Query 003013
Match_columns 857
No_of_seqs 383 out of 4132
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 15:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.9E-41 8.4E-46 383.7 24.1 504 2-546 37-731 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.7E-39 1.2E-43 388.3 35.6 338 382-778 554-908 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.5E-29 5.4E-34 306.1 28.4 481 307-821 116-605 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.3E-28 5.1E-33 297.6 29.0 497 265-801 92-608 (968)
5 PLN03210 Resistant to P. syrin 99.9 2.7E-23 5.9E-28 252.3 26.9 353 346-758 548-909 (1153)
6 KOG0444 Cytoskeletal regulator 99.8 4E-23 8.8E-28 212.2 -6.0 341 387-805 32-380 (1255)
7 KOG0444 Cytoskeletal regulator 99.8 1.1E-21 2.5E-26 201.7 -5.2 354 353-793 29-392 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 6.3E-23 1.4E-27 200.4 -14.3 423 300-799 82-540 (565)
9 KOG0618 Serine/threonine phosp 99.8 1.1E-21 2.4E-26 211.7 -6.7 418 347-822 36-488 (1081)
10 KOG4194 Membrane glycoprotein 99.8 8.4E-20 1.8E-24 186.9 4.4 337 382-817 98-446 (873)
11 KOG4194 Membrane glycoprotein 99.8 1.9E-19 4E-24 184.4 6.9 356 332-772 79-448 (873)
12 KOG0472 Leucine-rich repeat pr 99.7 5.1E-20 1.1E-24 180.2 -7.8 392 357-821 46-539 (565)
13 KOG0618 Serine/threonine phosp 99.7 2.7E-19 5.9E-24 193.4 -5.8 392 333-801 47-490 (1081)
14 PRK15387 E3 ubiquitin-protein 99.6 5.6E-14 1.2E-18 158.1 16.6 116 645-799 342-457 (788)
15 PRK15387 E3 ubiquitin-protein 99.5 2E-13 4.4E-18 153.6 17.8 114 694-822 343-457 (788)
16 PF00931 NB-ARC: NB-ARC domain 99.3 4.2E-12 9.1E-17 131.9 10.5 96 148-247 1-98 (287)
17 PRK15370 E3 ubiquitin-protein 99.3 6.5E-12 1.4E-16 142.7 12.8 117 385-518 197-313 (754)
18 PRK15370 E3 ubiquitin-protein 99.3 1.2E-11 2.7E-16 140.5 12.1 93 412-518 179-271 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.2 2E-11 4.3E-16 141.1 7.1 125 387-518 523-651 (889)
20 KOG0617 Ras suppressor protein 99.2 8E-13 1.7E-17 114.7 -4.3 155 644-805 32-190 (264)
21 KOG0617 Ras suppressor protein 99.0 9.7E-12 2.1E-16 108.0 -3.3 164 326-505 28-194 (264)
22 KOG4341 F-box protein containi 98.9 2.8E-11 6E-16 120.7 -5.1 262 405-750 158-435 (483)
23 KOG4341 F-box protein containi 98.9 5.7E-11 1.2E-15 118.5 -5.5 68 642-709 369-442 (483)
24 KOG4237 Extracellular matrix p 98.8 3E-10 6.5E-15 112.5 -3.7 126 335-471 71-199 (498)
25 cd00116 LRR_RI Leucine-rich re 98.7 1.7E-09 3.7E-14 114.5 -1.7 35 483-519 137-175 (319)
26 PRK15386 type III secretion pr 98.7 1.2E-07 2.5E-12 98.2 10.3 159 644-823 51-213 (426)
27 KOG4237 Extracellular matrix p 98.6 1.3E-09 2.8E-14 108.1 -4.5 112 385-501 65-181 (498)
28 PRK15386 type III secretion pr 98.6 1.7E-07 3.6E-12 97.1 10.1 137 668-820 51-187 (426)
29 cd00116 LRR_RI Leucine-rich re 98.5 1.8E-08 3.8E-13 106.7 0.0 13 459-471 80-92 (319)
30 PRK09376 rho transcription ter 98.3 7.8E-07 1.7E-11 91.1 4.8 54 169-223 168-223 (416)
31 cd01128 rho_factor Transcripti 98.2 2.1E-06 4.6E-11 84.6 6.4 55 169-224 15-71 (249)
32 PF14580 LRR_9: Leucine-rich r 98.2 1.9E-06 4.1E-11 79.6 5.2 124 387-518 19-149 (175)
33 PTZ00202 tuzin; Provisional 98.2 3E-05 6.5E-10 80.0 14.1 94 140-247 259-352 (550)
34 KOG3207 Beta-tubulin folding c 98.2 4E-07 8.7E-12 92.1 0.2 174 643-821 119-312 (505)
35 KOG3207 Beta-tubulin folding c 98.2 5.8E-07 1.2E-11 91.0 1.1 61 408-470 118-182 (505)
36 KOG1259 Nischarin, modulator o 98.0 9.1E-07 2E-11 84.8 -0.2 97 693-797 284-384 (490)
37 KOG1259 Nischarin, modulator o 98.0 1.6E-06 3.5E-11 83.1 0.4 127 387-520 284-410 (490)
38 KOG0532 Leucine-rich repeat (L 98.0 3.9E-07 8.4E-12 95.2 -4.3 39 647-687 213-251 (722)
39 KOG2120 SCF ubiquitin ligase, 97.9 7.7E-07 1.7E-11 85.4 -3.7 178 333-521 187-375 (419)
40 COG4886 Leucine-rich repeat (L 97.9 1.3E-05 2.7E-10 87.5 4.6 173 622-804 117-294 (394)
41 KOG0532 Leucine-rich repeat (L 97.8 6.4E-07 1.4E-11 93.6 -6.1 162 633-804 86-250 (722)
42 PRK11331 5-methylcytosine-spec 97.8 4.4E-05 9.5E-10 80.5 7.0 70 142-219 174-243 (459)
43 PRK00411 cdc6 cell division co 97.8 0.00013 2.8E-09 79.5 10.6 103 143-247 30-133 (394)
44 PF14580 LRR_9: Leucine-rich r 97.7 4.5E-05 9.7E-10 70.6 5.6 107 407-520 15-124 (175)
45 KOG2120 SCF ubiquitin ligase, 97.7 6.4E-06 1.4E-10 79.2 -0.5 156 387-543 210-374 (419)
46 PF13855 LRR_8: Leucine rich r 97.7 6.2E-05 1.3E-09 56.5 4.8 23 775-797 36-59 (61)
47 PRK08118 topology modulation p 97.7 1.7E-05 3.8E-10 73.7 2.2 51 171-222 2-57 (167)
48 TIGR02928 orc1/cdc6 family rep 97.7 0.00018 3.9E-09 77.5 10.1 81 144-226 16-100 (365)
49 TIGR00767 rho transcription te 97.7 5.5E-05 1.2E-09 78.3 5.7 56 169-225 167-224 (415)
50 COG4886 Leucine-rich repeat (L 97.6 4.5E-05 9.7E-10 83.2 4.5 172 641-821 112-288 (394)
51 PF13855 LRR_8: Leucine rich r 97.5 0.00016 3.5E-09 54.3 4.6 57 645-703 1-59 (61)
52 KOG3665 ZYG-1-like serine/thre 97.5 4.5E-05 9.7E-10 86.8 2.0 157 354-518 120-284 (699)
53 PLN03150 hypothetical protein; 97.4 0.00033 7.1E-09 80.2 8.6 88 388-477 419-507 (623)
54 PF13191 AAA_16: AAA ATPase do 97.4 0.0002 4.4E-09 68.6 5.5 50 145-197 2-51 (185)
55 PLN03150 hypothetical protein; 97.4 0.00033 7.2E-09 80.2 7.1 89 623-711 420-508 (623)
56 KOG1909 Ran GTPase-activating 97.3 6.7E-06 1.5E-10 81.2 -5.8 61 689-750 237-307 (382)
57 PF05496 RuvB_N: Holliday junc 97.3 0.00015 3.2E-09 68.6 2.9 56 142-200 23-78 (233)
58 cd00009 AAA The AAA+ (ATPases 97.1 0.0011 2.5E-08 60.6 6.9 59 146-212 1-59 (151)
59 KOG1947 Leucine rich repeat pr 97.1 7.3E-05 1.6E-09 84.4 -1.4 34 387-420 188-223 (482)
60 PF13401 AAA_22: AAA domain; P 97.1 0.0008 1.7E-08 60.2 5.4 78 169-247 3-83 (131)
61 PF12799 LRR_4: Leucine Rich r 97.0 0.0012 2.6E-08 45.2 4.4 41 387-429 1-41 (44)
62 KOG1947 Leucine rich repeat pr 97.0 0.00023 5E-09 80.3 1.3 42 481-522 241-282 (482)
63 TIGR03015 pepcterm_ATPase puta 96.9 0.0036 7.9E-08 64.1 9.4 72 169-245 42-113 (269)
64 KOG1859 Leucine-rich repeat pr 96.9 5.3E-05 1.2E-09 81.9 -4.6 103 713-823 184-292 (1096)
65 PF01637 Arch_ATPase: Archaeal 96.9 0.00075 1.6E-08 67.6 3.6 44 145-194 1-44 (234)
66 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0011 2.3E-08 68.3 4.4 52 144-195 52-103 (361)
67 KOG2982 Uncharacterized conser 96.8 0.0023 4.9E-08 62.2 5.9 59 433-492 70-130 (418)
68 PF12799 LRR_4: Leucine Rich r 96.8 0.0015 3.2E-08 44.8 3.3 37 412-450 2-39 (44)
69 KOG2028 ATPase related to the 96.8 0.0015 3.2E-08 65.2 4.5 48 168-219 160-211 (554)
70 PRK07261 topology modulation p 96.8 0.0025 5.3E-08 59.7 5.8 35 172-206 2-37 (171)
71 PTZ00112 origin recognition co 96.8 0.0061 1.3E-07 69.0 9.5 86 143-229 755-845 (1164)
72 COG1474 CDC6 Cdc6-related prot 96.7 0.01 2.3E-07 62.5 10.2 99 145-247 19-118 (366)
73 TIGR02903 spore_lon_C ATP-depe 96.7 0.028 6.1E-07 64.1 14.4 61 143-209 154-217 (615)
74 TIGR00635 ruvB Holliday juncti 96.7 0.0012 2.7E-08 68.9 3.3 50 143-193 4-53 (305)
75 PF13207 AAA_17: AAA domain; P 96.6 0.0016 3.4E-08 57.3 2.9 22 172-193 1-22 (121)
76 PRK00080 ruvB Holliday junctio 96.5 0.0018 4E-08 68.1 3.4 51 142-193 24-74 (328)
77 PRK13342 recombination factor 96.5 0.0038 8.3E-08 67.9 5.6 45 143-193 12-59 (413)
78 PRK06696 uridine kinase; Valid 96.4 0.0043 9.4E-08 61.1 5.0 44 147-193 2-45 (223)
79 KOG1859 Leucine-rich repeat pr 96.3 2.4E-05 5.2E-10 84.5 -11.8 100 387-494 187-290 (1096)
80 COG2256 MGS1 ATPase related to 96.3 0.007 1.5E-07 61.9 5.8 45 143-192 24-70 (436)
81 KOG3665 ZYG-1-like serine/thre 96.2 0.0023 5.1E-08 73.1 2.5 127 387-518 122-259 (699)
82 COG2255 RuvB Holliday junction 96.2 0.0039 8.4E-08 60.5 3.2 51 142-193 25-75 (332)
83 KOG0531 Protein phosphatase 1, 96.2 0.0022 4.8E-08 70.0 1.8 32 765-797 234-265 (414)
84 PTZ00301 uridine kinase; Provi 96.0 0.0083 1.8E-07 57.8 4.7 40 170-211 3-42 (210)
85 PRK07667 uridine kinase; Provi 96.0 0.0087 1.9E-07 57.4 4.8 38 152-193 3-40 (193)
86 KOG2543 Origin recognition com 96.0 0.028 6.1E-07 57.1 8.3 78 142-227 5-82 (438)
87 COG1618 Predicted nucleotide k 95.9 0.007 1.5E-07 53.5 3.1 33 170-203 5-37 (179)
88 PF05729 NACHT: NACHT domain 95.9 0.0094 2E-07 55.8 4.4 55 171-225 1-62 (166)
89 PRK15455 PrkA family serine pr 95.8 0.0066 1.4E-07 65.9 3.5 50 144-193 77-126 (644)
90 PLN03025 replication factor C 95.8 0.015 3.2E-07 61.0 6.1 46 142-193 12-57 (319)
91 KOG1644 U2-associated snRNP A' 95.8 0.024 5.3E-07 52.2 6.5 78 670-750 43-122 (233)
92 KOG1909 Ran GTPase-activating 95.8 0.0051 1.1E-07 61.4 2.2 166 350-520 114-309 (382)
93 KOG0531 Protein phosphatase 1, 95.7 0.002 4.3E-08 70.4 -1.0 153 639-800 89-245 (414)
94 COG1428 Deoxynucleoside kinase 95.6 0.0077 1.7E-07 56.2 2.5 47 170-221 4-50 (216)
95 TIGR00763 lon ATP-dependent pr 95.6 0.028 6.1E-07 66.4 7.8 51 143-193 320-370 (775)
96 COG1223 Predicted ATPase (AAA+ 95.6 0.017 3.6E-07 55.2 4.6 56 140-195 118-176 (368)
97 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.019 4.1E-07 57.0 5.4 55 148-210 22-76 (226)
98 PRK05564 DNA polymerase III su 95.6 0.034 7.5E-07 58.1 7.6 77 143-225 4-85 (313)
99 PF00485 PRK: Phosphoribulokin 95.6 0.0088 1.9E-07 57.5 2.9 22 172-193 1-22 (194)
100 PRK13341 recombination factor 95.5 0.012 2.6E-07 67.7 4.3 45 143-193 28-75 (725)
101 PF13238 AAA_18: AAA domain; P 95.5 0.0089 1.9E-07 53.1 2.7 21 173-193 1-21 (129)
102 PRK00440 rfc replication facto 95.5 0.029 6.4E-07 59.1 7.0 46 142-193 16-61 (319)
103 KOG2004 Mitochondrial ATP-depe 95.5 0.07 1.5E-06 58.8 9.5 51 142-192 410-460 (906)
104 TIGR01242 26Sp45 26S proteasom 95.5 0.011 2.5E-07 63.1 3.8 55 139-193 118-179 (364)
105 PF13173 AAA_14: AAA domain 95.5 0.014 3.1E-07 51.6 3.7 37 171-210 3-39 (128)
106 PRK14963 DNA polymerase III su 95.5 0.012 2.5E-07 65.1 3.8 61 142-207 13-73 (504)
107 KOG0991 Replication factor C, 95.4 0.017 3.6E-07 54.2 3.9 74 142-221 26-99 (333)
108 KOG2739 Leucine-rich acidic nu 95.4 0.008 1.7E-07 57.9 1.9 108 352-469 39-152 (260)
109 PRK05480 uridine/cytidine kina 95.4 0.013 2.9E-07 57.2 3.5 25 169-193 5-29 (209)
110 KOG2739 Leucine-rich acidic nu 95.4 0.0087 1.9E-07 57.6 2.1 112 407-522 39-156 (260)
111 TIGR00235 udk uridine kinase. 95.3 0.013 2.8E-07 57.1 3.2 25 169-193 5-29 (207)
112 PRK04195 replication factor C 95.3 0.03 6.4E-07 62.4 6.4 50 142-193 13-62 (482)
113 PHA02544 44 clamp loader, smal 95.3 0.023 5E-07 59.7 5.3 48 141-193 19-66 (316)
114 PF05621 TniB: Bacterial TniB 95.3 0.16 3.4E-06 51.1 10.6 94 145-243 36-137 (302)
115 KOG1644 U2-associated snRNP A' 95.3 0.036 7.8E-07 51.2 5.5 100 737-840 60-176 (233)
116 TIGR02881 spore_V_K stage V sp 95.2 0.032 6.9E-07 56.6 5.8 50 144-193 7-65 (261)
117 PRK09270 nucleoside triphospha 95.2 0.021 4.6E-07 56.5 4.4 26 168-193 31-56 (229)
118 PHA00729 NTP-binding motif con 95.2 0.025 5.4E-07 54.5 4.6 35 153-193 6-40 (226)
119 COG0572 Udk Uridine kinase [Nu 95.2 0.016 3.4E-07 55.1 3.1 26 168-193 6-31 (218)
120 PRK06547 hypothetical protein; 95.2 0.027 5.8E-07 52.6 4.7 26 168-193 13-38 (172)
121 PRK12402 replication factor C 95.2 0.02 4.3E-07 60.9 4.4 46 142-193 14-59 (337)
122 KOG4579 Leucine-rich repeat (L 95.2 0.0017 3.7E-08 55.5 -3.0 94 407-505 49-144 (177)
123 PRK08233 hypothetical protein; 95.1 0.017 3.6E-07 55.1 3.3 24 170-193 3-26 (182)
124 KOG2982 Uncharacterized conser 95.1 0.0045 9.8E-08 60.2 -0.6 103 644-750 44-155 (418)
125 COG0466 Lon ATP-dependent Lon 95.1 0.017 3.6E-07 63.8 3.5 56 143-200 323-378 (782)
126 PRK03992 proteasome-activating 95.0 0.014 3E-07 62.8 2.6 54 140-193 128-188 (389)
127 PRK05541 adenylylsulfate kinas 95.0 0.028 6.1E-07 53.1 4.3 36 169-206 6-41 (176)
128 cd02019 NK Nucleoside/nucleoti 95.0 0.018 3.9E-07 44.3 2.4 22 172-193 1-22 (69)
129 PRK11889 flhF flagellar biosyn 94.9 0.11 2.3E-06 54.3 8.4 25 169-193 240-264 (436)
130 cd01878 HflX HflX subfamily. 94.9 0.04 8.7E-07 53.6 5.2 25 169-193 40-64 (204)
131 PRK14961 DNA polymerase III su 94.8 0.036 7.7E-07 59.1 5.1 47 142-193 15-61 (363)
132 PRK14962 DNA polymerase III su 94.8 0.031 6.8E-07 61.2 4.5 47 142-193 13-59 (472)
133 CHL00095 clpC Clp protease ATP 94.7 0.029 6.3E-07 66.7 4.4 45 143-193 179-223 (821)
134 PRK13531 regulatory ATPase Rav 94.6 0.04 8.7E-07 59.2 4.8 41 145-193 22-62 (498)
135 PRK04040 adenylate kinase; Pro 94.6 0.027 5.9E-07 53.5 3.0 23 171-193 3-25 (188)
136 TIGR03345 VI_ClpV1 type VI sec 94.5 0.037 7.9E-07 65.6 4.5 45 143-193 187-231 (852)
137 TIGR03499 FlhF flagellar biosy 94.5 0.11 2.4E-06 53.0 7.5 26 169-194 193-218 (282)
138 PRK06762 hypothetical protein; 94.4 0.03 6.5E-07 52.3 3.0 23 171-193 3-25 (166)
139 cd02024 NRK1 Nicotinamide ribo 94.4 0.024 5.2E-07 53.4 2.3 22 172-193 1-22 (187)
140 PRK14949 DNA polymerase III su 94.4 0.11 2.3E-06 60.2 7.7 48 142-194 15-62 (944)
141 PRK06893 DNA replication initi 94.4 0.075 1.6E-06 52.5 5.9 38 170-209 39-76 (229)
142 CHL00181 cbbX CbbX; Provisiona 94.4 0.078 1.7E-06 54.2 6.1 50 144-193 24-82 (287)
143 TIGR02639 ClpA ATP-dependent C 94.4 0.041 8.9E-07 64.6 4.6 45 143-193 182-226 (731)
144 TIGR02237 recomb_radB DNA repa 94.4 0.073 1.6E-06 52.0 5.7 48 169-219 11-58 (209)
145 PF01078 Mg_chelatase: Magnesi 94.4 0.067 1.5E-06 50.6 5.0 43 142-192 2-44 (206)
146 TIGR00554 panK_bact pantothena 94.3 0.065 1.4E-06 54.3 5.2 25 168-192 60-84 (290)
147 PRK08727 hypothetical protein; 94.3 0.077 1.7E-06 52.6 5.7 38 171-210 42-79 (233)
148 TIGR01360 aden_kin_iso1 adenyl 94.3 0.034 7.4E-07 53.3 3.1 24 169-192 2-25 (188)
