99.7 1.7E-14 6E-19 165.3 35.5 247 386-685 269-532 (591)
5 2zux_A YESW protein; beta-prop 99.7 3.5E-15 1.2E-19 171.0 28.7 249 385-665 115-425 (591)
6 4a7k_A Aldos-2-ulose dehydrata 99.7 7.7E-16 2.6E-20 180.9 23.5 261 385-675 95-415 (900)
7 2zuy_A YESX protein; beta-prop 99.7 2.4E-14 8.2E-19 164.6 28.4 251 385-666 119-430 (620)
8 2zuy_A YESX protein; beta-prop 99.6 3.9E-13 1.3E-17 154.6 36.2 255 386-685 273-553 (620)
9 3ije_A Integrin alpha-V; integ 99.5 1.1E-13 3.7E-18 171.4 17.6 183 462-684 220-438 (967)
10 3q7m_A Lipoprotein YFGL, BAMB; 99.5 4.1E-11 1.4E-15 131.3 36.2 209 433-682 153-375 (376)
11 3v4v_A Integrin alpha-4; cell 99.5 2.3E-12 7.9E-17 151.9 24.1 211 431-684 188-431 (597)
12 3ije_A Integrin alpha-V; integ 99.4 2.9E-12 9.8E-17 158.8 16.7 176 383-586 222-437 (967)
13 3v4v_A Integrin alpha-4; cell 99.3 5E-12 1.7E-16 149.1 14.9 178 383-586 218-430 (597)
14 3vi3_A Integrin alpha-5; beta 99.3 1.3E-11 4.4E-16 146.3 15.8 170 511-684 232-449 (632)
15 3vi3_A Integrin alpha-5; beta 99.3 3.6E-11 1.2E-15 142.5 17.7 178 382-586 230-448 (632)
16 3fcs_A Integrin, alpha 2B; bet 99.2 6.5E-11 2.2E-15 146.2 16.1 176 383-586 235-450 (959)
17 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.8E-09 2.7E-13 113.1 29.8 173 433-637 198-375 (376)
18 3t3p_A Integrin alpha-IIB; int 99.1 3.3E-10 1.1E-14 129.4 15.7 176 383-586 235-450 (457)
19 3hxj_A Pyrrolo-quinoline quino 99.1 3.6E-08 1.2E-12 104.6 29.9 206 433-684 117-323 (330)
20 3k6s_A Integrin alpha-X; cell 99.1 2.5E-09 8.6E-14 134.3 21.8 203 471-684 339-597 (1095)
21 1flg_A Protein (quinoprotein e 99.1 7.8E-08 2.7E-12 113.4 32.8 83 60-156 42-138 (582)
22 3fcs_A Integrin, alpha 2B; bet 99.1 7.9E-10 2.7E-14 136.7 16.2 172 462-639 233-451 (959)
23 1kb0_A Quinohemoprotein alcoho 99.0 1.7E-07 5.9E-12 112.4 34.1 83 60-156 53-149 (677)
24 2ad6_A Methanol dehydrogenase 99.0 3.6E-07 1.2E-11 107.4 35.1 83 60-156 38-136 (571)
25 3t3p_A Integrin alpha-IIB; int 99.0 2.5E-09 8.5E-14 122.2 15.8 172 462-639 233-451 (457)
26 3k6s_A Integrin alpha-X; cell 99.0 3.6E-09 1.2E-13 132.9 16.3 176 383-587 386-597 (1095)
27 1w6s_A Methanol dehydrogenase 98.9 1.9E-06 6.5E-11 101.9 35.5 87 60-156 38-142 (599)
28 1yiq_A Quinohemoprotein alcoho 98.9 1.5E-06 5.1E-11 104.4 32.9 83 60-156 46-142 (689)
29 1kv9_A Type II quinohemoprotei 98.8 2.8E-06 9.4E-11 101.7 32.2 83 60-156 42-138 (668)
30 1flg_A Protein (quinoprotein e 98.7 8.1E-06 2.8E-10 96.2 29.4 198 434-645 79-360 (582)
31 3hxj_A Pyrrolo-quinoline quino 98.6 1.3E-05 4.3E-10 84.8 26.8 167 433-639 157-323 (330)
32 2ad6_A Methanol dehydrogenase 98.5 3.3E-05 1.1E-09 90.7 29.3 152 433-597 125-344 (571)
33 1w6s_A Methanol dehydrogenase 98.4 2.6E-05 8.9E-10 92.3 23.7 199 433-645 73-347 (599)
34 1yiq_A Quinohemoprotein alcoho 98.3 1.6E-05 5.3E-10 95.5 21.4 196 433-645 80-343 (689)
35 1kv9_A Type II quinohemoprotei 98.3 3.1E-05 1.1E-09 92.5 23.8 193 433-644 76-337 (668)
36 1kb0_A Quinohemoprotein alcoho 98.3 2E-05 7E-10 94.4 20.6 194 433-645 87-351 (677)
37 2hz6_A Endoplasmic reticulum t 98.2 1.2E-06 4E-11 97.0 7.5 175 433-646 19-198 (369)
38 3no2_A Uncharacterized protein 98.2 0.0004 1.4E-08 73.5 26.0 183 432-646 14-201 (276)
39 2be1_A Serine/threonine-protei 98.0 8.9E-05 3E-09 81.6 15.8 195 431-645 18-236 (339)
40 4gqb_B Methylosome protein 50; 97.8 0.0095 3.3E-07 64.6 28.1 227 433-685 103-331 (344)
41 3no2_A Uncharacterized protein 97.8 0.0017 6E-08 68.5 21.0 144 433-597 56-204 (276)
42 2hz6_A Endoplasmic reticulum t 97.7 4.4E-05 1.5E-09 84.3 7.7 184 480-696 11-200 (369)
43 1q7f_A NHL, brain tumor CG1071 97.7 0.07 2.4E-06 54.9 31.8 244 383-683 28-278 (286)
44 1l0q_A Surface layer protein; 97.5 0.17 5.9E-06 54.1 37.1 216 433-685 54-275 (391)
45 4gqb_B Methylosome protein 50; 97.4 0.051 1.8E-06 58.8 26.0 201 470-685 87-289 (344)
46 1l0q_A Surface layer protein; 97.3 0.2 6.7E-06 53.7 30.3 217 432-685 11-233 (391)
47 4g56_B MGC81050 protein; prote 97.3 0.052 1.8E-06 58.7 25.6 226 433-685 115-343 (357)
48 1r5m_A SIR4-interacting protei 97.3 0.17 5.9E-06 54.0 29.5 227 433-685 68-319 (425)
49 1got_B GT-beta; complex (GTP-b 97.2 0.3 1E-05 51.9 33.4 222 433-684 77-300 (340)
50 2be1_A Serine/threonine-protei 97.2 0.002 6.8E-08 70.9 12.9 195 480-693 12-236 (339)
51 4g56_B MGC81050 protein; prote 97.2 0.032 1.1E-06 60.4 22.5 202 469-685 98-301 (357)
52 3ow8_A WD repeat-containing pr 97.2 0.32 1.1E-05 51.6 32.3 217 432-683 101-319 (321)
53 3vgz_A Uncharacterized protein 97.2 0.22 7.4E-06 52.2 28.0 223 432-685 68-303 (353)
54 4a11_B DNA excision repair pro 97.2 0.25 8.5E-06 52.5 28.5 229 432-685 121-365 (408)
55 3ei3_B DNA damage-binding prot 97.0 0.34 1.2E-05 51.8 28.0 225 433-685 96-339 (383)
56 3ow8_A WD repeat-containing pr 97.0 0.48 1.6E-05 50.2 29.1 220 433-685 58-279 (321)
57 4ery_A WD repeat-containing pr 97.0 0.42 1.4E-05 49.6 32.5 220 433-685 45-268 (312)
58 2ymu_A WD-40 repeat protein; u 97.0 0.5 1.7E-05 53.4 30.5 190 468-682 388-577 (577)
59 3vl1_A 26S proteasome regulato 97.0 0.26 8.9E-06 53.2 26.9 222 433-686 119-366 (420)
60 3vl1_A 26S proteasome regulato 97.0 0.11 3.8E-06 56.1 23.8 203 473-691 105-328 (420)
61 3odt_A Protein DOA1; ubiquitin 97.0 0.19 6.5E-06 51.4 24.3 180 480-685 116-296 (313)
62 3jrp_A Fusion protein of prote 96.9 0.53 1.8E-05 49.4 28.5 205 468-684 58-286 (379)
63 1gxr_A ESG1, transducin-like e 96.9 0.48 1.6E-05 48.8 29.7 214 433-682 119-334 (337)
64 2vdu_B TRNA (guanine-N(7)-)-me 96.9 0.21 7.1E-06 55.4 25.5 162 513-685 104-271 (450)
65 1p22_A F-BOX/WD-repeat protein 96.9 0.43 1.5E-05 52.4 27.8 210 433-684 153-364 (435)
66 4e54_B DNA damage-binding prot 96.8 0.035 1.2E-06 61.5 18.7 231 432-684 186-429 (435)
67 3ei3_B DNA damage-binding prot 96.8 0.25 8.6E-06 52.9 25.0 201 468-685 76-282 (383)
68 2ynn_A Coatomer subunit beta'; 96.8 0.61 2.1E-05 48.6 31.4 223 433-685 35-259 (304)
69 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.48 1.6E-05 52.0 27.5 211 432-685 178-391 (445)
70 1r5m_A SIR4-interacting protei 96.8 0.3 1E-05 52.2 25.1 224 433-683 171-423 (425)
71 1sq9_A Antiviral protein SKI8; 96.7 0.29 9.9E-06 52.2 24.4 208 468-683 124-393 (397)
72 3k26_A Polycomb protein EED; W 96.7 0.53 1.8E-05 49.1 25.9 145 433-590 44-194 (366)
73 2ymu_A WD-40 repeat protein; u 96.7 1.1 3.7E-05 50.6 29.9 192 468-684 347-538 (577)
74 3bws_A Protein LP49; two-domai 96.6 0.94 3.2E-05 49.0 28.1 215 433-684 191-431 (433)
75 3vgz_A Uncharacterized protein 96.6 0.79 2.7E-05 47.8 26.4 190 433-644 111-307 (353)
76 2ovr_B FBW7, F-BOX/WD repeat p 96.6 0.66 2.2E-05 50.9 26.9 214 433-684 219-441 (445)
77 3zwl_B Eukaryotic translation 96.6 0.64 2.2E-05 48.4 25.6 200 468-685 35-249 (369)
78 1k8k_C P40, ARP2/3 complex 41 96.6 0.92 3.1E-05 47.6 26.7 223 433-685 30-274 (372)
79 2vdu_B TRNA (guanine-N(7)-)-me 96.5 1 3.5E-05 49.7 28.0 203 467-683 104-337 (450)
80 4aez_A CDC20, WD repeat-contai 96.5 1.2 4.1E-05 48.2 29.5 215 433-684 113-335 (401)
81 4aez_A CDC20, WD repeat-contai 96.5 0.97 3.3E-05 48.9 27.1 217 433-685 156-380 (401)
82 3fm0_A Protein CIAO1; WDR39,SG 96.5 0.6 2.1E-05 49.7 24.9 202 468-683 19-223 (345)
83 3mkq_A Coatomer beta'-subunit; 96.4 1.2 4.2E-05 52.6 29.5 223 433-685 35-259 (814)
84 1vyh_C Platelet-activating fac 96.4 1.5 5.1E-05 48.0 32.2 222 433-684 130-368 (410)
85 1got_B GT-beta; complex (GTP-b 96.4 1.2 4.2E-05 47.1 28.5 190 471-682 149-340 (340)
86 3odt_A Protein DOA1; ubiquitin 96.4 1 3.4E-05 45.8 26.5 213 433-685 39-255 (313)
87 1jmx_B Amine dehydrogenase; ox 96.4 0.66 2.3E-05 48.2 23.9 143 433-595 21-182 (349)
88 1pby_B Quinohemoprotein amine 96.4 0.97 3.3E-05 46.5 25.0 143 432-592 10-167 (337)
89 1gxr_A ESG1, transducin-like e 96.3 1.2 3.9E-05 45.8 29.7 195 468-685 100-296 (337)
90 1yfq_A Cell cycle arrest prote 96.3 0.56 1.9E-05 48.7 23.0 199 468-685 59-282 (342)
91 4e54_B DNA damage-binding prot 96.3 0.22 7.4E-06 55.0 20.7 191 480-685 134-327 (435)
92 3i2n_A WD repeat-containing pr 96.3 0.38 1.3E-05 50.2 21.6 200 473-684 125-352 (357)
93 2aq5_A Coronin-1A; WD40 repeat 96.3 0.58 2E-05 50.6 23.4 206 467-685 83-299 (402)
94 3hx6_A Type 4 fimbrial biogene 96.2 0.28 9.5E-06 57.1 21.2 156 525-685 86-284 (570)
95 3v7d_B Cell division control p 96.1 1.4 4.8E-05 48.3 26.1 218 433-685 142-381 (464)
96 2xzm_R RACK1; ribosome, transl 96.1 1.7 5.9E-05 45.9 27.7 221 432-683 97-338 (343)
97 3dm0_A Maltose-binding peripla 96.1 2.8 9.5E-05 49.2 30.1 223 431-683 450-691 (694)
98 2pm9_A Protein WEB1, protein t 96.1 0.25 8.6E-06 53.0 19.5 234 432-685 44-294 (416)
99 1sq9_A Antiviral protein SKI8; 96.1 0.75 2.6E-05 49.0 23.0 198 480-685 83-322 (397)
100 3jrp_A Fusion protein of prote 96.0 0.94 3.2E-05 47.4 23.1 206 468-685 14-240 (379)
101 3zwl_B Eukaryotic translation 96.0 1.7 5.9E-05 45.0 28.8 219 433-684 96-345 (369)
102 3f3f_A Nucleoporin SEH1; struc 96.0 1.6 5.5E-05 44.5 25.7 213 468-685 14-249 (351)
103 1rwi_B Serine/threonine-protei 96.0 1.5 5E-05 44.1 27.2 189 471-685 72-264 (270)
104 2pm9_A Protein WEB1, protein t 96.0 1.2 4E-05 47.7 23.8 206 468-685 116-337 (416)
105 4ery_A WD repeat-containing pr 95.9 1.9 6.3E-05 44.6 33.0 220 433-683 87-310 (312)
106 1p22_A F-BOX/WD-repeat protein 95.9 0.98 3.3E-05 49.5 23.3 210 433-685 193-414 (435)
107 4a11_B DNA excision repair pro 95.9 1.5 5E-05 46.5 23.9 205 468-685 46-276 (408)
108 2pbi_B Guanine nucleotide-bind 95.8 2.6 8.8E-05 45.0 32.4 221 433-684 86-314 (354)
109 3mkq_A Coatomer beta'-subunit; 95.7 4.3 0.00015 47.9 29.6 220 432-684 76-301 (814)
110 1q7f_A NHL, brain tumor CG1071 95.7 2.2 7.7E-05 43.4 25.4 199 466-685 30-238 (286)
111 1k8k_C P40, ARP2/3 complex 41 95.6 2.6 9E-05 44.0 24.8 199 469-684 12-232 (372)
112 3i2n_A WD repeat-containing pr 95.6 2.6 8.8E-05 43.7 24.9 203 468-684 21-242 (357)
113 3dsm_A Uncharacterized protein 95.6 2.7 9.3E-05 44.5 24.6 214 433-685 64-302 (328)
114 1nr0_A Actin interacting prote 95.6 4.7 0.00016 46.6 28.4 200 468-685 62-270 (611)
115 2xyi_A Probable histone-bindin 95.5 1.3 4.5E-05 48.7 22.3 205 468-684 184-409 (430)
116 3iz6_a 40S ribosomal protein R 95.4 3.6 0.00012 44.3 29.6 202 474-685 166-375 (380)
117 1pgu_A Actin interacting prote 95.4 3 0.0001 47.0 25.6 201 468-684 119-327 (615)
118 3fvz_A Peptidyl-glycine alpha- 95.4 3.3 0.00011 43.7 31.9 227 432-684 68-321 (329)
119 1yfq_A Cell cycle arrest prote 95.3 0.58 2E-05 48.6 17.9 193 471-685 17-225 (342)
120 3bws_A Protein LP49; two-domai 95.3 2.3 8E-05 45.8 23.3 219 434-685 102-334 (433)
121 2ynn_A Coatomer subunit beta'; 95.3 3.3 0.00011 42.9 28.0 220 432-683 76-300 (304)
122 3jro_A Fusion protein of prote 95.2 1.4 4.9E-05 52.6 23.3 230 433-685 31-285 (753)
123 3iz6_a 40S ribosomal protein R 95.2 0.9 3.1E-05 49.1 19.6 203 468-685 69-280 (380)
124 3hx6_A Type 4 fimbrial biogene 95.2 0.83 2.8E-05 53.1 19.9 103 434-541 165-282 (570)
125 3dm0_A Maltose-binding peripla 95.2 6.7 0.00023 45.9 29.5 197 468-685 433-632 (694)
126 1nr0_A Actin interacting prote 95.1 3.6 0.00012 47.5 25.6 201 467-685 149-355 (611)
127 1erj_A Transcriptional repress 95.1 4.7 0.00016 43.5 28.0 199 468-685 126-341 (393)
128 1rwi_B Serine/threonine-protei 95.0 3.4 0.00012 41.4 22.0 192 467-685 25-222 (270)
129 3jro_A Fusion protein of prote 94.9 2 7E-05 51.3 23.3 209 468-685 12-238 (753)
130 2xzm_R RACK1; ribosome, transl 94.7 5 0.00017 42.2 29.0 193 469-684 80-284 (343)
131 3sfz_A APAF-1, apoptotic pepti 94.7 11 0.00038 47.0 30.0 222 431-683 677-911 (1249)
132 3u4y_A Uncharacterized protein 94.6 4.7 0.00016 41.6 25.6 220 433-685 62-304 (331)
133 1pgu_A Actin interacting prote 94.6 2.8 9.5E-05 47.3 22.4 197 468-683 163-364 (615)
134 2pbi_B Guanine nucleotide-bind 94.6 5.7 0.0002 42.3 27.5 193 469-682 158-354 (354)
135 2aq5_A Coronin-1A; WD40 repeat 94.6 0.97 3.3E-05 48.8 17.7 190 484-688 53-257 (402)
136 3fm0_A Protein CIAO1; WDR39,SG 94.6 5.6 0.00019 42.1 31.9 230 433-685 38-283 (345)
137 1vyh_C Platelet-activating fac 94.6 6.5 0.00022 42.8 31.0 216 433-683 172-409 (410)
138 1erj_A Transcriptional repress 94.5 6.4 0.00022 42.4 28.4 223 433-683 145-387 (393)
139 2w18_A PALB2, fancn, partner a 94.3 4.7 0.00016 44.3 22.3 185 487-683 156-355 (356)
140 3hfq_A Uncharacterized protein 94.3 6 0.00021 41.3 26.6 225 435-684 20-270 (347)
141 2oaj_A Protein SNI1; WD40 repe 94.2 6.7 0.00023 48.1 26.1 199 468-685 20-242 (902)
142 3mmy_A MRNA export factor; mRN 94.2 5.9 0.0002 40.9 27.9 222 433-685 64-304 (368)
143 3sfz_A APAF-1, apoptotic pepti 94.2 16 0.00054 45.7 32.5 223 433-685 637-871 (1249)
144 2qc5_A Streptogramin B lactona 94.1 5.6 0.00019 40.1 32.3 214 433-684 41-259 (300)
145 3lrv_A PRE-mRNA-splicing facto 93.9 3.1 0.00011 43.8 19.7 183 481-685 51-244 (343)
146 2xyi_A Probable histone-bindin 93.9 2.8 9.5E-05 46.0 19.7 198 473-684 136-352 (430)
147 1nir_A Nitrite reductase; hemo 93.8 12 0.00041 43.0 29.3 230 433-693 159-410 (543)
148 3gre_A Serine/threonine-protei 93.7 4.8 0.00016 43.5 21.2 157 475-642 180-361 (437)
149 3dsm_A Uncharacterized protein 93.5 8.1 0.00028 40.8 22.1 190 433-652 105-314 (328)
150 3mmy_A MRNA export factor; mRN 93.4 8.1 0.00028 39.8 25.6 196 467-685 41-247 (368)
151 3gre_A Serine/threonine-protei 93.4 7 0.00024 42.2 21.8 203 468-685 114-359 (437)
152 3e5z_A Putative gluconolactona 93.2 8.3 0.00028 39.4 27.7 215 433-685 50-286 (296)
153 3hfq_A Uncharacterized protein 93.1 9.6 0.00033 39.7 26.5 229 433-683 63-315 (347)
154 3dwl_C Actin-related protein 2 93.0 1.8 6E-05 45.8 15.7 201 468-684 58-280 (377)
155 4gga_A P55CDC, cell division c 92.9 12 0.00042 40.5 30.2 224 432-685 124-353 (420)
156 3k26_A Polycomb protein EED; W 92.6 7.1 0.00024 40.3 19.6 162 469-641 22-193 (366)
157 2hes_X YDR267CP; beta-propelle 92.4 12 0.00041 39.1 24.6 204 470-684 19-229 (330)
158 3f3f_A Nucleoporin SEH1; struc 92.4 10 0.00035 38.3 27.4 190 433-639 33-248 (351)
159 2pm7_B Protein transport prote 92.3 11 0.00039 38.6 27.9 195 481-684 70-284 (297)
160 4aow_A Guanine nucleotide-bind 92.3 11 0.00038 38.5 25.1 204 468-685 41-246 (340)
161 3dwl_C Actin-related protein 2 92.2 3.4 0.00012 43.6 16.7 201 471-686 17-237 (377)
162 2hes_X YDR267CP; beta-propelle 91.9 14 0.00047 38.7 30.0 232 433-683 34-278 (330)
163 2qc5_A Streptogramin B lactona 91.8 12 0.0004 37.6 30.0 212 433-683 83-298 (300)
164 3bg1_A Protein SEC13 homolog; 91.5 15 0.0005 38.2 23.9 229 433-684 35-292 (316)
165 3dw8_B Serine/threonine-protei 91.4 17 0.00059 38.9 25.7 218 466-692 29-322 (447)
166 3frx_A Guanine nucleotide-bind 91.4 15 0.00052 38.1 25.3 202 471-685 23-227 (319)
167 3dw8_B Serine/threonine-protei 91.3 18 0.00061 38.8 27.0 163 514-685 180-373 (447)
168 3v7d_B Cell division control p 91.2 19 0.00065 39.0 32.1 216 433-685 183-421 (464)
169 4aow_A Guanine nucleotide-bind 91.2 15 0.0005 37.6 28.2 197 468-685 89-286 (340)
170 2j04_B YDR362CP, TAU91; beta p 91.2 6.7 0.00023 45.0 18.8 189 481-685 228-428 (524)
171 4gga_A P55CDC, cell division c 90.8 20 0.0007 38.6 25.7 221 432-684 168-394 (420)
172 1ri6_A Putative isomerase YBHE 90.5 17 0.00057 37.1 27.2 202 468-683 86-306 (343)
173 3u4y_A Uncharacterized protein 90.4 17 0.0006 37.2 25.4 217 432-685 19-252 (331)
174 3e5z_A Putative gluconolactona 90.1 18 0.00061 36.9 23.7 176 433-642 90-288 (296)
175 2oaj_A Protein SNI1; WD40 repe 90.1 41 0.0014 41.1 25.7 183 433-642 39-244 (902)
176 2pm7_B Protein transport prote 89.8 19 0.00066 36.8 22.9 205 469-685 13-238 (297)
177 3frx_A Guanine nucleotide-bind 88.6 25 0.00085 36.5 29.2 220 432-683 86-315 (319)
178 2dg1_A DRP35, lactonase; beta 87.9 27 0.00091 36.0 29.9 223 433-685 66-316 (333)
179 4ggc_A P55CDC, cell division c 86.8 28 0.00095 35.0 30.5 227 432-685 44-273 (318)
180 1ri6_A Putative isomerase YBHE 85.7 33 0.0011 34.8 24.9 204 468-684 40-261 (343)
181 1qks_A Cytochrome CD1 nitrite 85.5 59 0.002 37.6 33.5 233 433-694 177-430 (567)
182 2z2n_A Virginiamycin B lyase; 85.5 31 0.0011 34.4 32.0 213 433-683 36-253 (299)
183 4h5i_A Guanine nucleotide-exch 85.1 43 0.0015 35.6 25.8 181 433-640 157-343 (365)
184 4ggc_A P55CDC, cell division c 85.1 34 0.0011 34.4 24.9 220 432-683 88-313 (318)
185 4h5i_A Guanine nucleotide-exch 85.1 43 0.0015 35.6 27.5 201 469-686 137-344 (365)
186 3v9f_A Two-component system se 84.9 67 0.0023 38.0 22.6 192 479-684 374-567 (781)
187 3vu4_A KMHSV2; beta-propeller 84.5 44 0.0015 35.3 26.2 212 435-685 42-271 (355)
188 1pby_B Quinohemoprotein amine 83.8 34 0.0012 34.6 17.0 145 527-685 4-163 (337)
189 3g4e_A Regucalcin; six bladed 82.7 46 0.0016 34.1 27.0 209 433-674 35-261 (297)
190 3bg1_A Protein SEC13 homolog; 80.7 55 0.0019 33.7 20.7 210 468-685 16-247 (316)
191 3g4e_A Regucalcin; six bladed 80.4 55 0.0019 33.5 24.6 146 433-595 73-236 (297)
192 1jmx_B Amine dehydrogenase; ox 79.8 56 0.0019 33.2 21.1 107 481-591 14-137 (349)
193 3lrv_A PRE-mRNA-splicing facto 78.8 65 0.0022 33.4 26.2 116 468-592 128-248 (343)
194 2z3z_A Dipeptidyl aminopeptida 78.0 1E+02 0.0036 35.4 21.9 48 433-495 101-148 (706)
195 3dr2_A Exported gluconolactona 77.8 66 0.0023 32.9 25.2 187 470-682 90-303 (305)
196 3fvz_A Peptidyl-glycine alpha- 77.1 73 0.0025 33.1 21.9 99 489-595 70-181 (329)
197 3sjl_D Methylamine dehydrogena 75.4 1E+02 0.0035 33.9 23.9 51 631-685 311-363 (386)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 74.1 77 0.0026 31.9 28.0 229 433-685 46-299 (314)
199 3v9f_A Two-component system se 74.0 1.5E+02 0.005 35.1 24.6 190 479-685 269-478 (781)
200 1qks_A Cytochrome CD1 nitrite 73.9 1.3E+02 0.0046 34.6 23.4 189 481-684 169-372 (567)
201 3dr2_A Exported gluconolactona 72.4 90 0.0031 31.9 17.0 57 483-546 62-119 (305)
202 2j04_A TAU60, YPL007P, hypothe 71.5 79 0.0027 36.9 16.7 154 513-685 87-254 (588)
203 3vu4_A KMHSV2; beta-propeller 71.2 1.1E+02 0.0036 32.2 25.6 172 433-640 81-271 (355)
204 4a2l_A BT_4663, two-component 70.7 1.7E+02 0.0059 34.5 23.9 192 474-684 271-479 (795)
205 2j04_A TAU60, YPL007P, hypothe 69.7 1.7E+02 0.0059 34.1 21.6 191 468-682 88-294 (588)
206 2ghs_A AGR_C_1268P; regucalcin 67.7 1.2E+02 0.0041 31.5 27.3 132 433-589 71-213 (326)
207 4a2l_A BT_4663, two-component 65.7 2.1E+02 0.0074 33.7 24.3 224 434-683 283-524 (795)
208 2z2n_A Virginiamycin B lyase; 65.4 1.1E+02 0.0037 30.2 31.2 190 468-684 101-294 (299)
209 2fp8_A Strictosidine synthase; 64.1 1.4E+02 0.0046 30.8 18.6 68 473-543 26-110 (322)
210 2j04_B YDR362CP, TAU91; beta p 58.9 1.4E+02 0.0049 33.8 15.7 148 527-685 228-386 (524)
211 3scy_A Hypothetical bacterial 57.9 1.7E+02 0.006 30.1 26.1 161 514-683 157-335 (361)
212 2w18_A PALB2, fancn, partner a 57.4 2.2E+02 0.0075 31.0 18.7 154 469-637 185-354 (356)
213 2p9r_A Alpha-2-M, alpha-2-macr 56.7 82 0.0028 27.4 10.4 79 725-809 15-93 (102)
214 2dg1_A DRP35, lactonase; beta 55.6 1.8E+02 0.0061 29.5 25.1 189 473-684 52-262 (333)
215 1nir_A Nitrite reductase; hemo 53.7 2.9E+02 0.0098 31.3 29.8 226 433-685 200-458 (543)
216 1ofz_A Fucose-specific lectin; 51.4 2.5E+02 0.0086 29.9 19.6 198 475-684 19-242 (312)
217 3hrp_A Uncharacterized protein 51.0 2.7E+02 0.0092 30.2 24.1 197 465-683 130-352 (409)
218 2hqs_A Protein TOLB; TOLB, PAL 46.6 3E+02 0.01 29.5 28.9 192 468-684 181-386 (415)
219 2ojh_A Uncharacterized protein 46.3 2.1E+02 0.0072 27.6 26.9 217 432-684 21-257 (297)
220 2oit_A Nucleoporin 214KDA; NH2 46.2 3.2E+02 0.011 29.7 16.6 117 513-639 94-222 (434)
221 3scy_A Hypothetical bacterial 46.1 2.6E+02 0.009 28.7 24.7 223 435-684 31-290 (361)
222 2ecf_A Dipeptidyl peptidase IV 44.4 4.1E+02 0.014 30.4 22.6 28 468-497 154-181 (741)
223 3sjl_D Methylamine dehydrogena 42.6 3.7E+02 0.013 29.4 18.0 126 520-661 235-385 (386)
224 3c75_H MADH, methylamine dehyd 41.7 4E+02 0.014 29.5 26.5 51 631-685 350-402 (426)
225 2oiz_A Aromatic amine dehydrog 38.4 3.7E+02 0.013 28.2 25.5 48 631-685 286-334 (361)
226 2hqs_A Protein TOLB; TOLB, PAL 36.4 4.2E+02 0.015 28.3 24.8 137 433-591 203-347 (415)
227 2ghs_A AGR_C_1268P; regucalcin 32.6 4.2E+02 0.015 27.1 21.4 173 486-684 69-259 (326)
228 3hrp_A Uncharacterized protein 32.2 5E+02 0.017 27.9 24.9 114 384-544 130-250 (409)
229 2p4o_A Hypothetical protein; p 30.9 4.3E+02 0.015 26.7 23.7 103 473-589 39-148 (306)
230 2oit_A Nucleoporin 214KDA; NH2 28.9 3.1E+02 0.011 29.8 11.8 118 468-592 95-226 (434)
231 4gq1_A NUP37; propeller, trans 25.7 3.6E+02 0.012 28.5 11.3 112 572-685 104-218 (393)
232 3od9_A Putative exported prote 25.6 27 0.00093 32.6 1.8 68 316-404 14-81 (135)
233 2fp8_A Strictosidine synthase; 25.2 5.5E+02 0.019 26.0 18.5 68 519-595 192-275 (322)
234 2p9w_A MAL S 1 allergenic prot 24.4 6.8E+02 0.023 26.9 19.9 109 481-591 27-170 (334)
235 2oiz_A Aromatic amine dehydrog 22.8 6.6E+02 0.023 26.2 23.2 62 433-501 81-145 (361)
236 3nok_A Glutaminyl cyclase; bet 21.7 6.9E+02 0.024 25.9 12.1 148 427-597 69-219 (268)
237 4gq1_A NUP37; propeller, trans 20.9 7.3E+02 0.025 25.9 24.2 187 481-682 159-386 (393)
238 2p9w_A MAL S 1 allergenic prot 20.3 8.2E+02 0.028 26.2 13.5 102 433-542 100-214 (334)
239 2y72_A Collagenase, collagenas 20.3 1.2E+02 0.0042 25.5 4.9 32 769-813 51-82 (85)
240 2iwa_A Glutamine cyclotransfer 20.1 7.2E+02 0.025 25.5 24.5 186 473-683 28-235 (266)
No 1
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=99.82 E-value=1.8e-19 Score=202.98 Aligned_cols=262 Identities=15% Similarity=0.129 Sum_probs=158.7
Q ss_pred ceEEEeecCCCCccEEEEeeccCCcccccCCcccccc-ccccccccccceEEEEECCCCceEEEEeccCCCCccccccc-
Q 003012 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKEL-GGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAY- 463 (857)
Q Consensus 386 spavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~-~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~- 463 (857)
+++++||||||++||+++.. ....||.|. +.+.| ... ..|....... ...+
T Consensus 60 ~~~~~D~dgDG~~Dl~~~~~--~~~~~~~n~-g~g~f~~~~-------------------~~~~~~~~~~-----~~~~~ 112 (401)
T 2bwr_A 60 VRLLADTTGDNQSDVVGFGE--NGVWISTNN-GNNTFVDPP-------------------KMVLANFAYA-----AGGWR 112 (401)
T ss_dssp EEEEECSSSSSCCEEEEECS--SSEEEECBC-SSSCBCSSC-------------------EEEESCSBTT-----BSCCC
T ss_pred eeeeeccCCCCchhEEEeCC--CcEEEEEeC-CCccccCCc-------------------eeeecccccc-----CCCcc
Confidence 46899999999999998743 233556554 22222 110 0011111000 0010
Q ss_pred -cccccEEEecCCCCCccEEEEeeCCeEEEEeCCCc--eeeeeeeecc--------ceeceeEEEeecCCCCeEEEEEeC
Q 003012 464 -IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGK--IREKFPLEMA--------EIQGAVVAADINDDGKIELVTTDT 532 (857)
Q Consensus 464 -~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~--~~~~~~~~~g--------~i~ss~~vaD~DGDG~~DLvv~~~ 532 (857)
...+++++|+|+||++||+.. ..+.++++.++|. +......... .....+.++|+|+||++||++.+
T Consensus 113 ~~~~~~~~~D~dgDG~~Dl~~~-~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~- 190 (401)
T 2bwr_A 113 VEKHIRFMADLRKTGRADIVGF-GDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFG- 190 (401)
T ss_dssp TTTCEEEEECCSSSSSCEEEEE-CSSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEEC-
T ss_pred cCCceeEeecCCCCCCcCEEEE-CCCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEEC-
Confidence 013568999999999999964 3556788876554 3222111110 11245789999999999999875
Q ss_pred CCcEEEEecCCCeeEEEcccc---c---------cccCCEEEecCCCCcccEEEEecCCcEEEEECC-CCCeeccccccc
Q 003012 533 HGNVAAWTAEGKGIWEQHLKS---L---------VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK-DGSKVRPYPYRT 599 (857)
Q Consensus 533 ~G~l~~~~~~G~~~W~~~~~~---~---------~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~-~G~~~~~~~~~~ 599 (857)
.+.+++|.++|.+.|...... . ....+.++|+||||++||++... +.+++|.+. +|.+........
T Consensus 191 ~~~~~~~~n~g~g~f~~~~~~~~~~~~~~~g~~~~~~~~~~~D~dgDG~~Dlv~~~~-~~~~~~~n~g~g~f~~~~~~~~ 269 (401)
T 2bwr_A 191 ENQVYIARNSGNGTFQPAQAVVNNFCIGAGGWTISAHPRVVADLTGDRKADILGFGV-AGVYTSLNNGNGTFGAVNLVLK 269 (401)
T ss_dssp SSCEEEECBCSSSCBCCCEEEESCSBTTBSCCCTTTCCEEEECSSSSSCCEEEEECS-SSEEEECBCSSSCBCCCEEEES
T ss_pred CCcEEEEEeCCCCceecceeeccccccCcCCcccCCcceeeeEcCCCCCccEEEECC-CcEEEEEeCCCccccCceeccc
Confidence 477889988887766533110 0 13456899999999999998654 567777653 333322211111
Q ss_pred C-----C--ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEE--cCCCCceEEEEe------CCc---ceeeEEEEee
Q 003012 600 H-----G--RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLI--DGPTSCADVVDI------GET---SYSMVLADNV 661 (857)
Q Consensus 600 ~-----g--~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~--dg~~g~~~~i~~------g~~---~~s~~~a~Dl 661 (857)
. + ....++.++|+| +||.+||++... +.++++ ++.+.+.....+ +.. ....+.++||
T Consensus 270 ~~~~~~gw~~~~~~~~~~D~d----gDG~~Dlv~~~~-~~~~~~~n~g~g~f~~~~~~~~~~~~~~g~~~~~~~~~~~D~ 344 (401)
T 2bwr_A 270 DFGVNSGWRVEKHVRCVSSLT----NKKVGDIIGFGD-AGVYVALNNGNGTFGPVKRVIDNFGYNQGWRVDKHPRFVVDL 344 (401)
T ss_dssp CSSGGGTCCTTTCEEEEECCS----TTCSCEEEEECS-SSEEEECBCSSSCBCCCEEEESCSSGGGTCCTTTCCEEEECS
T ss_pred CcccCCcccccCccceeEeCC----CCCCccEEEEcC-CeEEEEecCCCccccCcceeccccccCCCcccccceeeeEcc
Confidence 0 0 023457899999 579999999754 444444 344444443221 110 1234788999
Q ss_pred cCCCCccEEEEecCCcEEEEeC
Q 003012 662 DGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 662 DGDG~~DLvv~t~~G~V~~~~~ 683 (857)
|+||++||++.+ .+.+++|.+
T Consensus 345 dgDG~~Dlv~~~-~~~~~~~~n 365 (401)
T 2bwr_A 345 TGDGCADIVGFG-ENSVWACMN 365 (401)
T ss_dssp SSSSSCEEEEEC-SSCEEEEEE
T ss_pred CCCCCccEEEEC-CCcEEEEEe
Confidence 999999999865 677777765
No 2
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=99.80 E-value=2.2e-17 Score=193.82 Aligned_cols=259 Identities=13% Similarity=0.191 Sum_probs=163.1
Q ss_pred cceEEEee--cCCCCccEEEEeeccC----------CcccccCCccccccccccccccccceEEEEECCCCceEEEEecc
Q 003012 385 STPVIADI--DNDGVSEMIIAVSYFF----------DHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLD 452 (857)
Q Consensus 385 sspavaDi--DGDG~~DIVv~~s~~~----------d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ 452 (857)
.+..++|| ||||++|||++..... ...||+|+. .+. |..+.-
T Consensus 35 ~sV~aaDL~~DGDG~lDVLv~g~~s~d~~~d~~~~~~V~WYeN~G-~gt-------------------------Fs~~vI 88 (900)
T 4a7k_A 35 YWVEAFPFRSDSSKCPNIIGYGLGTYDMKSDIQMLVNPYATTNNQ-SSS-------------------------WTPVPL 88 (900)
T ss_dssp CEEEEECSBTTCCSSCEEEEECCCCSSCCEEEEEEECTTSSTTCC-CCC-------------------------CEEEEE
T ss_pred ceEEEeccCcCCCCCccEEeeccccccccccccccceEEEEECCC-CCC-------------------------CcceEe
Confidence 46799999 9999999997643211 357898872 222 222211
Q ss_pred CCCCccccccccccccEEEecCCCCCccEEEEee-----------CCeEEEEeCCCce--eeee-eeeccceeceeEEEe
Q 003012 453 LSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-----------FGLFYVLDHHGKI--REKF-PLEMAEIQGAVVAAD 518 (857)
Q Consensus 453 ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-----------~G~Lyv~~~dG~~--~~~~-~~~~g~i~ss~~vaD 518 (857)
.. .....+..++||||||++||+++.. .|.|+|+.+.|.. .|.. .+......+.+.++|
T Consensus 89 -~~------~~~pvsV~aaDLDGDGdlDVVvas~fg~t~dd~n~~gG~V~W~ENpGd~t~~Wk~h~Is~~pgvHrv~agD 161 (900)
T 4a7k_A 89 -AK------LDFPVAMHYADITKNGFNDVIITDQYGSSMDDIWAYGGRVSWLENPGELRDNWTMRTIGHSPGMHRLKAGH 161 (900)
T ss_dssp -EE------ESSCCCEEEECTTCSSBCEEEEEECCEEETTEECTTCCEEEEECCCSSSCSSCCEEEEEECTTEEEEEEEC
T ss_pred -cc------CCCceeeEEEeeCCCCCccEEEecccCccccccccCCcEEEEEecCCCCCCCceEEEecCCCceEEEEEEE
Confidence 00 0001346789999999999999863 4679999977654 3432 222122345789999
Q ss_pred ecCCCCeEEEEEeC---------CCcEEEEec----CCCeeEEEcccc--ccccCCE---EEecCCC-CcccEEEEecCC
Q 003012 519 INDDGKIELVTTDT---------HGNVAAWTA----EGKGIWEQHLKS--LVTQGPS---IGDVDGD-GHSDVVVPTLSG 579 (857)
Q Consensus 519 ~DGDG~~DLvv~~~---------~G~l~~~~~----~G~~~W~~~~~~--~~~~~va---vgDlDGD-G~~DLvv~t~~G 579 (857)
+|+||++||+++.. .+.+++|.. .+...|+.+... ...+.+. ++|+||| |..||++++..|
T Consensus 162 LDGDGrlDLIvAsl~g~KeGws~p~kL~~fe~P~Dp~~~~eWk~~VIsd~~~~HGl~v~~aGDINGD~G~dDILVASkEG 241 (900)
T 4a7k_A 162 FTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQLWQRDVVGTRHLVHEVAIVPAAETDGEMRFDQIILAGRDG 241 (900)
T ss_dssp SSCSSSCEEEEEESCSSTTCCSSCEEEEEEECCSCTTSSCSCEEEEEEEESSCCEEEEECGGGGTTSCSSCEEEEEETTE
T ss_pred ECCCCCEEEEEEeccccCcCcCCCceEEEEECCCCcccccCceEEEecCCCcceeeEEeccccccCCCCCceEEEEcCCC
Confidence 99999999999862 235777753 335568765433 2234444 4599999 999999998776
Q ss_pred cEEEEECCCCCeecccccccC---------CccccceEEEeccCCCCCCCCeEEEEEec--CCeEEEEcCCCC-------
Q 003012 580 NIYVLSGKDGSKVRPYPYRTH---------GRVMNQVLLVDLTKRGEKSKGLTIVTTSF--DGYLYLIDGPTS------- 641 (857)
Q Consensus 580 ~I~~l~~~~G~~~~~~~~~~~---------g~~~s~~~v~DlDgDg~gDG~~DLvv~s~--dG~ly~~dg~~g------- 641 (857)
..+++. .+|. |....... ..-.+.+.++|+| +||..+|++... .+.+.++.+..+
T Consensus 242 V~wf~~-~dG~--Wk~~~Ig~G~as~~~~d~~GagDIavGDLd----GDG~deIaTIEPfHGd~VaVYt~~~ggp~g~~~ 314 (900)
T 4a7k_A 242 VDCLWY-DGAR--WQRHLVGTGLPEERGDPYWGAGSAAVGRVG----DDYAGYICSAEAFHGNTVSVYTKPAGSPTGIVR 314 (900)
T ss_dssp EEEEEE-CSSC--EEEEEEECCBCCCTTCCCCBCSEEEEEEET----TEEEEEEEEEESTTCSEEEEEECCTTCCSSSTT
T ss_pred cEEEEe-CCCC--cEEEEccCCCccccccCCCCccceEEEEcC----CCCceeEEEecCCcCCEEEEEECCCCCcccccc
Confidence 555444 3442 22211111 1133457899998 467777776532 345666655433
Q ss_pred --ceE-EEEe-C------CcceeeEEEEeecCCCCccEEEEecCCc--------EEEEeC
Q 003012 642 --CAD-VVDI-G------ETSYSMVLADNVDGGDDLDLIVTTMNGN--------VFCFST 683 (857)
Q Consensus 642 --~~~-~i~~-g------~~~~s~~~a~DlDGDG~~DLvv~t~~G~--------V~~~~~ 683 (857)
+.. .+.. | ......+.++||||||..||+++...+. |++|..
T Consensus 315 ~~WkrhVId~~g~~~e~~~~fgHaL~~gDldGDG~~DIVvG~R~~~~~D~~~~gL~~Y~~ 374 (900)
T 4a7k_A 315 AEWTRHVLDVFGPLNGKHTGSIHQVVCADIDGDGEDEFLVAMMGADPPDFQRTGVWCYKL 374 (900)
T ss_dssp SCCEEEEEEECCCCCTTSCCSEEEEEEECTTSSSBCEEEEEEECCSSCCGGGEEEEEEEE
T ss_pred ccceeeeecccCcccccccCCceeEEEEecCCCCcccEEEEecCCCCccCCcceEEEEEE
Confidence 222 2333 1 1122368899999999999999976554 676653
No 3
>2bwr_A Psathyrella velutina lectin; N-acetyl-glucosamine; HET: MES; 1.5A {Psathyrella velutina} PDB: 2bwm_A* 2c25_A* 2c4d_A*
Probab=99.78 E-value=9.2e-18 Score=189.10 Aligned_cols=264 Identities=17% Similarity=0.163 Sum_probs=161.6
Q ss_pred ccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEE-CCCCceEEEEeccCCCCcccccc
Q 003012 384 LSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFN-LDTKQVKWTTDLDLSTDNASFRA 462 (857)
Q Consensus 384 ~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d-~~tG~i~W~~~l~ls~~~~~~~~ 462 (857)
.+.+++.|+|+||++|||.... ....||+|. .|... ..... .......|..
T Consensus 5 ~~~~~~~d~d~DG~~Div~~~~--~~~~~~~n~----~f~~~---------~~~~~~~~~~~~gw~~------------- 56 (401)
T 2bwr_A 5 ISQALPVPTRIPGVADLVGFGN--GGVYIIRNS----LLIQV---------VKVINNFGYDAGGWRV------------- 56 (401)
T ss_dssp EESSCCSCCCSSCCCEEEEEET--TEEEEECSS----SSCCC---------EEEESCSBTTTBCCCT-------------
T ss_pred EecccccccCCCCcccEEEEcC--CcEEEEccc----cccCh---------hhhhcccccCCCcccc-------------
Confidence 4567889999999999986532 245688776 23211 00000 0000001110
Q ss_pred ccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceee---ee-eee-----ccce---eceeEEEeecCCCCeEEEEE
Q 003012 463 YIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIRE---KF-PLE-----MAEI---QGAVVAADINDDGKIELVTT 530 (857)
Q Consensus 463 ~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~---~~-~~~-----~g~i---~ss~~vaD~DGDG~~DLvv~ 530 (857)
...+++++|+|+||++||++... +.++++.++|...+ .. ... .+.+ ...++++|+|+||++||+..
T Consensus 57 -~~~~~~~~D~dgDG~~Dl~~~~~-~~~~~~~n~g~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dgDG~~Dl~~~ 134 (401)
T 2bwr_A 57 -EKHVRLLADTTGDNQSDVVGFGE-NGVWISTNNGNNTFVDPPKMVLANFAYAAGGWRVEKHIRFMADLRKTGRADIVGF 134 (401)
T ss_dssp -TTCEEEEECSSSSSCCEEEEECS-SSEEEECBCSSSCBCSSCEEEESCSBTTBSCCCTTTCEEEEECCSSSSSCEEEEE
T ss_pred -CcceeeeeccCCCCchhEEEeCC-CcEEEEEeCCCccccCCceeeeccccccCCCcccCCceeEeecCCCCCCcCEEEE
Confidence 01346899999999999999875 56778776554322 11 110 0111 24678999999999999965
Q ss_pred eCCCcEEEEecCCCeeEEEcccc-----------ccccCCEEEecCCCCcccEEEEecCCcEEEEECC-CCCeecccccc
Q 003012 531 DTHGNVAAWTAEGKGIWEQHLKS-----------LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK-DGSKVRPYPYR 598 (857)
Q Consensus 531 ~~~G~l~~~~~~G~~~W~~~~~~-----------~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~-~G~~~~~~~~~ 598 (857)
..+.+++|.++|.+.|...... .....+.++|+||||++||++.. .+.+++|.+. +|.+.......
T Consensus 135 -~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D~dgDG~~Dl~~~~-~~~~~~~~n~g~g~f~~~~~~~ 212 (401)
T 2bwr_A 135 -GDGGIYISRNNGGGQFAPAQLALNNFGYAQGWRLDRHLRFLADVTGDGLLDVVGFG-ENQVYIARNSGNGTFQPAQAVV 212 (401)
T ss_dssp -CSSSEEEECBCSTTCBCCCEEEESCSSGGGTCCTTTCEEEEECSSSSSCCEEEEEC-SSCEEEECBCSSSCBCCCEEEE
T ss_pred -CCCCEEEEEeCCCCccccccccccCccccCccccCCcceEEEEcCCCCCccEEEEC-CCcEEEEEeCCCCceecceeec
Confidence 4667888888877666532210 12345688999999999999865 4678887753 33332221110
Q ss_pred cC---C-----ccccceEEEeccCCCCCCCCeEEEEEecCCe-EEEEcCCCCceEEEEeC--Cc-------ceeeEEEEe
Q 003012 599 TH---G-----RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGY-LYLIDGPTSCADVVDIG--ET-------SYSMVLADN 660 (857)
Q Consensus 599 ~~---g-----~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~-ly~~dg~~g~~~~i~~g--~~-------~~s~~~a~D 660 (857)
.. + ....++.++|+| +||.+||++....+. +|..++.+.+.....+. .. ....+.++|
T Consensus 213 ~~~~~~~~g~~~~~~~~~~~D~d----gDG~~Dlv~~~~~~~~~~~n~g~g~f~~~~~~~~~~~~~~gw~~~~~~~~~~D 288 (401)
T 2bwr_A 213 NNFCIGAGGWTISAHPRVVADLT----GDRKADILGFGVAGVYTSLNNGNGTFGAVNLVLKDFGVNSGWRVEKHVRCVSS 288 (401)
T ss_dssp SCSBTTBSCCCTTTCCEEEECSS----SSSCCEEEEECSSSEEEECBCSSSCBCCCEEEESCSSGGGTCCTTTCEEEEEC
T ss_pred cccccCcCCcccCCcceeeeEcC----CCCCccEEEECCCcEEEEEeCCCccccCceecccCcccCCcccccCccceeEe
Confidence 00 0 013457899999 579999998765442 33334444454332221 10 112477999
Q ss_pred ecCCCCccEEEEecCCcEEEEeCC
Q 003012 661 VDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 661 lDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
||+||++||++.. .+.+++|.+.
T Consensus 289 ~dgDG~~Dlv~~~-~~~~~~~~n~ 311 (401)
T 2bwr_A 289 LTNKKVGDIIGFG-DAGVYVALNN 311 (401)
T ss_dssp CSTTCSCEEEEEC-SSSEEEECBC
T ss_pred CCCCCCccEEEEc-CCeEEEEecC
Confidence 9999999999964 5678888764
No 4
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=99.70 E-value=1.7e-14 Score=165.30 Aligned_cols=247 Identities=18% Similarity=0.227 Sum_probs=160.2
Q ss_pred ceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCc--eEEEEeccCCCCccccccc
Q 003012 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQ--VKWTTDLDLSTDNASFRAY 463 (857)
Q Consensus 386 spavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~--i~W~~~l~ls~~~~~~~~~ 463 (857)
.+.+++|||+ .+.+|++..+|. ...+++|+.++++ .+|......+ ....+.+.
T Consensus 269 ~~~vayLDG~-~Ps~v~~rGyYt-----------------------r~~v~A~d~~~~~L~~~W~~d~~~~-~~~~~~gq 323 (591)
T 2zux_A 269 LAGIAYLDGQ-RPSLIMTRGYYA-----------------------KTMLVAYNFRDGKLSKLWTLDSSKS-GNEAFAGQ 323 (591)
T ss_dssp EEEEECTTSS-SCEEEEEECCSS-----------------------SCEEEEEEEETTEEEEEEEEETTST-TCGGGSSC
T ss_pred eeeEEECCCC-CceEEEeccccc-----------------------eeEEEEEECCCCceEEEEEecCCCC-Cccccccc
Confidence 4688999999 999999866432 1458899988776 4898765321 11233344
Q ss_pred cccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCC-CeEEEEEeCCC----cEEE
Q 003012 464 IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDG-KIELVTTDTHG----NVAA 538 (857)
Q Consensus 464 ~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG-~~DLvv~~~~G----~l~~ 538 (857)
...++.++|+||||+.||++++ .+++.+|+.+|..++.. ...+.++|||.|. -++++.+...+ -..+
T Consensus 324 g~h~~~vaDVDgDG~dEIv~Gs-----~~iD~dG~~L~st~~gH---GDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~ 395 (591)
T 2zux_A 324 GNHNLSIADVDGDGKDEIIFGS-----MAVDHDGKGMYSTGLGH---GDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSF 395 (591)
T ss_dssp CCSCCEEECCSSSSSCEEEETT-----EEECTTSCEEEECSCCC---CSCEEEECCCTTSSSCEEEEECCCTTSSCSEEE
T ss_pred CCCCCeeEeCCCCCCceEEEee-----eEECCCCCEeeeCCCCC---CCeeEEeecCCCCCCcEEEEEecCCCCCCccEE
Confidence 5578999999999999999876 37899999999877642 3457899999885 47888886542 2333
Q ss_pred Ee-cCCCeeEEEccccccccCCEEEecCCCCc-ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCC
Q 003012 539 WT-AEGKGIWEQHLKSLVTQGPSIGDVDGDGH-SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRG 616 (857)
Q Consensus 539 ~~-~~G~~~W~~~~~~~~~~~vavgDlDGDG~-~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg 616 (857)
++ .+|+.+|........ ....++|||.+.. .++.. .+. ++. .+|+.++.. ... +.-....+|+
T Consensus 396 ~dA~tG~vlw~~~~~~d~-Gr~~~~Didp~~pG~E~w~---~~~--l~~-~~G~~i~~~---~p~---~~N~~i~WdG-- 460 (591)
T 2zux_A 396 RDAATGKILWGVYAGKDV-GRGMAADIDPRYPGQEVWA---NGS--LYS-AKGVKIGSG---VPS---STNFGIWWDG-- 460 (591)
T ss_dssp EETTTCCEEEEECCSSCC-CCEEEECCCTTSSSCEEEE---TTE--EEC-TTSCBCSSC---CCS---CCSEEECCSS--
T ss_pred EECCCCcEEEEcCCCCCC-CceeEEecCCCCCceEEEe---cCc--eEC-CCCCEecCC---CCC---CcceeEEECC--
Confidence 45 499999987643222 3457899998744 34443 332 333 567776543 011 1122457874
Q ss_pred CCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCc------ce-eeEEEEeecCCCCccEEEEecCC-cEEEEeCCC
Q 003012 617 EKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGET------SY-SMVLADNVDGGDDLDLIVTTMNG-NVFCFSTPA 685 (857)
Q Consensus 617 ~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~------~~-s~~~a~DlDGDG~~DLvv~t~~G-~V~~~~~~~ 685 (857)
|...+++-. +.+..++..++....+-.... .- .....+||-||.+-+||+.+.+. .+++|.+.-
T Consensus 461 --Dl~relld~---~~i~k~~~~~~~~~~l~~~~g~~snngtk~~P~l~aDi~GDwREEvI~~t~D~~~LrIYtt~~ 532 (591)
T 2zux_A 461 --DLLREQLDS---NRIDKWDYQNGVSKNMLTASGAAANNGTKATPTLQADLLGDWREEVVWRTEDSSALRIYTTTI 532 (591)
T ss_dssp --SSSCEEEET---TEEEEEETTTTEEEEEEECTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEEEECCCC
T ss_pred --CCcHhhhCC---ceEEecccCCCceeEEEeecccccCCCCCCCEeeEEeccccCeeEEEEEeCCCCeEEEEeCCC
Confidence 566677653 245555544443222211111 11 12467799999999999987655 688888743
No 5
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=99.70 E-value=3.5e-15 Score=170.99 Aligned_cols=249 Identities=21% Similarity=0.274 Sum_probs=169.2
Q ss_pred cceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCcccccccc
Q 003012 385 STPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI 464 (857)
Q Consensus 385 sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~ 464 (857)
..++++||||||..|||+..... |+ ......+.+ -...|.+++++ |+.+|+..+.... .....
T Consensus 115 nd~sVgDLDGDG~~EiVv~~dp~-------n~-~d~s~~g~t----g~~~l~aY~ld-G~~LW~idlg~ni----~aGa~ 177 (591)
T 2zux_A 115 NDASVGDVDGDGQYELILKWDPS-------NS-KDNSQDGYT----GDVLIDAYKLD-GTKLWRINLGKNI----RAGAH 177 (591)
T ss_dssp EEEEEECSSSSSSCEEEEEEEET-------TC-CCTTCCSCC----CCCEEEEECTT-SCEEEEEECCTTS----CCSTT
T ss_pred CCCeEEecCCCCCEEEEEEECCc-------cc-ccccccCcC----CCcEEEEEECC-CCEEEEEcCCCCc----ccccc
Confidence 35799999999999999985310 11 000001111 12458899997 8999988764321 11224
Q ss_pred ccccEEEecCCCCCccEEEEeeCCe----------------------------EEEEeC-CCceeeeeeeec--ccee--
Q 003012 465 YSSPTVVDLDGDGNLDILVGTSFGL----------------------------FYVLDH-HGKIREKFPLEM--AEIQ-- 511 (857)
Q Consensus 465 ~sspavaDlDGDG~~DIvVg~~~G~----------------------------Lyv~~~-dG~~~~~~~~~~--g~i~-- 511 (857)
+.++.++||||||+.||++.+.+|. |+++++ +|+.++.++... +...
T Consensus 178 yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~W 257 (591)
T 2zux_A 178 YTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSDW 257 (591)
T ss_dssp SCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGGG
T ss_pred cCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCccccc
Confidence 5789999999999999999976553 889996 999887665531 2111
Q ss_pred ----------ceeEEEeecCCCCeEEEEEe---CCCcEEEEecCCC---eeEEEcccc--------ccccCCEEEecCCC
Q 003012 512 ----------GAVVAADINDDGKIELVTTD---THGNVAAWTAEGK---GIWEQHLKS--------LVTQGPSIGDVDGD 567 (857)
Q Consensus 512 ----------ss~~vaD~DGDG~~DLvv~~---~~G~l~~~~~~G~---~~W~~~~~~--------~~~~~vavgDlDGD 567 (857)
-.+.+++|||+ ++.++++. ....+.+|+-.+. .+|...... ...+.++++|+|||
T Consensus 258 GD~ygnR~drf~~~vayLDG~-~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 258 GDSYGNRVDRFLAGIAYLDGQ-RPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp TCSSSSGGGCEEEEEECTTSS-SCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred ccccccccccceeeEEECCCC-CceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 14788999999 99999986 2346889986443 579876542 23478999999999
Q ss_pred CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecC-----CeEEEEcCCCCc
Q 003012 568 GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFD-----GYLYLIDGPTSC 642 (857)
Q Consensus 568 G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~d-----G~ly~~dg~~g~ 642 (857)
|+.||++++. +++ .+|+.+|..+.. + ...+.++|||.+ ...++++...++ |.. +.+..+|.
T Consensus 337 G~dEIv~Gs~-----~iD-~dG~~L~st~~g-H---GDa~hv~dldP~---r~GlEv~~~~E~~~~~~G~~-~~dA~tG~ 402 (591)
T 2zux_A 337 GKDEIIFGSM-----AVD-HDGKGMYSTGLG-H---GDALHTGDLDPG---RPGLEVFQVHEDKNAKYGLS-FRDAATGK 402 (591)
T ss_dssp SSCEEEETTE-----EEC-TTSCEEEECSCC-C---CSCEEEECCCTT---SSSCEEEEECCCTTSSCSEE-EEETTTCC
T ss_pred CCceEEEeee-----EEC-CCCCEeeeCCCC-C---CCeeEEeecCCC---CCCcEEEEEecCCCCCCccE-EEECCCCc
Confidence 9999998643 333 579988876542 2 356789999864 336888887765 333 35777777
Q ss_pred eEEEEeCCcceeeEEEEeecCCC
Q 003012 643 ADVVDIGETSYSMVLADNVDGGD 665 (857)
Q Consensus 643 ~~~i~~g~~~~s~~~a~DlDGDG 665 (857)
..|...+..-.....++|||.+.
T Consensus 403 vlw~~~~~~d~Gr~~~~Didp~~ 425 (591)
T 2zux_A 403 ILWGVYAGKDVGRGMAADIDPRY 425 (591)
T ss_dssp EEEEECCSSCCCCEEEECCCTTS
T ss_pred EEEEcCCCCCCCceeEEecCCCC
Confidence 77643332223345677888763
No 6
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=99.70 E-value=7.7e-16 Score=180.95 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=157.9
Q ss_pred cceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEE-ECCCCceEEEEeccCCCCccccccc
Q 003012 385 STPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVF-NLDTKQVKWTTDLDLSTDNASFRAY 463 (857)
Q Consensus 385 sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~-d~~tG~i~W~~~l~ls~~~~~~~~~ 463 (857)
.+..++||||||++|||++..+..... -.|+ ..|.|+.+ +...++..|..+.- .. ..
T Consensus 95 vsV~aaDLDGDGdlDVVvas~fg~t~d-d~n~--------------~gG~V~W~ENpGd~t~~Wk~h~I-s~------~p 152 (900)
T 4a7k_A 95 VAMHYADITKNGFNDVIITDQYGSSMD-DIWA--------------YGGRVSWLENPGELRDNWTMRTI-GH------SP 152 (900)
T ss_dssp CCEEEECTTCSSBCEEEEEECCEEETT-EECT--------------TCCEEEEECCCSSSCSSCCEEEE-EE------CT
T ss_pred eeeEEEeeCCCCCccEEEecccCcccc-cccc--------------CCcEEEEEecCCCCCCCceEEEe-cC------CC
Confidence 356899999999999998864311000 0000 01223333 22223344655431 10 12
Q ss_pred cccccEEEecCCCCCccEEEEee---------CCeEEEEeCC----Cceeeeeeeec-cceeceeE---EEeecCC-CCe
Q 003012 464 IYSSPTVVDLDGDGNLDILVGTS---------FGLFYVLDHH----GKIREKFPLEM-AEIQGAVV---AADINDD-GKI 525 (857)
Q Consensus 464 ~~sspavaDlDGDG~~DIvVg~~---------~G~Lyv~~~d----G~~~~~~~~~~-g~i~ss~~---vaD~DGD-G~~ 525 (857)
....+.++|+||||++|||++.. .+.|+++... +...|...... +...+.+. ++|+||| |+.
T Consensus 153 gvHrv~agDLDGDGrlDLIvAsl~g~KeGws~p~kL~~fe~P~Dp~~~~eWk~~VIsd~~~~HGl~v~~aGDINGD~G~d 232 (900)
T 4a7k_A 153 GMHRLKAGHFTRTDRVQVVAVPIVVASSDLTTPADVIIFTAPDDPRSEQLWQRDVVGTRHLVHEVAIVPAAETDGEMRFD 232 (900)
T ss_dssp TEEEEEEECSSCSSSCEEEEEESCSSTTCCSSCEEEEEEECCSCTTSSCSCEEEEEEEESSCCEEEEECGGGGTTSCSSC
T ss_pred ceEEEEEEEECCCCCEEEEEEeccccCcCcCCCceEEEEECCCCcccccCceEEEecCCCcceeeEEeccccccCCCCCc
Confidence 23457899999999999999862 2358888732 23335433221 22233444 4599999 999
Q ss_pred EEEEEeCCCcEEEEecCCCeeEEEccc--c---------ccccCCEEEecCCCCcccEEEEec--CCcEEEEECCCCCe-
Q 003012 526 ELVTTDTHGNVAAWTAEGKGIWEQHLK--S---------LVTQGPSIGDVDGDGHSDVVVPTL--SGNIYVLSGKDGSK- 591 (857)
Q Consensus 526 DLvv~~~~G~l~~~~~~G~~~W~~~~~--~---------~~~~~vavgDlDGDG~~DLvv~t~--~G~I~~l~~~~G~~- 591 (857)
||++++..|...++..+| .|..+.. + .....+.++|+||||..+|++... .+.+.+|.+..+..
T Consensus 233 DILVASkEGV~wf~~~dG--~Wk~~~Ig~G~as~~~~d~~GagDIavGDLdGDG~deIaTIEPfHGd~VaVYt~~~ggp~ 310 (900)
T 4a7k_A 233 QIILAGRDGVDCLWYDGA--RWQRHLVGTGLPEERGDPYWGAGSAAVGRVGDDYAGYICSAEAFHGNTVSVYTKPAGSPT 310 (900)
T ss_dssp EEEEEETTEEEEEEECSS--CEEEEEEECCBCCCTTCCCCBCSEEEEEEETTEEEEEEEEEESTTCSEEEEEECCTTCCS
T ss_pred eEEEEcCCCcEEEEeCCC--CcEEEEccCCCccccccCCCCccceEEEEcCCCCceeEEEecCCcCCEEEEEECCCCCcc
Confidence 999998777555554443 5876532 1 123457899999999998887643 45788888765541
Q ss_pred -e----ccc-cccc-------CCccccceEEEeccCCCCCCCCeEEEEEecCCe--------EEEE---cCCCC-ceEE-
Q 003012 592 -V----RPY-PYRT-------HGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGY--------LYLI---DGPTS-CADV- 645 (857)
Q Consensus 592 -~----~~~-~~~~-------~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~--------ly~~---dg~~g-~~~~- 645 (857)
. |.- .... .-.....+.++|+| |||..||+++...+. ||++ +..++ +...
T Consensus 311 g~~~~~WkrhVId~~g~~~e~~~~fgHaL~~gDld----GDG~~DIVvG~R~~~~~D~~~~gL~~Y~~~D~g~GsF~~~v 386 (900)
T 4a7k_A 311 GIVRAEWTRHVLDVFGPLNGKHTGSIHQVVCADID----GDGEDEFLVAMMGADPPDFQRTGVWCYKLVDRTNMKFSKTK 386 (900)
T ss_dssp SSTTSCCEEEEEEECCCCCTTSCCSEEEEEEECTT----SSSBCEEEEEEECCSSCCGGGEEEEEEEEEETTTTEEEEEE
T ss_pred ccccccceeeeecccCcccccccCCceeEEEEecC----CCCcccEEEEecCCCCccCCcceEEEEEEecCCCCcEEEEE
Confidence 1 211 1111 12234568899999 579999999976533 5554 33333 3333
Q ss_pred EEeCCcceeeEEEEeecCCC-CccEEEEecC
Q 003012 646 VDIGETSYSMVLADNVDGGD-DLDLIVTTMN 675 (857)
Q Consensus 646 i~~g~~~~s~~~a~DlDGDG-~~DLvv~t~~ 675 (857)
++.+ ....+.++|||||| ++||++++..
T Consensus 387 ID~g--~~~~v~aaDLDGDG~dlDIV~asy~ 415 (900)
T 4a7k_A 387 VSSV--SAGRIATANFHSQGSEVDIATISYS 415 (900)
T ss_dssp EECS--CCSEEEEECCSSSSSCCEEEEECCB
T ss_pred EcCC--CcceEEEeccCCCCCcccEEEeecc
Confidence 3333 33458899999999 9999999654
No 7
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=99.65 E-value=2.4e-14 Score=164.63 Aligned_cols=251 Identities=23% Similarity=0.281 Sum_probs=169.3
Q ss_pred cceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCcccccccc
Q 003012 385 STPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYI 464 (857)
Q Consensus 385 sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~ 464 (857)
..++++||||||..|||+.... .|+... ...+.. -...|.+++++ |+.+|+..+.... .....
T Consensus 119 nd~sVgDLDGDG~~EIVv~~d~-------~n~~d~-s~~g~t----g~~~l~aY~ld-G~~LW~idlg~Ni----~aGah 181 (620)
T 2zuy_A 119 NDASVGDIDGDGEYEMILKWDP-------SNSKDN-AHDGYT----GEVLIDAYKLD-GTFLWRINLGRNI----RAGAH 181 (620)
T ss_dssp EEEEEECSSSSSSCEEEEEEEE-------TTCCCT-TSCCCC----CCCEEEEECTT-SCEEEEEECCTTS----CCSTT
T ss_pred CCCeEEecCCCCCeEEEEEECC-------Cccccc-cccccC----CCcEEEEEECC-CCEEEEEcCCCCc----ccccc
Confidence 3579999999999999998642 111111 011111 12358899997 8999998764321 11224
Q ss_pred ccccEEEecCCCCCccEEEEeeCC----------------------------eEEEEeC-CCceeeeeeeec--cce---
Q 003012 465 YSSPTVVDLDGDGNLDILVGTSFG----------------------------LFYVLDH-HGKIREKFPLEM--AEI--- 510 (857)
Q Consensus 465 ~sspavaDlDGDG~~DIvVg~~~G----------------------------~Lyv~~~-dG~~~~~~~~~~--g~i--- 510 (857)
+.++.++||||||+.||++.+.+| .|+++++ +|+.++..+... +..
T Consensus 182 yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~vigd~~~dyr~~~g~il~G~eyL~vfdG~TG~~l~t~~~~p~rg~~~~W 261 (620)
T 2zuy_A 182 YTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLEDW 261 (620)
T ss_dssp SCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSCTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCSGGGG
T ss_pred cCceeEEEcCCCCcceEEEEccCCcccCcceeecccccccccccceEecCCeEEEEEcCCCcceeeecccCCCcCccccc
Confidence 578999999999999999987654 2688997 899887655421 111
Q ss_pred -------ec--eeEEEeecCCCCeEEEEEe---CCCcEEEEecCCC---eeEEEcccc--------ccccCCEEEecCCC
Q 003012 511 -------QG--AVVAADINDDGKIELVTTD---THGNVAAWTAEGK---GIWEQHLKS--------LVTQGPSIGDVDGD 567 (857)
Q Consensus 511 -------~s--s~~vaD~DGDG~~DLvv~~---~~G~l~~~~~~G~---~~W~~~~~~--------~~~~~vavgDlDGD 567 (857)
.. .+.+++|||+ ++.++++. ....+.+|+-.+. ..|...... ...+.++++|+|||
T Consensus 262 GD~yGnR~drf~~~vayLDG~-~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGD 340 (620)
T 2zuy_A 262 GDGYGNRMDRFLAGTAYLDGE-RPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGD 340 (620)
T ss_dssp TSSSSTTTTCEEEEEECTTCC--CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSS
T ss_pred cccccccccccceeEEecCCC-CceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCC
Confidence 11 4789999999 89999885 2345788876443 568876532 23478999999999
Q ss_pred CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCC----eEEEEcCCCCce
Q 003012 568 GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDG----YLYLIDGPTSCA 643 (857)
Q Consensus 568 G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG----~ly~~dg~~g~~ 643 (857)
|+.||++++. +++ .+|+.+|..... -...+.++|||.+ ...++++...+++ -..+.+..+|..
T Consensus 341 G~dEIv~Gs~-----~iD-~dG~~L~st~~g----HGDa~hv~d~dP~---rpGlev~~~~E~~~~~~G~~~~DA~tG~v 407 (620)
T 2zuy_A 341 GKDEIIYGAM-----AVD-HDGTGLYSTGLG----HGDAMHVGDLDPS---RKGLEVFQVHEDATKPYGLSLRDAGTGEI 407 (620)
T ss_dssp SSCEEEETTE-----EEC-TTSSEEEECSCC----CCSCEEEECSCTT---SSSCEEEEECCCTTSSCSEEEEETTTCCE
T ss_pred CceeEEEeee-----EEC-CCCCEEeecCCC----CCceeEEEecCCC---CCCCEEEEEecCCCCCCceEEEECCCCcE
Confidence 9999998752 333 579988876542 2345789999974 3567777776641 234568888888
Q ss_pred EEEEeCCcceeeEEEEeecCCCC
Q 003012 644 DVVDIGETSYSMVLADNVDGGDD 666 (857)
Q Consensus 644 ~~i~~g~~~~s~~~a~DlDGDG~ 666 (857)
.|......-.....++|||.+-.
T Consensus 408 lw~~~~~~D~Gr~~~~Didp~~p 430 (620)
T 2zuy_A 408 LWGVHAGTDVGRGMAAHIDPSYK 430 (620)
T ss_dssp EEEECCSSCCCEEEEECCCTTSS
T ss_pred EEEecCcccCCceEEEecCCCCC
Confidence 87544333334567889987654
No 8
>2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis}
Probab=99.64 E-value=3.9e-13 Score=154.63 Aligned_cols=255 Identities=17% Similarity=0.236 Sum_probs=157.9
Q ss_pred ceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCc--eEEEEeccCCCCccccccc
Q 003012 386 TPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQ--VKWTTDLDLSTDNASFRAY 463 (857)
Q Consensus 386 spavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~--i~W~~~l~ls~~~~~~~~~ 463 (857)
.+.+++|||+ .+++|++..+|. ...|++|+.++++ ..|......+ ....+...
T Consensus 273 ~~~vayLDG~-~Ps~v~~rG~Yt-----------------------r~~v~A~d~~~g~L~~~W~~ds~~~-~~~~~~gq 327 (620)
T 2zuy_A 273 LAGTAYLDGE-RPSLVMARGYYT-----------------------RTVLVAYDFRNGRLKKRWVFDSNQP-GHEAYAGQ 327 (620)
T ss_dssp EEEEECTTCC--CEEEEEECSSS-----------------------SCEEEEEEEETTEEEEEEEEETTST-TCGGGTTC
T ss_pred ceeEEecCCC-CceEEEecCccc-----------------------ceeEEEEEccCCceeeeeEecCCCC-cccccccc
Confidence 4689999999 999999866431 1458888887774 5788765321 11223344
Q ss_pred cccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCC-CeEEEEEeCCC----cEEE
Q 003012 464 IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDG-KIELVTTDTHG----NVAA 538 (857)
Q Consensus 464 ~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG-~~DLvv~~~~G----~l~~ 538 (857)
....++++|+||||+.||++++ .+++.+|+.+|..++.. ...+.++|||.|. -++++.+..++ -..+
T Consensus 328 g~H~~svaDVDGDG~dEIv~Gs-----~~iD~dG~~L~st~~gH---GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~ 399 (620)
T 2zuy_A 328 GNHSLSVADVDGDGKDEIIYGA-----MAVDHDGTGLYSTGLGH---GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSL 399 (620)
T ss_dssp CCSSCEEECCSSSSSCEEEETT-----EEECTTSSEEEECSCCC---CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEE
T ss_pred cCcCceEEecCCCCceeEEEee-----eEECCCCCEEeecCCCC---CceeEEEecCCCCCCCEEEEEecCCCCCCceEE
Confidence 5578999999999999999876 47889999999876532 3357899999883 35666665431 3445
Q ss_pred Eec-CCCeeEEEccccccccCCEEEecCCCCc-ccEEEEec---CC-cEEEEECCCCCeecccccccCCccccceEEEec
Q 003012 539 WTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGH-SDVVVPTL---SG-NIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDL 612 (857)
Q Consensus 539 ~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~-~DLvv~t~---~G-~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~Dl 612 (857)
++. +|+.+|......- .....++|||.+-. .++..... +. .-.++. .+|+.+... ..+ +.-...-+
T Consensus 400 ~DA~tG~vlw~~~~~~D-~Gr~~~~Didp~~pG~E~w~~~~~~~~~~~~~l~~-~~G~~i~~~---~p~---~~N~~i~W 471 (620)
T 2zuy_A 400 RDAGTGEILWGVHAGTD-VGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLFT-SKGEKISDK---APS---SANFAIWW 471 (620)
T ss_dssp EETTTCCEEEEECCSSC-CCEEEEECCCTTSSSCEEEEECCTTSCCCEEEEEE-TTCCEEESS---CCS---CCSEEECC
T ss_pred EECCCCcEEEEecCccc-CCceEEEecCCCCCceEEEEecccccccCCCceEC-CCCCCccCC---CCC---CcceEEEE
Confidence 565 9999999765322 23457899988754 34444321 11 112333 467665421 000 11223456
Q ss_pred cCCCCCCCCeEEEEEecC-----CeEEEEcCCCCceEEEEeCCc------c-eeeEEEEeecCCCCccEEEEecCC-cEE
Q 003012 613 TKRGEKSKGLTIVTTSFD-----GYLYLIDGPTSCADVVDIGET------S-YSMVLADNVDGGDDLDLIVTTMNG-NVF 679 (857)
Q Consensus 613 DgDg~gDG~~DLvv~s~d-----G~ly~~dg~~g~~~~i~~g~~------~-~s~~~a~DlDGDG~~DLvv~t~~G-~V~ 679 (857)
| ||-..+++-...+ +.+..++..++....+-.... . ......+||-||-+-+||+.+.+. .+.
T Consensus 472 d----GDl~re~ld~~~~~~~~~~~i~k~~~~~~~~~~l~t~~g~~snngTk~~P~l~aDi~GDWREEvi~~t~D~~~Lr 547 (620)
T 2zuy_A 472 D----GDLVRELLDHDWDGTIGRPKIEKWDAENGCLKTIFQPAGVLSNNGTKGNPVLQANLFGDWREEVIWRTEDSSALR 547 (620)
T ss_dssp S----SSSSCEEEEEEECSSCEEEEEEEEETTTTEEEEEECCTTEECBSGGGCBCSEEECCSSSSSCEEEEEETTSSEEE
T ss_pred C----CCccHhhhCCccccccCCceEEeccCCCCceeEEEEeecccccCCCcCCcceeecccccCeeeEEEEcCCCCeEE
Confidence 5 3556677655333 345555555443333211111 1 122467899999999999998655 588
Q ss_pred EEeCCC
Q 003012 680 CFSTPA 685 (857)
Q Consensus 680 ~~~~~~ 685 (857)
+|.+.-
T Consensus 548 IYtt~~ 553 (620)
T 2zuy_A 548 IYTTTH 553 (620)
T ss_dssp EECCCC
T ss_pred EEeCCC
Confidence 887743
No 9
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=99.51 E-value=1.1e-13 Score=171.38 Aligned_cols=183 Identities=24% Similarity=0.405 Sum_probs=115.7
Q ss_pred cccccccEEEecCCCCCccEEEEe-----eCCeEEEEeCCCceeeeeeee---ccc-eeceeEEEeecCCCCeEEEEEe-
Q 003012 462 AYIYSSPTVVDLDGDGNLDILVGT-----SFGLFYVLDHHGKIREKFPLE---MAE-IQGAVVAADINDDGKIELVTTD- 531 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~DIvVg~-----~~G~Lyv~~~dG~~~~~~~~~---~g~-i~ss~~vaD~DGDG~~DLvv~~- 531 (857)
.+...+.+++|+||||..|++++. ..|.+|++.+.+... ...+. .+. ....++++|+|+||..||+++.
T Consensus 220 sy~G~sVa~gD~ngDG~~DlvvGaP~~~~~~G~V~i~~~~~~~~-~~~~~g~~~gs~fG~sva~~D~ngDG~~DLvVgaP 298 (967)
T 3ije_A 220 SYLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYDGKNMSS-LYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAP 298 (967)
T ss_dssp CCBTSEEEEECCSSSSSCEEEEEETTHHHHTCEEEEECSSSSCE-EEEEECSSTTSCTTSEEEEECTTSSSCCEEEEEET
T ss_pred CccceEEEEEEECCCCCeEEEEEecccCCCCcEEEEEeCCCcee-eeEecccccCCceeEEEEEEecCCCCCceEEEEcc
Confidence 344456889999999999999994 357899998655211 11111 111 2356889999999999999984
Q ss_pred ------------CCCcEEEEecCCCeeEEEc-cc-----cccccCCE-EEecCCCCcccEEEEec------CCcEEEEEC
Q 003012 532 ------------THGNVAAWTAEGKGIWEQH-LK-----SLVTQGPS-IGDVDGDGHSDVVVPTL------SGNIYVLSG 586 (857)
Q Consensus 532 ------------~~G~l~~~~~~G~~~W~~~-~~-----~~~~~~va-vgDlDGDG~~DLvv~t~------~G~I~~l~~ 586 (857)
..|.+++|.++|...|... .. ...+..++ ++|+||||..||+++.. .|.+|+|.+
T Consensus 299 ~~~~~~~~g~~~~~G~v~vy~~~g~g~f~~~~l~g~~~~~~fG~sva~~gDlngDG~~Dl~VGap~~~~~~~G~vyiy~g 378 (967)
T 3ije_A 299 LFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNG 378 (967)
T ss_dssp TCEEECTTSCEEECCEEEEEECCSSSCCEEEEEECSSTTSCTTSEEEEEESTTCSSSCEEEEEETTCSSSSCCEEEEEEE
T ss_pred cccccccccccccCCcEEEEEECCCCceeeeeccCccccCCCcceEEeeeccCCCCCcceEEeccccCCCCCceEEEEec
Confidence 3578999988877777621 11 12334454 69999999999999874 567777776
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCC
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDD 666 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~ 666 (857)
..+ .... .+.. .+.+... ..+.. ....++...++|+||||.
T Consensus 379 ~~~-G~~~----------~~sq---------------~i~~~~~--------~~~~~-----~~FG~sv~~~~DldgDG~ 419 (967)
T 3ije_A 379 RST-GLNA----------VPSQ---------------ILEGQWA--------ARSMP-----PSFGYSMKGATDIDKNGY 419 (967)
T ss_dssp ETT-EECS----------SCSE---------------EEECCCC--------CSSSC-----CCEEEEEEEEECCSSSSS
T ss_pred CCC-CCcc----------ccee---------------eeccccc--------ccccc-----ccccceeeeeEccCCCCc
Confidence 321 1100 0000 0000000 00000 001233344789999999
Q ss_pred ccEEEEecC-CcEEEEeCC
Q 003012 667 LDLIVTTMN-GNVFCFSTP 684 (857)
Q Consensus 667 ~DLvv~t~~-G~V~~~~~~ 684 (857)
+||+|++.. +.+++|...
T Consensus 420 ~DL~VGa~g~~~v~l~rsr 438 (967)
T 3ije_A 420 PDLIVGAFGVDRAILYRAR 438 (967)
T ss_dssp CEEEEEEGGGTEEEEECBC
T ss_pred ccEEEeccCCCeEEEEecC
Confidence 999999863 688888864
No 10
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.51 E-value=4.1e-11 Score=131.33 Aligned_cols=209 Identities=19% Similarity=0.298 Sum_probs=139.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecc--c
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA--E 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g--~ 509 (857)
+.++++|..+|+.+|+....... ......++|++.+ | -|+++..++.|++++ .+|+.+|.++.... .
T Consensus 153 g~l~~~d~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~----~--~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 222 (376)
T 3q7m_A 153 GQLQALNEADGAVKWTVNLDMPS----LSLRGESAPTTAF----G--AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS 222 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC---------CCCCCCEEET----T--EEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred CeEEEEECCCCcEEEEEeCCCCc----eeecCCCCcEEEC----C--EEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence 67999999999999998763211 1111224566552 2 477777788999999 58999998765421 0
Q ss_pred --------eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCc
Q 003012 510 --------IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (857)
Q Consensus 510 --------i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~ 580 (857)
+...+.+.+ | -|+++..++.+++++. +|+..|........ .+.+. + .-|++++.++.