149 cd02023 UMPK Uridine monophosp 94.3 0.027 5.9E-07 54.4 2.3 22 172-193 1-22 (198)
150 PRK08903 DnaA regulatory inact 94.2 0.075 1.6E-06 52.7 5.5 25 169-193 41-65 (227)
151 cd02025 PanK Pantothenate kina 94.2 0.027 5.9E-07 55.1 2.2 22 172-193 1-22 (220)
152 PRK10865 protein disaggregatio 94.2 0.047 1E-06 64.9 4.6 45 143-193 178-222 (857)
153 PRK14957 DNA polymerase III su 94.2 0.055 1.2E-06 60.1 4.7 46 142-192 15-60 (546)
154 PRK08084 DNA replication initi 94.2 0.09 2E-06 52.2 5.9 40 169-210 44-83 (235)
155 PRK03839 putative kinase; Prov 94.1 0.035 7.6E-07 52.7 2.8 22 172-193 2-23 (180)
156 PRK14960 DNA polymerase III su 94.1 0.056 1.2E-06 60.3 4.6 47 142-193 14-60 (702)
157 PRK12323 DNA polymerase III su 94.1 0.11 2.4E-06 57.9 6.9 47 142-193 15-61 (700)
158 PF00308 Bac_DnaA: Bacterial d 94.1 0.16 3.4E-06 49.7 7.4 49 142-193 8-57 (219)
159 PRK10787 DNA-binding ATP-depen 94.1 0.067 1.5E-06 62.6 5.5 51 142-192 321-371 (784)
160 PRK07003 DNA polymerase III su 94.1 0.12 2.6E-06 58.6 7.1 47 142-193 15-61 (830)
161 PRK05896 DNA polymerase III su 94.1 0.059 1.3E-06 59.9 4.7 47 142-193 15-61 (605)
162 PRK14956 DNA polymerase III su 94.1 0.06 1.3E-06 58.2 4.6 46 142-193 17-63 (484)
163 smart00382 AAA ATPases associa 94.1 0.057 1.2E-06 48.7 4.0 23 171-193 3-25 (148)
164 KOG2123 Uncharacterized conser 94.0 0.0058 1.3E-07 58.9 -2.7 99 387-489 19-123 (388)
165 COG1936 Predicted nucleotide k 94.0 0.04 8.7E-07 49.7 2.7 20 172-191 2-21 (180)
166 PF13671 AAA_33: AAA domain; P 94.0 0.043 9.3E-07 49.8 3.0 21 172-192 1-21 (143)
167 PF06309 Torsin: Torsin; Inte 94.0 0.11 2.3E-06 44.7 5.1 48 145-193 27-76 (127)
168 PRK10536 hypothetical protein; 94.0 0.25 5.4E-06 48.6 8.2 54 142-203 54-107 (262)
169 COG3640 CooC CO dehydrogenase 93.9 0.045 9.7E-07 51.9 2.9 21 172-192 2-22 (255)
170 PF03205 MobB: Molybdopterin g 93.9 0.08 1.7E-06 47.4 4.4 39 171-210 1-39 (140)
171 PRK00625 shikimate kinase; Pro 93.9 0.04 8.7E-07 51.4 2.6 22 172-193 2-23 (173)
172 KOG1532 GTPase XAB1, interacts 93.9 0.05 1.1E-06 52.5 3.2 27 168-194 17-43 (366)
173 TIGR00150 HI0065_YjeE ATPase, 93.8 0.096 2.1E-06 46.0 4.7 25 170-194 22-46 (133)
174 PRK00889 adenylylsulfate kinas 93.8 0.053 1.1E-06 51.2 3.3 25 169-193 3-27 (175)
175 PRK05439 pantothenate kinase; 93.8 0.083 1.8E-06 54.0 4.9 25 168-192 84-108 (311)
176 TIGR00390 hslU ATP-dependent p 93.8 0.16 3.5E-06 53.6 7.0 51 143-193 12-70 (441)
177 PF00910 RNA_helicase: RNA hel 93.8 0.035 7.6E-07 47.2 1.9 21 173-193 1-21 (107)
178 KOG2123 Uncharacterized conser 93.8 0.0039 8.4E-08 60.0 -4.3 85 433-523 18-102 (388)
179 cd02028 UMPK_like Uridine mono 93.7 0.041 8.9E-07 51.9 2.4 22 172-193 1-22 (179)
180 PF07726 AAA_3: ATPase family 93.7 0.033 7.2E-07 47.9 1.5 27 173-201 2-28 (131)
181 COG2019 AdkA Archaeal adenylat 93.6 0.059 1.3E-06 48.1 3.0 23 170-192 4-26 (189)
182 PF08298 AAA_PrkA: PrkA AAA do 93.6 0.085 1.8E-06 54.0 4.5 51 143-193 61-111 (358)
183 PTZ00454 26S protease regulato 93.6 0.072 1.6E-06 57.0 4.2 54 139-193 141-202 (398)
184 PRK05642 DNA replication initi 93.6 0.16 3.5E-06 50.3 6.4 37 170-208 45-81 (234)
185 PRK14955 DNA polymerase III su 93.6 0.072 1.6E-06 57.6 4.2 47 142-193 15-61 (397)
186 TIGR03689 pup_AAA proteasome A 93.6 0.12 2.5E-06 56.9 5.8 54 140-193 179-239 (512)
187 PF00004 AAA: ATPase family as 93.6 0.052 1.1E-06 48.3 2.7 22 173-194 1-22 (132)
188 cd01123 Rad51_DMC1_radA Rad51_ 93.5 0.14 3E-06 51.2 5.9 51 169-219 18-72 (235)
189 PRK14958 DNA polymerase III su 93.5 0.18 4E-06 56.0 7.3 47 142-193 15-61 (509)
190 PTZ00361 26 proteosome regulat 93.5 0.062 1.4E-06 58.0 3.5 52 142-193 182-240 (438)
191 PRK12377 putative replication 93.5 0.082 1.8E-06 52.4 4.1 38 170-209 101-138 (248)
192 TIGR02030 BchI-ChlI magnesium 93.4 0.095 2.1E-06 54.6 4.7 44 143-192 4-47 (337)
193 PF03193 DUF258: Protein of un 93.4 0.12 2.6E-06 47.0 4.7 37 149-194 23-59 (161)
194 PRK10751 molybdopterin-guanine 93.4 0.078 1.7E-06 49.0 3.6 25 169-193 5-29 (173)
195 cd01133 F1-ATPase_beta F1 ATP 93.4 0.081 1.8E-06 52.8 3.9 53 169-223 68-122 (274)
196 PRK03846 adenylylsulfate kinas 93.4 0.072 1.6E-06 51.4 3.5 24 169-192 23-46 (198)
197 TIGR03263 guanyl_kin guanylate 93.4 0.06 1.3E-06 51.1 3.0 23 171-193 2-24 (180)
198 COG1222 RPT1 ATP-dependent 26S 93.4 0.09 2E-06 53.2 4.1 53 141-193 149-208 (406)
199 PRK06217 hypothetical protein; 93.3 0.056 1.2E-06 51.4 2.6 24 171-194 2-25 (183)
200 PF05673 DUF815: Protein of un 93.3 0.08 1.7E-06 51.3 3.6 78 139-222 23-102 (249)
201 PRK00131 aroK shikimate kinase 93.3 0.065 1.4E-06 50.6 3.1 24 170-193 4-27 (175)
202 TIGR03346 chaperone_ClpB ATP-d 93.3 0.083 1.8E-06 63.1 4.5 45 143-193 173-217 (852)
203 PRK10463 hydrogenase nickel in 93.3 0.15 3.2E-06 51.4 5.5 26 168-193 102-127 (290)
204 COG1100 GTPase SAR1 and relate 93.3 0.058 1.3E-06 53.2 2.7 23 171-193 6-28 (219)
205 PRK05201 hslU ATP-dependent pr 93.3 0.2 4.4E-06 52.9 6.7 51 143-193 15-73 (443)
206 cd02020 CMPK Cytidine monophos 93.2 0.055 1.2E-06 49.3 2.4 22 172-193 1-22 (147)
207 TIGR00602 rad24 checkpoint pro 93.2 0.11 2.3E-06 58.9 4.9 54 139-193 80-133 (637)
208 TIGR02880 cbbX_cfxQ probable R 93.2 0.16 3.4E-06 52.0 5.9 49 145-193 24-81 (284)
209 PRK14964 DNA polymerase III su 93.2 0.087 1.9E-06 57.6 4.1 46 142-192 12-57 (491)
210 PRK09361 radB DNA repair and r 93.2 0.15 3.3E-06 50.4 5.7 47 169-218 22-68 (225)
211 TIGR00176 mobB molybdopterin-g 93.2 0.075 1.6E-06 48.6 3.1 34 172-206 1-34 (155)
212 TIGR02322 phosphon_PhnN phosph 93.2 0.066 1.4E-06 50.7 2.9 23 171-193 2-24 (179)
213 PRK08691 DNA polymerase III su 93.2 0.096 2.1E-06 59.1 4.5 47 142-193 15-61 (709)
214 PF07728 AAA_5: AAA domain (dy 93.2 0.15 3.2E-06 46.0 5.0 41 173-219 2-43 (139)
215 PRK13695 putative NTPase; Prov 93.2 0.076 1.6E-06 50.0 3.2 34 172-206 2-35 (174)
216 CHL00081 chlI Mg-protoporyphyr 93.1 0.087 1.9E-06 54.8 3.8 46 142-193 16-61 (350)
217 PF00448 SRP54: SRP54-type pro 93.1 0.18 4E-06 48.1 5.8 55 171-228 2-58 (196)
218 TIGR01287 nifH nitrogenase iro 93.1 0.06 1.3E-06 55.2 2.6 23 171-193 1-23 (275)
219 PRK13768 GTPase; Provisional 93.1 0.071 1.5E-06 53.5 3.1 23 171-193 3-25 (253)
220 TIGR00764 lon_rel lon-related 93.1 0.18 3.8E-06 57.5 6.4 76 142-227 17-92 (608)
221 PRK05703 flhF flagellar biosyn 93.1 0.3 6.4E-06 53.0 7.9 24 170-193 221-244 (424)
222 PF08477 Miro: Miro-like prote 93.1 0.074 1.6E-06 46.3 2.8 22 173-194 2-23 (119)
223 PRK13949 shikimate kinase; Pro 93.0 0.067 1.5E-06 49.9 2.6 22 172-193 3-24 (169)
224 PRK13236 nitrogenase reductase 93.0 0.079 1.7E-06 54.7 3.3 26 167-192 3-28 (296)
225 TIGR00073 hypB hydrogenase acc 93.0 0.08 1.7E-06 51.5 3.2 27 167-193 19-45 (207)
226 PRK13947 shikimate kinase; Pro 92.9 0.069 1.5E-06 50.2 2.6 22 172-193 3-24 (171)
227 COG1102 Cmk Cytidylate kinase 92.9 0.12 2.7E-06 45.9 3.8 44 172-228 2-45 (179)
228 PF00158 Sigma54_activat: Sigm 92.9 0.11 2.3E-06 48.3 3.7 45 145-193 1-45 (168)
229 PF03308 ArgK: ArgK protein; 92.8 0.17 3.7E-06 49.4 5.0 39 151-193 14-52 (266)
230 TIGR01359 UMP_CMP_kin_fam UMP- 92.8 0.066 1.4E-06 51.0 2.3 21 172-192 1-21 (183)
231 PF02562 PhoH: PhoH-like prote 92.8 0.13 2.8E-06 49.1 4.1 54 146-207 3-56 (205)
232 cd01983 Fer4_NifH The Fer4_Nif 92.8 0.074 1.6E-06 44.2 2.4 22 172-193 1-22 (99)
233 PF01926 MMR_HSR1: 50S ribosom 92.7 0.092 2E-06 45.5 2.9 21 173-193 2-22 (116)
234 PRK00300 gmk guanylate kinase; 92.7 0.094 2E-06 51.0 3.2 25 169-193 4-28 (205)
235 PRK14969 DNA polymerase III su 92.6 0.32 6.9E-06 54.5 7.6 47 142-193 15-61 (527)
236 PRK14951 DNA polymerase III su 92.6 0.14 3E-06 57.8 4.8 46 142-192 15-60 (618)
237 PRK09087 hypothetical protein; 92.6 0.19 4E-06 49.4 5.2 24 170-193 44-67 (226)
238 PRK07952 DNA replication prote 92.6 0.17 3.6E-06 50.1 4.8 52 151-208 84-135 (244)
239 PRK06620 hypothetical protein; 92.6 0.25 5.4E-06 48.1 6.0 50 141-193 15-67 (214)
240 cd02021 GntK Gluconate kinase 92.6 0.079 1.7E-06 48.5 2.4 22 172-193 1-22 (150)
241 cd00464 SK Shikimate kinase (S 92.6 0.085 1.9E-06 48.5 2.6 21 173-193 2-22 (154)
242 PRK11034 clpA ATP-dependent Cl 92.6 0.12 2.7E-06 60.0 4.4 45 143-193 186-230 (758)
243 PLN02318 phosphoribulokinase/u 92.5 0.14 3.1E-06 56.2 4.6 25 169-193 64-88 (656)
244 PF00142 Fer4_NifH: 4Fe-4S iro 92.5 0.1 2.2E-06 50.9 3.2 40 171-212 1-40 (273)
245 COG0194 Gmk Guanylate kinase [ 92.5 0.14 3E-06 47.0 3.8 25 170-194 4-28 (191)
246 PLN02348 phosphoribulokinase 92.5 0.098 2.1E-06 54.8 3.1 26 168-193 47-72 (395)
247 PRK10078 ribose 1,5-bisphospho 92.5 0.098 2.1E-06 49.9 3.0 23 171-193 3-25 (186)
248 PRK12608 transcription termina 92.4 0.36 7.8E-06 50.4 7.1 71 151-228 119-192 (380)
249 cd00820 PEPCK_HprK Phosphoenol 92.4 0.12 2.5E-06 43.3 2.9 22 170-191 15-36 (107)
250 KOG4579 Leucine-rich repeat (L 92.4 0.016 3.4E-07 49.8 -2.3 80 718-800 29-113 (177)
251 PRK06645 DNA polymerase III su 92.4 0.15 3.2E-06 56.3 4.5 47 142-193 20-66 (507)
252 cd02117 NifH_like This family 92.4 0.093 2E-06 51.3 2.7 22 171-192 1-22 (212)
253 PRK05057 aroK shikimate kinase 92.4 0.1 2.2E-06 48.8 2.9 24 170-193 4-27 (172)
254 PRK12339 2-phosphoglycerate ki 92.4 0.11 2.5E-06 49.5 3.2 24 170-193 3-26 (197)
255 cd03114 ArgK-like The function 92.4 0.087 1.9E-06 47.8 2.3 22 172-193 1-22 (148)
256 PRK07994 DNA polymerase III su 92.4 0.16 3.4E-06 57.5 4.8 47 142-193 15-61 (647)
257 PRK12724 flagellar biosynthesi 92.4 0.23 4.9E-06 52.7 5.6 25 169-193 222-246 (432)
258 PF13306 LRR_5: Leucine rich r 92.3 0.62 1.3E-05 41.1 7.8 76 668-749 11-89 (129)
259 TIGR02397 dnaX_nterm DNA polym 92.3 0.18 3.8E-06 54.1 5.1 47 142-193 13-59 (355)
260 TIGR00064 ftsY signal recognit 92.3 0.18 3.9E-06 51.0 4.8 26 168-193 70-95 (272)
261 PF01583 APS_kinase: Adenylyls 92.3 0.2 4.4E-06 45.3 4.5 34 171-206 3-36 (156)
262 COG0003 ArsA Predicted ATPase 92.3 0.22 4.8E-06 51.3 5.4 48 170-219 2-49 (322)
263 PF04665 Pox_A32: Poxvirus A32 92.3 0.15 3.2E-06 49.8 3.9 37 170-208 13-49 (241)
264 COG0237 CoaE Dephospho-CoA kin 92.3 0.11 2.4E-06 49.5 3.0 23 170-192 2-24 (201)
265 cd00071 GMPK Guanosine monopho 92.3 0.095 2.1E-06 46.9 2.4 22 172-193 1-22 (137)
266 TIGR02902 spore_lonB ATP-depen 92.3 0.18 3.9E-06 56.6 5.1 46 142-193 64-109 (531)
267 PRK14954 DNA polymerase III su 92.3 0.16 3.5E-06 57.5 4.7 47 142-193 15-61 (620)
268 cd04139 RalA_RalB RalA/RalB su 92.3 0.1 2.3E-06 48.5 2.8 22 172-193 2-23 (164)
269 PF00005 ABC_tran: ABC transpo 92.2 0.11 2.4E-06 46.6 2.9 23 171-193 12-34 (137)
270 PRK14970 DNA polymerase III su 92.2 0.16 3.4E-06 54.7 4.5 47 142-193 16-62 (367)
271 cd00227 CPT Chloramphenicol (C 92.2 0.11 2.3E-06 49.1 2.8 23 171-193 3-25 (175)
272 PRK13765 ATP-dependent proteas 92.2 0.24 5.1E-06 56.3 6.0 76 142-227 30-105 (637)
273 PRK14493 putative bifunctional 92.2 0.11 2.3E-06 52.5 3.0 24 171-194 2-25 (274)
274 COG1763 MobB Molybdopterin-gua 92.2 0.096 2.1E-06 47.6 2.4 29 170-198 2-30 (161)
275 PRK14952 DNA polymerase III su 92.2 0.17 3.7E-06 56.8 4.8 47 142-193 12-58 (584)
276 cd01120 RecA-like_NTPases RecA 92.2 0.14 3E-06 47.6 3.6 38 172-211 1-38 (165)
277 COG1703 ArgK Putative periplas 92.2 0.21 4.6E-06 49.5 4.8 65 152-220 37-101 (323)
278 PRK13230 nitrogenase reductase 92.2 0.1 2.2E-06 53.5 2.9 23 171-193 2-24 (279)
279 KOG3864 Uncharacterized conser 92.2 0.016 3.6E-07 53.4 -2.6 80 718-799 103-188 (221)
280 PRK13975 thymidylate kinase; P 92.2 0.11 2.4E-06 50.1 3.0 23 171-193 3-25 (196)
281 cd01393 recA_like RecA is a b 92.2 0.24 5.2E-06 49.0 5.4 49 169-219 18-72 (226)
282 cd01858 NGP_1 NGP-1. Autoanti 92.1 0.24 5.1E-06 45.7 5.0 44 147-193 82-125 (157)
283 PRK14738 gmk guanylate kinase; 92.1 0.13 2.9E-06 49.8 3.4 24 169-192 12-35 (206)
284 KOG0727 26S proteasome regulat 92.1 0.24 5.2E-06 47.2 4.8 55 139-193 151-212 (408)
285 PRK09435 membrane ATPase/prote 92.1 0.22 4.8E-06 51.6 5.1 38 152-193 42-79 (332)
286 COG1124 DppF ABC-type dipeptid 92.0 0.12 2.5E-06 49.6 2.8 24 169-192 32-55 (252)
287 TIGR01313 therm_gnt_kin carboh 92.0 0.093 2E-06 48.8 2.1 21 173-193 1-21 (163)
288 cd01394 radB RadB. The archaea 92.0 0.3 6.6E-06 48.0 5.8 43 169-213 18-60 (218)
289 PRK09111 DNA polymerase III su 91.9 0.18 3.9E-06 56.9 4.7 47 142-193 23-69 (598)
290 TIGR00750 lao LAO/AO transport 91.9 0.18 4E-06 52.1 4.4 26 168-193 32-57 (300)
291 PRK13407 bchI magnesium chelat 91.9 0.16 3.5E-06 52.7 4.0 45 142-192 7-51 (334)
292 cd02022 DPCK Dephospho-coenzym 91.9 0.1 2.3E-06 49.3 2.3 21 172-192 1-21 (179)
293 PRK13946 shikimate kinase; Pro 91.9 0.12 2.5E-06 49.2 2.7 25 169-193 9-33 (184)
294 PRK14722 flhF flagellar biosyn 91.8 0.45 9.7E-06 50.1 7.1 25 169-193 136-160 (374)
295 TIGR02640 gas_vesic_GvpN gas v 91.8 0.43 9.2E-06 48.3 6.9 57 149-218 8-64 (262)
296 PF10662 PduV-EutP: Ethanolami 91.8 0.15 3.2E-06 45.2 3.0 23 171-193 2-24 (143)
297 PRK13232 nifH nitrogenase redu 91.8 0.12 2.5E-06 52.9 2.8 23 171-193 2-24 (273)
298 cd01862 Rab7 Rab7 subfamily. 91.8 0.13 2.7E-06 48.4 2.9 22 172-193 2-23 (172)
299 KOG0738 AAA+-type ATPase [Post 91.7 0.25 5.4E-06 50.6 4.8 56 137-192 206-267 (491)
300 COG0467 RAD55 RecA-superfamily 91.7 0.22 4.7E-06 50.5 4.6 43 168-212 21-63 (260)
301 PRK14530 adenylate kinase; Pro 91.7 0.13 2.8E-06 50.4 2.8 21 172-192 5-25 (215)
302 PRK00771 signal recognition pa 91.6 0.52 1.1E-05 51.0 7.5 26 169-194 94-119 (437)
303 PRK08116 hypothetical protein; 91.6 0.13 2.8E-06 52.1 2.8 36 171-208 115-150 (268)
304 PRK10416 signal recognition pa 91.6 0.17 3.7E-06 52.4 3.7 25 169-193 113-137 (318)
305 KOG3347 Predicted nucleotide k 91.6 0.13 2.9E-06 44.9 2.3 24 169-192 6-29 (176)
306 PF13306 LRR_5: Leucine rich r 91.5 1.2 2.6E-05 39.2 8.8 101 641-750 8-112 (129)
307 cd02034 CooC The accessory pro 91.5 0.14 3.1E-06 44.0 2.6 21 173-193 2-22 (116)
308 PRK12727 flagellar biosynthesi 91.5 0.3 6.6E-06 53.3 5.5 25 169-193 349-373 (559)
309 PRK08099 bifunctional DNA-bind 91.5 0.13 2.9E-06 55.1 2.9 25 168-192 217-241 (399)
310 cd02040 NifH NifH gene encodes 91.5 0.13 2.9E-06 52.5 2.8 23 171-193 2-24 (270)
311 PRK12726 flagellar biosynthesi 91.5 0.58 1.3E-05 48.9 7.3 73 168-244 204-278 (407)
312 cd02027 APSK Adenosine 5'-phos 91.5 0.13 2.7E-06 46.9 2.4 22 172-193 1-22 (149)
313 PRK13948 shikimate kinase; Pro 91.5 0.16 3.5E-06 47.8 3.1 25 169-193 9-33 (182)
314 cd03116 MobB Molybdenum is an 91.5 0.16 3.5E-06 46.5 3.1 23 171-193 2-24 (159)
315 PRK09825 idnK D-gluconate kina 91.4 0.15 3.3E-06 47.9 2.8 23 171-193 4-26 (176)
316 KOG0736 Peroxisome assembly fa 91.4 0.6 1.3E-05 52.4 7.6 58 136-193 665-728 (953)
317 cd01672 TMPK Thymidine monopho 91.4 0.38 8.3E-06 46.4 5.9 22 172-193 2-23 (200)
318 PLN02796 D-glycerate 3-kinase 91.4 0.17 3.7E-06 52.2 3.4 25 169-193 99-123 (347)
319 cd04155 Arl3 Arl3 subfamily. 91.3 0.18 3.8E-06 47.5 3.3 25 169-193 13-37 (173)
320 COG2607 Predicted ATPase (AAA+ 91.3 0.31 6.7E-06 46.5 4.7 53 139-193 56-108 (287)
321 PF00625 Guanylate_kin: Guanyl 91.3 0.21 4.6E-06 47.5 3.8 36 170-207 2-37 (183)
322 COG0563 Adk Adenylate kinase a 91.3 0.15 3.1E-06 47.9 2.6 22 172-193 2-23 (178)
323 PF13521 AAA_28: AAA domain; P 91.3 0.14 2.9E-06 47.7 2.4 20 173-192 2-21 (163)
324 TIGR00362 DnaA chromosomal rep 91.2 0.33 7.2E-06 52.8 5.8 24 170-193 136-159 (405)
325 PRK03731 aroL shikimate kinase 91.2 0.16 3.4E-06 47.8 2.7 22 171-192 3-24 (171)
326 COG1120 FepC ABC-type cobalami 91.2 0.18 3.9E-06 49.7 3.2 25 169-193 27-51 (258)
327 TIGR02173 cyt_kin_arch cytidyl 91.2 0.16 3.6E-06 47.6 2.9 21 172-192 2-22 (171)
328 PF13504 LRR_7: Leucine rich r 91.1 0.12 2.6E-06 27.0 1.1 16 788-804 2-17 (17)
329 PF03029 ATP_bind_1: Conserved 91.1 0.12 2.6E-06 51.1 1.9 20 175-194 1-20 (238)
330 PRK13233 nifH nitrogenase redu 91.1 0.16 3.4E-06 52.1 2.9 22 171-192 3-24 (275)
331 PF06564 YhjQ: YhjQ protein; 91.0 0.17 3.7E-06 49.5 2.9 23 171-193 2-25 (243)
332 PRK07940 DNA polymerase III su 91.0 0.25 5.3E-06 52.9 4.3 51 142-192 4-58 (394)
333 PHA02575 1 deoxynucleoside mon 91.0 0.17 3.8E-06 48.3 2.8 21 172-192 2-22 (227)
334 PRK13235 nifH nitrogenase redu 91.0 0.16 3.4E-06 52.0 2.7 22 171-192 2-23 (274)
335 PRK04182 cytidylate kinase; Pr 91.0 0.17 3.7E-06 48.0 2.8 22 172-193 2-23 (180)
336 PRK10865 protein disaggregatio 91.0 0.34 7.3E-06 57.9 5.8 51 143-193 568-621 (857)
337 TIGR01281 DPOR_bchL light-inde 90.9 0.16 3.5E-06 51.8 2.8 21 172-192 2-22 (268)
338 cd00876 Ras Ras family. The R 90.9 0.17 3.7E-06 46.7 2.7 21 173-193 2-22 (160)
339 PRK14974 cell division protein 90.9 0.2 4.4E-06 52.0 3.4 25 169-193 139-163 (336)
340 TIGR01241 FtsH_fam ATP-depende 90.9 0.2 4.3E-06 56.1 3.7 54 139-193 51-111 (495)
341 KOG0927 Predicted transporter 90.9 0.92 2E-05 48.9 8.1 24 171-194 417-440 (614)
342 PLN02924 thymidylate kinase 90.8 0.59 1.3E-05 45.6 6.4 54 169-223 15-68 (220)
343 COG0468 RecA RecA/RadA recombi 90.8 0.49 1.1E-05 47.5 5.9 51 168-220 58-108 (279)
344 cd00878 Arf_Arl Arf (ADP-ribos 90.8 0.18 3.9E-06 46.6 2.8 21 173-193 2-22 (158)
345 PRK08939 primosomal protein Dn 90.8 0.37 8E-06 49.7 5.2 59 147-209 135-193 (306)
346 PRK05342 clpX ATP-dependent pr 90.8 0.19 4E-06 54.1 3.1 50 143-192 71-130 (412)
347 PRK08356 hypothetical protein; 90.8 0.23 4.9E-06 47.8 3.5 20 171-190 6-25 (195)
348 cd04113 Rab4 Rab4 subfamily. 90.8 0.18 4E-06 46.6 2.8 22 172-193 2-23 (161)
349 PF03266 NTPase_1: NTPase; In 90.7 0.18 3.8E-06 46.8 2.6 21 173-193 2-22 (168)
350 TIGR02016 BchX chlorophyllide 90.7 0.17 3.8E-06 52.0 2.8 23 171-193 1-23 (296)
351 cd03115 SRP The signal recogni 90.7 0.19 4.2E-06 47.2 2.9 23 171-193 1-23 (173)
352 TIGR01243 CDC48 AAA family ATP 90.7 0.24 5.3E-06 58.4 4.3 53 140-193 175-235 (733)
353 COG3638 ABC-type phosphate/pho 90.6 0.23 5E-06 47.4 3.2 24 169-192 29-52 (258)
354 smart00173 RAS Ras subfamily o 90.6 0.19 4.1E-06 46.7 2.8 22 172-193 2-23 (164)
355 cd04119 RJL RJL (RabJ-Like) su 90.6 0.19 4.2E-06 46.8 2.8 22 172-193 2-23 (168)
356 PLN02200 adenylate kinase fami 90.6 0.22 4.7E-06 49.3 3.2 24 169-192 42-65 (234)
357 smart00175 RAB Rab subfamily o 90.6 0.2 4.2E-06 46.6 2.9 22 172-193 2-23 (164)
358 cd03229 ABC_Class3 This class 90.6 0.2 4.4E-06 47.3 2.9 25 169-193 25-49 (178)
359 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.6 0.19 4.2E-06 49.4 2.9 24 170-193 30-53 (218)
360 PRK04301 radA DNA repair and r 90.6 0.44 9.4E-06 49.9 5.6 56 169-225 101-160 (317)
361 PLN03046 D-glycerate 3-kinase; 90.5 0.25 5.4E-06 52.0 3.6 24 169-192 211-234 (460)
362 cd03297 ABC_ModC_molybdenum_tr 90.5 0.22 4.7E-06 48.8 3.2 24 169-193 23-46 (214)
363 PRK14950 DNA polymerase III su 90.5 0.31 6.6E-06 55.6 4.8 47 142-193 15-61 (585)
364 COG1348 NifH Nitrogenase subun 90.5 0.17 3.8E-06 47.8 2.3 22 171-192 2-23 (278)
365 cd02026 PRK Phosphoribulokinas 90.5 0.17 3.6E-06 51.3 2.4 21 172-192 1-21 (273)
366 TIGR01166 cbiO cobalt transpor 90.5 0.2 4.4E-06 47.9 2.9 24 170-193 18-41 (190)
367 PRK14527 adenylate kinase; Pro 90.5 0.22 4.7E-06 47.7 3.1 25 169-193 5-29 (191)
368 PRK09112 DNA polymerase III su 90.5 0.43 9.4E-06 50.2 5.5 48 141-193 21-68 (351)
369 KOG3864 Uncharacterized conser 90.5 0.035 7.7E-07 51.3 -2.2 63 688-750 120-185 (221)
370 PF00560 LRR_1: Leucine Rich R 90.5 0.16 3.5E-06 28.6 1.3 17 671-688 2-18 (22)
371 TIGR00231 small_GTP small GTP- 90.5 0.2 4.4E-06 45.9 2.9 24 171-194 2-25 (161)
372 PRK13231 nitrogenase reductase 90.5 0.2 4.4E-06 50.9 3.0 25 171-195 3-27 (264)
373 cd00983 recA RecA is a bacter 90.5 0.35 7.5E-06 49.9 4.6 45 169-215 54-98 (325)
374 PLN03187 meiotic recombination 90.5 0.52 1.1E-05 49.2 6.0 59 168-227 124-186 (344)
375 PF00560 LRR_1: Leucine Rich R 90.4 0.13 2.9E-06 28.9 0.9 19 389-408 2-20 (22)
376 cd01888 eIF2_gamma eIF2-gamma 90.4 0.19 4.1E-06 48.7 2.6 20 172-191 2-21 (203)
377 PLN00020 ribulose bisphosphate 90.4 0.2 4.4E-06 51.6 2.9 26 168-193 146-171 (413)
378 PRK14953 DNA polymerase III su 90.4 0.33 7.2E-06 53.6 4.8 47 142-193 15-61 (486)
379 cd03238 ABC_UvrA The excision 90.4 0.21 4.6E-06 46.8 2.8 24 169-192 20-43 (176)
380 cd03225 ABC_cobalt_CbiO_domain 90.4 0.21 4.6E-06 48.8 3.0 25 169-193 26-50 (211)
381 KOG0989 Replication factor C, 90.4 0.32 6.9E-06 48.3 4.0 65 142-212 35-100 (346)
382 PRK06761 hypothetical protein; 90.4 0.38 8.3E-06 48.5 4.7 24 171-194 4-27 (282)
383 cd00154 Rab Rab family. Rab G 90.4 0.21 4.5E-06 45.9 2.8 21 173-193 3-23 (159)
384 PRK14721 flhF flagellar biosyn 90.4 1.1 2.3E-05 48.2 8.3 24 169-192 190-213 (420)
385 PRK00149 dnaA chromosomal repl 90.4 0.52 1.1E-05 52.1 6.3 25 169-193 147-171 (450)
386 PRK09183 transposase/IS protei 90.4 0.2 4.4E-06 50.4 2.8 24 170-193 102-125 (259)
387 PRK07429 phosphoribulokinase; 90.4 0.27 5.9E-06 51.1 3.8 26 168-193 6-31 (327)
388 cd00879 Sar1 Sar1 subfamily. 90.4 0.21 4.5E-06 47.9 2.9 25 169-193 18-42 (190)
389 PRK14490 putative bifunctional 90.3 0.27 5.8E-06 52.6 3.9 25 169-193 4-28 (369)
390 TIGR02528 EutP ethanolamine ut 90.3 0.21 4.6E-06 45.1 2.7 22 172-193 2-23 (142)
391 TIGR00382 clpX endopeptidase C 90.3 0.25 5.4E-06 52.9 3.5 50 142-192 76-138 (413)
392 PRK08181 transposase; Validate 90.3 0.18 4E-06 50.6 2.5 36 171-208 107-142 (269)
393 KOG0744 AAA+-type ATPase [Post 90.3 0.2 4.4E-06 49.8 2.6 39 170-208 177-217 (423)
394 PRK06305 DNA polymerase III su 90.3 0.35 7.7E-06 53.0 4.8 47 142-193 16-62 (451)
395 cd04163 Era Era subfamily. Er 90.3 0.24 5.3E-06 46.0 3.2 24 170-193 3-26 (168)
396 TIGR02236 recomb_radA DNA repa 90.3 0.51 1.1E-05 49.2 5.9 57 169-226 94-154 (310)
397 cd04159 Arl10_like Arl10-like 90.2 0.21 4.5E-06 46.0 2.6 21 173-193 2-22 (159)
398 PRK06835 DNA replication prote 90.2 0.2 4.4E-06 52.0 2.8 36 171-208 184-219 (329)
399 cd02042 ParA ParA and ParB of 90.2 0.2 4.3E-06 42.3 2.3 22 172-193 1-23 (104)
400 COG1126 GlnQ ABC-type polar am 90.2 0.26 5.7E-06 46.4 3.2 27 169-195 27-53 (240)
401 smart00178 SAR Sar1p-like memb 90.2 0.4 8.7E-06 45.6 4.6 37 152-193 4-40 (184)
402 TIGR00960 3a0501s02 Type II (G 90.2 0.22 4.7E-06 48.9 2.9 24 170-193 29-52 (216)
403 cd03222 ABC_RNaseL_inhibitor T 90.2 0.25 5.4E-06 46.3 3.0 25 169-193 24-48 (177)
404 TIGR01425 SRP54_euk signal rec 90.1 0.44 9.6E-06 51.1 5.2 25 169-193 99-123 (429)
405 PLN02165 adenylate isopentenyl 90.1 0.25 5.5E-06 50.7 3.3 25 169-193 42-66 (334)
406 cd01131 PilT Pilus retraction 90.1 0.34 7.4E-06 46.6 4.1 22 171-192 2-23 (198)
407 TIGR01650 PD_CobS cobaltochela 90.1 0.58 1.3E-05 48.0 5.8 48 136-192 39-86 (327)
408 TIGR02012 tigrfam_recA protein 90.1 0.4 8.7E-06 49.3 4.7 45 168-214 53-97 (321)
409 cd01876 YihA_EngB The YihA (En 90.1 0.21 4.5E-06 46.6 2.5 20 173-192 2-21 (170)
410 PRK06647 DNA polymerase III su 90.1 0.37 8.1E-06 54.2 4.9 47 142-193 15-61 (563)
411 COG1116 TauB ABC-type nitrate/ 90.0 0.27 5.7E-06 47.7 3.1 24 169-192 28-51 (248)
412 COG4167 SapF ABC-type antimicr 90.0 0.84 1.8E-05 41.5 6.0 77 169-247 38-133 (267)
413 KOG2227 Pre-initiation complex 90.0 1.7 3.6E-05 46.1 9.0 81 142-225 149-230 (529)
414 PRK14723 flhF flagellar biosyn 90.0 1.6 3.5E-05 50.3 9.8 74 170-245 185-260 (767)
415 cd01864 Rab19 Rab19 subfamily. 90.0 0.29 6.3E-06 45.5 3.4 24 170-193 3-26 (165)
416 cd01860 Rab5_related Rab5-rela 90.0 0.24 5.2E-06 46.0 2.8 22 172-193 3-24 (163)
417 PF02374 ArsA_ATPase: Anion-tr 89.9 0.23 4.9E-06 51.3 2.8 22 171-192 2-23 (305)
418 PF13086 AAA_11: AAA domain; P 89.9 0.44 9.6E-06 47.4 5.0 52 172-223 19-75 (236)
419 cd04124 RabL2 RabL2 subfamily. 89.9 0.24 5.2E-06 45.9 2.8 21 173-193 3-23 (161)
420 cd01898 Obg Obg subfamily. Th 89.9 0.23 5E-06 46.5 2.7 21 173-193 3-23 (170)
421 PRK12723 flagellar biosynthesi 89.9 1 2.2E-05 47.9 7.7 25 169-193 173-197 (388)
422 TIGR00455 apsK adenylylsulfate 89.9 0.29 6.3E-06 46.5 3.4 25 169-193 17-41 (184)
423 PF00071 Ras: Ras family; Int 89.9 0.24 5.2E-06 45.9 2.8 21 173-193 2-22 (162)
424 PRK06921 hypothetical protein; 89.9 0.36 7.9E-06 48.7 4.2 39 169-208 116-154 (266)
425 KOG0734 AAA+-type ATPase conta 89.9 0.42 9.1E-06 51.0 4.6 57 140-196 301-363 (752)
426 PRK08154 anaerobic benzoate ca 89.8 0.4 8.6E-06 49.8 4.6 25 169-193 132-156 (309)
427 cd04138 H_N_K_Ras_like H-Ras/N 89.8 0.24 5.2E-06 45.8 2.8 22 172-193 3-24 (162)
428 cd04153 Arl5_Arl8 Arl5/Arl8 su 89.8 0.44 9.5E-06 44.8 4.6 24 170-193 15-38 (174)
429 cd03269 ABC_putative_ATPase Th 89.8 0.25 5.4E-06 48.2 2.9 25 169-193 25-49 (210)
430 TIGR01618 phage_P_loop phage n 89.8 0.25 5.4E-06 47.8 2.8 23 170-192 12-34 (220)
431 PRK06851 hypothetical protein; 89.8 3.3 7.1E-05 43.6 11.1 37 171-208 215-251 (367)
432 PRK15453 phosphoribulokinase; 89.8 0.29 6.3E-06 48.8 3.3 24 169-192 4-27 (290)
433 PRK06526 transposase; Provisio 89.8 0.22 4.8E-06 49.8 2.5 23 171-193 99-121 (254)
434 cd01892 Miro2 Miro2 subfamily. 89.8 0.31 6.7E-06 45.6 3.4 26 168-193 2-27 (169)
435 PF08423 Rad51: Rad51; InterP 89.7 0.61 1.3E-05 46.8 5.7 56 169-225 37-96 (256)
436 PRK14737 gmk guanylate kinase; 89.7 0.3 6.6E-06 46.3 3.3 25 169-193 3-27 (186)
437 PRK14971 DNA polymerase III su 89.7 0.82 1.8E-05 52.2 7.3 47 142-193 16-62 (614)
438 cd02032 Bchl_like This family 89.7 0.24 5.2E-06 50.5 2.8 22 172-193 2-23 (267)
439 cd03259 ABC_Carb_Solutes_like 89.7 0.26 5.6E-06 48.3 2.9 25 169-193 25-49 (213)
440 PRK00454 engB GTP-binding prot 89.7 0.29 6.3E-06 47.1 3.3 26 168-193 22-47 (196)
441 cd03261 ABC_Org_Solvent_Resist 89.7 0.25 5.4E-06 49.2 2.9 24 170-193 26-49 (235)
442 KOG1969 DNA replication checkp 89.7 0.49 1.1E-05 52.7 5.1 81 142-227 270-378 (877)
443 TIGR02639 ClpA ATP-dependent C 89.7 0.69 1.5E-05 54.5 6.9 63 143-210 454-519 (731)
444 TIGR00101 ureG urease accessor 89.7 0.26 5.7E-06 47.3 2.9 23 171-193 2-24 (199)
445 PRK01184 hypothetical protein; 89.7 0.26 5.7E-06 46.9 2.9 18 171-188 2-19 (184)
446 KOG0733 Nuclear AAA ATPase (VC 89.7 0.39 8.4E-06 52.2 4.3 59 136-194 504-569 (802)
447 PRK14087 dnaA chromosomal repl 89.6 0.83 1.8E-05 50.1 7.0 24 170-193 141-164 (450)
448 cd04123 Rab21 Rab21 subfamily. 89.6 0.26 5.6E-06 45.6 2.8 22 172-193 2-23 (162)
449 PRK06995 flhF flagellar biosyn 89.6 0.57 1.2E-05 51.1 5.6 25 169-193 255-279 (484)
450 PRK13541 cytochrome c biogenes 89.6 0.27 5.7E-06 47.3 2.9 24 170-193 26-49 (195)
451 cd03235 ABC_Metallic_Cations A 89.6 0.25 5.4E-06 48.4 2.8 25 169-193 24-48 (213)
452 COG0714 MoxR-like ATPases [Gen 89.6 0.41 8.9E-06 50.4 4.6 62 145-219 26-87 (329)
453 cd04177 RSR1 RSR1 subgroup. R 89.6 0.26 5.6E-06 46.1 2.8 22 172-193 3-24 (168)
454 cd03260 ABC_PstB_phosphate_tra 89.6 0.26 5.7E-06 48.8 2.9 24 170-193 26-49 (227)
455 PRK07133 DNA polymerase III su 89.6 0.43 9.4E-06 54.5 4.9 47 142-193 17-63 (725)
456 KOG0730 AAA+-type ATPase [Post 89.5 0.8 1.7E-05 50.6 6.6 58 136-193 427-491 (693)
457 TIGR02673 FtsE cell division A 89.5 0.27 5.8E-06 48.2 2.9 24 170-193 28-51 (214)