T Consensus 223 ~~~~~~~~~~~~p~~~~----~--~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~--~~~~~----~--~~l~~~~~~g~ 288 (376)
T 3q7m_A 223 TEIDRLSDVDTTPVVVN----G--VVFALAYNGNLTALDLRSGQIMWKRELGSVN--DFIVD----G--NRIYLVDQNDR 288 (376)
T ss_dssp -------CCCCCCEEET----T--EEEEECTTSCEEEEETTTCCEEEEECCCCEE--EEEEE----T--TEEEEEETTCC
T ss_pred cccccccccCCCcEEEC----C--EEEEEecCcEEEEEECCCCcEEeeccCCCCC--CceEE----C--CEEEEEcCCCe
Confidence 223344331 2 5777788899999987 89999997754321 12221 1 24888888899
Q ss_pred EEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE-Ee-CCcceeeEEE
Q 003012 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV-DI-GETSYSMVLA 658 (857)
Q Consensus 581 I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i-~~-g~~~~s~~~a 658 (857)
+++++..+|+.+|..+.... .....+.+.+ -.|++++.+|.+++++..+|...|. .. +....+.+.+
T Consensus 289 l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~----------~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~ 357 (376)
T 3q7m_A 289 VMALTIDGGVTLWTQSDLLH-RLLTSPVLYN----------GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA 357 (376)
T ss_dssp EEEEETTTCCEEEEECTTTT-SCCCCCEEET----------TEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE
T ss_pred EEEEECCCCcEEEeecccCC-CcccCCEEEC----------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE
Confidence 99999999999887652222 2223333331 2488899999999999888877763 44 2333444554
Q ss_pred EeecCCCCccEEEEecCCcEEEEe
Q 003012 659 DNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 659 ~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
. + ..|++++.+|.+++|+
T Consensus 358 ~----~--~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 358 A----D--GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp E----T--TEEEEEBTTSCEEEEE
T ss_pred E----C--CEEEEEeCCCEEEEEe
Confidence 3 2 3589999999999986
No 11
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=99.47 E-value=2.3e-12 Score=151.94 Aligned_cols=211 Identities=20% Similarity=0.331 Sum_probs=128.2
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee----CCeEEEEeCCCc-eeeeeee
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS----FGLFYVLDHHGK-IREKFPL 505 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~----~G~Lyv~~~dG~-~~~~~~~ 505 (857)
+.|.++.++..++. |....... .......+...+++++|+|+||..||+++.. .|.+|+|..++. ......+
T Consensus 188 w~G~v~~~~~~~~~--~~~~~~~~-~~~~~~sy~GySva~gD~ngDG~~DlvvGAP~~~~~G~V~v~~~~~~~~~~~~~l 264 (597)
T 3v4v_A 188 WTGSLFVYNITTNK--YKAFLDKQ-NQVKFGSYLGYSVGAGHFRSQHTTEVVGGAPQHEQIGKAYIFSIDEKELNILHEM 264 (597)
T ss_dssp HTBEEEEEETTTTB--CCBBCCTT-CCSCTTCCBTSSEEEECSSCTTSCEEEEEETTGGGTCEEEEEEECSSSEEEEEEE
T ss_pred cccceEEEEccCce--eeeccccc-ccccccCcCccEEEEEEECCCCCeEEEEecccccCCceEEEEecCCCceeEEEEe
Confidence 44778888776543 33221111 1122334555678999999999999999863 478999886443 2212222
Q ss_pred ec---cc-eeceeEEEeecCCCCeEEEEEe-------CCCcEEEEecCCCee--EEEc--cc------cccccCCE-EEe
Q 003012 506 EM---AE-IQGAVVAADINDDGKIELVTTD-------THGNVAAWTAEGKGI--WEQH--LK------SLVTQGPS-IGD 563 (857)
Q Consensus 506 ~~---g~-i~ss~~vaD~DGDG~~DLvv~~-------~~G~l~~~~~~G~~~--W~~~--~~------~~~~~~va-vgD 563 (857)
.. +. ...+++++|+|+||..||+++. ..|.+++|.++|... |... +. ...+.+++ ++|
T Consensus 265 ~G~~~g~~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~gD 344 (597)
T 3v4v_A 265 KGKKLGSYFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGD 344 (597)
T ss_dssp ECSSTTCCTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEECCCC
T ss_pred cccccCCCCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccccccc
Confidence 21 11 3356889999999999999985 347899997765543 5422 11 12244555 689
Q ss_pred cCCCCcccEEEEec-----CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcC
Q 003012 564 VDGDGHSDVVVPTL-----SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDG 638 (857)
Q Consensus 564 lDGDG~~DLvv~t~-----~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg 638 (857)
+|+||..||+|+.. .|.+|+|.+..+.....+. .. +.+...
T Consensus 345 lngDG~~Dl~VGap~~~~~~G~vyv~~g~~~g~~~~~s----------q~----------------i~g~~~-------- 390 (597)
T 3v4v_A 345 IDNDGFEDVAIGAPQEDDLQGAIYIYNGRADGISSTFS----------QR----------------IEGLQI-------- 390 (597)
T ss_dssp SSCSSSCCEEEEETTHHHHTBEEEEECEETTEECSSCS----------EE----------------EEGGGT--------
T ss_pred cCCCCCcceEEecccccCCCCcEEEecCCCCCcccccc----------EE----------------Eecccc--------
Confidence 99999999999874 4788888764221110000 00 000000
Q ss_pred CCCceEEEEeCCcceeeEEEEeecCCCCccEEEEec-CCcEEEEeCC
Q 003012 639 PTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTM-NGNVFCFSTP 684 (857)
Q Consensus 639 ~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~-~G~V~~~~~~ 684 (857)
..+ .....++...++|+|+||.+||+|+.. .+.+++|...
T Consensus 391 ~~~------~~~fG~sv~g~~DlngDG~~DL~VGa~~~~~v~~lrsr 431 (597)
T 3v4v_A 391 SKS------LSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVLLRTR 431 (597)
T ss_dssp CTT------CCSEEEEEEEEECSSSSSSCEEEEEEGGGTEEEEECBC
T ss_pred ccc------ccccceeEEcccccCCCCCccEEEeccCCCeEEEEccC
Confidence 000 000123334478999999999999985 6888888863
No 12
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=99.38 E-value=2.9e-12 Score=158.78 Aligned_cols=176 Identities=16% Similarity=0.296 Sum_probs=115.1
Q ss_pred cccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCcccccc
Q 003012 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRA 462 (857)
Q Consensus 383 i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~ 462 (857)
.-.+.+++|+||||..|++++...+. ...|.++.++..+-.. ...+. +.....
T Consensus 222 ~G~sVa~gD~ngDG~~DlvvGaP~~~---------------------~~~G~V~i~~~~~~~~--~~~~~----g~~~gs 274 (967)
T 3ije_A 222 LGYSVAVGDFNGDGIDDFVSGVPRAA---------------------RTLGMVYIYDGKNMSS--LYNFT----GEQMAA 274 (967)
T ss_dssp BTSEEEEECCSSSSSCEEEEEETTHH---------------------HHTCEEEEECSSSSCE--EEEEE----CSSTTS
T ss_pred cceEEEEEEECCCCCeEEEEEecccC---------------------CCCcEEEEEeCCCcee--eeEec----ccccCC
Confidence 34577899999999999998754210 0126677775432111 11111 112234
Q ss_pred ccccccEEEecCCCCCccEEEEe-------------eCCeEEEEeCCCceeeeeeeec------cceeceeE-EEeecCC
Q 003012 463 YIYSSPTVVDLDGDGNLDILVGT-------------SFGLFYVLDHHGKIREKFPLEM------AEIQGAVV-AADINDD 522 (857)
Q Consensus 463 ~~~sspavaDlDGDG~~DIvVg~-------------~~G~Lyv~~~dG~~~~~~~~~~------g~i~ss~~-vaD~DGD 522 (857)
+...+++++|+||||..||+|+. ..|.+|+|.++|...+. +... +.....++ ++|+|+|
T Consensus 275 ~fG~sva~~D~ngDG~~DLvVgaP~~~~~~~~g~~~~~G~v~vy~~~g~g~f~-~~~l~g~~~~~~fG~sva~~gDlngD 353 (967)
T 3ije_A 275 YFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQ-TTKLNGFEVFARFGSAIAPLGDLDQD 353 (967)
T ss_dssp CTTSEEEEECTTSSSCCEEEEEETTCEEECTTSCEEECCEEEEEECCSSSCCE-EEEEECSSTTSCTTSEEEEEESTTCS
T ss_pred ceeEEEEEEecCCCCCceEEEEcccccccccccccccCCcEEEEEECCCCcee-eeeccCccccCCCcceEEeeeccCCC
Confidence 44467889999999999999994 35789999876654443 2111 12233454 6999999
Q ss_pred CCeEEEEEeC------CCcEEEEecCCCeeEEEc---cc---------cccccCCE-EEecCCCCcccEEEEecC-CcEE
Q 003012 523 GKIELVTTDT------HGNVAAWTAEGKGIWEQH---LK---------SLVTQGPS-IGDVDGDGHSDVVVPTLS-GNIY 582 (857)
Q Consensus 523 G~~DLvv~~~------~G~l~~~~~~G~~~W~~~---~~---------~~~~~~va-vgDlDGDG~~DLvv~t~~-G~I~ 582 (857)
|..||+++.. .|.+++|.+++.+.+... +. ...+.+++ .+|+||||.+||+++... +.++
T Consensus 354 G~~Dl~VGap~~~~~~~G~vyiy~g~~~G~~~~~sq~i~~~~~~~~~~~~FG~sv~~~~DldgDG~~DL~VGa~g~~~v~ 433 (967)
T 3ije_A 354 GFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAI 433 (967)
T ss_dssp SSCEEEEEETTCSSSSCCEEEEEEEETTEECSSCSEEEECCCCCSSSCCCEEEEEEEEECCSSSSSCEEEEEEGGGTEEE
T ss_pred CCcceEEeccccCCCCCceEEEEecCCCCCcccceeeeccccccccccccccceeeeeEccCCCCcccEEEeccCCCeEE
Confidence 9999999874 578999988776554211 11 11223344 689999999999999873 6777
Q ss_pred EEEC
Q 003012 583 VLSG 586 (857)
Q Consensus 583 ~l~~ 586 (857)
+|+.
T Consensus 434 l~rs 437 (967)
T 3ije_A 434 LYRA 437 (967)
T ss_dssp EECB
T ss_pred EEec
Confidence 7764
No 13
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Probab=99.34 E-value=5e-12 Score=149.06 Aligned_cols=178 Identities=22% Similarity=0.316 Sum_probs=117.0
Q ss_pred cccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCcccccc
Q 003012 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRA 462 (857)
Q Consensus 383 i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~ 462 (857)
.-.+++++|+|+||..|||++...+. ..|.++.|....+. |.....+. +.....
T Consensus 218 ~GySva~gD~ngDG~~DlvvGAP~~~----------------------~~G~V~v~~~~~~~--~~~~~~l~--G~~~g~ 271 (597)
T 3v4v_A 218 LGYSVGAGHFRSQHTTEVVGGAPQHE----------------------QIGKAYIFSIDEKE--LNILHEMK--GKKLGS 271 (597)
T ss_dssp BTSSEEEECSSCTTSCEEEEEETTGG----------------------GTCEEEEEEECSSS--EEEEEEEE--CSSTTC
T ss_pred CccEEEEEEECCCCCeEEEEeccccc----------------------CCceEEEEecCCCc--eeEEEEec--ccccCC
Confidence 44578999999999999998865210 12678888665543 44322211 122334
Q ss_pred ccccccEEEecCCCCCccEEEEe-------eCCeEEEEeCCCce--eeee--eeec-----cceeceeE-EEeecCCCCe
Q 003012 463 YIYSSPTVVDLDGDGNLDILVGT-------SFGLFYVLDHHGKI--REKF--PLEM-----AEIQGAVV-AADINDDGKI 525 (857)
Q Consensus 463 ~~~sspavaDlDGDG~~DIvVg~-------~~G~Lyv~~~dG~~--~~~~--~~~~-----g~i~ss~~-vaD~DGDG~~ 525 (857)
+...+++++|+|+||..||+|+. ..|.+|+|.+.|.. .+.. .+.. +....+++ ++|+|+||..
T Consensus 272 ~fG~sva~~D~ngDG~~DlvVGap~~~~~~~~G~v~vy~~~g~g~~~~~~~~~l~g~~~~~~~FG~sva~~gDlngDG~~ 351 (597)
T 3v4v_A 272 YFGASVCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGSDKYAARFGESIVNLGDIDNDGFE 351 (597)
T ss_dssp CTTSEEEEECTTCSSSCEEEEEETTCCSSSCCCEEEEEEECSSSSCEECCSSCBCTTCCTTCCTTSCEECCCCSSCSSSC
T ss_pred CCcceEEEEeeCCCCCceEEEEcccccCCCcCCeEEEEEECCCCcceeccceEEeCCcccccccccccccccccCCCCCc
Confidence 45567889999999999999986 34788888754432 1321 1110 11223454 6899999999
Q ss_pred EEEEEeC-----CCcEEEEecCCCeeE---EEcccc--------ccccCCE-EEecCCCCcccEEEEec-CCcEEEEEC
Q 003012 526 ELVTTDT-----HGNVAAWTAEGKGIW---EQHLKS--------LVTQGPS-IGDVDGDGHSDVVVPTL-SGNIYVLSG 586 (857)
Q Consensus 526 DLvv~~~-----~G~l~~~~~~G~~~W---~~~~~~--------~~~~~va-vgDlDGDG~~DLvv~t~-~G~I~~l~~ 586 (857)
||+++.. .|.+++|.+++.+.. ...+.. ..+.+++ .+|+|+||.+||+++.. ++.+++|+.
T Consensus 352 Dl~VGap~~~~~~G~vyv~~g~~~g~~~~~sq~i~g~~~~~~~~~fG~sv~g~~DlngDG~~DL~VGa~~~~~v~~lrs 430 (597)
T 3v4v_A 352 DVAIGAPQEDDLQGAIYIYNGRADGISSTFSQRIEGLQISKSLSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVLLRT 430 (597)
T ss_dssp CEEEEETTHHHHTBEEEEECEETTEECSSCSEEEEGGGTCTTCCSEEEEEEEEECSSSSSSCEEEEEEGGGTEEEEECB
T ss_pred ceEEecccccCCCCcEEEecCCCCCccccccEEEecccccccccccceeEEcccccCCCCCccEEEeccCCCeEEEEcc
Confidence 9999974 478999987665432 111111 1233444 68999999999999986 578888774
No 14
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=99.31 E-value=1.3e-11 Score=146.28 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=112.4
Q ss_pred eceeEEEeecCCCCeEEEEEeC-----CCcEEEEecCCCeeEEE----ccccccccCCEEEecCCCCcccEEEEec----
Q 003012 511 QGAVVAADINDDGKIELVTTDT-----HGNVAAWTAEGKGIWEQ----HLKSLVTQGPSIGDVDGDGHSDVVVPTL---- 577 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~-----~G~l~~~~~~G~~~W~~----~~~~~~~~~vavgDlDGDG~~DLvv~t~---- 577 (857)
..+++++|+|+||..|++++.. .|.+++|...+...... ...+..+.+++++|+||||..||+++..
T Consensus 232 G~sva~gd~ngDg~~DlvvGaP~~~~~~G~V~v~~~~~~~~~~~l~G~q~gs~FG~sva~~D~NgDG~~DLvVGAP~~~~ 311 (632)
T 3vi3_A 232 GYSVAVGEFSGDDTEDFVAGVPKGNLTYGYVTILNGSDIRSLYNFSGEQMASYFGYAVAATDVNGDGLDDLLVGAPLLMD 311 (632)
T ss_dssp TSSEEEECCSSSSSCEEEEEEEEEETTEEEEEEECSSSCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEEEEEETTCEE
T ss_pred ccEEEEEEecCCCCeEEEEeccccCCccCEEEEEECCCCcEEEEEecccccCcCcceEEEEecCCCCccceeeecccccc
Confidence 3468899999999999999942 37888887643222111 1123445678899999999999999853
Q ss_pred ---------CCcEEEEECCCCCeeccccccc-----CCccccceE-EEeccCCCCCCCCeEEEEEec------CCeEEEE
Q 003012 578 ---------SGNIYVLSGKDGSKVRPYPYRT-----HGRVMNQVL-LVDLTKRGEKSKGLTIVTTSF------DGYLYLI 636 (857)
Q Consensus 578 ---------~G~I~~l~~~~G~~~~~~~~~~-----~g~~~s~~~-v~DlDgDg~gDG~~DLvv~s~------dG~ly~~ 636 (857)
.|.+|+|.+..+...+...... ...+...++ ++|+| +||..||+++.. .|.+|++
T Consensus 312 ~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~~~~~FG~sva~~gDln----gDG~~DlaVGap~~~~~~~G~Vyv~ 387 (632)
T 3vi3_A 312 RTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDLD----QDGYNDVAIGAPFGGETQQGVVFVF 387 (632)
T ss_dssp ECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCSTTCCGGGEEEEEESSS----SSSSCEEEEEETTCSTTSSCEEEEE
T ss_pred cccccccccCCEEEEEEcCCCCccccCceEecCccccCCCceEEEeeeccC----CCCCcCEEEeCCcCCcCCCceEEEE
Confidence 4899999875432222211111 134455665 79999 578999999985 5889998
Q ss_pred cCCCCce-----EEEEeCC------ccee-eEEE-EeecCCCCccEEEEec-CCcEEEEeCC
Q 003012 637 DGPTSCA-----DVVDIGE------TSYS-MVLA-DNVDGGDDLDLIVTTM-NGNVFCFSTP 684 (857)
Q Consensus 637 dg~~g~~-----~~i~~g~------~~~s-~~~a-~DlDGDG~~DLvv~t~-~G~V~~~~~~ 684 (857)
.|...-. ..+.-.. ..+. ++.. +|+||||.+||+|+.. ...+++|...
T Consensus 388 ~G~~~Gl~~~~sq~i~g~~~~~~~~~~FG~sla~~~DlngDG~~DL~VGa~g~d~v~llrsr 449 (632)
T 3vi3_A 388 PGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDKAVVYRGR 449 (632)
T ss_dssp CEETTEECSSCSEEECCSSCCCSSCCCTTSSEEESSCCSSSSCCCEEEEEGGGTEEEEECBC
T ss_pred ecCCCCCCcccceEEecCccccccccccceeEEeeeccCCCCceeEEEecCCCceEEEEcCC
Confidence 7654321 1221111 1111 3444 5999999999999986 4467777753
No 15
>3vi3_A Integrin alpha-5; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_A*
Probab=99.28 E-value=3.6e-11 Score=142.50 Aligned_cols=178 Identities=20% Similarity=0.314 Sum_probs=116.0
Q ss_pred ccccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCccccc
Q 003012 382 HILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFR 461 (857)
Q Consensus 382 ~i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~ 461 (857)
..-.+.+++|+|+||..|+|++...+. ...|.++.|...+.... ..+. +....
T Consensus 230 y~G~sva~gd~ngDg~~DlvvGaP~~~---------------------~~~G~V~v~~~~~~~~~--~~l~----G~q~g 282 (632)
T 3vi3_A 230 YLGYSVAVGEFSGDDTEDFVAGVPKGN---------------------LTYGYVTILNGSDIRSL--YNFS----GEQMA 282 (632)
T ss_dssp CBTSSEEEECCSSSSSCEEEEEEEEEE---------------------TTEEEEEEECSSSCCEE--EEEE----CSSTT
T ss_pred CcccEEEEEEecCCCCeEEEEeccccC---------------------CccCEEEEEECCCCcEE--EEEe----ccccc
Confidence 344578899999999999999865320 01266777765332221 1121 12223
Q ss_pred cccccccEEEecCCCCCccEEEEee-------------CCeEEEEeCCCc-eeeeee--eec----cceeceeE-EEeec
Q 003012 462 AYIYSSPTVVDLDGDGNLDILVGTS-------------FGLFYVLDHHGK-IREKFP--LEM----AEIQGAVV-AADIN 520 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~DIvVg~~-------------~G~Lyv~~~dG~-~~~~~~--~~~----g~i~ss~~-vaD~D 520 (857)
.+...+++++|+|+||..||+|+.. .|.+|++.+.+. ..+... +.. .....+++ ++|+|
T Consensus 283 s~FG~sva~~D~NgDG~~DLvVGAP~~~~~~~~g~~~~~G~VyVy~g~~~g~~~~~~~~l~G~~~~~~FG~sva~~gDln 362 (632)
T 3vi3_A 283 SYFGYAVAATDVNGDGLDDLLVGAPLLMDRTPDGRPQEVGRVYVYLQHPAGIEPTPTLTLTGHDEFGRFGSSLTPLGDLD 362 (632)
T ss_dssp SCTTSEEEEECCSSSSSCEEEEEETTCEEECTTCCEEECCEEEEECBCSSCBCSSCSEEEECCSTTCCGGGEEEEEESSS
T ss_pred CcCcceEEEEecCCCCccceeeecccccccccccccccCCEEEEEEcCCCCccccCceEecCccccCCCceEEEeeeccC
Confidence 4555678899999999999999863 478999986554 222211 110 12233455 69999
Q ss_pred CCCCeEEEEEeC------CCcEEEEecCCCeeEE---Eccc---------cccccCCEE-EecCCCCcccEEEEec-CCc
Q 003012 521 DDGKIELVTTDT------HGNVAAWTAEGKGIWE---QHLK---------SLVTQGPSI-GDVDGDGHSDVVVPTL-SGN 580 (857)
Q Consensus 521 GDG~~DLvv~~~------~G~l~~~~~~G~~~W~---~~~~---------~~~~~~vav-gDlDGDG~~DLvv~t~-~G~ 580 (857)
+||..||+++.. .|.+++|...+.+.+. ..+. ...+.+++. +|+||||.+||+++.. ...
T Consensus 363 gDG~~DlaVGap~~~~~~~G~Vyv~~G~~~Gl~~~~sq~i~g~~~~~~~~~~FG~sla~~~DlngDG~~DL~VGa~g~d~ 442 (632)
T 3vi3_A 363 QDGYNDVAIGAPFGGETQQGVVFVFPGGPGGLGSKPSQVLQPLWAASHTPDFFGSALRGGRDLDGNGYPDLIVGSFGVDK 442 (632)
T ss_dssp SSSSCEEEEEETTCSTTSSCEEEEECEETTEECSSCSEEECCSSCCCSSCCCTTSSEEESSCCSSSSCCCEEEEEGGGTE
T ss_pred CCCCcCEEEeCCcCCcCCCceEEEEecCCCCCCcccceEEecCccccccccccceeEEeeeccCCCCceeEEEecCCCce
Confidence 999999999975 5789999775544321 1111 123456666 4999999999999986 456
Q ss_pred EEEEEC
Q 003012 581 IYVLSG 586 (857)
Q Consensus 581 I~~l~~ 586 (857)
+++|+.
T Consensus 443 v~llrs 448 (632)
T 3vi3_A 443 AVVYRG 448 (632)
T ss_dssp EEEECB
T ss_pred EEEEcC
Confidence 777764
No 16
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=99.22 E-value=6.5e-11 Score=146.24 Aligned_cols=176 Identities=20% Similarity=0.348 Sum_probs=113.7
Q ss_pred cccceEEEeecCCCCc-cEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCccccc
Q 003012 383 ILSTPVIADIDNDGVS-EMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFR 461 (857)
Q Consensus 383 i~sspavaDiDGDG~~-DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~ 461 (857)
...+.+++|+||||.. ++|++...+ . ...|.++.+.. .......+. +....
T Consensus 235 ~G~sva~gD~~gDG~~d~~vvGaPr~-----~----------------~~~G~V~i~~~---~~~~~~~l~----G~q~g 286 (959)
T 3fcs_A 235 WGYSVAVGEFDGDLNTTEYVVGAPTW-----S----------------WTLGAVEILDS---YYQRLHRLR----GEQMA 286 (959)
T ss_dssp TTSEEEEECCSSCSSSCEEEEEETTH-----H----------------HHTCEEEEECT---TCCEEEEEE----CSSTT
T ss_pred cccEEEEEEECCCCCeeEEEEECCcc-----c----------------CCcceEEEECC---CceEEEEec----cccCC
Confidence 3457889999999998 566654311 0 01255665532 211112221 12233
Q ss_pred cccccccEEEecCCCCCccEEEEee-------------CCeEEEEeC-CCceeeee---eeec----cceeceeE-EEee
Q 003012 462 AYIYSSPTVVDLDGDGNLDILVGTS-------------FGLFYVLDH-HGKIREKF---PLEM----AEIQGAVV-AADI 519 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~DIvVg~~-------------~G~Lyv~~~-dG~~~~~~---~~~~----g~i~ss~~-vaD~ 519 (857)
.+...+.+++|+||||..||+|+.. .|.+|+|.+ .|...+.. .+.. +....+++ ++|+
T Consensus 287 s~fG~sva~gD~NgDG~~DLvVGAP~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~~~~~FG~sva~~gD~ 366 (959)
T 3fcs_A 287 SYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDL 366 (959)
T ss_dssp SCTTSEEEEECCSSSSSCEEEEEETTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCSTTCCBTSEEEEEECS
T ss_pred CCceeEEEEEEecCCCccceeEeccccccccccccccCCceEEEEecCCCCCcccccceEEecccCCCCCceeEEeeecC
Confidence 4556678899999999999999863 478999886 44433321 1211 22334555 7899
Q ss_pred cCCCCeEEEEEeC------CCcEEEEecCCCeeEEE-------cc--ccccccCCE-EEecCCCCcccEEEEec-CCcEE
Q 003012 520 NDDGKIELVTTDT------HGNVAAWTAEGKGIWEQ-------HL--KSLVTQGPS-IGDVDGDGHSDVVVPTL-SGNIY 582 (857)
Q Consensus 520 DGDG~~DLvv~~~------~G~l~~~~~~G~~~W~~-------~~--~~~~~~~va-vgDlDGDG~~DLvv~t~-~G~I~ 582 (857)
|+||..||+++.. .|.+++|.+++.+.+.. .. ....+.+++ ++|+||||.+||+++.. ++.++
T Consensus 367 ngDG~~Dl~Vgap~~~~~~~G~Vyvy~g~~~g~~~~~~q~~~~~~~~~~~fG~sv~~~gDlngDG~~Dl~VGa~g~g~v~ 446 (959)
T 3fcs_A 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVA 446 (959)
T ss_dssp SCSSSCEEEEEETTCSTTSSCEEEEECEETTEECSSCSEEEECCSCTTCCTTSSEEEEECSSSSSSCEEEEEEGGGTEEE
T ss_pred CCCCCcceEEecccCCCCCCceEEEEecCCCCcccccceeeccCcCCcccccceeeeeeccCCCCCCCEEEecCCCCeEE
Confidence 9999999999973 47899998765544311 11 123345666 79999999999999987 67888
Q ss_pred EEEC
Q 003012 583 VLSG 586 (857)
Q Consensus 583 ~l~~ 586 (857)
+|+.
T Consensus 447 ~~rs 450 (959)
T 3fcs_A 447 VYRA 450 (959)
T ss_dssp EECB
T ss_pred EEec
Confidence 8875
No 17
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=7.8e-09 Score=113.13 Aligned_cols=173 Identities=19% Similarity=0.282 Sum_probs=113.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccc--cccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFR--AYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~--~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
+.++++|..+|+++|.............. .....+|.+.+ .-|++++.++.+++++ .+|+.+|..+.. .
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~ 269 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN------GVVFALAYNGNLTALDLRSGQIMWKRELG--S 269 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET------TEEEEECTTSCEEEEETTTCCEEEEECCC--C
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC------CEEEEEecCcEEEEEECCCCcEEeeccCC--C
Confidence 67999999999999998764221110000 01234555543 3577777788999999 489999877643 2
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEc-cccccccCCEEEecCCCCcccEEEEecCCcEEEEECC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH-LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~-~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~ 587 (857)
...+.+. ++ -|++++.++.+++++. +|+.+|... ........+.+.+ .-|++++.+|.+++++..
T Consensus 270 -~~~~~~~----~~--~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------~~l~v~~~~g~l~~~d~~ 336 (376)
T 3q7m_A 270 -VNDFIVD----GN--RIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYN------GNLVVGDSEGYLHWINVE 336 (376)
T ss_dssp -EEEEEEE----TT--EEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEET------TEEEEECTTSEEEEEETT
T ss_pred -CCCceEE----CC--EEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEEC------CEEEEEeCCCeEEEEECC
Confidence 2223332 22 5788888899999986 899999976 3333334455542 248888889999999999
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
+|+.+|.++.. .+.+...+.+. + -.|++++.+|.+|+++
T Consensus 337 tG~~~~~~~~~-~~~~~~~~~~~--~--------~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 337 DGRFVAQQKVD-SSGFQTEPVAA--D--------GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TCCEEEEEECC-TTCBCSCCEEE--T--------TEEEEEBTTSCEEEEE
T ss_pred CCcEEEEEecC-CCcceeCCEEE--C--------CEEEEEeCCCEEEEEe
Confidence 99998876542 22333444443 1 2588899999998875
No 18
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=99.14 E-value=3.3e-10 Score=129.37 Aligned_cols=176 Identities=22% Similarity=0.356 Sum_probs=113.9
Q ss_pred cccceEEEeecCCC-CccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCccccc
Q 003012 383 ILSTPVIADIDNDG-VSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFR 461 (857)
Q Consensus 383 i~sspavaDiDGDG-~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~ 461 (857)
.-.+++++|+|+|| ..++|++...+. ...|.+++|.. +-+. ...+. +....
T Consensus 235 lGySv~~gd~~gdg~~~~~vvGAP~~~---------------------~~~G~V~i~~~-~~~~--~~~l~----G~q~g 286 (457)
T 3t3p_A 235 WGYSVAVGEFDGDLNTTEYVVGAPTWS---------------------WTLGAVEILDS-YYQR--LHRLR----GEQMA 286 (457)
T ss_dssp TTSEEEEECCSSCTTSCEEEEEETTHH---------------------HHTCEEEEECT-TCCE--EEEEE----CSSTT
T ss_pred ceeEEEEEEeCCCCceeEEEEcCCCCC---------------------CccceEEEEcC-CCeE--EEEec----ccccC
Confidence 34578899999997 557777654210 01266777742 1111 12221 12334
Q ss_pred cccccccEEEecCCCCCccEEEEe-------------eCCeEEEEeC-CCceeeee---eeec----cceeceeE-EEee
Q 003012 462 AYIYSSPTVVDLDGDGNLDILVGT-------------SFGLFYVLDH-HGKIREKF---PLEM----AEIQGAVV-AADI 519 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~DIvVg~-------------~~G~Lyv~~~-dG~~~~~~---~~~~----g~i~ss~~-vaD~ 519 (857)
.+...+.+++|+|+||..||+|+. ..|++|++.+ .|...+.. .+.. .....+++ ++|+
T Consensus 287 s~fG~sva~gDvNgDG~~DLvVGAP~~~~~~~~~~~~~~G~VyV~~g~~g~~~~~~~~~~l~G~~~~~~fG~sva~~gD~ 366 (457)
T 3t3p_A 287 SYFGHSVAVTDVNGDGRHDLLVGAPLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDL 366 (457)
T ss_dssp SCTTSEEEEECCSSSSCCEEEEEETTCEEEETTTEEEECCEEEEECCCSSSCCCCSCSEEEECCSTTCCTTSEEEEEECS
T ss_pred CCCcceEEEEEeCCCCccceeeccccccccccccccCCCCEEEEEecCCCCCccccCceEEeCCcCCCCCCceEEeccCC
Confidence 555667889999999999999986 3578999876 34322221 1210 12233565 7899
Q ss_pred cCCCCeEEEEEeC------CCcEEEEecCCCeeEE---Eccc------cccccCCE-EEecCCCCcccEEEEec-CCcEE
Q 003012 520 NDDGKIELVTTDT------HGNVAAWTAEGKGIWE---QHLK------SLVTQGPS-IGDVDGDGHSDVVVPTL-SGNIY 582 (857)
Q Consensus 520 DGDG~~DLvv~~~------~G~l~~~~~~G~~~W~---~~~~------~~~~~~va-vgDlDGDG~~DLvv~t~-~G~I~ 582 (857)
|+||..||+++.. .|.+++|.+++.+.+. ..+. ...+.+++ ++|+|+||.+||+++.. ++.++
T Consensus 367 ngDG~~Dl~vgap~~~~~~~G~vyv~~G~~~G~~~~~~q~l~~~~~~~~~fG~sv~~~gDlngDG~~Dl~VGa~g~~~v~ 446 (457)
T 3t3p_A 367 DRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDIDDNGYPDLIVGAYGANQVA 446 (457)
T ss_dssp SCSSSCEEEEEETTCSTTSSCEEEEECEETTEECSSCSEEEECSSCTTCCTTSEEEEEECSSSSSSCEEEEEEGGGTEEE
T ss_pred CCCCCcceeEeccccCCCCCceEEEEeCCCCCcccCcceEEeCCccccccCcceeeeeeccCCCCCccEEEecCCCCeEE
Confidence 9999999999974 5889999776554432 1111 12334555 79999999999999987 57888
Q ss_pred EEEC
Q 003012 583 VLSG 586 (857)
Q Consensus 583 ~l~~ 586 (857)
+|+.
T Consensus 447 l~rs 450 (457)
T 3t3p_A 447 VYRA 450 (457)
T ss_dssp EECB
T ss_pred EeCC
Confidence 8874
No 19
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=3.6e-08 Score=104.62 Aligned_cols=206 Identities=25% Similarity=0.429 Sum_probs=134.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceec
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQG 512 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~s 512 (857)
+.+++++.+ |+..|..... .....++++ +.+| .|++++.++.|+.++..|+..|.++.. .....
T Consensus 117 ~~l~~~d~~-g~~~~~~~~~---------~~~~~~~~~---~~~g--~l~vgt~~~~l~~~d~~g~~~~~~~~~-~~~~~ 180 (330)
T 3hxj_A 117 GHLYAINTD-GTEKWRFKTK---------KAIYATPIV---SEDG--TIYVGSNDNYLYAINPDGTEKWRFKTN-DAITS 180 (330)
T ss_dssp SEEEEECTT-SCEEEEEECS---------SCCCSCCEE---CTTS--CEEEECTTSEEEEECTTSCEEEEEECS-SCCCS
T ss_pred CEEEEEcCC-CCEEEEEcCC---------CceeeeeEE---cCCC--EEEEEcCCCEEEEECCCCCEeEEEecC-CCcee
Confidence 568999998 8999987642 112233433 3344 488888888999999779888877654 22333
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCee
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKV 592 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~ 592 (857)
.+. ++.+|. |+++. +.+++++.+|+..|...........+.+ +.|| .|++++.++.+++++ .+|..+
T Consensus 181 ~~~---~d~~g~--l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~---~~~g--~l~v~t~~~gl~~~~-~~g~~~ 247 (330)
T 3hxj_A 181 AAS---IGKDGT--IYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAI---SEDG--TIYVTSLDGHLYAIN-PDGTEK 247 (330)
T ss_dssp CCE---ECTTCC--EEEES--SSEEEECTTSCEEEEECCSSCCCSCCEE---CTTS--CEEEEETTTEEEEEC-TTSCEE
T ss_pred eeE---EcCCCE--EEEEe--CEEEEECCCCcEEEEEccCCcceeceEE---CCCC--eEEEEcCCCeEEEEC-CCCCEe
Confidence 333 245564 77776 8899999899999997755433333333 4455 588888889999996 478877
Q ss_pred cccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCccEEE
Q 003012 593 RPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIV 671 (857)
Q Consensus 593 ~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv 671 (857)
|.+.. .......+.+ |-+ -.|++++.+|.+++++. ++...+ ..........+. +|.||. |++
T Consensus 248 ~~~~~--~~~~~~~~~~-~~~--------g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~---~d~~g~--l~~ 310 (330)
T 3hxj_A 248 WRFKT--GKRIESSPVI-GNT--------DTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPV---IDENGT--IYF 310 (330)
T ss_dssp EEEEC--SSCCCSCCEE-CTT--------SCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCE---ECTTCC--EEE
T ss_pred EEeeC--CCCccccceE-cCC--------CeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceE---EcCCCE--EEE
Confidence 66543 2223333332 222 25889999989999986 444444 344433333333 245554 899
Q ss_pred EecCCcEEEEeCC
Q 003012 672 TTMNGNVFCFSTP 684 (857)
Q Consensus 672 ~t~~G~V~~~~~~ 684 (857)
++.+|.+++....
T Consensus 311 gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 311 GTRNGKFYALFNL 323 (330)
T ss_dssp ECTTSCEEEEEC-
T ss_pred EcCCCeEEEEecc
Confidence 9999999888764
No 20
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=99.09 E-value=2.5e-09 Score=134.30 Aligned_cols=203 Identities=19% Similarity=0.213 Sum_probs=126.6
Q ss_pred EecCCCCCccEEEEee-----CCeEEEEeCCCceeeeeee-e---c-c-ceeceeEEEeecCCCCeEEEEEeC----CCc
Q 003012 471 VDLDGDGNLDILVGTS-----FGLFYVLDHHGKIREKFPL-E---M-A-EIQGAVVAADINDDGKIELVTTDT----HGN 535 (857)
Q Consensus 471 aDlDGDG~~DIvVg~~-----~G~Lyv~~~dG~~~~~~~~-~---~-g-~i~ss~~vaD~DGDG~~DLvv~~~----~G~ 535 (857)
+++..||. ++|.. .|.++++..++...+.... . . . ...-+++++|++ |..+++++.. .|.
T Consensus 339 a~~t~d~~---~~GapG~~~w~G~v~~~~~~~~~~~~~~~~~~~~~~~sylGySVa~~~~~--g~~~~v~GAP~~~~~G~ 413 (1095)
T 3k6s_A 339 AVFTPDGP---VLGAVGSFTWSGGAFLYPPNMSPTFINMSQENVDMRDSYLGYSTELALWK--GVQSLVLGAPRYQHTGK 413 (1095)
T ss_dssp EECCTTCC---EEEESCSTTTTBEEEECCSSSCCEEECCCSSCCCCCSCCBTSSEECCCCS--SSCEEEEEETTGGGTCE
T ss_pred ceecCCcc---eEcccccCCccceeEEecCCCcceeeccccccccccccccceeeEEeccC--CceEEEEEcccccccce
Confidence 45666664 56643 3678888766654332111 0 0 1 123457777775 4568888853 478
Q ss_pred EEEEecCCCeeEEEc-------cccccccCCEEEecCCCCcccE-EEEec-------CCcEEEEECCCCCeecccccc--
Q 003012 536 VAAWTAEGKGIWEQH-------LKSLVTQGPSIGDVDGDGHSDV-VVPTL-------SGNIYVLSGKDGSKVRPYPYR-- 598 (857)
Q Consensus 536 l~~~~~~G~~~W~~~-------~~~~~~~~vavgDlDGDG~~DL-vv~t~-------~G~I~~l~~~~G~~~~~~~~~-- 598 (857)
+++|..++ ..|... ..+..+.+++++|+||||..|| +++.. .|.+|+|.+..+...|.....
T Consensus 414 V~i~~~~~-~~~~~~~~~~g~~~gs~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l~ 492 (1095)
T 3k6s_A 414 AVIFTQVS-RQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLY 492 (1095)
T ss_dssp EEEEECCT-TTCCEEEEECCSSTTSCTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSCC
T ss_pred EEEEEecC-CcceEEeecccCcccCcCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEee
Confidence 99998753 334421 2234567889999999999999 55532 478999987544322221111
Q ss_pred -----cCCccccceE-EEeccCCCCCCCCeEEEEEec-----CCeEEEEcCCCC--ceE----EEE---eCC--ccee-e
Q 003012 599 -----THGRVMNQVL-LVDLTKRGEKSKGLTIVTTSF-----DGYLYLIDGPTS--CAD----VVD---IGE--TSYS-M 655 (857)
Q Consensus 599 -----~~g~~~s~~~-v~DlDgDg~gDG~~DLvv~s~-----dG~ly~~dg~~g--~~~----~i~---~g~--~~~s-~ 655 (857)
..+++...++ ++|+| +||..||+++.. .|.+|++.|.++ +.. .+. ... ..+. +
T Consensus 493 g~~~~~~~~FG~sva~~gD~N----gDG~~Dl~VGAP~~~~~~G~vyi~~g~~~~g~~~~~~q~l~~~~~~~~~~~FG~s 568 (1095)
T 3k6s_A 493 GEQGHPWGRFGAALTVLGDVN----GDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQA 568 (1095)
T ss_dssp CCCSCSSCCBTSCEEEEECSS----SSSCCEEEEECTTTTTSCCBEEEEEBCSSSCBCSSCSBCCBTTSSCTTCSSEEEE
T ss_pred cccCCccccCccceEeecccC----CCCCcCEEEeCCcCCCCCCEEEEecCCCCCCccccceEEeecCCCCccccccCce
Confidence 1234455665 58999 578999999873 478898887643 211 111 010 1122 2
Q ss_pred EE-EEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 656 VL-ADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 656 ~~-a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
+. ++|+|+||.+||+|+. .|.+++|...
T Consensus 569 v~~~~D~dgDG~~DL~VGa-~G~v~v~r~~ 597 (1095)
T 3k6s_A 569 LSGGQDLTQDGLVDLAVGA-RGQVLLLRTR 597 (1095)
T ss_dssp EEECCCCSCSSSCEEEEEE-SSCEEEEEBC
T ss_pred eecccccCCCCCccEEEEc-CCCeeEeccC
Confidence 33 7799999999999998 6899999864
No 21
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=99.08 E-value=7.8e-08 Score=113.38 Aligned_cols=83 Identities=19% Similarity=0.393 Sum_probs=61.5
Q ss_pred CCcceeEEeecCce----eecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCCc---------eeecc
Q 003012 60 KNLELRWQTEVSSS----IYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSS---------VHSSP 126 (857)
Q Consensus 60 ~~~~l~w~~~~~ss----v~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~---------~~~sp 126 (857)
.++++.|+.+++.. +.+||+|+ +|+ |+|.+..+.|-+|+-.+|+.+ |-+-.... +..+|
T Consensus 42 ~~~~~~W~~~~~~~~~~g~~~~P~v~----~g~--vyv~~~~~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~g~ 113 (582)
T 1flg_A 42 FKLTPAWSYSFGDEKQRGQESQAIVS----DGV--IYVTASYSRLFALDAKTGKRL--WTYNHRLPDDIRPCCDVVNRGA 113 (582)
T ss_dssp GGCEEEEEEECCTTCCSCCCCCCEEE----TTE--EEEEETTTEEEEEESSSCCEE--EEEECCCCTTCCCSSCSCCCCC
T ss_pred CCCcEEEEEECCCccCCcceeccEEE----CCE--EEEEcCCCCEEEEECCCCcEE--EEEcCCCCcccccccccCCCcc
Confidence 46899999999864 46999997 466 445554344999999999999 98754422 22455
Q ss_pred eeeeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 127 LLYDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 127 ~~~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
.++ +| .|+++|.+|.|+.++. +|+
T Consensus 114 a~~----~~--~v~~~t~dg~l~AlD~~TG~ 138 (582)
T 1flg_A 114 AIY----GD--KVFFGTLDASVVALNKNTGK 138 (582)
T ss_dssp EEE----TT--EEEEEETTTEEEEEESSSCC
T ss_pred EEE----CC--EEEEEeCCCEEEEEECCCCC
Confidence 554 23 3889999999999997 898
No 22
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=99.08 E-value=7.9e-10 Score=136.65 Aligned_cols=172 Identities=22% Similarity=0.302 Sum_probs=112.4
Q ss_pred cccccccEEEecCCCCCc-cEEEEee-----CCeEEEEeCCCceeeeeeee---cc-ceeceeEEEeecCCCCeEEEEEe
Q 003012 462 AYIYSSPTVVDLDGDGNL-DILVGTS-----FGLFYVLDHHGKIREKFPLE---MA-EIQGAVVAADINDDGKIELVTTD 531 (857)
Q Consensus 462 ~~~~sspavaDlDGDG~~-DIvVg~~-----~G~Lyv~~~dG~~~~~~~~~---~g-~i~ss~~vaD~DGDG~~DLvv~~ 531 (857)
.+...+.+++|+|+||.. +++++.. .|.++++.. .......+. .+ ....+++++|+|+||..||+++.
T Consensus 233 sy~G~sva~gD~~gDG~~d~~vvGaPr~~~~~G~V~i~~~--~~~~~~~l~G~q~gs~fG~sva~gD~NgDG~~DLvVGA 310 (959)
T 3fcs_A 233 GYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS--YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGA 310 (959)
T ss_dssp CCTTSEEEEECCSSCSSSCEEEEEETTHHHHTCEEEEECT--TCCEEEEEECSSTTSCTTSEEEEECCSSSSSCEEEEEE
T ss_pred CccccEEEEEEECCCCCeeEEEEECCcccCCcceEEEECC--CceEEEEeccccCCCCceeEEEEEEecCCCccceeEec
Confidence 444556889999999988 5777643 478888653 211111121 11 23356889999999999999986
Q ss_pred C-------------CCcEEEEec-CCCeeEEEc---c-----ccccccCCE-EEecCCCCcccEEEEec------CCcEE
Q 003012 532 T-------------HGNVAAWTA-EGKGIWEQH---L-----KSLVTQGPS-IGDVDGDGHSDVVVPTL------SGNIY 582 (857)
Q Consensus 532 ~-------------~G~l~~~~~-~G~~~W~~~---~-----~~~~~~~va-vgDlDGDG~~DLvv~t~------~G~I~ 582 (857)
. .|.+++|.. .|...|... + ....+.+++ ++|+||||..||+++.. .|.+|
T Consensus 311 P~~~~~~~~~~~~~~G~VyV~~~~~g~~~~~~~~~~l~G~~~~~~FG~sva~~gD~ngDG~~Dl~Vgap~~~~~~~G~Vy 390 (959)
T 3fcs_A 311 PLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVL 390 (959)
T ss_dssp TTCEEEETTEEEEECBEEEEECCCSTTCCCCSCSEEEECCSTTCCBTSEEEEEECSSCSSSCEEEEEETTCSTTSSCEEE
T ss_pred cccccccccccccCCceEEEEecCCCCCcccccceEEecccCCCCCceeEEeeecCCCCCCcceEEecccCCCCCCceEE
Confidence 3 478899876 454444321 1 123445566 78999999999999873 58899
Q ss_pred EEECCCCCeecccccc------cCCccccceE-EEeccCCCCCCCCeEEEEEec-CCeEEEEcCC
Q 003012 583 VLSGKDGSKVRPYPYR------THGRVMNQVL-LVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGP 639 (857)
Q Consensus 583 ~l~~~~G~~~~~~~~~------~~g~~~s~~~-v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~ 639 (857)
+|.+..+......... ....+...+. ++|+| +||..||++++. .|.++++.+.
T Consensus 391 vy~g~~~g~~~~~~q~~~~~~~~~~~fG~sv~~~gDln----gDG~~Dl~VGa~g~g~v~~~rsr 451 (959)
T 3fcs_A 391 VFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDID----DNGYPDLIVGAYGANQVAVYRAQ 451 (959)
T ss_dssp EECEETTEECSSCSEEEECCSCTTCCTTSSEEEEECSS----SSSSCEEEEEEGGGTEEEEECBC
T ss_pred EEecCCCCcccccceeeccCcCCcccccceeeeeeccC----CCCCCCEEEecCCCCeEEEEecC
Confidence 9987532221111000 0123344555 89999 589999999998 5778877654
No 23
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=1.7e-07 Score=112.35 Aligned_cols=83 Identities=23% Similarity=0.537 Sum_probs=64.5
Q ss_pred CCcceeEEeecCce--eecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCCc-----------eeecc
Q 003012 60 KNLELRWQTEVSSS--IYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSS-----------VHSSP 126 (857)
Q Consensus 60 ~~~~l~w~~~~~ss--v~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~-----------~~~sp 126 (857)
.++++.|+.+++.. +.+||+|+ +|+ |+|.+..+.|-+|+-.+|+.+ |-+-.... +..+|
T Consensus 53 ~~~~~~W~~~~~~~~g~~~~P~v~----~g~--vyv~~~~~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~ 124 (677)
T 1kb0_A 53 KDLGLAWSYNLESTRGVEATPVVV----DGI--MYVSASWSVVHAIDTRTGNRI--WTYDPQIDRSTGFKGCCDVVNRGV 124 (677)
T ss_dssp GGEEEEEEEECCCCSCCCCCCEEE----TTE--EEEECGGGCEEEEETTTTEEE--EEECCCCCGGGGGGSSSCSCCCCC
T ss_pred cCccEEEEEECCCCCCceeCCEEE----CCE--EEEECCCCeEEEEECCCCcEE--EEEcCCCCccccccccccCCCCCc
Confidence 46899999999864 89999998 354 667777899999999999999 98754421 23445
Q ss_pred eeeeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 127 LLYDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 127 ~~~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
.++ +| .|++++.||.|+.++. +|+
T Consensus 125 a~~----~~--~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 125 ALW----KG--KVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp EEE----TT--EEEEECTTSEEEEEETTTCC
T ss_pred eEE----CC--EEEEEcCCCEEEEEECCCCC
Confidence 443 23 4899999999999997 798
No 24
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=99.02 E-value=3.6e-07 Score=107.44 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=63.8
Q ss_pred CCcceeEEeecCc--eeecCceEEecCCCCceeEEEcCc-ceEEEEEEC-CCCCCCCCCccccCC-----------ceee
Q 003012 60 KNLELRWQTEVSS--SIYATPLIADINSDGKLDIVVPSF-LHYLEVLEG-SDGDKMPGWPAFHQS-----------SVHS 124 (857)
Q Consensus 60 ~~~~l~w~~~~~s--sv~atp~i~d~~~dg~~~i~v~s~-~~~~~~l~g-~~g~~~~~wp~~~~~-----------~~~~ 124 (857)
.++++.|+.+++. .+.+||+|+ +|+ |+|.+. .+.|-+|+- .+|+.+ |-+-.+. .+.+
T Consensus 38 ~~l~~~W~~~~~~~~g~~~~P~v~----~g~--vyv~~~~~~~v~AlD~~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~ 109 (571)
T 2ad6_A 38 KNVKAAWSFSTGVLNGHEGAPLVI----GDM--MYVHSAFPNNTYALNLNDPGKIV--WQHKPKQDASTKAVMCCDVVDR 109 (571)
T ss_dssp GGCEEEEEEECSCCSCCCSCCEEE----TTE--EEEECSTTTCEEEEETTCTTSEE--EEECCCCCGGGGGGCTTCSCCC
T ss_pred cCccEEEEEECCCCCCcccccEEE----CCE--EEEEeCCCCEEEEEeCCCCccEE--EEEcCCCCcccccccccccccc
Confidence 4689999999985 378999998 354 566666 789999999 999999 9875442 1234
Q ss_pred cceeeeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 125 SPLLYDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 125 sp~~~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
+|.++ +| .|+|++.+|.|+.++. +|+
T Consensus 110 ~~~~~----~~--~v~v~~~dg~l~alD~~tG~ 136 (571)
T 2ad6_A 110 GLAYG----AG--QIVKKQANGHLLALDAKTGK 136 (571)
T ss_dssp CCEEE----TT--EEEEECTTSEEEEEETTTCC
T ss_pred ccEEE----CC--EEEEEeCCCEEEEEECCCCC
Confidence 56654 23 3899999999999996 898
No 25
>3t3p_A Integrin alpha-IIB; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3fcu_A* 3nif_A* 3nid_A* 3t3m_A* 3nig_A* 2vdr_A* 2vc2_A* 2vdk_A* 2vdm_A* 2vdn_A* 2vdl_A* 2vdp_A* 2vdq_A* 2vdo_A* 1txv_A* 1ty3_A* 1ty5_A* 1ty6_A* 1ty7_A* 1tye_A*
Probab=99.01 E-value=2.5e-09 Score=122.19 Aligned_cols=172 Identities=21% Similarity=0.276 Sum_probs=111.7
Q ss_pred cccccccEEEecCCCC-CccEEEEee-----CCeEEEEeCCCceeeeeeee---cc-ceeceeEEEeecCCCCeEEEEEe
Q 003012 462 AYIYSSPTVVDLDGDG-NLDILVGTS-----FGLFYVLDHHGKIREKFPLE---MA-EIQGAVVAADINDDGKIELVTTD 531 (857)
Q Consensus 462 ~~~~sspavaDlDGDG-~~DIvVg~~-----~G~Lyv~~~dG~~~~~~~~~---~g-~i~ss~~vaD~DGDG~~DLvv~~ 531 (857)
.+...+.+++|+|+|| ..+++++.. .|.++++..+-+.. ..+. .+ ....+++++|+|+||..||+++.
T Consensus 233 sylGySv~~gd~~gdg~~~~~vvGAP~~~~~~G~V~i~~~~~~~~--~~l~G~q~gs~fG~sva~gDvNgDG~~DLvVGA 310 (457)
T 3t3p_A 233 GYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDSYYQRL--HRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGA 310 (457)
T ss_dssp CCTTSEEEEECCSSCTTSCEEEEEETTHHHHTCEEEEECTTCCEE--EEEECSSTTSCTTSEEEEECCSSSSCCEEEEEE
T ss_pred CcceeEEEEEEeCCCCceeEEEEcCCCCCCccceEEEEcCCCeEE--EEecccccCCCCcceEEEEEeCCCCccceeecc
Confidence 4445568899999996 557777753 47899985322211 1121 11 23356889999999999999985
Q ss_pred C-------------CCcEEEEec-CCCeeEEEc---c-----ccccccCCE-EEecCCCCcccEEEEec------CCcEE
Q 003012 532 T-------------HGNVAAWTA-EGKGIWEQH---L-----KSLVTQGPS-IGDVDGDGHSDVVVPTL------SGNIY 582 (857)
Q Consensus 532 ~-------------~G~l~~~~~-~G~~~W~~~---~-----~~~~~~~va-vgDlDGDG~~DLvv~t~------~G~I~ 582 (857)
. .|.+++|.. .|...|... + ....+.+++ ++|+|+||..||+++.. .|.+|
T Consensus 311 P~~~~~~~~~~~~~~G~VyV~~g~~g~~~~~~~~~~l~G~~~~~~fG~sva~~gD~ngDG~~Dl~vgap~~~~~~~G~vy 390 (457)
T 3t3p_A 311 PLYMESRADRKLAEVGRVYLFLQPRGPHALGAPSLLLTGTQLYGRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVL 390 (457)
T ss_dssp TTCEEEETTTEEEECCEEEEECCCSSSCCCCSCSEEEECCSTTCCTTSEEEEEECSSCSSSCEEEEEETTCSTTSSCEEE
T ss_pred ccccccccccccCCCCEEEEEecCCCCCccccCceEEeCCcCCCCCCceEEeccCCCCCCCcceeEeccccCCCCCceEE
Confidence 2 478899876 344444321 1 123345566 78999999999999875 58899
Q ss_pred EEECCCCCeeccccccc------CCccccceE-EEeccCCCCCCCCeEEEEEec-CCeEEEEcCC
Q 003012 583 VLSGKDGSKVRPYPYRT------HGRVMNQVL-LVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGP 639 (857)
Q Consensus 583 ~l~~~~G~~~~~~~~~~------~g~~~s~~~-v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~ 639 (857)
+|.+............. ...+...+. ++|+| +||..||++++. .+.++++.+.
T Consensus 391 v~~G~~~G~~~~~~q~l~~~~~~~~~fG~sv~~~gDln----gDG~~Dl~VGa~g~~~v~l~rsr 451 (457)
T 3t3p_A 391 VFLGQSEGLRSRPSQVLDSPFPTGSAFGFSLRGAVDID----DNGYPDLIVGAYGANQVAVYRAQ 451 (457)
T ss_dssp EECEETTEECSSCSEEEECSSCTTCCTTSEEEEEECSS----SSSSCEEEEEEGGGTEEEEECBC
T ss_pred EEeCCCCCcccCcceEEeCCccccccCcceeeeeeccC----CCCCccEEEecCCCCeEEEeCCC
Confidence 99875322211111111 122334555 89999 579999999997 5778877643
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.97 E-value=3.6e-09 Score=132.92 Aligned_cols=176 Identities=23% Similarity=0.328 Sum_probs=112.6
Q ss_pred cccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCcccccc
Q 003012 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRA 462 (857)
Q Consensus 383 i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~ 462 (857)
.-.+.+++|+| |..++|++...+ ...|.++.|...++. |.....+. +.....
T Consensus 386 lGySVa~~~~~--g~~~~v~GAP~~----------------------~~~G~V~i~~~~~~~--~~~~~~~~--g~~~gs 437 (1095)
T 3k6s_A 386 LGYSTELALWK--GVQSLVLGAPRY----------------------QHTGKAVIFTQVSRQ--WRMKAEVT--GTQIGS 437 (1095)
T ss_dssp BTSSEECCCCS--SSCEEEEEETTG----------------------GGTCEEEEEECCTTT--CCEEEEEC--CSSTTS
T ss_pred cceeeEEeccC--CceEEEEEcccc----------------------cccceEEEEEecCCc--ceEEeecc--cCcccC
Confidence 34577788875 456788775521 013778889877554 33322111 123345
Q ss_pred ccccccEEEecCCCCCccE-EEEee-------CCeEEEEeCCCc-eeeeee--ee------ccceeceeE-EEeecCCCC
Q 003012 463 YIYSSPTVVDLDGDGNLDI-LVGTS-------FGLFYVLDHHGK-IREKFP--LE------MAEIQGAVV-AADINDDGK 524 (857)
Q Consensus 463 ~~~sspavaDlDGDG~~DI-vVg~~-------~G~Lyv~~~dG~-~~~~~~--~~------~g~i~ss~~-vaD~DGDG~ 524 (857)
+...+.+++|+||||..|| +++.. .|.+|+|.+.+. ..|... +. .+....+++ ++|+|+||.
T Consensus 438 ~fG~sva~~DvngDG~~DllvvGAP~~~~~~~~G~Vyvy~~~~~~~~~~~~~~l~g~~~~~~~~FG~sva~~gD~NgDG~ 517 (1095)
T 3k6s_A 438 YFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRRWWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKL 517 (1095)
T ss_dssp CTTSCEEEECSSSSSSCCEEEEECSSCCSSCCCBCEEEEECCSSTTCCCSCSSCCCCCSCSSCCBTSCEEEEECSSSSSC
T ss_pred cCCceEEEEEeCCCCCccEEEECCccccCcCCCCEEEEEEeCCCCcceeeeEEeecccCCccccCccceEeecccCCCCC
Confidence 6667789999999999999 56532 478999875433 233211 11 012233455 489999999
Q ss_pred eEEEEEeC-----CCcEEEEecCCC-ee---EEEcccc--------ccccCCE-EEecCCCCcccEEEEecCCcEEEEEC
Q 003012 525 IELVTTDT-----HGNVAAWTAEGK-GI---WEQHLKS--------LVTQGPS-IGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 525 ~DLvv~~~-----~G~l~~~~~~G~-~~---W~~~~~~--------~~~~~va-vgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
.||+|+.. .|.+++|.+++. +. +...+.. ..+.+++ .+|+|+||.+||+++. .|.+++|+.
T Consensus 518 ~Dl~VGAP~~~~~~G~vyi~~g~~~~g~~~~~~q~l~~~~~~~~~~~FG~sv~~~~D~dgDG~~DL~VGa-~G~v~v~r~ 596 (1095)
T 3k6s_A 518 TDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLAVGA-RGQVLLLRT 596 (1095)
T ss_dssp CEEEEECTTTTTSCCBEEEEEBCSSSCBCSSCSBCCBTTSSCTTCSSEEEEEEECCCCSCSSSCEEEEEE-SSCEEEEEB
T ss_pred cCEEEeCCcCCCCCCEEEEecCCCCCCccccceEEeecCCCCccccccCceeecccccCCCCCccEEEEc-CCCeeEecc
Confidence 99999863 578999988765 32 2222211 1233444 6799999999999998 688999986
Q ss_pred C
Q 003012 587 K 587 (857)
Q Consensus 587 ~ 587 (857)
.
T Consensus 597 ~ 597 (1095)
T 3k6s_A 597 R 597 (1095)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.91 E-value=1.9e-06 Score=101.93 Aligned_cols=87 Identities=21% Similarity=0.281 Sum_probs=63.1
Q ss_pred CCcceeEEeecCc--eeecCceEEecCCCCceeEEEcCc-ceEEEEEEC-CCCCCCCCCccccCCc-----------eee
Q 003012 60 KNLELRWQTEVSS--SIYATPLIADINSDGKLDIVVPSF-LHYLEVLEG-SDGDKMPGWPAFHQSS-----------VHS 124 (857)
Q Consensus 60 ~~~~l~w~~~~~s--sv~atp~i~d~~~dg~~~i~v~s~-~~~~~~l~g-~~g~~~~~wp~~~~~~-----------~~~ 124 (857)
..+++.|+.+++. .+.+||+|++ |+ |+|.+. .+.|-+|+- .+|+.+ |-+-.+.. +..
T Consensus 38 ~~l~~~W~~~~g~~~g~~~tP~v~~----g~--vyv~~~~~~~v~AlD~~~tG~~l--W~~~~~~~~~~~~~~~~~~~~~ 109 (599)
T 1w6s_A 38 KQLRPAWTFSTGLLNGHEGAPLVVD----GK--MYIHTSFPNNTFALGLDDPGTIL--WQDKPKQNPAARAVACCDLVNR 109 (599)
T ss_dssp GGEEEEEEEECSCCSCCCSCCEEET----TE--EEEECSTTTCEEEEETTCTTSEE--EEECCCCCGGGGGGCSSCSCCC
T ss_pred CCCcEEEEEECCCCCCceeccEEEC----CE--EEEEeCCCCEEEEEeCCCCCcEE--EEECCCCCcccccccccccccc
Confidence 4689999999985 3689999983 54 556665 788999999 999999 98755432 123
Q ss_pred ccee--eeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 125 SPLL--YDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 125 sp~~--~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
+|.+ +| +.+ .+.|+++|.||.|+.++. +|+
T Consensus 110 g~av~p~~-g~~-~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 110 GLAYWPGD-GKT-PALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp CCEEECCC-SSS-CCEEEEECTTSEEEEEETTTCC
T ss_pred ceEEEecC-Ccc-eeEEEEEcCCCEEEEEECCCCC
Confidence 3444 21 111 134889999999999996 898
No 28
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.86 E-value=1.5e-06 Score=104.40 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=64.5
Q ss_pred CCcceeEEeecCce--eecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCC-----------ceeecc
Q 003012 60 KNLELRWQTEVSSS--IYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQS-----------SVHSSP 126 (857)
Q Consensus 60 ~~~~l~w~~~~~ss--v~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~-----------~~~~sp 126 (857)
.++++.|+.+++.. +.+||+|+ +|+ |+|.+..+.|-+|+-.+|+.+ |-+-.+. .+.++|
T Consensus 46 ~~l~~~W~~~~~~~~~~~~~P~v~----~g~--vyv~~~~~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~ 117 (689)
T 1yiq_A 46 GQLGLAWSYKLDLDRGVEATPIVV----DGV--MYTTGPFSVVYALDARDGRLI--WKYDPQSDRHRAGEACCDAVNRGV 117 (689)
T ss_dssp GGEEEEEEEECSSCSCCCCCCEEE----TTE--EEEECGGGCEEEEETTTCCEE--EEECCCCCGGGGGGCTTCSCCCCC
T ss_pred CCceEEEEEECCCCCCceecCEEE----CCE--EEEEcCCCeEEEEECCCCcee--EEEcCCCCccccccccccCCCCcc
Confidence 46899999999864 78999987 354 667777889999999999999 9874432 123456
Q ss_pred eeeeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 127 LLYDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 127 ~~~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
.++ +| .|++++.||.|+.++. +|+
T Consensus 118 ~~~----~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 118 AVW----KG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp EEE----TT--EEEEECTTSEEEEEETTTCC
T ss_pred EEE----CC--EEEEEccCCEEEEEECCCCC
Confidence 654 23 3899999999999997 798
No 29
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.80 E-value=2.8e-06 Score=101.69 Aligned_cols=83 Identities=20% Similarity=0.454 Sum_probs=63.9
Q ss_pred CCcceeEEeecCce--eecCceEEecCCCCceeEEEcCcceEEEEEECCCCCCCCCCccccCCc-----------eeecc
Q 003012 60 KNLELRWQTEVSSS--IYATPLIADINSDGKLDIVVPSFLHYLEVLEGSDGDKMPGWPAFHQSS-----------VHSSP 126 (857)
Q Consensus 60 ~~~~l~w~~~~~ss--v~atp~i~d~~~dg~~~i~v~s~~~~~~~l~g~~g~~~~~wp~~~~~~-----------~~~sp 126 (857)
.++++.|+.+++.. +.+||+|+ +|+ |+|.+....|-+|+-.+|+.+ |-+-.... +..+|
T Consensus 42 ~~l~~~W~~~~~~~~~~~~~P~v~----~g~--vyv~~~~~~v~AlD~~tG~~~--W~~~~~~~~~~~~~~~~~~~~~~~ 113 (668)
T 1kv9_A 42 RSLGLAWYMDLDNTRGLEATPLFH----DGV--IYTSMSWSRVIAVDAASGKEL--WRYDPEVAKVKARTSCCDAVNRGV 113 (668)
T ss_dssp GGEEEEEEEECSCCSCCCCCCEEE----TTE--EEEEEGGGEEEEEETTTCCEE--EEECCCCCGGGGGGCTTCSCCCCC
T ss_pred CCcceEEEEECCCCCCcccCCEEE----CCE--EEEECCCCeEEEEECCCChhc--eEECCCCCccccccccccCCccce
Confidence 57899999999864 78999998 355 666777889999999999999 98744321 23445
Q ss_pred eeeeeCCCCceEEEEEeeceeEEEEee-cCc
Q 003012 127 LLYDIDKDGVREIALATYNGEVLFFRV-SGY 156 (857)
Q Consensus 127 ~~~d~~~dg~~~~~~~~~~g~~~~~~~-~g~ 156 (857)
.++ +| .|+|+|.||.|+.++. +|+
T Consensus 114 ~~~----~~--~v~v~~~dg~l~alD~~tG~ 138 (668)
T 1kv9_A 114 ALW----GD--KVYVGTLDGRLIALDAKTGK 138 (668)
T ss_dssp EEE----BT--EEEEECTTSEEEEEETTTCC
T ss_pred EEE----CC--EEEEEcCCCEEEEEECCCCC
Confidence 554 23 4899999999999995 798
No 30
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=8.1e-06 Score=96.20 Aligned_cols=198 Identities=17% Similarity=0.223 Sum_probs=125.2
Q ss_pred eEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecc----
Q 003012 434 AIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMA---- 508 (857)
Q Consensus 434 ~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g---- 508 (857)
.|+++|..+|+++|+..................++++.+ .-|++++.++.|++++ .+|+.+|.+.....
T Consensus 79 ~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~------~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~ 152 (582)
T 1flg_A 79 RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYG------DKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGY 152 (582)
T ss_dssp EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEET------TEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTC
T ss_pred CEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEEC------CEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCc
Confidence 499999999999999986533211100001123455532 2477788889999999 59999998776421
Q ss_pred ceeceeEEEeecCCCCeEEEEEeC------CCcEEEEec-CCCeeEEEcccccc--------------------------
Q 003012 509 EIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSLV-------------------------- 555 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~------~G~l~~~~~-~G~~~W~~~~~~~~-------------------------- 555 (857)
.+.+++++.+-..+|+.-|+++.. ++.+++++. +|+.+|........
T Consensus 153 ~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~ 232 (582)
T 1flg_A 153 TMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNS 232 (582)
T ss_dssp BCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTS
T ss_pred ccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccCCCcccc
Confidence 244567776644567766666653 688999986 89999986542100
Q ss_pred ---------------ccCCEEEecCCCCccc-EEEEec------------------------CCcEEEEECCCCCeeccc
Q 003012 556 ---------------TQGPSIGDVDGDGHSD-VVVPTL------------------------SGNIYVLSGKDGSKVRPY 595 (857)
Q Consensus 556 ---------------~~~vavgDlDGDG~~D-Lvv~t~------------------------~G~I~~l~~~~G~~~~~~ 595 (857)
...+ ..|- ..+ |++++. .+.+++++..+|+.+|.+
T Consensus 233 ~~g~~~~~~~gGg~~w~~~-a~d~----~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~ 307 (582)
T 1flg_A 233 PTGKVESWSHGGGAPWQSA-SFDA----ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFY 307 (582)
T ss_dssp TTSBCGGGGGCBCCCCSCC-EEET----TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEE
T ss_pred ccccccccccCCccccCCc-eEcC----CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEE
Confidence 0001 1111 112 444442 157999999999999987
Q ss_pred ccccCC----ccccceEEEeccCCCCCCCC--eEEEEEecCCeEEEEcCCCCceEE
Q 003012 596 PYRTHG----RVMNQVLLVDLTKRGEKSKG--LTIVTTSFDGYLYLIDGPTSCADV 645 (857)
Q Consensus 596 ~~~~~g----~~~s~~~v~DlDgDg~gDG~--~DLvv~s~dG~ly~~dg~~g~~~~ 645 (857)
...... ...+.+.+.+.+. .+|. .-+++++.+|.+|+++..+|...|
T Consensus 308 q~~~~d~wd~~~~~~p~l~~~~~---~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 308 QHTPNDAWDFSGNNELVLFDYKA---KDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp ESSTTCCSCCCCCCCCEEEEEEC---SSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred eCCCCCcccccCCCCcEEEeeec---CCCCEEEEEEEECCCceEEEEECCCCCEec
Confidence 653221 1234556666521 1343 356778899999999999888776
No 31
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.61 E-value=1.3e-05 Score=84.83 Aligned_cols=167 Identities=19% Similarity=0.329 Sum_probs=109.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceec
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQG 512 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~s 512 (857)
+.+++++.+ |+..|...+. .....++.+ |.+|. |++++ +.|+.++.+|+..|.+.... ....
T Consensus 157 ~~l~~~d~~-g~~~~~~~~~---------~~~~~~~~~---d~~g~--l~v~t--~~l~~~d~~g~~~~~~~~~~-~~~~ 218 (330)
T 3hxj_A 157 NYLYAINPD-GTEKWRFKTN---------DAITSAASI---GKDGT--IYFGS--DKVYAINPDGTEKWNFYAGY-WTVT 218 (330)
T ss_dssp SEEEEECTT-SCEEEEEECS---------SCCCSCCEE---CTTCC--EEEES--SSEEEECTTSCEEEEECCSS-CCCS
T ss_pred CEEEEECCC-CCEeEEEecC---------CCceeeeEE---cCCCE--EEEEe--CEEEEECCCCcEEEEEccCC-ccee
Confidence 569999999 9999988653 112223332 34553 77777 78999998898888766542 2222
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCee
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKV 592 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~ 592 (857)
.++. +.|| .|+++..++.+++++.+|...|...........+.+ +.+| .|++++.+|.+++++. +|+..
T Consensus 219 ~~~~---~~~g--~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~---~~~g--~l~v~t~~ggl~~~d~-~g~~~ 287 (330)
T 3hxj_A 219 RPAI---SEDG--TIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVI---GNTD--TIYFGSYDGHLYAINP-DGTEK 287 (330)
T ss_dssp CCEE---CTTS--CEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEE---CTTS--CEEEECTTCEEEEECT-TSCEE
T ss_pred ceEE---CCCC--eEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceE---cCCC--eEEEecCCCCEEEECC-CCcEE
Confidence 3332 4565 578888888999998899999987655443334443 3344 5889998989999986 78887
Q ss_pred cccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCC
Q 003012 593 RPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGP 639 (857)
Q Consensus 593 ~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~ 639 (857)
|.+.. .+.....+ +.|-+ -.|++++.+|.+++....
T Consensus 288 ~~~~~--~~~~~~~~-~~d~~--------g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 288 WNFET--GSWIIATP-VIDEN--------GTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp EEEEC--SSCCCSCC-EECTT--------CCEEEECTTSCEEEEEC-
T ss_pred EEEEc--CCccccce-EEcCC--------CEEEEEcCCCeEEEEecc
Confidence 76543 22222232 23332 248889999988876543
No 32
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.51 E-value=3.3e-05 Score=90.69 Aligned_cols=152 Identities=14% Similarity=0.222 Sum_probs=97.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee------CCeEEEEe-CCCceeeeeee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS------FGLFYVLD-HHGKIREKFPL 505 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~------~G~Lyv~~-~dG~~~~~~~~ 505 (857)
+.|+++|..+|+++|+..+... .......++|++.+ | -|+++.. ++.|++++ .+|+.+|.+..
T Consensus 125 g~l~alD~~tG~~~W~~~~~~~----~~~~~~~~~P~v~~----g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 125 GHLLALDAKTGKINWEVEVCDP----KVGSTLTQAPFVAK----D--TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp SEEEEEETTTCCEEEEEECCCG----GGTCBCCSCCEEET----T--EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CEEEEEECCCCCEEEEecCCCC----CccceeccCCEEEC----C--EEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 6799999999999999876311 01113345677753 2 3566665 57899999 58999997765
Q ss_pred eccc--e------------------------------ec----eeEEEeecCCCCeEEEEEeCC----------------
Q 003012 506 EMAE--I------------------------------QG----AVVAADINDDGKIELVTTDTH---------------- 533 (857)
Q Consensus 506 ~~g~--i------------------------------~s----s~~vaD~DGDG~~DLvv~~~~---------------- 533 (857)
.... . .. .....|.. +| -|+++..+
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g--~vy~~~g~~~~~~~~~~~gd~~y~ 271 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LN--LFYYGSGNPAPWNETMRPGDNKWT 271 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TT--EEEEECCCCSCSCGGGSCSCCTTT
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CC--eEEEECCCCccccCCccCCCceeE
Confidence 3110 0 00 11223321 12 24454422
Q ss_pred CcEEEEec-CCCeeEEEccccc------cccCCEEEecCCCCcc-c-EEEEecCCcEEEEECCCCCeeccccc
Q 003012 534 GNVAAWTA-EGKGIWEQHLKSL------VTQGPSIGDVDGDGHS-D-VVVPTLSGNIYVLSGKDGSKVRPYPY 597 (857)
Q Consensus 534 G~l~~~~~-~G~~~W~~~~~~~------~~~~vavgDlDGDG~~-D-Lvv~t~~G~I~~l~~~~G~~~~~~~~ 597 (857)
+.+++++. +|+.+|..+.... ....+.+.|...||+. . +++++.+|.+++++..+|+.+|.++.
T Consensus 272 ~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc
Confidence 24899986 8999999875421 2356777776556652 3 55677789999999999999987654
No 33
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.37 E-value=2.6e-05 Score=92.26 Aligned_cols=199 Identities=15% Similarity=0.161 Sum_probs=122.7
Q ss_pred ceEEEEEC-CCCceEEEEeccCCCCcccc--ccccccccEEEecCCCCC--ccEEEEeeCCeEEEEe-CCCceeeeeeee
Q 003012 433 GAIVVFNL-DTKQVKWTTDLDLSTDNASF--RAYIYSSPTVVDLDGDGN--LDILVGTSFGLFYVLD-HHGKIREKFPLE 506 (857)
Q Consensus 433 G~v~a~d~-~tG~i~W~~~l~ls~~~~~~--~~~~~sspavaDlDGDG~--~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~ 506 (857)
+.|+++|. .+|+++|+..+.......+. .......+++.- . +|. .-|++++.++.|++++ .+|+.+|.....
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~-~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~ 150 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWP-G-DGKTPALILKTQLDGNVAALNAETGETVWKVENS 150 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEEC-C-CSSSCCEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEe-c-CCcceeEEEEEcCCCEEEEEECCCCCEEEeecCC
Confidence 56999999 99999999976532211000 001123355521 1 121 1278888889999999 599999987654
Q ss_pred cc----ceeceeEEEeecCCCCeEEEEEeC------CCcEEEEec-CCCeeEEEccccccc-------------------
Q 003012 507 MA----EIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSLVT------------------- 556 (857)
Q Consensus 507 ~g----~i~ss~~vaD~DGDG~~DLvv~~~------~G~l~~~~~-~G~~~W~~~~~~~~~------------------- 556 (857)
.. .+.+.+++.+ | -|+++.. .+.+++|+. +|+.+|+........
T Consensus 151 ~~~~~~~~~ssP~v~~----g--~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~ 224 (599)
T 1w6s_A 151 DIKVGSTLTIAPYVVK----D--KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224 (599)
T ss_dssp CGGGTCBCCSCCEEET----T--EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred CCCccceeecCCEEEC----C--EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccc
Confidence 21 3455666653 3 3555553 688999996 899999976432110
Q ss_pred --------------c----CCEEEecCCCCcccEEEEecC----------------CcEEEEECCCCCeecccccccCCc
Q 003012 557 --------------Q----GPSIGDVDGDGHSDVVVPTLS----------------GNIYVLSGKDGSKVRPYPYRTHGR 602 (857)
Q Consensus 557 --------------~----~vavgDlDGDG~~DLvv~t~~----------------G~I~~l~~~~G~~~~~~~~~~~g~ 602 (857)
. .....|... | -|++++.+ +.+++++..+|+.+|.+.......
T Consensus 225 ~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g--~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGT-N--LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTT-T--EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred cccccCCCcceecCCCccccceeEeCCC-C--EEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 011223211 1 24555443 379999999999999876543311
Q ss_pred ----cccceEEEeccCCCCCCCC--eEEEEEecCCeEEEEcCCCCceEE
Q 003012 603 ----VMNQVLLVDLTKRGEKSKG--LTIVTTSFDGYLYLIDGPTSCADV 645 (857)
Q Consensus 603 ----~~s~~~v~DlDgDg~gDG~--~DLvv~s~dG~ly~~dg~~g~~~~ 645 (857)
..+.+.+.|+.. .+|. .-++.++.+|.+|+++..+|...|
T Consensus 302 wd~d~~~~p~l~d~~~---~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKD---KDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp SCCCCCCCCEEEEEEC---TTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccCCCccEEEeccc---cCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 234566677520 1333 345667889999999998887776
No 34
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.35 E-value=1.6e-05 Score=95.54 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=121.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCcccc--ccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeee-c-
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASF--RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLE-M- 507 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~--~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~-~- 507 (857)
+.|+++|..+|+++|+............ ......++++.+ .-|++++.++.|++++ .+|+.+|.+... .
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~ 153 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWK------GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADH 153 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEET------TEEEEECTTSEEEEEETTTCCEEEEEECCSCT
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEEC------CEEEEEccCCEEEEEECCCCCEeeeecCcCCC
Confidence 5699999999999999876432110000 011223455543 2477778889999999 599999987764 1
Q ss_pred ---cceeceeEEEeecCCCCeEEEEEeC------CCcEEEEec-CCCeeEEEccccc--c--------------------
Q 003012 508 ---AEIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSL--V-------------------- 555 (857)
Q Consensus 508 ---g~i~ss~~vaD~DGDG~~DLvv~~~------~G~l~~~~~-~G~~~W~~~~~~~--~-------------------- 555 (857)
..+.+.+++. +| -++++.. ++.+++|+. +|+.+|....... .
T Consensus 154 ~~~~~~~~sP~v~----~g--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 154 KRSYTITGAPRVV----NG--KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp TSCCBCCSCCEEE----TT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred CCCccccCCcEEE----CC--EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence 1234456554 23 2455542 578999996 8999999753110 0
Q ss_pred ----c----cCCEEEecCCCCcccEEEEecCC-------------------cEEEEECCCCCeecccccccCC----ccc
Q 003012 556 ----T----QGPSIGDVDGDGHSDVVVPTLSG-------------------NIYVLSGKDGSKVRPYPYRTHG----RVM 604 (857)
Q Consensus 556 ----~----~~vavgDlDGDG~~DLvv~t~~G-------------------~I~~l~~~~G~~~~~~~~~~~g----~~~ 604 (857)
. -.....| .++. -|++++.++ .+++++..+|+.+|.+...... ...
T Consensus 228 ~~~~~g~~~w~~~~~d--~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYD--PELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp HHHCEECCCCSCEEEE--TTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred eecCCCCccccceeEc--CCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 0 0012222 2221 255555554 3999999999999987653221 134
Q ss_pred cceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE
Q 003012 605 NQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV 645 (857)
Q Consensus 605 s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~ 645 (857)
.++.+.|+.-+ |....-|++++.+|.+|+++..+|...+
T Consensus 305 ~~~~l~d~~~~--G~~~~~v~~~~~~G~l~~lD~~tG~~l~ 343 (689)
T 1yiq_A 305 QHMILAELPID--GKPRKVLMQAPKNGFFYVIDRATGELLS 343 (689)
T ss_dssp SCEEEEEEEET--TEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCcEEEeeccC--CcEEEEEEEECCCCeEEEEECCCCCEec
Confidence 55677776421 1112357788889999999998887653
No 35
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.34 E-value=3.1e-05 Score=92.55 Aligned_cols=193 Identities=18% Similarity=0.220 Sum_probs=121.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCcccc--ccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeec--
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASF--RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM-- 507 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~--~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~-- 507 (857)
+.|+++|..+|+++|+............ ......++++.+ .-|++++.++.|++++ .+|+.+|.++...
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~ 149 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG------DKVYVGTLDGRLIALDAKTGKAIWSQQTTDPA 149 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEB------TEEEEECTTSEEEEEETTTCCEEEEEECSCTT
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEEC------CEEEEEcCCCEEEEEECCCCCEeeeeccCCCC
Confidence 6799999999999999876432110000 011123455543 2477778889999999 5999999887632
Q ss_pred --cceeceeEEEeecCCCCeEEEEEeC------CCcEEEEec-CCCeeEEEcccccccc---------------------
Q 003012 508 --AEIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSLVTQ--------------------- 557 (857)
Q Consensus 508 --g~i~ss~~vaD~DGDG~~DLvv~~~------~G~l~~~~~-~G~~~W~~~~~~~~~~--------------------- 557 (857)
..+.+.+++. +| -|+++.. ++.+++|+. +|+.+|+.........
T Consensus 150 ~~~~~~~~P~v~----~~--~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 150 KPYSITGAPRVV----KG--KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp SSCBCCSCCEEE----TT--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CcceecCCCEEE----CC--EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 1234455554 23 3555543 478999996 8999999764210000
Q ss_pred ---------CCEEEecCCCCcccEEEEecCC-------------------cEEEEECCCCCeecccccccCC----cccc
Q 003012 558 ---------GPSIGDVDGDGHSDVVVPTLSG-------------------NIYVLSGKDGSKVRPYPYRTHG----RVMN 605 (857)
Q Consensus 558 ---------~vavgDlDGDG~~DLvv~t~~G-------------------~I~~l~~~~G~~~~~~~~~~~g----~~~s 605 (857)
.....|- ++. -|++++.++ .|++++..+|+.+|.++..... ....
T Consensus 224 ~~~~gg~~w~~~a~d~--~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDP--ELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp HHCEECCCCSCEEEET--TTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeCCCCccccceEEcC--CCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 0112222 111 255555444 3999999999999987654221 1335
Q ss_pred ceEEEeccCCCCCCCC--eEEEEEecCCeEEEEcCCCCceE
Q 003012 606 QVLLVDLTKRGEKSKG--LTIVTTSFDGYLYLIDGPTSCAD 644 (857)
Q Consensus 606 ~~~v~DlDgDg~gDG~--~DLvv~s~dG~ly~~dg~~g~~~ 644 (857)
++.+.|+.- +|. .-|++++.+|.+|++|..+|...
T Consensus 301 ~~~~~d~~~----~G~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 301 QITLAELNI----DGKPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp CEEEEEEEE----TTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CcEEEEecc----CCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence 667777642 333 34788889999999999888765
No 36
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.29 E-value=2e-05 Score=94.35 Aligned_cols=194 Identities=17% Similarity=0.192 Sum_probs=123.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCcccc--ccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeee-c-
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASF--RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLE-M- 507 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~--~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~-~- 507 (857)
+.|+++|..+|+++|+............ ......++++.+ .-|++++.++.|++++ .+|+.+|.+... .
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~------~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~ 160 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK------GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQ 160 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEET------TEEEEECTTSEEEEEETTTCCEEEEEETTTTC
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEEC------CEEEEEcCCCEEEEEECCCCCEEeeecCCcCc
Confidence 5699999999999999976532211100 001223455532 2477788889999999 599999988764 1
Q ss_pred ---cceeceeEEEeecCCCCeEEEEEeC------CCcEEEEec-CCCeeEEEccccccc---------------------
Q 003012 508 ---AEIQGAVVAADINDDGKIELVTTDT------HGNVAAWTA-EGKGIWEQHLKSLVT--------------------- 556 (857)
Q Consensus 508 ---g~i~ss~~vaD~DGDG~~DLvv~~~------~G~l~~~~~-~G~~~W~~~~~~~~~--------------------- 556 (857)
..+.+.+++.+ | -|+++.. ++.+++|+. +|+.+|.........