458 COG4107 PhnK ABC-type phosphon 89.5 0.29 6.3E-06 44.0 2.7 23 170-192 32-54 (258)
459 PRK08451 DNA polymerase III su 89.5 1 2.2E-05 50.0 7.6 47 142-193 13-59 (535)
460 PRK10584 putative ABC transpor 89.5 0.27 5.8E-06 48.8 2.9 25 169-193 35-59 (228)
461 PRK14088 dnaA chromosomal repl 89.5 0.67 1.5E-05 50.7 6.2 24 170-193 130-153 (440)
462 cd03263 ABC_subfamily_A The AB 89.5 0.27 5.9E-06 48.4 2.9 24 170-193 28-51 (220)
463 PF13604 AAA_30: AAA domain; P 89.5 0.49 1.1E-05 45.4 4.6 23 171-193 19-41 (196)
464 cd01130 VirB11-like_ATPase Typ 89.5 0.54 1.2E-05 44.7 4.9 22 171-192 26-47 (186)
465 cd04150 Arf1_5_like Arf1-Arf5- 89.5 0.26 5.6E-06 45.6 2.6 21 172-192 2-22 (159)
466 cd03293 ABC_NrtD_SsuB_transpor 89.5 0.27 5.9E-06 48.4 2.9 24 170-193 30-53 (220)
467 PTZ00088 adenylate kinase 1; P 89.4 0.25 5.5E-06 48.4 2.6 21 172-192 8-28 (229)
468 KOG0735 AAA+-type ATPase [Post 89.4 0.47 1E-05 52.6 4.8 53 170-223 431-485 (952)
469 PRK13185 chlL protochlorophyll 89.4 0.28 6E-06 50.1 3.0 23 171-193 3-25 (270)
470 PRK07764 DNA polymerase III su 89.4 0.38 8.2E-06 56.6 4.4 48 142-194 14-61 (824)
471 cd03237 ABC_RNaseL_inhibitor_d 89.4 0.27 5.9E-06 49.1 2.9 24 170-193 25-48 (246)
472 TIGR03598 GTPase_YsxC ribosome 89.4 0.36 7.7E-06 45.7 3.5 26 168-193 16-41 (179)
473 PF07693 KAP_NTPase: KAP famil 89.4 0.66 1.4E-05 49.0 6.0 78 149-229 2-84 (325)
474 COG4608 AppF ABC-type oligopep 89.3 0.3 6.5E-06 48.0 3.0 24 169-192 38-61 (268)
475 cd04140 ARHI_like ARHI subfami 89.3 0.28 6.2E-06 45.6 2.8 22 172-193 3-24 (165)
476 PRK04841 transcriptional regul 89.3 0.89 1.9E-05 55.9 7.9 52 169-226 31-83 (903)
477 cd01428 ADK Adenylate kinase ( 89.3 0.26 5.6E-06 47.4 2.6 21 173-193 2-22 (194)
478 cd04101 RabL4 RabL4 (Rab-like4 89.3 0.29 6.3E-06 45.4 2.9 21 172-192 2-22 (164)
479 cd04162 Arl9_Arfrp2_like Arl9/ 89.3 0.29 6.3E-06 45.5 2.8 21 173-193 2-22 (164)
480 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 89.2 0.29 6.3E-06 45.6 2.8 23 171-193 3-25 (166)
481 COG0488 Uup ATPase components 89.2 0.85 1.8E-05 50.7 6.7 24 170-193 348-371 (530)
482 COG0410 LivF ABC-type branched 89.2 0.31 6.7E-06 46.5 2.8 28 169-196 28-55 (237)
483 TIGR03018 pepcterm_TyrKin exop 89.2 0.61 1.3E-05 45.3 5.1 43 149-192 12-58 (207)
484 TIGR03864 PQQ_ABC_ATP ABC tran 89.2 0.29 6.3E-06 48.8 2.9 25 169-193 26-50 (236)
485 TIGR00041 DTMP_kinase thymidyl 89.2 0.83 1.8E-05 43.9 6.0 23 171-193 4-26 (195)
486 TIGR02238 recomb_DMC1 meiotic 89.2 0.52 1.1E-05 48.7 4.8 59 168-227 94-156 (313)
487 PRK07471 DNA polymerase III su 89.2 0.65 1.4E-05 49.3 5.6 46 142-192 18-63 (365)
488 cd04160 Arfrp1 Arfrp1 subfamil 89.2 0.28 6E-06 45.8 2.6 20 173-192 2-21 (167)
489 cd03296 ABC_CysA_sulfate_impor 89.2 0.29 6.3E-06 48.9 2.9 24 170-193 28-51 (239)
490 cd03226 ABC_cobalt_CbiO_domain 89.1 0.3 6.4E-06 47.5 2.9 24 170-193 26-49 (205)
491 cd01673 dNK Deoxyribonucleosid 89.1 0.25 5.4E-06 47.5 2.3 22 172-193 1-22 (193)
492 PRK13234 nifH nitrogenase redu 89.1 0.32 7E-06 50.2 3.3 24 169-192 3-26 (295)
493 cd04103 Centaurin_gamma Centau 89.1 0.3 6.5E-06 45.0 2.8 20 172-191 2-21 (158)
494 cd03292 ABC_FtsE_transporter F 89.1 0.3 6.5E-06 47.9 2.9 24 170-193 27-50 (214)
495 COG1245 Predicted ATPase, RNas 89.1 0.3 6.5E-06 51.2 2.9 24 169-192 366-389 (591)
496 cd03256 ABC_PhnC_transporter A 89.1 0.29 6.3E-06 49.0 2.9 25 169-193 26-50 (241)
497 TIGR02315 ABC_phnC phosphonate 89.0 0.29 6.4E-06 49.0 2.9 24 170-193 28-51 (243)
498 TIGR03574 selen_PSTK L-seryl-t 89.0 0.27 5.8E-06 49.5 2.6 21 173-193 2-22 (249)
499 TIGR01184 ntrCD nitrate transp 89.0 0.3 6.6E-06 48.4 2.9 24 170-193 11-34 (230)
500 PRK14965 DNA polymerase III su 89.0 0.5 1.1E-05 53.6 4.9 47 142-193 15-61 (576)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-41 Score=383.66 Aligned_cols=504 Identities=23% Similarity=0.334 Sum_probs=301.9
Q ss_pred hhhHHHHHHHHHhcccccHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhcCCcccCCCCCCccccccccccccccc
Q 003013 2 LEMIQAVLADAEDRQTREKSVKMWLDNLQNLAYDVQDVLDELETEALQRELLLQEPAAADQPSSSANTSKFRKLIPTCCT 81 (857)
Q Consensus 2 l~~i~~~l~~ae~~~~~~~~v~~Wl~~v~~~~~d~edv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (857)
|.+++.+++||+.++.....+..|.+.+++++|++||+++.|..+..+.+....- .......+.. |+.
T Consensus 37 L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l----------~~~~~~~~~~--c~~ 104 (889)
T KOG4658|consen 37 LKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLL----------STRSVERQRL--CLC 104 (889)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----------hhhHHHHHHH--hhh
Confidence 6789999999999999999999999999999999999999999988766432000 0000111121 222
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccccceeecccCCccCCCCCCCCCccccCCeeecchhHHHHHHHHHhc
Q 003013 82 NFSPRSIQFESKMVSKIKGITDRLQDIITTQKGLLDSQIVISVGKSRDVGQRLPTPSLVNEAKVYGREKEKEEIIELLLN 161 (857)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~i~~~L~~ 161 (857)
.++.+.+...|.+++++.++.+.++.+. . +..|... .. .....+..++.+...+.. ||.+.+++++++.|+.
T Consensus 105 ~~~~~~~~~~~~~~~rv~~~l~~ve~l~-~-~~~~~~~--~~---~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 105 GFCSKNVSDSYKYGKRVSKVLREVESLG-S-KGVFEVV--GE---SLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred hhHhHhhhhhHhHHHHHHHHHHHHHHhc-c-ccceecc--cc---cccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 3444444445556666666655555553 1 1112111 11 011222233445555555 9999999999999987
Q ss_pred CCCCCCCCceEEEEeccCCcchHHHHHHHhcccc-hhccCCceEEEEeCCCCCHHHHHHHHHHHccCCCCC-CCCChHHH
Q 003013 162 DDLRADDGFSVISINGMAGVGKTTLAQLVYNDDR-VQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSN-NDDDLNSL 239 (857)
Q Consensus 162 ~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~-~~~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~ 239 (857)
+ +..+||||||||+||||||+.|||+.. ++.+||.++||+||++|+..+||++|+..++..... .....+++
T Consensus 177 d------~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~ 250 (889)
T KOG4658|consen 177 D------DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDEL 250 (889)
T ss_pred C------CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHH
Confidence 6 339999999999999999999999987 999999999999999999999999999999874432 33445789
Q ss_pred HHHHHhhc-----------ccc--ccccCC-------CCccc-------------cc--cccccceeeccccchhhcCC-
Q 003013 240 QVKLKERL-----------EWE--EWIPCG-------AGQEV-------------DE--VFPKLRRLSLHRCDKLQGTL- 283 (857)
Q Consensus 240 ~~~l~~~l-----------~w~--~w~~~~-------~~~~i-------------~~--~~~~L~~l~~~~c~~l~~~l- 283 (857)
+..|.+.| .|+ +|...| .|+++ ++ ...+.+.|..+.||.++...
T Consensus 251 ~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v 330 (889)
T KOG4658|consen 251 ASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKV 330 (889)
T ss_pred HHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhh
Confidence 99999988 774 354211 23444 11 12356677788888886321
Q ss_pred -c------hhcccccchhcccccchhhhccCCCCc--------------cEE-------------------e--------
Q 003013 284 -P------KRLLLLDTLYITSCDQLLMTIQCLPAL--------------SKL-------------------L-------- 315 (857)
Q Consensus 284 -p------~~l~~L~~l~~~~c~~l~~~~~~l~~l--------------~~l-------------------~-------- 315 (857)
| ..++.+++..+..|.|+|+++..++.+ ..+ .
T Consensus 331 ~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~ 410 (889)
T KOG4658|consen 331 GPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE 410 (889)
T ss_pred ccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH
Confidence 1 126667777889999999887544422 000 0
Q ss_pred -ecC----cccccc---------------cCCCCC------------------------------CCceEEec-------
Q 003013 316 -IHG----CKRVVF---------------SGPMDL------------------------------SSLKSVDL------- 338 (857)
Q Consensus 316 -l~~----~~~~~~---------------~~~~~l------------------------------~~L~~l~l------- 338 (857)
+.. |...+. .++.+- .+...-.+
T Consensus 411 ~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~ 490 (889)
T KOG4658|consen 411 ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREM 490 (889)
T ss_pred HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHH
Confidence 000 000000 000000 00000000
Q ss_pred -----------------C------Ccccc----------------eeehhhhhhcCCCCCeEeccCCCC-cccccccccc
Q 003013 339 -----------------V------DIANE----------------VVLAGLFEQDIISLNRLQIKGCPR-LLSLVTEEEH 378 (857)
Q Consensus 339 -----------------~------~~~~~----------------~~~~~~~~~~~~~L~~L~l~~~~~-l~~l~~~~~~ 378 (857)
. ...+. ..++.. ...+.|+.|-+..... +..++..
T Consensus 491 al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~--- 565 (889)
T KOG4658|consen 491 ALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGE--- 565 (889)
T ss_pred HHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHH---
Confidence 0 00000 001111 2223466665555332 2222111
Q ss_pred cCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcC
Q 003013 379 DHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYN 457 (857)
Q Consensus 379 ~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 457 (857)
.+..+ +.|++|+|++|..+..+|.+++.+.+||+|+++++ .+..+| .++++..|.+|++..+..+..+|.....
T Consensus 566 --ff~~m-~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~- 640 (889)
T KOG4658|consen 566 --FFRSL-PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE- 640 (889)
T ss_pred --HHhhC-cceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhh-
Confidence 13445 78888888888888888888888888888888886 566666 4777888888888887766666665555
Q ss_pred CCCCccEEEEecCCCCCC---CCCCCCCCCccEEeccccccccccChhhhccCCCCcc----EEEecCCCCCcccccccC
Q 003013 458 SNSSLESLKIRSCNSLVS---FPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE----SLEIRSCDSLTYIARIQL 530 (857)
Q Consensus 458 ~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~ 530 (857)
+++|++|.+........ +.++..+.+|+.+.+..... .+-..+.. ++.|. .+.+.+|...+.......
T Consensus 641 -L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~--~~~L~~~~~~l~~~~~~~~~~~~~~~~ 715 (889)
T KOG4658|consen 641 -LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLG--MTRLRSLLQSLSIEGCSKRTLISSLGS 715 (889)
T ss_pred -cccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhh--hHHHHHHhHhhhhcccccceeeccccc
Confidence 88888888865321111 12334555555555544322 00000000 12222 333333444444455556
Q ss_pred CCcccEEeeccCCCch
Q 003013 531 PPSLKRLIVSDCCNLR 546 (857)
Q Consensus 531 ~~~L~~L~l~~~~~l~ 546 (857)
..+++.|.+.+|...+
T Consensus 716 l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 716 LGNLEELSILDCGISE 731 (889)
T ss_pred ccCcceEEEEcCCCch
Confidence 6777777777776654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.7e-39 Score=388.32 Aligned_cols=338 Identities=23% Similarity=0.375 Sum_probs=199.6
Q ss_pred CCCCCCCceEEEccCCCC------CCcchhhhCCCC-CCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhh
Q 003013 382 QPELPCRLRFLELSYCQG------LTKLPQALLTLC-SLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAW 454 (857)
Q Consensus 382 i~~l~~~L~~L~L~~~~~------l~~lp~~~~~l~-~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 454 (857)
+.++ .+|+.|.+..+.. ...+|..+..++ +||.|.+.++ .+..+|....+.+|+.|++.++. ++.++..+
T Consensus 554 F~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f~~~~L~~L~L~~s~-l~~L~~~~ 630 (1153)
T PLN03210 554 FKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNFRPENLVKLQMQGSK-LEKLWDGV 630 (1153)
T ss_pred HhcC-ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcCCccCCcEEECcCcc-cccccccc
Confidence 4555 7788887754321 123566666654 5888888876 56777765567888888888866 77787776
Q ss_pred hcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcc
Q 003013 455 MYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSL 534 (857)
Q Consensus 455 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 534 (857)
.. +++|+.|+++++..+..+|.+..+++|+.|++++|..+..+|..+.. +++|+.|++++|..++.++....+++|
T Consensus 631 ~~--l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~--L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 631 HS--LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQY--LNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred cc--CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhc--cCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 55 88888888888877888888888888888888888888888877654 688888888888888877665556677
Q ss_pred cEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhh
Q 003013 535 KRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESL 614 (857)
Q Consensus 535 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 614 (857)
+.|.+++|..++.+ |. .+.+|+.|++.++. ++.++.
T Consensus 707 ~~L~Lsgc~~L~~~-------------------p~---~~~nL~~L~L~~n~-i~~lP~--------------------- 742 (1153)
T PLN03210 707 YRLNLSGCSRLKSF-------------------PD---ISTNISWLDLDETA-IEEFPS--------------------- 742 (1153)
T ss_pred CEEeCCCCCCcccc-------------------cc---ccCCcCeeecCCCc-cccccc---------------------
Confidence 77777776655432 21 22456666665542 221111
Q ss_pred hhccCCCCcceeeccCcCC------cccc-CcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc
Q 003013 615 AERLDNTSLEGIFIYELEN------LKSL-PAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN 687 (857)
Q Consensus 615 ~~~~~~~~L~~l~l~~~~~------l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 687 (857)
.....+|..|.+.++.. +..+ +.....+++|+.|++++|+.+..+|..+..+++|+.|++++|..++.+|.
T Consensus 743 --~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 743 --NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred --cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 11111222222221110 0000 00112234566666666665556665555566666666666666666655
Q ss_pred cCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCC
Q 003013 688 CMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPAS 764 (857)
Q Consensus 688 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~ 764 (857)
.+ ++++|+.|++++|..+..+|. .+.+|+.|+++++.. ..++. .+..+++|+.|++.+ |+++..+|. .+++
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i-~~iP~-si~~l~~L~~L~L~~-C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGI-EEVPW-WIEKFSNLSFLDMNG-CNNLQRVSLNISKLKH 894 (1153)
T ss_pred CC-CccccCEEECCCCCccccccc--cccccCEeECCCCCC-ccChH-HHhcCCCCCEEECCC-CCCcCccCcccccccC
Confidence 44 456666666666655555544 235566666655533 22222 344555555555555 555554443 2344
Q ss_pred CCeEecCCCCCCcc
Q 003013 765 LTELWISFMPDLEC 778 (857)
Q Consensus 765 L~~L~l~~~~~l~~ 778 (857)
|+.+++++|.+++.
T Consensus 895 L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 895 LETVDFSDCGALTE 908 (1153)
T ss_pred CCeeecCCCccccc
Confidence 44445555554443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=2.5e-29 Score=306.08 Aligned_cols=481 Identities=16% Similarity=0.100 Sum_probs=217.5
Q ss_pred CCCCccEEeecCcccccccCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCC
Q 003013 307 CLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELP 386 (857)
Q Consensus 307 ~l~~l~~l~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~ 386 (857)
.+.+|++|+++++..........+++|+.|+++++.-...+|.. +..+++|++|+++++.....+|.. +..+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~------~~~l- 187 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNS------LTNL- 187 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChh------hhhC-
Confidence 45555555555554322222233455555655554322233333 255556666666554432233322 3344
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcCCCCCccEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESL 465 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 465 (857)
++|++|+|++|.....+|..++.+++|++|++++|.....+| .++.+++|++|++++|.....+|..+.. +++|++|
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L 265 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN--LKNLQYL 265 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC--CCCCCEE
Confidence 556666666555444555556666666666666554433444 2455566666666655533345555444 5566666
Q ss_pred EEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccc-cccCCCcccEEeeccCC
Q 003013 466 KIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIA-RIQLPPSLKRLIVSDCC 543 (857)
Q Consensus 466 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~L~~L~l~~~~ 543 (857)
++++|.....+| .+..+++|++|++++|.....+|..+.. +++|+.|+++++.....++ .+...++|+.|.+.++.
T Consensus 266 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred ECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 665554333333 2345556666666655433344444432 4556666665543322221 12233455555554432
Q ss_pred CchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccC-CCchhhHHHHHhhcCchhhhhhcc-CCC
Q 003013 544 NLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRN-GNLPRALKYLVSLCSKLESLAERL-DNT 621 (857)
Q Consensus 544 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~-~~~ 621 (857)
-... +|......++|+.|+++++.-...++.. ...+.+..+.+..+.-...++..+ ...
T Consensus 344 l~~~-------------------~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 404 (968)
T PLN00113 344 FSGE-------------------IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404 (968)
T ss_pred CcCc-------------------CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC
Confidence 1110 1111111234555555544211110000 000000000000000000001000 113
Q ss_pred CcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeec
Q 003013 622 SLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIR 701 (857)
Q Consensus 622 ~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 701 (857)
+|+.+.+.++.--..+|..+..+++|+.|++++|.....++.....+++|+.|++++|.....+|..+ ..++|+.|+++
T Consensus 405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls 483 (968)
T PLN00113 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLS 483 (968)
T ss_pred CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECc
Confidence 44555555443333445555555566666665554433444444445556666666555444444422 33556666666
Q ss_pred CCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCc
Q 003013 702 RCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLE 777 (857)
Q Consensus 702 ~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~ 777 (857)
+|.....+|.. ..+++|+.|++++|.....++. .+..+++|++|+|++ |.-...+|. .+++|+.|++++|.-..
T Consensus 484 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSH-NQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred CCccCCccChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCC-CcccccCChhHhCcccCCEEECCCCcccc
Confidence 55433333332 2345566666666554443332 445556666666665 222222332 34556666666644444
Q ss_pred ccCCCCCCccccCceeccCCCCCCCCCCCCccccccceeecCCc
Q 003013 778 CLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCP 821 (857)
Q Consensus 778 ~l~~~~~~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c~ 821 (857)
.+|.....+++|+.|++++|+....+|..+...++....+.++|
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 55544455666666666666555555554333333333334433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.3e-28 Score=297.58 Aligned_cols=497 Identities=16% Similarity=0.132 Sum_probs=314.3
Q ss_pred ccccceeeccccchhhcCCch----hcccccchhcccccch-hhhccCCCCccEEeecCcccc--cccCCCCCCCceEEe
Q 003013 265 FPKLRRLSLHRCDKLQGTLPK----RLLLLDTLYITSCDQL-LMTIQCLPALSKLLIHGCKRV--VFSGPMDLSSLKSVD 337 (857)
Q Consensus 265 ~~~L~~l~~~~c~~l~~~lp~----~l~~L~~l~~~~c~~l-~~~~~~l~~l~~l~l~~~~~~--~~~~~~~l~~L~~l~ 337 (857)
++.|+.|++..+. +.+.+|. .+..|+.+.+..+.-. ......+++|+.|+++++... ....+..+++|+.|+
T Consensus 92 l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 5667777776653 3334553 3445666666555321 111245677777777776532 122456677777777
Q ss_pred cCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEe
Q 003013 338 LVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMK 417 (857)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 417 (857)
++++.....+|..+ ..+++|++|++++|.....+|.. ++.+ .+|++|+|++|.....+|..++.+++|++|+
T Consensus 171 L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~------l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 171 LGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE------LGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH------HcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 77654333444443 66777888888776543344433 4555 7777777777766556777777777788888
Q ss_pred EcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC-CCCCCCccEEecccccc
Q 003013 418 ILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE-IALPSQLRTVRIQECNA 495 (857)
Q Consensus 418 l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 495 (857)
+++|.....+| .++.+++|++|++++|.....+|..+.. +++|++|++++|.....+|. +..+++|+.|+++++..
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 77775444455 3566777777777777644456666655 77777777777654444553 35677777777777655
Q ss_pred ccccChhhhccCCCCccEEEecCCCCCccccc-ccCCCcccEEeeccCCCchhhccccc----cc-ccCCCCCCccccCC
Q 003013 496 LKSLPEAWMHNSNSSLESLEIRSCDSLTYIAR-IQLPPSLKRLIVSDCCNLRTLMAEQD----IC-SSSRGCTSLTSFSS 569 (857)
Q Consensus 496 l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~----~~-~~~~~~~~l~~~~~ 569 (857)
...+|..+.. +++|+.|++++|.....++. +...++|+.|+++++.-...+..... .. .....+.-...+|.
T Consensus 321 ~~~~~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~ 398 (968)
T PLN00113 321 TGKIPVALTS--LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK 398 (968)
T ss_pred CCcCChhHhc--CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH
Confidence 5555655543 67777777777654333321 23345666666665421111100000 00 00000000001111
Q ss_pred CCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhcc-CCCCcceeeccCcCCccccCcCCCCCCCCC
Q 003013 570 ENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERL-DNTSLEGIFIYELENLKSLPAGLHNLHHLQ 648 (857)
Q Consensus 570 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~ 648 (857)
....+++|+.|++.+|.-.. .++..+ ..+.|+.++++++.-...++..+..+++|+
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~-----------------------~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSG-----------------------ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HHhCCCCCCEEECcCCEeee-----------------------ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 11123456666665552111 111111 235778888888655556677777899999
Q ss_pred eEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEecCCC
Q 003013 649 KISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDLK 727 (857)
Q Consensus 649 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~ 727 (857)
.|++++|.....+|... ..++|+.|++++|.....+|..+..+++|+.|++++|.....+|.. ..+++|+.|++++|.
T Consensus 456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 99999997766666544 4579999999998877788888999999999999999666667765 567899999999998
Q ss_pred CcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCCCC
Q 003013 728 ISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLT 801 (857)
Q Consensus 728 ~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 801 (857)
....++. .+..+++|++|++++ |.-...+|. .+++|+.|++++|+-...+|. ...+..+....+.+++.+-
T Consensus 535 l~~~~p~-~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc 608 (968)
T PLN00113 535 LSGQIPA-SFSEMPVLSQLDLSQ-NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAGNIDLC 608 (968)
T ss_pred ccccCCh-hHhCcccCCEEECCC-CcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcCCcccc
Confidence 8766544 678899999999998 555556666 467899999999876667884 3445566666677777654
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=2.7e-23 Score=252.25 Aligned_cols=353 Identities=22% Similarity=0.366 Sum_probs=262.9
Q ss_pred eehhhhhhcCCCCCeEeccCCC--C---cc-cccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEc
Q 003013 346 VLAGLFEQDIISLNRLQIKGCP--R---LL-SLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKIL 419 (857)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~~~--~---l~-~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~ 419 (857)
.+....|..|.+|+.|.+.... . +. .+|. .+..+|.+|+.|.+.++. ++.+|..+ .+.+|+.|++.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~------~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~ 619 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE------GFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQ 619 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCc------chhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECc
Confidence 3566667889999999886532 1 00 1222 255677889999998864 57888776 46889999998
Q ss_pred CCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC-CCCCCCccEEecccccccc
Q 003013 420 GCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE-IALPSQLRTVRIQECNALK 497 (857)
Q Consensus 420 ~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~ 497 (857)
++ .+..++ .+..+++|+.|+++++..++.+|.. . .+++|+.|++++|..+..+|. +..+++|+.|++++|..+.
T Consensus 620 ~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l-s--~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 620 GS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL-S--MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred Cc-cccccccccccCCCCCEEECCCCCCcCcCCcc-c--cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 87 466655 4667889999999988878888853 3 388999999999888888874 5788899999999998888
Q ss_pred ccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCc
Q 003013 498 SLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATL 577 (857)
Q Consensus 498 ~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L 577 (857)
.+|..+ ++++|+.|++++|..+..++. .+.+|+.|.+.+.. ++ .+|... .+++|
T Consensus 696 ~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~-------------------~lP~~~-~l~~L 749 (1153)
T PLN03210 696 ILPTGI---NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IE-------------------EFPSNL-RLENL 749 (1153)
T ss_pred ccCCcC---CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-cc-------------------cccccc-ccccc
Confidence 888755 368899999999988776553 35677777766532 22 333322 23577
Q ss_pred cEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCC
Q 003013 578 EHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPN 657 (857)
Q Consensus 578 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 657 (857)
++|.+.++.....+.....++... ....++|+.|.+++|..+..+|..++++++|+.|++++|..
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~---------------~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLM---------------TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred ccccccccchhhccccccccchhh---------------hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 777777654322111111111000 11235788999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccc
Q 003013 658 LESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWG 736 (857)
Q Consensus 658 l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~ 736 (857)
++.+|... .+++|+.|++++|..+..+|.. .++|+.|++.++ .++.+|.. ..+++|+.|++++|+.+..++. .
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-~ 888 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-N 888 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CCccChHHHhcCCCCCEEECCCCCCcCccCc-c
Confidence 99999766 6889999999999999888763 478999999987 67778765 5679999999999999988755 5
Q ss_pred cCCCCCccEeEEcCCCCCCCCC
Q 003013 737 SNRFTSLRKLEIWGPCPDLVSP 758 (857)
Q Consensus 737 ~~~l~~L~~L~l~~~~~~l~~~ 758 (857)
+..++.|+.+++++ |.++..+
T Consensus 889 ~~~L~~L~~L~l~~-C~~L~~~ 909 (1153)
T PLN03210 889 ISKLKHLETVDFSD-CGALTEA 909 (1153)
T ss_pred cccccCCCeeecCC-Ccccccc
Confidence 77899999999999 8887654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4e-23 Score=212.21 Aligned_cols=341 Identities=20% Similarity=0.264 Sum_probs=194.9
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccc--cccchhhhcCCCCCccE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNAL--KSLPEAWMYNSNSSLES 464 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l--~~l~~~~~~~~l~~L~~ 464 (857)
..++.|.|.. +.+..+|..++.|.+|++|.+.+|...+...++..++.||.+.+.++. + ..+|..+.. +..|..
T Consensus 32 t~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~-LKnsGiP~diF~--l~dLt~ 107 (1255)
T KOG0444|consen 32 TQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN-LKNSGIPTDIFR--LKDLTI 107 (1255)
T ss_pred hheeEEEech-hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc-cccCCCCchhcc--ccccee
Confidence 5556666655 445666666666666666666666444444455556666666665543 2 235555555 666666
Q ss_pred EEEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccc-cCCCcccEEeeccC
Q 003013 465 LKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARI-QLPPSLKRLIVSDC 542 (857)
Q Consensus 465 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~ 542 (857)
|+|+++ .+++.| .+....++-.|++++ +.+..+|..++.. ++.|-.|++++ +.++.+++. .....|++|.+++-
T Consensus 108 lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin-LtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 108 LDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN-LTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred eecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHh-hHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCC
Confidence 666663 445555 234445566666666 4556666555433 45555666665 344422110 01112222222221
Q ss_pred CCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCC
Q 003013 543 CNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTS 622 (857)
Q Consensus 543 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 622 (857)
+- .. .++..+| .+.+|+.|++++..
T Consensus 184 PL-~h--------------fQLrQLP----smtsL~vLhms~Tq------------------------------------ 208 (1255)
T KOG0444|consen 184 PL-NH--------------FQLRQLP----SMTSLSVLHMSNTQ------------------------------------ 208 (1255)
T ss_pred hh-hH--------------HHHhcCc----cchhhhhhhccccc------------------------------------
Confidence 10 00 0111122 11233333333321
Q ss_pred cceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecC
Q 003013 623 LEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRR 702 (857)
Q Consensus 623 L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 702 (857)
.-+..+|.++..+.+|..++++.+ .+..+|.....+++|+.|+++++ .++.+.-....-.+|++|+++.
T Consensus 209 ---------RTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 209 ---------RTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred ---------chhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc
Confidence 123355666777778888888754 67777777777778888888874 3555555555567788888887
Q ss_pred CCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcc
Q 003013 703 CPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLEC 778 (857)
Q Consensus 703 c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~ 778 (857)
+ .++.+|.. ..++.|+.|.+.+|...-...+.++..+.+|+.+...+ +.++-+|. .++.|+.|.++. +.|-.
T Consensus 278 N-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan--N~LElVPEglcRC~kL~kL~L~~-NrLiT 353 (1255)
T KOG0444|consen 278 N-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN--NKLELVPEGLCRCVKLQKLKLDH-NRLIT 353 (1255)
T ss_pred c-hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc--cccccCchhhhhhHHHHHhcccc-cceee
Confidence 7 56777765 45677777777777655444455777777777777765 45666665 356666666665 56666
Q ss_pred cCCCCCCccccCceeccCCCCCCCCCC
Q 003013 779 LSSIGENLTSLKTLRLSYCRKLTYFSK 805 (857)
Q Consensus 779 l~~~~~~l~~L~~L~l~~c~~l~~ip~ 805 (857)
+|..+.-++-|+.|++..+|+|..-|.
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCccCCCC
Confidence 776666667777777777777665444
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.1e-21 Score=201.66 Aligned_cols=354 Identities=19% Similarity=0.252 Sum_probs=215.3
Q ss_pred hcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCC-CcCC-CC
Q 003013 353 QDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASL-VSFP-EV 430 (857)
Q Consensus 353 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l-~~~~-~~ 430 (857)
..|+.++-|.+.. ..+..+|++ ++.+ .+|++|.++.|. +..+...+..++.||.+.++.|..- ..+| ++
T Consensus 29 ~qMt~~~WLkLnr-t~L~~vPeE------L~~l-qkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNR-TKLEQVPEE------LSRL-QKLEHLSMAHNQ-LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred HHhhheeEEEech-hhhhhChHH------HHHH-hhhhhhhhhhhh-hHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 4455555555554 334444443 3334 555555555543 3444445555666666666554211 1233 35
Q ss_pred CCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC--CCCCCCccEEeccccccccccChhhhccCC
Q 003013 431 ALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE--IALPSQLRTVRIQECNALKSLPEAWMHNSN 508 (857)
Q Consensus 431 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l 508 (857)
..+.-|..|+|+++. +++.|..... -+++-.|+|+++ ++..+|. ..++..|-.|++++ +.+..+|+.+.. +
T Consensus 100 F~l~dLt~lDLShNq-L~EvP~~LE~--AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RR--L 172 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQ-LREVPTNLEY--AKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRR--L 172 (1255)
T ss_pred cccccceeeecchhh-hhhcchhhhh--hcCcEEEEcccC-ccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHH--H
Confidence 556666666666654 5666665544 556666666553 4455552 24455556666666 456666665554 4
Q ss_pred CCccEEEecCCCCCc-ccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCC
Q 003013 509 SSLESLEIRSCDSLT-YIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSN 587 (857)
Q Consensus 509 ~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 587 (857)
..|++|.+++.+-.. .+..+....+|+.|.+++-.. .+..+|.+..-+.+|..++++.
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR------------------Tl~N~Ptsld~l~NL~dvDlS~--- 231 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR------------------TLDNIPTSLDDLHNLRDVDLSE--- 231 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc------------------hhhcCCCchhhhhhhhhccccc---
Confidence 566666666543111 000000112222222222110 0002221111112343333332
Q ss_pred ccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCC
Q 003013 588 LAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLP 667 (857)
Q Consensus 588 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~ 667 (857)
+++..+|.++..+++|+.|+++++ .++.+......
T Consensus 232 --------------------------------------------N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~ 266 (1255)
T KOG0444|consen 232 --------------------------------------------NNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGE 266 (1255)
T ss_pred --------------------------------------------cCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHH
Confidence 677788999999999999999997 67777666666
Q ss_pred CCCcceEeeccccCcccCcccCCCCCCccEEeecCCCC-CcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccE
Q 003013 668 STKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPS-VVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRK 745 (857)
Q Consensus 668 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 745 (857)
..+|++|+++. +.+..+|..+-.++.|+.|++.++.- ..-+|.+ +.+.+|+++...+|. ++-+++ ++..|..|+.
T Consensus 267 W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPE-glcRC~kL~k 343 (1255)
T KOG0444|consen 267 WENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPE-GLCRCVKLQK 343 (1255)
T ss_pred Hhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCch-hhhhhHHHHH
Confidence 77999999999 55899999999999999999988742 3455655 667888888888764 354444 8899999999
Q ss_pred eEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCcee
Q 003013 746 LEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLR 793 (857)
Q Consensus 746 L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 793 (857)
|.+. |+.+..+|. .++.|+.|++...++|.--|.....-++|+--+
T Consensus 344 L~L~--~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYN 392 (1255)
T KOG0444|consen 344 LKLD--HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYN 392 (1255)
T ss_pred hccc--ccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeee
Confidence 9998 588999988 789999999999999987776553334554433
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=6.3e-23 Score=200.39 Aligned_cols=423 Identities=22% Similarity=0.248 Sum_probs=233.0
Q ss_pred chhhhccCCCCccEEeecCccccccc-CCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccc
Q 003013 300 QLLMTIQCLPALSKLLIHGCKRVVFS-GPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEH 378 (857)
Q Consensus 300 ~l~~~~~~l~~l~~l~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 378 (857)
.+|.++..+.++..++.+.+.....+ .......+..++++. +.+..+++++ ..+..+..++..+ .++.++|.+
T Consensus 82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i-~~~~~l~dl~~~~-N~i~slp~~--- 155 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSI-GRLLDLEDLDATN-NQISSLPED--- 155 (565)
T ss_pred hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchH-HHHhhhhhhhccc-cccccCchH---
Confidence 34555555555555555444432222 233333344444433 2233344444 2333344444444 334444443
Q ss_pred cCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcC
Q 003013 379 DHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYN 457 (857)
Q Consensus 379 ~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 457 (857)
+..+ .++..|++.++ .++.+|...-.++.|++|+...| .++.+| +++.+.+|.-|++..+. +..+|+. .