T Consensus 161 ~~~~~~~~~p~v~~----~--~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 161 KGSLTITGAPRVFK----G--KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp CSSCBCCSCCEEET----T--EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CcCcccccCcEEEC----C--EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 12444555542 2 3555543 578999996 899999976432110
Q ss_pred -----c-----CCEEEecCCCCcccEEEEecCC-------------------cEEEEECCCCCeecccccccCC----cc
Q 003012 557 -----Q-----GPSIGDVDGDGHSDVVVPTLSG-------------------NIYVLSGKDGSKVRPYPYRTHG----RV 603 (857)
Q Consensus 557 -----~-----~vavgDlDGDG~~DLvv~t~~G-------------------~I~~l~~~~G~~~~~~~~~~~g----~~ 603 (857)
. .....|-+ +. -|++++.++ .+++++..+|+.+|.+...... ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~--~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAE--LN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp HHHHCEECCCCSCEEEETT--TT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred eeEeCCCcccccceeEcCC--CC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 0 11223332 21 255555442 4999999999999987654321 22
Q ss_pred ccceEEEeccCCCCCCCC--eEEEEEecCCeEEEEcCCCCceEE
Q 003012 604 MNQVLLVDLTKRGEKSKG--LTIVTTSFDGYLYLIDGPTSCADV 645 (857)
Q Consensus 604 ~s~~~v~DlDgDg~gDG~--~DLvv~s~dG~ly~~dg~~g~~~~ 645 (857)
.+.+.+.|..- ||. .-|++++.+|.+|++|..+|...|
T Consensus 312 ~~~p~l~~~~~----dG~~~~~l~~~~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 312 TQPMILADIKI----AGKPRKVILHAPKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp CSCCEEEEEEE----TTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCCcEEEeccc----CCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence 45566676632 343 457888889999999999887765
No 37
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.24 E-value=1.2e-06 Score=96.99 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=96.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEE-EeeCCeEEEEeC-CCceeeeeeeeccc-
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILV-GTSFGLFYVLDH-HGKIREKFPLEMAE- 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvV-g~~~G~Lyv~~~-dG~~~~~~~~~~g~- 509 (857)
+.|++||..+|+++|+.... ...++|++.+ | .+++ ++.+|.|++++. +|+.+|.++...+.
T Consensus 19 g~v~a~d~~tG~~~W~~~~~----------~~~s~p~~~~----g--~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 19 GSLHAVSKRTGSIKWTLKED----------PVLQVPTHVE----E--PAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp SEEEEEETTTCCEEEEEECC----------CSCCCC-----------CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred CEEEEEECCCCCEEEEecCC----------CceecceEcC----C--CEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 67999999999999998651 1234565543 2 2444 467889999995 89988877654321
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
....+++.+ +| -|+++..++.+++|+. +|+.+|...........+ ++ .-|++++.++.+++|+..+
T Consensus 83 ~~~sp~~~~---~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~~~~~p-------~~-~~v~~~~~dg~v~a~d~~t 149 (369)
T 2hz6_A 83 VQASPCRSS---DG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFADSLSP-------ST-SLLYLGRTEYTITMYDTKT 149 (369)
T ss_dssp HTTCSCC----------CCCCEEEEEEEEECCC------------------------------EEEEEEEEEEECCCSSS
T ss_pred cccCceEec---CC--EEEEEeCCCEEEEEECCCCcEEEEecCCCcccccc-------cC-CEEEEEecCCEEEEEECCC
Confidence 223343311 23 3566667788999986 799999876543211111 11 2477777889999999999
Q ss_pred CCeecccccccCCccccceEEE-eccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLV-DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV 646 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~-DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i 646 (857)
|+.+|.+.... . .++.+. |.. -...+++++.+|.+++++..+|...|.
T Consensus 150 G~~~W~~~~~~---~-~~~~~~~~~~------~~~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 150 RELRWNATYFD---Y-AASLPEDDVD------YKMSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp SSCCCEEEEEE---E-CCBCCCCCTT------CCCCEEEEETSCEEEEECTTTCCEEEE
T ss_pred CCEEEeEeccc---c-cCccccCCcc------ccceEEEECCCCEEEEEECCCCcEEEE
Confidence 99988765421 1 122211 110 012478888899999999988887774
No 38
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.20 E-value=0.0004 Score=73.48 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=111.4
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecccee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
.+.|++||.++|+++|+...... ..+.-+.+..||. +++ +.++.++.++.+|+.+|.+......
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~-----------~~~~~~~~~pdG~--ilv-s~~~~V~~~d~~G~~~W~~~~~~~~-- 77 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKG-----------WECNSVAATKAGE--ILF-SYSKGAKMITRDGRELWNIAAPAGC-- 77 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTT-----------CCCCEEEECTTSC--EEE-ECBSEEEEECTTSCEEEEEECCTTC--
T ss_pred CCEEEEEECCCCeEEEEeCCCcc-----------CCCcCeEECCCCC--EEE-eCCCCEEEECCCCCEEEEEcCCCCc--
Confidence 37799999999999999875310 0122233445664 666 4567899999999999988763211
Q ss_pred ceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCCeeEEEccccccc---cCCEEEecCCCCcccEEEE-ecCCcEEEEEC
Q 003012 512 GAVVAADINDDGKIELVTTDT-HGNVAAWTAEGKGIWEQHLKSLVT---QGPSIGDVDGDGHSDVVVP-TLSGNIYVLSG 586 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~~~W~~~~~~~~~---~~vavgDlDGDG~~DLvv~-t~~G~I~~l~~ 586 (857)
.+..+-+..||.. ++.... ++.+++++.+|+.+|+........ ..+....++.||. ++++ ..++.+++|+.
T Consensus 78 -~~~~~~~~~dG~~-lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~--~lv~~~~~~~v~~~d~ 153 (276)
T 3no2_A 78 -EMQTARILPDGNA-LVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN--YLVPLFATSEVREIAP 153 (276)
T ss_dssp -EEEEEEECTTSCE-EEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC--EEEEETTTTEEEEECT
T ss_pred -cccccEECCCCCE-EEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC--EEEEecCCCEEEEECC
Confidence 1223334567754 333333 678888999999999876432210 1111122344554 4444 45789999998
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV 646 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i 646 (857)
. |+.+|.+... +..... ...-+ | .-+++...++.+++++..+|...|.
T Consensus 154 ~-G~~~w~~~~~--~~~~~~--~~~~~------g-~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 154 N-GQLLNSVKLS--GTPFSS--AFLDN------G-DCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp T-SCEEEEEECS--SCCCEE--EECTT------S-CEEEECBTTSEEEEECTTTCCEEEE
T ss_pred C-CCEEEEEECC--CCccce--eEcCC------C-CEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 6 9999876543 211111 12222 1 2234444556899999887877774
No 39
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.98 E-value=8.9e-05 Score=81.64 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=101.2
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEE--eeCCeEEEEe-CCCceeeeeeeec
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVG--TSFGLFYVLD-HHGKIREKFPLEM 507 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg--~~~G~Lyv~~-~dG~~~~~~~~~~ 507 (857)
..|.|+++|.++|+++|+..... ...... ...+.. ..+| .+++. +.+|+||+++ .+|...|.+.+.
T Consensus 18 ~dG~l~Ald~~tG~~~W~~~~~~--~~p~~~---~~~~~~---~~~~--~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~- 86 (339)
T 2be1_A 18 VEGGLHAVDRRNGHIIWSIEPEN--FQPLIE---IQEPSR---LETY--ETLIIEPFGDGNIYYFNAHQGLQKLPLSIR- 86 (339)
T ss_dssp TTSCEEEEETTTTEEEEEECGGG--SCCSEE---CCCSCT---TTSS--EEEEECCSTTTEEEEEETTTEEEEEEEEHH-
T ss_pred CCCeEEEEECCCCcEEEEecCCc--cCCcEE---ecCCcc---ccCC--cEEEEEECCCCEEEEEECCCCcEEeeeccc-
Confidence 34889999999999999987640 000000 000111 0122 45555 4689999999 577655544433
Q ss_pred cceecee-------EEEee---cCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccc-------cCCEEEecCCCCc
Q 003012 508 AEIQGAV-------VAADI---NDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVT-------QGPSIGDVDGDGH 569 (857)
Q Consensus 508 g~i~ss~-------~vaD~---DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~-------~~vavgDlDGDG~ 569 (857)
..+..++ ++.|+ ..|| -+++++.+|++++++. +|+.+|+........ ..+...|++.|..
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g--~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~ 164 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDE--KVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQEC 164 (339)
T ss_dssp HHHTTCSEEEECC----------CCE--EEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred cceeccccccCCCceeecccccccCC--EEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccC
Confidence 1111222 22122 1222 5788889999999986 899999987654221 1233345532211
Q ss_pred -ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEecc-C-CCCCCCCeEEEEEecCCeEEEEcCCCCceEE
Q 003012 570 -SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLT-K-RGEKSKGLTIVTTSFDGYLYLIDGPTSCADV 645 (857)
Q Consensus 570 -~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlD-g-Dg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~ 645 (857)
.-|+++.....+.+.. .+|. .|...+......... .++- + ....|+.. +++..+|.+++++..+|...|
T Consensus 165 ~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~---~~~~~~~~~s~Dg~~--~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 165 ENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD---VPLALQNTFSKDGMC--IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT---HHHHTTCSSCSSSCC--EEEETTTEEEEECSTTCCEEE
T ss_pred CCeEEEecceEEEEEEC-CCCC-eEEEecccccccccc---cccccccccccCCcE--EEECCCCEEEEEECCCCcEEE
Confidence 1266655555555555 5786 666443211100000 0000 0 00012333 667889999999998888887
No 40
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.80 E-value=0.0095 Score=64.63 Aligned_cols=227 Identities=12% Similarity=0.050 Sum_probs=135.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|.+||..+++.......... ++ ...+..+.+..||. -|+.++.++.|.+++ .+|+.+..+... .
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~-------~H-~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h----~ 169 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKY-------EH-DDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAH----A 169 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEE-------CC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCC----S
T ss_pred CEEEEEeccCCCceeEeecccc-------CC-CCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCc----C
Confidence 6788999988875443322110 00 12345567788886 366777888999998 567655433322 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..||..-++.++.++.+.+|+. +++........ .....+....+..++..=++.++.+|.|.+|+..+++
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS-APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS 248 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc-eeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence 345566677777766788888999999986 55544332211 1111223344554443335667788999999988887
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
.+..+... ...+....+.. +|..-|+.++.++.+++++..++..... .+ ....+....|..||..=|+
T Consensus 249 ~~~~~~~h-----~~~v~~v~fsp----~g~~~lasgs~D~~i~vwd~~~~~~~~~-~~--H~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 249 CVLSSAVH-----SQCVTGLVFSP----HSVPFLASLSEDCSLAVLDSSLSELFRS-QA--HRDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp CCEEEECC-----SSCEEEEEECS----SSSCCEEEEETTSCEEEECTTCCEEEEE-CC--CSSCEEEEEECSSSTTEEE
T ss_pred EEEEEcCC-----CCCEEEEEEcc----CCCeEEEEEeCCCeEEEEECCCCcEEEE-cC--CCCCEEEEEEeCCCCeEEE
Confidence 66443221 12333344542 4445578889999999999877644322 11 1123444457777764344
Q ss_pred EEecCCcEEEEeCCC
Q 003012 671 VTTMNGNVFCFSTPA 685 (857)
Q Consensus 671 v~t~~G~V~~~~~~~ 685 (857)
.++.||.|.+|....
T Consensus 317 s~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 317 TVGWDHQVVHHVVPT 331 (344)
T ss_dssp EEETTSCEEEEECCC
T ss_pred EEcCCCeEEEEECCC
Confidence 568899999998754
No 41
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=97.77 E-value=0.0017 Score=68.54 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=90.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEE-ee-CCeEEEEeCCCceeeeeeeecc--
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVG-TS-FGLFYVLDHHGKIREKFPLEMA-- 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg-~~-~G~Lyv~~~dG~~~~~~~~~~g-- 508 (857)
+.++++|+ +|+++|+...... .. +..+-+..||. ++++ .. .++++.++.+|+.+|.+.+..+
T Consensus 56 ~~V~~~d~-~G~~~W~~~~~~~-------~~----~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 56 KGAKMITR-DGRELWNIAAPAG-------CE----MQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIE 121 (276)
T ss_dssp SEEEEECT-TSCEEEEEECCTT-------CE----EEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCS
T ss_pred CCEEEECC-CCCEEEEEcCCCC-------cc----ccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCC
Confidence 45899999 8999999875200 01 11223445664 4444 33 5689999999999998876532
Q ss_pred ceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECC
Q 003012 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGK 587 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~ 587 (857)
.....+..+.+..||.. |++...++.+++|+.+|+.+|+........ . .-+..+| .++++.. ++.+++++..
T Consensus 122 ~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~-~---~~~~~~g--~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 122 RPHAQFRQINKNKKGNY-LVPLFATSEVREIAPNGQLLNSVKLSGTPF-S---SAFLDNG--DCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp SGGGSCSCCEECTTSCE-EEEETTTTEEEEECTTSCEEEEEECSSCCC-E---EEECTTS--CEEEECBTTSEEEEECTT
T ss_pred cccccccCceECCCCCE-EEEecCCCEEEEECCCCCEEEEEECCCCcc-c---eeEcCCC--CEEEEeCCCCeEEEEeCc
Confidence 11111222234556642 334445789999999999999987642211 1 1222334 3555554 5689999998
Q ss_pred CCCeeccccc
Q 003012 588 DGSKVRPYPY 597 (857)
Q Consensus 588 ~G~~~~~~~~ 597 (857)
+|+.+|.+..
T Consensus 195 tG~~~w~~~~ 204 (276)
T 3no2_A 195 SNRIVRRVNA 204 (276)
T ss_dssp TCCEEEEEEG
T ss_pred CCcEEEEecC
Confidence 8999998763
No 42
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.71 E-value=4.4e-05 Score=84.27 Aligned_cols=184 Identities=13% Similarity=0.114 Sum_probs=99.8
Q ss_pred cEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccc--ccc
Q 003012 480 DILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLK--SLV 555 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~--~~~ 555 (857)
-|++++.+|.|++++ .+|+.+|.+.. +.+.+.+++.| |. -++++..++.+++|+. +|+.+|..... ...
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~----g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVE----EP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC---------C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcC----CC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 467778889999999 69999998876 44445555533 32 1333467899999987 89998876432 222
Q ss_pred ccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEE
Q 003012 556 TQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYL 635 (857)
Q Consensus 556 ~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~ 635 (857)
...+.+.+ ++ -|++++.++.+++++..+|+.+|.+..... ....+ + ...|++++.++.+++
T Consensus 84 ~~sp~~~~---~~--~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p-----~-------~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 84 QASPCRSS---DG--ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSP-----S-------TSLLYLGRTEYTITM 144 (369)
T ss_dssp TTCSCC----------CCCCEEEEEEEEECCC------------------------------------EEEEEEEEEEEC
T ss_pred ccCceEec---CC--EEEEEeCCCEEEEEECCCCcEEEEecCCCc--ccccc-----c-------CCEEEEEecCCEEEE
Confidence 23333311 22 256667788999999999999987654221 11111 1 134778888899999
Q ss_pred EcCCCCceEEEEeCCcceeeEEEEeecCCC--CccEEEEecCCcEEEEeCCCCCCCcccceec
Q 003012 636 IDGPTSCADVVDIGETSYSMVLADNVDGGD--DLDLIVTTMNGNVFCFSTPAPHHPLKAWRSI 696 (857)
Q Consensus 636 ~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG--~~DLvv~t~~G~V~~~~~~~~~~pl~~W~s~ 696 (857)
++..+|...|..... .++.+. +++|+ ..-+++++.+|.+++|+..+ ....|...
T Consensus 145 ~d~~tG~~~W~~~~~-~~~~~~---~~~~~~~~~~v~~~~~dg~v~a~d~~t---G~~~W~~~ 200 (369)
T 2hz6_A 145 YDTKTRELRWNATYF-DYAASL---PEDDVDYKMSHFVSNGDGLVVTVDSES---GDVLWIQN 200 (369)
T ss_dssp CCSSSSSCCCEEEEE-EECCBC---CCCCTTCCCCEEEEETSCEEEEECTTT---CCEEEEEE
T ss_pred EECCCCCEEEeEecc-cccCcc---ccCCccccceEEEECCCCEEEEEECCC---CcEEEEec
Confidence 998888766532111 122222 22332 12478889999999999753 33567654
No 43
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=97.67 E-value=0.07 Score=54.93 Aligned_cols=244 Identities=11% Similarity=0.163 Sum_probs=135.9
Q ss_pred cccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCcccccc
Q 003012 383 ILSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRA 462 (857)
Q Consensus 383 i~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~ 462 (857)
-+..|...-++.||. ++++... .+.|..|+.+ |+..+....... ..
T Consensus 28 ~~~~p~~v~~~~~g~--l~v~~~~-------------------------~~~i~~~d~~-g~~~~~~~~~~~------~~ 73 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND--IIVADTN-------------------------NHRIQIFDKE-GRFKFQFGECGK------RD 73 (286)
T ss_dssp CBSCEEEEEECTTCC--EEEEEGG-------------------------GTEEEEECTT-SCEEEEECCBSS------ST
T ss_pred ccCCCceEEECCCCC--EEEEECC-------------------------CCEEEEECCC-CcEEEEecccCC------Cc
Confidence 345676666777874 6665331 2568888887 555544321100 00
Q ss_pred ccccccEEEec-CCCCCccEEEEee--CCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeC-CCcEEE
Q 003012 463 YIYSSPTVVDL-DGDGNLDILVGTS--FGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDT-HGNVAA 538 (857)
Q Consensus 463 ~~~sspavaDl-DGDG~~DIvVg~~--~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~-~G~l~~ 538 (857)
.....|.-.-+ +.+| .++++.. ++.|+.++.+|+....+... . ...+...-++.||. +++++. ++.+++
T Consensus 74 ~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~~d~~g~~~~~~~~~--~-~~~~~~i~~~~~g~--l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIYNQYGQFVRKFGAT--I-LQHPRGVTVDNKGR--IIVVECKVMRVII 146 (286)
T ss_dssp TCBSSEEEEEEETTTT--EEEEEECGGGCEEEEECTTSCEEEEECTT--T-CSCEEEEEECTTSC--EEEEETTTTEEEE
T ss_pred ccccCceEEEEEcCCC--eEEEEcCCCCCEEEEECCCCcEEEEecCc--c-CCCceEEEEeCCCC--EEEEECCCCEEEE
Confidence 11123444444 3455 4677764 67899999888876544322 1 12344445677785 666654 577999
Q ss_pred EecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCC
Q 003012 539 WTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGE 617 (857)
Q Consensus 539 ~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~ 617 (857)
|+.+|+..+....... ...+.-.-++.||. ++++.. ++.|+.|+. +|+.+..+.. .+....+ .-.-++.
T Consensus 147 ~~~~g~~~~~~~~~~~-~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~--~g~~~~p-~~i~~d~--- 216 (286)
T 1q7f_A 147 FDQNGNVLHKFGCSKH-LEFPNGVVVNDKQE--IFISDNRAHCVKVFNY-EGQYLRQIGG--EGITNYP-IGVGINS--- 216 (286)
T ss_dssp ECTTSCEEEEEECTTT-CSSEEEEEECSSSE--EEEEEGGGTEEEEEET-TCCEEEEESC--TTTSCSE-EEEEECT---
T ss_pred EcCCCCEEEEeCCCCc-cCCcEEEEECCCCC--EEEEECCCCEEEEEcC-CCCEEEEEcc--CCccCCC-cEEEECC---
Confidence 9988876655432111 12233344667775 777754 678999986 5665543321 2212222 2222332
Q ss_pred CCCCeEEEEEec-CC-eEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 618 KSKGLTIVTTSF-DG-YLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 618 gDG~~DLvv~s~-dG-~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
+| .+++++. ++ .+++++..+.....+...... ..+...-++.||. |++++.++.|.+|+.
T Consensus 217 -~G--~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~~~~~i~~~~~g~--l~vs~~~~~v~v~~~ 278 (286)
T 1q7f_A 217 -NG--EILIADNHNNFNLTIFTQDGQLISALESKVKH-AQCFDVALMDDGS--VVLASKDYRLYIYRY 278 (286)
T ss_dssp -TC--CEEEEECSSSCEEEEECTTSCEEEEEEESSCC-SCEEEEEEETTTE--EEEEETTTEEEEEEC
T ss_pred -CC--CEEEEeCCCCEEEEEECCCCCEEEEEcccCCC-CcceeEEECCCCc--EEEECCCCeEEEEEc
Confidence 33 3666654 44 889998665554444333221 1233333677885 788888889999986
No 44
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.46 E-value=0.17 Score=54.10 Aligned_cols=216 Identities=16% Similarity=0.132 Sum_probs=128.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|.+||..+++..+..... ..+....+..||..=++.+..++.|++++. +|+........
T Consensus 54 ~~i~v~d~~~~~~~~~~~~~-------------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----- 115 (391)
T 1l0q_A 54 NDVSIIDTATNNVIATVPAG-------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----- 115 (391)
T ss_dssp TEEEEEETTTTEEEEEEECS-------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----
T ss_pred CeEEEEECCCCeEEEEEECC-------------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----
Confidence 67999999999887765432 134556677788643333445689999994 56554433321
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..||..=++.+..++.+++|+. +++........ ..+....+..||..=++.+..++.+++|+..+++
T Consensus 116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence 234455577888765566677889999986 55555443322 2234445667775422344567889999988776
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEe---cCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCC
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS---FDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDD 666 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s---~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~ 666 (857)
....... . ..+....++. +|. .|++++ .++.+++++..++.... +..+.. +....+..||+
T Consensus 192 ~~~~~~~--~----~~~~~~~~~~----~g~-~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~~~s~dg~ 256 (391)
T 1l0q_A 192 VIDTVKV--E----AAPSGIAVNP----EGT-KAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD----PAGIAVTPDGK 256 (391)
T ss_dssp EEEEEEC--S----SEEEEEEECT----TSS-EEEEEEECSSCCEEEEEETTTTEEEEEEECCSS----EEEEEECTTSS
T ss_pred EEEEEec--C----CCccceEECC----CCC-EEEEEecCcCCCcEEEEECCCCeEEEEEecCCC----ccEEEEccCCC
Confidence 6543321 1 1222233432 333 455555 57899999977664332 322221 33335778876
Q ss_pred ccEEEEecCCcEEEEeCCC
Q 003012 667 LDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 667 ~DLvv~t~~G~V~~~~~~~ 685 (857)
.=++.+..++.|++|+...
T Consensus 257 ~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 257 KVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEETTTTEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEECCC
Confidence 4234446789999999754
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.35 E-value=0.051 Score=58.80 Aligned_cols=201 Identities=9% Similarity=0.017 Sum_probs=119.4
Q ss_pred EEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeE
Q 003012 470 VVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIW 547 (857)
Q Consensus 470 vaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W 547 (857)
-+.+..|+ -+++++.+|.|.+++ .+|+...........-...+....+..||.. |+.++.++.+.+|+. +|+...
T Consensus 87 ~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-l~sgs~d~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 87 DLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-AVSGSKDICIKVWDLAQQVVLS 163 (344)
T ss_dssp EEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEEE
Confidence 34455665 478888899999988 4665443222211112234666778888864 777888999999986 555544
Q ss_pred EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEE
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT 627 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~ 627 (857)
.... ....+....+..|+..-++.++.++.|.+|+..+++....+.....+ ..+....+.. ++..-++++
T Consensus 164 ~~~~---h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~p----~~~~~l~sg 233 (344)
T 4gqb_B 164 SYRA---HAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG---YLPTSLAWHP----QQSEVFVFG 233 (344)
T ss_dssp EECC---CSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C---CCEEEEEECS----SCTTEEEEE
T ss_pred EEcC---cCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceee---ccceeeeecC----CCCcceEEe
Confidence 3321 12234455666676554666778999999998878765433222221 1223334432 233446778
Q ss_pred ecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 628 SFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 628 s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+.+|.+.+++..++.....-.+. ...+...-|..||..=|+.++.+|.|++|+...
T Consensus 234 ~~dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp ETTSEEEEEESCC--CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTC
T ss_pred ccCCcEEEEECCCCcEEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC
Confidence 89999999987665332211111 112333347777765577788999999998643
No 46
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.34 E-value=0.2 Score=53.67 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=131.9
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i 510 (857)
.+.|.+||..+++..+..... ..+....+..||..=++.+..++.|++++ .+|+.....+.. .
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~-------------~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~--~- 74 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVG-------------SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG--S- 74 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECS-------------SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS--S-
T ss_pred CCEEEEEECCCCeEEEEeecC-------------CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC--C-
Confidence 367999999999887665421 12455667888864344555688999999 477765544432 1
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
.+....+..||..=++.+..++.+.+|+. +++........ ..+....+..||..=++.+..++.+++|+..++
T Consensus 75 --~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 148 (391)
T 1l0q_A 75 --SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG----KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK 148 (391)
T ss_dssp --SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred --CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 45556677888754455556689999987 45444433321 223444567777543345556889999998878
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
+....+.. . ..+....+.. +|..-++.+..++.+++++..++.... +.... .+....++.||..
T Consensus 149 ~~~~~~~~--~----~~~~~~~~~~----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~~~~~g~~- 213 (391)
T 1l0q_A 149 AVINTVSV--G----RSPKGIAVTP----DGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA----APSGIAVNPEGTK- 213 (391)
T ss_dssp EEEEEEEC--C----SSEEEEEECT----TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS----EEEEEEECTTSSE-
T ss_pred cEEEEEec--C----CCcceEEECC----CCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC----CccceEECCCCCE-
Confidence 76544322 1 1223333432 344434556677899999977664433 22221 2233346777764
Q ss_pred EEEEe---cCCcEEEEeCCC
Q 003012 669 LIVTT---MNGNVFCFSTPA 685 (857)
Q Consensus 669 Lvv~t---~~G~V~~~~~~~ 685 (857)
|++++ .++.|++|+...
T Consensus 214 l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp EEEEEECSSCCEEEEEETTT
T ss_pred EEEEecCcCCCcEEEEECCC
Confidence 55555 688999999754
No 47
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.32 E-value=0.052 Score=58.68 Aligned_cols=226 Identities=10% Similarity=0.083 Sum_probs=125.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|..||..+++......+.. .. ....+....+..||. -|+.++.++.|.+++ .+++....+....
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~-------~~-h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~---- 181 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAK-------YE-HDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHS---- 181 (357)
T ss_dssp SCEEEC--------CCCCEEE-------CC-CSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCS----
T ss_pred CEEEEeeccccceeEEEeecc-------CC-CCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCC----
Confidence 557777777665422111100 00 012345567788885 366777888999998 4666554443321
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..++..-++.+..++.+.+|+. +++..-..... .....+....+..++..=|+.++.++.|.+|+..+++
T Consensus 182 ~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~ 260 (357)
T 4g56_B 182 SEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC-ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD 260 (357)
T ss_dssp SCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT-TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred CCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec-cccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence 234445566666666778888899999976 45443221111 1111233344555544446667788999999987776
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecC-CCCccE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDG-GDDLDL 669 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDG-DG~~DL 669 (857)
.+..+... ..++...-+.. ++..-|+.++.++.+++++..++..... .+.. ..+....|.- ||.. |
T Consensus 261 ~~~~~~~~-----~~~v~~l~~sp----~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~--~~V~~vafsP~d~~~-l 327 (357)
T 4g56_B 261 SAQTSAVH-----SQNITGLAYSY----HSSPFLASISEDCTVAVLDADFSEVFRD-LSHR--DFVTGVAWSPLDHSK-F 327 (357)
T ss_dssp GCEEECCC-----SSCEEEEEECS----SSSCCEEEEETTSCEEEECTTSCEEEEE-CCCS--SCEEEEEECSSSTTE-E
T ss_pred EeEEEecc-----ceeEEEEEEcC----CCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCC--CCEEEEEEeCCCCCE-E
Confidence 55433221 12333334432 3444577888999999999877644332 2211 2233444663 5553 6
Q ss_pred EEEecCCcEEEEeCCC
Q 003012 670 IVTTMNGNVFCFSTPA 685 (857)
Q Consensus 670 vv~t~~G~V~~~~~~~ 685 (857)
+.++.+|.|++|+..+
T Consensus 328 ~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEETTSCEEEEECC-
T ss_pred EEEcCCCeEEEEECCC
Confidence 6678999999999744
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.17 Score=54.03 Aligned_cols=227 Identities=17% Similarity=0.280 Sum_probs=129.0
Q ss_pred ceEEEEEC----CCCceEEEEeccCCCCccccccc-----cccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeee
Q 003012 433 GAIVVFNL----DTKQVKWTTDLDLSTDNASFRAY-----IYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKF 503 (857)
Q Consensus 433 G~v~a~d~----~tG~i~W~~~l~ls~~~~~~~~~-----~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~ 503 (857)
+.+.+|+. .+++..|........ ..++... ....+....+..||. -|++++.+|.|.+++.+|+....+
T Consensus 68 g~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~~~~~ 145 (425)
T 1r5m_A 68 SVARLARIVETDQEGKKYWKLTIIAEL-RHPFALSASSGKTTNQVTCLAWSHDGN-SIVTGVENGELRLWNKTGALLNVL 145 (425)
T ss_dssp TEEEEEEEEEC------CEEEEEEEEE-ECCCCCC------CBCEEEEEECTTSS-EEEEEETTSCEEEEETTSCEEEEE
T ss_pred ceEEEEEEecccCCccccccccccccc-cccccccccccCCCCceEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCeeeec
Confidence 66888888 888855543211000 0000010 122455667777775 466677788999999777765544
Q ss_pred eeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccccc---------------ccCCEEEecCCC
Q 003012 504 PLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV---------------TQGPSIGDVDGD 567 (857)
Q Consensus 504 ~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~---------------~~~vavgDlDGD 567 (857)
... ...+....+..||. -|++++.++.+.+|+. ++............ ...+.+. .+
T Consensus 146 ~~~----~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 217 (425)
T 1r5m_A 146 NFH----RAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV---DD 217 (425)
T ss_dssp CCC----CSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE---ET
T ss_pred cCC----CccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc---CC
Confidence 322 23355566677776 4677788899999987 56555443322211 2233333 23
Q ss_pred CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEE
Q 003012 568 GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVD 647 (857)
Q Consensus 568 G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~ 647 (857)
+. +++++.+|.+++|+..+++....+.. . ..++....+.. ++ .-|++++.+|.+++++...+.....-
T Consensus 218 ~~--~~~~~~~g~i~~~d~~~~~~~~~~~~--~---~~~i~~~~~~~----~~-~~l~~~~~d~~i~i~d~~~~~~~~~~ 285 (425)
T 1r5m_A 218 DK--FVIPGPKGAIFVYQITEKTPTGKLIG--H---HGPISVLEFND----TN-KLLLSASDDGTLRIWHGGNGNSQNCF 285 (425)
T ss_dssp TE--EEEECGGGCEEEEETTCSSCSEEECC--C---SSCEEEEEEET----TT-TEEEEEETTSCEEEECSSSBSCSEEE
T ss_pred CE--EEEEcCCCeEEEEEcCCCceeeeecc--C---CCceEEEEECC----CC-CEEEEEcCCCEEEEEECCCCccceEe
Confidence 33 78888899999999877765433221 1 12334444442 22 36778888999999986654332221
Q ss_pred eCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 648 IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 648 ~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.+. ...+....+..|| -|++++.+|.+++|+...
T Consensus 286 ~~~--~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 286 YGH--SQSIVSASWVGDD--KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp CCC--SSCEEEEEEETTT--EEEEEETTSEEEEEETTT
T ss_pred cCC--CccEEEEEECCCC--EEEEEeCCCcEEEEECCC
Confidence 111 1123344567777 677788999999999743
No 49
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.23 E-value=0.3 Score=51.88 Aligned_cols=222 Identities=13% Similarity=0.076 Sum_probs=129.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
|.|.+||..+++........ ........+..||. -|+.++.++.+.+++- .+..............
T Consensus 77 g~v~iWd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~ 143 (340)
T 1got_B 77 GKLIIWDSYTTNKVHAIPLR------------SSWVMTCAYAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143 (340)
T ss_dssp TEEEEEETTTCCEEEEEECS------------SSCEEEEEECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEEECCS
T ss_pred CcEEEEECCCCCcceEeecC------------CccEEEEEECCCCC-EEEEEeCCCeEEEEECccCCCcceeEEEecCCC
Confidence 67999998888765443321 11244566777775 4666777888888884 3321111111111111
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..++. ++.++.++.+.+|+. +|........ ....+....+..||. -++.++.++.+.+|+..++.
T Consensus 144 ~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 144 GYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTG---HTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM 217 (340)
T ss_dssp SCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS
T ss_pred ccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcC---CCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe
Confidence 2233444445554 888888999999986 5554433221 122344456666664 25666778999999987777
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
....+... ..++....+.. +| .-+++++.+|.+.+++-..+.....-........+....+..||.. |+
T Consensus 218 ~~~~~~~h-----~~~v~~v~~~p----~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~ 286 (340)
T 1got_B 218 CRQTFTGH-----ESDINAICFFP----NG-NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LL 286 (340)
T ss_dssp EEEEECCC-----SSCEEEEEECT----TS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSE-EE
T ss_pred eEEEEcCC-----cCCEEEEEEcC----CC-CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCE-EE
Confidence 65433211 12344444542 22 3578888999999998766543322111111122444457888864 77
Q ss_pred EEecCCcEEEEeCC
Q 003012 671 VTTMNGNVFCFSTP 684 (857)
Q Consensus 671 v~t~~G~V~~~~~~ 684 (857)
+++.+|.|.+|+..
T Consensus 287 ~g~~d~~i~vwd~~ 300 (340)
T 1got_B 287 AGYDDFNCNVWDAL 300 (340)
T ss_dssp EEETTSEEEEEETT
T ss_pred EECCCCeEEEEEcc
Confidence 77899999999964
No 50
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.002 Score=70.85 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=107.2
Q ss_pred cEEEEeeCCeEEEEe-CCCceeeeeeeec--cceece-eEEEeecCCCCeEEEEE--eCCCcEEEEec-CCCeeEEEccc
Q 003012 480 DILVGTSFGLFYVLD-HHGKIREKFPLEM--AEIQGA-VVAADINDDGKIELVTT--DTHGNVAAWTA-EGKGIWEQHLK 552 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~--g~i~ss-~~vaD~DGDG~~DLvv~--~~~G~l~~~~~-~G~~~W~~~~~ 552 (857)
-|++++.+|.||+++ .+|+.+|.+.... ..+... ... ..+| .+++. ..+|++++++. +|...|...+.
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~---~~~~--~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSR---LETY--ETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCT---TTSS--EEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCcc---ccCC--cEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 377888999999999 6999999876541 111100 000 0122 35554 46899999985 78777887766
Q ss_pred cccccCCEEEe-------c---CCCCcccEEEEecCCcEEEEECCCCCeecccccccCCc-c----ccceEEEeccCCCC
Q 003012 553 SLVTQGPSIGD-------V---DGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGR-V----MNQVLLVDLTKRGE 617 (857)
Q Consensus 553 ~~~~~~vavgD-------l---DGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~-~----~s~~~v~DlDgDg~ 617 (857)
..+..++..++ + ..|| -|++++.+|.+++++..+|+.+|.+....... + ...+.+.|++.|
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g--~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d-- 162 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDE--KVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQ-- 162 (339)
T ss_dssp HHHTTCSEEEECC----------CCE--EEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------
T ss_pred cceeccccccCCCceeecccccccCC--EEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccc--
Confidence 55544444431 1 1222 37788889999999999999999876543211 0 111223344211
Q ss_pred CCCCeEEEEEecCCeEEEEcCCCCceEEE-EeCCcceeeEEE-Ee------ecCCCCccEEEEecCCcEEEEeCCCCCCC
Q 003012 618 KSKGLTIVTTSFDGYLYLIDGPTSCADVV-DIGETSYSMVLA-DN------VDGGDDLDLIVTTMNGNVFCFSTPAPHHP 689 (857)
Q Consensus 618 gDG~~DLvv~s~dG~ly~~dg~~g~~~~i-~~g~~~~s~~~a-~D------lDGDG~~DLvv~t~~G~V~~~~~~~~~~p 689 (857)
+...-|+++..+..+++.+ ++|. .|. ..+ .+..... .+ +-.||.. ++++.+|.|++++..+ .
T Consensus 163 -~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s--~~~~~~~~~~~~~~~~~s~Dg~~--~~~~~dg~v~A~d~~~---G 232 (339)
T 2be1_A 163 -ECENMIVIGKTIFELGIHS-YDGA-SYNVTYS--TWQQNVLDVPLALQNTFSKDGMC--IAPFRDKSLLASDLDF---R 232 (339)
T ss_dssp ---CCEEEEEEEEEECEECC-TTSC-CCCCEEE--EEECCTTTHHHHTTCSSCSSSCC--EEEETTTEEEEECSTT---C
T ss_pred -cCCCeEEEecceEEEEEEC-CCCC-eEEEecc--cccccccccccccccccccCCcE--EEECCCCEEEEEECCC---C
Confidence 1123466666655566555 4453 342 111 0100000 00 1124554 6788999999999753 3
Q ss_pred cccc
Q 003012 690 LKAW 693 (857)
Q Consensus 690 l~~W 693 (857)
...|
T Consensus 233 ~~~W 236 (339)
T 2be1_A 233 IARW 236 (339)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 3457
No 51
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.22 E-value=0.032 Score=60.38 Aligned_cols=202 Identities=11% Similarity=0.010 Sum_probs=115.5
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCee
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGI 546 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~ 546 (857)
.-+.+..|| .+++++.+|.|.+++ .+|+...........-...+....+..||.. |+.++.++.+.+|+. +++..
T Consensus 98 ~~~~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~sgs~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 98 TDVAWVSEK--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ-AVSGGKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEETTT--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTTEEE
T ss_pred EEEEEcCCC--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCE-EEEEeCCCeEEEEECCCCcEE
Confidence 344455666 377788888888887 3554332211111112234666777888864 677888999999986 55555
Q ss_pred EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEE
Q 003012 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT 626 (857)
Q Consensus 547 W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv 626 (857)
...... ...+....+..++..-++.+..++.|.+|+..+++.......... ...+....+.. ++..-+++
T Consensus 175 ~~~~~h---~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~---~~~v~~v~~sp----~~~~~la~ 244 (357)
T 4g56_B 175 KSYNAH---SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS---DTIPTSVTWHP----EKDDTFAC 244 (357)
T ss_dssp EEECCC---SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC---CSCEEEEEECT----TSTTEEEE
T ss_pred EEEcCC---CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc---cccccchhhhh----cccceEEE
Confidence 443221 122333445556655577778899999998877765543322221 12233344432 33445777
Q ss_pred EecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 627 TSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 627 ~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
++.++.+++++-.++.....-.+.. ..+...-|..||..=|+.++.+|.|++|+...
T Consensus 245 g~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 245 GDETGNVSLVNIKNPDSAQTSAVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp EESSSCEEEEESSCGGGCEEECCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred eecccceeEEECCCCcEeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 8889999998876654332211111 11223346667755577788999999998743
No 52
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.20 E-value=0.32 Score=51.60 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=132.2
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i 510 (857)
.+.|..||..+++......... .......+..||. -|+.++.+|.+.+++ ..++........
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~------------~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~---- 163 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGP------------VDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTR---- 163 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCT------------TCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECS----
T ss_pred CCcEEEEECCCCCEEEEEeCCC------------ccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCC----
Confidence 3679999999888765543210 1122345667775 466677788999888 456544333222
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
...+....+..||.. |+.+..++.+.+|+. +|+....... ....+....+..||.. |+.++.++.|.+|+..++
T Consensus 164 ~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~~~~~~~~---h~~~v~~l~~spd~~~-l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 164 GKFILSIAYSPDGKY-LASGAIDGIINIFDIATGKLLHTLEG---HAMPIRSLTFSPDSQL-LVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECC---CSSCCCEEEECTTSCE-EEEECTTSCEEEEETTTC
T ss_pred CceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEcc---cCCceeEEEEcCCCCE-EEEEcCCCeEEEEECCCc
Confidence 123455667778864 677788899999986 5554433221 1122334456666652 666777899999998777
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccE
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDL 669 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DL 669 (857)
.....+.. -...+....+.. +| .-|+.++.++.+.+++-.++.....-.+. ...+....+..||.. |
T Consensus 239 ~~~~~~~~-----h~~~v~~~~~sp----~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~-l 305 (321)
T 3ow8_A 239 NLAGTLSG-----HASWVLNVAFCP----DD-THFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSK-I 305 (321)
T ss_dssp CEEEEECC-----CSSCEEEEEECT----TS-SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSE-E
T ss_pred ceeEEEcC-----CCCceEEEEECC----CC-CEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCE-E
Confidence 65433221 112344445542 23 35788889999999887665433221111 122444557888764 7
Q ss_pred EEEecCCcEEEEeC
Q 003012 670 IVTTMNGNVFCFST 683 (857)
Q Consensus 670 vv~t~~G~V~~~~~ 683 (857)
+.++.+|.|.+|+.
T Consensus 306 ~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 306 VSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTCCEEEEEC
T ss_pred EEEeCCCeEEEEeC
Confidence 77889999999985
No 53
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=97.19 E-value=0.22 Score=52.17 Aligned_cols=223 Identities=12% Similarity=0.132 Sum_probs=129.7
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEe-eCCeEEEEe-CCCceeeeeeeeccc
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT-SFGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~-~~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
.+.|+++|..+++..+...... .+.-..++.||.. ++++. .++.|++++ .+|+..+.++...+.
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~-------------~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 133 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDL-------------KPFGATINNTTQT-LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK 133 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESS-------------CCCSEEEETTTTE-EEEEETTTTEEEEEETTTCCEEEEEESCCCC
T ss_pred CccEEEEcCCCCeEEEEEecCC-------------CcceEEECCCCCE-EEEEecCCCEEEEEeCCCCeeEEEEecCCCc
Confidence 3679999999999888765421 1222335567764 55554 357899999 477776665543211
Q ss_pred e-----eceeEEEeecCCCCeEEEEEe--CCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcE
Q 003012 510 I-----QGAVVAADINDDGKIELVTTD--THGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNI 581 (857)
Q Consensus 510 i-----~ss~~vaD~DGDG~~DLvv~~--~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I 581 (857)
. ...+...-++.||.. ++++. .++.+++|+. +++..+...........++ ++.||.. +++++.++.+
T Consensus 134 ~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~s~dg~~-l~~~~~~~~i 208 (353)
T 3vgz_A 134 RTEEVRPLQPRELVADDATNT-VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA---LDSEGKR-LYTTNADGEL 208 (353)
T ss_dssp CCSSCCCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE---EETTTTE-EEEECTTSEE
T ss_pred cccccCCCCCceEEECCCCCE-EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE---ECCCCCE-EEEEcCCCeE
Confidence 0 012444556778875 55554 3577999986 5666555442222223333 3456653 7777788999
Q ss_pred EEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCceE-EEEeCCcceeeEEEE
Q 003012 582 YVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCAD-VVDIGETSYSMVLAD 659 (857)
Q Consensus 582 ~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~-~i~~g~~~~s~~~a~ 659 (857)
++|+..+|+..+.++....+.. ..+.-..++. ||.. +++++. ++.+++++..++... .+..+.. .. .
T Consensus 209 ~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~----dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~----~ 277 (353)
T 3vgz_A 209 ITIDTADNKILSRKKLLDDGKE-HFFINISLDT----ARQR-AFITDSKAAEVLVVDTRNGNILAKVAAPES-LA----V 277 (353)
T ss_dssp EEEETTTTEEEEEEECCCSSSC-CCEEEEEEET----TTTE-EEEEESSSSEEEEEETTTCCEEEEEECSSC-CC----E
T ss_pred EEEECCCCeEEEEEEcCCCCCC-cccceEEECC----CCCE-EEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ce----E
Confidence 9999988887765443222111 1122223332 3333 455554 489999998766543 3444332 11 2
Q ss_pred eecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 660 NVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 660 DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
.++.||+. ++++. .++.|.+|+..+
T Consensus 278 ~~s~dg~~-l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 278 LFNPARNE-AYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp EEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred EECCCCCE-EEEEECCCCeEEEEECCC
Confidence 36677764 66665 578899998743
No 54
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.15 E-value=0.25 Score=52.52 Aligned_cols=229 Identities=11% Similarity=0.065 Sum_probs=130.6
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
.+.+..|+..+++........ .. .....+.-...++ .-+++++.++.|++++. .++....+...
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~-~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---- 185 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFE---------ET-VYSHHMSPVSTKH-CLVAVGTRGPKVQLCDLKSGSCSHILQGH---- 185 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECS---------SC-EEEEEECSSCSSC-CEEEEEESSSSEEEEESSSSCCCEEECCC----
T ss_pred CCeEEEeeCCCCccceeccCC---------Cc-eeeeEeecCCCCC-cEEEEEcCCCeEEEEeCCCcceeeeecCC----
Confidence 367899999988876655432 10 0112222222233 24666777888999984 55544333222
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCee-EEEcc---------c---cccccCCEEEecCCCCcccEEEEe
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGI-WEQHL---------K---SLVTQGPSIGDVDGDGHSDVVVPT 576 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~-W~~~~---------~---~~~~~~vavgDlDGDG~~DLvv~t 576 (857)
...+....+..+|..-+++++.++.+.+|+. ++... ..... . ......+....+..||.. |++++
T Consensus 186 ~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~ 264 (408)
T 4a11_B 186 RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVG 264 (408)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEE
T ss_pred CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EEEec
Confidence 2345566677888766888888999999986 33322 11100 0 112234455567777643 67777
Q ss_pred cCCcEEEEECCCCCeecccccccCCccccce-EEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceee
Q 003012 577 LSGNIYVLSGKDGSKVRPYPYRTHGRVMNQV-LLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSM 655 (857)
Q Consensus 577 ~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~-~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~ 655 (857)
.+|.+.+|+..+++................. ..... +....++++..++.+++++-.++.....-.+. ...
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~ 336 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC------GCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH--YKT 336 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC------SSSSCEEEEEETTEEEEEETTTCCEEEEECCC--SSC
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEec------CCCceEEEEecCCEEEEEECcCCcceeeeccC--CCe
Confidence 8999999998877654322211111111111 11111 22345777788899999987765443321111 122
Q ss_pred EEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 656 VLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 656 ~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+....+..||.. |+.++.+|.|.+|+...
T Consensus 337 v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~ 365 (408)
T 4a11_B 337 VDCCVFQSNFQE-LYSGSRDCNILAWVPSL 365 (408)
T ss_dssp EEEEEEETTTTE-EEEEETTSCEEEEEECC
T ss_pred EEEEEEcCCCCE-EEEECCCCeEEEEeCCC
Confidence 344457777754 77788999999999754
No 55
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.01 E-value=0.34 Score=51.81 Aligned_cols=225 Identities=11% Similarity=0.091 Sum_probs=131.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceec
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQG 512 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~s 512 (857)
+.|..|+..+++........ . ....+....+..++..-|+.++.++.|.+++-.+.....+... .....
T Consensus 96 g~i~iwd~~~~~~~~~~~~~---------~-h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~ 164 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGM---------G-PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKT-DSWDY 164 (383)
T ss_dssp SCEEEEETTSTTCEEEECCC---------S-TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECC-CCSSC
T ss_pred CeEEEEeCCCcccceeeecC---------C-cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEecc-CCCCC
Confidence 66888998887765443221 0 0122344556554334577777889999999766544333222 11123
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC---
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG--- 589 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G--- 589 (857)
.+....+..||. -|++++.++.+.+|+.++........ ....+....++.+|..-++.++.++.+.+|+..++
T Consensus 165 ~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 240 (383)
T 3ei3_B 165 WYCCVDVSVSRQ-MLATGDSTGRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK 240 (383)
T ss_dssp CEEEEEEETTTT-EEEEEETTSEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred CeEEEEECCCCC-EEEEECCCCCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence 456667777776 57778888999999988776655432 12344556677777655777778999999987653
Q ss_pred -CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE-EEE-eCC------cc----e---
Q 003012 590 -SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVD-IGE------TS----Y--- 653 (857)
Q Consensus 590 -~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~-~i~-~g~------~~----~--- 653 (857)
..+..+ . ....+....++. .+| .-|++++.++.+++++-.++... .+. ... .. +
T Consensus 241 ~~~~~~~--~----~~~~v~~~~~s~---~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 310 (383)
T 3ei3_B 241 NSYIAEM--P----HEKPVNAAYFNP---TDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPM 310 (383)
T ss_dssp TCEEEEE--E----CSSCEEEEEECT---TTS-CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSS
T ss_pred cceEEEe--c----CCCceEEEEEcC---CCC-CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCC
Confidence 332211 1 123444445542 022 35778888999999986654322 111 000 00 0
Q ss_pred eeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 654 SMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 654 s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
....+.-+..||+. .++.+|.|++|+...
T Consensus 311 ~~~~~~~~s~dg~~---s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 311 YDLIVAGRYPDDQL---LLNDKRTIDIYDANS 339 (383)
T ss_dssp SSEEEEECBCCTTT---CTTCCCCEEEEETTT
T ss_pred CCceEEEecCCccc---ccCCCCeEEEEecCC
Confidence 11223346667766 666889999998743
No 56
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=97.01 E-value=0.48 Score=50.21 Aligned_cols=220 Identities=15% Similarity=0.123 Sum_probs=130.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.+.+|+..+++......+. +. .......++..++. -++.++.++.|.+++ .+|+....+.....
T Consensus 58 ~~v~vW~~~~~~~~~~~~l~---------gh-~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~--- 123 (321)
T 3ow8_A 58 DLVKVWKWRDERLDLQWSLE---------GH-QLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPV--- 123 (321)
T ss_dssp SCEEEEEEETTEEEEEEEEC---------CC-SSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTT---
T ss_pred CCEEEEECCCCCeeeeeeec---------cC-CCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEEeCCCc---
Confidence 55777776655433222221 11 12345567777774 355566788999998 46765544332211
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
.+....+..||. -|+++..++.+.+|+. ++...+..... ...+....+..||.. |+.++.++.|.+|+..+|+
T Consensus 124 -~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~---~~~v~~~~~spdg~~-lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 124 -DAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTR---GKFILSIAYSPDGKY-LASGAIDGIINIFDIATGK 197 (321)
T ss_dssp -CCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECS---SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTE
T ss_pred -cEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCC---CceEEEEEECCCCCE-EEEEcCCCeEEEEECCCCc
Confidence 222345667775 4677778899999986 56665554322 122344556777753 6777789999999988887
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
.+..+... ..++....+.. +| .-|++++.++.+.+++...+.....-.+.. ..+....+..||.. |+
T Consensus 198 ~~~~~~~h-----~~~v~~l~~sp----d~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~-l~ 264 (321)
T 3ow8_A 198 LLHTLEGH-----AMPIRSLTFSP----DS-QLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTH-FV 264 (321)
T ss_dssp EEEEECCC-----SSCCCEEEECT----TS-CEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSE-EE
T ss_pred EEEEEccc-----CCceeEEEEcC----CC-CEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEEEEECCCCCE-EE
Confidence 65433211 12233334442 22 357788889999998876654332211211 12334457778764 77
Q ss_pred EEecCCcEEEEeCCC
Q 003012 671 VTTMNGNVFCFSTPA 685 (857)
Q Consensus 671 v~t~~G~V~~~~~~~ 685 (857)
.++.+|.|.+|+...
T Consensus 265 s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGT 279 (321)
T ss_dssp EEETTSCEEEEETTT
T ss_pred EEeCCCcEEEEeCCC
Confidence 788999999999743
No 57
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.01 E-value=0.42 Score=49.57 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=128.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.+..|+..+++....... . ........+..||. -|+.++.++.|.+++ .+++....+... .
T Consensus 45 g~i~iw~~~~~~~~~~~~~-----------h-~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~----~ 107 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISG-----------H-KLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKCLKTLKGH----S 107 (312)
T ss_dssp SCEEEEETTTCCEEEEECC-----------C-SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECC----S
T ss_pred CeEEEEeCCCcccchhhcc-----------C-CCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcEEEEEcCC----C
Confidence 5688888877765433211 0 11244556777774 466677788999998 466654333222 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....++.+|. -|+.++.++.+.+|+. +++....... ....+....++.||. -++.++.++.+.+|+..+++
T Consensus 108 ~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~ 182 (312)
T 4ery_A 108 NYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPA---HSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ 182 (312)
T ss_dssp SCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECC---CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecC---CCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc
Confidence 2355566777775 3677788899999986 4554433221 122344456666765 36677789999999988776
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCc--ceeeEEEEeecCCCCcc
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGET--SYSMVLADNVDGGDDLD 668 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~--~~s~~~a~DlDGDG~~D 668 (857)
.+..+... ...++....++. +| .-|++++.+|.+.+++-..+.....-.+.. .+.... .+..++..-
T Consensus 183 ~~~~~~~~----~~~~~~~~~~~~----~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 251 (312)
T 4ery_A 183 CLKTLIDD----DNPPVSFVKFSP----NG-KYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA--NFSVTGGKW 251 (312)
T ss_dssp EEEEECCS----SCCCEEEEEECT----TS-SEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE--EEECSSSCE
T ss_pred eeeEEecc----CCCceEEEEECC----CC-CEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE--EEEeCCCcE
Confidence 55332111 112344445542 22 357788889999999877654433222211 111111 122222233
Q ss_pred EEEEecCCcEEEEeCCC
Q 003012 669 LIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~~~ 685 (857)
|+.++.+|.|++|+...
T Consensus 252 l~sg~~dg~i~vwd~~~ 268 (312)
T 4ery_A 252 IVSGSEDNLVYIWNLQT 268 (312)
T ss_dssp EEECCTTSCEEEEETTT
T ss_pred EEEECCCCEEEEEECCC
Confidence 66778899999999753
No 58
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.98 E-value=0.5 Score=53.39 Aligned_cols=190 Identities=13% Similarity=0.144 Sum_probs=117.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeE
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIW 547 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W 547 (857)
+.-..+..||.. |+.++.++.|.+++.+++........ ...+....+..|+.. |+.+..++.+.+|+.+++...
T Consensus 388 v~~~~~s~dg~~-l~~~~~d~~v~~~~~~~~~~~~~~~~----~~~v~~~~~s~d~~~-l~~~~~d~~v~~w~~~~~~~~ 461 (577)
T 2ymu_A 388 VRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQTLTGH----SSSVWGVAFSPDDQT-IASASDDKTVKLWNRNGQLLQ 461 (577)
T ss_dssp EEEEEECTTSSC-EEEEETTSEEEEECTTCCEEEEEECC----SSCEEEEEECTTSSE-EEEEETTSEEEEEETTSCEEE
T ss_pred eEEEEECCCCCE-EEEEeCCCEEEEEeCCCCEEEEecCC----CCCeEEEEECCCCCE-EEEEcCCCEEEEEECCCCEEE
Confidence 344567778864 67777888999999888765443322 123445567777764 677778899999998876554
Q ss_pred EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEE
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT 627 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~ 627 (857)
.... ....+....+..||.. |+.++.++.|.+|+. +|+.+..+... ..++....+.. ||. -|+++
T Consensus 462 ~~~~---~~~~v~~~~~spd~~~-las~~~d~~i~iw~~-~~~~~~~~~~h-----~~~v~~l~~s~----dg~-~l~s~ 526 (577)
T 2ymu_A 462 TLTG---HSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQTLTGH-----SSSVRGVAFSP----DGQ-TIASA 526 (577)
T ss_dssp EEEC---CSSCEEEEEECTTSCE-EEEEETTSEEEEEET-TSCEEEEEECC-----SSCEEEEEECT----TSS-CEEEE
T ss_pred EEcC---CCCCEEEEEEcCCCCE-EEEEeCCCEEEEEcC-CCCEEEEEeCC-----CCCEEEEEEcC----CCC-EEEEE
Confidence 3221 1223344556677753 666677899999984 67765443321 12333344542 333 47788
Q ss_pred ecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 628 SFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 628 s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
+.+|.+++++-.+.....+. +. ...+....|..||+. |+.++.+|.|.+|+
T Consensus 527 ~~dg~v~lwd~~~~~~~~~~-~h--~~~v~~~~fs~dg~~-l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 527 SDDKTVKLWNRNGQLLQTLT-GH--SSSVWGVAFSPDGQT-IASASSDKTVKLWN 577 (577)
T ss_dssp ETTSEEEEECTTSCEEEEEE-CC--SSCEEEEEECTTSSC-EEEEETTSCEEEEC
T ss_pred ECcCEEEEEeCCCCEEEEEc-CC--CCCEEEEEEcCCCCE-EEEEeCCCEEEEeC
Confidence 89999999985443333221 21 112333447788874 77778899999885
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.98 E-value=0.26 Score=53.15 Aligned_cols=222 Identities=14% Similarity=0.119 Sum_probs=130.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.+..|+..+++....... ....+....+..||. -|+.++.++.|.+++ .+++....+... .
T Consensus 119 g~i~iwd~~~~~~~~~~~~------------h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h----~ 181 (420)
T 3vl1_A 119 GDIKVLDSNFNLQREIDQA------------HVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGH----R 181 (420)
T ss_dssp SCEEEECTTSCEEEEETTS------------SSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECC----S
T ss_pred CCEEEEeCCCcceeeeccc------------ccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCC----C
Confidence 5688888887766433110 112345566777775 566777789999999 466654433322 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccccc---------------------ccCCEEEecCCCCc
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV---------------------TQGPSIGDVDGDGH 569 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~---------------------~~~vavgDlDGDG~ 569 (857)
..+....+..||. -|+.++.++.+.+|+. +++........... ...+....+..||.
T Consensus 182 ~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 182 ATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp SCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred CcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 2345555666775 4667788899999986 56555544321100 01111223455554
Q ss_pred ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce--EEEE
Q 003012 570 SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA--DVVD 647 (857)
Q Consensus 570 ~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~--~~i~ 647 (857)
-|++++.+|.+.+|+..+++....+... ...++....++. ++..-|++++.+|.+++++-.++.. ..+.
T Consensus 261 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~----~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 261 -YVIAGHVSGVITVHNVFSKEQTIQLPSK----FTCSCNSLTVDG----NNANYIYAGYENGMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEEEECCT----TSSCEEEEEECS----SCTTEEEEEETTSEEEEEETTCTTSCSEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCceeEEcccc----cCCCceeEEEeC----CCCCEEEEEeCCCeEEEEEcCCCcCchhhhh
Confidence 3667778899999998877765433221 123444455552 4444688899999999998776532 2332
Q ss_pred e-CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 648 I-GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 648 ~-g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
. .......+.. . ||. -|+.++.+|.+.+|+...+
T Consensus 332 ~~~~~~v~~~~~---~-~~~-~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGTPINNVYF---A-AGA-LFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTSCEEEEEE---E-TTE-EEEEETTTEEEEEEEECCT
T ss_pred ccCCCCceEEEe---C-CCC-EEEEecCCccEEEEeccCC
Confidence 2 1222222222 2 443 3666678999999997553
No 60
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.96 E-value=0.11 Score=56.14 Aligned_cols=203 Identities=14% Similarity=0.160 Sum_probs=120.0
Q ss_pred cCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEc
Q 003012 473 LDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH 550 (857)
Q Consensus 473 lDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~ 550 (857)
+..||.. |++++.+|.|.+++. .++....+. .....+....+..||. -|+.++.++.+.+|+. +++......
T Consensus 105 ~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~ 178 (420)
T 3vl1_A 105 AKLQMRR-FILGTTEGDIKVLDSNFNLQREIDQ----AHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLI 178 (420)
T ss_dssp ECSSSCE-EEEEETTSCEEEECTTSCEEEEETT----SSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEE
T ss_pred EecCCCE-EEEEECCCCEEEEeCCCcceeeecc----cccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEc
Confidence 4566653 777778889999984 444332211 1223455666777776 5777788899999986 555443322
Q ss_pred cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccC--Ccccc-----------------ceEEEe
Q 003012 551 LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH--GRVMN-----------------QVLLVD 611 (857)
Q Consensus 551 ~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~--g~~~s-----------------~~~v~D 611 (857)
. ....+....+..||. -|+.++.++.+.+|+..+++....+..... ..+.. ++....
T Consensus 179 ~---h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~ 254 (420)
T 3vl1_A 179 G---HRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLE 254 (420)
T ss_dssp C---CSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTC
T ss_pred C---CCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceE
Confidence 1 122334445555664 366777889999999888877654432111 11100 011111
Q ss_pred ccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCCCCCcc
Q 003012 612 LTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLK 691 (857)
Q Consensus 612 lDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~~~pl~ 691 (857)
+. ....-|++++.+|.+++++-.++.....-.. .....+....+..+|..-|++++.+|.|++|+......+..
T Consensus 255 ~s-----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 255 FG-----TYGKYVIAGHVSGVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp SS-----CTTEEEEEEETTSCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred Ec-----CCCCEEEEEcCCCeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 22 1224578888899999998776543332111 11123444457888876688889999999999865433333
No 61
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.19 Score=51.39 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=110.3
Q ss_pred cEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCC
Q 003012 480 DILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGP 559 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~v 559 (857)
-+++++.+|.+.+++ .++....+......+. .+.+... ++. -++++..++.+.+|+ .+........ .....+
T Consensus 116 ~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~-~~~~~~~--~~~-~l~~~~~d~~i~i~d-~~~~~~~~~~--~~~~~i 187 (313)
T 3odt_A 116 VVISGSWDKTAKVWK-EGSLVYNLQAHNASVW-DAKVVSF--SEN-KFLTASADKTIKLWQ-NDKVIKTFSG--IHNDVV 187 (313)
T ss_dssp EEEEEETTSEEEEEE-TTEEEEEEECCSSCEE-EEEEEET--TTT-EEEEEETTSCEEEEE-TTEEEEEECS--SCSSCE
T ss_pred EEEEEeCCCCEEEEc-CCcEEEecccCCCcee-EEEEccC--CCC-EEEEEECCCCEEEEe-cCceEEEEec--cCcccE
Confidence 466777788999988 5554443333212221 2222221 333 477788889999998 3333322221 122233
Q ss_pred EEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCC
Q 003012 560 SIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGP 639 (857)
Q Consensus 560 avgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~ 639 (857)
....+..+|. +++++.+|.+.+|+..+++.+..+... ..++....+.. +| .+++++.+|.+++++-.
T Consensus 188 ~~~~~~~~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~-----~~~i~~~~~~~----~~--~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 188 RHLAVVDDGH--FISCSNDGLIKLVDMHTGDVLRTYEGH-----ESFVYCIKLLP----NG--DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp EEEEEEETTE--EEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEEEECT----TS--CEEEEETTSEEEEECTT
T ss_pred EEEEEcCCCe--EEEccCCCeEEEEECCchhhhhhhhcC-----CceEEEEEEec----CC--CEEEEecCCEEEEEECC
Confidence 4445555666 888889999999998888776544321 12344445542 34 48899999999999977
Q ss_pred CCceEE-EEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 640 TSCADV-VDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 640 ~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
++.... +..... .+....+..||. +++++.+|.|++|+...
T Consensus 255 ~~~~~~~~~~~~~---~i~~~~~~~~~~--~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 255 NGSLKQVITLPAI---SIWSVDCMSNGD--IIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp TCCEEEEEECSSS---CEEEEEECTTSC--EEEEETTSCEEEEESCG
T ss_pred CCceeEEEeccCc---eEEEEEEccCCC--EEEEeCCCcEEEEeCCC
Confidence 665443 222221 233445778886 88899999999999743
No 62
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.53 Score=49.38 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=108.7
Q ss_pred cEEEecCCC--CCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCC--CCeEEEEEeCCCcEEEEecC
Q 003012 468 PTVVDLDGD--GNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDD--GKIELVTTDTHGNVAAWTAE 542 (857)
Q Consensus 468 pavaDlDGD--G~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGD--G~~DLvv~~~~G~l~~~~~~ 542 (857)
+....+..+ |. -|+.++.+|.|.+++- +++........ .....+....+..+ |. -++++..++.+.+|+..
T Consensus 58 v~~~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 58 VWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFK 133 (379)
T ss_dssp EEEEEECCGGGCS-EEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECC
T ss_pred EEEEEeCCCCCCC-EEEEeccCCEEEEEEcCCCceeEeeeec--CCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecC
Confidence 334455544 32 4566677888988884 55422111111 11233555566666 43 47777888999999863
Q ss_pred CC-eeEEEccccccccCCEEEecCC-------------CCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceE
Q 003012 543 GK-GIWEQHLKSLVTQGPSIGDVDG-------------DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVL 608 (857)
Q Consensus 543 G~-~~W~~~~~~~~~~~vavgDlDG-------------DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~ 608 (857)
.. ..-..... .....+....+.. |+. -+++++.++.|.+|+..++...+....... .-..++.
T Consensus 134 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~ 210 (379)
T 3jrp_A 134 ENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVR 210 (379)
T ss_dssp TTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTC-EEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEE
T ss_pred CCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCC-EEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEe
Confidence 32 11111110 1111222233333 333 366677789999998665543221111111 1123344
Q ss_pred EEeccCCCCCCC--CeEEEEEecCCeEEEEcCCCCce---EEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 609 LVDLTKRGEKSK--GLTIVTTSFDGYLYLIDGPTSCA---DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 609 v~DlDgDg~gDG--~~DLvv~s~dG~ly~~dg~~g~~---~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
...++. ++ ..-|++++.+|.+.+++-..+.. ............+....+..||.. |++++.+|.+++|+.
T Consensus 211 ~~~~sp----~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 211 DVAWSP----TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEECC----CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEESSSSEEEEEE
T ss_pred EEEECC----CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCE-EEEecCCCcEEEEeC
Confidence 455552 32 46688888899888877555421 111111112223445567888874 777788999999986
Q ss_pred C
Q 003012 684 P 684 (857)
Q Consensus 684 ~ 684 (857)
.
T Consensus 286 ~ 286 (379)
T 3jrp_A 286 N 286 (379)
T ss_dssp E
T ss_pred C
Confidence 4
No 63
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.92 E-value=0.48 Score=48.81 Aligned_cols=214 Identities=17% Similarity=0.186 Sum_probs=127.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.+..|+..+++......+... ........+..||. -+++++.+|.+++++. +++....+... .
T Consensus 119 ~~i~~~d~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~----~ 183 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAELTSS----------APACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGH----T 183 (337)
T ss_dssp SEEEEEECCCC--EEEEEEECS----------SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCC----S
T ss_pred CcEEEEECCCCCcceeeecccC----------CCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecc----c
Confidence 6688888888764333322110 12234556667764 4667777889999984 55544433322 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..||. -|+++..++.+.+|+. +++........ ..+....+..||. -+++++.++.++.|+..++.
T Consensus 184 ~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~~----~~v~~~~~s~~~~-~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 184 DGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDFT----SQIFSLGYCPTGE-WLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECS----SCEEEEEECTTSS-EEEEEETTSCEEEEETTSSC
T ss_pred CceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeecCC----CceEEEEECCCCC-EEEEEcCCCcEEEEECCCCC
Confidence 2355566777774 4677778899999986 45554443322 2234455666664 36677778999999987665
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
... ... ...++....+.. +|. -+++++.+|.+++++-.++......... ..+....+..||.. |+
T Consensus 258 ~~~---~~~---~~~~v~~~~~~~----~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~-l~ 322 (337)
T 1gxr_A 258 KYQ---LHL---HESCVLSLKFAY----CGK-WFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKY-IV 322 (337)
T ss_dssp EEE---ECC---CSSCEEEEEECT----TSS-EEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCE-EE
T ss_pred eEE---EcC---CccceeEEEECC----CCC-EEEEecCCCcEEEEECCCCeEEEEecCC---CcEEEEEECCCCCE-EE
Confidence 431 111 122344444542 233 4778888999999987766544321111 12333457777753 67
Q ss_pred EEecCCcEEEEe
Q 003012 671 VTTMNGNVFCFS 682 (857)
Q Consensus 671 v~t~~G~V~~~~ 682 (857)
+++.+|.+++|+
T Consensus 323 ~~~~dg~i~iw~ 334 (337)
T 1gxr_A 323 TGSGDKKATVYE 334 (337)
T ss_dssp EEETTSCEEEEE
T ss_pred EecCCCeEEEEE
Confidence 778899999887
No 64
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.21 Score=55.37 Aligned_cols=162 Identities=14% Similarity=0.163 Sum_probs=95.3
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEecC---CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTAE---GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~~---G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
.+....+..||..=+++++.++.+.+|+.. |...-.... ......+....+..||. -|++++.+|.++.|+..++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~ 181 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR-FCFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINSI 181 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-EECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTSC
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-ccCCCCceEEEEcCCCC-EEEEEeCCCcEEEEecCCc
Confidence 366778888987666778888999999754 433322111 11123345566777774 3677778899999987666
Q ss_pred Ceec-c-cccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE-EeCCcceeeEEEEeecCCCC
Q 003012 590 SKVR-P-YPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV-DIGETSYSMVLADNVDGGDD 666 (857)
Q Consensus 590 ~~~~-~-~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i-~~g~~~~s~~~a~DlDGDG~ 666 (857)
.... . ...... ...+....+..| .++..-|++++.++.+++++-.++..... ..+.. ..+....|. ||.
T Consensus 182 ~~~~~~~~~~~~h---~~~v~~~~~sp~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~--~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 182 PEEKFTQEPILGH---VSMLTDVHLIKD--SDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK--HFVSSICCG-KDY 253 (450)
T ss_dssp CCSSCCCCCSEEC---SSCEEEEEEEEC--TTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS--SCEEEEEEC-STT
T ss_pred ccccccceeeecc---cCceEEEEEcCC--CCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC--CceEEEEEC-CCC
Confidence 5432 0 011111 123333444421 01345678888899888888665543322 21221 123333466 665
Q ss_pred ccEEEEecCCcEEEEeCCC
Q 003012 667 LDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 667 ~DLvv~t~~G~V~~~~~~~ 685 (857)
. |+.++.+|.|.+|+...
T Consensus 254 ~-l~s~~~d~~v~vwd~~~ 271 (450)
T 2vdu_B 254 L-LLSAGGDDKIFAWDWKT 271 (450)
T ss_dssp E-EEEEESSSEEEEEETTT
T ss_pred E-EEEEeCCCeEEEEECCC
Confidence 4 67778999999999754
No 65
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.86 E-value=0.43 Score=52.45 Aligned_cols=210 Identities=17% Similarity=0.165 Sum_probs=122.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|.+||..+++..+..... ...+....+ ||. -|++++.+|.|.+++ .+|+....+... .
T Consensus 153 g~i~iwd~~~~~~~~~~~~h------------~~~v~~l~~--~~~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h----~ 213 (435)
T 1p22_A 153 NTIKIWDKNTLECKRILTGH------------TGSVLCLQY--DER-VIITGSSDSTVRVWDVNTGEMLNTLIHH----C 213 (435)
T ss_dssp SCEEEEESSSCCEEEEECCC------------SSCEEEEEC--CSS-EEEEEETTSCEEEEESSSCCEEEEECCC----C
T ss_pred CeEEEEeCCCCeEEEEEcCC------------CCcEEEEEE--CCC-EEEEEcCCCeEEEEECCCCcEEEEEcCC----C
Confidence 67999999988876654311 012333444 333 566777889999998 567655443322 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....++++ -++.++.++.+.+|+. ++...............+....++ |. -+++++.+|.+.+|+..+++
T Consensus 214 ~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~ 287 (435)
T 1p22_A 214 EAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWNTSTCE 287 (435)
T ss_dssp SCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTTCC
T ss_pred CcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCcCc
Confidence 23444455532 6788888999999986 343332211111112233333443 32 47777789999999988887
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
.+..+.... ..+....+++ .-+++++.+|.+.+++-.++.....-.+.. ..+....+ ||.. |+
T Consensus 288 ~~~~~~~~~-----~~v~~~~~~~-------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~--~~~~-l~ 350 (435)
T 1p22_A 288 FVRTLNGHK-----RGIACLQYRD-------RLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF--DNKR-IV 350 (435)
T ss_dssp EEEEEECCS-----SCEEEEEEET-------TEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC--CSSE-EE
T ss_pred EEEEEcCCC-----CcEEEEEeCC-------CEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe--cCCE-EE
Confidence 765443211 2233334432 357888899999999977654433211111 12233334 4443 77
Q ss_pred EEecCCcEEEEeCC
Q 003012 671 VTTMNGNVFCFSTP 684 (857)
Q Consensus 671 v~t~~G~V~~~~~~ 684 (857)
+++.+|.|.+|+..
T Consensus 351 sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 351 SGAYDGKIKVWDLV 364 (435)
T ss_dssp EEETTSCEEEEEHH
T ss_pred EEeCCCcEEEEECC
Confidence 88899999999963
No 66
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.83 E-value=0.035 Score=61.49 Aligned_cols=231 Identities=13% Similarity=0.107 Sum_probs=120.7
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecccee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
++.|.+||..++......... .........+++.||. -|++++.+|.|++++-+|+.+..+... .
T Consensus 186 D~~v~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~~~~~~~~h----~ 250 (435)
T 4e54_B 186 EGTTRLQDFKGNILRVFASSD----------TINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGKELWNLRMH----K 250 (435)
T ss_dssp SSCEEEEETTSCEEEEEECCS----------SCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSCBCCCSBCC----S
T ss_pred CCEEEEeeccCCceeEEeccC----------CCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcceeEEEecc----c
Confidence 466888888776543332211 0001123355667775 366677889999999777655433222 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....++.+|..-++.++.++.+.+|+. ++...-...........+....+..||.. |+.++.+|.|.+|+..++.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEEEESSSSS
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCe-eEEEcCCCEEEEEECCCCc
Confidence 235556677777777778888899999975 33221111111111223344556677753 6777789999999987776
Q ss_pred eecccccccCC--ccccc----------eEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEE
Q 003012 591 KVRPYPYRTHG--RVMNQ----------VLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLA 658 (857)
Q Consensus 591 ~~~~~~~~~~g--~~~s~----------~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a 658 (857)
........... ..... ..+.-.. .++..-++.+..++.+++++..++.....-.+........+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~ 405 (435)
T 4e54_B 330 CPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY----PDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSL 405 (435)
T ss_dssp SEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC----CCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCE
T ss_pred cceEEecccccccccceeEEEEEcCCCCEEEEEEc----CCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEE
Confidence 43221111100 00000 1111110 11222222222234677778776654432222111111222
Q ss_pred EeecCCCCccEEEEecCCcEEEEeCC
Q 003012 659 DNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 659 ~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
..|..||. ++++..++.|.+|+..
T Consensus 406 ~~fspdg~--~lasg~d~~i~iW~~~ 429 (435)
T 4e54_B 406 NEFNPMGD--TLASAMGYHILIWSQQ 429 (435)
T ss_dssp EEECTTSS--CEEEECSSEEEECCCC
T ss_pred EEECCCCC--EEEEEcCCcEEEEECC
Confidence 34677776 5666668899999864
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.83 E-value=0.25 Score=52.85 Aligned_cols=201 Identities=14% Similarity=0.064 Sum_probs=121.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI 546 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~ 546 (857)
+....+..||..-|+.++.+|.|.+++. +++........ .....+....+..++..-|+.++.++.+.+|+..+...
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 153 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM--GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI 153 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCC--STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecC--CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence 4455677787556777888899999985 45443333221 11233455556664445677788889999999876544
Q ss_pred EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEE
Q 003012 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT 626 (857)
Q Consensus 547 W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv 626 (857)
............+....+..||. -|+.++.++.+.+|+. +++.+..+.. . ...+....++. ++..-+++
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~-~~~~~~~~~~--h---~~~v~~~~~~~----~~~~~l~s 222 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGL-DGHEIFKEKL--H---KAKVTHAEFNP----RCDWLMAT 222 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEET-TSCEEEEEEC--S---SSCEEEEEECS----SCTTEEEE
T ss_pred EEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEEC-CCCEEEEecc--C---CCcEEEEEECC----CCCCEEEE
Confidence 33322222223445566666765 4677778899999997 4655433221 1 13444555653 34446788
Q ss_pred EecCCeEEEEcCCC----CceEEEEeCCcceeeEEEEeecC-CCCccEEEEecCCcEEEEeCCC
Q 003012 627 TSFDGYLYLIDGPT----SCADVVDIGETSYSMVLADNVDG-GDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 627 ~s~dG~ly~~dg~~----g~~~~i~~g~~~~s~~~a~DlDG-DG~~DLvv~t~~G~V~~~~~~~ 685 (857)
++.++.+.+++-.. +..... .+ ....+....+.. ||.. |++++.+|.+.+|+...
T Consensus 223 ~~~d~~i~iwd~~~~~~~~~~~~~-~~--~~~~v~~~~~s~~~~~~-l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 223 SSVDATVKLWDLRNIKDKNSYIAE-MP--HEKPVNAAYFNPTDSTK-LLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp EETTSEEEEEEGGGCCSTTCEEEE-EE--CSSCEEEEEECTTTSCE-EEEEESSSEEEEEETTB
T ss_pred EeCCCEEEEEeCCCCCcccceEEE-ec--CCCceEEEEEcCCCCCE-EEEEcCCCcEEEEECCC
Confidence 88999998887654 222111 11 112244445777 7754 77778899999999754
No 68
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.82 E-value=0.61 Score=48.61 Aligned_cols=223 Identities=13% Similarity=0.056 Sum_probs=128.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.+..||..+++........ ......+.+..||. -|+.++.++.|.+++ .+|+....+... .
T Consensus 35 g~v~lWd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~h----~ 97 (304)
T 2ynn_A 35 GRVELWNYETQVEVRSIQVT------------ETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAH----P 97 (304)
T ss_dssp SEEEEEETTTTEEEEEEECC------------SSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEECC----S
T ss_pred CcEEEEECCCCceeEEeecc------------CCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcEEEEEeCC----C
Confidence 67889999888765443321 01233444555654 367777889999998 567655444332 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..+|. -|+.++.++.+.+|+. ++...-. ... .....+....++.++..-++.++.++.|.+|+..++.
T Consensus 98 ~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~-~~~-~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~ 174 (304)
T 2ynn_A 98 DYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQ-TFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST 174 (304)
T ss_dssp SCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEE-EEC-CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred CcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhh-hhc-ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 2345556777775 4777888999999986 3322211 111 1122344455665333347777889999999976554
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
...... .. ....+...++... ....-|+.++.++.+.+++..++.....-.+.. ..+...-+..++. -|+
T Consensus 175 ~~~~~~--~~--~~~~v~~~~~~~~---~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~-~l~ 244 (304)
T 2ynn_A 175 PNFTLT--TG--QERGVNYVDYYPL---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLP-III 244 (304)
T ss_dssp CSEEEE--CC--CTTCEEEEEECCS---TTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSS-EEE
T ss_pred ccceec--cC--CcCcEEEEEEEEc---CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCC-EEE
Confidence 322111 11 1122333444311 122457888899999999877654332211211 1233334677765 366
Q ss_pred EEecCCcEEEEeCCC
Q 003012 671 VTTMNGNVFCFSTPA 685 (857)
Q Consensus 671 v~t~~G~V~~~~~~~ 685 (857)
.++.+|.|.+|+..+
T Consensus 245 s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 245 SGSEDGTLKIWNSST 259 (304)
T ss_dssp EEETTSCEEEEETTT
T ss_pred EEcCCCeEEEEECCC
Confidence 778999999999753
No 69
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.79 E-value=0.48 Score=52.03 Aligned_cols=211 Identities=18% Similarity=0.147 Sum_probs=123.5
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i 510 (857)
.|.|.+||..+++........ ........+++ . -+++++.+|.|.+++ .+++....+....+
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h------------~~~v~~~~~~~--~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-- 240 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGH------------TSTVRCMHLHE--K-RVVSGSRDATLRVWDIETGQCLHVLMGHVA-- 240 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCC------------SSCEEEEEEET--T-EEEEEETTSEEEEEESSSCCEEEEEECCSS--
T ss_pred CCeEEEEECCcCcEEEEECCC------------CCcEEEEEecC--C-EEEEEeCCCEEEEEECCCCcEEEEEcCCcc--
Confidence 367899999988776554311 01223333433 2 377788899999999 46765544432212
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
.+....+ ||. -+++++.++.+.+|+. +++........ ...+....+ ||. -+++++.++.+.+|+..++
T Consensus 241 --~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~ 309 (445)
T 2ovr_B 241 --AVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGH---TNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETG 309 (445)
T ss_dssp --CEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCC---SSCEEEEEE--CSS-EEEEEETTSCEEEEETTTC
T ss_pred --cEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCC---CCceEEEEE--CCC-EEEEEeCCCeEEEEECCCC
Confidence 2333444 343 3778888999999986 55555544321 112233334 333 3777788999999998888
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCC-cceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE-TSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~-~~~s~~~a~DlDGDG~~D 668 (857)
+.+..+... ...+....+++ .-+++++.+|.+.+++-.++.....-.+. .....+....++ + .-
T Consensus 310 ~~~~~~~~~-----~~~v~~~~~~~-------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~ 374 (445)
T 2ovr_B 310 NCIHTLTGH-----QSLTSGMELKD-------NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--K-NF 374 (445)
T ss_dssp CEEEEECCC-----CSCEEEEEEET-------TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--S-SE
T ss_pred CEEEEEcCC-----cccEEEEEEeC-------CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--C-CE
Confidence 776543221 11223333432 25788888999999987665443322221 112223333454 3 23
Q ss_pred EEEEecCCcEEEEeCCC
Q 003012 669 LIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~~~ 685 (857)
|++++.+|.|.+|+...
T Consensus 375 l~s~~~dg~v~iwd~~~ 391 (445)
T 2ovr_B 375 VITSSDDGTVKLWDLKT 391 (445)
T ss_dssp EEEEETTSEEEEEETTT
T ss_pred EEEEeCCCeEEEEECCC
Confidence 67778899999999754
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.3 Score=52.16 Aligned_cols=224 Identities=12% Similarity=0.119 Sum_probs=126.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCcc----cc--ccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNA----SF--RAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPL 505 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~----~~--~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~ 505 (857)
+.+..|+..+++.............. .. .........+. .++ -+++++.+|.|++++. .++....+..
T Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~ 245 (425)
T 1r5m_A 171 NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWV---DDD--KFVIPGPKGAIFVYQITEKTPTGKLIG 245 (425)
T ss_dssp CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEE---ETT--EEEEECGGGCEEEEETTCSSCSEEECC
T ss_pred CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEc---CCC--EEEEEcCCCeEEEEEcCCCceeeeecc
Confidence 56888888888776654432110000 00 00001223332 243 3778888889999984 5544433322
Q ss_pred eccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEE
Q 003012 506 EMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVL 584 (857)
Q Consensus 506 ~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l 584 (857)
. ...+....+..||. -|+++..++.+.+|+. ++........ ....+....+..|| -+++++.++.+.+|
T Consensus 246 ~----~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~--~l~~~~~d~~i~i~ 315 (425)
T 1r5m_A 246 H----HGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNSQNCFYG---HSQSIVSASWVGDD--KVISCSMDGSVRLW 315 (425)
T ss_dssp C----SSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBSCSEEECC---CSSCEEEEEEETTT--EEEEEETTSEEEEE
T ss_pred C----CCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCccceEecC---CCccEEEEEECCCC--EEEEEeCCCcEEEE
Confidence 1 22345556666776 5777778899999985 4554444321 12233445566677 57777789999999
Q ss_pred ECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc--------------------eE
Q 003012 585 SGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC--------------------AD 644 (857)
Q Consensus 585 ~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~--------------------~~ 644 (857)
+..+++.+..+... ..++....+.. +| .-|++++.+|.+++++-.++. ..
T Consensus 316 d~~~~~~~~~~~~~-----~~~i~~~~~s~----~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (425)
T 1r5m_A 316 SLKQNTLLALSIVD-----GVPIFAGRISQ----DG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLY 385 (425)
T ss_dssp ETTTTEEEEEEECT-----TCCEEEEEECT----TS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEE
T ss_pred ECCCCcEeEecccC-----CccEEEEEEcC----CC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhh
Confidence 98877765443221 12333444442 22 357778888988888765443 11
Q ss_pred EEEeCCccee-eEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 645 VVDIGETSYS-MVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 645 ~i~~g~~~~s-~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
. .+...... .+....+..||. -|++++.+|.|++|+.