T Consensus 156 ---~~~~-~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef---~ 225 (565)
T KOG0472|consen 156 ---MVNL-SKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNK-IRFLPEF---P 225 (565)
T ss_pred ---HHHH-HHHHHhhcccc-chhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcc-cccCCCC---C
Confidence 2222 55566666664 34555555555777777777665 455554 57777777777777766 6777733 2
Q ss_pred CCCCccEEEEecCCCCCCCCC--CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCccc
Q 003013 458 SNSSLESLKIRSCNSLVSFPE--IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLK 535 (857)
Q Consensus 458 ~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 535 (857)
++..|.+|+++. ..++.+|. ...+++|..|++.+ +.++++|..++. +.+|++|++++ ..++ .+|++|.
T Consensus 226 gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSN-N~is-----~Lp~sLg 295 (565)
T KOG0472|consen 226 GCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICL--LRSLERLDLSN-NDIS-----SLPYSLG 295 (565)
T ss_pred ccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccc-cccccCchHHHH--hhhhhhhcccC-Cccc-----cCCcccc
Confidence 277777777755 34555552 35777888888887 667888887776 67788888887 4444 3444444
Q ss_pred EEeeccC----CCchhhccccccccc------------CCCCCCcc------------ccCCCCCCCCCccEEEEeCCCC
Q 003013 536 RLIVSDC----CNLRTLMAEQDICSS------------SRGCTSLT------------SFSSENDLPATLEHLEVSSCSN 587 (857)
Q Consensus 536 ~L~l~~~----~~l~~~~~~~~~~~~------------~~~~~~l~------------~~~~~~~~~~~L~~L~l~~~~~ 587 (857)
.|.+..+ .-++.+..+-....+ ..+.++-. .||... ...+.+.|++++
T Consensus 296 nlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~-~~i~tkiL~~s~--- 371 (565)
T KOG0472|consen 296 NLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIY-AIITTKILDVSD--- 371 (565)
T ss_pred cceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchh-hhhhhhhhcccc---
Confidence 4432221 112222111000000 00000000 000000 001222222222
Q ss_pred ccccccCCCchhhHHHHHhhcCchhhhhhcc----CCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCC
Q 003013 588 LAFLSRNGNLPRALKYLVSLCSKLESLAERL----DNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPE 663 (857)
Q Consensus 588 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 663 (857)
..+..+|+.+ ...-+...+++. +.+.++|..+..+..+.+.-+..+..+..+|.
T Consensus 372 ---------------------~qlt~VPdEVfea~~~~~Vt~Vnfsk-NqL~elPk~L~~lkelvT~l~lsnn~isfv~~ 429 (565)
T KOG0472|consen 372 ---------------------KQLTLVPDEVFEAAKSEIVTSVNFSK-NQLCELPKRLVELKELVTDLVLSNNKISFVPL 429 (565)
T ss_pred ---------------------cccccCCHHHHHHhhhcceEEEeccc-chHhhhhhhhHHHHHHHHHHHhhcCccccchH
Confidence 1222222211 112244444444 56677777666665555554555555655666
Q ss_pred CCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCc
Q 003013 664 EGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSL 743 (857)
Q Consensus 664 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 743 (857)
.+..+++|..|+++++. +..+|..++.+..|+.|+++.+ ....+|.-.......+..+..+..+..+++.++.++.+|
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred HHHhhhcceeeecccch-hhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 67778888889988744 7888888888888999998887 556666532222222333444445566666567777777
Q ss_pred cEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC
Q 003013 744 RKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 744 ~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 799 (857)
..|++.+ +.+..+|...++|++|++|+++++|-
T Consensus 508 ~tLDL~n-----------------------Ndlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQN-----------------------NDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ceeccCC-----------------------CchhhCChhhccccceeEEEecCCcc
Confidence 7777776 78889998889999999999999964
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=1.1e-21 Score=211.68 Aligned_cols=418 Identities=20% Similarity=0.214 Sum_probs=229.9
Q ss_pred ehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCc
Q 003013 347 LAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVS 426 (857)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 426 (857)
.|-.|.+...+|+.|++++.. +...|.. |..+ .+|+.|+++.+ .+..+|.+...+.+|++|.|.++ .+..
T Consensus 36 ~pl~~~~~~v~L~~l~lsnn~-~~~fp~~------it~l-~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n-~l~~ 105 (1081)
T KOG0618|consen 36 RPLEFVEKRVKLKSLDLSNNQ-ISSFPIQ------ITLL-SHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNN-RLQS 105 (1081)
T ss_pred CchHHhhheeeeEEeeccccc-cccCCch------hhhH-HHHhhcccchh-hHhhCchhhhhhhcchhheeccc-hhhc
Confidence 345555656668888888843 3333322 3444 78888888874 56888888889999999999876 5666
Q ss_pred CC-CCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhc
Q 003013 427 FP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMH 505 (857)
Q Consensus 427 ~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~ 505 (857)
.| .+..+.+|++|+++++. +..+|..+.. +..++.+..+++..+..++... ++.+++.....-..++..+.
T Consensus 106 lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~--lt~~~~~~~s~N~~~~~lg~~~----ik~~~l~~n~l~~~~~~~i~- 177 (1081)
T KOG0618|consen 106 LPASISELKNLQYLDLSFNH-FGPIPLVIEV--LTAEEELAASNNEKIQRLGQTS----IKKLDLRLNVLGGSFLIDIY- 177 (1081)
T ss_pred CchhHHhhhcccccccchhc-cCCCchhHHh--hhHHHHHhhhcchhhhhhcccc----chhhhhhhhhcccchhcchh-
Confidence 66 57778899999999876 7888888776 7778888887764443333322 55555555433334443332
Q ss_pred cCCCCcc-EEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeC
Q 003013 506 NSNSSLE-SLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSS 584 (857)
Q Consensus 506 ~~l~~L~-~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~ 584 (857)
+|+ .|++.+.... .++++.+.+++.+.... ..+..+.... ++++.|....
T Consensus 178 ----~l~~~ldLr~N~~~-------------~~dls~~~~l~~l~c~r---------n~ls~l~~~g---~~l~~L~a~~ 228 (1081)
T KOG0618|consen 178 ----NLTHQLDLRYNEME-------------VLDLSNLANLEVLHCER---------NQLSELEISG---PSLTALYADH 228 (1081)
T ss_pred ----hhheeeecccchhh-------------hhhhhhccchhhhhhhh---------cccceEEecC---cchheeeecc
Confidence 233 3666553211 22333333333332221 1111111111 3455555544
Q ss_pred CCCccccccCCCchhhHHHHHhhcCchhhhhhccC-CCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCC
Q 003013 585 CSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLD-NTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPE 663 (857)
Q Consensus 585 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 663 (857)
|+-.+.. ....|..+..+..+...+..+|+... ..+++.+.... +.+..+|..+....+|+.|.+..| .++.+|.
T Consensus 229 n~l~~~~--~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~ 304 (1081)
T KOG0618|consen 229 NPLTTLD--VHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAYN-ELEYIPP 304 (1081)
T ss_pred Ccceeec--cccccccceeeecchhhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCC
Confidence 4322110 01111111111111122222222111 12333333332 444555555555666666666665 5666776
Q ss_pred CCCCCCCcceEeeccccCcccCcccCC--------------------------CCCCccEEeecCCCCCc-ccCCCCCCC
Q 003013 664 EGLPSTKLTELSIRECENLKALPNCMH--------------------------NLTSLLNLEIRRCPSVV-SFPEDGFPT 716 (857)
Q Consensus 664 ~~~~~~~L~~L~l~~c~~l~~l~~~~~--------------------------~l~~L~~L~l~~c~~l~-~l~~~~~~~ 716 (857)
....+.+|++|++..+ ++..+|..+. .++.|+.|++.++.--. .+|......
T Consensus 305 ~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 6666777777777763 3555554111 12233334444331111 122223346
Q ss_pred CCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCcee
Q 003013 717 NLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLR 793 (857)
Q Consensus 717 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~ 793 (857)
+|+.|++++|.. ..++...+.++..|++|+++| +.+..+|. .++.|++|...+ +.+.++| ....+++|+.++
T Consensus 384 hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 384 HLKVLHLSYNRL-NSFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLD 458 (1081)
T ss_pred ceeeeeeccccc-ccCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEe
Confidence 677777776643 344444566667777777776 46666665 455666666655 5677777 666778888888
Q ss_pred ccCCCCCCCCCC-CCcc-ccccceeecCCcc
Q 003013 794 LSYCRKLTYFSK-EGLP-KSLLRLYINHCPL 822 (857)
Q Consensus 794 l~~c~~l~~ip~-~~l~-~~L~~L~i~~c~~ 822 (857)
++.| +|..+-- ..+| +.|+.|+++|++.
T Consensus 459 lS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 8755 6665433 2566 7888888888864
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=8.4e-20 Score=186.94 Aligned_cols=337 Identities=18% Similarity=0.240 Sum_probs=166.4
Q ss_pred CCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeeccccccccccchhhhcCCC
Q 003013 382 QPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSLPEAWMYNSN 459 (857)
Q Consensus 382 i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l 459 (857)
+..+ ++|+.+++.+| .+..+|...+...+|+.|+|.+| .+..+. ++..++.|++|+|+.+. +.+++..-. ..-
T Consensus 98 f~nl-~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~-is~i~~~sf-p~~ 172 (873)
T KOG4194|consen 98 FYNL-PNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNL-ISEIPKPSF-PAK 172 (873)
T ss_pred HhcC-Ccceeeeeccc-hhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhch-hhcccCCCC-CCC
Confidence 3445 66777777664 45666766666666777777665 344433 24556667777776654 555554322 124
Q ss_pred CCccEEEEecCCCCCCCC--CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEE
Q 003013 460 SSLESLKIRSCNSLVSFP--EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRL 537 (857)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 537 (857)
.++++|+|+++ .++.+. .+..+.+|..|.+++ +.+..+|...+.. +++|+.|++.. +.+. -.+-|
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~-L~~L~~LdLnr-N~ir---------ive~l 239 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR-LPKLESLDLNR-NRIR---------IVEGL 239 (873)
T ss_pred CCceEEeeccc-cccccccccccccchheeeeccc-CcccccCHHHhhh-cchhhhhhccc-ccee---------eehhh
Confidence 56777777664 334333 234555666677766 4566666655432 56666666654 1222 11222
Q ss_pred eeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhc
Q 003013 538 IVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAER 617 (857)
Q Consensus 538 ~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 617 (857)
++.+++.++.+....+.. .+|+.=-+.+|.
T Consensus 240 tFqgL~Sl~nlklqrN~I-------------------~kL~DG~Fy~l~------------------------------- 269 (873)
T KOG4194|consen 240 TFQGLPSLQNLKLQRNDI-------------------SKLDDGAFYGLE------------------------------- 269 (873)
T ss_pred hhcCchhhhhhhhhhcCc-------------------ccccCcceeeec-------------------------------
Confidence 333333332221111000 000000111111
Q ss_pred cCCCCcceeeccCcCCcccc-CcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcc-cCCCCCC
Q 003013 618 LDNTSLEGIFIYELENLKSL-PAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPN-CMHNLTS 694 (857)
Q Consensus 618 ~~~~~L~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~ 694 (857)
+++.|++.. +.+..+ ..++.+++.|+.|+++++ .+..|.. .....++|+.|+++++. +..+++ .+..+.+
T Consensus 270 ----kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 270 ----KMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQ 342 (873)
T ss_pred ----ccceeeccc-chhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccc-cccCChhHHHHHHH
Confidence 111111111 222222 224455666677777665 3444322 33345566666666633 444433 4555666
Q ss_pred ccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccc--cccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEec
Q 003013 695 LLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLE--WGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWI 770 (857)
Q Consensus 695 L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l 770 (857)
|++|.++++ .+..+.+. ..+++|++|++++|.....+.+ ..+..+++|+.|.+.|
T Consensus 343 Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-------------------- 401 (873)
T KOG4194|consen 343 LEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-------------------- 401 (873)
T ss_pred hhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC--------------------
Confidence 666666665 44555443 3346666666666654333211 1244455555555555
Q ss_pred CCCCCCcccCCCC-CCccccCceeccCCCCCCCCCCCCccccccceee
Q 003013 771 SFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYI 817 (857)
Q Consensus 771 ~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i 817 (857)
+++++++... ..+++|+.|++.+++-...-|+..-|-.|++|.+
T Consensus 402 ---Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~ 446 (873)
T KOG4194|consen 402 ---NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVM 446 (873)
T ss_pred ---ceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhh
Confidence 5667766555 6677777777776643322222222335555553
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=1.9e-19 Score=184.44 Aligned_cols=356 Identities=16% Similarity=0.224 Sum_probs=228.7
Q ss_pred CceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCC
Q 003013 332 SLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLC 411 (857)
Q Consensus 332 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~ 411 (857)
.-++|++++. .+..+.-.+|.++++|+.+++.+ +.++.+|.. +....+|+.|+|.+|..-..-...+..++
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f-------~~~sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRF-------GHESGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCCcceeeeecc-chhhhcccc-------cccccceeEEeeeccccccccHHHHHhHh
Confidence 3566888774 45566667779999999999988 456766653 22226789999998754334456778889
Q ss_pred CCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC--CCCCCCccE
Q 003013 412 SLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE--IALPSQLRT 487 (857)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~ 487 (857)
.||.|+|+.| .+..+|. +..-.++++|+|+++. ++.+...-. .++.+|-.|.|+.+ .++.+|. +..+++|+.
T Consensus 150 alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F-~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 150 ALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHF-DSLNSLLTLKLSRN-RITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccc-ccccccccc-cccchheeeecccC-cccccCHHHhhhcchhhh
Confidence 9999999987 6666653 3345689999999877 777765533 34788999999885 5667773 466899999
Q ss_pred EeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCcccc
Q 003013 488 VRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSF 567 (857)
Q Consensus 488 L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 567 (857)
|++.. +.++. -.+.....+++|+.|.+... .+..+... .+.+|.
T Consensus 226 LdLnr-N~iri-ve~ltFqgL~Sl~nlklqrN-~I~kL~DG---------~Fy~l~------------------------ 269 (873)
T KOG4194|consen 226 LDLNR-NRIRI-VEGLTFQGLPSLQNLKLQRN-DISKLDDG---------AFYGLE------------------------ 269 (873)
T ss_pred hhccc-cceee-ehhhhhcCchhhhhhhhhhc-CcccccCc---------ceeeec------------------------
Confidence 99987 44433 33344445788888877762 22211111 112222
Q ss_pred CCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCcccc-CcCCCCCCC
Q 003013 568 SSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSL-PAGLHNLHH 646 (857)
Q Consensus 568 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~l~~ 646 (857)
++++|++... ++..+.. + + -+....|+.|+++. +.+..+ +.+....++
T Consensus 270 --------kme~l~L~~N-~l~~vn~-g-----------~---------lfgLt~L~~L~lS~-NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 270 --------KMEHLNLETN-RLQAVNE-G-----------W---------LFGLTSLEQLDLSY-NAIQRIHIDSWSFTQK 318 (873)
T ss_pred --------ccceeecccc-hhhhhhc-c-----------c---------ccccchhhhhccch-hhhheeecchhhhccc
Confidence 2333333221 0000000 0 0 00112233333333 333333 233455799
Q ss_pred CCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCC----CCCCCCCe
Q 003013 647 LQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPED----GFPTNLKS 720 (857)
Q Consensus 647 L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~----~~~~~L~~ 720 (857)
|+.|+++++ .+.+++++ +..+..|++|+++.+. +..+.+ .+..+++|++|+++++..-..+-+. .-+++|+.
T Consensus 319 L~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 319 LKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ceeEecccc-ccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 999999987 67777765 3457899999999854 555544 5678999999999987543333222 12699999
Q ss_pred EEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCC
Q 003013 721 LKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISF 772 (857)
Q Consensus 721 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~ 772 (857)
|++.+|.. +.++...+.++++|++|++.+ +.+.++.+ .+..|++|.+..
T Consensus 397 L~l~gNql-k~I~krAfsgl~~LE~LdL~~--NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 397 LRLTGNQL-KSIPKRAFSGLEALEHLDLGD--NAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred eeecCcee-eecchhhhccCcccceecCCC--Ccceeecccccccchhhhhhhcc
Confidence 99999864 777788899999999999987 34444433 233777777765
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=5.1e-20 Score=180.21 Aligned_cols=392 Identities=22% Similarity=0.284 Sum_probs=222.2
Q ss_pred CCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCC
Q 003013 357 SLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQ 435 (857)
Q Consensus 357 ~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~ 435 (857)
.+..+.+++.. +..+..+ +..+ ..|.+|++.++ .+..+|.+++.+.++..|+.+++ .+..+| .++.+.+
T Consensus 46 ~l~~lils~N~-l~~l~~d------l~nL-~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~ 115 (565)
T KOG0472|consen 46 DLQKLILSHND-LEVLRED------LKNL-ACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLIS 115 (565)
T ss_pred chhhhhhccCc-hhhccHh------hhcc-cceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhh
Confidence 46667776643 3333222 5556 67778888875 34677888888888888888887 444444 5777888
Q ss_pred cceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCCCccEE
Q 003013 436 LRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESL 514 (857)
Q Consensus 436 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L 514 (857)
|+.|+.+.+. +..+|++++. +..|+.|+..++ .+..+| ...++.+|..+++.+ +.+..+|+.... ++.|++|
T Consensus 116 l~~l~~s~n~-~~el~~~i~~--~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~--m~~L~~l 188 (565)
T KOG0472|consen 116 LVKLDCSSNE-LKELPDSIGR--LLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA--MKRLKHL 188 (565)
T ss_pred hhhhhccccc-eeecCchHHH--Hhhhhhhhcccc-ccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH--HHHHHhc
Confidence 8888888766 7778887776 778888877664 445555 457777788888877 556677776655 5777777
Q ss_pred EecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccC
Q 003013 515 EIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRN 594 (857)
Q Consensus 515 ~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 594 (857)
+... ..++ .+|+.+. .+.+|..|++... ++..++..
T Consensus 189 d~~~-N~L~-----tlP~~lg-------------------------------------~l~~L~~LyL~~N-ki~~lPef 224 (565)
T KOG0472|consen 189 DCNS-NLLE-----TLPPELG-------------------------------------GLESLELLYLRRN-KIRFLPEF 224 (565)
T ss_pred ccch-hhhh-----cCChhhc-------------------------------------chhhhHHHHhhhc-ccccCCCC
Confidence 6544 2333 2233222 1233444444332 22222211
Q ss_pred CCchhhHHHHHhhcCchhhhhhcc--CCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcc
Q 003013 595 GNLPRALKYLVSLCSKLESLAERL--DNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLT 672 (857)
Q Consensus 595 ~~~~~~~~~~~~~~~~l~~l~~~~--~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 672 (857)
+. -..+..+..+-..++.++... ..+++..|++.+ ++++++|..+.-+.+|++|+++++ .+..+|.+.+++ .|+
T Consensus 225 ~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 225 PG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLK 300 (565)
T ss_pred Cc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eee
Confidence 11 122222333333444444332 234566666665 666777766666677777777765 566666666666 666
Q ss_pred eEeeccccCcccC--------------------------------------cc----cCCCCCCccEEeecCCCCCcccC
Q 003013 673 ELSIRECENLKAL--------------------------------------PN----CMHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 673 ~L~l~~c~~l~~l--------------------------------------~~----~~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
.|.+.+++ ++++ |. ....+.+.+.|.+++- .++.+|
T Consensus 301 ~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VP 378 (565)
T KOG0472|consen 301 FLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVP 378 (565)
T ss_pred ehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCC
Confidence 66666644 1110 00 0111233344444332 222222
Q ss_pred CC---------------------------------------------------CCCCCCCeEEecCCCCcccccccccCC
Q 003013 711 ED---------------------------------------------------GFPTNLKSLKVHDLKISKALLEWGSNR 739 (857)
Q Consensus 711 ~~---------------------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~ 739 (857)
.+ ..+++|..|++++|.. ..+|. .+..