T Consensus 386 ~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 386 A-SYQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAI 423 (425)
T ss_dssp E-EECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEEC
T ss_pred h-hhcCcccCCceEEEEccCCCc-eEEEEecCceEEEEee
Confidence 1 11111111 344445777876 3667888999999885
No 71
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.72 E-value=0.29 Score=52.23 Aligned_cols=208 Identities=13% Similarity=0.096 Sum_probs=119.3
Q ss_pred cEEEecC----CCCCccEEEEeeCCeEEEEeC-C------Cceee-----eeee--ec-cceeceeEEEeecCCCCeEEE
Q 003012 468 PTVVDLD----GDGNLDILVGTSFGLFYVLDH-H------GKIRE-----KFPL--EM-AEIQGAVVAADINDDGKIELV 528 (857)
Q Consensus 468 pavaDlD----GDG~~DIvVg~~~G~Lyv~~~-d------G~~~~-----~~~~--~~-g~i~ss~~vaD~DGDG~~DLv 528 (857)
+....+. .||..-+++++.+|.|++++. . ++... .+.. .. ......+....+..+| -++
T Consensus 124 v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~ 201 (397)
T 1sq9_A 124 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIA 201 (397)
T ss_dssp EEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEE
T ss_pred EEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEE
Confidence 4455566 677544777788898888883 3 33332 1111 00 0112335566778888 778
Q ss_pred EEeCCCcEEEEec-CCCeeEEEcccccc---ccCCEEEecCCCCcccEEEEecC---CcEEEEECCCCCeecccccccCC
Q 003012 529 TTDTHGNVAAWTA-EGKGIWEQHLKSLV---TQGPSIGDVDGDGHSDVVVPTLS---GNIYVLSGKDGSKVRPYPYRTHG 601 (857)
Q Consensus 529 v~~~~G~l~~~~~-~G~~~W~~~~~~~~---~~~vavgDlDGDG~~DLvv~t~~---G~I~~l~~~~G~~~~~~~~~~~g 601 (857)
++..++.+.+|+. ++............ ...+....+..||.. |++++.+ +.|.+|+..+++.+..+......
T Consensus 202 ~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~-l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 202 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL-LAIAHDSNSFGCITLYETEFGERIGSLSVPTHS 280 (397)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE-EEEEEEETTEEEEEEEETTTCCEEEEECBC---
T ss_pred EEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE-EEEEecCCCCceEEEEECCCCcccceeccCccc
Confidence 8888899999986 56555544330001 233455566666643 6666677 89999998888766544321000
Q ss_pred --------ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEe-----CC-------c------cee
Q 003012 602 --------RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDI-----GE-------T------SYS 654 (857)
Q Consensus 602 --------~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~-----g~-------~------~~s 654 (857)
.....+....+.. +| .-|++++.+|.+++++-.++.... +.. +. . ...
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~----~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFND----SG-ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp -----CCBSBSSCEEEEEECS----SS-SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred ccccccccccCCcEEEEEECC----CC-CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC
Confidence 0123344445542 22 357888889999999977664433 321 11 0 022
Q ss_pred eEEEEeecCCCC---------ccEEEEecCCcEEEEeC
Q 003012 655 MVLADNVDGGDD---------LDLIVTTMNGNVFCFST 683 (857)
Q Consensus 655 ~~~a~DlDGDG~---------~DLvv~t~~G~V~~~~~ 683 (857)
.+....+..||. .-|+.++.+|.|.+|+.
T Consensus 356 ~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 356 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred ceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 344445778873 34666788999999985
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=96.71 E-value=0.53 Score=49.12 Aligned_cols=145 Identities=9% Similarity=0.010 Sum_probs=80.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCC---ccEEEEeeCCeEEEEe-CCCceeeeeeeecc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGN---LDILVGTSFGLFYVLD-HHGKIREKFPLEMA 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~---~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g 508 (857)
+.|..|+..+++.......... ...........+..++. .-|++++.+|.|.+++ .+++....+...
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-- 114 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVD-------ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH-- 114 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEEC-------SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC--
T ss_pred CEEEEEEcCCCcEEEeeeeccc-------cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC--
Confidence 4577888776655433221000 00001233334444432 2466777888999999 466655444322
Q ss_pred ceeceeEEEeecC-CCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 509 EIQGAVVAADIND-DGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 509 ~i~ss~~vaD~DG-DG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
...+....+.. +| .-|+.++.++.+.+|+. +++..............+....+..||. -|+.++.+|.+.+|+.
T Consensus 115 --~~~i~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~ 190 (366)
T 3k26_A 115 --GNAINELKFHPRDP-NLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRI 190 (366)
T ss_dssp --CSCEEEEEECSSCT-TEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEES
T ss_pred --CCcEEEEEECCCCC-CEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEEC
Confidence 23455566666 44 35777888999999986 4554444321112223344455666664 2566667788888876
Q ss_pred CCCC
Q 003012 587 KDGS 590 (857)
Q Consensus 587 ~~G~ 590 (857)
.+++
T Consensus 191 ~~~~ 194 (366)
T 3k26_A 191 NSKR 194 (366)
T ss_dssp CSHH
T ss_pred CCCc
Confidence 6554
No 73
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=96.65 E-value=1.1 Score=50.57 Aligned_cols=192 Identities=12% Similarity=0.108 Sum_probs=117.5
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeE
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIW 547 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W 547 (857)
+....+..||. -|+.+..++.+.+++.+++........ ...+....+..||.. |+.+..++.+.+|+.+|+...
T Consensus 347 v~~~~~s~~g~-~l~~~~~dg~v~~~~~~~~~~~~~~~~----~~~v~~~~~s~dg~~-l~~~~~d~~v~~~~~~~~~~~ 420 (577)
T 2ymu_A 347 VWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGH----SSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQLLQ 420 (577)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEETTCCEEEEEECC----SSCEEEEEECTTSSC-EEEEETTSEEEEECTTCCEEE
T ss_pred EEEEEECCCCC-EEEEEeCCCEEEEEcCCCCEEEEecCC----CCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCEEE
Confidence 34456777876 366677788899999888765443322 123445556778864 667778899999998776654
Q ss_pred EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEE
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT 627 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~ 627 (857)
.... ....+....+..|+.. |+.+..++.+.+|+. +++.+..+... ..++....+.. || .-|+++
T Consensus 421 ~~~~---~~~~v~~~~~s~d~~~-l~~~~~d~~v~~w~~-~~~~~~~~~~~-----~~~v~~~~~sp----d~-~~las~ 485 (577)
T 2ymu_A 421 TLTG---HSSSVWGVAFSPDDQT-IASASDDKTVKLWNR-NGQLLQTLTGH-----SSSVRGVAFSP----DG-QTIASA 485 (577)
T ss_dssp EEEC---CSSCEEEEEECTTSSE-EEEEETTSEEEEEET-TSCEEEEEECC-----SSCEEEEEECT----TS-CEEEEE
T ss_pred EecC---CCCCeEEEEECCCCCE-EEEEcCCCEEEEEEC-CCCEEEEEcCC-----CCCEEEEEEcC----CC-CEEEEE
Confidence 3221 1122333456666653 666777889999985 56554332211 12334444542 23 347778
Q ss_pred ecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 628 SFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 628 s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
+.++.+.+++..+.....+.--. ..+....|..||+. |+.++.+|.|.+|+..
T Consensus 486 ~~d~~i~iw~~~~~~~~~~~~h~---~~v~~l~~s~dg~~-l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 486 SDDKTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQT-IASASDDKTVKLWNRN 538 (577)
T ss_dssp ETTSEEEEEETTSCEEEEEECCS---SCEEEEEECTTSSC-EEEEETTSEEEEECTT
T ss_pred eCCCEEEEEcCCCCEEEEEeCCC---CCEEEEEEcCCCCE-EEEEECcCEEEEEeCC
Confidence 88999888885544333332111 12333447788875 7778899999999853
No 74
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.64 E-value=0.94 Score=49.03 Aligned_cols=215 Identities=16% Similarity=0.095 Sum_probs=123.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.+.+|+.++++..+..... ...+....++.||..=++.+..++.|++++. +|+....++..
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----- 253 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLT------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI----- 253 (433)
T ss_dssp TEEEEEETTTCCEEEEEECS------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-----
T ss_pred CEEEEEECCCceEEEEEcCC------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-----
Confidence 67999999988887665421 1234556677787643333446789999994 66654433321
Q ss_pred ceeEEEeecCCCCeEEEEEe--------CCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEE
Q 003012 512 GAVVAADINDDGKIELVTTD--------THGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIY 582 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~--------~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~ 582 (857)
..+....++.||.. |+++. .++.+++|+. +|+......... .+.-..++.||..=++.+..++.++
T Consensus 254 ~~~~~~~~~~~g~~-l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 254 GLPRGLLLSKDGKE-LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG----NKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp SEEEEEEECTTSSE-EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE----CEEEEEECSSTTEEEEEETTTTEEE
T ss_pred CCceEEEEcCCCCE-EEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC----CcceEEECCCCCEEEEEecCCCEEE
Confidence 23556667778864 44443 3568889986 454444322111 2233445666654334446788999
Q ss_pred EEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec---------------CCeEEEEcCCCCceEEEE
Q 003012 583 VLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF---------------DGYLYLIDGPTSCADVVD 647 (857)
Q Consensus 583 ~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~---------------dG~ly~~dg~~g~~~~i~ 647 (857)
+|+..+++....++. . ..+....+.. +|. -+++++. +|.+++++..++.....-
T Consensus 329 v~d~~~~~~~~~~~~--~----~~~~~~~~s~----dg~-~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 329 VYDLKEKKVQKSIPV--F----DKPNTIALSP----DGK-YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EEETTTTEEEEEEEC--S----SSEEEEEECT----TSS-EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EEECCCCcEEEEecC--C----CCCCeEEEcC----CCC-EEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 999887776654331 1 1222333432 232 3445444 468999998766544321
Q ss_pred eCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCC
Q 003012 648 IGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTP 684 (857)
Q Consensus 648 ~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~ 684 (857)
.... .+....+..||.. |++++ .++.+++|+..
T Consensus 398 ~~~~---~~~~~~~s~dg~~-l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 EAGN---QPTGLDVSPDNRY-LVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECSS---SEEEEEECTTSCE-EEEEETTTTEEEEEEET
T ss_pred cCCC---CCceEEEcCCCCE-EEEEECCCCeEEEEEec
Confidence 1111 2333446777764 55555 48999998853
No 75
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.61 E-value=0.79 Score=47.79 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=108.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee--CCeEEEEeC-CCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS--FGLFYVLDH-HGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~--~G~Lyv~~~-dG~~~~~~~~~~g~ 509 (857)
+.|.++|..+++..+............. ....+.-..++.||.. ++++.. ++.|++++. +++..+.++.. +.
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~-l~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~ 185 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEV---RPLQPRELVADDATNT-VYISGIGKESVIWVVDGGNIKLKTAIQNT-GK 185 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSC---CCCEEEEEEEETTTTE-EEEEEESSSCEEEEEETTTTEEEEEECCC-CT
T ss_pred CEEEEEeCCCCeeEEEEecCCCcccccc---CCCCCceEEECCCCCE-EEEEecCCCceEEEEcCCCCceEEEecCC-CC
Confidence 5699999999998887665311110000 0011334556778764 555552 567999994 66665554422 22
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccc-cccCCEEEecCCCCcccEEEEec-CCcEEEEEC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL-VTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSG 586 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~-~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~ 586 (857)
. +....++.||.. +++++.++.+++|+. +|+..+....... ....+.-..++.||.. ++++.. ++.+++|+.
T Consensus 186 ~---~~~~~~s~dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~ 260 (353)
T 3vgz_A 186 M---STGLALDSEGKR-LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQR-AFITDSKAAEVLVVDT 260 (353)
T ss_dssp T---CCCCEEETTTTE-EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTE-EEEEESSSSEEEEEET
T ss_pred c---cceEEECCCCCE-EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCE-EEEEeCCCCEEEEEEC
Confidence 1 222334567764 777777889999986 6666666544221 1222233456666653 555554 589999999
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe-cCCeEEEEcCCCCceE
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS-FDGYLYLIDGPTSCAD 644 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s-~dG~ly~~dg~~g~~~ 644 (857)
.+|+.+...+.... ..+ .++ .||.. +++++ .++.+++++..++...
T Consensus 261 ~~~~~~~~~~~~~~----~~~---~~s----~dg~~-l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 261 RNGNILAKVAAPES----LAV---LFN----PARNE-AYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp TTCCEEEEEECSSC----CCE---EEE----TTTTE-EEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcEEEEEEcCCC----ceE---EEC----CCCCE-EEEEECCCCeEEEEECCCCeEE
Confidence 88887655443211 112 222 23443 55555 5788999987766443
No 76
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.60 E-value=0.66 Score=50.94 Aligned_cols=214 Identities=16% Similarity=0.132 Sum_probs=125.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.+..||..+++..+..... ........+ ||. -+++++.+|.|.+++ .+++....+....
T Consensus 219 g~i~~wd~~~~~~~~~~~~~------------~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---- 279 (445)
T 2ovr_B 219 ATLRVWDIETGQCLHVLMGH------------VAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETETCLHTLQGHT---- 279 (445)
T ss_dssp SEEEEEESSSCCEEEEEECC------------SSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTEEEEEECCCS----
T ss_pred CEEEEEECCCCcEEEEEcCC------------cccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCcEeEEecCCC----
Confidence 67899999888876654321 012233344 343 477788889999998 4566554443221
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+ ||. -+++++.++.+.+|+. +++.......... .+....+++ . -++.++.+|.+.+|+..+|+
T Consensus 280 ~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~v~~~~~~~--~-~l~~~~~dg~i~vwd~~~~~ 350 (445)
T 2ovr_B 280 NRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGNCIHTLTGHQS---LTSGMELKD--N-ILVSGNADSTVKIWDIKTGQ 350 (445)
T ss_dssp SCEEEEEE--CSS-EEEEEETTSCEEEEETTTCCEEEEECCCCS---CEEEEEEET--T-EEEEEETTSCEEEEETTTCC
T ss_pred CceEEEEE--CCC-EEEEEeCCCeEEEEECCCCCEEEEEcCCcc---cEEEEEEeC--C-EEEEEeCCCeEEEEECCCCc
Confidence 22333444 443 4788888999999986 6666655432111 112223332 2 36667789999999988887
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EE-eC-CcceeeEEEEeecCCCCc
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VD-IG-ETSYSMVLADNVDGGDDL 667 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~-~g-~~~~s~~~a~DlDGDG~~ 667 (857)
.+..+.... ....++....+++ .-+++++.+|.+.+++-.++.... +. .. ......+....+..||.
T Consensus 351 ~~~~~~~~~--~~~~~v~~~~~~~-------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~- 420 (445)
T 2ovr_B 351 CLQTLQGPN--KHQSAVTCLQFNK-------NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL- 420 (445)
T ss_dssp EEEEECSTT--SCSSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE-
T ss_pred EEEEEccCC--CCCCCEEEEEECC-------CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE-
Confidence 765433211 1223344444542 357888899999999977665433 21 11 11222344455777764
Q ss_pred cEEEEecCCc----EEEEeCC
Q 003012 668 DLIVTTMNGN----VFCFSTP 684 (857)
Q Consensus 668 DLvv~t~~G~----V~~~~~~ 684 (857)
-+++++.+|. +++|+-.
T Consensus 421 ~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECC
T ss_pred EEEEcccCCCCccEEEEEECC
Confidence 3566677786 8888754
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.64 Score=48.41 Aligned_cols=200 Identities=13% Similarity=0.095 Sum_probs=115.3
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
+....+..||. -|++++.+|.|.+++ .+++....+... ...+....+..||. -|+.++.++.+.+|+. +++.
T Consensus 35 v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~ 108 (369)
T 3zwl_B 35 LTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGTLDGH----TGTIWSIDVDCFTK-YCVTGSADYSIKLWDVSNGQC 108 (369)
T ss_dssp EEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEEECCC----SSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCE
T ss_pred EEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhhhhhc----CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE
Confidence 44556777775 366677788999998 567655444322 22355566777775 4667778899999986 5666
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecC-----CcEEEEECCCCCeecccccccCCc--------cccceEEEec
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLS-----GNIYVLSGKDGSKVRPYPYRTHGR--------VMNQVLLVDL 612 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~-----G~I~~l~~~~G~~~~~~~~~~~g~--------~~s~~~v~Dl 612 (857)
...... ...+....+..||.. ++++..+ +.+.+|+...+.....+....... ....+....+
T Consensus 109 ~~~~~~----~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 109 VATWKS----PVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp EEEEEC----SSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred EEEeec----CCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 555432 223344556666653 5555555 888888765444322111111100 0013344444
Q ss_pred cCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 613 TKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 613 DgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.. + ..-+++++.+|.+++++..........+.. ....+....+..||.. |++++.+|.|.+|+...
T Consensus 184 ~~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 184 ST----K-GKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTY-FITSSRDTNSFLVDVST 249 (369)
T ss_dssp CG----G-GCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred cC----C-CCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCE-EEEecCCceEEEEECCC
Confidence 32 1 235778888999999987763222211111 1112334457777753 77778899999999754
No 78
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.56 E-value=0.92 Score=47.58 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=124.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|..|+..+++..-...+. . ....+....+..||. -|+.++.+|.|.+++- +++........ ...
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~---------~-h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~ 96 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELK---------E-HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVIL--RIN 96 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEE---------C-CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTEEEEEEECC--CCS
T ss_pred CEEEEEeCCCCcEEeeeeec---------C-CCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCCeeeeeEEee--cCC
Confidence 66888888877622122221 0 012344555666764 3666677888888884 55433222221 123
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCC-CeeEEEc-cccccccCCEEEecCCCCcccEEEEecCCcEEEEECC--
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEG-KGIWEQH-LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK-- 587 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G-~~~W~~~-~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~-- 587 (857)
..+....+..||. -|+++..++.+.+|+... ...+... ........+....+..||. -+++++.+|.+.+|+..
T Consensus 97 ~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~ 174 (372)
T 1k8k_C 97 RAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIK 174 (372)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCT
T ss_pred CceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEcccc
Confidence 3456667777774 477777889999997643 3322221 1122233455566776764 36667778999999842
Q ss_pred ----------------CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE-EEEeCC
Q 003012 588 ----------------DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGE 650 (857)
Q Consensus 588 ----------------~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~-~i~~g~ 650 (857)
.+..+..+. .....+....+.. +| .-|++++.+|.+++++-.++... .+....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~----~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 244 (372)
T 1k8k_C 175 EVEERPAPTPWGSKMPFGELMFESS-----SSCGWVHGVCFSA----NG-SRVAWVSHDSTVCLADADKKMAVATLASET 244 (372)
T ss_dssp TTSCCCCCBTTBSCCCTTCEEEECC-----CCSSCEEEEEECS----SS-SEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred cccccccccccccccchhhheEecC-----CCCCeEEEEEECC----CC-CEEEEEeCCCEEEEEECCCCceeEEEccCC
Confidence 333332221 1112344444542 22 36788888999999887655433 232221
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.. +....+..||. ++++..+|.+++|+...
T Consensus 245 ~~---v~~~~~~~~~~--~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 245 LP---LLAVTFITESS--LVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp CC---EEEEEEEETTE--EEEEETTSSCEEEEEET
T ss_pred CC---eEEEEEecCCC--EEEEEeCCeEEEEEccC
Confidence 12 22334556664 66667899999998643
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=1 Score=49.71 Aligned_cols=203 Identities=12% Similarity=-0.009 Sum_probs=112.5
Q ss_pred ccEEEecCCCCCccEEEEeeCCeEEEEe-C--CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-C
Q 003012 467 SPTVVDLDGDGNLDILVGTSFGLFYVLD-H--HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E 542 (857)
Q Consensus 467 spavaDlDGDG~~DIvVg~~~G~Lyv~~-~--dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~ 542 (857)
.+....+..||..=+++++.+|.|.+++ . .|+....+... .....+....+..||. -|++++.++.++.|+. +
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--CFSKRPNAISIAEDDT-TVIIADKFGDVYSIDINS 180 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--ECSSCEEEEEECTTSS-EEEEEETTSEEEEEETTS
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--cCCCCceEEEEcCCCC-EEEEEeCCCcEEEEecCC
Confidence 3556778888875456677788888888 3 45544333211 1123456667777875 4677778899999975 3
Q ss_pred CCeeE-EEccccccccCCEEEecCCC--CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCC
Q 003012 543 GKGIW-EQHLKSLVTQGPSIGDVDGD--GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKS 619 (857)
Q Consensus 543 G~~~W-~~~~~~~~~~~vavgDlDGD--G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gD 619 (857)
+...- ...........+....+..| +..-|+.++.++.|++|+..++..+..+..... ..+....+. |
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~s-d---- 251 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK----HFVSSICCG-K---- 251 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS----SCEEEEEEC-S----
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC----CceEEEEEC-C----
Confidence 33211 00000011123333445555 223466777789999999877765533221111 223333332 1
Q ss_pred CCeEEEEEecCCeEEEEcCCCCceE-EEEeCC----------------------cceeeEEEEeecCCCCccEEEEe-cC
Q 003012 620 KGLTIVTTSFDGYLYLIDGPTSCAD-VVDIGE----------------------TSYSMVLADNVDGGDDLDLIVTT-MN 675 (857)
Q Consensus 620 G~~DLvv~s~dG~ly~~dg~~g~~~-~i~~g~----------------------~~~s~~~a~DlDGDG~~DLvv~t-~~ 675 (857)
..-|++++.++.+.+++-.++... .+.... .....+...-+..||.. |++++ .+
T Consensus 252 -~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~-l~~~~~~d 329 (450)
T 2vdu_B 252 -DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF-VAFFVEAT 329 (450)
T ss_dssp -TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE-EEEEETTC
T ss_pred -CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE-EEEEECCC
Confidence 135778888999999987765433 233211 00011222235556653 55555 78
Q ss_pred CcEEEEeC
Q 003012 676 GNVFCFST 683 (857)
Q Consensus 676 G~V~~~~~ 683 (857)
+.|++|+.
T Consensus 330 ~~i~iw~~ 337 (450)
T 2vdu_B 330 KCIIILEM 337 (450)
T ss_dssp SEEEEEEE
T ss_pred CeEEEEEe
Confidence 99999987
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.54 E-value=1.2 Score=48.21 Aligned_cols=215 Identities=16% Similarity=0.095 Sum_probs=127.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.|+.|+..+++........ ....+....+..||. -|++++.+|.|.+++ .+++....+... .
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~ 176 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD-----------ESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKLRTMAGH----Q 176 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC-----------TTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCC----S
T ss_pred CeEEEeeCCCCcEeEeeecC-----------CCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEEEEecCC----C
Confidence 67999999998876554431 012345566777775 467777889999998 466655443322 1
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecC--CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAE--GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~--G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
..+....++++ -++.++.++.+.+|+.. +....... .....+....+..||. -+++++.++.+.+|+..++
T Consensus 177 ~~v~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~ 249 (401)
T 4aez_A 177 ARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQ---GHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSS 249 (401)
T ss_dssp SCEEEEEEETT---EEEEEETTSEEEEEETTSSSCEEEEEE---CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCS
T ss_pred CceEEEEECCC---EEEEEcCCCCEEEEecccCcceeeEEc---CCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCC
Confidence 22333444432 57778888999999874 22222221 1122344556666664 3677778899999998877
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe--cCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCC
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS--FDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDD 666 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s--~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~ 666 (857)
.....+.. . ..++....+.. ++..-+++++ .++.+++++..++.... +..+. .+....+..||.
T Consensus 250 ~~~~~~~~--~---~~~v~~~~~~p----~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~----~v~~~~~s~~~~ 316 (401)
T 4aez_A 250 IPKFTKTN--H---NAAVKAVAWCP----WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS----QVTSLIWSPHSK 316 (401)
T ss_dssp SEEEEECC--C---SSCCCEEEECT----TSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS----CEEEEEECSSSS
T ss_pred CccEEecC--C---cceEEEEEECC----CCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC----cEEEEEECCCCC
Confidence 66543221 1 12233334432 3334445543 68999999977654433 32221 233445677776
Q ss_pred ccEEEEe--cCCcEEEEeCC
Q 003012 667 LDLIVTT--MNGNVFCFSTP 684 (857)
Q Consensus 667 ~DLvv~t--~~G~V~~~~~~ 684 (857)
. |++++ .+|.+.+|+..
T Consensus 317 ~-l~~~~g~~dg~i~v~~~~ 335 (401)
T 4aez_A 317 E-IMSTHGFPDNNLSIWSYS 335 (401)
T ss_dssp E-EEEEECTTTCEEEEEEEE
T ss_pred e-EEEEeecCCCcEEEEecC
Confidence 4 55533 78999999864
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.50 E-value=0.97 Score=48.94 Aligned_cols=217 Identities=13% Similarity=0.084 Sum_probs=124.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCC--Cceeeeeeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHH--GKIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~d--G~~~~~~~~~~g~i 510 (857)
|.+..|+..+++........ ........+++ .-++.++.+|.|.+++-. +.....+.. .
T Consensus 156 g~i~iwd~~~~~~~~~~~~~------------~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~ 216 (401)
T 4aez_A 156 GLVDIYDVESQTKLRTMAGH------------QARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQG----H 216 (401)
T ss_dssp SCEEEEETTTCCEEEEECCC------------SSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEEC----C
T ss_pred CeEEEEECcCCeEEEEecCC------------CCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcC----C
Confidence 66888998888765543211 01122333433 256667778899999853 333222221 1
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEe--cCCcEEEEECC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT--LSGNIYVLSGK 587 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t--~~G~I~~l~~~ 587 (857)
...+....+..||. -|++++.++.+.+|+. ++...+.... ....+....+..+|..=++.++ .++.+.+|+..
T Consensus 217 ~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~ 292 (401)
T 4aez_A 217 SSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSIPKFTKTN---HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAA 292 (401)
T ss_dssp SSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSSEEEEECC---CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETT
T ss_pred CCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCCccEEecC---CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECC
Confidence 23455666777775 4777788899999987 4555554332 1223344556666654344443 58999999988
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEE--EecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCC
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT--TSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGG 664 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv--~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGD 664 (857)
+++....+.. . ..+....+.. +| ..+++ +..+|.+++++-.++.... ..+... ...+....+..|
T Consensus 293 ~~~~~~~~~~--~----~~v~~~~~s~----~~-~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~d 360 (401)
T 4aez_A 293 TGARVNTVDA--G----SQVTSLIWSP----HS-KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPD 360 (401)
T ss_dssp TCCEEEEEEC--S----SCEEEEEECS----SS-SEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTT
T ss_pred CCCEEEEEeC--C----CcEEEEEECC----CC-CeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCC
Confidence 8877654321 1 2344444542 22 34555 3368888888766543332 222111 112233346777
Q ss_pred CCccEEEEecCCcEEEEeCCC
Q 003012 665 DDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 665 G~~DLvv~t~~G~V~~~~~~~ 685 (857)
|.. |+.++.+|.|.+|+...
T Consensus 361 g~~-l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 361 GRI-LSTAASDENLKFWRVYD 380 (401)
T ss_dssp SSE-EEEECTTSEEEEEECCC
T ss_pred CCE-EEEEeCCCcEEEEECCC
Confidence 763 67778899999999754
No 82
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.48 E-value=0.6 Score=49.71 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=112.6
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC-CCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~-G~~ 545 (857)
.....++.||. -|+.++.++.|.+++. .++......+. ..-...+....+..||.. |+.++.++.+.+|+.. +..
T Consensus 19 v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~g~~-l~s~s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 19 CWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNY-LASASFDATTCIWKKNQDDF 95 (345)
T ss_dssp EEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEEEEC-SSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECCC-E
T ss_pred EEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeeeeec-cccCCcEEEEEECCCCCE-EEEEECCCcEEEEEccCCCe
Confidence 34566778885 3666777888888884 33322121111 112234666777888864 7777888999999763 322
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLv 625 (857)
....... .....+....+..||.. |+.++.++.+.+|+..++......... ..-...+....+.. ++ .-|+
T Consensus 96 ~~~~~~~-~h~~~v~~v~~sp~~~~-l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p----~~-~~l~ 166 (345)
T 3fm0_A 96 ECVTTLE-GHENEVKSVAWAPSGNL-LATCSRDKSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHP----SQ-ELLA 166 (345)
T ss_dssp EEEEEEC-CCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECS----SS-SCEE
T ss_pred EEEEEcc-CCCCCceEEEEeCCCCE-EEEEECCCeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECC----CC-CEEE
Confidence 2221111 12223445566677753 666778899999986555322111000 01112333444542 22 3477
Q ss_pred EEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 626 TTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 626 v~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
+++.++.+.+++...+.... ..+.. ....+....|+.||.. |+.++.+|.|.+|+.
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~-l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQR-LASCSDDRTVRIWRQ 223 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSSE-EEEEETTSCEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCCE-EEEEeCCCeEEEecc
Confidence 88888987777654442221 11111 1123444457888864 777889999999985
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.43 E-value=1.2 Score=52.61 Aligned_cols=223 Identities=15% Similarity=0.074 Sum_probs=130.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|.+|+..+++........ ...+....+..||. -|++++.+|.|.+++ .+|+....+... .
T Consensus 35 g~v~iwd~~~~~~~~~~~~~------------~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~----~ 97 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQVT------------ETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEKVVDFEAH----P 97 (814)
T ss_dssp SEEEEEETTTTEEEEEEECC------------SSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCEEEEEECC----S
T ss_pred CEEEEEECCCCceEEEEecC------------CCcEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEecC----C
Confidence 67899999888765544321 12244556666775 377777889999999 567655444322 2
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCC-CCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDG-DGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDG-DG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..||.. |++++.++.+.+|+............ .....+....++. || .-+++++.+|.|.+|+..++.
T Consensus 98 ~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~ 174 (814)
T 3mkq_A 98 DYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQST 174 (814)
T ss_dssp SCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSS
T ss_pred CCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 33556667778864 77788889999998643322221111 1112233344544 33 246677788999999976665
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
......... ...+....+.. .....-+++++.+|.+.+++..++.....-.+. ...+...-+..||. -|+
T Consensus 175 ~~~~~~~~~----~~~v~~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~-~l~ 244 (814)
T 3mkq_A 175 PNFTLTTGQ----ERGVNYVDYYP---LPDKPYMITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLP-III 244 (814)
T ss_dssp CSEEEECCC----TTCCCEEEECC---STTCCEEEEECTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSS-EEE
T ss_pred ceeEEecCC----CCCEEEEEEEE---CCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCC-EEE
Confidence 443322211 12233334431 012346788888999999987665433221111 11233334677776 366
Q ss_pred EEecCCcEEEEeCCC
Q 003012 671 VTTMNGNVFCFSTPA 685 (857)
Q Consensus 671 v~t~~G~V~~~~~~~ 685 (857)
+++.+|.|++|+..+
T Consensus 245 ~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 245 SGSEDGTLKIWNSST 259 (814)
T ss_dssp EEETTSCEEEEETTT
T ss_pred EEeCCCeEEEEECCC
Confidence 778899999998754
No 84
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.43 E-value=1.5 Score=48.01 Aligned_cols=222 Identities=12% Similarity=0.088 Sum_probs=128.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|.+||..+++....... + ...+....+..||. -|+.++.++.|.+++. .++....+.. ..
T Consensus 130 g~i~vwd~~~~~~~~~l~~-----------h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~~----h~ 192 (410)
T 1vyh_C 130 ATIKVWDYETGDFERTLKG-----------H-TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHG----HD 192 (410)
T ss_dssp SCEEEEETTTCCCCEEECC-----------C-SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCCC----CS
T ss_pred CeEEEEECCCCcEEEEEec-----------c-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEEcC----CC
Confidence 6789999988876433211 1 12244556777775 4666777888888884 4443322221 12
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..||. -|+.++.++.+.+|+. +|........ ....+....++.||.. |+.++.++.+.+|+..++.
T Consensus 193 ~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~---h~~~v~~~~~~~~g~~-l~s~s~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 193 HNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTG---HREWVRMVRPNQDGTL-IASCSNDQTVRVWVVATKE 267 (410)
T ss_dssp SCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeC---CCccEEEEEECCCCCE-EEEEcCCCeEEEEECCCCc
Confidence 3455566776775 3677888999999986 5554432211 1223444566777752 6666778999999987776
Q ss_pred eecccccccCCccccceEEEeccCCC---------------CCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceee
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRG---------------EKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSM 655 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg---------------~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~ 655 (857)
....+.. .. ..+....+..+. .+....-+++++.++.+.+++-.++.....-.+... .
T Consensus 268 ~~~~~~~--h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~--~ 340 (410)
T 1vyh_C 268 CKAELRE--HR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN--W 340 (410)
T ss_dssp EEEEECC--CS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS--C
T ss_pred eeeEecC--CC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC--c
Confidence 5432211 11 112222222110 001134588889999999999776644332222211 1
Q ss_pred EEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 656 VLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 656 ~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
+....+..+|.. |+.++.+|.|.+|+..
T Consensus 341 v~~v~~~~~g~~-l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 341 VRGVLFHSGGKF-ILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEEEECSSSSC-EEEEETTTEEEEECCT
T ss_pred EEEEEEcCCCCE-EEEEeCCCeEEEEECC
Confidence 233346777764 7778899999999874
No 85
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.42 E-value=1.2 Score=47.07 Aligned_cols=190 Identities=12% Similarity=0.091 Sum_probs=115.1
Q ss_pred EecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEE
Q 003012 471 VDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWE 548 (857)
Q Consensus 471 aDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~ 548 (857)
+.+..++. ++.++.++.|.+++ .+|+....+... ...+....+..||. -++.++.++.+.+|+. ++.....
T Consensus 149 ~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h----~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~~~~~ 221 (340)
T 1got_B 149 CRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGH----TGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQT 221 (340)
T ss_dssp EEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCSEEEE
T ss_pred EEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCC----CCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCeeEEE
Confidence 33444553 77888889999998 466654433222 22355566777775 4667778899999986 5554433
Q ss_pred EccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe
Q 003012 549 QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS 628 (857)
Q Consensus 549 ~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s 628 (857)
... ....+....+..||.. |+.++.++.+.+|+..+++.+..+.. ......+....+.. +| .-|++++
T Consensus 222 ~~~---h~~~v~~v~~~p~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~~~~v~~~~~s~----~g-~~l~~g~ 289 (340)
T 1got_B 222 FTG---HESDINAICFFPNGNA-FATGSDDATCRLFDLRADQELMTYSH---DNIICGITSVSFSK----SG-RLLLAGY 289 (340)
T ss_dssp ECC---CSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECT----TS-SEEEEEE
T ss_pred EcC---CcCCEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCcEEEEEcc---CCcccceEEEEECC----CC-CEEEEEC
Confidence 221 1223444556666643 67777899999999877765533321 11122344445543 22 3577888
Q ss_pred cCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 629 FDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 629 ~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
.+|.+++++...+.....-.+.. ..+....+..||.. |+.++.+|.|.+|+
T Consensus 290 ~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~-l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMA-VATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSC-EEEEETTSCEEEEC
T ss_pred CCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCE-EEEEcCCccEEecC
Confidence 89999999876554332212211 12344457777764 77788999999884
No 86
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.40 E-value=1 Score=45.85 Aligned_cols=213 Identities=13% Similarity=0.124 Sum_probs=118.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CC---ceeeeeeeecc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HG---KIREKFPLEMA 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG---~~~~~~~~~~g 508 (857)
|.|..|+..+++........ ........+..||. -+++++.+|.+.+++- +. +....+...
T Consensus 39 g~v~vw~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~-- 103 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTG------------QGFLNSVCYDSEKE-LLLFGGKDTMINGVPLFATSGEDPLYTLIGH-- 103 (313)
T ss_dssp SEEEEEEESSSEEEEEEEEC------------SSCEEEEEEETTTT-EEEEEETTSCEEEEETTCCTTSCC-CEECCC--
T ss_pred CcEEEEECCCCEEEEEeecC------------CccEEEEEECCCCC-EEEEecCCCeEEEEEeeecCCCCcccchhhc--
Confidence 67888888877654443221 12244555666764 4667777888887773 22 222222211
Q ss_pred ceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
...+....+++ . -++++..++.+.+|+ .+...............+.+... ++. -+++++.++.+..|+.
T Consensus 104 --~~~i~~~~~~~--~-~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~--~~~-~l~~~~~d~~i~i~d~-- 172 (313)
T 3odt_A 104 --QGNVCSLSFQD--G-VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSF--SEN-KFLTASADKTIKLWQN-- 172 (313)
T ss_dssp --SSCEEEEEEET--T-EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEET--TTT-EEEEEETTSCEEEEET--
T ss_pred --ccCEEEEEecC--C-EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccC--CCC-EEEEEECCCCEEEEec--
Confidence 12233333433 2 577788889999998 55554443321111111222222 222 3677778899999983
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
++....+... ....+....+.. ++. +++++.+|.+++++-..+.....-.+. ...+....+..|| .
T Consensus 173 ~~~~~~~~~~----~~~~i~~~~~~~----~~~--~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~--~ 238 (313)
T 3odt_A 173 DKVIKTFSGI----HNDVVRHLAVVD----DGH--FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIKLLPNG--D 238 (313)
T ss_dssp TEEEEEECSS----CSSCEEEEEEEE----TTE--EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTS--C
T ss_pred CceEEEEecc----CcccEEEEEEcC----CCe--EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEEEecCC--C
Confidence 3333222211 112333333331 333 889999999999997765443321111 1223444577888 3
Q ss_pred EEEEecCCcEEEEeCCC
Q 003012 669 LIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~~~ 685 (857)
|++++.+|.|++|+...
T Consensus 239 l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EEEEETTSEEEEECTTT
T ss_pred EEEEecCCEEEEEECCC
Confidence 89999999999999744
No 87
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=96.37 E-value=0.66 Score=48.20 Aligned_cols=143 Identities=15% Similarity=0.192 Sum_probs=78.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccc--
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAE-- 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~-- 509 (857)
+.|+++|..+++..+....... ..+.-..+..||..=++....++.|++++. +|+.....+.....
T Consensus 21 ~~v~~~d~~~~~~~~~~~~~~~-----------~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCVMPDK-----------FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TEEEEEETTTTEEEEEEECSSC-----------CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CeEEEEECCCCcEEEEEecCCC-----------CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 6799999999988776554210 013334466787533333345678999994 67665544432100
Q ss_pred eeceeEEEeecCCCCeEEEEEeC------------CCcEEEEec-CCCee---EEEccccccccCCEEEecCCCCcccEE
Q 003012 510 IQGAVVAADINDDGKIELVTTDT------------HGNVAAWTA-EGKGI---WEQHLKSLVTQGPSIGDVDGDGHSDVV 573 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~------------~G~l~~~~~-~G~~~---W~~~~~~~~~~~vavgDlDGDG~~DLv 573 (857)
....+....+..||+. |+++.. .+.+++|+. +|+.. ..... ...+....++.||. ++
T Consensus 90 ~~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~~s~dg~--l~ 162 (349)
T 1jmx_B 90 VGRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM----PRQVYLMRAADDGS--LY 162 (349)
T ss_dssp EEECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC----CSSCCCEEECTTSC--EE
T ss_pred ccccccceEECCCCCE-EEEEcccccccccccccCCCeEEEEECCCccccceeeeccC----CCcccceeECCCCc--EE
Confidence 0111233346677865 444442 377888875 33221 11111 11233334677886 77
Q ss_pred EEecCCcEEEEECCCCCeeccc
Q 003012 574 VPTLSGNIYVLSGKDGSKVRPY 595 (857)
Q Consensus 574 v~t~~G~I~~l~~~~G~~~~~~ 595 (857)
++ ++.++.++..+|+....+
T Consensus 163 ~~--~~~i~~~d~~~~~~~~~~ 182 (349)
T 1jmx_B 163 VA--GPDIYKMDVKTGKYTVAL 182 (349)
T ss_dssp EE--SSSEEEECTTTCCEEEEE
T ss_pred Ec--cCcEEEEeCCCCceeccc
Confidence 65 445889988888765433
No 88
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.36 E-value=0.97 Score=46.52 Aligned_cols=143 Identities=16% Similarity=0.154 Sum_probs=80.4
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccc-
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAE- 509 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~- 509 (857)
.+.|.++|..+++..+...+... ...+.-..++.||..=++....++.|++++ .+|+....++.....
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~ 79 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADA----------GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE 79 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTC----------TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred CCeEEEEECCCCcEEEEEEcCCC----------CCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccc
Confidence 36799999999988776654210 001333446778864333344467899999 477766555442100
Q ss_pred eeceeEEEeecCCCCeEEEEEe------------CCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEe
Q 003012 510 IQGAVVAADINDDGKIELVTTD------------THGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT 576 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~------------~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t 576 (857)
....+...-++.||.. |+++. .++.+.+|+. +++..+...... .+.-..+..||.. |+++
T Consensus 80 ~~~~~~~~~~s~dg~~-l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~-l~~~- 152 (337)
T 1pby_B 80 RVKSLFGAALSPDGKT-LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR----QITMLAWARDGSK-LYGL- 152 (337)
T ss_dssp EEECTTCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS----SCCCEEECTTSSC-EEEE-
T ss_pred ccccccceEECCCCCE-EEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC----CcceeEECCCCCE-EEEe-
Confidence 0112223345677764 45553 3578889987 444444433221 1122235666653 5555
Q ss_pred cCCcEEEEECCCCCee
Q 003012 577 LSGNIYVLSGKDGSKV 592 (857)
Q Consensus 577 ~~G~I~~l~~~~G~~~ 592 (857)
++.++.|+..+|+..
T Consensus 153 -~~~i~~~d~~~~~~~ 167 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLV 167 (337)
T ss_dssp -SSSEEEEETTTTEEE
T ss_pred -CCeEEEEECCCCcEe
Confidence 677888887777654
No 89
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=96.34 E-value=1.2 Score=45.85 Aligned_cols=195 Identities=17% Similarity=0.171 Sum_probs=117.6
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
+....+..||. -|++++.++.|++++. +++........ .....+....+..||. -+++++.++.+.+|+. +++.
T Consensus 100 v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~ 175 (337)
T 1gxr_A 100 IRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELT--SSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL 175 (337)
T ss_dssp EEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEE--CSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE
T ss_pred EEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecc--cCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCce
Confidence 44556777774 4667777889999984 44422222221 1122345566677765 4677778899999986 4444
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLv 625 (857)
...... ....+....+..||. -+++++.++.++.|+..+++....+.. ..++....+.. +| .-++
T Consensus 176 ~~~~~~---~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~~------~~~v~~~~~s~----~~-~~l~ 240 (337)
T 1gxr_A 176 VRQFQG---HTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGRQLQQHDF------TSQIFSLGYCP----TG-EWLA 240 (337)
T ss_dssp EEEECC---CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEEC------SSCEEEEEECT----TS-SEEE
T ss_pred eeeeec---ccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCceEeeecC------CCceEEEEECC----CC-CEEE
Confidence 433321 122344456666664 366777899999999887776544321 12333444542 22 4577
Q ss_pred EEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 626 TTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 626 v~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+++.+|.+++++..++........ ...+....+..||.. |++++.+|.+.+|+...
T Consensus 241 ~~~~~~~i~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~-l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 241 VGMESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFAYCGKW-FVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EEETTSCEEEEETTSSCEEEECCC---SSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred EEcCCCcEEEEECCCCCeEEEcCC---ccceeEEEECCCCCE-EEEecCCCcEEEEECCC
Confidence 888889999988776654332111 112334457777764 77778899999999743
No 90
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.33 E-value=0.56 Score=48.71 Aligned_cols=199 Identities=12% Similarity=0.026 Sum_probs=109.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC----
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE---- 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~---- 542 (857)
+....+..||..-|++++.+|.|++++. .......+... .....+....+.. + .-|+.++.++.+.+|+..
T Consensus 59 v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNN--EANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp EEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSC--CCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTT
T ss_pred eEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEecccc--CCCCceEEEEeCC-C-CEEEEEcCCCeEEEEccccccc
Confidence 3444555566435777888899999986 54433222210 0122344444554 3 357777888999999752
Q ss_pred ------CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC-CCeecccccccCCccccceEEEeccCC
Q 003012 543 ------GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD-GSKVRPYPYRTHGRVMNQVLLVDLTKR 615 (857)
Q Consensus 543 ------G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~-G~~~~~~~~~~~g~~~s~~~v~DlDgD 615 (857)
++...... ....+....+..++ +++++.++.+.+|+..+ +......... .....+....+..
T Consensus 135 ~~~~~~~~~~~~~~----~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~i~~i~~~~- 203 (342)
T 1yfq_A 135 GVIAVKNLNSNNTK----VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEES---GLKYQIRDVALLP- 203 (342)
T ss_dssp BCEEEEESCSSSSS----SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEEC---SCSSCEEEEEECS-
T ss_pred ccccccCCeeeEEe----eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeec---CCCCceeEEEECC-
Confidence 22222111 22344555677766 88888899999999766 4432111111 1112334444432
Q ss_pred CCCCCCeEEEEEecCCeEEEEcCCCC-------ceEEEEeCCc------ceeeEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 616 GEKSKGLTIVTTSFDGYLYLIDGPTS-------CADVVDIGET------SYSMVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 616 g~gDG~~DLvv~s~dG~ly~~dg~~g-------~~~~i~~g~~------~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
.+ ..-+++++.+|.+.+++-... ....+..... ....+....+..||.. |++++.+|.|++|+
T Consensus 204 --~~-~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 204 --KE-QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISCWN 279 (342)
T ss_dssp --GG-GCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC-EEEEETTSCEEEEE
T ss_pred --CC-CCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE-EEEecCCceEEEEc
Confidence 01 245778888998777553332 1222221111 0113444457778764 77888999999999
Q ss_pred CCC
Q 003012 683 TPA 685 (857)
Q Consensus 683 ~~~ 685 (857)
...
T Consensus 280 ~~~ 282 (342)
T 1yfq_A 280 LQT 282 (342)
T ss_dssp TTT
T ss_pred Ccc
Confidence 753
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.32 E-value=0.22 Score=55.04 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=106.5
Q ss_pred cEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeec-CCCCeEEEEEeCCCcEEEEecCCCeeEEEcccccccc
Q 003012 480 DILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADIN-DDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQ 557 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~D-GDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~ 557 (857)
=|++|+.+|.|.+++. .++........ + -...+....+. .||. -|+.++.++.+.+|+..+...-..........
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~-g-H~~~V~~l~f~p~~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~ 210 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGI-G-AGGSITGLKFNPLNTN-QFYASSMEGTTRLQDFKGNILRVFASSDTINI 210 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCC-S-SSCCCCEEEECSSCTT-EEEEECSSSCEEEEETTSCEEEEEECCSSCSC
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEcc-C-CCCCEEEEEEeCCCCC-EEEEEeCCCEEEEeeccCCceeEEeccCCCCc
Confidence 3667788899999984 34322212111 1 11233444455 3443 47778888999999886654322221112222
Q ss_pred CCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 558 GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 558 ~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
.+...+++.||.. |+.++.+|.|.+|+.. |+.+..+.. -...+....++. ++..-+++++.++.+.+++
T Consensus 211 ~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~-~~~~~~~~~-----h~~~v~~v~~~p----~~~~~~~s~s~d~~v~iwd 279 (435)
T 4e54_B 211 WFCSLDVSASSRM-VVTGDNVGNVILLNMD-GKELWNLRM-----HKKKVTHVALNP----CCDWFLATASVDQTVKIWD 279 (435)
T ss_dssp CCCCEEEETTTTE-EEEECSSSBEEEEESS-SCBCCCSBC-----CSSCEEEEEECT----TCSSEEEEEETTSBCCEEE
T ss_pred cEEEEEECCCCCE-EEEEeCCCcEeeeccC-cceeEEEec-----ccceEEeeeecC----CCceEEEEecCcceeeEEe
Confidence 2333456667653 6667788999999864 544432221 122344455542 3445677788899888877
Q ss_pred CCCCceEE-EEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 638 GPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 638 g~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
........ +.........+....|..||.. |+.++.+|.|.+|+...
T Consensus 280 ~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~-l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 280 LRQVRGKASFLYSLPHRHPVNAACFSPDGAR-LLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp TTTCCSSSCCSBCCBCSSCEEECCBCTTSSE-EEEEESSSCEEEEESSS
T ss_pred cccccccceEEEeeeccccccceeECCCCCe-eEEEcCCCEEEEEECCC
Confidence 55432111 1000011112344457778764 77788999999999754
No 92
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.31 E-value=0.38 Score=50.15 Aligned_cols=200 Identities=13% Similarity=0.118 Sum_probs=105.9
Q ss_pred cCCCCCccEEEEeeCCeEEEEeC-CCc-eeeeeeeeccceeceeEEEe----ecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 473 LDGDGNLDILVGTSFGLFYVLDH-HGK-IREKFPLEMAEIQGAVVAAD----INDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 473 lDGDG~~DIvVg~~~G~Lyv~~~-dG~-~~~~~~~~~g~i~ss~~vaD----~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
+..||. -|+.++.+|.|.+++. .++ ....+....+.....+.... +..+|. -++++..++.+.+|+. ++..
T Consensus 125 ~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 125 IGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp CC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEETTTTEE
T ss_pred cCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEECccCce
Confidence 345664 4667777889999984 443 33333222221111222222 455664 4666777899999987 4444
Q ss_pred eEEEccccccccCCEEEecCC---CCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCe
Q 003012 546 IWEQHLKSLVTQGPSIGDVDG---DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGL 622 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDG---DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~ 622 (857)
.+..... ..+....+.. +|.. +++++.+|.+.+|+..++.....+...........+....+.. ++..
T Consensus 203 ~~~~~~~----~~v~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~ 273 (357)
T 3i2n_A 203 RWETNIK----NGVCSLEFDRKDISMNK-LVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP----QNRE 273 (357)
T ss_dssp EEEEECS----SCEEEEEESCSSSSCCE-EEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET----TEEE
T ss_pred eeecCCC----CceEEEEcCCCCCCCCE-EEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC----CCCc
Confidence 4432221 2334445554 4432 6777788999999876555443322111001122344444442 3444
Q ss_pred EEEEEecCCeEEEEcCCCCce-----------------EEEEeCCcceeeEEEEeecCCCCccEE-EEecCCcEEEEeCC
Q 003012 623 TIVTTSFDGYLYLIDGPTSCA-----------------DVVDIGETSYSMVLADNVDGGDDLDLI-VTTMNGNVFCFSTP 684 (857)
Q Consensus 623 DLvv~s~dG~ly~~dg~~g~~-----------------~~i~~g~~~~s~~~a~DlDGDG~~DLv-v~t~~G~V~~~~~~ 684 (857)
-+++++.+|.+++++-..+.. ..+..-......+....+..||.. |+ .++.+|.|.+|+..
T Consensus 274 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 274 LFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRG-LCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTT-EEEEEETTSEEEEEEEC
T ss_pred EEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCe-EEEEecCCCcEEEEECC
Confidence 578888899887776432211 111110011122444557888865 54 57889999999864
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.26 E-value=0.58 Score=50.61 Aligned_cols=206 Identities=12% Similarity=0.101 Sum_probs=117.4
Q ss_pred ccEEEecCC-CCCccEEEEeeCCeEEEEeC-CCceeeee--eee-ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec
Q 003012 467 SPTVVDLDG-DGNLDILVGTSFGLFYVLDH-HGKIREKF--PLE-MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 467 spavaDlDG-DG~~DIvVg~~~G~Lyv~~~-dG~~~~~~--~~~-~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~ 541 (857)
.+....++. ++ .-|+.++.+|.|.+++- ++...... ++. .......+....+..+|..-|+.++.++.+.+|+.
T Consensus 83 ~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 83 PVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp CEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEET
T ss_pred CEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEEC
Confidence 345566777 44 35667777899999984 44321100 010 01122346667788888667888888999999986
Q ss_pred -CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCC
Q 003012 542 -EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSK 620 (857)
Q Consensus 542 -~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG 620 (857)
+++....... ......+....++.||. -|++++.++.+.+|+..+++.+..+.....+. .+....+.. +|
T Consensus 162 ~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~ 232 (402)
T 2aq5_A 162 GTGAAVLTLGP-DVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT---RPVHAVFVS----EG 232 (402)
T ss_dssp TTTEEEEEECT-TTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECSSCSS---SCCEEEECS----TT
T ss_pred CCCCccEEEec-CCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCceeeeeccCCCCC---cceEEEEcC----CC
Confidence 5554444310 11223445556766765 37777789999999988887664431111111 112222321 22
Q ss_pred CeEEEEE---ecCCeEEEEcCCCCce--EEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 621 GLTIVTT---SFDGYLYLIDGPTSCA--DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 621 ~~DLvv~---s~dG~ly~~dg~~g~~--~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.-++++ +.++.+++++..++.. ........ ..+....++.||..=++++..+|.|.+|+...
T Consensus 233 -~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 233 -KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTS--SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp -EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCC--SSCEEEEEETTTTEEEEEETTCSCEEEEEECS
T ss_pred -cEEEEeccCCCCceEEEEcCccccCCceEEeccCC--CceeEEEEcCCCCEEEEEEcCCCeEEEEEecC
Confidence 234455 4788898888665432 12222211 12333347778775333455799999998754
No 94
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=96.21 E-value=0.28 Score=57.08 Aligned_cols=156 Identities=15% Similarity=0.188 Sum_probs=103.9
Q ss_pred eEEEEEeCCCcEEEEecCCCeeEEEccc------------cc--------cccCCEEEecCCCCc-ccEEEEec---CCc
Q 003012 525 IELVTTDTHGNVAAWTAEGKGIWEQHLK------------SL--------VTQGPSIGDVDGDGH-SDVVVPTL---SGN 580 (857)
Q Consensus 525 ~DLvv~~~~G~l~~~~~~G~~~W~~~~~------------~~--------~~~~vavgDlDGDG~-~DLvv~t~---~G~ 580 (857)
.=|+++..+|.+++|+..|++.|.+--. .. +...+.+.|+.-+|. .-++++.. ...
T Consensus 86 ~~VyvGaNDGmLHaF~a~G~E~wAfiP~~~l~~L~~l~~~~y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG~~ 165 (570)
T 3hx6_A 86 PRVYVGANDGMLHGFDTDGNETFAFIPSAVFEKMHKLTARGYQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGGKG 165 (570)
T ss_dssp CEEEEECSSSCEEECCSSCCCCEEECCHHHHHHCC-------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSCSE
T ss_pred cEEEEECCCceEEEECCCCcEEEEECCHHHHHHHHHHhccCccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCCcE
Confidence 3567788889999998889999985211 01 123566777654442 23455443 236
Q ss_pred EEEEECCC---CCeecccc---cccCCccccceEEEeccCCCCCCCCeEEEEEec------CCeEEEEcCCCCceEE-EE
Q 003012 581 IYVLSGKD---GSKVRPYP---YRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF------DGYLYLIDGPTSCADV-VD 647 (857)
Q Consensus 581 I~~l~~~~---G~~~~~~~---~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~------dG~ly~~dg~~g~~~~-i~ 647 (857)
+|+++-.+ .+.+|.+. ...-|...+.|.++-+. +|..-+++++- ...||+++..+|...+ +.
T Consensus 166 ~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~-----~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i~ 240 (570)
T 3hx6_A 166 LFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLH-----NGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKLE 240 (570)
T ss_dssp EEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECT-----TSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCCCceeEEECCCCccccCccccCCEEEEec-----CCCEEEEEccccCCCCCccEEEEEECCCCceEEEEe
Confidence 88998654 55677766 22335556667777774 45666777663 3489999988876654 44
Q ss_pred eCC-----cceeeEEEEeecCCCCccEEEE-ecCCcEEEEeCCC
Q 003012 648 IGE-----TSYSMVLADNVDGGDDLDLIVT-TMNGNVFCFSTPA 685 (857)
Q Consensus 648 ~g~-----~~~s~~~a~DlDGDG~~DLvv~-t~~G~V~~~~~~~ 685 (857)
... ...+.+.+.|.|+||..|.+.+ ...|+|+.|+..+
T Consensus 241 ~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl~~ 284 (570)
T 3hx6_A 241 VTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDLIA 284 (570)
T ss_dssp ECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEECSC
T ss_pred cCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEcCC
Confidence 432 2346788899999999997655 7889999998754
No 95
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.14 E-value=1.4 Score=48.28 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=122.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|.+||..+++..+..... ...+....+..++ -++.++.+|.|.+++ .+|+....+... .
T Consensus 142 g~i~vwd~~~~~~~~~~~~h------------~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~h----~ 203 (464)
T 3v7d_B 142 KMIRVYDSINKKFLLQLSGH------------DGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGH----N 203 (464)
T ss_dssp SCEEEEETTTTEEEEEECCC------------SSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECCC----S
T ss_pred CcEEEEECCCCcEEEEEeCC------------CcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECCC----C
Confidence 67999999998877654311 1223445556666 567777889999998 466655443322 1
Q ss_pred ceeEEEeec--CCCCeEEEEEeCCCcEEEEecC-CCeeEEEcc------------------ccccccCCEEEecCCCCcc
Q 003012 512 GAVVAADIN--DDGKIELVTTDTHGNVAAWTAE-GKGIWEQHL------------------KSLVTQGPSIGDVDGDGHS 570 (857)
Q Consensus 512 ss~~vaD~D--GDG~~DLvv~~~~G~l~~~~~~-G~~~W~~~~------------------~~~~~~~vavgDlDGDG~~ 570 (857)
..+....+. .++ .-++.++.++.+.+|+.. +........ .........+..+..+|.
T Consensus 204 ~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 281 (464)
T 3v7d_B 204 STVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN- 281 (464)
T ss_dssp SCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETT-
T ss_pred CccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCC-
Confidence 223333443 333 357778888999999763 322211000 000111112222233332
Q ss_pred cEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCC
Q 003012 571 DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE 650 (857)
Q Consensus 571 DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~ 650 (857)
-+++++.++.+.+|+..+++.+..+... ...+....++. +| .-+++++.+|.+++++-.++.....-.+.
T Consensus 282 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~-----~~~v~~~~~~~----~~-~~l~sg~~dg~i~vwd~~~~~~~~~~~~h 351 (464)
T 3v7d_B 282 IVVSGSYDNTLIVWDVAQMKCLYILSGH-----TDRIYSTIYDH----ER-KRCISASMDTTIRIWDLENGELMYTLQGH 351 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEEET----TT-TEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCEEEEEEcC----CC-CEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence 3667778999999998877765443211 12233333432 22 35788899999999997766443321121
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
. ..+....+++ .-|+.++.+|.|.+|+...
T Consensus 352 ~--~~v~~~~~~~---~~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 352 T--ALVGLLRLSD---KFLVSAAADGSIRGWDAND 381 (464)
T ss_dssp S--SCEEEEEECS---SEEEEEETTSEEEEEETTT
T ss_pred C--CcEEEEEEcC---CEEEEEeCCCcEEEEECCC
Confidence 1 1222333442 3467778999999999854
No 96
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=96.14 E-value=1.7 Score=45.91 Aligned_cols=221 Identities=10% Similarity=0.028 Sum_probs=123.3
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecccee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
++.+..||..+++......-. ...+..+.+..||. -|+.++.++.|.+++-.+......... ....
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h------------~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~ 162 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGH------------QSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEK-ENHS 162 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECC------------CSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTT-TSCS
T ss_pred CCcEEEEECCCCcEEEEEcCC------------CCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecc-cCCC
Confidence 367889999888765432211 12345567778875 466777788999998655433221110 0112
Q ss_pred ceeEEEeecCCCC---------eEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEE
Q 003012 512 GAVVAADINDDGK---------IELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIY 582 (857)
Q Consensus 512 ss~~vaD~DGDG~---------~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~ 582 (857)
..+....+..++. .-++.++.++.+.+|+.++........ ....+....+..||.. |+.++.++.|.
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~s~~g~~-l~sgs~dg~v~ 238 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA---HESNVNHLSISPNGKY-IATGGKDKKLL 238 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC---CSSCEEEEEECTTSSE-EEEEETTCEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC---ccccceEEEECCCCCE-EEEEcCCCeEE
Confidence 2344445555552 357778888999999866554433221 1223455667777754 67777899999
Q ss_pred EEECCCCC-eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCC----------
Q 003012 583 VLSGKDGS-KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGE---------- 650 (857)
Q Consensus 583 ~l~~~~G~-~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~---------- 650 (857)
+|+..+.. ....+ ... ..+....++. ++ .+++++.++.+.+++-.++.... ..+..
T Consensus 239 iwd~~~~~~~~~~~--~~~----~~v~~v~~sp----~~--~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 239 IWDILNLTYPQREF--DAG----STINQIAFNP----KL--QWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEESSCCSSCSEEE--ECS----SCEEEEEECS----SS--CEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEECCCCcccceee--cCC----CcEEEEEECC----CC--CEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 99863222 21111 111 1233344442 22 24455556667777654432211 11110
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
.....+....+..||.. |++++.+|.|.+|+.
T Consensus 307 ~~~~~v~~~~~sp~g~~-l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 307 GKNPQCTSLAWNALGKK-LFAGFTDGVIRTFSF 338 (343)
T ss_dssp CSCCCEEEEEECSSSCC-EEEEETTSEEEEEEE
T ss_pred CCCCceEEEEECCCCCe-EEEecCCceEEEEEE
Confidence 01112444568888864 888899999999975
No 97
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.12 E-value=2.8 Score=49.18 Aligned_cols=223 Identities=10% Similarity=0.034 Sum_probs=128.4
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccce
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEI 510 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i 510 (857)
..+.|.+||..+++......- + ...+..+.+..||. -|+.++.++.|.+++..+.............
T Consensus 450 ~Dg~v~vwd~~~~~~~~~~~~-----------h-~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h 516 (694)
T 3dm0_A 450 WDGELRLWDLAAGVSTRRFVG-----------H-TKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGH 516 (694)
T ss_dssp TTSEEEEEETTTTEEEEEEEC-----------C-SSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSC
T ss_pred CCCcEEEEECCCCcceeEEeC-----------C-CCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCC
Confidence 346788888888765443221 1 12244566777775 3777788899999986554332221111112
Q ss_pred eceeEEEeecCCCC-eEEEEEeCCCcEEEEecC-CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC
Q 003012 511 QGAVVAADINDDGK-IELVTTDTHGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD 588 (857)
Q Consensus 511 ~ss~~vaD~DGDG~-~DLvv~~~~G~l~~~~~~-G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~ 588 (857)
...+....+..++. .-|+.++.++.+.+|+.. +....... .....+....+..||.. |+.++.+|.|.+|+..+
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~---~h~~~v~~v~~spdg~~-l~sg~~Dg~i~iwd~~~ 592 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA---GHTGYVSTVAVSPDGSL-CASGGKDGVVLLWDLAE 592 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSE-EEEEETTSBCEEEETTT
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEc---CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEECCC
Confidence 23356666776664 457778889999999874 33332211 11223455667777753 66677899999999888
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCc----------------
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGET---------------- 651 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~---------------- 651 (857)
|+.+..+.. . ..+...-+.. ++ .++++..++.+.+++-.++.... +.....
T Consensus 593 ~~~~~~~~~--~----~~v~~~~~sp----~~--~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (694)
T 3dm0_A 593 GKKLYSLEA--N----SVIHALCFSP----NR--YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660 (694)
T ss_dssp TEEEECCBC--S----SCEEEEEECS----SS--SEEEEEETTEEEEEETTTTEEEEEECCCCC----------------
T ss_pred CceEEEecC--C----CcEEEEEEcC----CC--cEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCc
Confidence 876644321 1 2233333432 22 24444555667777766543321 111000
Q ss_pred ceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 652 SYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 652 ~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
....+....+..||.. |+.++.+|.|.+|+.
T Consensus 661 ~~~~~~~l~~spdg~~-l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 661 KVIYCTSLNWSADGST-LFSGYTDGVIRVWGI 691 (694)
T ss_dssp CCCCEEEEEECTTSSE-EEEEETTSEEEEEEC
T ss_pred eeEEeeeEEEcCCCCE-EEEEcCCCeEEEEec
Confidence 0001234467888874 777889999999985
No 98
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.25 Score=52.98 Aligned_cols=234 Identities=9% Similarity=0.066 Sum_probs=130.1
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCC----c-eeeeeeee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHG----K-IREKFPLE 506 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG----~-~~~~~~~~ 506 (857)
.+.|..|+..+++.. ..+ .. ......+....+..||. -|++++.+|.|.+++... . ....+..
T Consensus 44 d~~v~iw~~~~~~~~--~~~--~~------~~~~~~v~~~~~s~~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~- 111 (416)
T 2pm9_A 44 DSSLELWSLLAADSE--KPI--AS------LQVDSKFNDLDWSHNNK-IIAGALDNGSLELYSTNEANNAINSMARFSN- 111 (416)
T ss_dssp CCCCEEEESSSGGGC--SCS--CC------CCCSSCEEEEEECSSSS-CEEEEESSSCEEEECCSSTTSCCCEEEECCC-
T ss_pred CCeEEEEEccCCCCC--cEE--EE------EecCCceEEEEECCCCC-eEEEEccCCeEEEeecccccccccchhhccC-
Confidence 356888888766421 000 00 00112345566777775 466677788999988533 2 2222211
Q ss_pred ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC-CC------eeEEEccccccccCCEEEecCCCCcccEEEEecCC
Q 003012 507 MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GK------GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSG 579 (857)
Q Consensus 507 ~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~-G~------~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G 579 (857)
....+....+..|+..-|+.++.++.+.+|+.. +. ..+...........+....+..||..-++.++.++
T Consensus 112 ---h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 188 (416)
T 2pm9_A 112 ---HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN 188 (416)
T ss_dssp ---SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS
T ss_pred ---CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC
Confidence 122344556676644567788888999999863 33 22221111112234445566777555577778899
Q ss_pred cEEEEECCCCCeecccccccCC-ccccceEEEeccCCCCCCCCeEEEEEecCC---eEEEEcCCCCceEEEEeCCcceee
Q 003012 580 NIYVLSGKDGSKVRPYPYRTHG-RVMNQVLLVDLTKRGEKSKGLTIVTTSFDG---YLYLIDGPTSCADVVDIGETSYSM 655 (857)
Q Consensus 580 ~I~~l~~~~G~~~~~~~~~~~g-~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG---~ly~~dg~~g~~~~i~~g~~~~s~ 655 (857)
.+.+|+..+++....+...... .....+....+.. ++..-+++++.++ .+++++-..+......+.......
T Consensus 189 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 264 (416)
T 2pm9_A 189 FASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP----KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG 264 (416)
T ss_dssp CEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS----SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred CEEEEECCCCCcceEEeccccccccCCceEEEEECC----CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence 9999998877765443322100 0023444555552 4445677888887 888888665421111111011122
Q ss_pred EEEEeecC-CCCccEEEEecCCcEEEEeCCC
Q 003012 656 VLADNVDG-GDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 656 ~~a~DlDG-DG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+....+.. ||. -|+.++.+|.|.+|+...
T Consensus 265 v~~~~~s~~~~~-~l~s~~~dg~v~~wd~~~ 294 (416)
T 2pm9_A 265 ILSLDWCHQDEH-LLLSSGRDNTVLLWNPES 294 (416)
T ss_dssp EEEEEECSSCSS-CEEEEESSSEEEEECSSS
T ss_pred eeEEEeCCCCCC-eEEEEeCCCCEEEeeCCC
Confidence 34445666 554 477888999999999754
No 99
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.09 E-value=0.75 Score=48.97 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=111.7
Q ss_pred cEEEEeeCCeEEEEeC-CCce-----eeeeeeeccc-eeceeEEEeec----CCCCeEEEEEeCCCcEEEEecC------
Q 003012 480 DILVGTSFGLFYVLDH-HGKI-----REKFPLEMAE-IQGAVVAADIN----DDGKIELVTTDTHGNVAAWTAE------ 542 (857)
Q Consensus 480 DIvVg~~~G~Lyv~~~-dG~~-----~~~~~~~~g~-i~ss~~vaD~D----GDG~~DLvv~~~~G~l~~~~~~------ 542 (857)
-|+.++.+|.|++++. .++. ...+...... ....+....+. .+|..-|+++..++.+.+|+..
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 162 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 162 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence 4566677888888873 3432 2122111000 02445666677 7776658888889999999763
Q ss_pred -CCee-EEE--ccc------cccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeeccccccc-CCccccceEEEe
Q 003012 543 -GKGI-WEQ--HLK------SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRT-HGRVMNQVLLVD 611 (857)
Q Consensus 543 -G~~~-W~~--~~~------~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~-~g~~~s~~~v~D 611 (857)
+... |.. ... ......+....+..+| -+++++.+|.+.+|+..+++.+..+.... ......++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred ccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 3332 211 110 1123345566778888 67777788999999988777665443200 000023344445
Q ss_pred ccCCCCCCCCeEEEEEecC---CeEEEEcCCCCceEEEEeCCc-----------ceeeEEEEeecCCCCccEEEEecCCc
Q 003012 612 LTKRGEKSKGLTIVTTSFD---GYLYLIDGPTSCADVVDIGET-----------SYSMVLADNVDGGDDLDLIVTTMNGN 677 (857)
Q Consensus 612 lDgDg~gDG~~DLvv~s~d---G~ly~~dg~~g~~~~i~~g~~-----------~~s~~~a~DlDGDG~~DLvv~t~~G~ 677 (857)
++. ++ .-|++++.+ |.+++++..++.....-.+.. ....+....+..||.. |++++.+|.
T Consensus 241 ~~~----~~-~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~ 314 (397)
T 1sq9_A 241 FSP----QG-SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGK 314 (397)
T ss_dssp ECS----ST-TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSE-EEEEETTSE
T ss_pred ECC----CC-CEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCE-EEEEeCCCe
Confidence 542 22 356777788 899999876654332211100 1122444457777764 777788999
Q ss_pred EEEEeCCC
Q 003012 678 VFCFSTPA 685 (857)
Q Consensus 678 V~~~~~~~ 685 (857)
|++|+...
T Consensus 315 i~iwd~~~ 322 (397)
T 1sq9_A 315 LRFWDVKT 322 (397)
T ss_dssp EEEEETTT
T ss_pred EEEEEcCC
Confidence 99999754
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.94 Score=47.42 Aligned_cols=206 Identities=14% Similarity=0.100 Sum_probs=109.5
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCC-CceeeeeeeeccceeceeEEEeecCC--CCeEEEEEeCCCcEEEEecC-C
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHH-GKIREKFPLEMAEIQGAVVAADINDD--GKIELVTTDTHGNVAAWTAE-G 543 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~d-G~~~~~~~~~~g~i~ss~~vaD~DGD--G~~DLvv~~~~G~l~~~~~~-G 543 (857)
+....++.||. -|++++.+|.|.+++-. ++......+. .....+....+..+ | .-|+.++.++.+.+|+.. +
T Consensus 14 v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 14 IHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp EEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETT
T ss_pred EEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeEec--CCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCC
Confidence 44556777775 36666778888888743 2221111111 11223444555544 4 346777788999999863 4
Q ss_pred C--eeEEEccccccccCCEEEecCCC--CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCC--
Q 003012 544 K--GIWEQHLKSLVTQGPSIGDVDGD--GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGE-- 617 (857)
Q Consensus 544 ~--~~W~~~~~~~~~~~vavgDlDGD--G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~-- 617 (857)
. ...... .....+....+..+ |. -+++++.++.+.+|+..++........... ..++....+.....
T Consensus 90 ~~~~~~~~~---~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 90 RWSQIAVHA---VHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAH---AIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEEEEEC---CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECC---TTCEEEEEECCCC---
T ss_pred ceeEeeeec---CCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCC---CCceEEEEEcCccccc
Confidence 3 222211 12223444556555 32 367777889999999776643222111111 12233333321000
Q ss_pred ------CCCCeEEEEEecCCeEEEEcCCCCceE--EE-EeCCcceeeEEEEeecCCC--CccEEEEecCCcEEEEeCCC
Q 003012 618 ------KSKGLTIVTTSFDGYLYLIDGPTSCAD--VV-DIGETSYSMVLADNVDGGD--DLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 618 ------gDG~~DLvv~s~dG~ly~~dg~~g~~~--~i-~~g~~~~s~~~a~DlDGDG--~~DLvv~t~~G~V~~~~~~~ 685 (857)
.....-+++++.+|.+++++-..+... .. .+.. ....+....+..|+ ..-|++++.+|.+.+|+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~ 240 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 240 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCC
Confidence 001345778888998888875443222 11 1111 11224444577774 34577788999999998754
No 101
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.03 E-value=1.7 Score=45.03 Aligned_cols=219 Identities=11% Similarity=0.020 Sum_probs=122.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeC-----CeEEEEeC-CCceeeeeeee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSF-----GLFYVLDH-HGKIREKFPLE 506 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~-----G~Lyv~~~-dG~~~~~~~~~ 506 (857)
+.|..|+..+++........ ..+....+..||. -++++..+ +.+++++. .+.........
T Consensus 96 g~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 161 (369)
T 3zwl_B 96 YSIKLWDVSNGQCVATWKSP-------------VPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKV 161 (369)
T ss_dssp TEEEEEETTTCCEEEEEECS-------------SCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEE
T ss_pred CeEEEEECCCCcEEEEeecC-------------CCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeeccc
Confidence 67999999988876665421 1244556677775 35555555 78888773 22211111110
Q ss_pred c---------cceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCC--CeeEEEccccccccCCEEEecCCCCcccEEEE
Q 003012 507 M---------AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEG--KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVP 575 (857)
Q Consensus 507 ~---------g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G--~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~ 575 (857)
. ......+....+..||. -|+++..++.+.+|+... ........ ....+....+..||. -|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~ 236 (369)
T 3zwl_B 162 SEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDL---HEKSISDMQFSPDLT-YFITS 236 (369)
T ss_dssp CSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEEC---CSSCEEEEEECTTSS-EEEEE
T ss_pred ccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEec---CCCceeEEEECCCCC-EEEEe
Confidence 0 00011455666676775 467778889999998743 33333221 122344456666664 36677
Q ss_pred ecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCC--------------eEEEEcCCCC
Q 003012 576 TLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDG--------------YLYLIDGPTS 641 (857)
Q Consensus 576 t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG--------------~ly~~dg~~g 641 (857)
+.++.+.+|+..+++....+.. . .++....+.. ++ .-+++++.++ .+++++..++
T Consensus 237 ~~d~~i~v~d~~~~~~~~~~~~--~----~~~~~~~~~~----~~-~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 237 SRDTNSFLVDVSTLQVLKKYET--D----CPLNTAVITP----LK-EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC--S----SCEEEEEECS----SS-SEEEEEECCC-------------CEEEEEETTTC
T ss_pred cCCceEEEEECCCCceeeeecC--C----CCceeEEecC----CC-ceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 7889999999888877655431 1 2222233332 22 2344444444 4555665544
Q ss_pred ceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 642 CADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 642 ~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
.....-.+. ...+....+..||.. |+.++.+|.|.+|+..
T Consensus 306 ~~~~~~~~~--~~~v~~~~~s~~~~~-l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 306 EEIGRVQGH--FGPLNTVAISPQGTS-YASGGEDGFIRLHHFE 345 (369)
T ss_dssp CEEEEEECC--SSCEEEEEECTTSSE-EEEEETTSEEEEEEEC
T ss_pred cchhheecc--cCcEEEEEECCCCCE-EEEEcCCCeEEEEECc
Confidence 332221111 122444457777763 6677889999999874
No 102
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.02 E-value=1.6 Score=44.52 Aligned_cols=213 Identities=10% Similarity=0.079 Sum_probs=113.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecC--CCCeEEEEEeCCCcEEEEecC-C
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADIND--DGKIELVTTDTHGNVAAWTAE-G 543 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DG--DG~~DLvv~~~~G~l~~~~~~-G 543 (857)
+....+..||. -|+.++.+|.|.+++- .+...+............+....+.. ||. -|+.++.++.+.+|+.. +
T Consensus 14 v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~ 91 (351)
T 3f3f_A 14 VHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPD 91 (351)
T ss_dssp EEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTT
T ss_pred eeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCC
Confidence 45566777775 3667777898988884 34322211111111223355556655 343 46777888999999863 3
Q ss_pred Ce-----eEEEc-cccccccCCEEEecCCC--CcccEEEEecCCcEEEEECCCCCeecccccccC--------Cccccce
Q 003012 544 KG-----IWEQH-LKSLVTQGPSIGDVDGD--GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH--------GRVMNQV 607 (857)
Q Consensus 544 ~~-----~W~~~-~~~~~~~~vavgDlDGD--G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~--------g~~~s~~ 607 (857)
.. .|... ........+....+..+ |. -++.++.+|.+.+|+..+++....+..... ......+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSD 170 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCC
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccce
Confidence 21 12211 01112223444556665 43 366677889999999877765543322110 0111223
Q ss_pred EEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCC---ccEEEEecCCcEEEEeCC
Q 003012 608 LLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDD---LDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 608 ~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~---~DLvv~t~~G~V~~~~~~ 684 (857)
....+..+ .-...-+++++.++.+.+.....+....+..-......+....+..+|. .-|+.++.+|.|.+|+..
T Consensus 171 ~~~~~~p~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 171 FCLSWCPS--RFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp EEEEECCC--SSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEE
T ss_pred eEEEeccC--CCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCC
Confidence 33334321 0113456777777777666655554433222111222344455777773 346777899999999874
Q ss_pred C
Q 003012 685 A 685 (857)
Q Consensus 685 ~ 685 (857)
.
T Consensus 249 ~ 249 (351)
T 3f3f_A 249 E 249 (351)
T ss_dssp E
T ss_pred C
Confidence 4
No 103
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=96.02 E-value=1.5 Score=44.09 Aligned_cols=189 Identities=16% Similarity=0.196 Sum_probs=100.1
Q ss_pred EecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCCeeEEE
Q 003012 471 VDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDT-HGNVAAWTAEGKGIWEQ 549 (857)
Q Consensus 471 aDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~~~W~~ 549 (857)
.-++.||. ++++..++.|+.++.+|.....+... . ...+...-++.||. |++++. .+.++.|+. +......
T Consensus 72 i~~~~~g~--l~v~~~~~~i~~~d~~~~~~~~~~~~--~-~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~-~~~~~~~ 143 (270)
T 1rwi_B 72 LAVDGAGT--VYVTDFNNRVVTLAAGSNNQTVLPFD--G-LNYPEGLAVDTQGA--VYVADRGNNRVVKLAA-GSKTQTV 143 (270)
T ss_dssp EEECTTCC--EEEEETTTEEEEECTTCSCCEECCCC--S-CSSEEEEEECTTCC--EEEEEGGGTEEEEECT-TCCSCEE
T ss_pred eEECCCCC--EEEEcCCCEEEEEeCCCceEeeeecC--C-cCCCcceEECCCCC--EEEEECCCCEEEEEEC-CCceeEe
Confidence 34566775 77777677899999877654433221 1 12244444567775 777654 567888854 3222221
Q ss_pred ccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe
Q 003012 550 HLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS 628 (857)
Q Consensus 550 ~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s 628 (857)
..... ...+.-.-++.||. ++++.. ++.|+.|+...+.... .. .... ..+.-.-++ .+| .+++++
T Consensus 144 ~~~~~-~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~-~~---~~~~-~~p~~i~~d----~~g--~l~v~~ 209 (270)
T 1rwi_B 144 LPFTG-LNDPDGVAVDNSGN--VYVTDTDNNRVVKLEAESNNQVV-LP---FTDI-TAPWGIAVD----EAG--TVYVTE 209 (270)
T ss_dssp CCCCS-CCSCCCEEECTTCC--EEEEEGGGTEEEEECTTTCCEEE-CC---CSSC-CSEEEEEEC----TTC--CEEEEE
T ss_pred ecccc-CCCceeEEEeCCCC--EEEEECCCCEEEEEecCCCceEe-ec---ccCC-CCceEEEEC----CCC--CEEEEE
Confidence 11111 11122223456674 777765 5789998875443321 11 1111 122222233 233 466666
Q ss_pred c-CCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 629 F-DGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 629 ~-dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
. ++.+++++..+......... ....+...-++.||. |+++. .++.|.+|+...
T Consensus 210 ~~~~~v~~~~~~~~~~~~~~~~--~~~~p~~i~~~~~g~--l~v~~~~~~~v~~~~~~~ 264 (270)
T 1rwi_B 210 HNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVAVDSDRT--VYVADRGNDRVVKLTSLE 264 (270)
T ss_dssp TTTSCEEEECTTCSCCEECCCC--SCSCEEEEEECTTCC--EEEEEGGGTEEEEECCCG
T ss_pred CCCCcEEEEcCCCCcceeeccC--CCCCceeEEECCCCC--EEEEECCCCEEEEEcCCC
Confidence 4 56788888765543322111 122344445778885 77774 578899888743
No 104
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.96 E-value=1.2 Score=47.71 Aligned_cols=206 Identities=9% Similarity=0.072 Sum_probs=121.4
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCc------eeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGK------IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT 540 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~------~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~ 540 (857)
+....+..|+..-|+.++.++.|++++. .++ ........ ......+....+..+|..-++.+..++.+.+|+
T Consensus 116 v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 3445667775556777788899999984 443 11111000 111233555667777666788888899999998
Q ss_pred c-CCCeeEEEccccc---cccCCEEEecCCCCcccEEEEecCC---cEEEEECCCCC-eecccccccCCccccceEEEec
Q 003012 541 A-EGKGIWEQHLKSL---VTQGPSIGDVDGDGHSDVVVPTLSG---NIYVLSGKDGS-KVRPYPYRTHGRVMNQVLLVDL 612 (857)
Q Consensus 541 ~-~G~~~W~~~~~~~---~~~~vavgDlDGDG~~DLvv~t~~G---~I~~l~~~~G~-~~~~~~~~~~g~~~s~~~v~Dl 612 (857)
. +++.......... ....+....+..||..-++.+..++ .|.+|+..++. ....+.. .....+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~----~~~~~v~~~~~ 270 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ----GHQKGILSLDW 270 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS----CCSSCEEEEEE
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec----CccCceeEEEe
Confidence 6 4554444332211 0334555667777765577777777 89999987653 3222210 11223444445
Q ss_pred cCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 613 TKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 613 DgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.. +...-|++++.+|.+++++-.++.... +...... +....+..||..-|+.++.+|.|.+|+...
T Consensus 271 s~----~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~---v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 271 CH----QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW---CFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp CS----SCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC---CCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred CC----CCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc---eEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 32 123457888889999999876654332 2211111 222346777754577778899999999754
No 105
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=95.94 E-value=1.9 Score=44.56 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=126.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.+..||..+++........ ........++.+|. -++.++.++.|.+++ .+++....++.. .
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~ 149 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGH------------SNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAH----S 149 (312)
T ss_dssp SEEEEEETTTCCEEEEEECC------------SSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCC----S
T ss_pred CEEEEEECCCCcEEEEEcCC------------CCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCC----C
Confidence 67888998888765433211 11234556777775 366677788999998 456654433322 1
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....++.||. -++.++.++.+.+|+. ++........ .....+....+..||. -|++++.++.+.+|+-.+++
T Consensus 150 ~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 150 DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGK 225 (312)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE
T ss_pred CcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeeEEec--cCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCc
Confidence 2345566777776 4677788899999986 4544333211 1122334456677765 36777789999999988887
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
.+..+........ ........ .+..-|++++.+|.+++++-.++.....-.+. ...+....+..++.. |+
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~~------~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~-l~ 295 (312)
T 4ery_A 226 CLKTYTGHKNEKY-CIFANFSV------TGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH--TDVVISTACHPTENI-IA 295 (312)
T ss_dssp EEEEECSSCCSSS-CCCEEEEC------SSSCEEEECCTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECSSSSE-EE
T ss_pred EEEEEEecCCceE-EEEEEEEe------CCCcEEEEECCCCEEEEEECCCchhhhhhhcc--CCcEEEEeecCcCCc-eE
Confidence 6544332211111 11111111 12345778888999999987765443221111 112333346666653 33
Q ss_pred EEe--cCCcEEEEeC
Q 003012 671 VTT--MNGNVFCFST 683 (857)
Q Consensus 671 v~t--~~G~V~~~~~ 683 (857)
.++ .+|.|.+|+.
T Consensus 296 s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 296 SAALENDKTIKLWKS 310 (312)
T ss_dssp EEECTTTCCEEEEEC
T ss_pred EEEccCCccEEEecC
Confidence 343 4788888875
No 106
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.89 E-value=0.98 Score=49.53 Aligned_cols=210 Identities=11% Similarity=0.085 Sum_probs=115.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
|.|.+||..+++........ ........++++ -++.++.+|.|.+++. .+..........+ ..
T Consensus 193 g~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~~ 256 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIHH------------CEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVG-HR 256 (435)
T ss_dssp SCEEEEESSSCCEEEEECCC------------CSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECC-CS
T ss_pred CeEEEEECCCCcEEEEEcCC------------CCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecC-CC
Confidence 67999999988875543211 112334445432 5667777889999984 4443321111111 12
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....++ |. -|++++.++.+.+|+. +++........ ...+....+++ .-+++++.+|.|.+|+..+|+
T Consensus 257 ~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~---~~~v~~~~~~~---~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 257 AAVNVVDFD--DK-YIVSASGDRTIKVWNTSTCEFVRTLNGH---KRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp SCEEEEEEE--TT-EEEEEETTSEEEEEETTTCCEEEEEECC---SSCEEEEEEET---TEEEEEETTSCEEEEETTTCC
T ss_pred CcEEEEEeC--CC-EEEEEeCCCeEEEEECCcCcEEEEEcCC---CCcEEEEEeCC---CEEEEEeCCCeEEEEECCCCC
Confidence 234444453 32 5778888999999986 56555443211 11223333332 246777789999999988887
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc----------eEEEEeCCcceeeEEEEe
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC----------ADVVDIGETSYSMVLADN 660 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~----------~~~i~~g~~~~s~~~a~D 660 (857)
.+..+... ...+....+++ .-|++++.+|.+.+++-.++. ...+.........+ .
T Consensus 328 ~~~~~~~h-----~~~v~~~~~~~-------~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l---~ 392 (435)
T 1p22_A 328 CLRVLEGH-----EELVRCIRFDN-------KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL---Q 392 (435)
T ss_dssp EEEEECCC-----SSCEEEEECCS-------SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE---E
T ss_pred EEEEEeCC-----cCcEEEEEecC-------CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE---E
Confidence 76443321 12334444442 348888899988888743221 11121111111112 2
Q ss_pred ecCCCCccEEEEecCCcEEEEeCCC
Q 003012 661 VDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 661 lDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+ ||.. |+.++.+|.|.+|+...
T Consensus 393 ~--~~~~-l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 393 F--DEFQ-IVSSSHDDTILIWDFLN 414 (435)
T ss_dssp E--CSSC-EEECCSSSEEEEEC---
T ss_pred e--CCCE-EEEEeCCCEEEEEECCC
Confidence 3 4443 77788899999998743
No 107
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.87 E-value=1.5 Score=46.46 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=115.7
Q ss_pred cEEEecCC-CCCccEEEEeeCCeEEEEeC-CCceeeeeeeec---------cceeceeEEEeecCCCCeEEEEEeCCCcE
Q 003012 468 PTVVDLDG-DGNLDILVGTSFGLFYVLDH-HGKIREKFPLEM---------AEIQGAVVAADINDDGKIELVTTDTHGNV 536 (857)
Q Consensus 468 pavaDlDG-DG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~---------g~i~ss~~vaD~DGDG~~DLvv~~~~G~l 536 (857)
+....+.. ||. -|+.++.+|.|.+++. ++.....+.... ......+....+..++..-++.++.++.+
T Consensus 46 v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i 124 (408)
T 4a11_B 46 INTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL 124 (408)
T ss_dssp EEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred EEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence 44566776 664 4666777888999884 444332221110 01223455666766444457777888999
Q ss_pred EEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCC
Q 003012 537 AAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKR 615 (857)
Q Consensus 537 ~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgD 615 (857)
.+|+. ++............ ..+.+.....++. -++++..++.+.+|+..+++....+.. ...++....+..
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~v~~~~~~~- 196 (408)
T 4a11_B 125 KVWDTNTLQTADVFNFEETV-YSHHMSPVSTKHC-LVAVGTRGPKVQLCDLKSGSCSHILQG-----HRQEILAVSWSP- 196 (408)
T ss_dssp EEEETTTTEEEEEEECSSCE-EEEEECSSCSSCC-EEEEEESSSSEEEEESSSSCCCEEECC-----CCSCEEEEEECS-
T ss_pred EEeeCCCCccceeccCCCce-eeeEeecCCCCCc-EEEEEcCCCeEEEEeCCCcceeeeecC-----CCCcEEEEEECC-
Confidence 99986 44444433322111 1122222222222 366677889999999877765533221 122344445542
Q ss_pred CCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeC--------------CcceeeEEEEeecCCCCccEEEEecCCcEEEE
Q 003012 616 GEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIG--------------ETSYSMVLADNVDGGDDLDLIVTTMNGNVFCF 681 (857)
Q Consensus 616 g~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g--------------~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~ 681 (857)
++..-+++++.+|.+++++-..+......+. ......+....+..||.. |++++.+|.+.+|
T Consensus 197 ---~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~vw 272 (408)
T 4a11_B 197 ---RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH-LLTVGTDNRMRLW 272 (408)
T ss_dssp ---SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE-EEEEETTSCEEEE
T ss_pred ---CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE-EEEecCCCeEEEE
Confidence 3444577888999998888654421111110 011123445567777753 7778899999999
Q ss_pred eCCC
Q 003012 682 STPA 685 (857)
Q Consensus 682 ~~~~ 685 (857)
+...
T Consensus 273 d~~~ 276 (408)
T 4a11_B 273 NSSN 276 (408)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 9754
No 108
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.79 E-value=2.6 Score=45.05 Aligned_cols=221 Identities=14% Similarity=0.076 Sum_probs=126.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCc-----eeeeeeeec
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGK-----IREKFPLEM 507 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~-----~~~~~~~~~ 507 (857)
+.+.+||..+++........ ........+..||. -++.++.++.+.+++-... ......+.
T Consensus 86 g~v~vWd~~~~~~~~~~~~~------------~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~- 151 (354)
T 2pbi_B 86 GKVIVWDSFTTNKEHAVTMP------------CTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVA- 151 (354)
T ss_dssp SEEEEEETTTCCEEEEEECS------------SSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-
T ss_pred CeEEEEECCCCCcceEEecC------------CCCEEEEEECCCCC-EEEEeeCCCCEEEEEEeccccccccccceeee-
Confidence 67889998887765443321 01233455677775 4666777888777763211 00011111
Q ss_pred cceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCC--CCcccEEEEecCCcEEEE
Q 003012 508 AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDG--DGHSDVVVPTLSGNIYVL 584 (857)
Q Consensus 508 g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDG--DG~~DLvv~t~~G~I~~l 584 (857)
.-...+....+..|+. -|+.++.++.+.+|+. +|+..-.... ....+...++.. +|. -++.++.+|.+..|
T Consensus 152 -~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 152 -MHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHG---HGADVLCLDLAPSETGN-TFVSGGCDKKAMVW 225 (354)
T ss_dssp -ECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEEC---CSSCEEEEEECCCSSCC-EEEEEETTSCEEEE
T ss_pred -ccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcC---CCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEE
Confidence 1122345556666664 4778888999999986 5654433221 112233444433 332 36667789999999
Q ss_pred ECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCC
Q 003012 585 SGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGG 664 (857)
Q Consensus 585 ~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGD 664 (857)
+..+|+.+..+... ...+....+.. +| .-+++++.++.+.+++-..+.....-........+...++..|
T Consensus 226 d~~~~~~~~~~~~h-----~~~v~~v~~~p----~~-~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 226 DMRSGQCVQAFETH-----ESDVNSVRYYP----SG-DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp ETTTCCEEEEECCC-----SSCEEEEEECT----TS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred ECCCCcEEEEecCC-----CCCeEEEEEeC----CC-CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence 98888765433211 12333444542 22 3578888999999888765533222111111112344567888
Q ss_pred CCccEEEEecCCcEEEEeCC
Q 003012 665 DDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 665 G~~DLvv~t~~G~V~~~~~~ 684 (857)
|.. |++++.+|.|.+|+..
T Consensus 296 g~~-l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 296 GRL-LFAGYNDYTINVWDVL 314 (354)
T ss_dssp SSE-EEEEETTSCEEEEETT
T ss_pred CCE-EEEEECCCcEEEEECC
Confidence 864 6777889999999964
No 109
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=4.3 Score=47.88 Aligned_cols=220 Identities=13% Similarity=0.099 Sum_probs=127.3
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CC-ceeeeeeeeccc
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HG-KIREKFPLEMAE 509 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG-~~~~~~~~~~g~ 509 (857)
.|.|.+|+..+++........ ...+....+..||.. |++++.+|.|.+++- .+ .....+..
T Consensus 76 dg~i~vw~~~~~~~~~~~~~~------------~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~---- 138 (814)
T 3mkq_A 76 DFRIRVFNYNTGEKVVDFEAH------------PDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEG---- 138 (814)
T ss_dssp TSEEEEEETTTCCEEEEEECC------------SSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEEC----
T ss_pred CCeEEEEECCCCcEEEEEecC------------CCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcC----
Confidence 367999999888876554321 123455667778864 677778899999884 33 22111111
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCC--CCcccEEEEecCCcEEEEEC
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDG--DGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDG--DG~~DLvv~t~~G~I~~l~~ 586 (857)
....+....++.+...-|++++.++.+.+|+. .+...+...... ...+....+.. ||. -+++++.+|.+.+|+.
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKP-YMITASDDLTIKIWDY 215 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCC-EEEEECTTSEEEEEET
T ss_pred CCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCC-EEEEEeCCCEEEEEEC
Confidence 12234445555522235777788899999986 455544433221 12333444444 443 3667778899999998
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEE-EeCCcceeeEEEEeecCCC
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVV-DIGETSYSMVLADNVDGGD 665 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i-~~g~~~~s~~~a~DlDGDG 665 (857)
.+++....+... ...+...-+.. +| .-+++++.+|.+++++..++..... ..... .+...-+..+|
T Consensus 216 ~~~~~~~~~~~~-----~~~v~~~~~~~----~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~---~v~~~~~~~~~ 282 (814)
T 3mkq_A 216 QTKSCVATLEGH-----MSNVSFAVFHP----TL-PIIISGSEDGTLKIWNSSTYKVEKTLNVGLE---RSWCIATHPTG 282 (814)
T ss_dssp TTTEEEEEEECC-----SSCEEEEEECS----SS-SEEEEEETTSCEEEEETTTCSEEEEECCSSS---SEEEEEECTTC
T ss_pred CCCcEEEEEcCC-----CCCEEEEEEcC----CC-CEEEEEeCCCeEEEEECCCCcEEEEeecCCC---cEEEEEEccCC
Confidence 777765433211 12333334442 22 3577888899999998776544332 22111 22333466777
Q ss_pred CccEEEEecCCcEEEEeCC
Q 003012 666 DLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 666 ~~DLvv~t~~G~V~~~~~~ 684 (857)
..-+++...++.+.+|...
T Consensus 283 ~~~~~~~~~~~~~~~~~~~ 301 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLG 301 (814)
T ss_dssp GGGEEEEEETTEEEEEECS
T ss_pred CceEEEEEeCCCEEEEEcC
Confidence 6655666667777777754
No 110
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=95.65 E-value=2.2 Score=43.39 Aligned_cols=199 Identities=11% Similarity=0.172 Sum_probs=110.0
Q ss_pred cccEEEecCCCCCccEEEEe-eCCeEEEEeCCCceeeeeeeec--cceeceeEEEee-cCCCCeEEEEEeC--CCcEEEE
Q 003012 466 SSPTVVDLDGDGNLDILVGT-SFGLFYVLDHHGKIREKFPLEM--AEIQGAVVAADI-NDDGKIELVTTDT--HGNVAAW 539 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~-~~G~Lyv~~~dG~~~~~~~~~~--g~i~ss~~vaD~-DGDG~~DLvv~~~--~G~l~~~ 539 (857)
..|.-.-++.||. ++++. .++.|++++.+|+..+.+.... ......+...-+ +.+| .|++++. ++.+.+|
T Consensus 30 ~~p~~v~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g--~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 30 TEPSGVAVNAQND--IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSG--DIIVTERSPTHQIQIY 105 (286)
T ss_dssp SCEEEEEECTTCC--EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTT--EEEEEECGGGCEEEEE
T ss_pred CCCceEEECCCCC--EEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCC--eEEEEcCCCCCEEEEE
Confidence 4465566777774 67664 4678999998888765554321 011123333444 3555 5677764 6789999
Q ss_pred ecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 540 TAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 540 ~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
+.+|+......... ...+.-.-++.||. ++++.. ++.|+.|+. +|+....+... +.... +.-.-++.
T Consensus 106 d~~g~~~~~~~~~~--~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~--~~~~~-p~~i~~~~---- 173 (286)
T 1q7f_A 106 NQYGQFVRKFGATI--LQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCS--KHLEF-PNGVVVND---- 173 (286)
T ss_dssp CTTSCEEEEECTTT--CSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECT--TTCSS-EEEEEECS----
T ss_pred CCCCcEEEEecCcc--CCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCC--CccCC-cEEEEECC----
Confidence 98887765543211 12233344566774 777754 578888885 57665443211 11112 22222332
Q ss_pred CCCeEEEEEe-cCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEec-CC-cEEEEeCCC
Q 003012 619 SKGLTIVTTS-FDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTM-NG-NVFCFSTPA 685 (857)
Q Consensus 619 DG~~DLvv~s-~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~-~G-~V~~~~~~~ 685 (857)
+| .+++++ .++.+++++..+.....+... .....+...-++.||. |++++. ++ .|.+|+..+
T Consensus 174 ~g--~l~v~~~~~~~i~~~~~~g~~~~~~~~~-g~~~~p~~i~~d~~G~--l~v~~~~~~~~i~~~~~~g 238 (286)
T 1q7f_A 174 KQ--EIFISDNRAHCVKVFNYEGQYLRQIGGE-GITNYPIGVGINSNGE--ILIADNHNNFNLTIFTQDG 238 (286)
T ss_dssp SS--EEEEEEGGGTEEEEEETTCCEEEEESCT-TTSCSEEEEEECTTCC--EEEEECSSSCEEEEECTTS
T ss_pred CC--CEEEEECCCCEEEEEcCCCCEEEEEccC-CccCCCcEEEECCCCC--EEEEeCCCCEEEEEECCCC
Confidence 33 366665 467888888655443333211 1112233333677774 777764 43 899998643
No 111
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=95.62 E-value=2.6 Score=43.96 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=110.6
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEeC-CCc--eeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCC
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLDH-HGK--IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGK 544 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~--~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~ 544 (857)
....+..||. -|++++.++.|++++. +++ ....+.. ....+....+..||. -|+.++.++.+.+|+. +++
T Consensus 12 ~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 12 SCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHELKE----HNGQVTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp CEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEEEEC----CSSCEEEEEEETTTT-EEEEEETTSCEEEEEEETTE
T ss_pred EEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeeeecC----CCCcccEEEEeCCCC-EEEEEcCCCeEEEEECCCCe
Confidence 3445666765 3556667889999884 443 2222221 123455566666775 3667778899999986 343
Q ss_pred eeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 545 ~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
........ .....+....+..||. -|++++.++.+.+|+...+...+.... ........+....+.. ++ .-+
T Consensus 86 ~~~~~~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~-~~~~~~~~i~~~~~~~----~~-~~l 157 (372)
T 1k8k_C 86 WKPTLVIL-RINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKH-IKKPIRSTVLSLDWHP----NS-VLL 157 (372)
T ss_dssp EEEEEECC-CCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEE-ECTTCCSCEEEEEECT----TS-SEE
T ss_pred eeeeEEee-cCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeee-eecccCCCeeEEEEcC----CC-CEE
Confidence 22222111 1233445566777764 366777788888877655542111110 1111123444555543 22 357
Q ss_pred EEEecCCeEEEEcCC------------------CCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 625 VTTSFDGYLYLIDGP------------------TSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 625 vv~s~dG~ly~~dg~------------------~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
++++.+|.+++++-. .+.... .+. .....+....+..||. -|++++.+|.+.+|+..
T Consensus 158 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~ 232 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF-ESS-SSCGWVHGVCFSANGS-RVAWVSHDSTVCLADAD 232 (372)
T ss_dssp EEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE-ECC-CCSSCEEEEEECSSSS-EEEEEETTTEEEEEEGG
T ss_pred EEEcCCCCEEEEEcccccccccccccccccccchhhheE-ecC-CCCCeEEEEEECCCCC-EEEEEeCCCEEEEEECC
Confidence 788889988888832 221111 111 1111234445777775 47777899999999974
No 112
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=95.60 E-value=2.6 Score=43.69 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=110.3
Q ss_pred cEEEecCCCCCccEEEEee---CCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCC--CeEEEEEeCCCcEEEEec
Q 003012 468 PTVVDLDGDGNLDILVGTS---FGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDG--KIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~---~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG--~~DLvv~~~~G~l~~~~~ 541 (857)
+....+..||..=+++++. ++.|.+++. +++........ ....+....+..++ ..-|+++..++.+.+|+.
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 97 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE---KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL 97 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEE---ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeec---ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence 4456677777544444544 788888884 55543222221 12345666777763 345778888999999986
Q ss_pred -CCC-eeEEEccccccccCCEEE---ecCCCCcccEEEEecCCcEEEEECCCCC-eecccccccCCccccceEEEe----
Q 003012 542 -EGK-GIWEQHLKSLVTQGPSIG---DVDGDGHSDVVVPTLSGNIYVLSGKDGS-KVRPYPYRTHGRVMNQVLLVD---- 611 (857)
Q Consensus 542 -~G~-~~W~~~~~~~~~~~vavg---DlDGDG~~DLvv~t~~G~I~~l~~~~G~-~~~~~~~~~~g~~~s~~~v~D---- 611 (857)
++. ...........-..+.+. -+..||. -|+.++.++.+.+|+..++. ....+... .+.....+....
T Consensus 98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 175 (357)
T 3i2n_A 98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPV-QGENKRDCWTVAFGNA 175 (357)
T ss_dssp TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCC-TTSCCCCEEEEEEECC
T ss_pred CCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceecccc-CCCCCCceEEEEEEec
Confidence 444 333322111101111111 2344554 36777788999999987665 33222211 111111222222
Q ss_pred ccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecC---CCCccEEEEecCCcEEEEeCC
Q 003012 612 LTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDG---GDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 612 lDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDG---DG~~DLvv~t~~G~V~~~~~~ 684 (857)
+.. + ..-+++++.+|.+++++-.++.......... .+....+.. +|.. |++++.+|.+++|+..
T Consensus 176 ~~~----~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 176 YNQ----E-ERVVCAGYDNGDIKLFDLRNMALRWETNIKN---GVCSLEFDRKDISMNK-LVATSLEGKFHVFDMR 242 (357)
T ss_dssp CC-----C-CCEEEEEETTSEEEEEETTTTEEEEEEECSS---CEEEEEESCSSSSCCE-EEEEESTTEEEEEEEE
T ss_pred cCC----C-CCEEEEEccCCeEEEEECccCceeeecCCCC---ceEEEEcCCCCCCCCE-EEEECCCCeEEEEeCc
Confidence 321 1 2457778888999999987765433221111 233334665 5543 7778889999999864
No 113
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=95.57 E-value=2.7 Score=44.52 Aligned_cols=214 Identities=11% Similarity=0.066 Sum_probs=116.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEe-eCCeEEEEeC-CCceeeeeeeeccc-
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT-SFGLFYVLDH-HGKIREKFPLEMAE- 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~-~~G~Lyv~~~-dG~~~~~~~~~~g~- 509 (857)
+.|.++|..++++....... ..|.-.-++.|| -+++++ .++.|++++. +++..+..+...+.
T Consensus 64 ~~v~viD~~t~~~~~~i~~~-------------~~p~~i~~~~~g--~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~ 128 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRITGF-------------TSPRYIHFLSDE--KAYVTQIWDYRIFIINPKTYEITGYIECPDMDM 128 (328)
T ss_dssp TEEEEEETTTCCEEEEEECC-------------SSEEEEEEEETT--EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCT
T ss_pred CEEEEEECcccEEEEEcCCC-------------CCCcEEEEeCCC--eEEEEECCCCeEEEEECCCCeEEEEEEcCCccc
Confidence 67999999999987665310 123222233355 477777 6788999994 66666555543200
Q ss_pred ---eeceeEEEeecCCCCeEEEEEeC--CCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecC-----
Q 003012 510 ---IQGAVVAADINDDGKIELVTTDT--HGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLS----- 578 (857)
Q Consensus 510 ---i~ss~~vaD~DGDG~~DLvv~~~--~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~----- 578 (857)
....+++ + +| -|++++. ++.+.+++. +++..+..... .....+. ++.||+ +++++..
T Consensus 129 ~~~~p~~i~~-~---~~--~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~---~~~dG~--l~v~~~~~~~~~ 196 (328)
T 3dsm_A 129 ESGSTEQMVQ-Y---GK--YVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLV---MDKYNK--MWTITDGGYEGS 196 (328)
T ss_dssp TTCBCCCEEE-E---TT--EEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCE---ECTTSE--EEEEBCCBCTTC
T ss_pred cCCCcceEEE-E---CC--EEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceE---EcCCCC--EEEEECCCccCC
Confidence 2334444 2 23 4666663 678899986 56665554432 2223333 356675 6666542
Q ss_pred ------CcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcc
Q 003012 579 ------GNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETS 652 (857)
Q Consensus 579 ------G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~ 652 (857)
+.++.++..+++....+.... +. .+.-.-++. |+ ..+++.+. .+++++..++...........
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~~~~~~~-g~---~p~~la~~~----d~-~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~ 265 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEKQFKFKL-GD---WPSEVQLNG----TR-DTLYWINN--DIWRMPVEADRVPVRPFLEFR 265 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEEEEECCT-TC---CCEEEEECT----TS-CEEEEESS--SEEEEETTCSSCCSSCSBCCC
T ss_pred ccccCCceEEEEECCCCeEEEEEecCC-CC---CceeEEEec----CC-CEEEEEcc--EEEEEECCCCceeeeeeecCC
Confidence 679999988887664433221 11 122222331 22 24566554 788888766543211110000
Q ss_pred eeeEEEEeecCCCCccEEEEe-----cCCcEEEEeCCC
Q 003012 653 YSMVLADNVDGGDDLDLIVTT-----MNGNVFCFSTPA 685 (857)
Q Consensus 653 ~s~~~a~DlDGDG~~DLvv~t-----~~G~V~~~~~~~ 685 (857)
...+...-+|.++. .|+++. .++.|++|+..+
T Consensus 266 ~~~p~gi~vdp~~g-~lyva~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 266 DTKYYGLTVNPNNG-EVYVADAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp SSCEEEEEECTTTC-CEEEEECTTSSSEEEEEEECTTC
T ss_pred CCceEEEEEcCCCC-eEEEEcccccccCCEEEEECCCC
Confidence 12233334665332 377775 467899998753
No 114
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.55 E-value=4.7 Score=46.60 Aligned_cols=200 Identities=13% Similarity=0.083 Sum_probs=117.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCC---CcEEEEecCC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTH---GNVAAWTAEG 543 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~---G~l~~~~~~G 543 (857)
...+.+..||. -|+.++.++.|.+++- +++......+. .....+....+..||..=+..+... +.+.+|+ .|
T Consensus 62 v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~--~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd-~~ 137 (611)
T 1nr0_A 62 TTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TG 137 (611)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-TC
T ss_pred eEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeec--ccCCceEEEEECCCCCEEEEEECCCCceeEEEEee-CC
Confidence 45667788885 3666777889999984 44432222221 1123456667788887544443322 3566665 33
Q ss_pred CeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeE
Q 003012 544 KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623 (857)
Q Consensus 544 ~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~D 623 (857)
...-. . ......+....|..||..-|+.++.++.+.+|+..+++....+.. -...+....+.. || .-
T Consensus 138 ~~~~~--l-~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-----H~~~V~~v~fsp----dg-~~ 204 (611)
T 1nr0_A 138 TSNGN--L-TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-----HTKFVHSVRYNP----DG-SL 204 (611)
T ss_dssp CBCBC--C-CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-----CSSCEEEEEECT----TS-SE
T ss_pred CCcce--e-cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-----ccCceEEEEECC----CC-CE
Confidence 32211 1 112234556778888766688888899999999766654432211 123444555653 33 35
Q ss_pred EEEEecCCeEEEEcCCCCceEEEEeCC-----cceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 624 IVTTSFDGYLYLIDGPTSCADVVDIGE-----TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 624 Lvv~s~dG~ly~~dg~~g~~~~i~~g~-----~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
|+.++.++.+.+++..++.....-... .....+....+..||.. |+.++.++.|.+|+...
T Consensus 205 las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~-l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVAT 270 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE-EEEEETTSEEEEEETTT
T ss_pred EEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE-EEEEeCCCeEEEEeCCC
Confidence 778889999999987665433221010 11123555568888863 77778999999999753
No 115
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.46 E-value=1.3 Score=48.66 Aligned_cols=205 Identities=7% Similarity=0.001 Sum_probs=117.4
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCC-ce-eeeee-ee-ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC-
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHG-KI-REKFP-LE-MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE- 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG-~~-~~~~~-~~-~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~- 542 (857)
+....++.+|..-|+.++.+|.|.+++-.. .. .+... .. .......+....+..++..-++.+..++.+.+|+..
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~ 263 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRN 263 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 344567777765677778889999998432 21 11110 00 011122355555666555667778889999999863
Q ss_pred C---CeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC-CeecccccccCCccccceEEEeccCCCCC
Q 003012 543 G---KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG-SKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 543 G---~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G-~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
+ ....... .....+....++.+|..=++++..+|.|.+|+..++ ..+..+.. . ..++.-..+..
T Consensus 264 ~~~~~~~~~~~---~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h---~~~v~~i~~sp---- 331 (430)
T 2xyi_A 264 NNTSKPSHTVD---AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--H---KDEIFQVQWSP---- 331 (430)
T ss_dssp SCSSSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--C---SSCEEEEEECS----
T ss_pred CCCCcceeEee---cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--C---CCCEEEEEECC----
Confidence 3 2333322 122345566777777655777888999999997653 22222211 1 22344445542
Q ss_pred CCCeEEEEEecCCeEEEEcCCCCc------------eEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTSC------------ADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g~------------~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
++..-+++++.+|.+.+++-.... ...+..-......+....++.+|..=|+.++.+|.|.+|+..
T Consensus 332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 332 HNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 444557788888888777644311 011111111112345556788876557777889999999864
No 116
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.43 E-value=3.6 Score=44.26 Aligned_cols=202 Identities=12% Similarity=0.123 Sum_probs=112.4
Q ss_pred CCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeec-cceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC--CCeeEEE
Q 003012 474 DGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM-AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE--GKGIWEQ 549 (857)
Q Consensus 474 DGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~-g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~--G~~~W~~ 549 (857)
..++..-|+.++.++.|.+++ .+|+....+.... ......+....++.....-++.++.++.+.+|+.. +......
T Consensus 166 ~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~ 245 (380)
T 3iz6_a 166 VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245 (380)
T ss_dssp CSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE
T ss_pred ecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE
Confidence 334444577777788888888 4666543332111 11122344445544222346777888999999863 3332221
Q ss_pred ccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCC--ccccceEEEeccCCCCCCCCeEEEEE
Q 003012 550 HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHG--RVMNQVLLVDLTKRGEKSKGLTIVTT 627 (857)
Q Consensus 550 ~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g--~~~s~~~v~DlDgDg~gDG~~DLvv~ 627 (857)
.. ....+....+..||.. |+.++.++.+.+|+..+|..+..+...... .....+....+.. +| .-|+++
T Consensus 246 ~~---h~~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g-~~l~~g 316 (380)
T 3iz6_a 246 HG---HEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI----SG-RLLFAG 316 (380)
T ss_dssp CC---CSSCCCEEEECTTSSE-EEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS----SS-SEEEEE
T ss_pred CC---cCCCeEEEEEecCCCe-EEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECC----CC-CEEEEE
Confidence 11 1123334456666653 677778999999998888765433222111 0111122333432 22 357788
Q ss_pred ecCCeEEEEcCCCCceEE-EEe-CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 628 SFDGYLYLIDGPTSCADV-VDI-GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 628 s~dG~ly~~dg~~g~~~~-i~~-g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
..+|.+++++...+.... +.. .......+....+..||.. |+.++.+|.|.+|...+
T Consensus 317 ~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSA-LCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSE-EEEECTTSCEEEEECCS
T ss_pred ECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCE-EEEeeCCCCEEEEecCC
Confidence 889999999876554332 211 0111122344457888875 77788999999998643
No 117
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=95.41 E-value=3 Score=46.95 Aligned_cols=201 Identities=14% Similarity=0.101 Sum_probs=115.8
Q ss_pred cEEEecCCCCCccEEEEeeC----CeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-C
Q 003012 468 PTVVDLDGDGNLDILVGTSF----GLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~----G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~ 542 (857)
+....+..||.. +++++.+ +.|++++ .++....+.. ....+....+..+|..-++.++.++.+.+|+. +
T Consensus 119 v~~~~~s~~~~~-l~~~~~~~~~~~~v~~~d-~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~ 192 (615)
T 1pgu_A 119 ISDISWDFEGRR-LCVVGEGRDNFGVFISWD-SGNSLGEVSG----HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP 192 (615)
T ss_dssp EEEEEECTTSSE-EEEEECCSSCSEEEEETT-TCCEEEECCS----CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT
T ss_pred EEEEEEeCCCCE-EEEeccCCCCccEEEEEE-CCCcceeeec----CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC
Confidence 455667788864 4444444 5677777 4544333221 22345667788888877888999999999986 4
Q ss_pred CCeeEEEccccccccCCEEEecCCC-CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 543 GKGIWEQHLKSLVTQGPSIGDVDGD-GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 543 G~~~W~~~~~~~~~~~vavgDlDGD-G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
++..............+....+..| |. -|++++.++.+.+|+..+|+.+..+... ......++....+. + .
T Consensus 193 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~v~~~~~~-~-----~ 264 (615)
T 1pgu_A 193 FKFSASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDD-QEPVQGGIFALSWL-D-----S 264 (615)
T ss_dssp BEEEEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBT-TBCCCSCEEEEEES-S-----S
T ss_pred cceeeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCCEeEEeccc-ccccCCceEEEEEc-C-----C
Confidence 4444332211110114455667777 54 3677778999999998888876544210 00111233333342 1 2
Q ss_pred eEEEEEecCCeEEEEcCCCCceEE-EEeCCc-ceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 622 LTIVTTSFDGYLYLIDGPTSCADV-VDIGET-SYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 622 ~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~-~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
.-+++++.+|.+.+++-.++.... +..... ....+...-+. +| .-+++++.+|.+++|+..
T Consensus 265 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 265 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN-GRIISLSLDGTLNFYELG 327 (615)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET-TEEEEEETTSCEEEEETT
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC-CeEEEEECCCCEEEEECC
Confidence 457788889999999877654332 332211 11111111122 33 247777888999998864
No 118
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=95.40 E-value=3.3 Score=43.69 Aligned_cols=227 Identities=13% Similarity=0.117 Sum_probs=119.4
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeCCCce--eeeeeee--
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHHGKI--REKFPLE-- 506 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~dG~~--~~~~~~~-- 506 (857)
.+.|+.+|.++|++...... ..+..|.-.-++.||. |+++.. +++|+.++.+|+. +..+...
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~-----------~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~ 134 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGK-----------NLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQ 134 (329)
T ss_dssp SCCEEEECTTTCCEEEEECT-----------TTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTB
T ss_pred CCcEEEEECCCCeEEeccCC-----------CccCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCC
Confidence 46799999998987543211 1123455556778886 677654 5689999988873 3222110
Q ss_pred cc---ceeceeEEEeecC-CCCeEEEEEe--CCCcEEEEecCCCeeEEEccccc-------cccCCEEEecCCCCcccEE
Q 003012 507 MA---EIQGAVVAADIND-DGKIELVTTD--THGNVAAWTAEGKGIWEQHLKSL-------VTQGPSIGDVDGDGHSDVV 573 (857)
Q Consensus 507 ~g---~i~ss~~vaD~DG-DG~~DLvv~~--~~G~l~~~~~~G~~~W~~~~~~~-------~~~~vavgDlDGDG~~DLv 573 (857)
.+ .....+.-.-++. +| .|++++ .++.+..|+.+|...+....... ....+.-.-++.|+. .|+
T Consensus 135 ~g~~~~~~~~P~~ia~~~~~g--~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-~l~ 211 (329)
T 3fvz_A 135 PGSDQNHFCQPTDVAVEPSTG--AVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-QLC 211 (329)
T ss_dssp CCCSTTCCSSEEEEEECTTTC--CEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-EEE
T ss_pred CCCCccccCCCcEEEEeCCCC--eEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-EEE
Confidence 00 1122354455665 55 467776 36789999988887765432211 111233333445521 366
Q ss_pred EEec-CCcEEEEECCCCCeecccccccCCccccc-----eEEEeccCCCCCCCCeEEEEE-ecCCeEEEEcCCCCceE-E
Q 003012 574 VPTL-SGNIYVLSGKDGSKVRPYPYRTHGRVMNQ-----VLLVDLTKRGEKSKGLTIVTT-SFDGYLYLIDGPTSCAD-V 645 (857)
Q Consensus 574 v~t~-~G~I~~l~~~~G~~~~~~~~~~~g~~~s~-----~~v~DlDgDg~gDG~~DLvv~-s~dG~ly~~dg~~g~~~-~ 645 (857)
++.. ++.|..|+..+|+.+..+.....+..... -.+.+.++ . ++++ .....+++++..++... .
T Consensus 212 v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g------~--~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 212 VADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNG------K--PYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEEC------C--CCTTCSCCCCEEEEETTTCCEEEE
T ss_pred EEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCC------C--EEeccCCCcEEEEEEcCCCeEEEE
Confidence 6654 67899999877887654432222111111 11122221 1 1111 12235666664444332 2
Q ss_pred EEeCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCC
Q 003012 646 VDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTP 684 (857)
Q Consensus 646 i~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~ 684 (857)
+.........+...-++.|| .|+++. .++.|..|+..
T Consensus 284 ~~~~~~~~~~p~~ia~~~dG--~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 284 FKPVRKHFDMPHDIVASEDG--TVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ECCSSSCCSSEEEEEECTTS--EEEEEESSSCCEEEEEEE
T ss_pred EcCCCCccCCeeEEEECCCC--CEEEEECCCCEEEEEeCC
Confidence 22112223334444478888 577774 56788888753
No 119
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=95.33 E-value=0.58 Score=48.56 Aligned_cols=193 Identities=9% Similarity=0.094 Sum_probs=106.8
Q ss_pred EecCCCCCccEEEEeeCCeEEEEeC-CCcee-eeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeE
Q 003012 471 VDLDGDGNLDILVGTSFGLFYVLDH-HGKIR-EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIW 547 (857)
Q Consensus 471 aDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~-~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W 547 (857)
..+..||. -|++++.++.|.+++. .+... ...... .....+....+..||..-|+++..++.+.+|+. .+....
T Consensus 17 ~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 93 (342)
T 1yfq_A 17 IKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93 (342)
T ss_dssp EEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE
T ss_pred EEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE
Confidence 34444543 3566677888888883 44311 001111 112234455566667546888888999999987 554432
Q ss_pred EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCC---------CCeecccccccCCccccceEEEeccCCCCC
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKD---------GSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~---------G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
.... ......+....+.. + .-++.++.++.+.+|+..+ ++.+..+. ....+....++.
T Consensus 94 ~~~~-~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~---- 160 (342)
T 1yfq_A 94 ALTN-NEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK------VKNKIFTMDTNS---- 160 (342)
T ss_dssp ECBS-CCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS------SCCCEEEEEECS----
T ss_pred eccc-cCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe------eCCceEEEEecC----
Confidence 2111 00222333334444 2 2366677788999988654 44332222 123444555653
Q ss_pred CCCeEEEEEecCCeEEEEcCCC-CceE--EEEeCCcceeeEEEEeecC-CCCccEEEEecCCcEEEEeCCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPT-SCAD--VVDIGETSYSMVLADNVDG-GDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~-g~~~--~i~~g~~~~s~~~a~DlDG-DG~~DLvv~t~~G~V~~~~~~~ 685 (857)
++ +++++.++.+++++-.. +... ...... ...+....+.. ||. -|++++.+|.+.+|....
T Consensus 161 ~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~-~l~~~~~dg~i~i~~~~~ 225 (342)
T 1yfq_A 161 SR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGL--KYQIRDVALLPKEQE-GYACSSIDGRVAVEFFDD 225 (342)
T ss_dssp SE---EEEEESTTEEEEEESSCCTTCCCEEEECSC--SSCEEEEEECSGGGC-EEEEEETTSEEEEEECCT
T ss_pred Cc---EEEEeCCCeEEEEECCccccccceeeecCC--CCceeEEEECCCCCC-EEEEEecCCcEEEEEEcC
Confidence 22 88999999999998765 3321 121111 11233344666 664 377788999999988654
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.31 E-value=2.3 Score=45.85 Aligned_cols=219 Identities=12% Similarity=0.012 Sum_probs=116.8
Q ss_pred eEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEe-eCCeEEEEeC-CCceeeeeeeec-cce
Q 003012 434 AIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT-SFGLFYVLDH-HGKIREKFPLEM-AEI 510 (857)
Q Consensus 434 ~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~-~~G~Lyv~~~-dG~~~~~~~~~~-g~i 510 (857)
.++.++..+++......+.... .+....+..++ .++++. .++.|++++. +|+.....+... ...
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~-----------~~~~~~~s~~~--~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 168 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGF-----------QPKSVRFIDNT--RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKK 168 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSS-----------CBCCCEESSSS--EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTT
T ss_pred EEEEECCCCCcceEEEEEcCCC-----------CceEEEEeCCC--eEEEEeCCCCeEEEEECCCCeEeeecCccccccc
Confidence 6888888766444433332110 01112233322 455554 3557999984 566553222211 011
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCCcEEEEECCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGKD 588 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~l~~~~ 588 (857)
...+....+..+|. -++.+..++.+.+|+. +++..+..... ...+....++.||.. ++++. .++.|++|+..+
T Consensus 169 ~~~v~~~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 169 LGFVETISIPEHNE-LWVSQMQANAVHVFDLKTLAYKATVDLT---GKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp CCEEEEEEEGGGTE-EEEEEGGGTEEEEEETTTCCEEEEEECS---SSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred CCceeEEEEcCCCE-EEEEECCCCEEEEEECCCceEEEEEcCC---CCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 12333444555553 3455556789999986 55655554321 123344456666654 44444 678999999887
Q ss_pred CCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe--------cCCeEEEEcCCCCceEEE-EeCCcceeeEEEE
Q 003012 589 GSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS--------FDGYLYLIDGPTSCADVV-DIGETSYSMVLAD 659 (857)
Q Consensus 589 G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s--------~dG~ly~~dg~~g~~~~i-~~g~~~~s~~~a~ 659 (857)
|+....++. . ..+....++. +|. -+++++ .+|.+++++..++..... .... .+...
T Consensus 244 ~~~~~~~~~--~----~~~~~~~~~~----~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~----~~~~~ 308 (433)
T 3bws_A 244 KLEIRKTDK--I----GLPRGLLLSK----DGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG----NKRHI 308 (433)
T ss_dssp TEEEEECCC--C----SEEEEEEECT----TSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE----CEEEE
T ss_pred CcEEEEecC--C----CCceEEEEcC----CCC-EEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC----CcceE
Confidence 876544322 1 1233344442 333 455555 367899998776644332 1111 22333
Q ss_pred eecCCCCccEEEEecCCcEEEEeCCC
Q 003012 660 NVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 660 DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.+..||..=++.+..++.+++|+..+
T Consensus 309 ~~~~~g~~l~~~~~~~~~v~v~d~~~ 334 (433)
T 3bws_A 309 VSGNTENKIYVSDMCCSKIEVYDLKE 334 (433)
T ss_dssp EECSSTTEEEEEETTTTEEEEEETTT
T ss_pred EECCCCCEEEEEecCCCEEEEEECCC
Confidence 46777765344457889999999753
No 121
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=95.27 E-value=3.3 Score=42.92 Aligned_cols=220 Identities=14% Similarity=0.089 Sum_probs=123.6
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
.+.|.+||..+++........ ........+..||. -|+.++.++.|.+++- ++..... .+. .-
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h------------~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~-~~~--~h 139 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAH------------PDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQ-TFE--GH 139 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECC------------SSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEE-EEC--CC
T ss_pred CCEEEEEECCCCcEEEEEeCC------------CCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhh-hhc--cc
Confidence 367899999988875543211 11244556777775 3666777888998884 4422211 111 11
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCC--CCcccEEEEecCCcEEEEECC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDG--DGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDG--DG~~DLvv~t~~G~I~~l~~~ 587 (857)
...+....++.++..-|+.++.++.+.+|+. .+......... ....+...++.. |+. -|+.++.++.|.+|+..
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~-~l~s~s~D~~i~iWd~~ 216 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKP-YMITASDDLTIKIWDYQ 216 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCEEEEEECCSTTCC-EEEEEETTSEEEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC--CcCcEEEEEEEEcCCCC-EEEEEcCCCeEEEEeCC
Confidence 2335556676544446788888999999986 44444433221 112233444433 332 26667789999999988
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCC
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDD 666 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~ 666 (857)
+++.+..+... ...+...-+.. + ..-|+.++.+|.+.+++..++.... +..+.. .+....+..+|.
T Consensus 217 ~~~~~~~~~~h-----~~~v~~~~~~p----~-~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 283 (304)
T 2ynn_A 217 TKSCVATLEGH-----MSNVSFAVFHP----T-LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE---RSWCIATHPTGR 283 (304)
T ss_dssp TTEEEEEEECC-----SSCEEEEEECS----S-SSEEEEEETTSCEEEEETTTCCEEEEECCSSS---SEEEEEECTTCG
T ss_pred CCccceeeCCC-----CCCEEEEEECC----C-CCEEEEEcCCCeEEEEECCCCceeeeccCCCc---cEEEEEECCCCC
Confidence 77765433221 12333344542 2 2357888899999999977654433 222211 122233556666
Q ss_pred ccEEEEecCCcEEEEeC
Q 003012 667 LDLIVTTMNGNVFCFST 683 (857)
Q Consensus 667 ~DLvv~t~~G~V~~~~~ 683 (857)
..++++..+..+.+|..
T Consensus 284 ~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 284 KNYIASGFDNGFTVLSL 300 (304)
T ss_dssp GGCEEEEETTEEEEEEC
T ss_pred ceEEEEecCCceEEEEe
Confidence 55455544555555554
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.24 E-value=1.4 Score=52.59 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=119.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCC--CCccEEEEeeCCeEEEEeC-CCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGD--GNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGD--G~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~ 509 (857)
|.|.+|+..+++......+. .+ ...+....+..+ |. -|+.++.+|.|++++- +++........ .
T Consensus 31 g~I~vwd~~~~~~~~~~~l~---------~h-~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~~~~~~--~ 97 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLT---------GH-EGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENGRWSQIAVHA--V 97 (753)
T ss_dssp TEEEEEEEETTEEEEEEEEC---------CC-SSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEETTEEEEEEEEC--C
T ss_pred CcEEEEecCCCCCccceecc---------CC-cCceEEEEecCCCCCC-EEEEEeCCCeEEEEECCCCccccccccc--C
Confidence 66888877644333222221 11 123445566655 43 4666777899999884 44321111111 1
Q ss_pred eeceeEEEeecCCC-CeEEEEEeCCCcEEEEecCCC-e--eEEEccccccccCCEEEecCC-------------CCcccE
Q 003012 510 IQGAVVAADINDDG-KIELVTTDTHGNVAAWTAEGK-G--IWEQHLKSLVTQGPSIGDVDG-------------DGHSDV 572 (857)
Q Consensus 510 i~ss~~vaD~DGDG-~~DLvv~~~~G~l~~~~~~G~-~--~W~~~~~~~~~~~vavgDlDG-------------DG~~DL 572 (857)
....+....+..++ ..-+++++.+|.+.+|+.... . ..... .....+....+.. || .-+
T Consensus 98 h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~---~~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l 173 (753)
T 3jro_A 98 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID---AHAIGVNSASWAPATIEEDGEHNGTKES-RKF 173 (753)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE---CCSSCEEEEEECCCC---------CGGG-CCE
T ss_pred CCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEee---cCCCceEEEEecCcccccccccccCCCC-CEE
Confidence 22345556666662 235777888899999986332 1 11111 0111222222332 22 237
Q ss_pred EEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCC--CeEEEEEecCCeEEEEcCCCCceEE---EE
Q 003012 573 VVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSK--GLTIVTTSFDGYLYLIDGPTSCADV---VD 647 (857)
Q Consensus 573 vv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG--~~DLvv~s~dG~ly~~dg~~g~~~~---i~ 647 (857)
++++.+|.|..|+..++........... .-..++....++. ++ ..-+++++.+|.+++++-.++.... ..
T Consensus 174 ~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp----~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 248 (753)
T 3jro_A 174 VTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSP----TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL 248 (753)
T ss_dssp EEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECC----CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBS
T ss_pred EEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEecc----CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEe
Confidence 7777899999998765543211111111 1123444455552 22 4568888889988887755432111 10
Q ss_pred eCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 648 IGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 648 ~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
........+....+..||.. |++++.+|.|++|+...
T Consensus 249 ~~~~~~~~v~~l~~spdg~~-l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 249 KEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCSSCCCCEEECTTTCC-EEEECSSSCEECCBCCS
T ss_pred ccCCCCCceEEEEEcCCCCE-EEEEcCCCEEEEEecCC
Confidence 00011112333346777764 77788999999999753
No 123
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.22 E-value=0.9 Score=49.06 Aligned_cols=203 Identities=10% Similarity=0.059 Sum_probs=112.1
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe-
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG- 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~- 545 (857)
+..+.+..||. -|+.++.++.|.+++. +++....+...... +....+..||.. |+.++.++.+.+|+.....
T Consensus 69 V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~-las~~~d~~v~iw~~~~~~~ 142 (380)
T 3iz6_a 69 VYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQS-VACGGLDSACSIFNLSSQAD 142 (380)
T ss_dssp EEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSE-EEECCSSSCCEEEECCCCSS
T ss_pred EEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCE-EEEeeCCCcEEEEECCCCcc
Confidence 44556677775 3777788999999984 66554433332221 233345667754 6677778888888753211
Q ss_pred ---eE--EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCC
Q 003012 546 ---IW--EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSK 620 (857)
Q Consensus 546 ---~W--~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG 620 (857)
.. ..... .....+....+..++..-|+.++.++.+.+|+..+|..+..+.......-...+....++. ..
T Consensus 143 ~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~ 217 (380)
T 3iz6_a 143 RDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS----LN 217 (380)
T ss_dssp CCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS----SS
T ss_pred ccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec----CC
Confidence 00 00000 0111122223333444458888889999999988887654332211111122333344431 12
Q ss_pred CeEEEEEecCCeEEEEcCCCC-c-eEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 621 GLTIVTTSFDGYLYLIDGPTS-C-ADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 621 ~~DLvv~s~dG~ly~~dg~~g-~-~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
..-++.++.++.+.+++.... . ...+ .+.. ..+....+..||.. |+.++.+|.+.+|+...
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~--~~v~~v~~~p~~~~-l~s~s~D~~i~lwd~~~ 280 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRAVRTY-HGHE--GDINSVKFFPDGQR-FGTGSDDGTCRLFDMRT 280 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCCCEEE-CCCS--SCCCEEEECTTSSE-EEEECSSSCEEEEETTT
T ss_pred CCEEEEEECCCeEEEEECCCCCcceEEE-CCcC--CCeEEEEEecCCCe-EEEEcCCCeEEEEECCC
Confidence 235778888999988886532 2 2222 1111 11223346777763 77778999999999754
No 124
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=95.22 E-value=0.83 Score=53.14 Aligned_cols=103 Identities=20% Similarity=0.420 Sum_probs=74.9
Q ss_pred eEEEEECCC---CceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeC------CeEEEEe-CCCceeeee
Q 003012 434 AIVVFNLDT---KQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSF------GLFYVLD-HHGKIREKF 503 (857)
Q Consensus 434 ~v~a~d~~t---G~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~------G~Lyv~~-~dG~~~~~~ 503 (857)
.+|++|..+ .+++|+.... ....-++.++.|.++-+. +|+.-+|+++.. ..||+++ .+|..+|.+
T Consensus 165 ~~yALDVT~P~~p~~LWe~~~~----~~~~LG~t~s~P~I~~~~-~g~w~~vfG~GY~~~~~~~~Lyv~d~~tG~li~~i 239 (570)
T 3hx6_A 165 GLFALDVTDPANIKLLWEIGVD----QEPDLGYSFPKPTVARLH-NGKWAVVTGNGYSSMNDKAALLIIDMETGAITRKL 239 (570)
T ss_dssp EEEEEECSSGGGCEEEEEEETT----TCTTCCBCCSCCEEEECT-TSSEEEEEECCBSCTTCCEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCCCceeEEECCC----CccccCccccCCEEEEec-CCCEEEEEccccCCCCCccEEEEEECCCCceEEEE
Confidence 588887654 7789998621 112235778899999887 577777777642 3699999 689999877
Q ss_pred eeec----cceeceeEEEeecCCCCeEE-EEEeCCCcEEEEec
Q 003012 504 PLEM----AEIQGAVVAADINDDGKIEL-VTTDTHGNVAAWTA 541 (857)
Q Consensus 504 ~~~~----g~i~ss~~vaD~DGDG~~DL-vv~~~~G~l~~~~~ 541 (857)
.... .+..+.+++.|.|+||..|. ++++..|+++-|+.
T Consensus 240 ~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~GnlWRfDl 282 (570)
T 3hx6_A 240 EVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGNLWRFDL 282 (570)
T ss_dssp EECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSEEEEEEC
T ss_pred ecCCCCccCCccccceEEecCCCCceeEEEEEeCCCcEEEEEc
Confidence 6542 12346788999999999985 45677899999876
No 125
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=95.16 E-value=6.7 Score=45.85 Aligned_cols=197 Identities=14% Similarity=0.093 Sum_probs=120.1
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI 546 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~ 546 (857)
+..+.+..||. -|+.++.++.|.+++ .+|.....+... ...+....+..||.. |+.++.++.+.+|+..+...
T Consensus 433 v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~~~h----~~~v~~~~~s~~~~~-l~s~s~D~~i~iwd~~~~~~ 506 (694)
T 3dm0_A 433 VEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRFVGH----TKDVLSVAFSLDNRQ-IVSASRDRTIKLWNTLGECK 506 (694)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEE
T ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEECCCCcceeEEeCC----CCCEEEEEEeCCCCE-EEEEeCCCEEEEEECCCCcc
Confidence 44566777875 366677789999998 466544333222 223556667777754 77788899999998876655
Q ss_pred EEEccc-cccccCCEEEecCCCCcc-cEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 547 WEQHLK-SLVTQGPSIGDVDGDGHS-DVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 547 W~~~~~-~~~~~~vavgDlDGDG~~-DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
+..... ......+....+..++.. -++.++.++.|.+|+..+++....+.. + ...+....+.. +| .-|
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~--h---~~~v~~v~~sp----dg-~~l 576 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG--H---TGYVSTVAVSP----DG-SLC 576 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC--C---SSCEEEEEECT----TS-SEE
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC--C---CCCEEEEEEeC----CC-CEE
Confidence 543321 122234555666666643 366677789999999877765433221 1 22344455553 23 357
Q ss_pred EEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 625 VTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 625 vv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+.++.+|.+.+++-.++..... +.. ...+...-+..||. ++++..++.|.+|+..+
T Consensus 577 ~sg~~Dg~i~iwd~~~~~~~~~-~~~--~~~v~~~~~sp~~~--~l~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 577 ASGGKDGVVLLWDLAEGKKLYS-LEA--NSVIHALCFSPNRY--WLCAATEHGIKIWDLES 632 (694)
T ss_dssp EEEETTSBCEEEETTTTEEEEC-CBC--SSCEEEEEECSSSS--EEEEEETTEEEEEETTT
T ss_pred EEEeCCCeEEEEECCCCceEEE-ecC--CCcEEEEEEcCCCc--EEEEEcCCCEEEEECCC
Confidence 7888899999888766543221 111 11233334666664 66666777899998754
No 126
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.13 E-value=3.6 Score=47.55 Aligned_cols=201 Identities=16% Similarity=0.209 Sum_probs=122.9
Q ss_pred ccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCC
Q 003012 467 SPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGK 544 (857)
Q Consensus 467 spavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~ 544 (857)
.+..+.+..||..-|+.++.++.+.+++. +++....+. .-...+....+..||.. |+.++.++.+.+|+. +|+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~----~H~~~V~~v~fspdg~~-las~s~D~~i~lwd~~~g~ 223 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG----EHTKFVHSVRYNPDGSL-FASTGGDGTIVLYNGVDGT 223 (611)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC----CCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCC
T ss_pred CceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec----cccCceEEEEECCCCCE-EEEEECCCcEEEEECCCCc
Confidence 35567788888766888888999998884 444332221 12234666778888863 677788999999985 665
Q ss_pred eeEEEcccc----ccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCC
Q 003012 545 GIWEQHLKS----LVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSK 620 (857)
Q Consensus 545 ~~W~~~~~~----~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG 620 (857)
..-...... .....+....+..||. -|+.++.++.+.+|+..+|+....++.. ...........+++
T Consensus 224 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~------ 294 (611)
T 1nr0_A 224 KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVG--TRIEDQQLGIIWTK------ 294 (611)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECC--SSGGGCEEEEEECS------
T ss_pred EeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCC--CCccceeEEEEEcC------
Confidence 543321100 1223455566777775 3667778899999998878765443321 11111222222232
Q ss_pred CeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 621 GLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 621 ~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.-++.++.+|.+.+++...+.......+.. ..+....+..||.. |+.++.+|.|.+|+..+
T Consensus 295 -~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~--~~v~~l~~spdg~~-l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 295 -QALVSISANGFINFVNPELGSIDQVRYGHN--KAITALSSSADGKT-LFSADAEGHINSWDIST 355 (611)
T ss_dssp -SCEEEEETTCCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSE-EEEEETTSCEEEEETTT
T ss_pred -CEEEEEeCCCcEEEEeCCCCCcceEEcCCC--CCEEEEEEeCCCCE-EEEEeCCCcEEEEECCC
Confidence 247778888888888866554332222211 22334447778864 77788999999999754
No 127
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.06 E-value=4.7 Score=43.51 Aligned_cols=199 Identities=19% Similarity=0.232 Sum_probs=112.9
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~ 545 (857)
...+.+..||. -|+.++.++.|.+++. +++....+.. -...+....+..||. -|+.++.++.+.+|+. +|..
T Consensus 126 v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~ 199 (393)
T 1erj_A 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQC 199 (393)
T ss_dssp EEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEE
T ss_pred EEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEEEcc----CCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCee
Confidence 34566778886 3667777889999984 5554332221 122355666777775 4777888899999986 5554
Q ss_pred eEEEccccccccCCEEEecCC-CCcccEEEEecCCcEEEEECCCCCeecccccccC--CccccceEEEeccCCCCCCCCe
Q 003012 546 IWEQHLKSLVTQGPSIGDVDG-DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTH--GRVMNQVLLVDLTKRGEKSKGL 622 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDG-DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~--g~~~s~~~v~DlDgDg~gDG~~ 622 (857)
....... ..+....+.. ||. -|+.++.++.+.+|+..+|..+..+..... ..-...+....+.. +| .
T Consensus 200 ~~~~~~~----~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~----~g-~ 269 (393)
T 1erj_A 200 SLTLSIE----DGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR----DG-Q 269 (393)
T ss_dssp EEEEECS----SCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT----TS-S
T ss_pred EEEEEcC----CCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC----CC-C
Confidence 4433221 1233344443 554 366677899999999888876543321110 11123344455543 23 3
Q ss_pred EEEEEecCCeEEEEcCCCCceE------------EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 623 TIVTTSFDGYLYLIDGPTSCAD------------VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 623 DLvv~s~dG~ly~~dg~~g~~~------------~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
-|+.++.++.+.+++-...... ..-.+.. ..+....+..||. -|+.++.+|.|++|+...
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~-~l~sgs~D~~v~iwd~~~ 341 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDE-YILSGSKDRGVLFWDKKS 341 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCS--SCEEEEEECGGGC-EEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCC-EEEEEeCCCeEEEEECCC
Confidence 5788888998888875432110 0101111 1133334566664 367778999999999743
No 128
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=94.97 E-value=3.4 Score=41.37 Aligned_cols=192 Identities=17% Similarity=0.173 Sum_probs=99.6
Q ss_pred ccEEEecCCCCCccEEE-E-eeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCC
Q 003012 467 SPTVVDLDGDGNLDILV-G-TSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGK 544 (857)
Q Consensus 467 spavaDlDGDG~~DIvV-g-~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~ 544 (857)
.|.-.-++.||. +++ + ...+.|+.++..+.....+... . ...+...-++.||. |++++.++.++.|+.+|.
T Consensus 25 ~p~~i~~~~~g~--l~v~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~p~~i~~~~~g~--l~v~~~~~~i~~~d~~~~ 97 (270)
T 1rwi_B 25 SPSGVAVDSAGN--VYVTSEGMYGRVVKLATGSTGTTVLPFN--G-LYQPQGLAVDGAGT--VYVTDFNNRVVTLAAGSN 97 (270)
T ss_dssp CEEEEEECTTCC--EEEEECSSSCEEEEECC-----EECCCC--S-CCSCCCEEECTTCC--EEEEETTTEEEEECTTCS
T ss_pred CccceEECCCCC--EEEEccCCCCcEEEecCCCcccceEeeC--C-cCCcceeEECCCCC--EEEEcCCCEEEEEeCCCc
Confidence 455555677875 677 6 3467898888654433222211 1 11222333466775 777776778999988776
Q ss_pred eeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCCCeecccccccCCccccce-EEEeccCCCCCCCCe
Q 003012 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDGSKVRPYPYRTHGRVMNQV-LLVDLTKRGEKSKGL 622 (857)
Q Consensus 545 ~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~-~v~DlDgDg~gDG~~ 622 (857)
......... ...+.-.-++.||. ++++.. ++.|+.+...+..... . .......+. +..|- +|.
T Consensus 98 ~~~~~~~~~--~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~--~--~~~~~~~p~~i~~~~------~g~- 162 (270)
T 1rwi_B 98 NQTVLPFDG--LNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTV--L--PFTGLNDPDGVAVDN------SGN- 162 (270)
T ss_dssp CCEECCCCS--CSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEE--C--CCCSCCSCCCEEECT------TCC-
T ss_pred eEeeeecCC--cCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEe--e--ccccCCCceeEEEeC------CCC-
Confidence 554332211 11233334556674 777754 5788888643322211 1 111111111 12222 343
Q ss_pred EEEEEec-CCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEec-CCcEEEEeCCC
Q 003012 623 TIVTTSF-DGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTM-NGNVFCFSTPA 685 (857)
Q Consensus 623 DLvv~s~-dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~-~G~V~~~~~~~ 685 (857)
+++++. ++.+++++..+.......... ...+...-++.|| .|++++. ++.|++|+..+
T Consensus 163 -l~v~~~~~~~i~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~g--~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 163 -VYVTDTDNNRVVKLEAESNNQVVLPFTD--ITAPWGIAVDEAG--TVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp -EEEEEGGGTEEEEECTTTCCEEECCCSS--CCSEEEEEECTTC--CEEEEETTTSCEEEECTTC
T ss_pred -EEEEECCCCEEEEEecCCCceEeecccC--CCCceEEEECCCC--CEEEEECCCCcEEEEcCCC
Confidence 666654 568888887665433221111 1223333477787 4777764 67899888644
No 129
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=94.93 E-value=2 Score=51.25 Aligned_cols=209 Identities=13% Similarity=0.067 Sum_probs=111.5
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCC-CceeeeeeeeccceeceeEEEeecCC--CCeEEEEEeCCCcEEEEecCCC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHH-GKIREKFPLEMAEIQGAVVAADINDD--GKIELVTTDTHGNVAAWTAEGK 544 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~d-G~~~~~~~~~~g~i~ss~~vaD~DGD--G~~DLvv~~~~G~l~~~~~~G~ 544 (857)
+....++.||. -|+.++.+|.|.+++.. ++......+. .....+....+..+ |. -|+.++.+|.+.+|+....
T Consensus 12 V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~-~l~s~s~Dg~I~vwd~~~~ 87 (753)
T 3jro_A 12 IHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGT-ILASCSYDGKVLIWKEENG 87 (753)
T ss_dssp EEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCS-EEEEEETTSCEEEEEEETT
T ss_pred eEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCC-EEEEEeCCCeEEEEECCCC
Confidence 45566777775 36777788999888843 2222111111 11234555666655 43 5777788899999986433
Q ss_pred e-eEEEccccccccCCEEEecCCC--CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCC-----
Q 003012 545 G-IWEQHLKSLVTQGPSIGDVDGD--GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRG----- 616 (857)
Q Consensus 545 ~-~W~~~~~~~~~~~vavgDlDGD--G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg----- 616 (857)
. .-.... ......+....+..+ |. -+++++.+|.|.+|+..++........... ...+....+....
T Consensus 88 ~~~~~~~~-~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~---~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 88 RWSQIAVH-AVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAH---AIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEEEEEEE-CCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCCEEEECC---SSCEEEEEECCCC-----
T ss_pred cccccccc-cCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcceeEeecC---CCceEEEEecCccccccc
Confidence 2 111111 112233445556655 33 377777889999999766643222211111 1222233332100
Q ss_pred ---CCCCCeEEEEEecCCeEEEEcCCCCceE--EEEeCCcceeeEEEEeecCCC--CccEEEEecCCcEEEEeCCC
Q 003012 617 ---EKSKGLTIVTTSFDGYLYLIDGPTSCAD--VVDIGETSYSMVLADNVDGGD--DLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 617 ---~gDG~~DLvv~s~dG~ly~~dg~~g~~~--~i~~g~~~~s~~~a~DlDGDG--~~DLvv~t~~G~V~~~~~~~ 685 (857)
......-+++++.+|.+++++-.++... ....-......+....+..++ ..-|+.++.+|.|.+|+...
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 0001245788888998888775443221 111111111224444577773 34477788999999998754
No 130
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.73 E-value=5 Score=42.24 Aligned_cols=193 Identities=13% Similarity=0.104 Sum_probs=111.7
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeE
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIW 547 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W 547 (857)
....+..||. -++.++.++.|.+++ .+|+....+... ...+....+..||. -|+.++.++.+.+|+..+....
T Consensus 80 ~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~h----~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~ 153 (343)
T 2xzm_R 80 SDLALSQENC-FAISSSWDKTLRLWDLRTGTTYKRFVGH----QSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKF 153 (343)
T ss_dssp EEEEECSSTT-EEEEEETTSEEEEEETTSSCEEEEEECC----CSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEE
T ss_pred EEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEEEcCC----CCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCcee
Confidence 3445666764 356667788999998 466654433322 23455667777876 4677788999999988765544
Q ss_pred EEccccccccCCEEEecCCCCc---------ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGH---------SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~---------~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
...........+....+..++. .-++.++.++.|.+|+. ++.....+. .. ..++....+..
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~--~h---~~~v~~~~~s~---- 223 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK--AH---ESNVNHLSISP---- 223 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEE--CC---SSCEEEEEECT----
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEc--Cc---cccceEEEECC----
Confidence 3322111222333444444442 23666778899999984 343332211 11 12344455553
Q ss_pred CCCeEEEEEecCCeEEEEcCCC-CceE-EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPT-SCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~-g~~~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
+| .-|++++.+|.+.+++-.. .... ....+.. +...-+..||. ++++..++.+.+|+..
T Consensus 224 ~g-~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~----v~~v~~sp~~~--~la~~~d~~v~iw~~~ 284 (343)
T 2xzm_R 224 NG-KYIATGGKDKKLLIWDILNLTYPQREFDAGST----INQIAFNPKLQ--WVAVGTDQGVKIFNLM 284 (343)
T ss_dssp TS-SEEEEEETTCEEEEEESSCCSSCSEEEECSSC----EEEEEECSSSC--EEEEEESSCEEEEESS
T ss_pred CC-CEEEEEcCCCeEEEEECCCCcccceeecCCCc----EEEEEECCCCC--EEEEECCCCEEEEEeC
Confidence 23 3578888999999888632 2221 2222211 33334677764 5666778889999864
No 131
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.66 E-value=11 Score=47.02 Aligned_cols=222 Identities=11% Similarity=0.098 Sum_probs=129.4
Q ss_pred ccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEE-EEeeCCeEEEEe-CCCceeeeeeeecc
Q 003012 431 VAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDIL-VGTSFGLFYVLD-HHGKIREKFPLEMA 508 (857)
Q Consensus 431 ~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIv-Vg~~~G~Lyv~~-~dG~~~~~~~~~~g 508 (857)
..+.|.+||..+++........ ........+..++..-++ .++.++.|.+++ .+|+........
T Consensus 677 ~d~~v~vwd~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h-- 742 (1249)
T 3sfz_A 677 ADKKVKIWDSATGKLVHTYDEH------------SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH-- 742 (1249)
T ss_dssp TTSEEEEEETTTCCEEEEEECC------------SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC--
T ss_pred CCCeEEEEECCCCceEEEEcCC------------CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC--
Confidence 3467999999988876554321 112344556555544444 455678899998 466544333221
Q ss_pred ceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccc----------ccccCCEEEecCCCCcccEEEEec
Q 003012 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKS----------LVTQGPSIGDVDGDGHSDVVVPTL 577 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~----------~~~~~vavgDlDGDG~~DLvv~t~ 577 (857)
...+....+..||. -+++++.+|.+.+|+. ++.......... .....+....+..||. .++...
T Consensus 743 --~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~l~~~~ 817 (1249)
T 3sfz_A 743 --TNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD--KIIVAA 817 (1249)
T ss_dssp --SSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSS--EEEEEE
T ss_pred --CCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCC--EEEEEc
Confidence 23455566777776 4777788899999986 454443322111 0111223344566665 444445
Q ss_pred CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEE
Q 003012 578 SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVL 657 (857)
Q Consensus 578 ~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~ 657 (857)
++.+..|+..++........... ..+....+.. ++ .-+++++.+|.+.+++..++.....-.+.. ..+.
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~----~~v~~~~~sp----~~-~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~ 886 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHH----STIQYCDFSP----YD-HLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVH 886 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSS----SCCCEEEECS----ST-TEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEE
T ss_pred CCcEEEEEecCCCceeEEcCCCC----CceEEEEEcC----CC-CEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceE
Confidence 78999999887776544322211 2233334432 22 357788888988888877654433222211 2234
Q ss_pred EEeecCCCCccEEEEecCCcEEEEeC
Q 003012 658 ADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 658 a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
...+..||.. |+.++.+|.+.+|+.
T Consensus 887 ~v~~spdg~~-l~s~s~dg~v~vw~~ 911 (1249)
T 3sfz_A 887 GVMFSPDGSS-FLTASDDQTIRVWET 911 (1249)
T ss_dssp EEEECTTSSE-EEEEETTSCEEEEEH
T ss_pred EEEECCCCCE-EEEEeCCCeEEEEEc
Confidence 4457778764 778889999999985
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.65 E-value=4.7 Score=41.56 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=115.9
Q ss_pred ceEEEEECCCCce-EEEEeccCCCCccccccccccccEE-EecCCCCCccEEEEeeC-C--eEEEEeC-CCceeeeeeee
Q 003012 433 GAIVVFNLDTKQV-KWTTDLDLSTDNASFRAYIYSSPTV-VDLDGDGNLDILVGTSF-G--LFYVLDH-HGKIREKFPLE 506 (857)
Q Consensus 433 G~v~a~d~~tG~i-~W~~~l~ls~~~~~~~~~~~sspav-aDlDGDG~~DIvVg~~~-G--~Lyv~~~-dG~~~~~~~~~ 506 (857)
+.|+.+|..+++. ....... ..+.. ..++.||.. +++.... + .|++++. +|+.....+..
T Consensus 62 ~~i~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~-l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 127 (331)
T 3u4y_A 62 QTLVQIETQLEPPKVVAIQEG-------------QSSMADVDITPDDQF-AVTVTGLNHPFNMQSYSFLKNKFISTIPIP 127 (331)
T ss_dssp CEEEEEECSSSSCEEEEEEEC-------------SSCCCCEEECTTSSE-EEECCCSSSSCEEEEEETTTTEEEEEEECC
T ss_pred CeEEEEECCCCceeEEecccC-------------CCCccceEECCCCCE-EEEecCCCCcccEEEEECCCCCeEEEEECC
Confidence 5689999988886 3332211 12223 446677764 3343333 2 7999984 56554433322
Q ss_pred ccceeceeEEEeecCCCCeEEEEE-eCCCc-EEEEecC--CCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCCcE
Q 003012 507 MAEIQGAVVAADINDDGKIELVTT-DTHGN-VAAWTAE--GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNI 581 (857)
Q Consensus 507 ~g~i~ss~~vaD~DGDG~~DLvv~-~~~G~-l~~~~~~--G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I 581 (857)
..+...-++.||+. ++++ ...+. +.+|+.+ |...............+.-..++.||.. ++++. .++.+
T Consensus 128 -----~~~~~~~~spdg~~-l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~-l~v~~~~~~~v 200 (331)
T 3u4y_A 128 -----YDAVGIAISPNGNG-LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF-AFVANLIGNSI 200 (331)
T ss_dssp -----TTEEEEEECTTSSC-EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE-EEEEETTTTEE
T ss_pred -----CCccceEECCCCCE-EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE-EEEEeCCCCeE
Confidence 22445567788876 4444 44467 8888653 3222111100012233455667888864 45544 57889
Q ss_pred EEEECCCCCe---ecccccccCCccccceEEEeccCCCCCCCCeEEEEEe-cCCeEEEEcCCCCceEEEE---eC----C
Q 003012 582 YVLSGKDGSK---VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS-FDGYLYLIDGPTSCADVVD---IG----E 650 (857)
Q Consensus 582 ~~l~~~~G~~---~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s-~dG~ly~~dg~~g~~~~i~---~g----~ 650 (857)
++|+..+|+. +...+. +.....+ .+. .||.. +++++ .++.+++++..++....+. .. .
T Consensus 201 ~v~d~~~~~~~~~~~~~~~---~~~~~~~---~~s----pdg~~-l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 201 GILETQNPENITLLNAVGT---NNLPGTI---VVS----RDGST-VYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEEECSSTTSCEEEEEEEC---SSCCCCE---EEC----TTSSE-EEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEEECCCCcccceeeeccC---CCCCceE---EEC----CCCCE-EEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence 9999888876 433321 1111122 232 23433 44444 3567888887776553221 11 1
Q ss_pred cceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
..........|..||+. |++++ .++.|.+|+...
T Consensus 270 ~~~~~~~~~~~spdg~~-l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 270 RPLFGANQMALNKTETK-LFISANISRELKVFTISG 304 (331)
T ss_dssp GGGTTCCCEEECTTSSE-EEEEETTTTEEEEEETTS
T ss_pred CCcccccceEECCCCCE-EEEecCCCCcEEEEEecC
Confidence 11110011247788875 55554 466899999754
No 133
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=94.64 E-value=2.8 Score=47.26 Aligned_cols=197 Identities=15% Similarity=0.080 Sum_probs=110.5
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCC-CCeEEEEEeCCCcEEEEec-CCC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDD-GKIELVTTDTHGNVAAWTA-EGK 544 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGD-G~~DLvv~~~~G~l~~~~~-~G~ 544 (857)
+....+..||..-++.++.++.+.+++. +++....+....+ ....+....+..| |. -|+++..++.+.+|+. +|+
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK-QGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC-TTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTTCC
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC-CCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCCCC
Confidence 4556778888766888888899999984 5554433322211 0014566677777 54 4777788999999985 666
Q ss_pred eeEEEcc-ccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEec-cCCCCCCCCe
Q 003012 545 GIWEQHL-KSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDL-TKRGEKSKGL 622 (857)
Q Consensus 545 ~~W~~~~-~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~Dl-DgDg~gDG~~ 622 (857)
....... .......+....+. ||. -++.++.++.+.+|+..+++....+.... ......+...-+ + ..
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~ 310 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVATG-------NG 310 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEEE-------TT
T ss_pred EeEEecccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeCC-------CC
Confidence 5544311 00122334445565 553 36667778999999988887765443321 111112211111 2 13
Q ss_pred EEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 623 TIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 623 DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
-+++++.+|.+++++...+.....-.+ ....+....+ .+ |+.++.+|.+.+|+.
T Consensus 311 ~l~~~~~~g~i~~~d~~~~~~~~~~~~--~~~~v~~~~~-~~----l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 311 RIISLSLDGTLNFYELGHDEVLKTISG--HNKGITALTV-NP----LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEETTSCEEEEETTEEEEEEEECC--CSSCEEEEET-TT----TEEEETTSCEEETTT
T ss_pred eEEEEECCCCEEEEECCCCcEEEEEeC--CCCCEEEEEe-cC----cEEECCCCeEEEEEc
Confidence 577888888888888665332221111 1112222334 33 566666666666653
No 134
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=94.60 E-value=5.7 Score=42.28 Aligned_cols=193 Identities=12% Similarity=0.113 Sum_probs=114.7
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecC--CCCeEEEEEeCCCcEEEEec-CCC
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADIND--DGKIELVTTDTHGNVAAWTA-EGK 544 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DG--DG~~DLvv~~~~G~l~~~~~-~G~ 544 (857)
..+.+..|+. -|+.++.++.|.+++ .+|+....+... ...+...++.- +| .-|+.++.++.+.+|+. +|+
T Consensus 158 ~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h----~~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~ 231 (354)
T 2pbi_B 158 SACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGH----GADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQ 231 (354)
T ss_dssp EEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECC----SSCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCC
T ss_pred EEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCC----CCCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 3455666664 477778889999998 567655443322 12344555543 33 35777888999999986 565
Q ss_pred eeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 545 GIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 545 ~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
....... ....+....+..||. -|+.++.++.+.+|+...+.....+.. ......+....+.. +| .-|
T Consensus 232 ~~~~~~~---h~~~v~~v~~~p~~~-~l~s~s~D~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~s~----~g-~~l 299 (354)
T 2pbi_B 232 CVQAFET---HESDVNSVRYYPSGD-AFASGSDDATCRLYDLRADREVAIYSK---ESIIFGASSVDFSL----SG-RLL 299 (354)
T ss_dssp EEEEECC---CSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECC---TTCCSCEEEEEECT----TS-SEE
T ss_pred EEEEecC---CCCCeEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcC---CCcccceeEEEEeC----CC-CEE
Confidence 4433221 122334455666664 366777889999999776654432211 11112333445542 22 357
Q ss_pred EEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 625 VTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 625 vv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
+++..++.+++++-..+.....-.+. ...+....+..||.. |+.++.+|.|.+|.
T Consensus 300 ~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~-l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTA-FCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSC-EEEEETTSEEEEEC
T ss_pred EEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCE-EEEEcCCCCEEecC
Confidence 78888999999987655433221121 122444457788864 77888999999884
No 135
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=94.59 E-value=0.97 Score=48.79 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=108.0
Q ss_pred EeeCCeEEEEeC--CCceeeeeeeeccceeceeEEEeecC-CCCeEEEEEeCCCcEEEEec-CCCe-------eEEEccc
Q 003012 484 GTSFGLFYVLDH--HGKIREKFPLEMAEIQGAVVAADIND-DGKIELVTTDTHGNVAAWTA-EGKG-------IWEQHLK 552 (857)
Q Consensus 484 g~~~G~Lyv~~~--dG~~~~~~~~~~g~i~ss~~vaD~DG-DG~~DLvv~~~~G~l~~~~~-~G~~-------~W~~~~~ 552 (857)
++.+|.|++++. .|......... ..-...+....++. ++ .-|+.++.++.+.+|+. ++.. .....
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~-~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-- 128 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHND-NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-- 128 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCT-TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE--
T ss_pred EcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCC-CEEEEEeCCCeEEEEEccCCCCccccCCceEEec--
Confidence 355678888884 33221111111 11233466677777 44 45777788899999986 3321 11111
Q ss_pred cccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCe
Q 003012 553 SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGY 632 (857)
Q Consensus 553 ~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ 632 (857)
.....+....+..+|..-++.++.++.|.+|+..+++....+.... ....+....++. +| .-|++++.+|.
T Consensus 129 -~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~----~~-~~l~~~~~d~~ 199 (402)
T 2aq5_A 129 -GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSR----DG-ALICTSCRDKR 199 (402)
T ss_dssp -CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT---CCSCEEEEEECT----TS-SCEEEEETTSE
T ss_pred -CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC---CCCceEEEEECC----CC-CEEEEEecCCc
Confidence 1223455566777775557777889999999988887654431011 123444455542 22 35788889999
Q ss_pred EEEEcCCCCceEEEE-eCCcceeeEEEEeecCCCCccEEEE---ecCCcEEEEeCCCCCC
Q 003012 633 LYLIDGPTSCADVVD-IGETSYSMVLADNVDGGDDLDLIVT---TMNGNVFCFSTPAPHH 688 (857)
Q Consensus 633 ly~~dg~~g~~~~i~-~g~~~~s~~~a~DlDGDG~~DLvv~---t~~G~V~~~~~~~~~~ 688 (857)
+++++-.++.....- .+.... .+...-+..||.. |+++ +.++.|.+|+......
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 200 VRVIEPRKGTVVAEKDRPHEGT-RPVHAVFVSEGKI-LTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEEETTTTEEEEEEECSSCSS-SCCEEEECSTTEE-EEEEECTTCCEEEEEEETTBCSS
T ss_pred EEEEeCCCCceeeeeccCCCCC-cceEEEEcCCCcE-EEEeccCCCCceEEEEcCccccC
Confidence 999997766543322 222211 1122235566652 3334 4789999999865433
No 136
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=94.58 E-value=5.6 Score=42.07 Aligned_cols=230 Identities=10% Similarity=0.027 Sum_probs=121.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|..|+..+++......+.. + .........+..||. -|+.++.++.+.+++. .+.......+. .-.
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~--------~-h~~~v~~~~~sp~g~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~--~h~ 105 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSE--------G-HQRTVRKVAWSPCGN-YLASASFDATTCIWKKNQDDFECVTTLE--GHE 105 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECS--------S-CSSCEEEEEECTTSS-EEEEEETTSCEEEEEECCC-EEEEEEEC--CCS
T ss_pred CeEEEEEcCCCcceeeeeecc--------c-cCCcEEEEEECCCCC-EEEEEECCCcEEEEEccCCCeEEEEEcc--CCC
Confidence 567788877665332222110 1 112345567778875 3666777888888773 34322111221 112
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEE-EccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWE-QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~-~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+....+..||. -|+.++.++.+.+|+......+. ..........+....+..||. -|+.++.++.+.+|+..++.
T Consensus 106 ~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~ 183 (345)
T 3fm0_A 106 NEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDD 183 (345)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTE
T ss_pred CCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCC
Confidence 3455666777775 37777888999999864332221 111111222344455666664 36777788999888865554
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC--Cc---------eEE--E-EeCCcceeeE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT--SC---------ADV--V-DIGETSYSMV 656 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~--g~---------~~~--i-~~g~~~~s~~ 656 (857)
.......... ...+.-..++. +| .-|+.++.++.+.+++... .. ..+ + .........+
T Consensus 184 ~~~~~~~~~h---~~~v~~l~~sp----~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 255 (345)
T 3fm0_A 184 WVCCATLEGH---ESTVWSLAFDP----SG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTI 255 (345)
T ss_dssp EEEEEEECCC---SSCEEEEEECT----TS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCE
T ss_pred EEEEEEecCC---CCceEEEEECC----CC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcE
Confidence 3211111111 22344445543 23 3577888899777665211 00 001 1 1111111123
Q ss_pred EEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 657 LADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 657 ~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
....+..+|.. |+.++.++.+.+|....
T Consensus 256 ~~v~~~~~~~~-l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 256 YDIAWCQLTGA-LATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEECTTTCC-EEEEETTSCEEEEEECT
T ss_pred EEEEEecCCCE-EEEEeCCCeEEEEEeCC
Confidence 44456677653 77788899999998643
No 137
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.56 E-value=6.5 Score=42.77 Aligned_cols=216 Identities=13% Similarity=0.089 Sum_probs=121.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.|..||..+++...... .+ ...+....+..||. -|+.++.++.|.+++ .+|.....+... .
T Consensus 172 ~~i~iwd~~~~~~~~~~~-----------~h-~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h----~ 234 (410)
T 1vyh_C 172 MTIKLWDFQGFECIRTMH-----------GH-DHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGH----R 234 (410)
T ss_dssp SCCCEEETTSSCEEECCC-----------CC-SSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECC----S
T ss_pred CeEEEEeCCCCceeEEEc-----------CC-CCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCC----C
Confidence 557777777665432211 11 12244556666764 366677889999998 466654433322 1
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCC-------------------ccc
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDG-------------------HSD 571 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG-------------------~~D 571 (857)
..+....++.||. -|+.++.++.+.+|+. ++...-..... ...+....+..++ ..-
T Consensus 235 ~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 235 EWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKECKAELREH---RHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCC---SSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred ccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCceeeEecCC---CceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 2345566777875 3667778899999986 34332221110 0111112222211 123
Q ss_pred EEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce-EEEEeCC
Q 003012 572 VVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA-DVVDIGE 650 (857)
Q Consensus 572 Lvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~-~~i~~g~ 650 (857)
|+.++.++.|.+|+..+|..+..+.. . ...+....+.. + ..-|+.++.+|.+++++..++.. ..+....
T Consensus 311 l~sgs~D~~i~iwd~~~~~~~~~~~~--h---~~~v~~v~~~~----~-g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTGMCLMTLVG--H---DNWVRGVLFHS----G-GKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEEC--C---SSCEEEEEECS----S-SSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred EEEEeCCCeEEEEECCCCceEEEEEC--C---CCcEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 66677889999999887876543321 1 12233333432 2 23577888999999998765432 2222111
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
..+....+..+|.. |+.++.+|.|.+|+.
T Consensus 381 ---~~v~~l~~~~~~~~-l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 381 ---HFVTSLDFHKTAPY-VVTGSVDQTVKVWEC 409 (410)
T ss_dssp ---SCEEEEEECSSSSC-EEEEETTSEEEEEC-
T ss_pred ---CcEEEEEEcCCCCE-EEEEeCCCcEEEEeC
Confidence 12444557777754 777889999999863
No 138
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=94.50 E-value=6.4 Score=42.44 Aligned_cols=223 Identities=14% Similarity=0.149 Sum_probs=118.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
+.|.+||..+++......- + ...+....+..||. -|+.++.++.+.+++ .+|+....+...
T Consensus 145 ~~i~iwd~~~~~~~~~~~~-----------h-~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~----- 206 (393)
T 1erj_A 145 RLIRIWDIENRKIVMILQG-----------H-EQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIE----- 206 (393)
T ss_dssp SCEEEEETTTTEEEEEECC-----------C-SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECS-----
T ss_pred CeEEEEECCCCcEEEEEcc-----------C-CCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcC-----
Confidence 6688899888776433211 1 12244566777775 466777788999998 456544333221
Q ss_pred ceeEEEeecC-CCCeEEEEEeCCCcEEEEec-CCCeeEEEccc----cccccCCEEEecCCCCcccEEEEecCCcEEEEE
Q 003012 512 GAVVAADIND-DGKIELVTTDTHGNVAAWTA-EGKGIWEQHLK----SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLS 585 (857)
Q Consensus 512 ss~~vaD~DG-DG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~----~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~ 585 (857)
..+....+.. ||. -|+.++.++.+.+|+. +|...-..... ......+....+..||.. |+.++.++.|.+|+
T Consensus 207 ~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~d~~v~~wd 284 (393)
T 1erj_A 207 DGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS-VVSGSLDRSVKLWN 284 (393)
T ss_dssp SCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE-EEEEETTSEEEEEE
T ss_pred CCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEE
Confidence 2234444544 554 4677788899999986 45443332111 112234455667777753 66777889999998
Q ss_pred CCCCCeecccccccCCc-------cccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEE
Q 003012 586 GKDGSKVRPYPYRTHGR-------VMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLA 658 (857)
Q Consensus 586 ~~~G~~~~~~~~~~~g~-------~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a 658 (857)
-.++...........+. -...+....+.. + ..-|+.++.++.+++++..++.....-.+.. ..+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~-~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~ 357 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ----N-DEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVIS 357 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECG----G-GCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECC----C-CCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEE
Confidence 65443211100000000 011222233331 1 2357788899999999877665433222211 11222
Q ss_pred EeecC------CCCccEEEEecCCcEEEEeC
Q 003012 659 DNVDG------GDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 659 ~DlDG------DG~~DLvv~t~~G~V~~~~~ 683 (857)
..+.. ||. -|+.++.+|.|.+|+.