T Consensus 379 dEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L-n~LP~-e~~~ 456 (565)
T KOG0472|consen 379 DEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL-NDLPE-EMGS 456 (565)
T ss_pred HHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh-hhcch-hhhh
Confidence 11 1134455555555432 22222 3444
Q ss_pred CCCccEeEEcCCCCCCCCCCCCC---CCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCCCCCCCCC-Cccccccc
Q 003013 740 FTSLRKLEIWGPCPDLVSPPPFP---ASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYFSKE-GLPKSLLR 814 (857)
Q Consensus 740 l~~L~~L~l~~~~~~l~~~~~~~---~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~-~l~~~L~~ 814 (857)
+..|++|+|+. +.+..+|..+ ..++.+-.++ +++..++... ..+.+|.+|++.++ .+..||.. +=..+|++
T Consensus 457 lv~Lq~LnlS~--NrFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 457 LVRLQTLNLSF--NRFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRH 532 (565)
T ss_pred hhhhheecccc--cccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeE
Confidence 55566666664 2444445432 2223332333 6677776653 78899999999887 77777774 43478999
Q ss_pred eeecCCc
Q 003013 815 LYINHCP 821 (857)
Q Consensus 815 L~i~~c~ 821 (857)
|++.|+|
T Consensus 533 LeL~gNp 539 (565)
T KOG0472|consen 533 LELDGNP 539 (565)
T ss_pred EEecCCc
Confidence 9999987
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.70 E-value=2.7e-19 Score=193.43 Aligned_cols=392 Identities=20% Similarity=0.203 Sum_probs=216.8
Q ss_pred ceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCC
Q 003013 333 LKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCS 412 (857)
Q Consensus 333 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~ 412 (857)
|++|+++++. ...+|..+ ..+.+|+.|+++. ..+..+|.. +..+ .+|++|.|..+ .+..+|.++..+++
T Consensus 47 L~~l~lsnn~-~~~fp~~i-t~l~~L~~ln~s~-n~i~~vp~s------~~~~-~~l~~lnL~~n-~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 47 LKSLDLSNNQ-ISSFPIQI-TLLSHLRQLNLSR-NYIRSVPSS------CSNM-RNLQYLNLKNN-RLQSLPASISELKN 115 (1081)
T ss_pred eEEeeccccc-cccCCchh-hhHHHHhhcccch-hhHhhCchh------hhhh-hcchhheeccc-hhhcCchhHHhhhc
Confidence 5666666532 22333333 4455677777766 335555432 3444 77888888764 55778888888888
Q ss_pred CcEEeEcCCCCCCcCCC-CCCCCCcceeeccccccccc-------------------cchhhhcCCCCCccEEEEecCCC
Q 003013 413 LTDMKILGCASLVSFPE-VALPSQLRTVRIQECNALKS-------------------LPEAWMYNSNSSLESLKIRSCNS 472 (857)
Q Consensus 413 L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~-------------------l~~~~~~~~l~~L~~L~l~~~~~ 472 (857)
|++|++++| .+..+|. +..++.+..+..+++..+.. ++.++.. +.+ .|+|+++..
T Consensus 116 l~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~--l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 116 LQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN--LTH--QLDLRYNEM 190 (1081)
T ss_pred ccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh--hhe--eeecccchh
Confidence 888888886 4444443 44455555555554422222 2222221 222 355544332
Q ss_pred CCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccc
Q 003013 473 LVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQ 552 (857)
Q Consensus 473 ~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~ 552 (857)
. ......+.+|+.|.... ..+..+-. .-++|+.|+...|+-. .+.....+.+++.++++.-
T Consensus 191 ~--~~dls~~~~l~~l~c~r-n~ls~l~~-----~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n---------- 251 (1081)
T KOG0618|consen 191 E--VLDLSNLANLEVLHCER-NQLSELEI-----SGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHN---------- 251 (1081)
T ss_pred h--hhhhhhccchhhhhhhh-cccceEEe-----cCcchheeeeccCcce-eeccccccccceeeecchh----------
Confidence 2 22233344444444333 22222111 1245555555554332 2222223334444433321
Q ss_pred cccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhcc-CCCCcceeeccCc
Q 003013 553 DICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERL-DNTSLEGIFIYEL 631 (857)
Q Consensus 553 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~L~~l~l~~~ 631 (857)
.+..+|....-..+|+.+..... .+..++... ...+|+.+....
T Consensus 252 ----------~l~~lp~wi~~~~nle~l~~n~N------------------------~l~~lp~ri~~~~~L~~l~~~~- 296 (1081)
T KOG0618|consen 252 ----------NLSNLPEWIGACANLEALNANHN------------------------RLVALPLRISRITSLVSLSAAY- 296 (1081)
T ss_pred ----------hhhcchHHHHhcccceEecccch------------------------hHHhhHHHHhhhhhHHHHHhhh-
Confidence 00011100001122333332221 111111111 113344444433
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCCCCC--------------------------CCCCcceEeeccccCcccC
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGL--------------------------PSTKLTELSIRECENLKAL 685 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--------------------------~~~~L~~L~l~~c~~l~~l 685 (857)
..++.+|....++.+|++|++..+ ++.++|..+. .++.|+.|.+.++.--...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 567778888888999999999986 5666654211 1234555555554333333
Q ss_pred cccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--C
Q 003013 686 PNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--F 761 (857)
Q Consensus 686 ~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~ 761 (857)
...+.++.+|+.|+++++ .+.++|.. ..++.|++|++++|.. ..++ ..+..+..|++|...+ +.+..+|. .
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL-~~Lp-~tva~~~~L~tL~ahs--N~l~~fPe~~~ 450 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKL-TTLP-DTVANLGRLHTLRAHS--NQLLSFPELAQ 450 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchh-hhhh-HHHHhhhhhHHHhhcC--Cceeechhhhh
Confidence 335788999999999998 68888876 4568899999999865 4444 3567788899888765 67888887 6
Q ss_pred CCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCCCC
Q 003013 762 PASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLT 801 (857)
Q Consensus 762 ~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~ 801 (857)
++.|+.++++. ++|+.+-... ..-++|+.|++++|+.+.
T Consensus 451 l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 451 LPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred cCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc
Confidence 78999999997 7777554222 223899999999998643
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=5.6e-14 Score=158.12 Aligned_cols=116 Identities=28% Similarity=0.340 Sum_probs=66.2
Q ss_pred CCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEec
Q 003013 645 HHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVH 724 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 724 (857)
++|++|++++| .+..+|.. .++|+.|+++++ .+..+|.. .++|+.|++++| .+..+|. .++
T Consensus 342 ~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N-~Lt~LP~--l~s-------- 402 (788)
T PRK15387 342 SGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLPV--LPS-------- 402 (788)
T ss_pred cccceEecCCC-ccCCCCCC---Ccccceehhhcc-ccccCccc---ccccceEEecCC-cccCCCC--ccc--------
Confidence 35667777665 45555542 235666666653 34455532 235556666555 3444443 223
Q ss_pred CCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC
Q 003013 725 DLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 799 (857)
+|+.|++++ +.+..+|..+.+|+.|++++ ++++.+|.....+++|+.|++++|+.
T Consensus 403 -----------------~L~~LdLS~--N~LssIP~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 403 -----------------ELKELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred -----------------CCCEEEccC--CcCCCCCcchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 445555554 23444555555666666666 66778876667788888888888853
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=2e-13 Score=153.65 Aligned_cols=114 Identities=25% Similarity=0.299 Sum_probs=77.8
Q ss_pred CccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCC
Q 003013 694 SLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFM 773 (857)
Q Consensus 694 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~ 773 (857)
+|+.|++++| .++.+|. .+++|+.|++++|.. ..++. ...+|+.|++++ +.+..+|..+++|+.|++++
T Consensus 343 ~Lq~LdLS~N-~Ls~LP~--lp~~L~~L~Ls~N~L-~~LP~----l~~~L~~LdLs~--N~Lt~LP~l~s~L~~LdLS~- 411 (788)
T PRK15387 343 GLQELSVSDN-QLASLPT--LPSELYKLWAYNNRL-TSLPA----LPSGLKELIVSG--NRLTSLPVLPSELKELMVSG- 411 (788)
T ss_pred ccceEecCCC-ccCCCCC--CCcccceehhhcccc-ccCcc----cccccceEEecC--CcccCCCCcccCCCEEEccC-
Confidence 4555555554 3444443 245556666655543 22222 124678888876 46777888888999999999
Q ss_pred CCCcccCCCCCCccccCceeccCCCCCCCCCCC-CccccccceeecCCcc
Q 003013 774 PDLECLSSIGENLTSLKTLRLSYCRKLTYFSKE-GLPKSLLRLYINHCPL 822 (857)
Q Consensus 774 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ip~~-~l~~~L~~L~i~~c~~ 822 (857)
+.++.+|. ...+|+.|++++| +++.+|.. .-.++|+.|+++++|.
T Consensus 412 N~LssIP~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 412 NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CcCCCCCc---chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 57888884 2457899999998 78899874 2236899999999973
No 16
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.33 E-value=4.2e-12 Score=131.90 Aligned_cols=96 Identities=33% Similarity=0.547 Sum_probs=83.2
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHHHHHccC
Q 003013 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAK 227 (857)
Q Consensus 148 ~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~ 227 (857)
||.++++|+++|.... ++.++|+|+||||+||||||++++++..++++||.++|+.+++..+...++++|+.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6889999999998743 489999999999999999999999987799999999999999999999999999999988
Q ss_pred CCCC--CCCChHHHHHHHHhhc
Q 003013 228 DQSN--NDDDLNSLQVKLKERL 247 (857)
Q Consensus 228 ~~~~--~~~~~~~~~~~l~~~l 247 (857)
.... ...+.+..+..+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L 98 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELL 98 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhh
Confidence 7431 4567788899999888
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=6.5e-12 Score=142.75 Aligned_cols=117 Identities=26% Similarity=0.455 Sum_probs=66.4
Q ss_pred CCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccE
Q 003013 385 LPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLES 464 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 464 (857)
+|.+|+.|+|++| .+..+|..+. .+|++|++++| .+..+|. ....+|+.|++++|. +..+|..+ ..+|+.
T Consensus 197 Ip~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l----~s~L~~ 266 (754)
T PRK15370 197 IPEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPA-TLPDTIQEMELSINR-ITELPERL----PSALQS 266 (754)
T ss_pred cccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCCh-hhhccccEEECcCCc-cCcCChhH----hCCCCE
Confidence 3466777777775 4566776543 47777777776 4555553 223567777777765 66666654 245777
Q ss_pred EEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecC
Q 003013 465 LKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 465 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
|++++| .+..+|.. .+++|+.|++++| .+..+|..+. ++|+.|++++
T Consensus 267 L~Ls~N-~L~~LP~~-l~~sL~~L~Ls~N-~Lt~LP~~lp----~sL~~L~Ls~ 313 (754)
T PRK15370 267 LDLFHN-KISCLPEN-LPEELRYLSVYDN-SIRTLPAHLP----SGITHLNVQS 313 (754)
T ss_pred EECcCC-ccCccccc-cCCCCcEEECCCC-ccccCcccch----hhHHHHHhcC
Confidence 777653 44455431 2245666666663 3444443221 2344555444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.2e-11 Score=140.49 Aligned_cols=93 Identities=28% Similarity=0.494 Sum_probs=51.0
Q ss_pred CCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEecc
Q 003013 412 SLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQ 491 (857)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 491 (857)
+...|+++++ .+..+|.. ....|+.|+++++. ++.+|..+ ..+|++|++++| .+..+|. ..+.+|+.|+++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~-Ip~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPAC-IPEQITTLILDNNE-LKSLPENL----QGNIKTLYANSN-QLTSIPA-TLPDTIQEMELS 249 (754)
T ss_pred CceEEEeCCC-CcCcCCcc-cccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCC-ccccCCh-hhhccccEEECc
Confidence 4566777765 45555531 23567777777664 66666643 346777777664 3445543 123456666666
Q ss_pred ccccccccChhhhccCCCCccEEEecC
Q 003013 492 ECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 492 ~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
+|. +..+|..+. .+|+.|++++
T Consensus 250 ~N~-L~~LP~~l~----s~L~~L~Ls~ 271 (754)
T PRK15370 250 INR-ITELPERLP----SALQSLDLFH 271 (754)
T ss_pred CCc-cCcCChhHh----CCCCEEECcC
Confidence 633 445555432 3455555543
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=2e-11 Score=141.09 Aligned_cols=125 Identities=15% Similarity=0.204 Sum_probs=89.9
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCC-CCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCAS-LVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~-l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 463 (857)
...+.+.+.++ .+..++... .+++|+.|-+.++.. +..++. +..++.|+.|++++|..+..+|..++. +-+|+
T Consensus 523 ~~~rr~s~~~~-~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNN-KIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--LVHLR 598 (889)
T ss_pred hheeEEEEecc-chhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--hhhhh
Confidence 45566666654 334455433 344788888888753 455543 566889999999988888999999887 99999
Q ss_pred EEEEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecC
Q 003013 464 SLKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 464 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
+|++++ +.+..+| .+.++..|.+|++.....+..+|..... +++|++|.+..
T Consensus 599 yL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~--L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE--LQSLRVLRLPR 651 (889)
T ss_pred cccccC-CCccccchHHHHHHhhheeccccccccccccchhhh--cccccEEEeec
Confidence 999977 5667777 4578888999998887766666443332 68899998876
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.17 E-value=8e-13 Score=114.68 Aligned_cols=155 Identities=21% Similarity=0.259 Sum_probs=94.8
Q ss_pred CCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEE
Q 003013 644 LHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLK 722 (857)
Q Consensus 644 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~ 722 (857)
+.+...|.++++ .+..+|+.+..+.+|+.|++++ +.++.+|..+..++.|+.|++.-+ .+..+|.+ +.++.|+.|+
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 445555555554 4445555555555555555555 335555555555555555555433 34444444 4455555555
Q ss_pred ecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC
Q 003013 723 VHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 723 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 799 (857)
+.+|+..+...+..+..++.|+-|++++ ++.+.+|+ .+++|+.|.+.. +.+-++|..++.++.|++|+|.++ .
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~d--ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-r 184 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGD--NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-R 184 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcC--CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-e
Confidence 5555554444444555666777777765 45666665 456666666666 788889988889999999999988 6
Q ss_pred CCCCCC
Q 003013 800 LTYFSK 805 (857)
Q Consensus 800 l~~ip~ 805 (857)
++.+|.
T Consensus 185 l~vlpp 190 (264)
T KOG0617|consen 185 LTVLPP 190 (264)
T ss_pred eeecCh
Confidence 666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.04 E-value=9.7e-12 Score=108.04 Aligned_cols=164 Identities=23% Similarity=0.318 Sum_probs=122.0
Q ss_pred CCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchh
Q 003013 326 GPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQ 405 (857)
Q Consensus 326 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~ 405 (857)
+.++++..+.|.+++. .+..+|.++ ..+.+|++|++.+ ..++.+|.. |+++ ++|+.|++.-+ .+..+|.
T Consensus 28 gLf~~s~ITrLtLSHN-Kl~~vppni-a~l~nlevln~~n-nqie~lp~~------issl-~klr~lnvgmn-rl~~lpr 96 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHN-KLTVVPPNI-AELKNLEVLNLSN-NQIEELPTS------ISSL-PKLRILNVGMN-RLNILPR 96 (264)
T ss_pred cccchhhhhhhhcccC-ceeecCCcH-HHhhhhhhhhccc-chhhhcChh------hhhc-hhhhheecchh-hhhcCcc
Confidence 4455555666666663 455566665 7788899999888 557777765 7777 88999998865 4578899
Q ss_pred hhCCCCCCcEEeEcCCCCCC-cCCC-CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC-CCCCC
Q 003013 406 ALLTLCSLTDMKILGCASLV-SFPE-VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP-EIALP 482 (857)
Q Consensus 406 ~~~~l~~L~~L~l~~~~~l~-~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~ 482 (857)
+|+.++.|+.|++.+++.-+ .+|. +..++.|+-|+++++. ++.+|..++. +.+|+.|.++.+.. .++| +++.+
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~--lt~lqil~lrdndl-l~lpkeig~l 172 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGK--LTNLQILSLRDNDL-LSLPKEIGDL 172 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhh--hcceeEEeeccCch-hhCcHHHHHH
Confidence 99999999999998874333 2453 4457888888999877 8889998888 99999999988644 4445 67888
Q ss_pred CCccEEeccccccccccChhhhc
Q 003013 483 SQLRTVRIQECNALKSLPEAWMH 505 (857)
Q Consensus 483 ~~L~~L~l~~~~~l~~lp~~~~~ 505 (857)
..|+.|++.+ +.+..+|+.+..
T Consensus 173 t~lrelhiqg-nrl~vlppel~~ 194 (264)
T KOG0617|consen 173 TRLRELHIQG-NRLTVLPPELAN 194 (264)
T ss_pred HHHHHHhccc-ceeeecChhhhh
Confidence 8888888888 567777776543
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.93 E-value=2.8e-11 Score=120.67 Aligned_cols=262 Identities=15% Similarity=0.195 Sum_probs=139.9
Q ss_pred hhhCCCCCCcEEeEcCCCCCCcCC---CCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCC--CC-
Q 003013 405 QALLTLCSLTDMKILGCASLVSFP---EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSF--PE- 478 (857)
Q Consensus 405 ~~~~~l~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~--~~- 478 (857)
.....++++++|.+.+|..+++-. ....+.+|++|++..|.++++........++++|.+|++++|+.+..- ..
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 334567777777777777665532 123477888888888877776655433355888999999998876651 11
Q ss_pred CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccC
Q 003013 479 IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSS 558 (857)
Q Consensus 479 ~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 558 (857)
...+..++.+...||.....-........+.-+..+++..|..+++.......
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~--------------------------- 290 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIA--------------------------- 290 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHh---------------------------
Confidence 12333455554455543321111111112233444444455444422110000
Q ss_pred CCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccC
Q 003013 559 RGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLP 638 (857)
Q Consensus 559 ~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~ 638 (857)
.....|+.|..++|..+.... +-
T Consensus 291 -------------~~c~~lq~l~~s~~t~~~d~~--------------------------------------------l~ 313 (483)
T KOG4341|consen 291 -------------CGCHALQVLCYSSCTDITDEV--------------------------------------------LW 313 (483)
T ss_pred -------------hhhhHhhhhcccCCCCCchHH--------------------------------------------HH
Confidence 011345555555553322110 00
Q ss_pred cCCCCCCCCCeEEeecCCCCcccCC--CCCCCCCcceEeeccccCcccC--cccCCCCCCccEEeecCCCCCcccC----
Q 003013 639 AGLHNLHHLQKISIADCPNLESFPE--EGLPSTKLTELSIRECENLKAL--PNCMHNLTSLLNLEIRRCPSVVSFP---- 710 (857)
Q Consensus 639 ~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~l~---- 710 (857)
.-..+.++|+.|.++.|..+..... -..+.+.|+.+++..|.....- -.--.+++.|++|+++.|..++...