T Consensus 358 v~~~~~~~~~p~~~-~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 358 VAVANGSSLGPEYN-VFATGSGDCKARIWKY 387 (393)
T ss_dssp EEECSSCTTCTTCE-EEEEEETTSEEEEEEE
T ss_pred EEecCCcCcCCCCC-EEEEECCCCcEEECcc
Confidence 22333 332 2566688999999985
No 139
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=94.34 E-value=4.7 Score=44.29 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=94.4
Q ss_pred CCeEEEEe--CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEe
Q 003012 487 FGLFYVLD--HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGD 563 (857)
Q Consensus 487 ~G~Lyv~~--~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgD 563 (857)
++.|.+++ .+|+.+....... .....+++.-++|||.. |+-++.++.+.+|+. +|+.+............+...-
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~-~~v~~l~fs~~~g~~~~-LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~va 233 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMP-PEETILTFAEVQGMQEA-LLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKA 233 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECC-CSSCEEEEEEEETSTTE-EEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCC-CceeeEEeeccCCCCce-EEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEE
Confidence 45554444 6787665444432 22234566666777742 444578899999987 6876655432111111221111
Q ss_pred cCCCCc-----------ccEEEEecCCcEEEEECCCCCeecccccc-cCCccccceEEEeccCCCCCCCCeEEEEEecCC
Q 003012 564 VDGDGH-----------SDVVVPTLSGNIYVLSGKDGSKVRPYPYR-THGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDG 631 (857)
Q Consensus 564 lDGDG~-----------~DLvv~t~~G~I~~l~~~~G~~~~~~~~~-~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG 631 (857)
|..||. .++..+..++.+..|+..+|+.+..+... ..+.. ....-++++ ..-++.++.++
T Consensus 234 fSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~lsg~~s-------g~~lASgS~Dg 305 (356)
T 2w18_A 234 YSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRFLEGDVK-------DHCAAAILTSG 305 (356)
T ss_dssp EEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCEEEEEEE-------TTEEEEEETTS
T ss_pred ECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-ceeEccccC-------CCEEEEEcCCC
Confidence 223343 23444556677888888777654321110 01110 011222221 12467777899
Q ss_pred eEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 632 YLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 632 ~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
.+.+.|-.++.....-.+.... ......|..||.. |+.++.|+.|++|+.
T Consensus 306 TIkIWDl~tGk~l~tL~gH~~~-vvs~vafSPDG~~-LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 306 TIAIWDLLLGQCTALLPPVSDQ-HWSFVKWSGTDSH-LLAGQKDGNIFVYHY 355 (356)
T ss_dssp CEEEEETTTCSEEEEECCC--C-CCCEEEECSSSSE-EEEECTTSCEEEEEE
T ss_pred cEEEEECCCCcEEEEecCCCCC-eEEEEEECCCCCE-EEEEECCCcEEEecC
Confidence 9999998877544322222111 1112247788875 777889999999973
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.29 E-value=6 Score=41.31 Aligned_cols=225 Identities=10% Similarity=0.068 Sum_probs=111.7
Q ss_pred EEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee---CCeEEEEeC-CCceeeeeeeeccce
Q 003012 435 IVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS---FGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 435 v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~---~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
++.+|..+|+........ ....|...-++.||+ |++.+. ++.|++++- +|+........ ..
T Consensus 20 v~~~d~~tg~~~~~~~~~-----------~~~~p~~~a~spdg~--l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~--~~ 84 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLA-----------ATQNPTYLALSAKDC--LYSVDKEDDEGGIAAWQIDGQTAHKLNTVV--AP 84 (347)
T ss_dssp EEEEETTTTEEEEEEEEE-----------ECSCCCCEEECTTCE--EEEEEEETTEEEEEEEEEETTEEEEEEEEE--EE
T ss_pred EEEEcCCCCeEEEeeeee-----------ccCCcceEEEccCCe--EEEEEecCCCceEEEEEecCCcEEEeeeee--cC
Confidence 667788888765433221 012344556778887 777665 367888884 44432211111 01
Q ss_pred eceeEEEeecCCCCeEEEEEe-CCCcEEEEec--CCCeeEEEcccc--c------cccCCEEEecCCCCcccEEEEec-C
Q 003012 511 QGAVVAADINDDGKIELVTTD-THGNVAAWTA--EGKGIWEQHLKS--L------VTQGPSIGDVDGDGHSDVVVPTL-S 578 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~-~~G~l~~~~~--~G~~~W~~~~~~--~------~~~~vavgDlDGDG~~DLvv~t~-~ 578 (857)
...+...-++.||+. |++++ .++.+.+|+. +|.......... . ....+...-++.||. ++++.. +
T Consensus 85 ~~~p~~~a~spdg~~-l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~ 161 (347)
T 3hfq_A 85 GTPPAYVAVDEARQL-VYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDLGS 161 (347)
T ss_dssp SCCCSEEEEETTTTE-EEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEETTT
T ss_pred CCCCEEEEECCCCCE-EEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeCCC
Confidence 123344456778875 44454 5677888875 444332222111 0 111244456788887 777654 5
Q ss_pred CcEEEEECC-CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEE--cCCCCceEEE-EeC--Cc-
Q 003012 579 GNIYVLSGK-DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLI--DGPTSCADVV-DIG--ET- 651 (857)
Q Consensus 579 G~I~~l~~~-~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~--dg~~g~~~~i-~~g--~~- 651 (857)
+.+++|+.. +|+........... ...+.-.-++ .||..-+++...++.++++ +..++....+ .+. ..
T Consensus 162 ~~v~~~~~~~~g~~~~~~~~~~~~--g~~p~~~~~s----pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 235 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSVLTMEA--GFGPRHLVFS----PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD 235 (347)
T ss_dssp TEEEEEEECTTSCEEEEEEEECCT--TCCEEEEEEC----TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT
T ss_pred CEEEEEEECCCCcEEEeeeEEcCC--CCCCceEEEC----CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC
Confidence 678888865 56543211111110 1112223343 2444333334445655544 4433433221 111 11
Q ss_pred --ceeeEEEEeecCCCCccEEEE-ecCCcEEEEeCC
Q 003012 652 --SYSMVLADNVDGGDDLDLIVT-TMNGNVFCFSTP 684 (857)
Q Consensus 652 --~~s~~~a~DlDGDG~~DLvv~-t~~G~V~~~~~~ 684 (857)
....+...-|..||+. |+++ ..++.|.+|+..
T Consensus 236 ~~~~~~~~~i~~spdG~~-l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 236 YTAHNGAAAIRLSHDGHF-LYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CCSCCEEEEEEECTTSCE-EEEEEETTTEEEEEEEC
T ss_pred CCCCCcceeEEECCCCCE-EEEEeCCCCEEEEEEEC
Confidence 1122444457888874 4444 457888888853
No 141
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=94.24 E-value=6.7 Score=48.11 Aligned_cols=199 Identities=12% Similarity=0.045 Sum_probs=118.3
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCee
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGI 546 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~ 546 (857)
+....++.||. =|++++.+|.|++|+..+.... .... ....+...-|.. |. -|+.++.++.+.+|+. +|+..
T Consensus 20 V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~-~~~~---~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~ 92 (902)
T 2oaj_A 20 PIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVV-IKLE---DRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVL 92 (902)
T ss_dssp EEEEEEETTTT-EEEEEETTSEEEEECSTTCEEE-EECS---SCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEE
T ss_pred cEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEE-EEcC---CCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEE
Confidence 45666778885 3667788899999985443221 1111 112344444555 55 5777888899999987 56555
Q ss_pred EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeeccccc-------ccCCccccceEEEeccCCCCCC
Q 003012 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPY-------RTHGRVMNQVLLVDLTKRGEKS 619 (857)
Q Consensus 547 W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~-------~~~g~~~s~~~v~DlDgDg~gD 619 (857)
.... ....+....++.||.. |++++.+|.|.+|+..++... .+.. .....-..++....++. +
T Consensus 93 ~~~~----~~~~V~~v~~sp~g~~-l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp----~ 162 (902)
T 2oaj_A 93 TTVF----VPGKITSIDTDASLDW-MLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQWNP----R 162 (902)
T ss_dssp EEEE----CSSCEEEEECCTTCSE-EEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEEET----T
T ss_pred EEEc----CCCCEEEEEECCCCCE-EEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEEcc----C
Confidence 4432 1224556677777753 777888999999998776642 1111 00111112333334432 2
Q ss_pred CCeEEEEEecCCeEEEEcCCCCceEEEEeCC----------------cceeeEEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 620 KGLTIVTTSFDGYLYLIDGPTSCADVVDIGE----------------TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 620 G~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~----------------~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
+..-++++..+|.+ +++-.++.....-.+. .....+....|..||. -|+.++.+|.|.+|+.
T Consensus 163 ~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 163 DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDA 240 (902)
T ss_dssp EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEET
T ss_pred CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEEC
Confidence 23457788888988 8887765433221111 0012355556888876 3777789999999997
Q ss_pred CC
Q 003012 684 PA 685 (857)
Q Consensus 684 ~~ 685 (857)
..
T Consensus 241 ~~ 242 (902)
T 2oaj_A 241 NS 242 (902)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 142
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=94.21 E-value=5.9 Score=40.87 Aligned_cols=222 Identities=11% Similarity=-0.009 Sum_probs=118.0
Q ss_pred ceEEEEECCC-CceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccce
Q 003012 433 GAIVVFNLDT-KQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~t-G~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
|.|..|+..+ ++..-.. +. . ....+....+..||. -|+.++.+|.|.+++- +++..... . .
T Consensus 64 g~i~iw~~~~~~~~~~~~-~~---------~-h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~-~----~ 126 (368)
T 3mmy_A 64 NDVRCWEVQDSGQTIPKA-QQ---------M-HTGPVLDVCWSDDGS-KVFTASCDKTAKMWDLSSNQAIQIA-Q----H 126 (368)
T ss_dssp SEEEEEEECTTSCEEEEE-EE---------E-CSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-E----C
T ss_pred CcEEEEEcCCCCceeEEE-ec---------c-ccCCEEEEEECcCCC-EEEEEcCCCcEEEEEcCCCCceeec-c----c
Confidence 6688888876 4332111 11 0 112345566777775 3667777899999984 45433211 1 1
Q ss_pred eceeEEEee--cCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECC
Q 003012 511 QGAVVAADI--NDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 511 ~ss~~vaD~--DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~ 587 (857)
...+....+ ..+|. -|+.++.++.+.+|+. +++......... .+...++..+ .++++..++.+..|+..
T Consensus 127 ~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 127 DAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPE----RCYCADVIYP---MAVVATAERGLIVYQLE 198 (368)
T ss_dssp SSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSS----CEEEEEEETT---EEEEEEGGGCEEEEECS
T ss_pred cCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCC----CceEEEecCC---eeEEEeCCCcEEEEEec
Confidence 123344444 55553 4677778899999985 566555443322 2223333332 46777778888888875
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeE-EEEEecCCeEEEEcCCCCce---EEEEeCCcc----------e
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT-IVTTSFDGYLYLIDGPTSCA---DVVDIGETS----------Y 653 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~D-Lvv~s~dG~ly~~dg~~g~~---~~i~~g~~~----------~ 653 (857)
.+.................+.+ -.+ .....+ +++++.+|.+.+++-..... ...-.+... .
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (368)
T 3mmy_A 199 NQPSEFRRIESPLKHQHRCVAI-FKD----KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDI 273 (368)
T ss_dssp SSCEEEEECCCSCSSCEEEEEE-EEC----TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEE
T ss_pred cccchhhhccccccCCCceEEE-ccc----CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccc
Confidence 5443221111111111111111 111 111222 78888899888887655421 111011100 0
Q ss_pred eeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 654 SMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 654 s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
..+....+..||.. |++++.+|.|.+|+...
T Consensus 274 ~~v~~~~~sp~~~~-l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 274 YAVNGIAFHPVHGT-LATVGSDGRFSFWDKDA 304 (368)
T ss_dssp CCEEEEEECTTTCC-EEEEETTSCEEEEETTT
T ss_pred cceEEEEEecCCCE-EEEEccCCeEEEEECCC
Confidence 02445567888864 78888999999999753
No 143
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.18 E-value=16 Score=45.65 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=126.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|..|+..+++........ ...+....+..||. -++.++.++.|.+++ .+|+....+....
T Consensus 637 ~~i~vw~~~~~~~~~~~~~h------------~~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~---- 699 (1249)
T 3sfz_A 637 KTLQVFKAETGEKLLDIKAH------------EDEVLCCAFSSDDS-YIATCSADKKVKIWDSATGKLVHTYDEHS---- 699 (1249)
T ss_dssp SCEEEEETTTCCEEEEECCC------------SSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECCS----
T ss_pred CeEEEEECCCCCEEEEeccC------------CCCEEEEEEecCCC-EEEEEeCCCeEEEEECCCCceEEEEcCCC----
Confidence 67899999988765543211 12345566777875 366677788999999 5777665544331
Q ss_pred ceeEEEeecCCCCe-EEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCC
Q 003012 512 GAVVAADINDDGKI-ELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDG 589 (857)
Q Consensus 512 ss~~vaD~DGDG~~-DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G 589 (857)
..+....+..++.. -++.++.++.+.+|+. +|........ ....+....+..||. -++.++.+|.+.+|+..++
T Consensus 700 ~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~---h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 700 EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG---HTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC---CSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGT
T ss_pred CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC---CCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCC
Confidence 23444455554433 4556677899999986 5554443321 222344455666765 3666778899999997766
Q ss_pred CeecccccccC--------CccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEe
Q 003012 590 SKVRPYPYRTH--------GRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADN 660 (857)
Q Consensus 590 ~~~~~~~~~~~--------g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~D 660 (857)
.....+..... ......+....+.. +|. -++++ .++.+++++..++.... +..+.. ..+....
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----dg~-~l~~~-~~~~v~~~d~~~~~~~~~~~~~~~--~~v~~~~ 847 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA----DGD-KIIVA-AKNKVLLFDIHTSGLLAEIHTGHH--STIQYCD 847 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCT----TSS-EEEEE-ETTEEEEEETTTCCEEEEEECSSS--SCCCEEE
T ss_pred cccceecccccccccCCccccccceEEEEEECC----CCC-EEEEE-cCCcEEEEEecCCCceeEEcCCCC--CceEEEE
Confidence 55433221110 00011122223332 333 23333 36778888866654433 222211 1223334
Q ss_pred ecCCCCccEEEEecCCcEEEEeCCC
Q 003012 661 VDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 661 lDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+..+|.. +++++.+|.+.+|+...
T Consensus 848 ~sp~~~~-l~~~~~dg~v~vwd~~~ 871 (1249)
T 3sfz_A 848 FSPYDHL-AVIALSQYCVELWNIDS 871 (1249)
T ss_dssp ECSSTTE-EEEECSSSCEEEEETTT
T ss_pred EcCCCCE-EEEEeCCCeEEEEEcCC
Confidence 6677764 67778889999998753
No 144
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=94.08 E-value=5.6 Score=40.08 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=112.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeCCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
+.|..++.. ++.... .+ .. ....|.-.-++.+|. ++++.. .+.|+.++.+|+.. .+..... .
T Consensus 41 ~~v~~~~~~-~~~~~~-~~--~~--------~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d~~g~~~-~~~~~~~--~ 103 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEF-EV--PT--------PDAKVMCLIVSSLGD--IWFTENGANKIGKLSKKGGFT-EYPLPQP--D 103 (300)
T ss_dssp TEEEEECTT-SCEEEE-EC--SS--------TTCCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEE-EEECSST--T
T ss_pred CeEEEECCC-CceEEE-EC--CC--------CCCcceeEEECCCCC--EEEEecCCCeEEEECCCCCeE-EecCCCC--C
Confidence 568888887 665421 11 10 012344444566764 677765 56899998777653 2322211 1
Q ss_pred ceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCC
Q 003012 512 GAVVAADINDDGKIELVTTDT-HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDG 589 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G 589 (857)
..+...-++.+|. ++++.. .+.++.++.+|+.... .... ....+.-.-++.+|. +++++. ++.++.++. +|
T Consensus 104 ~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~-~~~~-~~~~~~~i~~d~~g~--l~v~~~~~~~i~~~~~-~g 176 (300)
T 2qc5_A 104 SGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEY-DLPN-KGSYPAFITLGSDNA--LWFTENQNNSIGRITN-TG 176 (300)
T ss_dssp CCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEE-ECSS-TTCCEEEEEECTTSS--EEEEETTTTEEEEECT-TC
T ss_pred CCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEc-cCCC-CCCCceeEEECCCCC--EEEEecCCCeEEEECC-CC
Confidence 2233334456674 666665 5678888877654421 1111 112233344566775 777765 568888887 67
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
+... +.. ...... +.-.-++. +| .|++++. .+.++.++.. +.......... ...+...-++.+|.
T Consensus 177 ~~~~-~~~--~~~~~~-~~~i~~d~----~g--~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~-~~~~~~i~~d~~g~-- 242 (300)
T 2qc5_A 177 KLEE-YPL--PTNAAA-PVGITSGN----DG--ALWFVEIMGNKIGRITTT-GEISEYDIPTP-NARPHAITAGKNSE-- 242 (300)
T ss_dssp CEEE-EEC--SSTTCC-EEEEEECT----TS--SEEEEETTTTEEEEECTT-CCEEEEECSST-TCCEEEEEECSTTC--
T ss_pred cEEE-eeC--CCCCCC-cceEEECC----CC--CEEEEccCCCEEEEEcCC-CcEEEEECCCC-CCCceEEEECCCCC--
Confidence 6542 211 111111 22222331 23 3666665 4578888873 33333322211 12233334677776
Q ss_pred EEEEec-CCcEEEEeCC
Q 003012 669 LIVTTM-NGNVFCFSTP 684 (857)
Q Consensus 669 Lvv~t~-~G~V~~~~~~ 684 (857)
|++++. ++.|+.|+..
T Consensus 243 l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEEETTTTEEEEECTT
T ss_pred EEEeccCCCeEEEECCC
Confidence 788774 4788888863
No 145
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.93 E-value=3.1 Score=43.79 Aligned_cols=183 Identities=10% Similarity=0.017 Sum_probs=99.7
Q ss_pred EEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe-eEEEcccc-----
Q 003012 481 ILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG-IWEQHLKS----- 553 (857)
Q Consensus 481 IvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~-~W~~~~~~----- 553 (857)
++.++.+|.|++++ .+|+....... +.+.. +. +.. +++.++.++.+.+|+..+.. .|......
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~~--~~v~~-~~---~~~----~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTITT--PNPRT-GG---EHP----AIISRGPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEE--ECCCT-TC---CCC----SEEEECSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEECCCCcEEEEEec--CCcee-ee---eCC----ceEEecCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 66677889999998 57765544331 11111 11 111 16667777777777665432 23211111
Q ss_pred --ccccCCEEEecCC--CCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec
Q 003012 554 --LVTQGPSIGDVDG--DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF 629 (857)
Q Consensus 554 --~~~~~vavgDlDG--DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~ 629 (857)
.....+....+.. +|.. ++.++.+|.+.+|+..+++......... ...+....+.. || .-+++++.
T Consensus 121 ~~~~~~~v~~~~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~----~~~i~~~~~~p----dg-~~lasg~~ 190 (343)
T 3lrv_A 121 EVDSANEIIYMYGHNEVNTEY-FIWADNRGTIGFQSYEDDSQYIVHSAKS----DVEYSSGVLHK----DS-LLLALYSP 190 (343)
T ss_dssp ECCCSSCEEEEECCC---CCE-EEEEETTCCEEEEESSSSCEEEEECCCS----SCCCCEEEECT----TS-CEEEEECT
T ss_pred ecCCCCCEEEEEcCCCCCCCE-EEEEeCCCcEEEEECCCCcEEEEEecCC----CCceEEEEECC----CC-CEEEEEcC
Confidence 0112344455655 5532 5557789999999988777643221111 12233444542 22 34667789
Q ss_pred CCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 630 DGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 630 dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+|.+.+++-.++......+.......+....|..||.. |+.++ ++.|.+|+...
T Consensus 191 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~-l~s~~-~~~v~iwd~~~ 244 (343)
T 3lrv_A 191 DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYW-MVVEC-DQTVVCFDLRK 244 (343)
T ss_dssp TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSE-EEEEE-SSBEEEEETTS
T ss_pred CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCE-EEEEe-CCeEEEEEcCC
Confidence 99999998776654311121111223444557788753 44445 67999999754
No 146
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=93.86 E-value=2.8 Score=45.98 Aligned_cols=198 Identities=10% Similarity=-0.018 Sum_probs=111.5
Q ss_pred cCCCCCccEEEEeeCCeEEEEeCCC---------ceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCC
Q 003012 473 LDGDGNLDILVGTSFGLFYVLDHHG---------KIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEG 543 (857)
Q Consensus 473 lDGDG~~DIvVg~~~G~Lyv~~~dG---------~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G 543 (857)
+..++..-|++++.+|.|++|+-.. .......+. .....+....++.+|..-|+.++.+|.+.+|+...
T Consensus 136 ~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 213 (430)
T 2xyi_A 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR--GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINA 213 (430)
T ss_dssp EETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE--CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTS
T ss_pred ECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec--CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCC
Confidence 4444333455666788898888421 111111111 11223455667777766788888899999998643
Q ss_pred --CeeEEEc-cc--cccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC---eecccccccCCccccceEEEeccCC
Q 003012 544 --KGIWEQH-LK--SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS---KVRPYPYRTHGRVMNQVLLVDLTKR 615 (857)
Q Consensus 544 --~~~W~~~-~~--~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~---~~~~~~~~~~g~~~s~~~v~DlDgD 615 (857)
...+... .. ......+....+..++..-++.++.++.|.+|+..++. ....+ .. ....+....++.
T Consensus 214 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~~~v~~i~~~p- 287 (430)
T 2xyi_A 214 TPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV--DA---HTAEVNCLSFNP- 287 (430)
T ss_dssp CCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE--EC---CSSCEEEEEECS-
T ss_pred CCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe--ec---CCCCeEEEEeCC-
Confidence 1112111 00 01122334445555444445666778999999987653 22111 11 123455566663
Q ss_pred CCCCCCeEEEEEecCCeEEEEcCCCCc--eEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 616 GEKSKGLTIVTTSFDGYLYLIDGPTSC--ADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 616 g~gDG~~DLvv~s~dG~ly~~dg~~g~--~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
++..-+++++.+|.+.+++-.... ...+.... ..+....+..+|..=|+.++.+|.|.+|+..
T Consensus 288 ---~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 288 ---YSEFILATGSADKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp ---SCTTEEEEEETTSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGG
T ss_pred ---CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCC
Confidence 344567788899999999866522 22222111 1234445777876657778899999999874
No 147
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=93.81 E-value=12 Score=42.97 Aligned_cols=230 Identities=13% Similarity=0.110 Sum_probs=126.3
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC---CCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH---HGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~---dG~~~~~~~~~~g~ 509 (857)
+.|.+||..+++........ ..+....++.||+. +++++.++.|.+++- +++.....+. +.
T Consensus 159 ~~V~v~D~~t~~~~~~i~~g-------------~~~~~v~~spdg~~-l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~ 222 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDTG-------------YAVHISRMSASGRY-LLVIGRDARIDMIDLWAKEPTKVAEIKI--GI 222 (543)
T ss_dssp TEEEEEETTTCCEEEEEECS-------------TTEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCEEEEEEEC--CS
T ss_pred CeEEEEECCCceEEEEEecC-------------cccceEEECCCCCE-EEEECCCCeEEEEECcCCCCcEEEEEec--CC
Confidence 67899999999887654321 11456678888874 667777789999986 4544433332 22
Q ss_pred eeceeEEEeecC----CCCeEEEEEe-CCCcEEEEec-CCCeeEEEccccc-------c-ccCCEEEecCCCCcccEEEE
Q 003012 510 IQGAVVAADIND----DGKIELVTTD-THGNVAAWTA-EGKGIWEQHLKSL-------V-TQGPSIGDVDGDGHSDVVVP 575 (857)
Q Consensus 510 i~ss~~vaD~DG----DG~~DLvv~~-~~G~l~~~~~-~G~~~W~~~~~~~-------~-~~~vavgDlDGDG~~DLvv~ 575 (857)
.+...-|.- ||+. +++++ ..+.+.+|+. +++.+........ . ...+...-+..||..=++..
T Consensus 223 ---~p~~va~sp~~~~dg~~-l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 223 ---EARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp ---EEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred ---CcceEEeCCCcCCCCCE-EEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 234445676 8876 45555 4688889985 5665544332211 0 11222233444554323333
Q ss_pred ecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCccee
Q 003012 576 TLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGETSYS 654 (857)
Q Consensus 576 t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~~~s 654 (857)
..++.|+.++..+++.+...... .+..... +-++ .||+.-++....++.+.+++..++.... +..+..+..
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~---~~~s----pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIG-AAPFLHD---GGWD----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEE-CCSSCCC---EEEC----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred CCCCeEEEEEecCCCcceeEEec-cCcCccC---ceEC----CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 45678888887665433211111 1111111 1233 2455445555567889999988775443 444433221
Q ss_pred --eEEEEeecCCCCccEEEEe--cCCcEEEEeCCCCCCCcccc
Q 003012 655 --MVLADNVDGGDDLDLIVTT--MNGNVFCFSTPAPHHPLKAW 693 (857)
Q Consensus 655 --~~~a~DlDGDG~~DLvv~t--~~G~V~~~~~~~~~~pl~~W 693 (857)
...+ ++.|+.. ++++. .++.|.+|.....-|+..+|
T Consensus 371 g~g~~~--~~p~~g~-~~~s~~~~d~~V~v~d~~~~~~~~~~~ 410 (543)
T 1nir_A 371 GRGANF--VHPKYGP-VWSTSHLGDGSISLIGTDPKNHPQYAW 410 (543)
T ss_dssp TTCEEE--EETTTEE-EEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CCCccc--CCCCCcc-EEEeccCCCceEEEEEeCCCCCchhcC
Confidence 1222 3445333 55554 46899999987654554445
No 148
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.74 E-value=4.8 Score=43.53 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=86.5
Q ss_pred CCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccc
Q 003012 475 GDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLK 552 (857)
Q Consensus 475 GDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~ 552 (857)
.||. -++.++.++.|.+++ .+++....+... .....+....+..||. -|+.++.++.+.+|+. ++.........
T Consensus 180 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 255 (437)
T 3gre_A 180 EEKS-LLVALTNLSRVIIFDIRTLERLQIIENS--PRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFG 255 (437)
T ss_dssp SSCE-EEEEEETTSEEEEEETTTCCEEEEEECC--GGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCT
T ss_pred CCCC-EEEEEeCCCeEEEEeCCCCeeeEEEccC--CCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecC
Confidence 4443 466777789999999 466665544331 0123455566777764 4777888999999986 45444333221
Q ss_pred ccc-ccCCEEE-ecCCCCcccEEEEecCCcEEEEECCCCCeeccccccc----------CC-----------ccccceEE
Q 003012 553 SLV-TQGPSIG-DVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRT----------HG-----------RVMNQVLL 609 (857)
Q Consensus 553 ~~~-~~~vavg-DlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~----------~g-----------~~~s~~~v 609 (857)
... -..+.+. .+..||. -|+.++.+|.|.+|+..+|+....+.... .+ .....+..
T Consensus 256 ~~~~v~~~~~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSV-IVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp TCEEEEEEEECTTTCTTEE-EEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred CCCceEEEEeccccCCCcc-EEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 110 0011111 3444442 35566678889999988777543322110 00 01111222
Q ss_pred EeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc
Q 003012 610 VDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642 (857)
Q Consensus 610 ~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~ 642 (857)
..+. + ..-|+.++.+|.+++++-.++.
T Consensus 335 l~~~-----~-~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 335 ISVS-----N-DKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp EEEE-----T-TEEEEEEGGGTEEEEEETTCGG
T ss_pred EEEC-----C-ceEEEecCCCCeEEEEECCCcc
Confidence 2221 1 2567888889999988866553
No 149
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=93.53 E-value=8.1 Score=40.77 Aligned_cols=190 Identities=11% Similarity=0.029 Sum_probs=98.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee--CCeEEEEe-CCCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS--FGLFYVLD-HHGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~--~G~Lyv~~-~dG~~~~~~~~~~g~ 509 (857)
+.|.++|..++++.+...+..... .. ......++ + +| -++++.. ++.|++++ .+++..+..+.. .
T Consensus 105 ~~v~~iD~~t~~~~~~i~~g~~~~--~~--~~p~~i~~-~---~~--~lyv~~~~~~~~v~viD~~t~~~~~~i~~g--~ 172 (328)
T 3dsm_A 105 YRIFIINPKTYEITGYIECPDMDM--ES--GSTEQMVQ-Y---GK--YVYVNCWSYQNRILKIDTETDKVVDELTIG--I 172 (328)
T ss_dssp SEEEEEETTTTEEEEEEECTTCCT--TT--CBCCCEEE-E---TT--EEEEEECTTCCEEEEEETTTTEEEEEEECS--S
T ss_pred CeEEEEECCCCeEEEEEEcCCccc--cC--CCcceEEE-E---CC--EEEEEcCCCCCEEEEEECCCCeEEEEEEcC--C
Confidence 679999999999887765431000 00 01112333 2 22 4666663 56899999 467766554432 2
Q ss_pred eeceeEEEeecCCCCeEEEEEeCC-----------CcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEec
Q 003012 510 IQGAVVAADINDDGKIELVTTDTH-----------GNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL 577 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~-----------G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~ 577 (857)
....++ ++.||+ +++++.. +.+++++. +++......... ...+.-.-++.||.. +++++.
T Consensus 173 ~p~~i~---~~~dG~--l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~-lyv~~~ 244 (328)
T 3dsm_A 173 QPTSLV---MDKYNK--MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDT-LYWINN 244 (328)
T ss_dssp CBCCCE---ECTTSE--EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCE-EEEESS
T ss_pred CccceE---EcCCCC--EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCE-EEEEcc
Confidence 222233 356775 5665542 57888887 455443332211 123444556666643 566543
Q ss_pred CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe-----cCCeEEEEcCCCCceEEEEeCCcc
Q 003012 578 SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS-----FDGYLYLIDGPTSCADVVDIGETS 652 (857)
Q Consensus 578 ~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s-----~dG~ly~~dg~~g~~~~i~~g~~~ 652 (857)
.++.++..+++.... ++...+ ...+.-.-++. + .-.|++++ .++.+++++..+.....+..|..+
T Consensus 245 --~v~~~d~~t~~~~~~-~~~~~~--~~~p~gi~vdp----~-~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P 314 (328)
T 3dsm_A 245 --DIWRMPVEADRVPVR-PFLEFR--DTKYYGLTVNP----N-NGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIP 314 (328)
T ss_dssp --SEEEEETTCSSCCSS-CSBCCC--SSCEEEEEECT----T-TCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESE
T ss_pred --EEEEEECCCCceeee-eeecCC--CCceEEEEEcC----C-CCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCc
Confidence 899999887775321 111111 11122122221 1 12466665 356788888774444445544433
No 150
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.42 E-value=8.1 Score=39.81 Aligned_cols=196 Identities=10% Similarity=0.070 Sum_probs=110.7
Q ss_pred ccEEEecCCCC--CccEEEEeeCCeEEEEeCC--Ccee-eeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec
Q 003012 467 SPTVVDLDGDG--NLDILVGTSFGLFYVLDHH--GKIR-EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA 541 (857)
Q Consensus 467 spavaDlDGDG--~~DIvVg~~~G~Lyv~~~d--G~~~-~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~ 541 (857)
.+....+..|+ ..-|+.++.+|.|.+++.. +... ..+.. ....+....+..||. -|+.++.++.+.+|+.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~-~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM----HTGPVLDVCWSDDGS-KVFTASCDKTAKMWDL 115 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE----CSSCEEEEEECTTSS-EEEEEETTSEEEEEET
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc----ccCCEEEEEECcCCC-EEEEEcCCCcEEEEEc
Confidence 35566777774 3457777888999888843 4433 12211 123455566777775 3667788899999987
Q ss_pred C-CCeeEEEccccccccCCEEEec--CCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 542 E-GKGIWEQHLKSLVTQGPSIGDV--DGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 542 ~-G~~~W~~~~~~~~~~~vavgDl--DGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
. +....... ....+....+ ..+|. -++.++.+|.+.+|+..+++.+..+... ......+...
T Consensus 116 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~~~~~~~---- 180 (368)
T 3mmy_A 116 SSNQAIQIAQ----HDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLP------ERCYCADVIY---- 180 (368)
T ss_dssp TTTEEEEEEE----CSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECS------SCEEEEEEET----
T ss_pred CCCCceeecc----ccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecC------CCceEEEecC----
Confidence 4 33332211 1222333444 45553 2666777899999998777765443321 1233334432
Q ss_pred CCCeEEEEEecCCeEEEEcCCCCceEEEEeCCc--ceeeEEEEeecCCCCcc-EEEEecCCcEEEEeCCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTSCADVVDIGET--SYSMVLADNVDGGDDLD-LIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~--~~s~~~a~DlDGDG~~D-Lvv~t~~G~V~~~~~~~ 685 (857)
..++++..++.+.+++-............. ........-.+.....+ +++++.+|.+.+|+...
T Consensus 181 ---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~ 247 (368)
T 3mmy_A 181 ---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINP 247 (368)
T ss_dssp ---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSC
T ss_pred ---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCC
Confidence 246677777877777766544333222211 11112222233333333 77788999999999754
No 151
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=93.39 E-value=7 Score=42.21 Aligned_cols=203 Identities=15% Similarity=0.099 Sum_probs=111.0
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC----CCceeeeeeeec------cc--eeceeEEEe--ecCCCCeEEEEEeCC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH----HGKIREKFPLEM------AE--IQGAVVAAD--INDDGKIELVTTDTH 533 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~----dG~~~~~~~~~~------g~--i~ss~~vaD--~DGDG~~DLvv~~~~ 533 (857)
+....+..||. -|+.++.+|.|.+++- .|+......... .. ....+.... +..|| .-|+++..+
T Consensus 114 v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d 191 (437)
T 3gre_A 114 VTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNL 191 (437)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETT
T ss_pred EEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCC
Confidence 44555666664 4667777888888763 454332111110 00 001111111 23444 357777788
Q ss_pred CcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEE--
Q 003012 534 GNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLV-- 610 (857)
Q Consensus 534 G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~-- 610 (857)
+.+.+|+. +++..+...... ....+....++.||. -|+.++.+|.|.+|+..+++.+..+..... .++...
T Consensus 192 ~~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~ 265 (437)
T 3gre_A 192 SRVIIFDIRTLERLQIIENSP-RHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDH----APITHVEV 265 (437)
T ss_dssp SEEEEEETTTCCEEEEEECCG-GGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTC----EEEEEEEE
T ss_pred CeEEEEeCCCCeeeEEEccCC-CCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCC----CceEEEEe
Confidence 99999986 666665543210 122444555666654 367778899999999887776554332211 122222
Q ss_pred --eccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCc------------------------ceeeEEEEeecCC
Q 003012 611 --DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGET------------------------SYSMVLADNVDGG 664 (857)
Q Consensus 611 --DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~------------------------~~s~~~a~DlDGD 664 (857)
.+.. ...-|++++.+|.+.+++-.++.....-.+.. ....+....+. +
T Consensus 266 ~~~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 266 CQFYGK-----NSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp CTTTCT-----TEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-T
T ss_pred ccccCC-----CccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-C
Confidence 3321 23467788889999999877654332111110 00012222344 4
Q ss_pred CCccEEEEecCCcEEEEeCCC
Q 003012 665 DDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 665 G~~DLvv~t~~G~V~~~~~~~ 685 (857)
| .-|+.++.+|.|++|+...
T Consensus 340 ~-~~l~s~~~d~~i~~wd~~~ 359 (437)
T 3gre_A 340 D-KILLTDEATSSIVMFSLNE 359 (437)
T ss_dssp T-EEEEEEGGGTEEEEEETTC
T ss_pred c-eEEEecCCCCeEEEEECCC
Confidence 4 3366677899999999754
No 152
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=93.24 E-value=8.3 Score=39.41 Aligned_cols=215 Identities=12% Similarity=0.018 Sum_probs=106.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeC-CCceeeeeeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDH-HGKIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~-dG~~~~~~~~~~g~i 510 (857)
+.|+.|+.+++...|.. . ...+...-++.||. ++++.. .+.|+.++. +|+.........+..
T Consensus 50 ~~i~~~~~~~~~~~~~~----~----------~~~~~~l~~~~dg~--l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 113 (296)
T 3e5z_A 50 NRTWAWSDDGQLSPEMH----P----------SHHQNGHCLNKQGH--LIACSHGLRRLERQREPGGEWESIADSFEGKK 113 (296)
T ss_dssp TEEEEEETTSCEEEEES----S----------CSSEEEEEECTTCC--EEEEETTTTEEEEECSTTCCEEEEECEETTEE
T ss_pred CEEEEEECCCCeEEEEC----C----------CCCcceeeECCCCc--EEEEecCCCeEEEEcCCCCcEEEEeeccCCCC
Confidence 66889999877212211 0 01244445677876 566664 468999996 787543221111111
Q ss_pred eceeEEEeecCCCCeEEEEEeC------------------CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccE
Q 003012 511 QGAVVAADINDDGKIELVTTDT------------------HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDV 572 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~------------------~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DL 572 (857)
...+.-.-++.||. +++++. .+.++.++..|...-... . ...+.-.-++.||.. +
T Consensus 114 ~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~--~--~~~~~gi~~s~dg~~-l 186 (296)
T 3e5z_A 114 LNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIR--D--RVKPNGLAFLPSGNL-L 186 (296)
T ss_dssp CCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEEC--C--CSSEEEEEECTTSCE-E
T ss_pred CCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCCCCEEEeec--C--CCCCccEEECCCCCE-E
Confidence 11222233466775 566421 346777766654321111 1 111122335666654 3
Q ss_pred EEEecCCcEEEEECC-CCCe-ecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCC
Q 003012 573 VVPTLSGNIYVLSGK-DGSK-VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE 650 (857)
Q Consensus 573 vv~t~~G~I~~l~~~-~G~~-~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~ 650 (857)
+..+..+.|+.|+.. +|+. .....+......... +..|- +| .|++++ ++.+++++..+.....+....
T Consensus 187 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~-i~~d~------~G--~l~v~~-~~~v~~~~~~g~~~~~~~~~~ 256 (296)
T 3e5z_A 187 VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDG-LRVDA------GG--LIWASA-GDGVHVLTPDGDELGRVLTPQ 256 (296)
T ss_dssp EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCS-EEEBT------TS--CEEEEE-TTEEEEECTTSCEEEEEECSS
T ss_pred EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCe-EEECC------CC--CEEEEc-CCeEEEECCCCCEEEEEECCC
Confidence 444456788888764 5654 111111111111112 22232 33 367777 778888987755555555444
Q ss_pred cceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 651 TSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 651 ~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
. ...+. +.++....|++++. +.++.++..+
T Consensus 257 ~-~~~~~---f~~~d~~~L~v~t~-~~l~~~~~~~ 286 (296)
T 3e5z_A 257 T-TSNLC---FGGPEGRTLYMTVS-TEFWSIETNV 286 (296)
T ss_dssp C-CCEEE---EESTTSCEEEEEET-TEEEEEECSC
T ss_pred C-ceeEE---EECCCCCEEEEEcC-CeEEEEEccc
Confidence 4 22233 32332234777765 5788888744
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=93.07 E-value=9.6 Score=39.70 Aligned_cols=229 Identities=15% Similarity=0.152 Sum_probs=107.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEe-eCCeEEEEe--CCCceeeeeeeec-c
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGT-SFGLFYVLD--HHGKIREKFPLEM-A 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~-~~G~Lyv~~--~dG~~~~~~~~~~-g 508 (857)
+.|++|+.++|+......+. .....|...-++.||.. |++++ .++.+.+++ .+|+......... +
T Consensus 63 ~~v~~~~~~~g~~~~~~~~~----------~~~~~p~~~a~spdg~~-l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~ 131 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTVV----------APGTPPAYVAVDEARQL-VYSANYHKGTAEVMKIAADGALTLTDTVQHSG 131 (347)
T ss_dssp EEEEEEEEETTEEEEEEEEE----------EESCCCSEEEEETTTTE-EEEEETTTTEEEEEEECTTSCEEEEEEEECCC
T ss_pred ceEEEEEecCCcEEEeeeee----------cCCCCCEEEEECCCCCE-EEEEeCCCCEEEEEEeCCCCCeeecceeecCC
Confidence 56888888777643322211 01123444557778864 45554 456777776 4555432222211 1
Q ss_pred c------eeceeEEEeecCCCCeEEEEEeC-CCcEEEEecC--CCeeEEEccccccccCCEEEecCCCCcccEEEEe-cC
Q 003012 509 E------IQGAVVAADINDDGKIELVTTDT-HGNVAAWTAE--GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LS 578 (857)
Q Consensus 509 ~------i~ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~--G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~ 578 (857)
. ....+...-++.||+ +++++. .+.+.+|+.. |...............+.-.-++.||.. ++++. .+
T Consensus 132 ~~p~~~~~~~~~~~~~~spdg~--l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~-l~v~~~~~ 208 (347)
T 3hfq_A 132 HGPRPEQDGSHIHYTDLTPDNR--LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY-AFLAGELS 208 (347)
T ss_dssp CCSSTTCSSCCEEEEEECTTSC--EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTT
T ss_pred CCCCccccCCCceEEEECCCCc--EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE-EEEEeCCC
Confidence 1 111245566788998 666654 5678888754 4433222111112223344557778864 45543 45
Q ss_pred CcEEEEECC--CCCeecccccccC-Ccc--ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCC-CCceEE---EEeC
Q 003012 579 GNIYVLSGK--DGSKVRPYPYRTH-GRV--MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGP-TSCADV---VDIG 649 (857)
Q Consensus 579 G~I~~l~~~--~G~~~~~~~~~~~-g~~--~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~-~g~~~~---i~~g 649 (857)
+.+.+|+-. +|+.......... ... ...+.-.-+.. ||..-++....++.+.+++-. .+.... +...
T Consensus 209 ~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp----dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~ 284 (347)
T 3hfq_A 209 SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH----DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE 284 (347)
T ss_dssp TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT----TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS
T ss_pred CEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC----CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC
Confidence 666666533 4543211111110 000 01122233432 344323333446666666532 222222 2221
Q ss_pred CcceeeEEEEeecCCCCccEEEEec-CCcEEEEeC
Q 003012 650 ETSYSMVLADNVDGGDDLDLIVTTM-NGNVFCFST 683 (857)
Q Consensus 650 ~~~~s~~~a~DlDGDG~~DLvv~t~-~G~V~~~~~ 683 (857)
.. .+....|+.||+. |++++. ++.+.+|..
T Consensus 285 ~~---~~~~~~~spdg~~-l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 285 GD---FPRDFDLDPTEAF-VVVVNQNTDNATLYAR 315 (347)
T ss_dssp SS---CCCEEEECTTSSE-EEEEETTTTEEEEEEE
T ss_pred CC---CcCeEEECCCCCE-EEEEEcCCCcEEEEEE
Confidence 11 1222237788863 566654 477777754
No 154
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.97 E-value=1.8 Score=45.83 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=102.9
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCc-eeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGK-IREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~-~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~ 545 (857)
+....+..||. -|+.++.++.|.+++- ++. ......+. .....+....+..||. -|++++.++.+.+|+.....
T Consensus 58 v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 58 VTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDGTWKQTLVLL--RLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp EEEEEECTTTC-CEEEEETTSSEEEC------CCCCEEECC--CCSSCEEEEECCTTSS-CCEEEESSSCEEECCC----
T ss_pred EEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCCceeeeeEec--ccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcc
Confidence 45567777874 4667777888998884 443 11111111 1223456666777775 46677788999999864433
Q ss_pred eEE--EccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecc-----c--------ccccCCccccceEEE
Q 003012 546 IWE--QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRP-----Y--------PYRTHGRVMNQVLLV 610 (857)
Q Consensus 546 ~W~--~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~-----~--------~~~~~g~~~s~~~v~ 610 (857)
.|. ..........+....+..||. -|+.++.++.+.+|+...+..... + ..... .....+...
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~ 211 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV 211 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE
Confidence 221 111111233445566777764 366677789999988643221100 0 00000 112234444
Q ss_pred eccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE-----EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 611 DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-----VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 611 DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~-----~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
.+.. +| .-|++++.+|.+++++-.++... .+.... ..+....+..||. ++++..++.+.+|...
T Consensus 212 ~~sp----~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~--~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 212 GFSP----SG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESA--IVAAGYNYSPILLQGN 280 (377)
T ss_dssp EECT----TS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTE--EEEEESSSSEEEECCC
T ss_pred EECC----CC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCC--EEEEEcCCcEEEEEeC
Confidence 5543 22 35778888998888776554331 111111 1233334666764 6666666777777764
No 155
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=92.93 E-value=12 Score=40.46 Aligned_cols=224 Identities=13% Similarity=0.031 Sum_probs=120.7
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i 510 (857)
++.|++||..+|+......+... ...+..+.+..||. -|++++.+|.|.+++ .+|+.+..+....
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~----------~~~V~sv~fspdg~-~lasgs~Dg~v~iWd~~~~~~~~~~~~h~--- 189 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQP----------GEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHS--- 189 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCST----------TCCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCS---
T ss_pred CCEEEEEECCCCCEEEEEEecCC----------CCcEEEEEECCCCC-EEEEEECCCeEEEEEcCCCcEEEEEeCCC---
Confidence 47799999999987655443211 12245667788886 477788899999998 5676554433221
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
..+.....|+ . -++.++.++.+.+|+............ .....+....+..+|. -++.+..++.+.++...++.
T Consensus 190 -~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 190 -ARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp -SCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCS
T ss_pred -CceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCCCC-eeeeeeccccceEEeecccc
Confidence 1223333443 2 466777788888887643222211111 1122333444555554 35666678889998877665
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEE--EecCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCc
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT--TSFDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDL 667 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv--~s~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~ 667 (857)
........ .......+....+.. ++..-+++ ++.++.+.+++..++.... +...... ...-+..++.
T Consensus 264 ~~~~~~~~-~~~~~~~V~~~~~~p----~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v----~~~~~~~~~~- 333 (420)
T 4gga_A 264 GGWVPLQT-FTQHQGAVKAVAWCP----WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQV----CSILWSPHYK- 333 (420)
T ss_dssp SCSCCSEE-ECCCSSCEEEEEECT----TCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCE----EEEEEETTTT-
T ss_pred ccceeeee-ecccCCceeeeeeCC----CcccEEEEEeecCCCEEEEEeCCccccceeeccccce----eeeeecCCCC-
Confidence 43211111 111122333333331 11222232 3468889888877765443 2222222 2222445554
Q ss_pred cEEEEe--cCCcEEEEeCCC
Q 003012 668 DLIVTT--MNGNVFCFSTPA 685 (857)
Q Consensus 668 DLvv~t--~~G~V~~~~~~~ 685 (857)
.+++++ .+|.|++|+..+
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp EEEEEECTTTCCEEEEETTT
T ss_pred eEEEEEecCCCEEEEEECCC
Confidence 355554 689999999743
No 156
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.61 E-value=7.1 Score=40.29 Aligned_cols=162 Identities=9% Similarity=-0.021 Sum_probs=93.9
Q ss_pred EEEecCC---CCCccEEEEeeCCeEEEEeC-CCceeeeeeeecc-ceeceeEEEeecCCCC---eEEEEEeCCCcEEEEe
Q 003012 469 TVVDLDG---DGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMA-EIQGAVVAADINDDGK---IELVTTDTHGNVAAWT 540 (857)
Q Consensus 469 avaDlDG---DG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g-~i~ss~~vaD~DGDG~---~DLvv~~~~G~l~~~~ 540 (857)
....+.. ||..-++++..++.|.+++. +++....+..... .....+....+..++. .-|+++..++.+.+|+
T Consensus 22 ~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d 101 (366)
T 3k26_A 22 FGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIIN 101 (366)
T ss_dssp EEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEEC
T ss_pred EEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEE
Confidence 3445553 46666888888888888884 4554433322111 1112244444444432 3577778889999998
Q ss_pred c-CCCeeEEEccccccccCCEEEecCC-CCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 541 A-EGKGIWEQHLKSLVTQGPSIGDVDG-DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 541 ~-~G~~~W~~~~~~~~~~~vavgDlDG-DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
. +++....... ....+....+.. ++. -|+.++.+|.|.+|+..+++....+... ......+....++.
T Consensus 102 ~~~~~~~~~~~~---~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~---- 171 (366)
T 3k26_A 102 PITMQCIKHYVG---HGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDTLVAIFGGV--EGHRDEVLSADYDL---- 171 (366)
T ss_dssp TTTCCEEEEEES---CCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTEEEEEECST--TSCSSCEEEEEECT----
T ss_pred chhceEeeeecC---CCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCeEEEEeccc--ccccCceeEEEECC----
Confidence 6 5665544321 122344455665 443 4677778999999998877765433110 11223444555543
Q ss_pred CCCeEEEEEecCCeEEEEcCCCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTS 641 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g 641 (857)
++ .-+++++.+|.+++++-.++
T Consensus 172 ~~-~~l~~~~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 172 LG-EKIMSCGMDHSLKLWRINSK 193 (366)
T ss_dssp TS-SEEEEEETTSCEEEEESCSH
T ss_pred CC-CEEEEecCCCCEEEEECCCC
Confidence 22 35778888999988886653
No 157
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.41 E-value=12 Score=39.14 Aligned_cols=204 Identities=10% Similarity=0.060 Sum_probs=104.1
Q ss_pred EEecCCCCCccEEEEeeCCeEEEEeCC-CceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe---
Q 003012 470 VVDLDGDGNLDILVGTSFGLFYVLDHH-GKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG--- 545 (857)
Q Consensus 470 vaDlDGDG~~DIvVg~~~G~Lyv~~~d-G~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~--- 545 (857)
..+++++ -|+.++.++.|.+++.. +.......+..+.-...+....+..||. -|+.++.++.+.+|+.....
T Consensus 19 ~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~ 94 (330)
T 2hes_X 19 SFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRT 94 (330)
T ss_dssp EEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------
T ss_pred eeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCcc
Confidence 3445544 35556678888888843 3221111121111223466677788875 46777888999999763211
Q ss_pred -eEEE-ccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeE
Q 003012 546 -IWEQ-HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLT 623 (857)
Q Consensus 546 -~W~~-~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~D 623 (857)
.+.. .........+....+..||. -|+.++.++.+.+|+...+...... ......-...+....++. ++ .-
T Consensus 95 ~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~-~~~~~~h~~~v~~v~~~p----~~-~~ 167 (330)
T 2hes_X 95 FEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYEC-ISVLQEHSQDVKHVIWHP----SE-AL 167 (330)
T ss_dssp CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEE-EEEECCCSSCEEEEEECS----SS-SE
T ss_pred ccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEE-EEEeccCCCceEEEEECC----CC-CE
Confidence 1110 00011223344556777775 3666777899999986322111000 000001122344445543 22 35
Q ss_pred EEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCc-cEEEEecCCcEEEEeCC
Q 003012 624 IVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDL-DLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 624 Lvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~-DLvv~t~~G~V~~~~~~ 684 (857)
|+.++.++.+.+++...+....+..-......+...+++.++.. -|+.++.++.|.+|+..
T Consensus 168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence 77888899887776443321211111111123444567776433 36667889999999863
No 158
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.38 E-value=10 Score=38.30 Aligned_cols=190 Identities=18% Similarity=0.169 Sum_probs=95.5
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCC--CCCccEEEEeeCCeEEEEeC-CCcee-----eeee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDG--DGNLDILVGTSFGLFYVLDH-HGKIR-----EKFP 504 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDG--DG~~DIvVg~~~G~Lyv~~~-dG~~~-----~~~~ 504 (857)
|.|..|+..++...+.....+. . ....+....+.. ||. -|+.++.+|.|.+++- .+... +...
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~~-------~-~~~~v~~~~~~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 33 QHIKVFKLDKDTSNWELSDSWR-------A-HDSSIVAIDWASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp SEEEEEEECSSSCCEEEEEEEE-------C-CSSCEEEEEECCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred CeEEEEECCCCCCcceecceec-------c-CCCcEEEEEEcCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 6688888876654333221110 0 012244455555 343 4666777888888883 44211 0000
Q ss_pred eeccceeceeEEEeecCC--CCeEEEEEeCCCcEEEEec-CCCee--EEEc--cc------cccccCCEEEecCCC--Cc
Q 003012 505 LEMAEIQGAVVAADINDD--GKIELVTTDTHGNVAAWTA-EGKGI--WEQH--LK------SLVTQGPSIGDVDGD--GH 569 (857)
Q Consensus 505 ~~~g~i~ss~~vaD~DGD--G~~DLvv~~~~G~l~~~~~-~G~~~--W~~~--~~------~~~~~~vavgDlDGD--G~ 569 (857)
.........+....+..+ |. -|+++..++.+.+|+. ++... |... .. ......+....+..+ ..
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 104 CTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp EEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred eeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 010112233555566666 43 4777788899999985 44432 3211 00 011223344445444 12
Q ss_pred ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC---eEEEEEecCCeEEEEcCC
Q 003012 570 SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG---LTIVTTSFDGYLYLIDGP 639 (857)
Q Consensus 570 ~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~---~DLvv~s~dG~ly~~dg~ 639 (857)
.-+++++.++.+.++....+.......... -..++....+.. ++. .-|++++.+|.+.+++-.
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~i~~~~~~p----~~~~~~~~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 183 EKLAVSALEQAIIYQRGKDGKLHVAAKLPG---HKSLIRSISWAP----SIGRWYQLIATGCKDGRIRIFKIT 248 (351)
T ss_dssp CEEEEEETTEEEEEEECTTSCEEEEEECCC---CCSCEEEEEECC----CSSCSSEEEEEEETTSCEEEEEEE
T ss_pred cEEEEecCCCcEEEEccCCCceeeeeecCC---CCcceeEEEECC----CCCCcceEEEEEcCCCeEEEEeCC
Confidence 246666677777777766665422111111 123444455553 232 567888888977776643
No 159
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.31 E-value=11 Score=38.61 Aligned_cols=195 Identities=9% Similarity=0.009 Sum_probs=99.0
Q ss_pred EEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCC--CCeEEEEEeCCCcEEEEecCCCeeEEEcccccccc
Q 003012 481 ILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDD--GKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQ 557 (857)
Q Consensus 481 IvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGD--G~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~ 557 (857)
|+.++.++.|.+++. +|+........ .-...+....+..+ |. -|+.++.++.+.+|+......+..........
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~ 146 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQIAVHA--VHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAHAI 146 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCCEEEC--CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECCSS
T ss_pred EEEEcCCCEEEEEEcCCCceEEEEEee--cCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecccC
Confidence 556677889998884 44321111111 11123444555544 43 47778888999999763221111000000111
Q ss_pred CCEEEecCCCC------------cccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCC--CeE
Q 003012 558 GPSIGDVDGDG------------HSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSK--GLT 623 (857)
Q Consensus 558 ~vavgDlDGDG------------~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG--~~D 623 (857)
.+....+..++ ..-|+.++.++.|.+|+..++...+....... .-...+.-..++. ++ ..-
T Consensus 147 ~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp----~~~~~~~ 221 (297)
T 2pm7_B 147 GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSP----TVLLRSY 221 (297)
T ss_dssp CEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECC----CCSSSEE
T ss_pred ccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECC----CCCCceE
Confidence 12222233221 12366677789999888655542111100111 1123344555553 22 355
Q ss_pred EEEEecCCeEEEEcCCCCc--eEEEEeC-CcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 624 IVTTSFDGYLYLIDGPTSC--ADVVDIG-ETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 624 Lvv~s~dG~ly~~dg~~g~--~~~i~~g-~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
|+.++.++.+.+++...+. .....+. ......+....+..||.. |+.++.+|.|.+|+..
T Consensus 222 las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 222 MASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNV-LALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCC-EEEEETTSCEEEEEEC
T ss_pred EEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCE-EEEEcCCCcEEEEEEC
Confidence 7888889988777644322 1111111 111123445568888864 7778899999999864
No 160
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=92.30 E-value=11 Score=38.50 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=108.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeec-cceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEM-AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~-g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~ 545 (857)
+....+..|+..=|+.++.++.|.+++ ..++.....+... ..-...+....+..||.. |+.+..++.+.+|+.....
T Consensus 41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~-l~s~~~d~~i~~~~~~~~~ 119 (340)
T 4aow_A 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF-ALSGSWDGTLRLWDLTTGT 119 (340)
T ss_dssp EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTE
T ss_pred EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCE-EEEEcccccceEEeecccc
Confidence 445566666433344566788888887 3333222222211 111234666777888864 6677788889888775443
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIV 625 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLv 625 (857)
........ ........+..++. -|+.++.++.+.+|+........ .... .-...+....+..+ ....-++
T Consensus 120 ~~~~~~~~--~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~-~~~~---~~~~~v~~~~~~~~---~~~~~~~ 189 (340)
T 4aow_A 120 TTRRFVGH--TKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYT-VQDE---SHSEWVSCVRFSPN---SSNPIIV 189 (340)
T ss_dssp EEEEEECC--SSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEE-ECSS---SCSSCEEEEEECSC---SSSCEEE
T ss_pred eeeeecCC--CCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEE-EEec---cccCcccceEEccC---CCCcEEE
Confidence 32221111 11122233333433 36667778888888754332211 1111 11122333333211 1223456
Q ss_pred EEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 626 TTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 626 v~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.++.++.+.+++...+.....-.+.. ..+....+..||.. |+.++.+|.+.+|+...
T Consensus 190 s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~-l~s~s~Dg~i~iwd~~~ 246 (340)
T 4aow_A 190 SCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSL-CASGGKDGQAMLWDLNE 246 (340)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSE-EEEEETTCEEEEEETTT
T ss_pred EEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCE-EEEEeCCCeEEEEEecc
Confidence 67788888888877664433222211 12334457788764 67778999999999754
No 161
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=92.22 E-value=3.4 Score=43.59 Aligned_cols=201 Identities=13% Similarity=0.123 Sum_probs=103.3
Q ss_pred EecCCCCCccEEEEeeCCeEEEEeC-CC--ceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeE
Q 003012 471 VDLDGDGNLDILVGTSFGLFYVLDH-HG--KIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIW 547 (857)
Q Consensus 471 aDlDGDG~~DIvVg~~~G~Lyv~~~-dG--~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W 547 (857)
..+..||. -|++++.++.|.+++. ++ +....+. .....+....+..||. -|+.++.++.+.+|+......|
T Consensus 17 ~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~-~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 17 HAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFS----DHDKIVTCVDWAPKSN-RIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBC----CCSSCEEEEEECTTTC-CEEEEETTSSEEEC------CC
T ss_pred EEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEe----cCCceEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCCce
Confidence 34555664 3444556777888774 34 2221221 1123456667777774 4677778899999986433212
Q ss_pred EEc-cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEE
Q 003012 548 EQH-LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT 626 (857)
Q Consensus 548 ~~~-~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv 626 (857)
... ........+....+..||. -|+.++.++.+.+|+..+++..+... ...+.....+....+.. ++ .-|++
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~h~~~v~~~~~~~----~~-~~l~~ 163 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSK-HLKRPLRSTILSLDWHP----NN-VLLAA 163 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCE-EECSSCCSCEEEEEECT----TS-SEEEE
T ss_pred eeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeee-EeecccCCCeEEEEEcC----CC-CEEEE
Confidence 111 1111223445566766665 36777788999998876665211100 11111223444555543 22 35778
Q ss_pred EecCCeEEEEcCCCCc----------------eEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 627 TSFDGYLYLIDGPTSC----------------ADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 627 ~s~dG~ly~~dg~~g~----------------~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
++.+|.+++++..... ...+..- .....+....+..||. -|+.++.+|.|.+|+....
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~-~l~~~~~d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGN-ALAYAGHDSSVTIAYPSAP 237 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSS-CEEEEETTTEEC-CEECST
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence 8888988877743211 1111111 1112244455778876 4777889999999987553
No 162
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=91.92 E-value=14 Score=38.70 Aligned_cols=232 Identities=10% Similarity=-0.002 Sum_probs=115.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCce----eeeeeeecc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKI----REKFPLEMA 508 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~----~~~~~~~~g 508 (857)
+.+..|+..+++......+.. ......+....+..||. -|+.++.++.|.+++..... .........
T Consensus 34 ~~i~lw~~~~~~~~~~~~~~~--------~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 104 (330)
T 2hes_X 34 RKIKLVSVKYDDFTLIDVLDE--------TAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE 104 (330)
T ss_dssp SCEEEEECSSSCCEEEEEECT--------TCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC
T ss_pred CEEEEEEecCCCeEEEEEEec--------CCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEc
Confidence 567778877654322222210 00112344566777875 36667778888888743211 111000001
Q ss_pred ceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEE-ccccccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 509 EIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQ-HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 509 ~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~-~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
.-...+....+..||. -|+.++.++.+.+|+. .+...+.. .........+....+..||. -|+.++.++.|.+|+.
T Consensus 105 ~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~ 182 (330)
T 2hes_X 105 GHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKD 182 (330)
T ss_dssp ----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEE
T ss_pred CCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEEC
Confidence 1223456677778875 4777788999999986 33222221 11111222344455666664 2666777899988875
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCC----ceEE--E-EeCCcceeeEEEE
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS----CADV--V-DIGETSYSMVLAD 659 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g----~~~~--i-~~g~~~~s~~~a~ 659 (857)
.++.......... -...+....++.+ .+..-|+.++.++.+.+++-.++ ...+ . .+.......+...
T Consensus 183 ~~~~~~~~~~~~~---h~~~v~~~~~~~~---~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 183 YDDDWECVAVLNG---HEGTVWSSDFDKT---EGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNV 256 (330)
T ss_dssp ETTEEEEEEEECC---CSSCEEEEEECCS---SSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEE
T ss_pred CCCCeeEEEEccC---CCCcEEEEEecCC---CCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEE
Confidence 4442111001111 1223444556532 12345788888997766653221 1111 1 1111011123333
Q ss_pred eecCCCCccEEEEecCCcEEEEeC
Q 003012 660 NVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 660 DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
.+..++ -|+.++.+|.|.+|+.
T Consensus 257 ~~s~~~--~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 257 AWGFNG--LIASVGADGVLAVYEE 278 (330)
T ss_dssp EECTTS--CEEEEETTSCEEEEEE
T ss_pred EEcCCC--EEEEEeCCCEEEEEEc
Confidence 355444 4777889999999985
No 163
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=91.76 E-value=12 Score=37.61 Aligned_cols=212 Identities=13% Similarity=0.039 Sum_probs=109.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeCCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
+.|+.++.+ |+... ..+ .. ....|.-.-++.+|. ++++.. .+.|+.++.+|+.. .+.... ..
T Consensus 83 ~~v~~~d~~-g~~~~-~~~--~~--------~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~-~~~~~~--~~ 145 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTE-YPL--PQ--------PDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIY-EYDLPN--KG 145 (300)
T ss_dssp TEEEEECTT-SCEEE-EEC--SS--------TTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEE-EEECSS--TT
T ss_pred CeEEEECCC-CCeEE-ecC--CC--------CCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEE-EccCCC--CC
Confidence 558888877 55431 111 10 012243444556664 677665 56899998777654 222221 11
Q ss_pred ceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCC
Q 003012 512 GAVVAADINDDGKIELVTTDT-HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDG 589 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G 589 (857)
..+...-++.+|. |+++.. .+.++.++.+|+..- ...... ...+.-.-++.+| .|++++. .+.++.++. +|
T Consensus 146 ~~~~~i~~d~~g~--l~v~~~~~~~i~~~~~~g~~~~-~~~~~~-~~~~~~i~~d~~g--~l~v~~~~~~~i~~~~~-~g 218 (300)
T 2qc5_A 146 SYPAFITLGSDNA--LWFTENQNNSIGRITNTGKLEE-YPLPTN-AAAPVGITSGNDG--ALWFVEIMGNKIGRITT-TG 218 (300)
T ss_dssp CCEEEEEECTTSS--EEEEETTTTEEEEECTTCCEEE-EECSST-TCCEEEEEECTTS--SEEEEETTTTEEEEECT-TC
T ss_pred CCceeEEECCCCC--EEEEecCCCeEEEECCCCcEEE-eeCCCC-CCCcceEEECCCC--CEEEEccCCCEEEEEcC-CC
Confidence 2344444677786 777765 567888887665432 111111 1223333456666 4777765 457888886 56
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
.... +... ..... +.-.-++ .+|. |++++. ++.++.++.. +....+........ +...-++.||.
T Consensus 219 ~~~~-~~~~--~~~~~-~~~i~~d----~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~-~~~i~~~~~g~-- 284 (300)
T 2qc5_A 219 EISE-YDIP--TPNAR-PHAITAG----KNSE--IWFTEWGANQIGRITND-NTIQEYQLQTENAE-PHGITFGKDGS-- 284 (300)
T ss_dssp CEEE-EECS--STTCC-EEEEEEC----STTC--EEEEETTTTEEEEECTT-SCEEEEECCSTTCC-CCCEEECTTSC--
T ss_pred cEEE-EECC--CCCCC-ceEEEEC----CCCC--EEEeccCCCeEEEECCC-CcEEEEECCccCCc-cceeEeCCCCC--
Confidence 6432 1111 11112 2222233 2333 777765 4788888874 43333333211111 11112566665
Q ss_pred EEEEecCCcEEEEeC
Q 003012 669 LIVTTMNGNVFCFST 683 (857)
Q Consensus 669 Lvv~t~~G~V~~~~~ 683 (857)
|++++.+ .++.|++
T Consensus 285 l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 285 VWFALKC-KIGKLNL 298 (300)
T ss_dssp EEEECSS-EEEEEEE
T ss_pred EEEEccC-ceEEeCC
Confidence 7888764 7777764
No 164
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.46 E-value=15 Score=38.17 Aligned_cols=229 Identities=13% Similarity=0.075 Sum_probs=113.2
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCC--CCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDG--DGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDG--DG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~ 509 (857)
+.+.+||..+++......+. ++. ..+..+.+.. +|. -|+.++.++.|.+++. +|+......+. .
T Consensus 35 ~~v~lwd~~~~~~~~~~~l~---------gH~-~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~~~~~~--~ 101 (316)
T 3bg1_A 35 RSVKIFDVRNGGQILIADLR---------GHE-GPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENGTWEKSHEHA--G 101 (316)
T ss_dssp TEEEEEEEETTEEEEEEEEE---------CCS-SCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSSCCCEEEEEC--C
T ss_pred CeEEEEEecCCCcEEEEEEc---------CCC-ccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCCcceEEEEcc--C
Confidence 56788887766532222221 110 1223334433 232 4666777889999884 44321111111 1
Q ss_pred eeceeEEEeecCCCC-eEEEEEeCCCcEEEEecCCCeeEEEcc-ccccccCCEEEecCCCC----------------ccc
Q 003012 510 IQGAVVAADINDDGK-IELVTTDTHGNVAAWTAEGKGIWEQHL-KSLVTQGPSIGDVDGDG----------------HSD 571 (857)
Q Consensus 510 i~ss~~vaD~DGDG~-~DLvv~~~~G~l~~~~~~G~~~W~~~~-~~~~~~~vavgDlDGDG----------------~~D 571 (857)
....+....+..|+. .-|+.++.++.+.+|+......|.... .......+....+..++ ..-
T Consensus 102 h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (316)
T 3bg1_A 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR 181 (316)
T ss_dssp CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB
T ss_pred CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccce
Confidence 112344455555521 236777788999999876554554211 10000011111111111 013
Q ss_pred EEEEecCCcEEEEECCCCC---eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCC---c--e
Q 003012 572 VVVPTLSGNIYVLSGKDGS---KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTS---C--A 643 (857)
Q Consensus 572 Lvv~t~~G~I~~l~~~~G~---~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g---~--~ 643 (857)
|+.++.++.|.+|+...+. ....+ .. -...+.-..+..++ +....-|+.++.++.+.+++..+. . .
T Consensus 182 l~sgs~D~~v~lWd~~~~~~~~~~~~l--~~---h~~~V~~v~~sp~~-~~~~~~las~s~D~~v~iw~~~~~~~~~~~~ 255 (316)
T 3bg1_A 182 FASGGCDNLIKLWKEEEDGQWKEEQKL--EA---HSDWVRDVAWAPSI-GLPTSTIASCSQDGRVFIWTCDDASSNTWSP 255 (316)
T ss_dssp EECCBTTSBCCEEEECTTSCEEEEECC--BC---CSSCEEEEECCCCS-SCSCCEEEEEETTCEEEEEECSSTTCCCCBC
T ss_pred EEEecCCCeEEEEEeCCCCccceeeec--cc---CCCceEEEEecCCC-CCCCceEEEEcCCCeEEEEEccCccccchhh
Confidence 5556667888888754332 11111 11 12234445554321 001245788899999888875441 1 1
Q ss_pred EEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 644 DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 644 ~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
..+.. .-..+....+..||.. |+.++.+|.|.+|+..
T Consensus 256 ~~~~~---~~~~v~~v~~sp~g~~-las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 256 KLLHK---FNDVVWHVSWSITANI-LAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEE---CSSCEEEEEECTTTCC-EEEEESSSCEEEEEEC
T ss_pred hhhhc---CCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEEC
Confidence 11111 0123444568888864 7778899999999863
No 165
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.41 E-value=17 Score=38.87 Aligned_cols=218 Identities=11% Similarity=0.106 Sum_probs=116.0
Q ss_pred cccEEEecCCCCCccEEEEeeCCeEEEEeC-CCce-----------eeeeeeeccc--------eeceeEEEeecCCCC-
Q 003012 466 SSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKI-----------REKFPLEMAE--------IQGAVVAADINDDGK- 524 (857)
Q Consensus 466 sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~-----------~~~~~~~~g~--------i~ss~~vaD~DGDG~- 524 (857)
..+..+.++.||.. |++++.+|.|.+++. ++.. ...+.....+ +...+....+..++.
T Consensus 29 ~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 29 DIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp GSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred CcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 34667788888853 667778899998883 3331 1111111000 013355566677764
Q ss_pred eEEEEEeCCCcEEEEecCC-CeeEE-------------------------------E------ccccccccCCEEEecCC
Q 003012 525 IELVTTDTHGNVAAWTAEG-KGIWE-------------------------------Q------HLKSLVTQGPSIGDVDG 566 (857)
Q Consensus 525 ~DLvv~~~~G~l~~~~~~G-~~~W~-------------------------------~------~~~~~~~~~vavgDlDG 566 (857)
.-++.++.++.+.+|+... ..... . .........+....+..
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 4677788889999997522 11100 0 00011222344456666
Q ss_pred CCcccEEEEecCCcEEEEECCCC-Ceecccccc--cCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce
Q 003012 567 DGHSDVVVPTLSGNIYVLSGKDG-SKVRPYPYR--THGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA 643 (857)
Q Consensus 567 DG~~DLvv~t~~G~I~~l~~~~G-~~~~~~~~~--~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~ 643 (857)
||. +++...++.|.+|+..++ ......... ........+....++. +|..-|++++.+|.+.+++-..+..
T Consensus 188 ~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 188 DYE--TYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP----NSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp TSS--EEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS----SCTTEEEEEETTSCEEEEETTTCSS
T ss_pred CCC--EEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC----CCCcEEEEEeCCCeEEEEECcCCcc
Confidence 665 344347889999987632 222111000 0011123455556653 3445688889999999998665542
Q ss_pred -----EEEEeCCcc---------eeeEEEEeecCCCCccEEEEecCCcEEEEeCCCCCCCccc
Q 003012 644 -----DVVDIGETS---------YSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAPHHPLKA 692 (857)
Q Consensus 644 -----~~i~~g~~~---------~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~~~pl~~ 692 (857)
..+...... ...+....+..||.. |++++. |.|.+|+......+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-l~~~~~-~~v~iwd~~~~~~~~~~ 322 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRY-MMTRDY-LSVKVWDLNMENRPVET 322 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSE-EEEEES-SEEEEEETTCCSSCSCC
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCE-EEEeeC-CeEEEEeCCCCccccce
Confidence 222111110 013445567888864 555566 99999998653344433
No 166
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=91.38 E-value=15 Score=38.15 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=108.6
Q ss_pred EecCCCCCccEEEEeeCCeEEEEeCCC-ceeeeeeeec-cceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeE
Q 003012 471 VDLDGDGNLDILVGTSFGLFYVLDHHG-KIREKFPLEM-AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIW 547 (857)
Q Consensus 471 aDlDGDG~~DIvVg~~~G~Lyv~~~dG-~~~~~~~~~~-g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W 547 (857)
..+..++..-|+.++.++.|.+++..+ ......++.. ..-...+....+..||.. |+.++.++.+.+|+. +|+..-
T Consensus 23 l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-l~s~s~D~~v~~wd~~~~~~~~ 101 (319)
T 3frx_A 23 LATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-ALSASWDKTLRLWDVATGETYQ 101 (319)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEE
T ss_pred EEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE-EEEEeCCCEEEEEECCCCCeeE
Confidence 344444434466677788888877422 1111112111 111234555667788864 677788999999986 554432
Q ss_pred EEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEE
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT 627 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~ 627 (857)
... .....+...+++.+|.. |+.++.++.+.+|+.. +..+..+.. .......+.+..... ..+...-++.+
T Consensus 102 ~~~---~h~~~v~~~~~~~~~~~-l~s~s~D~~i~vwd~~-~~~~~~~~~--h~~~v~~~~~~~~~~--~~~~~~~l~s~ 172 (319)
T 3frx_A 102 RFV---GHKSDVMSVDIDKKASM-IISGSRDKTIKVWTIK-GQCLATLLG--HNDWVSQVRVVPNEK--ADDDSVTIISA 172 (319)
T ss_dssp EEE---CCSSCEEEEEECTTSCE-EEEEETTSCEEEEETT-SCEEEEECC--CSSCEEEEEECCC--------CCEEEEE
T ss_pred EEc---cCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECC-CCeEEEEec--cCCcEEEEEEccCCC--CCCCccEEEEE
Confidence 221 11223445567776642 6667788999999864 433322111 111111111111000 01123457888
Q ss_pred ecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 628 SFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 628 s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+.++.+.+++.........-.+. ...+....+..||.. |+.++.+|.|.+|+...
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~-l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTL-IASAGKDGEIMLWNLAA 227 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSE-EEEEETTCEEEEEETTT
T ss_pred eCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCC
Confidence 88999888887655433221221 112334457778763 66778999999999754
No 167
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.27 E-value=18 Score=38.76 Aligned_cols=163 Identities=12% Similarity=0.150 Sum_probs=90.7
Q ss_pred eEEEeecCCCCeEEEEEeCCCcEEEEecC-CCeeEEEc-c----ccccccCCEEEecCCCCcccEEEEecCCcEEEEECC
Q 003012 514 VVAADINDDGKIELVTTDTHGNVAAWTAE-GKGIWEQH-L----KSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 514 ~~vaD~DGDG~~DLvv~~~~G~l~~~~~~-G~~~W~~~-~----~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~ 587 (857)
+....+..||.. |+.+ .++.+.+|+.. +...+..- . .......+....+..+|..-|+.++.+|.|.+|+..
T Consensus 180 v~~~~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 180 INSISINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCEEEECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred eEEEEEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 455667777753 4444 68899999875 43333311 0 112233456667788875557888889999999987
Q ss_pred CCCe----ecccccccCC-------ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC-Cce-EEEEeCCccee
Q 003012 588 DGSK----VRPYPYRTHG-------RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT-SCA-DVVDIGETSYS 654 (857)
Q Consensus 588 ~G~~----~~~~~~~~~g-------~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~-g~~-~~i~~g~~~~s 654 (857)
++.. ...+...... ....++....+.. +|. -|++++. +.+.+++-.. +.. ..+.......+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g~-~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~ 331 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH----SGR-YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS 331 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT----TSS-EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECC----CCC-EEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence 7764 2211111100 0001455556653 333 3566666 9898888654 322 12211111000
Q ss_pred ------------eEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 655 ------------MVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 655 ------------~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
......+..||.. |+.++.+|.|++|+..+
T Consensus 332 ~l~~~~~~~~i~~~~~~~~s~~~~~-l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 332 KLCSLYENDCIFDKFECCWNGSDSV-VMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp THHHHHHTSGGGCCCCEEECTTSSE-EEEECSTTEEEEEETTT
T ss_pred cccccccccccccceEEEECCCCCE-EEEeccCCEEEEEEcCC
Confidence 0011246777754 67788999999999754
No 168
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=91.23 E-value=19 Score=39.04 Aligned_cols=216 Identities=11% Similarity=0.096 Sum_probs=119.1
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecC--CCCCccEEEEeeCCeEEEEeC-CCceeeeee-----
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLD--GDGNLDILVGTSFGLFYVLDH-HGKIREKFP----- 504 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlD--GDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~----- 504 (857)
|.+..||..+++........ .......++. .+| .-++.++.++.+.+++- .+.......
T Consensus 183 g~i~vwd~~~~~~~~~~~~h------------~~~v~~l~~~~~~~~-~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 249 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGH------------NSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249 (464)
T ss_dssp SCEEEEETTTTEEEEEECCC------------SSCEEEEEEEESSSC-EEEEEEETTSCEEEEECCCCCCC------CCS
T ss_pred CCEEEEECCCCcEEEEECCC------------CCccEEEEEecCCCC-CEEEEEcCCCcEEEeeCCCCcccccccccCCc
Confidence 67899999988765543211 0122333333 333 34667777888988884 333221100
Q ss_pred -------------eec-cceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCc
Q 003012 505 -------------LEM-AEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGH 569 (857)
Q Consensus 505 -------------~~~-g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~ 569 (857)
... ......+... ..+|. -+++++.++.+.+|+. +++....... ....+....++.||.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~~ 323 (464)
T 3v7d_B 250 PLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERK 323 (464)
T ss_dssp SEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEETTTT
T ss_pred ceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEEECCCCcEEEEecC---CCCCEEEEEEcCCCC
Confidence 000 0001112222 22332 4777788899999986 5555544321 112233344555654
Q ss_pred ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeC
Q 003012 570 SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIG 649 (857)
Q Consensus 570 ~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g 649 (857)
-++.++.+|.|.+|+..+|+.+..+... ..++....+++ .-+++++.+|.+.+++-.++........
T Consensus 324 -~l~sg~~dg~i~vwd~~~~~~~~~~~~h-----~~~v~~~~~~~-------~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 390 (464)
T 3v7d_B 324 -RCISASMDTTIRIWDLENGELMYTLQGH-----TALVGLLRLSD-------KFLVSAAADGSIRGWDANDYSRKFSYHH 390 (464)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECS-------SEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred -EEEEEeCCCcEEEEECCCCcEEEEEeCC-----CCcEEEEEEcC-------CEEEEEeCCCcEEEEECCCCceeeeecC
Confidence 3777788999999998888776543321 12333444432 3578889999999998776544332211
Q ss_pred CcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 650 ETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 650 ~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
..... .. -+..||. ++++..+|.+.+|+..+
T Consensus 391 ~~~~~-~~--~~~~~~~--~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 391 TNLSA-IT--TFYVSDN--ILVSGSENQFNIYNLRS 421 (464)
T ss_dssp TTCCC-EE--EEEECSS--EEEEEETTEEEEEETTT
T ss_pred CCCcc-EE--EEEeCCC--EEEEecCCeEEEEECCC
Confidence 11111 11 2344554 56555589999999754
No 169
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.20 E-value=15 Score=37.61 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=112.7
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeE
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIW 547 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W 547 (857)
+....+..||. -|+.++.++.+.+++............ .........+..++. -|+.++.++.+.+|+..+....
T Consensus 89 V~~~~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 89 VSDVVISSDGQ-FALSGSWDGTLRLWDLTTGTTTRRFVG---HTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEE
T ss_pred EEEEEECCCCC-EEEEEcccccceEEeecccceeeeecC---CCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceE
Confidence 45566778875 366677788888887544322211111 111233333444443 3667778889999987665544
Q ss_pred EEccccccccCCEEEecCCCCcccEEE-EecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEE
Q 003012 548 EQHLKSLVTQGPSIGDVDGDGHSDVVV-PTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVT 626 (857)
Q Consensus 548 ~~~~~~~~~~~vavgDlDGDG~~DLvv-~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv 626 (857)
...... ....+....+..++...+++ +..++.+.+|+..+++....+... ..++....+.. +| .-|++
T Consensus 164 ~~~~~~-~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h-----~~~v~~~~~s~----~~-~~l~s 232 (340)
T 4aow_A 164 TVQDES-HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH-----TGYLNTVTVSP----DG-SLCAS 232 (340)
T ss_dssp EECSSS-CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCEEEEEECT----TS-SEEEE
T ss_pred EEEecc-ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC-----CCcEEEEEECC----CC-CEEEE
Confidence 433221 12233444555555555544 456788999998877765433211 12344445543 23 35778
Q ss_pred EecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 627 TSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 627 ~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
++.+|.+.+++-.............. +...-+..++ .+++++.++.|.+|+..+
T Consensus 233 ~s~Dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~~~~~--~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 233 GGKDGQAMLWDLNEGKHLYTLDGGDI---INALCFSPNR--YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EETTCEEEEEETTTTEEEEEEECSSC---EEEEEECSSS--SEEEEEETTEEEEEETTT
T ss_pred EeCCCeEEEEEeccCceeeeecCCce---EEeeecCCCC--ceeeccCCCEEEEEECCC
Confidence 88999999988776544332222222 2222345555 478888899999998743
No 170
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=91.18 E-value=6.7 Score=45.00 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=100.5
Q ss_pred EEEEeeCCeEEEEeC-CCceee------eeeee-ccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecC-CC-eeEEEc
Q 003012 481 ILVGTSFGLFYVLDH-HGKIRE------KFPLE-MAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAE-GK-GIWEQH 550 (857)
Q Consensus 481 IvVg~~~G~Lyv~~~-dG~~~~------~~~~~-~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~-G~-~~W~~~ 550 (857)
|+.++.+|.|.+++- .+.... ..+.. ...-...+...++..++ -|+.++.+|.+.+|+.. +. ......
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~ 305 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQ 305 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEE
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEee
Confidence 444667888888884 332110 00000 00112345667776554 48889999999999874 42 222111
Q ss_pred cccccccCCEEE--ecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe
Q 003012 551 LKSLVTQGPSIG--DVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS 628 (857)
Q Consensus 551 ~~~~~~~~vavg--DlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s 628 (857)
. ....+.-. -+..||..=|+.++.++.+.+|+..+++....+.....+.....+ .++. ++. .+++++
T Consensus 306 ~---H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v---~fsp----~~~-~l~s~~ 374 (524)
T 2j04_B 306 V---HDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPV---VYCP----QIY-SYIYSD 374 (524)
T ss_dssp C---SSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCE---EEET----TTT-EEEEEC
T ss_pred c---ccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccce---EeCC----CcC-eEEEeC
Confidence 1 11112211 345555323566777899999987655432211111111001122 2332 233 377778
Q ss_pred cCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 629 FDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 629 ~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.++.+.+++...+.....-.+ ....+....+..||.. |+.++.+|.|.+|+...
T Consensus 375 ~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~-l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 375 GASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPM-VLAGSADGSLIITNAAR 428 (524)
T ss_dssp SSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCB-CEEEETTTEEECCBSCS
T ss_pred CCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCe-EEEEECCCEEEEEechH
Confidence 888888888666543221111 1122444457788864 77889999999998743
No 171
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=90.80 E-value=20 Score=38.63 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=115.3
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecccee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
.|.|.+|+..+++........ . ........| +. -++.++.++.+.+++..........+. ...
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h--------~----~~v~~~s~~--~~-~l~sgs~d~~i~~~d~~~~~~~~~~~~--~h~ 230 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSH--------S----ARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLS--GHS 230 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCC--------S----SCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE--CCS
T ss_pred CCeEEEEEcCCCcEEEEEeCC--------C----CceEEEeeC--CC-EEEEEeCCCceeEeeecccceeeEEec--ccc
Confidence 367999999998876654321 0 111222333 32 355566678888877433211111111 112
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEE-ccccccccCCEEEecCCCCcccEEEE--ecCCcEEEEECC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQ-HLKSLVTQGPSIGDVDGDGHSDVVVP--TLSGNIYVLSGK 587 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~-~~~~~~~~~vavgDlDGDG~~DLvv~--t~~G~I~~l~~~ 587 (857)
..+....+..+|. -++.+..++.+.+|+. .+...+.. .........+....+..++..-++++ +.++.|.+|+..
T Consensus 231 ~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 231 QEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred cceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 2344555666665 3666677888888875 34332211 00011112223333444333333333 347889999988
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe--cCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCC
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS--FDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGD 665 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s--~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG 665 (857)
+|.....+.. ... +...-+.. ++ ..++++. .++.+++++-.++.....-.+. ...+....+..||
T Consensus 310 t~~~~~~~~~--~~~----v~~~~~~~----~~-~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH--~~~V~~l~~spdg 376 (420)
T 4gga_A 310 SGACLSAVDA--HSQ----VCSILWSP----HY-KELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDG 376 (420)
T ss_dssp TTEEEEEEEC--SSC----EEEEEEET----TT-TEEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTS
T ss_pred ccccceeecc--ccc----eeeeeecC----CC-CeEEEEEecCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCC
Confidence 8876544322 211 11111221 22 2344443 5788998887765443221221 1234444578888
Q ss_pred CccEEEEecCCcEEEEeCC
Q 003012 666 DLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 666 ~~DLvv~t~~G~V~~~~~~ 684 (857)
.. |+.++.||.|.+|+..
T Consensus 377 ~~-l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 377 AT-VASAAADETLRLWRCF 394 (420)
T ss_dssp SC-EEEEETTTEEEEECCS
T ss_pred CE-EEEEecCCeEEEEECC
Confidence 75 7778899999999863
No 172
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=90.49 E-value=17 Score=37.10 Aligned_cols=202 Identities=13% Similarity=0.105 Sum_probs=95.8
Q ss_pred cEEEecCCCCCccEEEEee-CCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEe-CCCcEEEEecC--
Q 003012 468 PTVVDLDGDGNLDILVGTS-FGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTD-THGNVAAWTAE-- 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~-~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~-~~G~l~~~~~~-- 542 (857)
+....++.||.. |+++.. ++.|++++. +|.......... ....+....++.||.. |++++ .++.+.+|+..
T Consensus 86 ~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 86 LTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNRT-LWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp CSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSSE-EEEEEGGGTEEEEEEECTT
T ss_pred CcEEEEcCCCCE-EEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCCE-EEEecCCCCEEEEEEecCC
Confidence 444556778764 545543 667887774 443221111110 1112333446677764 44554 67889998763
Q ss_pred CCeeEEE--ccccccccCCEEEecCCCCcccEEEEe-cCCcEEEEECC--CCCeecccccc--cCC-ccccceEEEeccC
Q 003012 543 GKGIWEQ--HLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGK--DGSKVRPYPYR--THG-RVMNQVLLVDLTK 614 (857)
Q Consensus 543 G~~~W~~--~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~l~~~--~G~~~~~~~~~--~~g-~~~s~~~v~DlDg 614 (857)
|...... .........+....++.||.. ++++. .++.+.+|+.. +|......... ..+ .....+...-++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~-l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 240 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQY-AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP 240 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSE-EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCE-EEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence 4432211 111112223444567777763 44444 57888888863 35432111111 000 0011122233432
Q ss_pred CCCCCCCeEEEEEecCCeEEEEcCC--CCceEE---EEeCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeC
Q 003012 615 RGEKSKGLTIVTTSFDGYLYLIDGP--TSCADV---VDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFST 683 (857)
Q Consensus 615 Dg~gDG~~DLvv~s~dG~ly~~dg~--~g~~~~---i~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~ 683 (857)
||..-++....++.+++++-. ++.... +..+.. +....++.||+. |+++. .++.+.+|..
T Consensus 241 ----dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~-l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 241 ----DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ----PRGFNVDHSGKY-LIAAGQKSHHISVYEI 306 (343)
T ss_dssp ----TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS----CCCEEECTTSSE-EEEECTTTCEEEEEEE
T ss_pred ----CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc----cceEEECCCCCE-EEEecCCCCeEEEEEE
Confidence 343333334457777777644 333332 222222 222236677753 56665 5678888854
No 173
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=90.38 E-value=17 Score=37.15 Aligned_cols=217 Identities=14% Similarity=0.159 Sum_probs=114.0
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeC-CCce-eeeeeeecc
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDH-HGKI-REKFPLEMA 508 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~-dG~~-~~~~~~~~g 508 (857)
.+.|..||..+++........ ...+ ...++.||.. ++++.. ++.|++++. +|+. .......
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~------------~~~~-~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-- 82 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLG------------YDFV-DTAITSDCSN-VVVTSDFCQTLVQIETQLEPPKVVAIQEG-- 82 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECC------------CCEE-EEEECSSSCE-EEEEESTTCEEEEEECSSSSCEEEEEEEC--
T ss_pred CCeEEEEeCcccceeeeEEcc------------CCcc-eEEEcCCCCE-EEEEeCCCCeEEEEECCCCceeEEecccC--
Confidence 367999999999886665432 1123 5667888873 444444 678999985 5654 3222221
Q ss_pred ceeceeEE-EeecCCCCeEEEEEeCC-C--cEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCc-E
Q 003012 509 EIQGAVVA-ADINDDGKIELVTTDTH-G--NVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGN-I 581 (857)
Q Consensus 509 ~i~ss~~v-aD~DGDG~~DLvv~~~~-G--~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~-I 581 (857)
. .+.. ..++.||..=+ +.... + .+.+|+. +++....... ...+.-.-++.||.. ++++.. ++. +
T Consensus 83 ~---~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~spdg~~-l~~~~~~~~~~i 153 (331)
T 3u4y_A 83 Q---SSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPI----PYDAVGIAISPNGNG-LILIDRSSANTV 153 (331)
T ss_dssp S---SCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEEC----CTTEEEEEECTTSSC-EEEEEETTTTEE
T ss_pred C---CCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEEC----CCCccceEECCCCCE-EEEEecCCCceE
Confidence 1 1222 34567776533 44333 2 7888986 4444333221 123344557778865 666544 466 7
Q ss_pred EEEECC-CCCeecc-cccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCce----EEEEeCCcceee
Q 003012 582 YVLSGK-DGSKVRP-YPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCA----DVVDIGETSYSM 655 (857)
Q Consensus 582 ~~l~~~-~G~~~~~-~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~----~~i~~g~~~~s~ 655 (857)
+.|+-. +|..... ......+ ..+.-..++. ||..-++....++.+++++..++.. ..+..+....
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~sp----dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~-- 224 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISGG---TRPFNITFTP----DGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPG-- 224 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECSS---SSEEEEEECT----TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCC--
T ss_pred EEEEECCCCcEeecCCccccCC---CCccceEECC----CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCc--
Confidence 766643 2332211 0000111 1233334442 4444344444578888888766543 2233332221
Q ss_pred EEEEeecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 656 VLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 656 ~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
...+..||+. |++++ .++.|++|+..+
T Consensus 225 --~~~~spdg~~-l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 225 --TIVVSRDGST-VYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp --CEEECTTSSE-EEEECSSEEEEEEEETTT
T ss_pred --eEEECCCCCE-EEEEEcCCCEEEEEECCC
Confidence 1236778764 44543 456788888643
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=90.14 E-value=18 Score=36.86 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=89.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee------------------CCeEEEEe
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS------------------FGLFYVLD 494 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~------------------~G~Lyv~~ 494 (857)
+.|+.|+..+|+........ .......+.-.-++.||. +++... .+.||.++
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~--------~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSF--------EGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp TEEEEECSTTCCEEEEECEE--------TTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CeEEEEcCCCCcEEEEeecc--------CCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 46888998888764432110 011111222233566774 666421 35788888
Q ss_pred CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec--CCCe-eEEEcc--ccccccCCEEEecCCCCc
Q 003012 495 HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA--EGKG-IWEQHL--KSLVTQGPSIGDVDGDGH 569 (857)
Q Consensus 495 ~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~--~G~~-~W~~~~--~~~~~~~vavgDlDGDG~ 569 (857)
.+|+.... . .. ...+...-++.||+.= +.....+.+++|+. +|.. .-.... .......+ -+|.||.
T Consensus 160 ~~g~~~~~---~-~~-~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i---~~d~~G~ 230 (296)
T 3e5z_A 160 PDGTLSAP---I-RD-RVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGL---RVDAGGL 230 (296)
T ss_dssp TTSCEEEE---E-CC-CSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSE---EEBTTSC
T ss_pred CCCCEEEe---e-cC-CCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeE---EECCCCC
Confidence 77664321 1 11 1122333457778654 55555678888876 3443 111111 11112222 2456664
Q ss_pred ccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc
Q 003012 570 SDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642 (857)
Q Consensus 570 ~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~ 642 (857)
|++++ ++.|+.|+.. |+.+..+.. ... ...+.+.. +....|++++. +.+|.++.++..
T Consensus 231 --l~v~~-~~~v~~~~~~-g~~~~~~~~--~~~-~~~~~f~~-------~d~~~L~v~t~-~~l~~~~~~~~~ 288 (296)
T 3e5z_A 231 --IWASA-GDGVHVLTPD-GDELGRVLT--PQT-TSNLCFGG-------PEGRTLYMTVS-TEFWSIETNVRG 288 (296)
T ss_dssp --EEEEE-TTEEEEECTT-SCEEEEEEC--SSC-CCEEEEES-------TTSCEEEEEET-TEEEEEECSCCB
T ss_pred --EEEEc-CCeEEEECCC-CCEEEEEEC--CCC-ceeEEEEC-------CCCCEEEEEcC-CeEEEEEccccc
Confidence 78877 7889999874 776544332 222 33333331 12235777665 457777765543
No 175
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=90.14 E-value=41 Score=41.06 Aligned_cols=183 Identities=13% Similarity=0.135 Sum_probs=105.4
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ 511 (857)
|.|..|+..+++......- -..+....+.. |. -|+.++.++.|.+++ .+|+.+..+.. .
T Consensus 39 g~I~lw~~~~~~~~~~~~~-------------~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~~-----~ 98 (902)
T 2oaj_A 39 GEVHIYGQQQVEVVIKLED-------------RSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVFV-----P 98 (902)
T ss_dssp SEEEEECSTTCEEEEECSS-------------CCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEEC-----S
T ss_pred CEEEEEeCCCcEEEEEcCC-------------CCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEcC-----C
Confidence 6688888876655332110 01233344444 44 466677788999998 46665544421 1
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee--EEE-------ccccccccCCEEEecCCCCcccEEEEecCCcEE
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI--WEQ-------HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIY 582 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~--W~~-------~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~ 582 (857)
..+....++.||.. |+++..+|.+.+|+..+... +.. .........+....++.++..-++++..+|.+
T Consensus 99 ~~V~~v~~sp~g~~-l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v- 176 (902)
T 2oaj_A 99 GKITSIDTDASLDW-MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL- 176 (902)
T ss_dssp SCEEEEECCTTCSE-EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-
T ss_pred CCEEEEEECCCCCE-EEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-
Confidence 34666778888864 77888899999998754432 211 00011122333344555443447777788888
Q ss_pred EEECCCCCeeccccccc-----CC--------ccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCc
Q 003012 583 VLSGKDGSKVRPYPYRT-----HG--------RVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSC 642 (857)
Q Consensus 583 ~l~~~~G~~~~~~~~~~-----~g--------~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~ 642 (857)
+|+-.+++....+.... .+ .-...+....+.. || .-|+.++.+|.+.+++..++.
T Consensus 177 lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp----dg-~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 177 TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP----NS-LHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT----TS-SEEEEEETTCCEEEEETTTCC
T ss_pred EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC----CC-CEEEEEECCCeEEEEECCCCc
Confidence 99987776554332210 00 0013355556653 22 357888889988888876553
No 176
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=89.84 E-value=19 Score=36.82 Aligned_cols=205 Identities=14% Similarity=0.111 Sum_probs=103.7
Q ss_pred EEEecCCCCCccEEEEeeCCeEEEEeCCC-ceeeeeeeeccceeceeEEEeecC--CCCeEEEEEeCCCcEEEEecC-CC
Q 003012 469 TVVDLDGDGNLDILVGTSFGLFYVLDHHG-KIREKFPLEMAEIQGAVVAADIND--DGKIELVTTDTHGNVAAWTAE-GK 544 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~~~G~Lyv~~~dG-~~~~~~~~~~g~i~ss~~vaD~DG--DG~~DLvv~~~~G~l~~~~~~-G~ 544 (857)
..+.++.||.. |+.++.++.|.+++..+ .......+. + -...+....+.. +|. -|+.++.++.+.+|+.. |.
T Consensus 13 ~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~~l~-g-H~~~V~~v~~s~~~~g~-~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 13 HDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLIDTLT-G-HEGPVWRVDWAHPKFGT-ILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp EEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCEEEC-C-CSSCEEEEEECCGGGCS-EEEEEETTTEEEEEEBSSSC
T ss_pred EEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEEEEc-c-ccCCeEEEEecCCCcCC-EEEEEcCCCEEEEEEcCCCc
Confidence 34556777764 67777788899888533 211111111 1 122344445543 243 47777889999999864 32
Q ss_pred --eeEEEccccccccCCEEEecCCC--CcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCC---
Q 003012 545 --GIWEQHLKSLVTQGPSIGDVDGD--GHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGE--- 617 (857)
Q Consensus 545 --~~W~~~~~~~~~~~vavgDlDGD--G~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~--- 617 (857)
...... .....+....+..+ |. -|+.++.++.+.+|+..++........... ...+....+..+..
T Consensus 89 ~~~~~~~~---~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 89 WSQIAVHA---VHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSPIIIDAH---AIGVNSASWAPATIEED 161 (297)
T ss_dssp BCCCEEEC---CCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCCEEEECC---SSCEEEEEECCCC----
T ss_pred eEEEEEee---cCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceeeeeeecc---cCccceEeecCCccccc
Confidence 111111 11123334445444 32 366777889999998765432111111111 11222223321100
Q ss_pred --C---CCCeEEEEEecCCeEEEEcCCCCceE--E-EEeCCcceeeEEEEeecCCC--CccEEEEecCCcEEEEeCCC
Q 003012 618 --K---SKGLTIVTTSFDGYLYLIDGPTSCAD--V-VDIGETSYSMVLADNVDGGD--DLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 618 --g---DG~~DLvv~s~dG~ly~~dg~~g~~~--~-i~~g~~~~s~~~a~DlDGDG--~~DLvv~t~~G~V~~~~~~~ 685 (857)
+ ....-|++++.++.+.+++-..+... . ..+.. ....+....+..|| ..-|+.++.+|.|.+|+...
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~-H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecC-CCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 0 01235788888998877765443211 1 11111 11234445577776 23366678899999998643
No 177
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=88.63 E-value=25 Score=36.47 Aligned_cols=220 Identities=10% Similarity=0.069 Sum_probs=116.3
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecccee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
++.|..||..+++......- + ...+...+++.+|. -|+.++.++.+.+++..+............+
T Consensus 86 D~~v~~wd~~~~~~~~~~~~-----------h-~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v- 151 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVG-----------H-KSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQCLATLLGHNDWV- 151 (319)
T ss_dssp TSEEEEEETTTTEEEEEEEC-----------C-SSCEEEEEECTTSC-EEEEEETTSCEEEEETTSCEEEEECCCSSCE-
T ss_pred CCEEEEEECCCCCeeEEEcc-----------C-CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeEEEEeccCCcE-
Confidence 36799999998876433221 1 12345566777775 3666777888999987666443222111111
Q ss_pred ceeEEEe---ecCCCCeEEEEEeCCCcEEEEecC-CCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECC
Q 003012 512 GAVVAAD---INDDGKIELVTTDTHGNVAAWTAE-GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGK 587 (857)
Q Consensus 512 ss~~vaD---~DGDG~~DLvv~~~~G~l~~~~~~-G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~ 587 (857)
..+.+.. .+.|+ .-|+.++.++.+.+|+.. +....... .....+....+..||.. |+.++.+|.|.+|+..
T Consensus 152 ~~~~~~~~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~---~h~~~v~~~~~sp~g~~-l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 152 SQVRVVPNEKADDDS-VTIISAGNDKMVKAWNLNQFQIEADFI---GHNSNINTLTASPDGTL-IASAGKDGEIMLWNLA 226 (319)
T ss_dssp EEEEECCC------C-CEEEEEETTSCEEEEETTTTEEEEEEC---CCCSCEEEEEECTTSSE-EEEEETTCEEEEEETT
T ss_pred EEEEEccCCCCCCCc-cEEEEEeCCCEEEEEECCcchhheeec---CCCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECC
Confidence 1122211 01122 247777888999999864 33222211 11223344556667753 6667788999999988
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEE-EEeCCc-----ceeeEEEEee
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADV-VDIGET-----SYSMVLADNV 661 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~-i~~g~~-----~~s~~~a~Dl 661 (857)
+++.+..+.. . .++....+.. +| .-++++..++ +.+++-..+.... +..... ....+....+
T Consensus 227 ~~~~~~~~~~--~----~~v~~~~~sp----~~-~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 227 AKKAMYTLSA--Q----DEVFSLAFSP----NR-YWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp TTEEEEEEEC--C----SCEEEEEECS----SS-SEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred CCcEEEEecC--C----CcEEEEEEcC----CC-CEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 7776543321 1 2333444542 22 2344444433 3333322222111 111000 1112334458
Q ss_pred cCCCCccEEEEecCCcEEEEeC
Q 003012 662 DGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 662 DGDG~~DLvv~t~~G~V~~~~~ 683 (857)
..||+. |+.++.+|.|.+|+.
T Consensus 295 spdg~~-l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 295 SADGQT-LFAGYTDNVIRVWQV 315 (319)
T ss_dssp CTTSSE-EEEEETTSCEEEEEE
T ss_pred CCCCCE-EEEeecCceEEEEEE
Confidence 888874 777889999999985
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=87.91 E-value=27 Score=35.99 Aligned_cols=223 Identities=13% Similarity=0.150 Sum_probs=104.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeC-----CeEEEEeCCCceeeeeeeec
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSF-----GLFYVLDHHGKIREKFPLEM 507 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~-----G~Lyv~~~dG~~~~~~~~~~ 507 (857)
+.|+.++.++++..-..... ...+.-.-++.||. ++++... +.|+.++.++.........
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~------------~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~- 130 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSH------------KANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIED- 130 (333)
T ss_dssp CEEEEECTTTCCEEEEEECS------------SSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECS-
T ss_pred CEEEEEeCCCCcEEEEeeCC------------CCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-
Confidence 56889999888754322110 01243444667774 6666654 3799998655433211110
Q ss_pred cceeceeEEEeecCCCCeEEEEEeCC-------CcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCC
Q 003012 508 AEIQGAVVAADINDDGKIELVTTDTH-------GNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSG 579 (857)
Q Consensus 508 g~i~ss~~vaD~DGDG~~DLvv~~~~-------G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G 579 (857)
......+...-++.||. ++++... +.++.++..+...-..... ...+.-.-++.||.. |+++. .++
T Consensus 131 ~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~-l~v~~~~~~ 204 (333)
T 2dg1_A 131 LSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKV-LWVTETTAN 204 (333)
T ss_dssp SSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSE-EEEEEGGGT
T ss_pred CccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCE-EEEEeCCCC
Confidence 01112344444567774 5666542 4677777654322111100 011222335566642 44543 467
Q ss_pred cEEEEECC-CCCeecccc----cccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCceEEEEeCCcc-
Q 003012 580 NIYVLSGK-DGSKVRPYP----YRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCADVVDIGETS- 652 (857)
Q Consensus 580 ~I~~l~~~-~G~~~~~~~----~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~~i~~g~~~- 652 (857)
.|+.|+.. +|.....+. ....+. ..+.-.-++ .+| .+++++. ++.+++++..+.....+......
T Consensus 205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~--~~~~~i~~d----~~G--~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~ 276 (333)
T 2dg1_A 205 RLHRIALEDDGVTIQPFGATIPYYFTGH--EGPDSCCID----SDD--NLYVAMYGQGRVLVFNKRGYPIGQILIPGRDE 276 (333)
T ss_dssp EEEEEEECTTSSSEEEEEEEEEEECCSS--SEEEEEEEB----TTC--CEEEEEETTTEEEEECTTSCEEEEEECTTGGG
T ss_pred eEEEEEecCCCcCcccccceEEEecCCC--CCCCceEEC----CCC--CEEEEEcCCCEEEEECCCCCEEEEEEcCCCcc
Confidence 88888864 344322110 000110 111112222 133 3666654 57788888754444444443220
Q ss_pred --eeeEEEEeecCCCCccEEEEecCC------cEEEEeCCC
Q 003012 653 --YSMVLADNVDGGDDLDLIVTTMNG------NVFCFSTPA 685 (857)
Q Consensus 653 --~s~~~a~DlDGDG~~DLvv~t~~G------~V~~~~~~~ 685 (857)
...+...-+..||. .|++++.+| .|+.++...
T Consensus 277 g~~~~~~~~~~~~dg~-~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 277 GHMLRSTHPQFIPGTN-QLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp TCSCBCCEEEECTTSC-EEEEEEECGGGTCCEEEEEEECSS
T ss_pred ccccCcceEEECCCCC-EEEEEeCccCCCCCceEEEEeccc
Confidence 00111112345653 477776653 566666543
No 179
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=86.79 E-value=28 Score=35.02 Aligned_cols=227 Identities=13% Similarity=0.004 Sum_probs=115.4
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccce
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEI 510 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i 510 (857)
++.|.+||..+|+......+.. + ......+.+..||. -++.++.+|.|.+++ .+|+....+.....
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~---------~-~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~-- 110 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQ---------P-GEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMTSHSA-- 110 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCS---------T-TCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSS--
T ss_pred CCEEEEEECCCCCEEEEEEecC---------C-CCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEecCccc--
Confidence 3679999999998765543321 1 12245567778885 467778889999988 56765544332211
Q ss_pred eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 511 QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
.+.....+ +. -++.+...+.+..+............. .....+....+..+|. -++.+..++.+.+|+..+|+
T Consensus 111 --~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~ 183 (318)
T 4ggc_A 111 --RVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGE 183 (318)
T ss_dssp --CEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBT
T ss_pred --eEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEc-CccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCc
Confidence 12222223 22 356666677777765532222111111 1112233444555554 36667778999999987766
Q ss_pred eecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEE
Q 003012 591 KVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLI 670 (857)
Q Consensus 591 ~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLv 670 (857)
........... ...++....+..+ +....-+..++.++.+.+.+............... +...-+..++.. ++
T Consensus 184 ~~~~~~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~---v~~~~~~~~~~~-~~ 256 (318)
T 4ggc_A 184 GGWVPLQTFTQ-HQGAVKAVAWCPW--QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSILWSPHYKE-LI 256 (318)
T ss_dssp TBSCCSEEECC-CCSCEEEEEECTT--STTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC---EEEEEEETTTTE-EE
T ss_pred ccccceeeecc-cCCceEEEEecCC--CCcEEEEEecCCCCEEEEEecccccccccccceee---eeeeeecccccc-eE
Confidence 43222111111 1122222222210 11112223444567777777665544332222221 222234455543 44
Q ss_pred EEe--cCCcEEEEeCCC
Q 003012 671 VTT--MNGNVFCFSTPA 685 (857)
Q Consensus 671 v~t--~~G~V~~~~~~~ 685 (857)
+++ .+|.|++|+..+
T Consensus 257 ~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 257 SGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp EEECTTTCCEEEEETTT
T ss_pred EEEEcCCCEEEEEECCC
Confidence 443 689999998743
No 180
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=85.70 E-value=33 Score=34.82 Aligned_cols=204 Identities=11% Similarity=0.096 Sum_probs=98.7
Q ss_pred cEEEecCCCCCccEEEEeeC-CeEEEEeC---CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-C
Q 003012 468 PTVVDLDGDGNLDILVGTSF-GLFYVLDH---HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-E 542 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~-G~Lyv~~~---dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~ 542 (857)
+....++.||.. |+++... +.+.+++- +|+......+.... .+....+..||..=++....++.+.+|+. +
T Consensus 40 ~~~~~~spdg~~-l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 115 (343)
T 1ri6_A 40 VQPMVVSPDKRY-LYVGVRPEFRVLAYRIAPDDGALTFAAESALPG---SLTHISTDHQGQFVFVGSYNAGNVSVTRLED 115 (343)
T ss_dssp CCCEEECTTSSE-EEEEETTTTEEEEEEECTTTCCEEEEEEEECSS---CCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CceEEECCCCCE-EEEeecCCCeEEEEEecCCCCceeeccccccCC---CCcEEEEcCCCCEEEEEecCCCeEEEEECCC
Confidence 344556777764 5555554 78877663 45433221222111 33444567788653333334677888876 3
Q ss_pred CCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCCcEEEEECCC-CCeeccc--ccccCCccccceEEEeccCCCCC
Q 003012 543 GKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGKD-GSKVRPY--PYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 543 G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~l~~~~-G~~~~~~--~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
|...-...... ....+....++.||.. ++++. .++.+++|+..+ |+..... ...... ...+....++.
T Consensus 116 ~~~~~~~~~~~-~~~~~~~~~~s~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p---- 187 (343)
T 1ri6_A 116 GLPVGVVDVVE-GLDGCHSANISPDNRT-LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE--GAGPRHMVFHP---- 187 (343)
T ss_dssp TEEEEEEEEEC-CCTTBCCCEECTTSSE-EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST--TCCEEEEEECT----
T ss_pred Ccccccccccc-CCCCceEEEECCCCCE-EEEecCCCCEEEEEEecCCCceeeecccccccCC--CCCcceEEECC----
Confidence 32111111100 1111222335566653 56655 678899988765 6543211 111111 12233334442
Q ss_pred CCCeEEEEEecCCeEEEEcCC--CCceEE---EEeCCcc---eeeEEEEeecCCCCccEEEEe-cCCcEEEEeCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGP--TSCADV---VDIGETS---YSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTP 684 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~--~g~~~~---i~~g~~~---~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~ 684 (857)
+|..-+++...++.+++++-. ++.... +...... ...+...-++.||+. |+++. .++.+.+|+..
T Consensus 188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~-l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH-LYACDRTASLITVFSVS 261 (343)
T ss_dssp TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE-EEEEETTTTEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE-EEEEecCCCEEEEEEEc
Confidence 344333444467777777653 333221 2111111 112333447888863 55444 67889998864
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=85.53 E-value=59 Score=37.59 Aligned_cols=233 Identities=15% Similarity=0.129 Sum_probs=124.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC---CCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH---HGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~---dG~~~~~~~~~~g~ 509 (857)
+.|.++|..++++....... ..|....+..||+. +++++.++.|++++- +++.....+. +.
T Consensus 177 ~~V~viD~~t~~v~~~i~~g-------------~~p~~v~~SpDGr~-lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~ 240 (567)
T 1qks_A 177 GQIALIDGSTYEIKTVLDTG-------------YAVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKI--GS 240 (567)
T ss_dssp TEEEEEETTTCCEEEEEECS-------------SCEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEEC--CS
T ss_pred CeEEEEECCCCeEEEEEeCC-------------CCccceEECCCCCE-EEEEcCCCeEEEEECCCCCCcEeEEEec--CC
Confidence 67999999999988765432 12445568889975 677777889999996 5555443332 32
Q ss_pred eeceeEEEeecC-CCCeEEEEEeCCCcEEEEec-CCCeeEEEcccccc-------cc-CC-EEEecCCCCcccEEEEe-c
Q 003012 510 IQGAVVAADIND-DGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLV-------TQ-GP-SIGDVDGDGHSDVVVPT-L 577 (857)
Q Consensus 510 i~ss~~vaD~DG-DG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~-------~~-~v-avgDlDGDG~~DLvv~t-~ 577 (857)
....+++-.+.+ ||+.=++.....+.+.+++. +.+.+....+.... .. .+ .+.. -.++ ..+++.. .
T Consensus 241 ~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~-s~~~-~~~vv~~~~ 318 (567)
T 1qks_A 241 EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA-SHYR-PEFIVNVKE 318 (567)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE-CSSS-SEEEEEETT
T ss_pred CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE-cCCC-CEEEEEecC
Confidence 222233322223 88876666556688888875 55555543332210 00 11 1111 1122 2333332 3
Q ss_pred CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE-EEEe-CCcce--
Q 003012 578 SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD-VVDI-GETSY-- 653 (857)
Q Consensus 578 ~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~-~i~~-g~~~~-- 653 (857)
.|.|+.++..+.+...-..+. .+. .+.-+-++ .||+.-++.....+.+.++|..++... .+.+ +....
T Consensus 319 ~g~v~~vd~~~~~~~~v~~i~-~~~---~~~d~~~~----pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 319 TGKILLVDYTDLNNLKTTEIS-AER---FLHDGGLD----GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp TTEEEEEETTCSSEEEEEEEE-CCS---SEEEEEEC----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred CCeEEEEecCCCccceeeeee-ccc---cccCceEC----CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 466666665433211100000 111 11122344 355555555666788999998877544 3555 43332
Q ss_pred eeEEEEeecCCCCccEEEEe--cCCcEEEEeCCCCCCCcccce
Q 003012 654 SMVLADNVDGGDDLDLIVTT--MNGNVFCFSTPAPHHPLKAWR 694 (857)
Q Consensus 654 s~~~a~DlDGDG~~DLvv~t--~~G~V~~~~~~~~~~pl~~W~ 694 (857)
..+.+ ++.+|.. +++.+ .++.|.++.....-|+..+|.
T Consensus 391 ~g~~~--~~p~~g~-v~~t~~~g~~~Vsvid~~~~~~~~~~~k 430 (567)
T 1qks_A 391 RGANF--VHPTFGP-VWATSHMGDDSVALIGTDPEGHPDNAWK 430 (567)
T ss_dssp TCEEE--EETTTEE-EEEEEBSSSSEEEEEECCTTTCTTTBTS
T ss_pred cceee--ECCCCCc-EEEeCCCCCCeEEEecCCCCCCccccCE
Confidence 12222 3455443 44443 357899999876566666663
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=85.49 E-value=31 Score=34.36 Aligned_cols=213 Identities=14% Similarity=0.114 Sum_probs=110.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee-CCeEEEEeCCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
+.|..++.. ++..... +. . ....|.-.-++.||. ++++.. .+.|+.++.+|+.. .+.... . .
T Consensus 36 ~~v~~~d~~-~~~~~~~-~~--~--------~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~-~~~~~~-~-~ 98 (299)
T 2z2n_A 36 NMISCINLD-GKITEYP-LP--T--------PDAKVMCLTISSDGE--VWFTENAANKIGRITKKGIIK-EYTLPN-P-D 98 (299)
T ss_dssp TEEEEECTT-CCEEEEE-CS--S--------TTCCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEE-EEECSS-T-T
T ss_pred CcEEEEcCC-CCeEEec-CC--c--------ccCceeeEEECCCCC--EEEeCCCCCeEEEECCCCcEE-EEeCCC-c-C
Confidence 568888887 6553222 11 0 012344444666764 677765 57899998776642 222211 1 1
Q ss_pred ceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCC
Q 003012 512 GAVVAADINDDGKIELVTTDT-HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDG 589 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G 589 (857)
..+...-++.||. |+++.. .+.++.++.+|...... ... ....+.-.-++.|| .++++.. .+.++.++. +|
T Consensus 99 ~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~-~~~-~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~-~g 171 (299)
T 2z2n_A 99 SAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYE-LPN-KGSYPSFITLGSDN--ALWFTENQNNAIGRITE-SG 171 (299)
T ss_dssp CCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEE-CSS-TTCCEEEEEECTTS--CEEEEETTTTEEEEECT-TC
T ss_pred CCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEec-CCC-CCCCCceEEEcCCC--CEEEEeCCCCEEEEEcC-CC
Confidence 1233333456664 666653 56788888766543211 111 11122333355666 4777664 578999987 67
Q ss_pred CeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCcc
Q 003012 590 SKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLD 668 (857)
Q Consensus 590 ~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~D 668 (857)
+... +... .... .+.-.-++ .+|. +++++. .+.+++++. ++....+..... ...+...-++.+|.
T Consensus 172 ~~~~-~~~~--~~~~-~~~~i~~~----~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~i~~~~~g~-- 237 (299)
T 2z2n_A 172 DITE-FKIP--TPAS-GPVGITKG----NDDA--LWFVEIIGNKIGRITT-SGEITEFKIPTP-NARPHAITAGAGID-- 237 (299)
T ss_dssp CEEE-EECS--STTC-CEEEEEEC----TTSS--EEEEETTTTEEEEECT-TCCEEEEECSST-TCCEEEEEECSTTC--
T ss_pred cEEE-eeCC--CCCC-cceeEEEC----CCCC--EEEEccCCceEEEECC-CCcEEEEECCCC-CCCceeEEECCCCC--
Confidence 6542 1111 1111 12222233 1333 666654 578888887 444433323211 12233334677776
Q ss_pred EEEEe-cCCcEEEEeC
Q 003012 669 LIVTT-MNGNVFCFST 683 (857)
Q Consensus 669 Lvv~t-~~G~V~~~~~ 683 (857)
|++++ .++.|+.|+.
T Consensus 238 l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 238 LWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEEETTTTEEEEEET
T ss_pred EEEeccCCceEEEECC
Confidence 78876 5678998886
No 183
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=85.15 E-value=43 Score=35.62 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEE-EeCCCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYV-LDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv-~~~dG~~~~~~~~~~g~i~ 511 (857)
+.|..||..+++........ ..+.-+++..||.. ++.++ ++.+.+ ...+|......... + -.
T Consensus 157 ~~i~iwd~~~~~~~~~~~~~-------------~~V~~v~fspdg~~-l~s~s-~~~~~~~~~~~~~~~~~~~~~-~-~~ 219 (365)
T 4h5i_A 157 AIMRIIDPSDLTEKFEIETR-------------GEVKDLHFSTDGKV-VAYIT-GSSLEVISTVTGSCIARKTDF-D-KN 219 (365)
T ss_dssp CEEEEEETTTTEEEEEEECS-------------SCCCEEEECTTSSE-EEEEC-SSCEEEEETTTCCEEEEECCC-C-TT
T ss_pred CEEEEeECCCCcEEEEeCCC-------------CceEEEEEccCCce-EEecc-ceeEEEEEeccCcceeeeecC-C-CC
Confidence 66889999998877654321 12334567788863 33334 444444 44566654322221 1 11
Q ss_pred ceeEEEeecCCCCeEEEEEeCCC---cEEEEecC-CCeeEE-EccccccccCCEEEecCCCCcccEEEEecCCcEEEEEC
Q 003012 512 GAVVAADINDDGKIELVTTDTHG---NVAAWTAE-GKGIWE-QHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSG 586 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G---~l~~~~~~-G~~~W~-~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~ 586 (857)
..+....+..||..-+......+ .+..|+.. +..... ..........+...++..||.. |+.++.++.|.+|+.
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~-lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL-AVLASNDNSIALVKL 298 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE-EEEEETTSCEEEEET
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc-eEEEcCCCEEEEEEC
Confidence 22334445556654333332222 23444432 221111 0111112234556778888864 667778999999999
Q ss_pred CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC
Q 003012 587 KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT 640 (857)
Q Consensus 587 ~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~ 640 (857)
.+|+.+..+.... ..++.-..|.. || .-|+.++.|+.+.+++-..
T Consensus 299 ~~~~~~~~~~~gH----~~~V~~v~fSp----dg-~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KDLSMSKIFKQAH----SFAITEVTISP----DS-TYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTTEEEEEETTSS----SSCEEEEEECT----TS-CEEEEEETTSEEEEEECCT
T ss_pred CCCcEEEEecCcc----cCCEEEEEECC----CC-CEEEEEeCCCeEEEEEcCC
Confidence 8888764332111 23445555653 23 3578888999888877543
No 184
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=85.09 E-value=34 Score=34.39 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=107.9
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeecccee
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQ 511 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ 511 (857)
.+.|..|+..+++......... ........ ++. -++.+..++.+.++............. + ..
T Consensus 88 Dg~v~iw~~~~~~~~~~~~~h~------------~~~~~~~~--~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 150 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLRNMTSHS------------ARVGSLSW--NSY-ILSSGSRSGHIHHHDVRVAEHHVATLS-G-HS 150 (318)
T ss_dssp TSEEEEEETTTTEEEEEEECCS------------SCEEEEEE--ETT-EEEEEETTSEEEEEETTSSSCEEEEEE-C-CS
T ss_pred CCcEEEeecCCceeEEEecCcc------------ceEEEeec--CCC-EEEEEecCCceEeeecCCCceeEEEEc-C-cc
Confidence 3679999999988766543210 01112222 222 345556667666665322211111111 1 12
Q ss_pred ceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccc-cccccCCEEEecCCCCcccEEEE--ecCCcEEEEECC
Q 003012 512 GAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLK-SLVTQGPSIGDVDGDGHSDVVVP--TLSGNIYVLSGK 587 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~-~~~~~~vavgDlDGDG~~DLvv~--t~~G~I~~l~~~ 587 (857)
..+....+..+|. -++.+..++.+.+|+. +|+........ ......+....+..++..-+.++ ...+.+.+|+..
T Consensus 151 ~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~ 229 (318)
T 4ggc_A 151 QEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 229 (318)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETT
T ss_pred CceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecc
Confidence 2344455566665 4667778899999976 44332211100 01111222222222222223222 345678888876
Q ss_pred CCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEE--ecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCC
Q 003012 588 DGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT--SFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGD 665 (857)
Q Consensus 588 ~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~--s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG 665 (857)
.+........ . ..+...-+.. ++. .++++ ..++.+++++..++.....-.+. ...+....+..||
T Consensus 230 ~~~~~~~~~~--~----~~v~~~~~~~----~~~-~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH--~~~V~~l~~spdg 296 (318)
T 4ggc_A 230 SGACLSAVDA--H----SQVCSILWSP----HYK-ELISGHGFAQNQLVIWKYPTMAKVAELKGH--TSRVLSLTMSPDG 296 (318)
T ss_dssp TCCEEEEEEC--S----SCEEEEEEET----TTT-EEEEEECTTTCCEEEEETTTCCEEEEECCC--SSCEEEEEECTTS
T ss_pred cccccccccc--e----eeeeeeeecc----ccc-ceEEEEEcCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCC
Confidence 5554322111 1 1122222221 222 33333 36788998887766443321221 1234444577888
Q ss_pred CccEEEEecCCcEEEEeC
Q 003012 666 DLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 666 ~~DLvv~t~~G~V~~~~~ 683 (857)
.. |+.++.+|.|.+|+.
T Consensus 297 ~~-l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 297 AT-VASAAADETLRLWRC 313 (318)
T ss_dssp SC-EEEEETTTEEEEECC
T ss_pred CE-EEEEecCCeEEEEEC
Confidence 74 777889999999985
No 185
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=85.07 E-value=43 Score=35.60 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=104.0
Q ss_pred EEEecCCCCCccEEEEe-eCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEe-cCCCe
Q 003012 469 TVVDLDGDGNLDILVGT-SFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWT-AEGKG 545 (857)
Q Consensus 469 avaDlDGDG~~DIvVg~-~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~-~~G~~ 545 (857)
.++-|..||..-++.++ .++.|.+++ .+++.+..... ...+...+|..||.. |+.++ ++.+.+|. .+|..
T Consensus 137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~-----~~~V~~v~fspdg~~-l~s~s-~~~~~~~~~~~~~~ 209 (365)
T 4h5i_A 137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET-----RGEVKDLHFSTDGKV-VAYIT-GSSLEVISTVTGSC 209 (365)
T ss_dssp EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC-----SSCCCEEEECTTSSE-EEEEC-SSCEEEEETTTCCE
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC-----CCceEEEEEccCCce-EEecc-ceeEEEEEeccCcc
Confidence 34567889976544443 467888888 46665433321 122445567788864 33333 44555554 46665
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEecCC----cEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCC
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSG----NIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKG 621 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G----~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~ 621 (857)
........ ....+....+..||.. ++.++.++ .++.++...+...... ......-..++...++.. ||
T Consensus 210 ~~~~~~~~-~~~~v~~v~fspdg~~-l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~V~~~~~Sp----dg- 281 (365)
T 4h5i_A 210 IARKTDFD-KNWSLSKINFIADDTV-LIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRFKGITSMDVDM----KG- 281 (365)
T ss_dssp EEEECCCC-TTEEEEEEEEEETTEE-EEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSCSCEEEEEECT----TS-
T ss_pred eeeeecCC-CCCCEEEEEEcCCCCE-EEEEecCCcceeEEeecccccceeccee-eeeecCCCCCeEeEEECC----CC-
Confidence 43322111 1111222334445543 33333332 3444443322211000 000001123455566653 33
Q ss_pred eEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCCC
Q 003012 622 LTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPAP 686 (857)
Q Consensus 622 ~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~~ 686 (857)
.-|++++.++.+.+++..++.....-. ......+....|..||+. |+.++.++.|.+|+-...
T Consensus 282 ~~lasgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 282 ELAVLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTY-VASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCE-EEEEETTSEEEEEECCTT
T ss_pred CceEEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCE-EEEEeCCCeEEEEEcCCC
Confidence 357788899999999987764432211 111223445568889874 677789999999997543
No 186
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=84.91 E-value=67 Score=38.04 Aligned_cols=192 Identities=12% Similarity=0.052 Sum_probs=90.1
Q ss_pred ccEEEEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccc-ccccc
Q 003012 479 LDILVGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLK-SLVTQ 557 (857)
Q Consensus 479 ~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~-~~~~~ 557 (857)
..|.+++..+.|+.++........+..........+...-.|.+| .|.++...+.++.++.... .|..... .....
T Consensus 374 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~-~~~~~~~~~~~~~ 450 (781)
T 3v9f_A 374 GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG--NLWFGTYLGNISYYNTRLK-KFQIIELEKNELL 450 (781)
T ss_dssp SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS--CEEEEETTEEEEEECSSSC-EEEECCSTTTCCC
T ss_pred CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC--CEEEEeccCCEEEEcCCCC-cEEEeccCCCCCC
Confidence 358888877778888864332222211100011122222234455 4777876667888876432 2332211 11111
Q ss_pred CCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 558 GPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 558 ~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
.+...-.|.+| .|.+++. +.++.|+..+++................+...-.| ..-.|.+++..+-|++++
T Consensus 451 ~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d------~~g~lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 451 DVRVFYEDKNK--KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD------SEGRFWIGTFGGGVGIYT 521 (781)
T ss_dssp CEEEEEECTTS--EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC------TTCCEEEEESSSCEEEEC
T ss_pred eEEEEEECCCC--CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEc------CCCCEEEEEcCCCEEEEe
Confidence 22222234444 4777776 67999998766643211111001111122111122 122477888744578888
Q ss_pred CCCCceEEEEeCCc-ceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 638 GPTSCADVVDIGET-SYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 638 g~~g~~~~i~~g~~-~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
..++....+..... ....+...=.|.+|. |.+++..|-++.|+..
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lWi~T~~Glv~~~d~~ 567 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQ--MWLATGEGLVCFPSAR 567 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECTTSC--EEEEETTEEEEESCTT
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECCCCC--EEEEECCCceEEECCC
Confidence 76654444322111 111122211345554 7888875544777653
No 187
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=84.53 E-value=44 Score=35.25 Aligned_cols=212 Identities=11% Similarity=0.057 Sum_probs=109.6
Q ss_pred EEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceece
Q 003012 435 IVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGA 513 (857)
Q Consensus 435 v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss 513 (857)
+.+|+.++++........ ......+..++..-++++..++.|.+++ .+|+....+... ..
T Consensus 42 ~~iw~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~-----~~ 102 (355)
T 3vu4_A 42 FEIYNVHPVAHIMSQEMR--------------HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVD-----AP 102 (355)
T ss_dssp EEEEEETTEEEEEEEECS--------------CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECS-----SC
T ss_pred EEEEecCCcceeeeeecC--------------CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECC-----Cc
Confidence 556777766655544321 1223334444443334556667888888 577665443321 23
Q ss_pred eEEEeecCCCCeEEEEEeCCCcEEEEecC-C-CeeEEEccccccccCCEEEecCCCCcccEEE--EecCCcEEEEECCCC
Q 003012 514 VVAADINDDGKIELVTTDTHGNVAAWTAE-G-KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVV--PTLSGNIYVLSGKDG 589 (857)
Q Consensus 514 ~~vaD~DGDG~~DLvv~~~~G~l~~~~~~-G-~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv--~t~~G~I~~l~~~~G 589 (857)
+....++.++ ++++ .++.+.+|+.. + +....... .. .+..+.. .-+++ +..+|.|.+|+..++
T Consensus 103 v~~v~~~~~~---~~~~-~~~~i~i~d~~~~~~~~~~~~~----~~--~~~~~s~---~~la~~sg~~~g~v~iwd~~~~ 169 (355)
T 3vu4_A 103 VKDLFLSREF---IVVS-YGDVISVFKFGNPWKRITDDIR----FG--GVCEFSN---GLLVYSNEFNLGQIHITKLQSS 169 (355)
T ss_dssp EEEEEECSSE---EEEE-ETTEEEEEESSTTCCBSSCCEE----EE--EEEEEET---TEEEEEESSCTTCEEEEECCC-
T ss_pred eEEEEEcCCE---EEEE-EcCEEEEEECCCCceeeEEecc----CC--ceEEEEc---cEEEEeCCCcCcEEEEEECCCC
Confidence 4445555543 3333 46788899763 3 22221111 00 1111111 12334 356788999987765
Q ss_pred Ceeccc----------c-cccCCccccceEEEeccCCCCCCCCeEEEEEecCCe-EEEEcCCCCceEE-EEeCCcceeeE
Q 003012 590 SKVRPY----------P-YRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGY-LYLIDGPTSCADV-VDIGETSYSMV 656 (857)
Q Consensus 590 ~~~~~~----------~-~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~-ly~~dg~~g~~~~-i~~g~~~~s~~ 656 (857)
...... | ......-..++....++. || .-|+.++.++. +.+++-.++.... +..+. ....+
T Consensus 170 ~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~----~g-~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~-h~~~v 243 (355)
T 3vu4_A 170 GSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR----KS-DMVATCSQDGTIIRVFKTEDGVLVREFRRGL-DRADV 243 (355)
T ss_dssp -----------------CCEEECCCSSCEEEEEECT----TS-SEEEEEETTCSEEEEEETTTCCEEEEEECTT-CCSCE
T ss_pred CccccccccccccccCcccEEEEccCCceEEEEECC----CC-CEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-CCCcE
Confidence 411000 0 010111123455556653 22 35778889997 9999877654433 32221 11234
Q ss_pred EEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 657 LADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 657 ~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
....+..||.. |+.++.+|.|.+|+...
T Consensus 244 ~~~~~s~~~~~-l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 244 VDMKWSTDGSK-LAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EEEEECTTSCE-EEEEETTCEEEEEESSC
T ss_pred EEEEECCCCCE-EEEEECCCEEEEEEccC
Confidence 44457888864 77778999999999754
No 188
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=83.81 E-value=34 Score=34.61 Aligned_cols=145 Identities=9% Similarity=0.011 Sum_probs=78.0
Q ss_pred EEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEE-ecCCcEEEEECCCCCeecccccccCCccc
Q 003012 527 LVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVP-TLSGNIYVLSGKDGSKVRPYPYRTHGRVM 604 (857)
Q Consensus 527 Lvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~-t~~G~I~~l~~~~G~~~~~~~~~~~g~~~ 604 (857)
++++..++.+.+|+. +|+..+......... .+....++.||.. ++++ ..++.|+.|+..+|+.+..++....+...
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~-l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGP-TPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTTCTT-CCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcCCCCC-CccceEEcCCCCE-EEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 455566788999987 566655544332100 1223346667754 4444 44678999998888876544432111000
Q ss_pred cceEEEeccCCCCCCCCeEEEEEe------------cCCeEEEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCccEEE
Q 003012 605 NQVLLVDLTKRGEKSKGLTIVTTS------------FDGYLYLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIV 671 (857)
Q Consensus 605 s~~~v~DlDgDg~gDG~~DLvv~s------------~dG~ly~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv 671 (857)
..+.-.-++ .||. -+++++ .++.+++++..++.... +..+..... + -+..||+. |++
T Consensus 82 ~~~~~~~~s----~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~---~~s~dg~~-l~~ 151 (337)
T 1pby_B 82 KSLFGAALS----PDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITM-L---AWARDGSK-LYG 151 (337)
T ss_dssp ECTTCEEEC----TTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCC-E---EECTTSSC-EEE
T ss_pred ccccceEEC----CCCC-EEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcce-e---EECCCCCE-EEE
Confidence 011111232 1333 355554 46889999887664433 333322222 1 26777764 555
Q ss_pred EecCCcEEEEeCCC
Q 003012 672 TTMNGNVFCFSTPA 685 (857)
Q Consensus 672 ~t~~G~V~~~~~~~ 685 (857)
+ ++.+++|+..+
T Consensus 152 ~--~~~i~~~d~~~ 163 (337)
T 1pby_B 152 L--GRDLHVMDPEA 163 (337)
T ss_dssp E--SSSEEEEETTT
T ss_pred e--CCeEEEEECCC
Confidence 5 67899998743
No 189
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=82.66 E-value=46 Score=34.08 Aligned_cols=209 Identities=11% Similarity=0.044 Sum_probs=97.0
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|+.++.++++.... .. . ..+...-++.||. ++++. ...|+.++. +|+...-.....+...
T Consensus 35 ~~i~~~d~~~~~~~~~-~~--~-----------~~~~~i~~~~dG~--l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~ 97 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRV-TM--D-----------APVSSVALRQSGG--YVATI-GTKFCALNWKEQSAVVLATVDNDKKN 97 (297)
T ss_dssp TEEEEEETTTCCEEEE-EC--S-----------SCEEEEEEBTTSS--EEEEE-TTEEEEEETTTTEEEEEEECCTTCSS
T ss_pred CEEEEEECCCCcEEEE-eC--C-----------CceEEEEECCCCC--EEEEE-CCeEEEEECCCCcEEEEEecCCCCCC
Confidence 5688888887765211 11 0 1233334667886 77766 567899985 4554322111111111
Q ss_pred ceeEEEeecCCCCeEEEEEeC------------CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEe-cC
Q 003012 512 GAVVAADINDDGKIELVTTDT------------HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LS 578 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~------------~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~ 578 (857)
..+.-.-++.||+ +++++. .+.++.++.+|+..-.... .... .-.-++.||.. ++++. ..
T Consensus 98 ~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-~~~p---ngi~~spdg~~-lyv~~~~~ 170 (297)
T 3g4e_A 98 NRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-VDIS---NGLDWSLDHKI-FYYIDSLS 170 (297)
T ss_dssp EEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-ESBE---EEEEECTTSCE-EEEEEGGG
T ss_pred CCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-cccc---cceEEcCCCCE-EEEecCCC
Confidence 2233344577886 566542 2456666666543211110 0111 12234556653 44443 46
Q ss_pred CcEEEEEC--CCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCc-eEEEEeCCccee
Q 003012 579 GNIYVLSG--KDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSC-ADVVDIGETSYS 654 (857)
Q Consensus 579 G~I~~l~~--~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~-~~~i~~g~~~~s 654 (857)
+.|+.|+. .+|.....-.+.........+.-.-+| .+| .|+++.. .+.+++++..++. ...+........
T Consensus 171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d----~~G--~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID----AEG--KLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB----TTS--CEEEEEETTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC----CCC--CEEEEEcCCCEEEEEcCCCceEEEEEECCCCCce
Confidence 78888863 566542111111000000111111122 133 3666654 4578888877543 344554432222
Q ss_pred eEEEEeecCCCCccEEEEec
Q 003012 655 MVLADNVDGGDDLDLIVTTM 674 (857)
Q Consensus 655 ~~~a~DlDGDG~~DLvv~t~ 674 (857)
.++ |.|.....|+|++.
T Consensus 245 ~~~---f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCC---FGGKNYSEMYVTCA 261 (297)
T ss_dssp EEE---EESGGGCEEEEEEB
T ss_pred EEE---EeCCCCCEEEEEcC
Confidence 233 43322234666653
No 190
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=80.66 E-value=55 Score=33.68 Aligned_cols=210 Identities=12% Similarity=0.002 Sum_probs=100.3
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecC--CCCeEEEEEeCCCcEEEEecC-C
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADIND--DGKIELVTTDTHGNVAAWTAE-G 543 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DG--DG~~DLvv~~~~G~l~~~~~~-G 543 (857)
+..+.++.||. -|+.++.++.|.+++. +|+......+. + -...+....+.. +|. -|+.++.++.+.+|+.. |
T Consensus 16 V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~-g-H~~~V~~v~~~~~~~~~-~l~s~s~D~~v~iWd~~~~ 91 (316)
T 3bg1_A 16 IHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLR-G-HEGPVWQVAWAHPMYGN-ILASCSYDRKVIIWREENG 91 (316)
T ss_dssp EEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEE-C-CSSCEEEEEECCGGGSS-CEEEEETTSCEEEECCSSS
T ss_pred EEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEc-C-CCccEEEEEeCCCCCCC-EEEEEECCCEEEEEECCCC
Confidence 34455667775 3667777888888883 45422111221 1 112344444432 243 47777889999999863 3
Q ss_pred CeeEEEccccccccCCEEEecCCCCc-ccEEEEecCCcEEEEECCCCCeec-ccccccCCccccceEEEeccCCCC----
Q 003012 544 KGIWEQHLKSLVTQGPSIGDVDGDGH-SDVVVPTLSGNIYVLSGKDGSKVR-PYPYRTHGRVMNQVLLVDLTKRGE---- 617 (857)
Q Consensus 544 ~~~W~~~~~~~~~~~vavgDlDGDG~-~DLvv~t~~G~I~~l~~~~G~~~~-~~~~~~~g~~~s~~~v~DlDgDg~---- 617 (857)
...-..... .....+....+..|+. .-|+.++.++.+.+|+..++.... ........ ..+....+..+..
T Consensus 92 ~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 92 TWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT---IGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS---SCBCCCEECCCCCC---
T ss_pred cceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc---CCcceEEEccccCCccc
Confidence 211111111 1122333445555422 236667778999988865442110 00000000 0010111110000
Q ss_pred -----C---CCCeEEEEEecCCeEEEEcCCCC-ceEEEEeCCcceeeEEEEeecCCCC---ccEEEEecCCcEEEEeCCC
Q 003012 618 -----K---SKGLTIVTTSFDGYLYLIDGPTS-CADVVDIGETSYSMVLADNVDGGDD---LDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 618 -----g---DG~~DLvv~s~dG~ly~~dg~~g-~~~~i~~g~~~~s~~~a~DlDGDG~---~DLvv~t~~G~V~~~~~~~ 685 (857)
+ ....-|+.++.++.+.+++-..+ .......-......+....+..+|. .-|+.++.+|.|.+|+...
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 0 00134677778887666654322 1111111111112244445777663 2366778999999998643
No 191
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=80.43 E-value=55 Score=33.49 Aligned_cols=146 Identities=17% Similarity=0.156 Sum_probs=75.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee------------CCeEEEEeCCCcee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS------------FGLFYVLDHHGKIR 500 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~------------~G~Lyv~~~dG~~~ 500 (857)
..|+.++.++++......... ......+.-+-++.||. +++++. .+.||.++.+|+..
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~--------~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~ 142 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDN--------DKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVK 142 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCT--------TCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE
T ss_pred CeEEEEECCCCcEEEEEecCC--------CCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEE
Confidence 458889998887654332210 00111233344577776 677652 24688888777643
Q ss_pred eeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec---CCCeeEEEcccc--ccccCCEEEecCCCCcccEEEE
Q 003012 501 EKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA---EGKGIWEQHLKS--LVTQGPSIGDVDGDGHSDVVVP 575 (857)
Q Consensus 501 ~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~---~G~~~W~~~~~~--~~~~~vavgDlDGDG~~DLvv~ 575 (857)
.... . ...+.-.-++.||+.=+++....+.+++|+. +|...-...... .....+.-.-+|.||. |+++
T Consensus 143 ~~~~----~-~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~--lwva 215 (297)
T 3g4e_A 143 KYFD----Q-VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK--LWVA 215 (297)
T ss_dssp EEEE----E-ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC--EEEE
T ss_pred EEee----c-cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC--EEEE
Confidence 2111 1 1122333456677654444445677888863 454321111100 0011122223566673 7777
Q ss_pred ec-CCcEEEEECCCCCeeccc
Q 003012 576 TL-SGNIYVLSGKDGSKVRPY 595 (857)
Q Consensus 576 t~-~G~I~~l~~~~G~~~~~~ 595 (857)
.. .+.|+.|+..+|+.+...
T Consensus 216 ~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 216 CYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp EETTTEEEEECTTTCCEEEEE
T ss_pred EcCCCEEEEEcCCCceEEEEE
Confidence 65 456999998778876443
No 192
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=79.79 E-value=56 Score=33.22 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=60.1
Q ss_pred EEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccc---c
Q 003012 481 ILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSL---V 555 (857)
Q Consensus 481 IvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~---~ 555 (857)
++.+..++.|++++ .+|+....++.. .. ..+...-+..||+.=++....++.+++|+. +|+..+....... .
T Consensus 14 ~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~ 90 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVASDTVYKSCVMP--DK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV 90 (349)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECS--SC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred EEEeCCCCeEEEEECCCCcEEEEEecC--CC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence 34445678899999 467666555443 10 012333456788644445556788999986 5666655443211 0
Q ss_pred ccCCEEEecCCCCcccEEEEec------------CCcEEEEECCCCCe
Q 003012 556 TQGPSIGDVDGDGHSDVVVPTL------------SGNIYVLSGKDGSK 591 (857)
Q Consensus 556 ~~~vavgDlDGDG~~DLvv~t~------------~G~I~~l~~~~G~~ 591 (857)
...+....++.||.. |+++.. .+.++.|+..+|+.
T Consensus 91 ~~~~~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 91 GRSMYSFAISPDGKE-VYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp EECSSCEEECTTSSE-EEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred cccccceEECCCCCE-EEEEcccccccccccccCCCeEEEEECCCccc
Confidence 111222345667753 555553 37889988766543
No 193
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=78.80 E-value=65 Score=33.39 Aligned_cols=116 Identities=6% Similarity=-0.036 Sum_probs=67.5
Q ss_pred cEEEecCC--CCCccEEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CC
Q 003012 468 PTVVDLDG--DGNLDILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EG 543 (857)
Q Consensus 468 pavaDlDG--DG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G 543 (857)
+....+.. +|. -++.++.+|.+.+++ .+++........ ....+....+..||.. |+.++.++.+.+|+. ++
T Consensus 128 v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~~pdg~~-lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 128 IIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAK---SDVEYSSGVLHKDSLL-LALYSPDGILDVYNLSSP 202 (343)
T ss_dssp EEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCC---SSCCCCEEEECTTSCE-EEEECTTSCEEEEESSCT
T ss_pred EEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecC---CCCceEEEEECCCCCE-EEEEcCCCEEEEEECCCC
Confidence 44455666 654 355577788999998 456543222111 1223455667778753 566688899999986 55
Q ss_pred Cee-EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCee
Q 003012 544 KGI-WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKV 592 (857)
Q Consensus 544 ~~~-W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~ 592 (857)
... ..... .....+....+..||.. |+.++ ++.|.+|+-.+++..
T Consensus 203 ~~~~~~~~~--~h~~~v~~l~fs~~g~~-l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 203 DQASSRFPV--DEEAKIKEVKFADNGYW-MVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp TSCCEECCC--CTTSCEEEEEECTTSSE-EEEEE-SSBEEEEETTSSTTC
T ss_pred CCCccEEec--cCCCCEEEEEEeCCCCE-EEEEe-CCeEEEEEcCCCCcc
Confidence 443 22221 12234455667777753 44444 669999998766543
No 194
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=78.02 E-value=1e+02 Score=35.37 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=27.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH 495 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~ 495 (857)
+.++.+|..+++..-..... . ....+ .+..||+. |++ ..++.|++++.
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~---------~-~~~~~---~~SpdG~~-la~-~~~~~i~v~~~ 148 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTN---------E-ETASL---DFSPVGDR-VAY-VRNHNLYIARG 148 (706)
T ss_dssp TEEEEEETTTTEEEEEECCT---------T-CCTTC---EECTTSSE-EEE-EETTEEEEEEC
T ss_pred CEEEEEECCCCceEEccCCc---------c-cccCC---cCCCCCCE-EEE-EECCeEEEEec
Confidence 66888999888764322110 0 11222 34567764 333 46788999884
No 195
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=77.83 E-value=66 Score=32.94 Aligned_cols=187 Identities=13% Similarity=0.041 Sum_probs=86.2
Q ss_pred EEecCCCCCccEEEEeeC-CeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeC----------------
Q 003012 470 VVDLDGDGNLDILVGTSF-GLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDT---------------- 532 (857)
Q Consensus 470 vaDlDGDG~~DIvVg~~~-G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~---------------- 532 (857)
-.-++.||. ++++... +.|+.++.+|+...-.....+.....+.-.-++.||. |++.+.
T Consensus 90 gl~~d~dG~--l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~ 165 (305)
T 3dr2_A 90 GNAVDAQQR--LVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPE 165 (305)
T ss_dssp EEEECTTSC--EEEEETTTTEEEEECTTSCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCS
T ss_pred eeeECCCCC--EEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccc
Confidence 334667775 6777654 5799999777754221111111111222233456775 666321
Q ss_pred --CCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecC------CcEEEEECCCCCeecccccc-cCCc
Q 003012 533 --HGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLS------GNIYVLSGKDGSKVRPYPYR-THGR 602 (857)
Q Consensus 533 --~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~------G~I~~l~~~~G~~~~~~~~~-~~g~ 602 (857)
.+.++.++. +|+..-.... . .+.-..++.||.. |+++... +.|+.|....+.......+. ....
T Consensus 166 ~~~~~v~~~d~~~g~~~~~~~~--~---~p~gl~~spdg~~-lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~ 239 (305)
T 3dr2_A 166 LAHHSVYRLPPDGSPLQRMADL--D---HPNGLAFSPDEQT-LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDG 239 (305)
T ss_dssp SSCEEEEEECSSSCCCEEEEEE--S---SEEEEEECTTSSE-EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSS
T ss_pred cCCCeEEEEcCCCCcEEEEecC--C---CCcceEEcCCCCE-EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCC
Confidence 245677766 4543221111 1 1122335666653 5555443 57777765433211000000 0011
Q ss_pred cccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEe
Q 003012 603 VMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 603 ~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~ 682 (857)
.... ...|- +|. |++++.+ -+++++..+.....+..... ...+.+ ..||+ .|++++. +.+|.+.
T Consensus 240 ~pdg-i~~d~------~G~--lwv~~~~-gv~~~~~~g~~~~~~~~~~~-~~~~~f---~~d~~-~L~it~~-~~l~~~~ 303 (305)
T 3dr2_A 240 LPDG-FCVDR------GGW--LWSSSGT-GVCVFDSDGQLLGHIPTPGT-ASNCTF---DQAQQ-RLFITGG-PCLWMLP 303 (305)
T ss_dssp CCCS-EEECT------TSC--EEECCSS-EEEEECTTSCEEEEEECSSC-CCEEEE---CTTSC-EEEEEET-TEEEEEE
T ss_pred CCCe-EEECC------CCC--EEEecCC-cEEEECCCCCEEEEEECCCc-eeEEEE---eCCCC-EEEEEcC-CeEEEEE
Confidence 1111 12222 333 6676644 48888876555555555442 222332 23433 3666654 5677665
No 196
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=77.08 E-value=73 Score=33.06 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=56.6
Q ss_pred eEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCC--eeEEEcccc------ccccC
Q 003012 489 LFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDT-HGNVAAWTAEGK--GIWEQHLKS------LVTQG 558 (857)
Q Consensus 489 ~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~--~~W~~~~~~------~~~~~ 558 (857)
.|++++. +|+....+.. .....+...-++.||. |++++. ++.++.|+.+|. ......... .....
T Consensus 70 ~i~~~d~~~g~~~~~~~~---~~~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~ 144 (329)
T 3fvz_A 70 TILVIDPNNAEILQSSGK---NLFYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ 144 (329)
T ss_dssp CEEEECTTTCCEEEEECT---TTCSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS
T ss_pred cEEEEECCCCeEEeccCC---CccCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC
Confidence 5888886 5876533221 1122344455677886 667654 577899998887 344332110 01112
Q ss_pred CEEEecCC-CCcccEEEEec--CCcEEEEECCCCCeeccc
Q 003012 559 PSIGDVDG-DGHSDVVVPTL--SGNIYVLSGKDGSKVRPY 595 (857)
Q Consensus 559 vavgDlDG-DG~~DLvv~t~--~G~I~~l~~~~G~~~~~~ 595 (857)
+.-.-++. +| .|+++.. ++.|+.|+ .+|+.+..+
T Consensus 145 P~~ia~~~~~g--~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 145 PTDVAVEPSTG--AVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp EEEEEECTTTC--CEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CcEEEEeCCCC--eEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 33333454 44 4777773 67888888 568776544
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=75.37 E-value=1e+02 Score=33.92 Aligned_cols=51 Identities=14% Similarity=0.213 Sum_probs=34.5
Q ss_pred CeEEEEcCCCCceE-EEEeCCcceeeEEEEeecCCCCccEEEEec-CCcEEEEeCCC
Q 003012 631 GYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTM-NGNVFCFSTPA 685 (857)
Q Consensus 631 G~ly~~dg~~g~~~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~-~G~V~~~~~~~ 685 (857)
+.++++|.+++... .+.++...++ + -|+-||+.-|++++. ++.|.+++..+
T Consensus 311 ~~V~viD~~t~kv~~~i~vg~~~~~---l-avs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 311 RFVVVLDAKTGERLAKFEMGHEIDS---I-NVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEECE---E-EECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCeEEEEEECCCCcce---E-EECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 46888887776543 3555543333 1 267888888888765 78899999753
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=74.13 E-value=77 Score=31.87 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=105.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCC-CCccEEEEeeCCeEEEEeCCCceeee-eeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGD-GNLDILVGTSFGLFYVLDHHGKIREK-FPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGD-G~~DIvVg~~~G~Lyv~~~dG~~~~~-~~~~~g~i 510 (857)
+.|+.++..+++...... ... ......+.-.-++.| | .+++++....|+.++.+|+.... .....+..
T Consensus 46 ~~i~~~d~~~g~~~~~~~---~~~-----~~~~~~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~ 115 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICK---PEV-----NGYGGIPAGCQCDRDAN--QLFVADMRLGLLVVQTDGTFEEIAKKDSEGRR 115 (314)
T ss_dssp CEEEEECTTTCCEEEEEC---CEE-----TTEECCEEEEEECSSSS--EEEEEETTTEEEEEETTSCEEECCSBCTTSCB
T ss_pred CEEEEEeCCCCcEEEEEe---ccc-----CCCCCCCceEEEecCCC--cEEEEECCCCEEEEeCCCCEEEEEeccCCCcc
Confidence 568899988777532111 000 000122334445666 5 47777766689999866765422 21111111
Q ss_pred eceeEEEeecCCCCeEEEEEeCC----------------CcEEEEecCCCeeEEEccccccccCCEEEe-cCCCCcccEE
Q 003012 511 QGAVVAADINDDGKIELVTTDTH----------------GNVAAWTAEGKGIWEQHLKSLVTQGPSIGD-VDGDGHSDVV 573 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv~~~~----------------G~l~~~~~~G~~~W~~~~~~~~~~~vavgD-lDGDG~~DLv 573 (857)
...+...-++.||. +++++.. +.++.++.+|+........ .....+++.- .|.||. -++
T Consensus 116 ~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~-~~~~~i~~~~~~d~dg~-~l~ 191 (314)
T 1pjx_A 116 MQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF-QFPNGIAVRHMNDGRPY-QLI 191 (314)
T ss_dssp CBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE-SSEEEEEEEECTTSCEE-EEE
T ss_pred ccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCC-CCcceEEEecccCCCCC-EEE
Confidence 12233344567775 5555532 4677777665433211100 1111222210 114543 355
Q ss_pred EEe-cCCcEEEEECC-CCCeeccccc-ccCCccccceEEEeccCCCCCCCCeEEEEEe-cCCeEEEEcCCCC-ceEEEEe
Q 003012 574 VPT-LSGNIYVLSGK-DGSKVRPYPY-RTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS-FDGYLYLIDGPTS-CADVVDI 648 (857)
Q Consensus 574 v~t-~~G~I~~l~~~-~G~~~~~~~~-~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s-~dG~ly~~dg~~g-~~~~i~~ 648 (857)
++. .++.|+.|+.. +|+....... ...+.....+.-.-++. +| .+++++ .++.+++++..++ ....+..
T Consensus 192 v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~----~G--~l~v~~~~~~~i~~~d~~~g~~~~~~~~ 265 (314)
T 1pjx_A 192 VAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE----DN--NLLVANWGSSHIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp EEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT----TC--CEEEEEETTTEEEEECTTCBSCSEEEEC
T ss_pred EEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC----CC--CEEEEEcCCCEEEEEcCCCCcEeEEEeC
Confidence 554 46788888743 3442110000 01111001111112221 33 366665 4578888887633 3333433
Q ss_pred CCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 649 GETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 649 g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
.... +...-++.||.. |++++ .++.|+.|+...
T Consensus 266 ~~~~---~~~i~~~~dg~~-l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 266 PFEK---PSNLHFKPQTKT-IFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp SSSC---EEEEEECTTSSE-EEEEETTTTEEEEEECSS
T ss_pred CCCC---ceeEEECCCCCE-EEEEeCCCCeEEEEeCCC
Confidence 3211 222225667642 66665 456899888643
No 199
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=73.99 E-value=1.5e+02 Score=35.06 Aligned_cols=190 Identities=14% Similarity=0.098 Sum_probs=90.8
Q ss_pred ccEEEEeeCCeEEEEeCCCceeeeeee-------e---ccce-eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee-
Q 003012 479 LDILVGTSFGLFYVLDHHGKIREKFPL-------E---MAEI-QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI- 546 (857)
Q Consensus 479 ~DIvVg~~~G~Lyv~~~dG~~~~~~~~-------~---~g~i-~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~- 546 (857)
-.|.+++..+.|+.++........+.. . .... ...+...=.|.+| .|.++...+-+..++......
T Consensus 269 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~ 346 (781)
T 3v9f_A 269 NKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFN--NIWIGTWGGGINFISNAPPTFH 346 (781)
T ss_dssp SEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSC--CEEEEEBSSCEEEECSSCCSCE
T ss_pred CCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCC--CEEEEecCCeEEEeCCCCCcce
Confidence 358888875678888854432211111 0 0011 1122222234555 477888777788887643321
Q ss_pred -EEEc-----cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceE--EEeccCCCCC
Q 003012 547 -WEQH-----LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVL--LVDLTKRGEK 618 (857)
Q Consensus 547 -W~~~-----~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~--v~DlDgDg~g 618 (857)
+... ........+...=.|.+| .|.+++..+.++.++..++.... +.. ..+.....+. ..|-
T Consensus 347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~-~~~-~~~~~~~~v~~i~~d~------ 416 (781)
T 3v9f_A 347 TWSYSPTQMNESSLSNKVVSSVCDDGQG--KLWIGTDGGGINVFENGKRVAIY-NKE-NRELLSNSVLCSLKDS------ 416 (781)
T ss_dssp EEC----CCCSSCCSSSCEEEEEECTTS--CEEEEEBSSCEEEEETTEEEEEC-C------CCCSBEEEEEECT------
T ss_pred eeccCccccccCCCCCcceEEEEEcCCC--CEEEEeCCCcEEEEECCCCeEEE-ccC-CCCCCCcceEEEEECC------
Confidence 1110 011111222222234444 58888888889999976554322 111 0111111121 2222
Q ss_pred CCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 619 SKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 619 DG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
.-.|.+++..+-+++++..++....+.........+...-.|.+| .|.+++. +.+++|+..+
T Consensus 417 --~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 417 --EGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNK--KIWIGTH-AGVFVIDLAS 478 (781)
T ss_dssp --TSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTS--EEEEEET-TEEEEEESSS
T ss_pred --CCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCC--CEEEEEC-CceEEEeCCC
Confidence 224788887677888887766444332211111112222244555 4888887 5688887643
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=73.89 E-value=1.3e+02 Score=34.55 Aligned_cols=189 Identities=13% Similarity=0.166 Sum_probs=98.3
Q ss_pred EEEEe-eCCeEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec---CCCeeEEEcccccc
Q 003012 481 ILVGT-SFGLFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA---EGKGIWEQHLKSLV 555 (857)
Q Consensus 481 IvVg~-~~G~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~---~G~~~W~~~~~~~~ 555 (857)
++|.. .++.|.+++. +++.+...+.. . .+....+..||+. +++++.++.+.+|+. +++...+.... ..
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g--~---~p~~v~~SpDGr~-lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~ 241 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG--Y---AVHISRLSASGRY-LFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SE 241 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS--S---CEEEEEECTTSCE-EEEEETTSEEEEEETTSSSCCEEEEEECC-SE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC--C---CccceEECCCCCE-EEEEcCCCeEEEEECCCCCCcEeEEEecC-CC
Confidence 44443 4568999994 67766555432 2 2334557889986 666777889999987 55555443322 12
Q ss_pred ccCCEEEecCC-CCcccEEEEe-cCCcEEEEECCCCCeecccccccC---C-ccc-c--ceEEEeccCCCCCCCCeEEEE
Q 003012 556 TQGPSIGDVDG-DGHSDVVVPT-LSGNIYVLSGKDGSKVRPYPYRTH---G-RVM-N--QVLLVDLTKRGEKSKGLTIVT 626 (857)
Q Consensus 556 ~~~vavgDlDG-DG~~DLvv~t-~~G~I~~l~~~~G~~~~~~~~~~~---g-~~~-s--~~~v~DlDgDg~gDG~~DLvv 626 (857)
...+++..+.+ ||+. +++++ ..+.+.+++..+.+.+...+.... + .+. . ...+..- .++..-++.
T Consensus 242 P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s-----~~~~~~vv~ 315 (567)
T 1qks_A 242 ARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-----HYRPEFIVN 315 (567)
T ss_dssp EEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-----SSSSEEEEE
T ss_pred CceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc-----CCCCEEEEE
Confidence 22333332334 8875 44444 468899999888777654332210 0 000 0 0112211 122222333
Q ss_pred EecCCeEEEEcCCCCce-EEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 627 TSFDGYLYLIDGPTSCA-DVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 627 ~s~dG~ly~~dg~~g~~-~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
....|.+++++-..... ....+....+ +.-.-|+.||+.=++.....+.|.+++..
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i~~~~~--~~d~~~~pdgr~~~va~~~sn~V~ViD~~ 372 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEISAERF--LHDGGLDGSHRYFITAANARNKLVVIDTK 372 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEEECCSS--EEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred ecCCCeEEEEecCCCccceeeeeecccc--ccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence 34457777777554321 1111211111 22223778887534444456778887764
No 201
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=72.36 E-value=90 Score=31.89 Aligned_cols=57 Identities=9% Similarity=0.059 Sum_probs=31.6
Q ss_pred EEeeCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCC-CcEEEEecCCCee
Q 003012 483 VGTSFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTH-GNVAAWTAEGKGI 546 (857)
Q Consensus 483 Vg~~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~-G~l~~~~~~G~~~ 546 (857)
+...++.|+.++.+|+.. .+... .. .+...-++.||+ |+++... +.+..|+.+|+..
T Consensus 62 ~d~~~~~i~~~~~~g~~~-~~~~~-~~---~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~g~~~ 119 (305)
T 3dr2_A 62 SDLVGRRVLGWREDGTVD-VLLDA-TA---FTNGNAVDAQQR--LVHCEHGRRAITRSDADGQAH 119 (305)
T ss_dssp EETTTTEEEEEETTSCEE-EEEES-CS---CEEEEEECTTSC--EEEEETTTTEEEEECTTSCEE
T ss_pred EECCCCEEEEEeCCCCEE-EEeCC-CC---ccceeeECCCCC--EEEEECCCCEEEEECCCCCEE
Confidence 333456788887766532 22211 11 123333567786 6666544 5788888776643
No 202
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=71.55 E-value=79 Score=36.94 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=90.4
Q ss_pred eeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEccccc--cccCCEEEecCCCCcccEEEEecCCcEEEEECCCCC
Q 003012 513 AVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHLKSL--VTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGS 590 (857)
Q Consensus 513 s~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~~~~--~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~ 590 (857)
.+...-+..||.. |++++.+|.+.+|+..+ .+..-.... ...++...-+..||.. |++++.+|.|..|+..+|.
T Consensus 87 ~V~~vawSPdG~~-LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~-LAsgs~DGtVkIWd~~~~~ 162 (588)
T 2j04_A 87 YPRVCKPSPIDDW-MAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESS-IVVGNEDGELQFFSIRKNS 162 (588)
T ss_dssp CEEEEEECSSSSC-EEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSC-EEEEETTSEEEEEECCCCT
T ss_pred cEEEEEECCCCCE-EEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCE-EEEEcCCCEEEEEECCCCc
Confidence 4566667778854 66777889999998544 333211111 1223455556778764 8888889999999987775
Q ss_pred e-------ecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceE----EEEeCC-cceeeEEE
Q 003012 591 K-------VRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCAD----VVDIGE-TSYSMVLA 658 (857)
Q Consensus 591 ~-------~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~----~i~~g~-~~~s~~~a 658 (857)
. +..+.....+ -...+.-.++.. || +++++.++.+++++-.++... .+..+. .....++.
T Consensus 163 l~~~~~i~l~ti~~~~~g-h~~~V~sVawSP----dg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF 234 (588)
T 2j04_A 163 ENTPEFYFESSIRLSDAG-SKDWVTHIVWYE----DV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI 234 (588)
T ss_dssp TTCCCCEEEEEEECSCTT-CCCCEEEEEEET----TE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred cccccceeeeeeeccccc-ccccEEEEEEcC----Cc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence 3 1111111111 123455556653 45 888888998888887665421 121121 12222333
Q ss_pred EeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 659 DNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 659 ~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
. | ..++++.++.|.+|+..+
T Consensus 235 s-----g--~~LASa~~~tIkLWd~~~ 254 (588)
T 2j04_A 235 V-----D--YKVVLTCPGYVHKIDLKN 254 (588)
T ss_dssp E-----T--TEEEEECSSEEEEEETTT
T ss_pred E-----C--CEEEEEeCCeEEEEECCC
Confidence 2 2 355555579999999754
No 203
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=71.21 E-value=1.1e+02 Score=32.21 Aligned_cols=172 Identities=15% Similarity=0.072 Sum_probs=93.9
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CC-ceeeeeeeeccce
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HG-KIREKFPLEMAEI 510 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG-~~~~~~~~~~g~i 510 (857)
+.|..||..+++........ .......++.+ .++...++.+++++- ++ +.+..+..
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~-------------~~v~~v~~~~~----~~~~~~~~~i~i~d~~~~~~~~~~~~~----- 138 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVD-------------APVKDLFLSRE----FIVVSYGDVISVFKFGNPWKRITDDIR----- 138 (355)
T ss_dssp TEEEEEETTTTEEEEEEECS-------------SCEEEEEECSS----EEEEEETTEEEEEESSTTCCBSSCCEE-----
T ss_pred cEEEEEECCCCcEEEEEECC-------------CceEEEEEcCC----EEEEEEcCEEEEEECCCCceeeEEecc-----
Confidence 46889999888876544321 12334445543 233445778999884 44 33332222
Q ss_pred eceeEEEeecCCCCeEEEE--EeCCCcEEEEecCCCeeEE--------------EccccccccCCEEEecCCCCcccEEE
Q 003012 511 QGAVVAADINDDGKIELVT--TDTHGNVAAWTAEGKGIWE--------------QHLKSLVTQGPSIGDVDGDGHSDVVV 574 (857)
Q Consensus 511 ~ss~~vaD~DGDG~~DLvv--~~~~G~l~~~~~~G~~~W~--------------~~~~~~~~~~vavgDlDGDG~~DLvv 574 (857)
...+ ..+.. .-+++ +..+|.+.+|+......+. ...-......+....+..||.. |+.
T Consensus 139 ~~~~--~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s 212 (355)
T 3vu4_A 139 FGGV--CEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VAT 212 (355)
T ss_dssp EEEE--EEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE-EEE
T ss_pred CCce--EEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEE
Confidence 1111 11211 22333 4667889999864322110 0000112234555677778753 666
Q ss_pred EecCCc-EEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCC
Q 003012 575 PTLSGN-IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPT 640 (857)
Q Consensus 575 ~t~~G~-I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~ 640 (857)
++.++. +.+|+..+|+.+..+... ....++....+.. || .-|++++.++.+.+++-..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g---~h~~~v~~~~~s~----~~-~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRG---LDRADVVDMKWST----DG-SKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECT---TCCSCEEEEEECT----TS-CEEEEEETTCEEEEEESSC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcC---CCCCcEEEEEECC----CC-CEEEEEECCCEEEEEEccC
Confidence 777897 999999888876544311 1123455555653 22 3577888899888887543
No 204
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=70.71 E-value=1.7e+02 Score=34.50 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=94.7
Q ss_pred CCCCCccEEEEeeCCeEEEEeCCCceeeeeeeec---cce-eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCe-eEE
Q 003012 474 DGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEM---AEI-QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKG-IWE 548 (857)
Q Consensus 474 DGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~---g~i-~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~-~W~ 548 (857)
|.+| .|.+++.. .|+.++........+.... ... ...+...=.|.+| .|.++...+-+..++..... ..-
T Consensus 271 d~~g--~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~~~ 345 (795)
T 4a2l_A 271 DSQN--RLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFKNI 345 (795)
T ss_dssp CTTS--CEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSEEE
T ss_pred cCCC--CEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccceEE
Confidence 4444 58888876 5788875433222221110 111 1122222234555 47888877778888753322 111
Q ss_pred Eccc---cccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeeccccccc-C-C-cc-ccce--EEEeccCCCCCC
Q 003012 549 QHLK---SLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRT-H-G-RV-MNQV--LLVDLTKRGEKS 619 (857)
Q Consensus 549 ~~~~---~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~-~-g-~~-~s~~--~v~DlDgDg~gD 619 (857)
.... +.....+...=.|.+| .|.+++..+.++.++..++.... +.... . . .+ ...+ ...|-+
T Consensus 346 ~~~~~~~~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d~~------ 416 (795)
T 4a2l_A 346 RNIPYKNSLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVDEK------ 416 (795)
T ss_dssp CCCTTSSSCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCCEEE-ECCC------CCSCSCEEEEEEETT------
T ss_pred cCCCCCCCCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEcCC------
Confidence 1111 1111222222234444 48889888889999987666532 11110 0 0 01 1111 122221
Q ss_pred CCeE-EEEEecCCeEEEEcCCCCceEEEEeCCc--ceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 620 KGLT-IVTTSFDGYLYLIDGPTSCADVVDIGET--SYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 620 G~~D-Lvv~s~dG~ly~~dg~~g~~~~i~~g~~--~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
-. |.+++.++-+++++..++....+..... ....+...-.|.+| .|.+++. +.+++|+..
T Consensus 417 --g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 417 --KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG--NLWLGTL-SALVRFNPE 479 (795)
T ss_dssp --TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS--CEEEEES-SCEEEEETT
T ss_pred --CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC--CEEEEec-CceeEEeCC
Confidence 24 7888887778999877765544432111 11112222244555 4888887 558888764
No 205
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=69.72 E-value=1.7e+02 Score=34.08 Aligned_cols=191 Identities=11% Similarity=0.071 Sum_probs=106.5
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeeccce-eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCee
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEMAEI-QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGI 546 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~g~i-~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~ 546 (857)
+..+-+..||. -|++++.+|.+.+++..+ .+.... ....+ ..++...-+.-||+. |++++.+|.+.+|+..+...
T Consensus 88 V~~vawSPdG~-~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~-LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 88 PRVCKPSPIDD-WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESS-IVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp EEEEEECSSSS-CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSC-EEEEETTSEEEEEECCCCTT
T ss_pred EEEEEECCCCC-EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCE-EEEEcCCCEEEEEECCCCcc
Confidence 45566777885 477788889999998555 222222 21110 113455566778864 77778899999998755421
Q ss_pred --------EEE--ccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeec---ccccccCCccccceEEEecc
Q 003012 547 --------WEQ--HLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVR---PYPYRTHGRVMNQVLLVDLT 613 (857)
Q Consensus 547 --------W~~--~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~---~~~~~~~g~~~s~~~v~DlD 613 (857)
... ...+ ....+.-.++-.|| +++++.++.++.|+..++.... .+. .........+.+. +
T Consensus 164 ~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~svaFs--g 236 (588)
T 2j04_A 164 NTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKITDLKIV--D 236 (588)
T ss_dssp TCCCCEEEEEEECSCTT-CCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCCCEEEE--T
T ss_pred ccccceeeeeeeccccc-ccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEEEEEEE--C
Confidence 111 1111 22345555677788 8888889999999876555311 010 0111112223332 1
Q ss_pred CCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEee--cCCCCccEEEEecCCcEEEEe
Q 003012 614 KRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNV--DGGDDLDLIVTTMNGNVFCFS 682 (857)
Q Consensus 614 gDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~Dl--DGDG~~DLvv~t~~G~V~~~~ 682 (857)
.-|++++ ++.+.+++..++.......+.. +.+...-| ..|| .-|+++..+|. .+|.
T Consensus 237 --------~~LASa~-~~tIkLWd~~~~~~~~~~~gh~--~~V~~va~~~s~d~-~~La~a~edG~-klw~ 294 (588)
T 2j04_A 237 --------YKVVLTC-PGYVHKIDLKNYSISSLKTGSL--ENFHIIPLNHEKES-TILLMSNKTSY-KVLL 294 (588)
T ss_dssp --------TEEEEEC-SSEEEEEETTTTEEEEEECSCC--SCCCEEEETTCSSC-EEEEECSSCEE-EEEE
T ss_pred --------CEEEEEe-CCeEEEEECCCCeEEEEEcCCC--ceEEEEEeeeCCCC-CEEEEEcCCCC-EEEe
Confidence 2345554 6889999887776644444422 11111125 5666 34666677887 4444
No 206
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=67.70 E-value=1.2e+02 Score=31.48 Aligned_cols=132 Identities=13% Similarity=0.092 Sum_probs=64.7
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeC-CCceeeeeeeecccee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDH-HGKIREKFPLEMAEIQ 511 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~-dG~~~~~~~~~~g~i~ 511 (857)
+.|+.++.++++..-. .. . . .+...-++.||. +++++. ..|+.++. +|+...-.....+...
T Consensus 71 ~~i~~~d~~~~~~~~~-~~--~-------~----~v~~i~~~~dg~--l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~ 133 (326)
T 2ghs_A 71 RELHELHLASGRKTVH-AL--P-------F----MGSALAKISDSK--QLIASD-DGLFLRDTATGVLTLHAELESDLPG 133 (326)
T ss_dssp TEEEEEETTTTEEEEE-EC--S-------S----CEEEEEEEETTE--EEEEET-TEEEEEETTTCCEEEEECSSTTCTT
T ss_pred CEEEEEECCCCcEEEE-EC--C-------C----cceEEEEeCCCe--EEEEEC-CCEEEEECCCCcEEEEeeCCCCCCC
Confidence 5688999888765311 11 1 1 122222455664 666664 45888885 5654321111101111
Q ss_pred ceeEEEeecCCCCeEEEEEeC-------CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCCcEEE
Q 003012 512 GAVVAADINDDGKIELVTTDT-------HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYV 583 (857)
Q Consensus 512 ss~~vaD~DGDG~~DLvv~~~-------~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~ 583 (857)
..+...-++.||. +++++. .+.++.++ +|+...... .... +.-.-++.||.. ++++. ..+.|+.
T Consensus 134 ~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~-~~~~---~~~i~~s~dg~~-lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 134 NRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKVTKLFA-DISI---PNSICFSPDGTT-GYFVDTKVNRLMR 205 (326)
T ss_dssp EEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEEEEEEE-EESS---EEEEEECTTSCE-EEEEETTTCEEEE
T ss_pred CCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcEEEeeC-CCcc---cCCeEEcCCCCE-EEEEECCCCEEEE
Confidence 2344445677886 555543 25677777 554321111 0011 112234556643 44443 4578888
Q ss_pred EECC--CC
Q 003012 584 LSGK--DG 589 (857)
Q Consensus 584 l~~~--~G 589 (857)
|+.. +|
T Consensus 206 ~d~~~~~G 213 (326)
T 2ghs_A 206 VPLDARTG 213 (326)
T ss_dssp EEBCTTTC
T ss_pred EEcccccC
Confidence 8853 56
No 207
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=65.72 E-value=2.1e+02 Score=33.69 Aligned_cols=224 Identities=13% Similarity=0.137 Sum_probs=104.8
Q ss_pred eEEEEECCCCceEEEEeccCCCCccccccccccccEEEe--cCCCCCccEEEEeeCCeEEEEeCC-Cceeeeeeeec--c
Q 003012 434 AIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVD--LDGDGNLDILVGTSFGLFYVLDHH-GKIREKFPLEM--A 508 (857)
Q Consensus 434 ~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaD--lDGDG~~DIvVg~~~G~Lyv~~~d-G~~~~~~~~~~--g 508 (857)
+|+.++..+++........ .. ........+.. .|.+| .|.+++..+.|+.++.. +.+. .+.... .
T Consensus 283 Gl~~~~~~~~~~~~~~~~~--~~-----~~~l~~~~i~~i~~D~~g--~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~ 352 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNP--VE-----NGSLSQRSVRSIFMDSQG--GMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKN 352 (795)
T ss_dssp CEEEEETTTTEEEEECCCT--TS-----TTSCSSSCEEEEEECTTS--CEEEEESSSCEEEECGGGGSSE-EECCCTTSS
T ss_pred hhheEcCCCCeEEEEecCC--CC-----CCCCCCCcEEEEEEeCCc--CEEEEECCCCeEEeCCCcccce-EEcCCCCCC
Confidence 4788888777654332111 00 01111122222 23444 58888887778888753 3322 121110 1
Q ss_pred ce-eceeEEEeecCCCCeEEEEEeCCCcEEEEecCCCeeEEEcc-c------cccccCCEEEecCCCCccc-EEEEecCC
Q 003012 509 EI-QGAVVAADINDDGKIELVTTDTHGNVAAWTAEGKGIWEQHL-K------SLVTQGPSIGDVDGDGHSD-VVVPTLSG 579 (857)
Q Consensus 509 ~i-~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~G~~~W~~~~-~------~~~~~~vavgDlDGDG~~D-Lvv~t~~G 579 (857)
.. ...+...=.|.+| .|.++...+-+..|+..... |.... . +.....+...=.|.+| . |.+++..+
T Consensus 353 ~l~~~~V~~i~~d~~g--~lWiGt~~~Gl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~v~~i~~d~~g--~~lWigt~~~ 427 (795)
T 4a2l_A 353 SLSDNVVSCIVEDKDK--NLWIGTNDGGLNLYNPITQR-FTSYTLQEDESARGIGSNNIKAVYVDEKK--SLVYIGTHAG 427 (795)
T ss_dssp SCSCSSEEEEEECTTS--CEEEEESSSCEEEECTTTCC-EEEECCC------CCSCSCEEEEEEETTT--TEEEEEETTT
T ss_pred CCCCCeeEEEEECCCC--CEEEEECCCCeEEEcCCCCc-EEEEecCCCCcccCCCCccEEEEEEcCCC--CEEEEEeCcC
Confidence 11 1122222235555 57888877778888764322 22111 1 1111122111123333 5 78888878
Q ss_pred cEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCC--cce--ee
Q 003012 580 NIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGE--TSY--SM 655 (857)
Q Consensus 580 ~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~--~~~--s~ 655 (857)
.++.++..+|+... +...........+...-.+ ..-.|.+++..| |++++..++....+.... ... ..
T Consensus 428 Gl~~~d~~~~~~~~-~~~~~~~l~~~~v~~i~~d------~~g~lwigt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 428 GLSILHRNSGQVEN-FNQRNSQLVNENVYAILPD------GEGNLWLGTLSA-LVRFNPEQRSFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp EEEEEETTTCCEEE-ECTTTSCCSCSCEEEEEEC------SSSCEEEEESSC-EEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred ceeEEeCCCCcEEE-eecCCCCcCCCeeEEEEEC------CCCCEEEEecCc-eeEEeCCCCeEEEccccccccccCCce
Confidence 89999987776432 2211111001111111122 122477777754 777876665443322110 011 11
Q ss_pred EEEEeecCCCCccEEEEecCCcEEEEeC
Q 003012 656 VLADNVDGGDDLDLIVTTMNGNVFCFST 683 (857)
Q Consensus 656 ~~a~DlDGDG~~DLvv~t~~G~V~~~~~ 683 (857)
+...=.|.+|. |.+++. +.+++|+.
T Consensus 500 i~~i~~d~~g~--lWigt~-~Gl~~~~~ 524 (795)
T 4a2l_A 500 ITTLFRDSHKR--LWIGGE-EGLSVFKQ 524 (795)
T ss_dssp EEEEEECTTCC--EEEEES-SCEEEEEE
T ss_pred EEEEEECCCCC--EEEEeC-CceEEEeC
Confidence 22222455554 788877 55777765
No 208
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=65.45 E-value=1.1e+02 Score=30.20 Aligned_cols=190 Identities=13% Similarity=0.065 Sum_probs=96.9
Q ss_pred cEEEecCCCCCccEEEEee-CCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeC-CCcEEEEecCCCe
Q 003012 468 PTVVDLDGDGNLDILVGTS-FGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDT-HGNVAAWTAEGKG 545 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~-~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~~G~~ 545 (857)
|.-.-++.|| .++++.. .+.|+.++.+|+... +.... ....+...-++.|| .++++.. .+.++.++.+|+.
T Consensus 101 ~~~i~~~~~g--~l~v~~~~~~~i~~~d~~g~~~~-~~~~~--~~~~~~~i~~~~~g--~l~v~~~~~~~i~~~~~~g~~ 173 (299)
T 2z2n_A 101 PYGITEGPNG--DIWFTEMNGNRIGRITDDGKIRE-YELPN--KGSYPSFITLGSDN--ALWFTENQNNAIGRITESGDI 173 (299)
T ss_dssp EEEEEECTTS--CEEEEETTTTEEEEECTTCCEEE-EECSS--TTCCEEEEEECTTS--CEEEEETTTTEEEEECTTCCE
T ss_pred ceeeEECCCC--CEEEEecCCceEEEECCCCCEEE-ecCCC--CCCCCceEEEcCCC--CEEEEeCCCCEEEEEcCCCcE
Confidence 3333355666 4677654 568999988776542 22211 11223334456677 4666654 4678888876654
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEec-CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEE
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTI 624 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DL 624 (857)
... .... ....+.-.-++.||. +++++. .+.++.++. +|.... +... ... ..+.-.-++ .+|. +
T Consensus 174 ~~~-~~~~-~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~-~~~~--~~~-~~~~~i~~~----~~g~--l 238 (299)
T 2z2n_A 174 TEF-KIPT-PASGPVGITKGNDDA--LWFVEIIGNKIGRITT-SGEITE-FKIP--TPN-ARPHAITAG----AGID--L 238 (299)
T ss_dssp EEE-ECSS-TTCCEEEEEECTTSS--EEEEETTTTEEEEECT-TCCEEE-EECS--STT-CCEEEEEEC----STTC--E
T ss_pred EEe-eCCC-CCCcceeEEECCCCC--EEEEccCCceEEEECC-CCcEEE-EECC--CCC-CCceeEEEC----CCCC--E
Confidence 321 1111 112233334566665 777764 578999987 676432 2111 111 122222233 2333 7
Q ss_pred EEEe-cCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 625 VTTS-FDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 625 vv~s-~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
++++ .++.++.++.. +....+...... ..+...-+ .+|. |++++..+.++.|+..
T Consensus 239 ~v~~~~~~~i~~~d~~-g~~~~~~~~~~~-~~~~~i~~-~~g~--l~v~~~~~~l~~~~~~ 294 (299)
T 2z2n_A 239 WFTEWGANKIGRLTSN-NIIEEYPIQIKS-AEPHGICF-DGET--IWFAMECDKIGKLTLI 294 (299)
T ss_dssp EEEETTTTEEEEEETT-TEEEEEECSSSS-CCEEEEEE-CSSC--EEEEETTTEEEEEEEC
T ss_pred EEeccCCceEEEECCC-CceEEEeCCCCC-CccceEEe-cCCC--EEEEecCCcEEEEEcC
Confidence 7776 45788888864 333333222111 11222224 5554 7777767778877753
No 209
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=64.06 E-value=1.4e+02 Score=30.79 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=35.9
Q ss_pred cCCCCCccEEEEeeCCeEEEEeCCCceeeeeeeec---------c-------ceeceeEEEeecC-CCCeEEEEEeCCCc
Q 003012 473 LDGDGNLDILVGTSFGLFYVLDHHGKIREKFPLEM---------A-------EIQGAVVAADIND-DGKIELVTTDTHGN 535 (857)
Q Consensus 473 lDGDG~~DIvVg~~~G~Lyv~~~dG~~~~~~~~~~---------g-------~i~ss~~vaD~DG-DG~~DLvv~~~~G~ 535 (857)
++.+|. -+++...+++|+.++..+.....+.... + .....+...-++. +| .|++++....
T Consensus 26 ~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g--~l~v~d~~~~ 102 (322)
T 2fp8_A 26 FDSTNK-GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN--QLYIVDCYYH 102 (322)
T ss_dssp CCTTCS-SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT--EEEEEETTTE
T ss_pred EcCCCC-EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC--cEEEEECCCC
Confidence 344543 2556666788988886553222222100 0 0011233333554 55 5888876666
Q ss_pred EEEEecCC
Q 003012 536 VAAWTAEG 543 (857)
Q Consensus 536 l~~~~~~G 543 (857)
++.++.++
T Consensus 103 i~~~d~~~ 110 (322)
T 2fp8_A 103 LSVVGSEG 110 (322)
T ss_dssp EEEECTTC
T ss_pred EEEEeCCC
Confidence 88887654
No 210
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=58.90 E-value=1.4e+02 Score=33.75 Aligned_cols=148 Identities=14% Similarity=0.068 Sum_probs=78.2
Q ss_pred EEEEeCCCcEEEEecC-CCee---EEE-c----cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeeccccc
Q 003012 527 LVTTDTHGNVAAWTAE-GKGI---WEQ-H----LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPY 597 (857)
Q Consensus 527 Lvv~~~~G~l~~~~~~-G~~~---W~~-~----~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~ 597 (857)
|+.++.++.+.+|+.. +... ... . .-......+...++..++ -|+.++.+|.|.+|+..++.... ...
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~-~~~ 304 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPS-FYD 304 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCS-EEE
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCce-EEe
Confidence 6667788999999863 3211 100 0 000112334455665544 37888889999999987663211 001
Q ss_pred ccCCccccceEEE--eccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecC
Q 003012 598 RTHGRVMNQVLLV--DLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMN 675 (857)
Q Consensus 598 ~~~g~~~s~~~v~--DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~ 675 (857)
... ..++.-. -+. .+|..-|+.++.|+.+.+++..++.....-.+......+....+..||.. ++.++.+
T Consensus 305 ~~H---~~~V~sv~~~~s----~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~-l~s~~~d 376 (524)
T 2j04_B 305 QVH---DSYILSVSTAYS----DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYS-YIYSDGA 376 (524)
T ss_dssp ECS---SSCEEEEEEECC----TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTE-EEEECSS
T ss_pred ecc---cccEEEEEEEcC----CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCe-EEEeCCC
Confidence 111 1222222 233 23334578888999999888655322111011000000111236777765 7777788
Q ss_pred CcEEEEeCCC
Q 003012 676 GNVFCFSTPA 685 (857)
Q Consensus 676 G~V~~~~~~~ 685 (857)
+.|.+|+...
T Consensus 377 ~tv~lwd~~~ 386 (524)
T 2j04_B 377 SSLRAVPSRA 386 (524)
T ss_dssp SEEEEEETTC
T ss_pred CcEEEEECcc
Confidence 8999998754
No 211
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=57.88 E-value=1.7e+02 Score=30.06 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=76.0
Q ss_pred eEEEeecCCCCeEEEEEeCCCcEEEEecC--C-----C-eeEE---EccccccccCCEEEecCCCCcccEEEEe-cCCcE
Q 003012 514 VVAADINDDGKIELVTTDTHGNVAAWTAE--G-----K-GIWE---QHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNI 581 (857)
Q Consensus 514 ~~vaD~DGDG~~DLvv~~~~G~l~~~~~~--G-----~-~~W~---~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I 581 (857)
+....++.||+.=++.....+.+.+|+.+ + + .... ..........+.-.-+..||.. +++++ .++.+
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~-l~v~~~~~~~v 235 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF-AYLINEIGGTV 235 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE-EEEEETTTCEE
T ss_pred ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE-EEEEcCCCCeE
Confidence 34566788887644444446778888643 2 1 1111 1111111223444557778863 55555 47788
Q ss_pred EEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecC--CeEEE--EcCCCCceEEEE-eCCcceeeE
Q 003012 582 YVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFD--GYLYL--IDGPTSCADVVD-IGETSYSMV 656 (857)
Q Consensus 582 ~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~d--G~ly~--~dg~~g~~~~i~-~g~~~~s~~ 656 (857)
.+|+..+|+............-...+.-.-+. .||.. |++++.. +.+.+ ++..++....+. +... ..+
T Consensus 236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s----pdg~~-l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g--~~~ 308 (361)
T 3scy_A 236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLS----PDGKY-LYASNRLKADGVAIFKVDETNGTLTKVGYQLTG--IHP 308 (361)
T ss_dssp EEEEEETTEEEEEEEEESCSSCCCCEEEEEEC----TTSSE-EEEEECSSSCEEEEEEECTTTCCEEEEEEEECS--SCC
T ss_pred EEEEecCCceEEeEEEecCCCCCCCcccEEEC----CCCCE-EEEECCCCCCEEEEEEEcCCCCcEEEeeEecCC--CCC
Confidence 88886666542211111111001112222343 24443 5555554 55555 443344433221 1111 112
Q ss_pred EEEeecCCCCccEEEEe-cCCcEEEEeC
Q 003012 657 LADNVDGGDDLDLIVTT-MNGNVFCFST 683 (857)
Q Consensus 657 ~a~DlDGDG~~DLvv~t-~~G~V~~~~~ 683 (857)
....|+.||+. |++++ .++.+.+|..
T Consensus 309 ~~~~~spdg~~-l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 309 RNFIITPNGKY-LLVACRDTNVIQIFER 335 (361)
T ss_dssp CEEEECTTSCE-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCCE-EEEEECCCCCEEEEEE
Confidence 22347788874 56665 5677777654
No 212
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=57.41 E-value=2.2e+02 Score=31.04 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=72.1
Q ss_pred EEEecCCCCCccEEEE-eeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCe-----------EEEEEeCCCc
Q 003012 469 TVVDLDGDGNLDILVG-TSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKI-----------ELVTTDTHGN 535 (857)
Q Consensus 469 avaDlDGDG~~DIvVg-~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~-----------DLvv~~~~G~ 535 (857)
++.-++||| ++++. +.++.|.+++ .+|+.+..+... ......+...-|..||.. +++.++.++.
T Consensus 185 ~fs~~~g~~--~~LaSgS~D~TIkIWDl~TGk~l~tL~g~-~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 185 TFAEVQGMQ--EALLGTTIMNNIVIWNLKTGQLLKKMHID-DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp EEEEEETST--TEEEEEETTSEEEEEETTTCCEEEEEECC-C---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred EeeccCCCC--ceEEEecCCCcEEEEECCCCcEEEEEcCC-CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 344444554 55665 6688899999 578866554321 111111222223334432 3444555566
Q ss_pred EEEEec-CCCeeEEEc--cccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccccceEEEec
Q 003012 536 VAAWTA-EGKGIWEQH--LKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDL 612 (857)
Q Consensus 536 l~~~~~-~G~~~W~~~--~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~Dl 612 (857)
+.+|+. +|...-... .+........-++++ |. -++.++.++.|.+|+-.+|+.+..+.-... .......+
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS~DgTIkIWDl~tGk~l~tL~gH~~----~vvs~vaf 334 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAILTSGTIAIWDLLLGQCTALLPPVSD----QHWSFVKW 334 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEETTSCEEEEETTTCSEEEEECCC------CCCCEEEE
T ss_pred EEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEcCCCcEEEEECCCCcEEEEecCCCC----CeEEEEEE
Confidence 777765 343322111 010000011112222 21 245556789999999999987644321111 11112344
Q ss_pred cCCCCCCCCeEEEEEecCCeEEEEc
Q 003012 613 TKRGEKSKGLTIVTTSFDGYLYLID 637 (857)
Q Consensus 613 DgDg~gDG~~DLvv~s~dG~ly~~d 637 (857)
.. || .-|+.++.|+.+++.+
T Consensus 335 SP----DG-~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 335 SG----TD-SHLLAGQKDGNIFVYH 354 (356)
T ss_dssp CS----SS-SEEEEECTTSCEEEEE
T ss_pred CC----CC-CEEEEEECCCcEEEec
Confidence 42 22 3477888888777654
No 213
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=56.71 E-value=82 Score=27.36 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=48.5
Q ss_pred CCCeeEEEEEEeecccCCCCCCCCeEEEEEEecCCccccceeeeeccccCCCceeeEecccCCcccceEEEEEEEcCCCc
Q 003012 725 EGRNFWVEIEIVDEYRFPSGSQAPYNVTTTLLVPGNYQGERRIKQSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGL 804 (857)
Q Consensus 725 dG~~~~v~~~i~D~~~~~~~~~~~y~v~v~~~~~g~~~g~r~~~~~~~~~~~g~~~~~~~~~~~r~~~~v~v~~~~~~~~ 804 (857)
.|+..++.+-+.|....|. ...+ ++|+|..+.+-.-. .....-+..|.++.+++.|.....|.-+|++...++.
T Consensus 15 PGetV~~~~~~~~~~~~p~-~~~~--~~v~l~dp~g~~v~---~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~~~~~~ 88 (102)
T 2p9r_A 15 PGQTVKFRVVSMDENFHPL-NELI--PLVYIQDPKGNRIA---QWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGG 88 (102)
T ss_dssp TTCEEEEEEEEECGGGCBC-CCEE--EEEEEECTTSCEEE---EEEEEECBTTEEEEEEECCSSCCCEEEEEEEECTTSC
T ss_pred CCCEEEEEEEEECCCCcCC-CCCc--eEEEEECCCCCEEE---EEEeecCCCCEEEEEEECCCCCCCeeEEEEEEECCCC
Confidence 3777777777676644443 2222 34444444332211 1123345679999999999999999999999877666
Q ss_pred eEEEe
Q 003012 805 YFSDE 809 (857)
Q Consensus 805 ~~~d~ 809 (857)
.++-+
T Consensus 89 ~~~~~ 93 (102)
T 2p9r_A 89 RTEHP 93 (102)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 43333
No 214
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=55.62 E-value=1.8e+02 Score=29.50 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=90.4
Q ss_pred cCCCCCccEEEE-eeCCeEEEEeCC-CceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCC-----CcEEEEecCCCe
Q 003012 473 LDGDGNLDILVG-TSFGLFYVLDHH-GKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTH-----GNVAAWTAEGKG 545 (857)
Q Consensus 473 lDGDG~~DIvVg-~~~G~Lyv~~~d-G~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~-----G~l~~~~~~G~~ 545 (857)
++.||. |++. ..++.|++++.+ |+.. .+..... ..+...-++.||. ++++... +.++.|+.++..
T Consensus 52 ~~~~g~--l~~~~~~~~~i~~~d~~~~~~~-~~~~~~~---~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~ 123 (333)
T 2dg1_A 52 FDRQGQ--LFLLDVFEGNIFKINPETKEIK-RPFVSHK---ANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDN 123 (333)
T ss_dssp ECTTSC--EEEEETTTCEEEEECTTTCCEE-EEEECSS---SSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCS
T ss_pred ECCCCC--EEEEECCCCEEEEEeCCCCcEE-EEeeCCC---CCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCE
Confidence 456775 6654 456789999864 4433 2211111 2244444567774 5666543 378888875543
Q ss_pred eEEEccccccccCCEEEecCCCCcccEEEEec-------CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 546 IWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-------SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 546 ~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-------~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
.-...........+.-.-++.||. +++++. .+.++.++..+++.... .. . .. .+.-.-++ .
T Consensus 124 ~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~--~~-~~~~i~~~----~ 191 (333)
T 2dg1_A 124 LQDIIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQ--N--IS-VANGIALS----T 191 (333)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEE-EE--E--ES-SEEEEEEC----T
T ss_pred EEEEEccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEEEe-ec--C--CC-cccceEEC----C
Confidence 321111011112233344566663 677665 35788887654443211 00 0 00 11112233 2
Q ss_pred CCCeEEEEE-ecCCeEEEEcCC--CCceEEE----EeCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCC
Q 003012 619 SKGLTIVTT-SFDGYLYLIDGP--TSCADVV----DIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTP 684 (857)
Q Consensus 619 DG~~DLvv~-s~dG~ly~~dg~--~g~~~~i----~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~ 684 (857)
||.. |+++ ..++.+++++-. +.....+ .........+...-++.||. |++++ .++.|++|+..
T Consensus 192 dg~~-l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 192 DEKV-LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN--LYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp TSSE-EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC--EEEEEETTTEEEEECTT
T ss_pred CCCE-EEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC--EEEEEcCCCEEEEECCC
Confidence 3332 4444 446777777653 2222111 00000111233334677775 77775 45789988763
No 215
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=53.69 E-value=2.9e+02 Score=31.26 Aligned_cols=226 Identities=14% Similarity=0.050 Sum_probs=115.2
Q ss_pred ceEEEEEC--CCCceEEEEeccCCCCccccccccccccEEEecCC----CCCccEEEEe-eCCeEEEEe-CCCceeeeee
Q 003012 433 GAIVVFNL--DTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDG----DGNLDILVGT-SFGLFYVLD-HHGKIREKFP 504 (857)
Q Consensus 433 G~v~a~d~--~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDG----DG~~DIvVg~-~~G~Lyv~~-~dG~~~~~~~ 504 (857)
+.|.+||. .+++..-.... ...|.-..++. ||+. +++++ .++.|.+++ .+++.+...+
T Consensus 200 ~~V~v~D~~~~t~~~~~~i~~-------------g~~p~~va~sp~~~~dg~~-l~v~~~~~~~v~v~D~~t~~~~~~i~ 265 (543)
T 1nir_A 200 ARIDMIDLWAKEPTKVAEIKI-------------GIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVS 265 (543)
T ss_dssp SEEEEEETTSSSCEEEEEEEC-------------CSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEECcCCCCcEEEEEec-------------CCCcceEEeCCCcCCCCCE-EEEEEccCCeEEEEeccccccceeec
Confidence 66889998 77776543321 12244555777 8875 55555 478898998 4677665444
Q ss_pred eecc-----ce--eceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEe
Q 003012 505 LEMA-----EI--QGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT 576 (857)
Q Consensus 505 ~~~g-----~i--~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t 576 (857)
.... .. ...+...-+..||..=++.....+.+.+|+. +++......+. ....+.-.-|+.||+.=++...
T Consensus 266 ~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 266 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEG
T ss_pred ccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec--cCcCccCceECCCCCEEEEEec
Confidence 3210 00 0123344455666654555555678888875 33332211111 1122222346777764333344
Q ss_pred cCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEe--cCCeEEEEcCCC-------C-ceEEE
Q 003012 577 LSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS--FDGYLYLIDGPT-------S-CADVV 646 (857)
Q Consensus 577 ~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s--~dG~ly~~dg~~-------g-~~~~i 646 (857)
.++.|.+++..+|+.+...+.....-......+.+- ++.. +++.+ .++.+.+++..+ . +...+
T Consensus 344 ~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p------~~g~-~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 344 NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHP------KYGP-VWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEET------TTEE-EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCC------CCcc-EEEeccCCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 578999999988987654432110000011222221 2223 44443 357777777554 1 22223
Q ss_pred EeCCcceeeEEEEeecCCCCccEEEEe-------cCCcEEEEeCCC
Q 003012 647 DIGETSYSMVLADNVDGGDDLDLIVTT-------MNGNVFCFSTPA 685 (857)
Q Consensus 647 ~~g~~~~s~~~a~DlDGDG~~DLvv~t-------~~G~V~~~~~~~ 685 (857)
...... . ...-+..||+. |++.+ .++.|.+|+..+
T Consensus 417 ~~~g~~-~--~~v~~~pdg~~-l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 417 QGQGGG-S--LFIKTHPKSSH-LYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp ECSCSC-C--CCEECCTTCCE-EEECCTTCSSHHHHTCEEEEETTC
T ss_pred EcCCCC-c--eEEEcCCCCCc-EEEecCCCCCcccCceEEEEECCC
Confidence 322111 1 11125666653 55554 256888888754
No 216
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A*
Probab=51.35 E-value=2.5e+02 Score=29.90 Aligned_cols=198 Identities=9% Similarity=-0.019 Sum_probs=100.4
Q ss_pred CCCCccEEEEeeCCeEEEEeCCCceeeee-ee----eccceeceeEEEeecCC--CCeEEEEEeCCCcEE--EEecCCCe
Q 003012 475 GDGNLDILVGTSFGLFYVLDHHGKIREKF-PL----EMAEIQGAVVAADINDD--GKIELVTTDTHGNVA--AWTAEGKG 545 (857)
Q Consensus 475 GDG~~DIvVg~~~G~Lyv~~~dG~~~~~~-~~----~~g~i~ss~~vaD~DGD--G~~DLvv~~~~G~l~--~~~~~G~~ 545 (857)
+.....|++-..++.|.-...++...|.. .. ......+.++++=+..+ ...+|+....++.+. +++. .
T Consensus 19 ~~~~i~Vy~q~~~n~i~e~~~~~~~~W~~~~~~~~~~~~~~~SplAAv~~~~~~~~~i~Vfy~~~dn~l~e~~~~~---~ 95 (312)
T 1ofz_A 19 GGRQQRVYFQDLNGKIREAQRGGDNPWTGGSSQNVIGEAKLFSPLAAVTWKSAQGIQIRVYCVNKDNILSEFVYDG---S 95 (312)
T ss_dssp TSCEEEEEEEBTTSEEEEEEEETTSCCEECSGGGEEEECSTTCCCEEEEEEETTEEEEEEEEECTTCBEEEEEEES---S
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCcccCcccccccccccCCCceEEEecCCCCCEEEEEEECCCCcEEEEEecC---C
Confidence 34556667666666554322221112421 11 10112344555544322 456777777777664 3343 3
Q ss_pred eEEEcc-cc-----ccccCCEEEecCCC----CcccEEEE---ecCCcEEEEECCCCCeecccccccCCccc-cceEEEe
Q 003012 546 IWEQHL-KS-----LVTQGPSIGDVDGD----GHSDVVVP---TLSGNIYVLSGKDGSKVRPYPYRTHGRVM-NQVLLVD 611 (857)
Q Consensus 546 ~W~~~~-~~-----~~~~~vavgDlDGD----G~~DLvv~---t~~G~I~~l~~~~G~~~~~~~~~~~g~~~-s~~~v~D 611 (857)
.|.... .. ...+.+++.=+.++ ...+|++- ..+..|+-..- +|. |.--....+... +++++.-
T Consensus 96 ~W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~~~dn~I~e~~~-~g~--W~~~~~lg~~~~gT~laa~s 172 (312)
T 1ofz_A 96 KWITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSNLSGSSIHEYVW-SGK--WTAGASFGSTAPGTGIGATA 172 (312)
T ss_dssp CEEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCCSTTEEEEEEEE-SSS--EEEEEEEEEESTTCCEEEEE
T ss_pred CccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEeccCCCCeEEEEEc-cCC--cccCCCcCCccCCCCcceee
Confidence 487532 22 12445555555543 35677776 55666644332 244 321111111111 3344444
Q ss_pred ccCCCCCCCCeEEEEEecCCeE--EEEcCCCCceEE-EEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCC
Q 003012 612 LTKRGEKSKGLTIVTTSFDGYL--YLIDGPTSCADV-VDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTP 684 (857)
Q Consensus 612 lDgDg~gDG~~DLvv~s~dG~l--y~~dg~~g~~~~-i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~ 684 (857)
+. .+.++|++...++.+ ++.++. ++... +.....+.+.+++..+++..+++|++.+.++.|+....+
T Consensus 173 ~~-----~~~i~vf~q~~dn~i~~~~~d~~-~W~~~~~~~~~~p~s~lAavs~~~~~~i~lf~~~~~n~i~~~~~~ 242 (312)
T 1ofz_A 173 IG-----PGRLRIYYQATDNKIREHCWDSN-SWYVGGFSASASAGVSIAAISWGSTPNIRVYWQKGREELYEAAYG 242 (312)
T ss_dssp EE-----TTEEEEEEEBTTSEEEEEEESSS-CEEEEEEEEECCTTCEEEEEEETTTTEEEEEEECTTSCEEEEEES
T ss_pred cC-----CCCEEEEEEcCCCcEEEEEecCC-cceECCEecCcCCCCCcEEEEeCCCCEEEEEEECCCCcEEEEEec
Confidence 42 357999998888866 467763 32221 222223344566666744339999999888888765543
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=51.03 E-value=2.7e+02 Score=30.15 Aligned_cols=197 Identities=9% Similarity=-0.018 Sum_probs=95.3
Q ss_pred ccccEEEecCCCCCccEEEEee-CCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCC--cEEEEec
Q 003012 465 YSSPTVVDLDGDGNLDILVGTS-FGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHG--NVAAWTA 541 (857)
Q Consensus 465 ~sspavaDlDGDG~~DIvVg~~-~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G--~l~~~~~ 541 (857)
+..|.-.-+|.||. |++... ++.|+.++.++..+..+... +.. +. ..++.+|. -|++++..+ .++.++.
T Consensus 130 ~~~P~~la~d~~g~--lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~---~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT--VLAYQRDDPRVRLISVDDNKVTTVHPG-FKG---GK-PAVTKDKQ-RVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCCEEEEEECSTTE--EEEEETTTTEEEEEETTTTEEEEEEET-CCB---CB-CEECTTSS-EEEEEBSSTTCEEEEEEG
T ss_pred cCCceEEEEeCCCC--EEEEecCCCcEEEEECCCCEEEEeecc-CCC---Cc-eeEecCCC-cEEEEecCCCceEEEEEc
Confidence 34566666777775 777665 46788998764433222111 111 22 33556665 466666544 6888877
Q ss_pred CCCeeEEEc----c-ccccccCCEEEecCC-CCcccEEEEecCCcEEEEECCCCCeecccccccCCc-cccc--eEEEec
Q 003012 542 EGKGIWEQH----L-KSLVTQGPSIGDVDG-DGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGR-VMNQ--VLLVDL 612 (857)
Q Consensus 542 ~G~~~W~~~----~-~~~~~~~vavgDlDG-DG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~-~~s~--~~v~Dl 612 (857)
.+....... . .......+++ +. +| .|+++..++.|+.++..++....-......+. ...| -...|-
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav---~p~~g--~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p 276 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVAL---DETEE--WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEE---CTTSS--EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEET
T ss_pred CCCceeEEeeeccchhcCCcEEEEE---eCCCC--eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeC
Confidence 543321111 1 1112223333 33 33 47777677889999876664321100001111 1111 112222
Q ss_pred cCCCCCCCCeEEEEEec-CCeEEEEcCCCCceEEEEeC-Cc----------ceeeEEEEeecCCCCccEEEEe--cCCcE
Q 003012 613 TKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCADVVDIG-ET----------SYSMVLADNVDGGDDLDLIVTT--MNGNV 678 (857)
Q Consensus 613 DgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~~i~~g-~~----------~~s~~~a~DlDGDG~~DLvv~t--~~G~V 678 (857)
+ + -.|+++.. .+.++.++..+........+ .. .+..|.-.-++.||. |+++. .++.|
T Consensus 277 ~------~-g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~--lyvad~~~~~~I 347 (409)
T 3hrp_A 277 V------D-SNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN--FYIVDGFKGYCL 347 (409)
T ss_dssp T------T-TEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC--EEEEETTTTCEE
T ss_pred C------C-CEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC--EEEEeCCCCCEE
Confidence 1 1 23454443 45677776544322222111 00 022344444778886 77775 46788
Q ss_pred EEEeC
Q 003012 679 FCFST 683 (857)
Q Consensus 679 ~~~~~ 683 (857)
..|+.
T Consensus 348 ~~~~~ 352 (409)
T 3hrp_A 348 RKLDI 352 (409)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 88883
No 218
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=46.61 E-value=3e+02 Score=29.48 Aligned_cols=192 Identities=14% Similarity=0.117 Sum_probs=97.9
Q ss_pred cEEEecCCCCCccEEEEeeCC---eEEEEeC-CCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCC--cEEEEec
Q 003012 468 PTVVDLDGDGNLDILVGTSFG---LFYVLDH-HGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHG--NVAAWTA 541 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G---~Lyv~~~-dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G--~l~~~~~ 541 (857)
.....+..||.. |++++.++ .|++++. +|+... +. .....+....+..||+.=++.+..++ .+++|+.
T Consensus 181 v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~~---l~--~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~ 254 (415)
T 2hqs_A 181 LMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVRQ---VA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL 254 (415)
T ss_dssp EEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEEE---EE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred ceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEEE---ee--cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEEC
Confidence 344557778864 55555443 7899884 555431 11 11123455667888876555665544 4888876
Q ss_pred CCCeeEEEccccccccCCEEEecCCCCcccEEEEec-CC--cEEEEECCCCCeecccccccCCccccceEEEeccCCCCC
Q 003012 542 EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTL-SG--NIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEK 618 (857)
Q Consensus 542 ~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~-~G--~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~g 618 (857)
.+..... +.. ....+....+..||.. |++++. ++ .++.++..+|+... ....+. .+.-..+..
T Consensus 255 ~~~~~~~--l~~-~~~~~~~~~~spdg~~-l~~~s~~~g~~~i~~~d~~~~~~~~---l~~~~~---~~~~~~~sp---- 320 (415)
T 2hqs_A 255 ASGQIRQ--VTD-GRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAPQR---ITWEGS---QNQDADVSS---- 320 (415)
T ss_dssp TTCCEEE--CCC-CSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCCEE---CCCSSS---EEEEEEECT----
T ss_pred CCCCEEe--CcC-CCCcccceEECCCCCE-EEEEECCCCCcEEEEEECCCCCEEE---EecCCC---cccCeEECC----
Confidence 4333211 111 1122334456677753 444443 33 68888876665321 111111 222233442
Q ss_pred CCCeEEEEEecC--CeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCC---cEEEEeCC
Q 003012 619 SKGLTIVTTSFD--GYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNG---NVFCFSTP 684 (857)
Q Consensus 619 DG~~DLvv~s~d--G~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G---~V~~~~~~ 684 (857)
||..-++....+ ..+++++..++....+.... .+....+..||.. |++++.++ .+++|+..
T Consensus 321 dG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~----~~~~~~~spdg~~-l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 321 DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF----LDETPSLAPNGTM-VIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS----SCEEEEECTTSSE-EEEEEEETTEEEEEEEETT
T ss_pred CCCEEEEEECcCCceEEEEEECCCCCEEEecCCC----CcCCeEEcCCCCE-EEEEEcCCCccEEEEEECC
Confidence 444333333332 47888887776554332221 2222346778875 44554444 68888764
No 219
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=46.28 E-value=2.1e+02 Score=27.56 Aligned_cols=217 Identities=13% Similarity=0.069 Sum_probs=102.0
Q ss_pred cceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEeCC--Cceeeeeeeeccc
Q 003012 432 AGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLDHH--GKIREKFPLEMAE 509 (857)
Q Consensus 432 aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~~d--G~~~~~~~~~~g~ 509 (857)
.+.|+.+|..+++........ ..+....+..||. .++...++.|++++.. ++...... +.
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~-------------~~v~~~~~spdg~--~l~~~~~~~i~~~d~~~~~~~~~~~~---~~ 82 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTP-------------ELFEAPNWSPDGK--YLLLNSEGLLYRLSLAGDPSPEKVDT---GF 82 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEES-------------SCCEEEEECTTSS--EEEEEETTEEEEEESSSCCSCEECCC---TT
T ss_pred ceeEEEEeCCCCceeeeccCC-------------cceEeeEECCCCC--EEEEEcCCeEEEEeCCCCCCceEecc---cc
Confidence 467999999988875433211 1244556777886 3334457899999854 44322111 11
Q ss_pred eeceeEEEeecCCCCeEEEEEeC---CCcEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCc--EEEE
Q 003012 510 IQGAVVAADINDDGKIELVTTDT---HGNVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN--IYVL 584 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~---~G~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~--I~~l 584 (857)
....+....+..||..=++.... ...++.++..+........ ...+....+..||..=++.+..++. ++.+
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~ 158 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTK----NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSM 158 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCS----SSSEEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred ccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeec----CCCccceEECCCCCEEEEEECCCCceEEEEE
Confidence 11122233456677643333321 2455666554333211111 1123334677777653445555664 4554
Q ss_pred ECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCC--eEEEEcCCCCceEEEEeCCcceeeEEEEeec
Q 003012 585 SGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDG--YLYLIDGPTSCADVVDIGETSYSMVLADNVD 662 (857)
Q Consensus 585 ~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG--~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlD 662 (857)
+..++....- ... ...+....+.. ||..-++....++ .+|.++..++....+.... ..+....+.
T Consensus 159 ~~~~~~~~~~---~~~---~~~~~~~~~s~----dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s 225 (297)
T 2ojh_A 159 DIDSGVETRL---THG---EGRNDGPDYSP----DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA---YGDWFPHPS 225 (297)
T ss_dssp ETTTCCEEEC---CCS---SSCEEEEEECT----TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS---EEEEEEEEC
T ss_pred ECCCCcceEc---ccC---CCccccceECC----CCCEEEEEecCCCCccEEEECCCCCCcEEEecCC---cccCCeEEC
Confidence 4544443211 111 11223334432 3433333333344 5666664444433321111 122333467
Q ss_pred CCCCccEEEEecC-----------CcEEEEeCC
Q 003012 663 GGDDLDLIVTTMN-----------GNVFCFSTP 684 (857)
Q Consensus 663 GDG~~DLvv~t~~-----------G~V~~~~~~ 684 (857)
.||+. |++++.+ +.+++|+..
T Consensus 226 ~dg~~-l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 226 PSGDK-VVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp TTSSE-EEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred CCCCE-EEEEEcCCCCCcccccCceEEEEEecC
Confidence 77764 4444433 457777764
No 220
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=46.20 E-value=3.2e+02 Score=29.69 Aligned_cols=117 Identities=14% Similarity=-0.036 Sum_probs=66.7
Q ss_pred eeEEEeecCCCCeEEE---EEeCCCcEEEEec-CC--------CeeEEEccccccccCCEEEecCCCCcccEEEEecCCc
Q 003012 513 AVVAADINDDGKIELV---TTDTHGNVAAWTA-EG--------KGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGN 580 (857)
Q Consensus 513 s~~vaD~DGDG~~DLv---v~~~~G~l~~~~~-~G--------~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~ 580 (857)
.+....++.||..=++ .++.++.+.+|+. ++ +..............+....++.++..-++.++.+|.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 4566777888864333 3445678888875 22 1112222211123344455566653333666778999
Q ss_pred EEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCC
Q 003012 581 IYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGP 639 (857)
Q Consensus 581 I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~ 639 (857)
+.+|+..++...... . + ....+....++. + ..-|++++.+|.+++++..
T Consensus 174 v~iwD~~~~~~~~~~--~--~-~~~~v~~v~wsp----d-g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 174 IAVLQVTETVKVCAT--L--P-STVAVTSVCWSP----K-GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEEEESSSEEEEEE--E--C-GGGCEEEEEECT----T-SSCEEEEETTSCEEEECTT
T ss_pred EEEEEcCCCcceeec--c--C-CCCceeEEEEcC----C-CCEEEEEcCCCcEEEEccC
Confidence 999997766432111 1 0 123445555653 2 2457888999999999876
No 221
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=46.12 E-value=2.6e+02 Score=28.65 Aligned_cols=223 Identities=11% Similarity=0.093 Sum_probs=101.2
Q ss_pred EEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeC----CeEEEEe--CC-Cceeeeeeeec
Q 003012 435 IVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSF----GLFYVLD--HH-GKIREKFPLEM 507 (857)
Q Consensus 435 v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~----G~Lyv~~--~d-G~~~~~~~~~~ 507 (857)
++.+|..+|++....... ...|...-++.||+. |++++.. +.+.+|+ .+ |+.........
T Consensus 31 ~~~~d~~~g~~~~~~~~~------------~~~p~~l~~spdg~~-l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~ 97 (361)
T 3scy_A 31 TFRFNEETGESLPLSDAE------------VANPSYLIPSADGKF-VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT 97 (361)
T ss_dssp EEEEETTTCCEEEEEEEE------------CSCCCSEEECTTSSE-EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEEeCCCCCEEEeeccc------------CCCCceEEECCCCCE-EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc
Confidence 555577888876554331 122444456778753 4555443 5665544 43 55432222211
Q ss_pred cceeceeEEEeecCCCCeEEEEEe-CCCcEEEEecC--CCeeE---E-Eccc-cc-----cccCCEEEecCCCCcccEEE
Q 003012 508 AEIQGAVVAADINDDGKIELVTTD-THGNVAAWTAE--GKGIW---E-QHLK-SL-----VTQGPSIGDVDGDGHSDVVV 574 (857)
Q Consensus 508 g~i~ss~~vaD~DGDG~~DLvv~~-~~G~l~~~~~~--G~~~W---~-~~~~-~~-----~~~~vavgDlDGDG~~DLvv 574 (857)
. ...+...-+ ||+. |++++ .++.+.+|+.. |...- . .... .. ....+....++.||.. |++
T Consensus 98 ~--~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~-l~~ 171 (361)
T 3scy_A 98 M--GADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY-LLA 171 (361)
T ss_dssp S--SSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE-EEE
T ss_pred C--CCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE-EEE
Confidence 1 112222223 5654 55555 45778888753 32210 0 0100 00 0112244567778864 445
Q ss_pred Eec-CCcEEEEECC--CC----C-eecc---cccccCCccccceEEEeccCCCCCCCCeEEEEEe-cCCeEEEEcCCCCc
Q 003012 575 PTL-SGNIYVLSGK--DG----S-KVRP---YPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTS-FDGYLYLIDGPTSC 642 (857)
Q Consensus 575 ~t~-~G~I~~l~~~--~G----~-~~~~---~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s-~dG~ly~~dg~~g~ 642 (857)
+.. ++.+++|.-. ++ + +... ....... ...+.-.-+.. ||.. +++.+ .++.+++++-.++.
T Consensus 172 ~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~sp----dg~~-l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 172 DDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP--GSGPRHLIFNS----DGKF-AYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp EETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT--TCCEEEEEECT----TSSE-EEEEETTTCEEEEEEEETTE
T ss_pred EeCCCCEEEEEEEcCCCCcccccceeecccccceecCC--CCCCeEEEEcC----CCCE-EEEEcCCCCeEEEEEecCCc
Confidence 443 5677777543 22 2 1100 0001110 11122233432 3433 44555 46777777654443
Q ss_pred eEEE---EeCCcceeeEEEEeecCCCCccEEEEecC--CcEEEEeCC
Q 003012 643 ADVV---DIGETSYSMVLADNVDGGDDLDLIVTTMN--GNVFCFSTP 684 (857)
Q Consensus 643 ~~~i---~~g~~~~s~~~a~DlDGDG~~DLvv~t~~--G~V~~~~~~ 684 (857)
...+ .........+...-+..||+. |+++... +.+.+|...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~-l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKY-LYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSE-EEEEECSSSCEEEEEEEC
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCE-EEEECCCCCCEEEEEEEc
Confidence 3222 111111122333347888875 5566544 678887753
No 222
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=44.40 E-value=4.1e+02 Score=30.41 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=17.2
Q ss_pred cEEEecCCCCCccEEEEeeCCeEEEEeCCC
Q 003012 468 PTVVDLDGDGNLDILVGTSFGLFYVLDHHG 497 (857)
Q Consensus 468 pavaDlDGDG~~DIvVg~~~G~Lyv~~~dG 497 (857)
+....+..||+. |+++ .++.|++++..+
T Consensus 154 ~~~~~~SPDG~~-la~~-~~~~i~~~d~~~ 181 (741)
T 2ecf_A 154 ATDAKLSPKGGF-VSFI-RGRNLWVIDLAS 181 (741)
T ss_dssp EEEEEECTTSSE-EEEE-ETTEEEEEETTT
T ss_pred cccccCCCCCCE-EEEE-eCCcEEEEecCC
Confidence 344557788864 3333 356899998543
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=42.56 E-value=3.7e+02 Score=29.37 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=69.2
Q ss_pred cCCCCeEEEEEeCCCcEEEEecCCCee-----EEE-cc----cccc--c-cCCEEEecCCCCcccEEEEec---------
Q 003012 520 NDDGKIELVTTDTHGNVAAWTAEGKGI-----WEQ-HL----KSLV--T-QGPSIGDVDGDGHSDVVVPTL--------- 577 (857)
Q Consensus 520 DGDG~~DLvv~~~~G~l~~~~~~G~~~-----W~~-~~----~~~~--~-~~vavgDlDGDG~~DLvv~t~--------- 577 (857)
..|| -+++.+..|.+++++..+... |.. .. .+.. . +.+++ +.|+. -+++...
T Consensus 235 ~~dG--~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~---~~~~~-~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 235 QKAG--RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY---HRALD-RIYLLVDQRDEWRHKT 308 (386)
T ss_dssp TTTT--EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEE---ETTTT-EEEEEEEECCTTCTTS
T ss_pred cCCC--cEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeE---CCCCC-eEEEEeccccccccCC
Confidence 3566 345566688999998755421 331 00 0111 1 11222 34443 3555532
Q ss_pred -CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEEec-CCeEEEEcCCCCceE-EEEeCCccee
Q 003012 578 -SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTTSF-DGYLYLIDGPTSCAD-VVDIGETSYS 654 (857)
Q Consensus 578 -~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~s~-dG~ly~~dg~~g~~~-~i~~g~~~~s 654 (857)
...|++++.++++.+..++... .+.-.-++ .||...||+.+. ++.++++|..++... .+..++.+-.
T Consensus 309 ~~~~V~viD~~t~kv~~~i~vg~------~~~~lavs----~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~ 378 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAKFEMGH------EIDSINVS----QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQ 378 (386)
T ss_dssp CEEEEEEEETTTCCEEEEEEEEE------EECEEEEC----SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCC
T ss_pred CCCEEEEEECCCCeEEEEEECCC------CcceEEEC----CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCce
Confidence 2469999998888876555431 11111222 356677888765 689999998876544 3555555555
Q ss_pred eEEEEee
Q 003012 655 MVLADNV 661 (857)
Q Consensus 655 ~~~a~Dl 661 (857)
+....|+
T Consensus 379 l~~s~d~ 385 (386)
T 3sjl_D 379 VITTADM 385 (386)
T ss_dssp EEEECCC
T ss_pred eEECCcC
Confidence 5555543
No 224
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=41.71 E-value=4e+02 Score=29.47 Aligned_cols=51 Identities=10% Similarity=0.153 Sum_probs=33.9
Q ss_pred CeEEEEcCCCCceE-EEEeCCcceeeEEEEeecCCCCccEEEEe-cCCcEEEEeCCC
Q 003012 631 GYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTT-MNGNVFCFSTPA 685 (857)
Q Consensus 631 G~ly~~dg~~g~~~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~~~ 685 (857)
+.+.++|..+.... .+..+..+ ...-|+.||+.-+++++ .++.|.+++..+
T Consensus 350 ~~VsVID~~T~kvv~~I~vg~~P----~gia~spDg~~~lyv~n~~s~~VsVID~~t 402 (426)
T 3c75_H 350 RFVVVLNAETGERINKIELGHEI----DSINVSQDAEPLLYALSAGTQTLHIYDAAT 402 (426)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEE----CEEEECCSSSCEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCeEEEEEECCCCc----CeEEEccCCCEEEEEEcCCCCeEEEEECCC
Confidence 35777776665433 34444432 22347889997788888 589999999754
No 225
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=38.43 E-value=3.7e+02 Score=28.19 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCceE-EEEeCCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 631 GYLYLIDGPTSCAD-VVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 631 G~ly~~dg~~g~~~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+.++++|..++... .+..+. .++ .-|..||+ -|++++. +.|.+|+..+
T Consensus 286 ~~v~viD~~t~~~v~~i~~~~-p~~----ia~spdg~-~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 286 AEIWVMDTKTKQRVARIPGRD-ALS----MTIDQQRN-LMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp SEEEEEETTTTEEEEEEECTT-CCE----EEEETTTT-EEEEECS-SCEEEEECSS
T ss_pred ceEEEEECCCCcEEEEEecCC-eeE----EEECCCCC-EEEEeCC-CeEEEEECCC
Confidence 36777776665433 344444 222 23678888 5777766 9999998643
No 226
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=36.41 E-value=4.2e+02 Score=28.27 Aligned_cols=137 Identities=19% Similarity=0.181 Sum_probs=71.6
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCC--eEEEEeC-CCceeeeeeeeccc
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFG--LFYVLDH-HGKIREKFPLEMAE 509 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G--~Lyv~~~-dG~~~~~~~~~~g~ 509 (857)
..|+.+|..+|+........ .......+..||..=++.+..++ .||+++. +|+.. . +..
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~-------------~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~--l~~-- 264 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP-------------RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-Q--VTD-- 264 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS-------------SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E--CCC--
T ss_pred cEEEEEECCCCcEEEeecCC-------------CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-e--CcC--
Confidence 46889999988764322110 12344567788875343444444 5898885 44432 1 111
Q ss_pred eeceeEEEeecCCCCeEEEEEeCCC--cEEEEecCCCeeEEEccccccccCCEEEecCCCCcccEEEEecC---CcEEEE
Q 003012 510 IQGAVVAADINDDGKIELVTTDTHG--NVAAWTAEGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLS---GNIYVL 584 (857)
Q Consensus 510 i~ss~~vaD~DGDG~~DLvv~~~~G--~l~~~~~~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~---G~I~~l 584 (857)
....+....+..||+.=++....++ .++.++..+...-.... ....+....+..||.. |+++... ..|+.+
T Consensus 265 ~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~---~~~~~~~~~~spdG~~-l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 265 GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW---EGSQNQDADVSSDGKF-MVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC---SSSEEEEEEECTTSSE-EEEEEECSSCEEEEEE
T ss_pred CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEec---CCCcccCeEECCCCCE-EEEEECcCCceEEEEE
Confidence 1122344556778875444443344 57777764433211111 1112233456677764 4444432 478888
Q ss_pred ECCCCCe
Q 003012 585 SGKDGSK 591 (857)
Q Consensus 585 ~~~~G~~ 591 (857)
+..+|+.
T Consensus 341 d~~~~~~ 347 (415)
T 2hqs_A 341 DLATGGV 347 (415)
T ss_dssp ETTTCCE
T ss_pred ECCCCCE
Confidence 8877765
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=32.62 E-value=4.2e+02 Score=27.13 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=78.1
Q ss_pred eCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEcccc-ccccCCEEEe
Q 003012 486 SFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKS-LVTQGPSIGD 563 (857)
Q Consensus 486 ~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~-~~~~~vavgD 563 (857)
..+.|+.++..+.....+... . .+...-++.||. ++++.. ..++.|+. +|+......... .....+.-.-
T Consensus 69 ~~~~i~~~d~~~~~~~~~~~~--~---~v~~i~~~~dg~--l~v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~ 140 (326)
T 2ghs_A 69 LERELHELHLASGRKTVHALP--F---MGSALAKISDSK--QLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGR 140 (326)
T ss_dssp GGTEEEEEETTTTEEEEEECS--S---CEEEEEEEETTE--EEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEE
T ss_pred CCCEEEEEECCCCcEEEEECC--C---cceEEEEeCCCe--EEEEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEE
Confidence 356788887544332222221 1 122222455664 555553 34888876 454322111111 1111223344
Q ss_pred cCCCCcccEEEEec-------CCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCCCCeEEEEE-ecCCeEEE
Q 003012 564 VDGDGHSDVVVPTL-------SGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKSKGLTIVTT-SFDGYLYL 635 (857)
Q Consensus 564 lDGDG~~DLvv~t~-------~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gDG~~DLvv~-s~dG~ly~ 635 (857)
++.||. +++++. .+.++.++ +|+...... .......+ -++ .||.. +++. ...+.+++
T Consensus 141 ~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~---~~~~~~~i---~~s----~dg~~-lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 141 MHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTKLFA---DISIPNSI---CFS----PDGTT-GYFVDTKVNRLMR 205 (326)
T ss_dssp ECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEEEEE---EESSEEEE---EEC----TTSCE-EEEEETTTCEEEE
T ss_pred ECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEEeeC---CCcccCCe---EEc----CCCCE-EEEEECCCCEEEE
Confidence 667775 666654 35788887 465432100 00011111 122 13333 4444 44567888
Q ss_pred EcCC--CC-ce---E-EEEeCCcceeeEEEEeecCCCCccEEEEec-CCcEEEEeCC
Q 003012 636 IDGP--TS-CA---D-VVDIGETSYSMVLADNVDGGDDLDLIVTTM-NGNVFCFSTP 684 (857)
Q Consensus 636 ~dg~--~g-~~---~-~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~-~G~V~~~~~~ 684 (857)
++-. ++ .. . ........ ..+...-+|.||. |++++. ++.|++|+..
T Consensus 206 ~d~~~~~Gl~~~~~~~~~~~~~~~-~~p~gi~~d~~G~--lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 206 VPLDARTGLPTGKAEVFIDSTGIK-GGMDGSVCDAEGH--IWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEBCTTTCCBSSCCEEEEECTTSS-SEEEEEEECTTSC--EEEEEETTTEEEEECTT
T ss_pred EEcccccCCcccCceEEEECCCCC-CCCCeeEECCCCC--EEEEEeCCCEEEEECCC
Confidence 7643 33 21 1 12221111 1122223667774 777764 4678888763
No 228
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=32.25 E-value=5e+02 Score=27.89 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=61.1
Q ss_pred ccceEEEeecCCCCccEEEEeeccCCcccccCCccccccccccccccccceEEEEECCCCceEEEEeccCCCCccccccc
Q 003012 384 LSTPVIADIDNDGVSEMIIAVSYFFDHEYYDNPEHLKELGGIDIGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAY 463 (857)
Q Consensus 384 ~sspavaDiDGDG~~DIVv~~s~~~d~~~y~n~~~~~~~~~i~~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~ 463 (857)
+..|...-+|.||. |+++.. ..+.|..++.+++++.-....
T Consensus 130 ~~~P~~la~d~~g~--lyv~d~-------------------------~~~~I~~id~~~g~~~~~~~~------------ 170 (409)
T 3hrp_A 130 FKYMWGIAAVGNNT--VLAYQR-------------------------DDPRVRLISVDDNKVTTVHPG------------ 170 (409)
T ss_dssp CCCEEEEEECSTTE--EEEEET-------------------------TTTEEEEEETTTTEEEEEEET------------
T ss_pred cCCceEEEEeCCCC--EEEEec-------------------------CCCcEEEEECCCCEEEEeecc------------
Confidence 45676666777776 665532 125688999988776422211
Q ss_pred cccccEEEecCCCCCccEEEEeeCC--eEEEEeCCCceee-ee-ee-e-ccceeceeEEEeecC-CCCeEEEEEeCCCcE
Q 003012 464 IYSSPTVVDLDGDGNLDILVGTSFG--LFYVLDHHGKIRE-KF-PL-E-MAEIQGAVVAADIND-DGKIELVTTDTHGNV 536 (857)
Q Consensus 464 ~~sspavaDlDGDG~~DIvVg~~~G--~Lyv~~~dG~~~~-~~-~~-~-~g~i~ss~~vaD~DG-DG~~DLvv~~~~G~l 536 (857)
...+. ..++.||. -|+++...+ .|+.++..+.... .. .. . .......++ ++. +| .|+++..++.+
T Consensus 171 -~~~~~-ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~ia---v~p~~g--~lyv~d~~~~I 242 (409)
T 3hrp_A 171 -FKGGK-PAVTKDKQ-RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVA---LDETEE--WLYFVDSNKNF 242 (409)
T ss_dssp -CCBCB-CEECTTSS-EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCE---ECTTSS--EEEEECTTCEE
T ss_pred -CCCCc-eeEecCCC-cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEE---EeCCCC--eEEEEECCCcE
Confidence 01123 34566665 456666544 7888886543221 11 00 0 111122233 344 34 56777777788
Q ss_pred EEEecCCC
Q 003012 537 AAWTAEGK 544 (857)
Q Consensus 537 ~~~~~~G~ 544 (857)
+.|+.++.
T Consensus 243 ~~~d~~~~ 250 (409)
T 3hrp_A 243 GRFNVKTQ 250 (409)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 88887543
No 229
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=30.93 E-value=4.3e+02 Score=26.71 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=54.4
Q ss_pred cCCCCCccEEEEe-eCCeEEEEeCCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCC--C-cEEEEe-cCCCeeE
Q 003012 473 LDGDGNLDILVGT-SFGLFYVLDHHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTH--G-NVAAWT-AEGKGIW 547 (857)
Q Consensus 473 lDGDG~~DIvVg~-~~G~Lyv~~~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~--G-~l~~~~-~~G~~~W 547 (857)
++.||. |++.. ..++|+.++.+|+....+.. + ..+...-++.||. |++++.. + .++.++ .+|+...
T Consensus 39 ~~~~g~--lyv~d~~~~~I~~~d~~g~~~~~~~~--~---~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 39 SAPDGT--IFVTNHEVGEIVSITPDGNQQIHATV--E---GKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp ECTTSC--EEEEETTTTEEEEECTTCCEEEEEEC--S---SEEEEEEECTTSC--EEEEEECTTSCEEEEEECTTSCEEE
T ss_pred ECCCCC--EEEEeCCCCeEEEECCCCceEEEEeC--C---CCceeEEEcCCCc--EEEEeccCCcceEEEEcCCCCeEEE
Confidence 445664 77776 46789999987765433322 1 1344444677886 5666533 2 466665 4665432
Q ss_pred EEcccc-ccccCCEEEecCCCCcccEEEEe-cCCcEEEEECCCC
Q 003012 548 EQHLKS-LVTQGPSIGDVDGDGHSDVVVPT-LSGNIYVLSGKDG 589 (857)
Q Consensus 548 ~~~~~~-~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~l~~~~G 589 (857)
...... .....+ ++. .++ .++++. ..+.+|.++..++
T Consensus 110 ~~~~~~~~~~~g~--~~~-~~~--~~~v~d~~~g~i~~~d~~~~ 148 (306)
T 2p4o_A 110 LLTLPDAIFLNGI--TPL-SDT--QYLTADSYRGAIWLIDVVQP 148 (306)
T ss_dssp EEECTTCSCEEEE--EES-SSS--EEEEEETTTTEEEEEETTTT
T ss_pred EEeCCCccccCcc--ccc-CCC--cEEEEECCCCeEEEEeCCCC
Confidence 222111 111111 222 122 255555 4789999987654
No 230
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=28.94 E-value=3.1e+02 Score=29.77 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=68.1
Q ss_pred cEEEecCCCCCccEEE----EeeCCeEEEEeC-CC--------ceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCC
Q 003012 468 PTVVDLDGDGNLDILV----GTSFGLFYVLDH-HG--------KIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHG 534 (857)
Q Consensus 468 pavaDlDGDG~~DIvV----g~~~G~Lyv~~~-dG--------~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G 534 (857)
+....++.||.. |++ ++.++.|.+++- ++ +.+...... ......+....++.++..-|+.++.++
T Consensus 95 v~~l~~spdg~~-lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 95 IHHLALSCDNLT-LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL-KDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp EEEEEECTTSCE-EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECC-CSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred ccEEEEcCCCCE-EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeecc-CCCCCceEEEEECCCCCCEEEEEECCC
Confidence 556678888863 332 234567888872 22 111111111 111234556667766445577788899
Q ss_pred cEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCee
Q 003012 535 NVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKV 592 (857)
Q Consensus 535 ~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~ 592 (857)
.+.+|+. ++....... .....+....++.||. -|++++.+|.|.+|+.. |+..
T Consensus 173 ~v~iwD~~~~~~~~~~~---~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 173 SIAVLQVTETVKVCATL---PSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp CEEEEEESSSEEEEEEE---CGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CCEE
T ss_pred eEEEEEcCCCcceeecc---CCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-Cccc
Confidence 9999986 343322211 1123445566777775 47888889999999875 5443
No 231
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=25.75 E-value=3.6e+02 Score=28.45 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=57.9
Q ss_pred EEEEecCCcEEEEECCCCCeecccccccCCccccceEEEeccCCCCCC---CCeEEEEEecCCeEEEEcCCCCceEEEEe
Q 003012 572 VVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVMNQVLLVDLTKRGEKS---KGLTIVTTSFDGYLYLIDGPTSCADVVDI 648 (857)
Q Consensus 572 Lvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~s~~~v~DlDgDg~gD---G~~DLvv~s~dG~ly~~dg~~g~~~~i~~ 648 (857)
|+.+..++.+.+|+..++.............-...+.-.++..-...+ ...-|+.++.|+.+.+.+-.++.......
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence 455566788888887666543222211111111222223331000000 01346778889988888754433222111
Q ss_pred CCcceeeEEEEeecCCCCccEEEEecCCcEEEEeCCC
Q 003012 649 GETSYSMVLADNVDGGDDLDLIVTTMNGNVFCFSTPA 685 (857)
Q Consensus 649 g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~~~~~~~ 685 (857)
+.. +.+....+..+|..-|+.++.+|.|.+|+...
T Consensus 184 ~~~--~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 184 PLS--SPGISVQFRPSNPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp ECS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred CCC--CCcEEEEECCCCCceEEecCCCCEEEEEECCC
Confidence 111 12333446677665688889999999999754
No 232
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=25.58 E-value=27 Score=32.57 Aligned_cols=68 Identities=12% Similarity=0.253 Sum_probs=0.0
Q ss_pred ccccccCcccccccccCccccccCccccccccccccccccCCCCCCcccccccccccccceeecccccccceEEEeecCC
Q 003012 316 PVATAENDQALDENADSSFELFRDTDELADEYNYDYDDYVDDAMWGDEEWTEEQHEKIEDYVNVDSHILSTPVIADIDND 395 (857)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~wg~~~W~~~~~~~~~~~i~vd~~i~sspavaDiDGD 395 (857)
+..-|-..+.+|+--=.|+.+-...+.-|. |.+++|...-..-+. +......++|+|||
T Consensus 14 g~~~VvseG~lEP~SiGSYsV~lY~~~~p~---f~~~dF~~G~v~~RD------------------GtI~~a~laDlngd 72 (135)
T 3od9_A 14 GQVVTVSEGRGEPASTGSYDVRLYSGANPQ---FPLDQFIDGKVLPRD------------------GSIKELKLLDLNGD 72 (135)
T ss_dssp SCEEEEEECTTCCSSSEEEEEEEECCCSTT---STTSSEEEEEEEEES------------------SEEEEEEEECSSSS
T ss_pred CcEEEEecCCCCccccccEEEEEEecCCCC---CChhHhhhcceeccC------------------CeEEEEEEEecCCC
Q ss_pred CCccEEEEe
Q 003012 396 GVSEMIIAV 404 (857)
Q Consensus 396 G~~DIVv~~ 404 (857)
|.++|++..
T Consensus 73 ~~~eLiVt~ 81 (135)
T 3od9_A 73 KQPELIVVV 81 (135)
T ss_dssp SSCEEEEEE
T ss_pred CCeeEEEEE
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=25.21 E-value=5.5e+02 Score=26.00 Aligned_cols=68 Identities=15% Similarity=0.206 Sum_probs=35.4
Q ss_pred ecCCCCeEEEEEe-CCCcEEEEecCCCe--eEEE--ccccccccCCEEEecCCCCcccEEEEecC-----------CcEE
Q 003012 519 INDDGKIELVTTD-THGNVAAWTAEGKG--IWEQ--HLKSLVTQGPSIGDVDGDGHSDVVVPTLS-----------GNIY 582 (857)
Q Consensus 519 ~DGDG~~DLvv~~-~~G~l~~~~~~G~~--~W~~--~~~~~~~~~vavgDlDGDG~~DLvv~t~~-----------G~I~ 582 (857)
++.||.. |++++ ..+.++.|+.++.. .+.. ...+ +.-.-+|.||. |+++... +.|+
T Consensus 192 ~~~dg~~-lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-----P~gi~~d~~G~--l~va~~~~~~~~~~~~~~~~v~ 263 (322)
T 2fp8_A 192 VSADSSF-VLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-----PGNIKRNADGH--FWVSSSEELDGNMHGRVDPKGI 263 (322)
T ss_dssp ECTTSSE-EEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-----EEEEEECTTSC--EEEEEEEETTSSTTSCEEEEEE
T ss_pred ECCCCCE-EEEEeCCCCeEEEEECCCCcCCccceEEeCCC-----CCCeEECCCCC--EEEEecCcccccccCCCccEEE
Confidence 4566653 45554 45778888765421 1111 1111 22234566774 6776543 4677
Q ss_pred EEECCCCCeeccc
Q 003012 583 VLSGKDGSKVRPY 595 (857)
Q Consensus 583 ~l~~~~G~~~~~~ 595 (857)
.++. +|+.+..+
T Consensus 264 ~~d~-~G~~~~~~ 275 (322)
T 2fp8_A 264 KFDE-FGNILEVI 275 (322)
T ss_dssp EECT-TSCEEEEE
T ss_pred EECC-CCCEEEEE
Confidence 7775 47665433
No 234
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=24.43 E-value=6.8e+02 Score=26.85 Aligned_cols=109 Identities=11% Similarity=0.167 Sum_probs=55.8
Q ss_pred EEEEe-eCCeEEEEeCCCceeeeeeeec----cceeceeEEEee---cCCCCeEEEEEeC-------------CCcEEEE
Q 003012 481 ILVGT-SFGLFYVLDHHGKIREKFPLEM----AEIQGAVVAADI---NDDGKIELVTTDT-------------HGNVAAW 539 (857)
Q Consensus 481 IvVg~-~~G~Lyv~~~dG~~~~~~~~~~----g~i~ss~~vaD~---DGDG~~DLvv~~~-------------~G~l~~~ 539 (857)
+++++ ..+.|+.++..+.......+.. +.-...+.-.-+ |.+|++=++ .+. ...+..|
T Consensus 27 ~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv-~~~~~af~~~g~~~~g~~~v~~~ 105 (334)
T 2p9w_A 27 FYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAV-MKNAKSFNFADQSSHGASSFHSF 105 (334)
T ss_dssp EEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEE-EEETTTTCTTSCCSSSCCEEEEE
T ss_pred EEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEE-EcccccccccccccCCCCEEEEE
Confidence 44554 3567888876533222221110 111112344455 567776443 331 3558888
Q ss_pred ecC----CCeeEEEccccccc--------cCCEEEecCCCCcccEEE-EecC-CcEEEEECCCCCe
Q 003012 540 TAE----GKGIWEQHLKSLVT--------QGPSIGDVDGDGHSDVVV-PTLS-GNIYVLSGKDGSK 591 (857)
Q Consensus 540 ~~~----G~~~W~~~~~~~~~--------~~vavgDlDGDG~~DLvv-~t~~-G~I~~l~~~~G~~ 591 (857)
+.. |+..|......... ....+.|+--|..-.++| .+.. +.|+.+.. +|+.
T Consensus 106 Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p-dG~~ 170 (334)
T 2p9w_A 106 NLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA-DGKT 170 (334)
T ss_dssp ESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT-TSCC
T ss_pred cCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC-CCCE
Confidence 866 88999876532111 111244433333334666 4456 78888886 5664
No 235
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=22.83 E-value=6.6e+02 Score=26.15 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=34.8
Q ss_pred ceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEee--CCeEEEEe-CCCceee
Q 003012 433 GAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTS--FGLFYVLD-HHGKIRE 501 (857)
Q Consensus 433 G~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~--~G~Lyv~~-~dG~~~~ 501 (857)
+.|.+||..++++.....+... .. .....|.-.-++.||+ -+++++. .+.|.+++ .+++.+.
T Consensus 81 ~~v~v~d~~t~~~~~~i~~~~~----~~--~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~~ 145 (361)
T 2oiz_A 81 DVVEVWDADKLTFEKEISLPPK----RV--QGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYVE 145 (361)
T ss_dssp EEEEEEETTTCCEEEEEEECTT----BC--CBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEEE
T ss_pred CEEEEEECcCCcEEEEEEcCcc----cc--ccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEEE
Confidence 5688999998887665543210 00 0011233344677886 3555554 35688888 4555443
No 236
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=21.67 E-value=6.9e+02 Score=25.92 Aligned_cols=148 Identities=11% Similarity=0.016 Sum_probs=0.0
Q ss_pred ccccccceEEEEECCCCceEEEEeccCCCCccccccccccccEEEecCCCCCccEEEEeeCCeEEEEe-CCCceeeeeee
Q 003012 427 IGKYVAGAIVVFNLDTKQVKWTTDLDLSTDNASFRAYIYSSPTVVDLDGDGNLDILVGTSFGLFYVLD-HHGKIREKFPL 505 (857)
Q Consensus 427 ~~~~~aG~v~a~d~~tG~i~W~~~l~ls~~~~~~~~~~~sspavaDlDGDG~~DIvVg~~~G~Lyv~~-~dG~~~~~~~~ 505 (857)
.+....|.|..+|+++|++.-+. ++ ..+-..-+.-+|..=.++.-.++.+++++ .+++.+..++.
T Consensus 69 ~stG~~g~v~~iD~~Tgkv~~~~-l~-------------~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~ 134 (268)
T 3nok_A 69 ESTGHQGTLRQLSLESAQPVWME-RL-------------GNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY 134 (268)
T ss_dssp EEETTTTEEEECCSSCSSCSEEE-EC-------------TTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred EEcCCCCEEEEEECCCCcEEeEE-CC-------------CCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Q ss_pred eccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEccccccccCCEEEecCCCCcccEEEEe-cCCcEEE
Q 003012 506 EMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQHLKSLVTQGPSIGDVDGDGHSDVVVPT-LSGNIYV 583 (857)
Q Consensus 506 ~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~~~~~~~~~vavgDlDGDG~~DLvv~t-~~G~I~~ 583 (857)
....+.-. .||. -|++++..+.++.++. +.+..=...+.........+-.+.-.+- .|++.. .+..|..
T Consensus 135 ~~eGwGLt-------~Dg~-~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG-~lyanvw~s~~I~v 205 (268)
T 3nok_A 135 SGEGWGLC-------YWNG-KLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANG-VIYANIWHSSDVLE 205 (268)
T ss_dssp SSCCCCEE-------EETT-EEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETT-EEEEEETTCSEEEE
T ss_pred CCceeEEe-------cCCC-EEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCC-EEEEEECCCCeEEE
Q ss_pred EECCCCCeeccccc
Q 003012 584 LSGKDGSKVRPYPY 597 (857)
Q Consensus 584 l~~~~G~~~~~~~~ 597 (857)
++..+|+.+..+..
T Consensus 206 IDp~TG~V~~~Idl 219 (268)
T 3nok_A 206 IDPATGTVVGVIDA 219 (268)
T ss_dssp ECTTTCBEEEEEEC
T ss_pred EeCCCCcEEEEEEC
No 237
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=20.88 E-value=7.3e+02 Score=25.90 Aligned_cols=187 Identities=10% Similarity=0.018 Sum_probs=87.1
Q ss_pred EEEEeeCCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeCCCcEEEEec-CCCeeEEEc--------
Q 003012 481 ILVGTSFGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDTHGNVAAWTA-EGKGIWEQH-------- 550 (857)
Q Consensus 481 IvVg~~~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~-~G~~~W~~~-------- 550 (857)
|+-++.++.+.+++ .++........ ....+....+.-++..-|+.++.++.+.+|+. ++.......
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~~~----~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAGYP----LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEE----CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred EEEEECCCeEEEEECCCCceeeeecC----CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 44456678888888 34443321111 12234445566677667888889999999986 333222110
Q ss_pred ------ccc--------ccccCC-EEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCC----cc--------
Q 003012 551 ------LKS--------LVTQGP-SIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHG----RV-------- 603 (857)
Q Consensus 551 ------~~~--------~~~~~v-avgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g----~~-------- 603 (857)
... .....+ .+.=...||. -|+.+..++.+.+|+...+.....+...... .+
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS 313 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEEC
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc
Confidence 000 000111 1111223443 3666667788888876555432221110000 00
Q ss_pred ----ccceEEEeccCCCCCCCCeEEEEEecCCeEEEEcCCCCceEEEEeCCcceeeEEEEeecCCCCccEEEEecCCcEE
Q 003012 604 ----MNQVLLVDLTKRGEKSKGLTIVTTSFDGYLYLIDGPTSCADVVDIGETSYSMVLADNVDGGDDLDLIVTTMNGNVF 679 (857)
Q Consensus 604 ----~s~~~v~DlDgDg~gDG~~DLvv~s~dG~ly~~dg~~g~~~~i~~g~~~~s~~~a~DlDGDG~~DLvv~t~~G~V~ 679 (857)
.......+ ..+..-++.++.+|.+++++-..+.......+.. ..+...-|..||+. |++++. +.+.
T Consensus 314 ~~~~~~~~~~~~------~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~-LA~as~-~Gv~ 383 (393)
T 4gq1_A 314 LFPSLLGACPHP------RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSH-LAIATE-GSVL 383 (393)
T ss_dssp SSCCSSCCEECS------SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSE-EEEEES-SEEE
T ss_pred ccCcceeEEEcc------CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCE-EEEEeC-CCeE
Confidence 00000110 1233445667789999999877654433222211 12344458899975 555554 4455
Q ss_pred EEe
Q 003012 680 CFS 682 (857)
Q Consensus 680 ~~~ 682 (857)
+++
T Consensus 384 lvr 386 (393)
T 4gq1_A 384 LTR 386 (393)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 238
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=20.30 E-value=8.2e+02 Score=26.23 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=55.0
Q ss_pred ceEEEEECC---CCceEEEEeccCCCCc-cccccccccccEEEe--cCCCCCccEEE-EeeC-CeEEEEeCCCceeeeee
Q 003012 433 GAIVVFNLD---TKQVKWTTDLDLSTDN-ASFRAYIYSSPTVVD--LDGDGNLDILV-GTSF-GLFYVLDHHGKIREKFP 504 (857)
Q Consensus 433 G~v~a~d~~---tG~i~W~~~l~ls~~~-~~~~~~~~sspavaD--lDGDG~~DIvV-g~~~-G~Lyv~~~dG~~~~~~~ 504 (857)
..|+++|+. +++..|...+.-.... .+.....+ ..+.| +|.+| .++| .+.. +.|+.++.+|+....|-
T Consensus 100 ~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~G--naYVt~s~~~~~I~rV~pdG~~~~~~~ 175 (334)
T 2p9w_A 100 SSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDG--NSYVAFALGMPAIARVSADGKTVSTFA 175 (334)
T ss_dssp CEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTS--CEEEEEEESSCEEEEECTTSCCEEEEE
T ss_pred CEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCC--CEEEeCCCCCCeEEEEeCCCCEEeeee
Confidence 569999999 8999999876311000 00000011 12334 34555 4566 4556 78999999998443332
Q ss_pred eeccc-----eeceeEEEeecCCCCeEEEEEeCCCcEEEEecC
Q 003012 505 LEMAE-----IQGAVVAADINDDGKIELVTTDTHGNVAAWTAE 542 (857)
Q Consensus 505 ~~~g~-----i~ss~~vaD~DGDG~~DLvv~~~~G~l~~~~~~ 542 (857)
+.... ....+++ ..||..=|+.-+ .+.++.|+..
T Consensus 176 ~~~~~~~~~~G~nGIv~---~pdg~~Liv~~~-~g~L~~fD~~ 214 (334)
T 2p9w_A 176 WESGNGGQRPGYSGITF---DPHSNKLIAFGG-PRALTAFDVS 214 (334)
T ss_dssp ECCCCSSSCCSCSEEEE---ETTTTEEEEESS-SSSEEEEECS
T ss_pred ecCCCcccccCcceEEE---eCCCCEEEEEcC-CCeEEEEcCC
Confidence 22111 1122332 456654444334 7888888765
No 239
>2y72_A Collagenase, collagenase G; polycystic kidney disease domain, beta barrel, collagen RECO domain, hydrolase; 1.18A {Clostridium histolyticum} PDB: 3jqu_A 3js7_A
Probab=20.26 E-value=1.2e+02 Score=25.45 Aligned_cols=32 Identities=19% Similarity=0.529 Sum_probs=22.9
Q ss_pred eccccCCCceeeEecccCCcccceEEEEEEEcCCCceEEEeEEee
Q 003012 769 QSQIFARRGKYRIKLPTVGVRTTGTVLVEMVDKNGLYFSDEFSLT 813 (857)
Q Consensus 769 ~~~~~~~~g~~~~~~~~~~~r~~~~v~v~~~~~~~~~~~d~~~~s 813 (857)
+...|.++|.|. |++.++|.+|+..+++..|+
T Consensus 51 ~~hty~~~G~Y~-------------v~LtVtd~~G~~~t~~~~V~ 82 (85)
T 2y72_A 51 SVHAYKKAGTYN-------------VTLKVTDDKGATATESFTIE 82 (85)
T ss_dssp EEEECSSCEEEE-------------EEEEEEETTSCEEEEEEEEE
T ss_pred eEEEcCCCeEEE-------------EEEEEEECCCCEEEEEEEEE
Confidence 345789999995 45557788888777776654
No 240
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=20.09 E-value=7.2e+02 Score=25.50 Aligned_cols=186 Identities=9% Similarity=0.085 Sum_probs=103.2
Q ss_pred cCCCCCccEEEEee---CCeEEEEe-CCCceeeeeeeeccceeceeEEEeecCCCCeEEEEEeC-CCcEEEEec-CCCee
Q 003012 473 LDGDGNLDILVGTS---FGLFYVLD-HHGKIREKFPLEMAEIQGAVVAADINDDGKIELVTTDT-HGNVAAWTA-EGKGI 546 (857)
Q Consensus 473 lDGDG~~DIvVg~~---~G~Lyv~~-~dG~~~~~~~~~~g~i~ss~~vaD~DGDG~~DLvv~~~-~G~l~~~~~-~G~~~ 546 (857)
+++|| -+++++. .+.|.+++ .+|+.....++........+ .+++ . .|++++. ++.+.+++. +++.+
T Consensus 28 ~~~dg--~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi---~~~g--~-~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 28 YAEND--TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGL---TLLN--E-KLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp ECSTT--EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEE---EEET--T-EEEEEETTCSEEEEEETTTTEEE
T ss_pred EeCCC--eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEE---EEeC--C-EEEEEEecCCEEEEEECCCCcEE
Confidence 45665 5777654 35799999 58887766655421111112 2233 2 5666654 467888886 56665
Q ss_pred EEEccccccccCCEEEecCCCCcccEEEEecCCcEEEEECCCCCeecccccccCCccc---cceEEEeccCCCCCCCCeE
Q 003012 547 WEQHLKSLVTQGPSIGDVDGDGHSDVVVPTLSGNIYVLSGKDGSKVRPYPYRTHGRVM---NQVLLVDLTKRGEKSKGLT 623 (857)
Q Consensus 547 W~~~~~~~~~~~vavgDlDGDG~~DLvv~t~~G~I~~l~~~~G~~~~~~~~~~~g~~~---s~~~v~DlDgDg~gDG~~D 623 (857)
-+.... ......+. -||. -+++++.++.++.++..+.+.....+....+... ..+.+. + | .
T Consensus 100 ~~i~~g--~~~g~glt---~Dg~-~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--d------g--~ 163 (266)
T 2iwa_A 100 KNFTHQ--MKDGWGLA---TDGK-ILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--N------G--E 163 (266)
T ss_dssp EEEECC--SSSCCEEE---ECSS-SEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--T------T--E
T ss_pred EEEECC--CCCeEEEE---ECCC-EEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--C------C--E
Confidence 544433 12222322 2443 4888887889999998887766554433222211 122222 2 2 4
Q ss_pred EEEEec-CCeEEEEcCCCCce-EEEEeCCc----------ceeeEEEEeecCCCCccEEEEe-cCCcEEEEeC
Q 003012 624 IVTTSF-DGYLYLIDGPTSCA-DVVDIGET----------SYSMVLADNVDGGDDLDLIVTT-MNGNVFCFST 683 (857)
Q Consensus 624 Lvv~s~-dG~ly~~dg~~g~~-~~i~~g~~----------~~s~~~a~DlDGDG~~DLvv~t-~~G~V~~~~~ 683 (857)
+++... .+.+.++|..++.. .++.+++. ....+.-.=++.||+. ++|+. ..+.++.++.
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~-lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR-IFVTGKLWPKLFEIKL 235 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE-EEEEETTCSEEEEEEE
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCE-EEEECCCCCeEEEEEE
Confidence 666664 57888999877654 45665421 0011222226777754 55554 5677777765
Done!