T Consensus 314 aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 314 ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 0123456777777777766543322 2334567777777776544321 1222467888888888776555431
Q ss_pred -CC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 711 -ED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 711 -~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
.. .....|+.+.+++|+.+.......+..+++|+.+.+.+
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 11 23466777888888776654433455566666666665
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.87 E-value=5.7e-11 Score=118.51 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=39.5
Q ss_pred CCCCCCCeEEeecCCCCccc-----CCCCCCCCCcceEeeccccCcccC-cccCCCCCCccEEeecCCCCCccc
Q 003013 642 HNLHHLQKISIADCPNLESF-----PEEGLPSTKLTELSIRECENLKAL-PNCMHNLTSLLNLEIRRCPSVVSF 709 (857)
Q Consensus 642 ~~l~~L~~L~l~~c~~l~~l-----~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l 709 (857)
.+++.|+.|.+++|..+..- ......+..|+.+.+.+|+.+..- -..+..+++|+.+.+.+|..+..-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE 442 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence 34677777777777655433 223334556777777777655322 123455667777777776655443
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.78 E-value=3e-10 Score=112.45 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=77.1
Q ss_pred EEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchh-hhCCCCCC
Q 003013 335 SVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQ-ALLTLCSL 413 (857)
Q Consensus 335 ~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~-~~~~l~~L 413 (857)
.++|.. +.+..+|.+.|+.+++||.|+|++ ++++.+..+ .+.+| ..|..|-+.++..++.+|+ .|+.+..|
T Consensus 71 eirLdq-N~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~-----AF~GL-~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 71 EIRLDQ-NQISSIPPGAFKTLHRLRRLDLSK-NNISFIAPD-----AFKGL-ASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred EEEecc-CCcccCChhhccchhhhceecccc-cchhhcChH-----hhhhh-HhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 344433 456677888888888888888888 345544322 45666 5555666666566777775 45667777
Q ss_pred cEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCC
Q 003013 414 TDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCN 471 (857)
Q Consensus 414 ~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~ 471 (857)
+-|.+.-| .+..++. +..+++|..|.+.++. ++.++.... ..+..++.+.+..++
T Consensus 143 qrLllNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf-~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 143 QRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTF-QGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhcChh-hhcchhHHHHHHhhhcchhcccchh-hhhhccccc-cchhccchHhhhcCc
Confidence 77777654 3333331 3446677777777755 666665322 236666666666554
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=1.7e-09 Score=114.52 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=18.6
Q ss_pred CCccEEeccccccc----cccChhhhccCCCCccEEEecCC
Q 003013 483 SQLRTVRIQECNAL----KSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 483 ~~L~~L~l~~~~~l----~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
++|+.|++++|... ..++..+. .+++|++|++++|
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~--~~~~L~~L~l~~n 175 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALR--ANRDLKELNLANN 175 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHH--hCCCcCEEECcCC
Confidence 56666666665422 11222222 2467788877775
No 26
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.65 E-value=1.2e-07 Score=98.21 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=85.4
Q ss_pred CCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEe
Q 003013 644 LHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKV 723 (857)
Q Consensus 644 l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l 723 (857)
+.+++.|++++| .++++|. -.++|++|.+++|..++.+|..+ .++|++|.+++|+.+..+ |++|+.|++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEEe
Confidence 456667777766 5666661 12357777777777766666543 256777777777655433 345666666
Q ss_pred cCCCCcccccccccCCC-CCccEeEEcCCCCC-CCCCC-CCCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC-
Q 003013 724 HDLKISKALLEWGSNRF-TSLRKLEIWGPCPD-LVSPP-PFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK- 799 (857)
Q Consensus 724 ~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~-l~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~- 799 (857)
..+.. .. +..+ ++|++|.+.+..+. ...++ ..|++|++|.+.+|..+. +|..+ -.+|+.|+++.+..
T Consensus 120 ~~n~~-~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~L--P~SLk~L~ls~n~~~ 190 (426)
T PRK15386 120 KGSAT-DS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKL--PESLQSITLHIEQKT 190 (426)
T ss_pred CCCCC-cc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccccc--cccCcEEEecccccc
Confidence 54322 11 1122 24666666431111 12222 255677777777766442 33212 14677777765421
Q ss_pred CCCCCCCCccccccceeecCCcch
Q 003013 800 LTYFSKEGLPKSLLRLYINHCPLI 823 (857)
Q Consensus 800 l~~ip~~~l~~~L~~L~i~~c~~l 823 (857)
.-.++...+|+++ .|++.+|-.+
T Consensus 191 sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 191 TWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred cccCccccccccc-Eechhhhccc
Confidence 1124444566677 7777777544
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.63 E-value=1.3e-09 Score=108.08 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCCCceEEEccCCCCCCcch-hhhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCC
Q 003013 385 LPCRLRFLELSYCQGLTKLP-QALLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSS 461 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 461 (857)
||+.-..++|..|. ++.+| .+|+.+++||.|+|++| .++.+.. +..+..|-.|-+.+...++++|.... .++..
T Consensus 65 LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~s 141 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSS 141 (498)
T ss_pred CCCcceEEEeccCC-cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHH
Confidence 67788888888764 56665 46778888888888887 5655542 45577777777777566888887654 34777
Q ss_pred ccEEEEecCCCCCCCC--CCCCCCCccEEeccccccccccCh
Q 003013 462 LESLKIRSCNSLVSFP--EIALPSQLRTVRIQECNALKSLPE 501 (857)
Q Consensus 462 L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~lp~ 501 (857)
|+.|.+.-| .+..+. .+..+++|..|.+.+ +.+..++.
T Consensus 142 lqrLllNan-~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~ 181 (498)
T KOG4237|consen 142 LQRLLLNAN-HINCIRQDALRDLPSLSLLSLYD-NKIQSICK 181 (498)
T ss_pred HHHHhcChh-hhcchhHHHHHHhhhcchhcccc-hhhhhhcc
Confidence 777777543 222222 124455555555555 33444444
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.61 E-value=1.7e-07 Score=97.08 Aligned_cols=137 Identities=27% Similarity=0.365 Sum_probs=101.7
Q ss_pred CCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeE
Q 003013 668 STKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLE 747 (857)
Q Consensus 668 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 747 (857)
+.+++.|++++| .++.+|. -.++|+.|.+.+|..++.+|. .++++|+.|++++|..+..++ ++|+.|+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP-------~sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP-------ESVRSLE 118 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc-------cccceEE
Confidence 468999999999 6888883 235799999999999988885 457899999999997666543 3688888
Q ss_pred EcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCCCCCCCCCCccccccceeecCC
Q 003013 748 IWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHC 820 (857)
Q Consensus 748 l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c 820 (857)
+.+ .....++..|++|+.|.+.+++.....+....--++|++|.+++|..+. +|. .+|.+|+.|+++.+
T Consensus 119 L~~--n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~-~LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKG--SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPE-KLPESLQSITLHIE 187 (426)
T ss_pred eCC--CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Ccc-cccccCcEEEeccc
Confidence 864 5555677788899999986543221111000112689999999997654 553 58999999999775
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.52 E-value=1.8e-08 Score=106.75 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.2
Q ss_pred CCCccEEEEecCC
Q 003013 459 NSSLESLKIRSCN 471 (857)
Q Consensus 459 l~~L~~L~l~~~~ 471 (857)
+++|++|++++|.
T Consensus 80 ~~~L~~L~l~~~~ 92 (319)
T cd00116 80 GCGLQELDLSDNA 92 (319)
T ss_pred cCceeEEEccCCC
Confidence 5556666665543
No 30
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.27 E-value=7.8e-07 Score=91.12 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=47.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCC--CHHHHHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF--DVFGVSKFILN 223 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~--~~~~i~~~i~~ 223 (857)
.-...+|+|.+|+||||||+.|||+...+ +||.++||++++.+ ++.+++++|..
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg 223 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKG 223 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcC
Confidence 44678999999999999999999975544 89999999999998 89999999974
No 31
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.21 E-value=2.1e-06 Score=84.64 Aligned_cols=55 Identities=20% Similarity=0.086 Sum_probs=48.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC--CCHHHHHHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFGVSKFILNS 224 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~--~~~~~i~~~i~~~ 224 (857)
.-..++|.|.+|+|||||++.++++.... +||.++|++++++ +++.+++++|...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~ 71 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGE 71 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccE
Confidence 45789999999999999999999975554 8999999998887 8999999999433
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=1.9e-06 Score=79.59 Aligned_cols=124 Identities=16% Similarity=0.208 Sum_probs=44.8
Q ss_pred CCceEEEccCCCCCCcchhhhC-CCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhh-cCCCCCccE
Q 003013 387 CRLRFLELSYCQGLTKLPQALL-TLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWM-YNSNSSLES 464 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~l~~L~~ 464 (857)
.++++|+|+++. +..+. .++ .+.+|+.|++++| .++.++.+..+++|++|+++++. ++.+++.+. . +++|++
T Consensus 19 ~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~--lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKN--LPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH---TT--E
T ss_pred cccccccccccc-ccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchHHh--CCcCCE
Confidence 567788888763 34443 344 5788899999887 77788878888999999999877 777765442 3 889999
Q ss_pred EEEecCCCCCCCC---CCCCCCCccEEeccccccccccCh--hhhccCCCCccEEEecC
Q 003013 465 LKIRSCNSLVSFP---EIALPSQLRTVRIQECNALKSLPE--AWMHNSNSSLESLEIRS 518 (857)
Q Consensus 465 L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~lp~--~~~~~~l~~L~~L~l~~ 518 (857)
|+++++ .+..+. .+..+++|+.|++.+++-. ..+. .+....+|+|+.|+-..
T Consensus 93 L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCC-cCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 999775 444443 3456788888888886533 2221 11112267777776544
No 33
>PTZ00202 tuzin; Provisional
Probab=98.19 E-value=3e-05 Score=80.01 Aligned_cols=94 Identities=14% Similarity=0.148 Sum_probs=68.2
Q ss_pred ccCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHH
Q 003013 140 VNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
.+...++||+++...+...|...+. .-..++.|.|++|+|||||++.+..... ..++..-+. +...+.+
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHH
Confidence 3456799999999999999965332 2346999999999999999999987432 223333333 7799999
Q ss_pred HHHHHccCCCCCCCCChHHHHHHHHhhc
Q 003013 220 FILNSIAKDQSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l 247 (857)
.|+.+|+... .....++.+.|++.+
T Consensus 328 ~LL~ALGV~p---~~~k~dLLrqIqeaL 352 (550)
T PTZ00202 328 SVVKALGVPN---VEACGDLLDFISEAC 352 (550)
T ss_pred HHHHHcCCCC---cccHHHHHHHHHHHH
Confidence 9999999743 334456666666666
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4e-07 Score=92.11 Aligned_cols=174 Identities=21% Similarity=0.185 Sum_probs=91.9
Q ss_pred CCCCCCeEEeecCCCCcccCC--CCCCCCCcceEeecccc--CcccCcccCCCCCCccEEeecCCCCCcccCCC---CCC
Q 003013 643 NLHHLQKISIADCPNLESFPE--EGLPSTKLTELSIRECE--NLKALPNCMHNLTSLLNLEIRRCPSVVSFPED---GFP 715 (857)
Q Consensus 643 ~l~~L~~L~l~~c~~l~~l~~--~~~~~~~L~~L~l~~c~--~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~---~~~ 715 (857)
++.+|+.+.+.+| .+...+. ....+++++.|+++.+- ++..+..-...+|+|+.|+++.+. +...... ..+
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhh
Confidence 4566666666665 2333332 33446677777776531 112222234567777777777652 2222211 345
Q ss_pred CCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCC--CCCC-CCCCCCeEecCCCCCCcccCC--CCCCccccC
Q 003013 716 TNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLV--SPPP-FPASLTELWISFMPDLECLSS--IGENLTSLK 790 (857)
Q Consensus 716 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~--~~~~-~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~ 790 (857)
++|+.|.++.|.....-..+....+|+|+.|++.++ ..+. ..+. .+..|++|+|++ +++-+.+. ....+|.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N-~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN-EIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc-cccceecchhhhhhHHhhccccC-Ccccccccccccccccchh
Confidence 677777777776543322334556777777777762 2211 1111 466677777777 34444442 226677777
Q ss_pred ceeccCCCCCCCCCC--C------CccccccceeecCCc
Q 003013 791 TLRLSYCRKLTYFSK--E------GLPKSLLRLYINHCP 821 (857)
Q Consensus 791 ~L~l~~c~~l~~ip~--~------~l~~~L~~L~i~~c~ 821 (857)
.|.++.| .+.++.. . ...++|+.|++..++
T Consensus 275 ~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 275 QLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 7777766 4444322 1 123566677666553
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.8e-07 Score=91.01 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCCCCCcEEeEcCCCCCCcCC---CCCCCCCcceeeccccccccccchh-hhcCCCCCccEEEEecC
Q 003013 408 LTLCSLTDMKILGCASLVSFP---EVALPSQLRTVRIQECNALKSLPEA-WMYNSNSSLESLKIRSC 470 (857)
Q Consensus 408 ~~l~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~l~~L~~L~l~~~ 470 (857)
.++.+|+...|+++ .+...+ ....|++++.|+|+.+- +.++... -..+.+++|+.|+++.+
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccc
Confidence 34555555555544 333332 12335555555555432 1111111 11123666666666654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=9.1e-07 Score=84.79 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=43.2
Q ss_pred CCccEEeecCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeE
Q 003013 693 TSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTEL 768 (857)
Q Consensus 693 ~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L 768 (857)
..|++|+++++ .++.+-+. .+.|.++.|++++|.....- .++.+++|++|++++ +.+..+.. .+.++++|
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~---nLa~L~~L~~LDLS~--N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQ---NLAELPQLQLLDLSG--NLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeeh---hhhhcccceEeeccc--chhHhhhhhHhhhcCEeee
Confidence 34455555554 23333222 33455555555555443221 244555555555554 12222211 33444555
Q ss_pred ecCCCCCCcccCCCCCCccccCceeccCC
Q 003013 769 WISFMPDLECLSSIGENLTSLKTLRLSYC 797 (857)
Q Consensus 769 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 797 (857)
.++. +.+++++ +...+.+|..|+++++
T Consensus 358 ~La~-N~iE~LS-GL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 358 KLAQ-NKIETLS-GLRKLYSLVNLDLSSN 384 (490)
T ss_pred ehhh-hhHhhhh-hhHhhhhheecccccc
Confidence 5544 4444444 3344555555555554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=1.6e-06 Score=83.15 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=96.4
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 466 (857)
..|++|+|++| .++.+-.++.-.+.+|.|++++| .+..+..+..+++|+.|+++++. +..+...-.. +-|++.|.
T Consensus 284 q~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~K--LGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNL-LAECVGWHLK--LGNIKTLK 358 (490)
T ss_pred hhhhhcccccc-chhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccch-hHhhhhhHhh--hcCEeeee
Confidence 77889999986 46778888888899999999987 56666668889999999999876 6666555444 88899999
Q ss_pred EecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCC
Q 003013 467 IRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCD 520 (857)
Q Consensus 467 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~ 520 (857)
++++ .+..+..+..+-+|..|++++ +.+..+...-.-+++|.|+++.+.+.+
T Consensus 359 La~N-~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQN-KIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhh-hHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence 9884 567777778888889999888 445555443333457788888777743
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.97 E-value=3.9e-07 Score=95.19 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=20.5
Q ss_pred CCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc
Q 003013 647 LQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN 687 (857)
Q Consensus 647 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~ 687 (857)
|..|+++ |+++..+|..+..+..|++|.|.+++ |++-|.
T Consensus 213 Li~lDfS-cNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 213 LIRLDFS-CNKISYLPVDFRKMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred eeeeecc-cCceeecchhhhhhhhheeeeeccCC-CCCChH
Confidence 4455555 23555555555555556666555544 444443
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.7e-07 Score=85.37 Aligned_cols=178 Identities=21% Similarity=0.267 Sum_probs=105.9
Q ss_pred ceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcc--hhhhCCC
Q 003013 333 LKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKL--PQALLTL 410 (857)
Q Consensus 333 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~l--p~~~~~l 410 (857)
++.+++++......-..++...+.+|+.|.+.+..--..+.. .|..- .+|+.|+|+.|++++.. ...+.+|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~------~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN------TIAKN-SNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH------HHhcc-ccceeeccccccccchhHHHHHHHhh
Confidence 455555543333233445566677777777777431111111 12222 77888888888877643 3456788
Q ss_pred CCCcEEeEcCCCCCCcCCC--C-CCCCCcceeeccccccc---cccchhhhcCCCCCccEEEEecCCCCCC--CCCCCCC
Q 003013 411 CSLTDMKILGCASLVSFPE--V-ALPSQLRTVRIQECNAL---KSLPEAWMYNSNSSLESLKIRSCNSLVS--FPEIALP 482 (857)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~--~-~~l~~L~~L~l~~~~~l---~~l~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~ 482 (857)
+.|..|+++.|......-. + ..-.+|..|+++++... .++.... ..+++|.+|||++|..++. +..+..+
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~--~rcp~l~~LDLSD~v~l~~~~~~~~~kf 337 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLV--RRCPNLVHLDLSDSVMLKNDCFQEFFKF 337 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHH--HhCCceeeeccccccccCchHHHHHHhc
Confidence 8888888888865544321 1 12467888888887421 1222222 3388888888888766654 2245677
Q ss_pred CCccEEeccccccccccChhhh-ccCCCCccEEEecCCCC
Q 003013 483 SQLRTVRIQECNALKSLPEAWM-HNSNSSLESLEIRSCDS 521 (857)
Q Consensus 483 ~~L~~L~l~~~~~l~~lp~~~~-~~~l~~L~~L~l~~c~~ 521 (857)
+.|++|.++.|..+ .|.-+. ....|+|.+|++.+|-.
T Consensus 338 ~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred chheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 88888888888754 222221 12357788888877643
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.85 E-value=1.3e-05 Score=87.51 Aligned_cols=173 Identities=23% Similarity=0.309 Sum_probs=126.4
Q ss_pred CcceeeccCcCCccccCcCCCCCC-CCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 622 SLEGIFIYELENLKSLPAGLHNLH-HLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 622 ~L~~l~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
.+..+.+.+ ..+..++.....+. +|+.|+++++ .+..+|.....+++|+.|+++++. +..+|......++|+.|++
T Consensus 117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec
Confidence 455555554 67777777676664 8999999986 677777677788899999999865 7777776558899999999
Q ss_pred cCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCC---CCCCCCCCCeEecCCCCCC
Q 003013 701 RRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVS---PPPFPASLTELWISFMPDL 776 (857)
Q Consensus 701 ~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~---~~~~~~~L~~L~l~~~~~l 776 (857)
+++ .+..+|.. ..+..|++|.++++....... .+..+.++..+.+.+ +.+.. ....++++++|++++ +.+
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~--n~~~~~~~~~~~l~~l~~L~~s~-n~i 267 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSN--NKLEDLPESIGNLSNLETLDLSN-NQI 267 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCC--ceeeeccchhccccccceecccc-ccc
Confidence 998 67788876 466779999999986433321 456667777777654 33333 333677789999988 678
Q ss_pred cccCCCCCCccccCceeccCCCCCCCCC
Q 003013 777 ECLSSIGENLTSLKTLRLSYCRKLTYFS 804 (857)
Q Consensus 777 ~~l~~~~~~l~~L~~L~l~~c~~l~~ip 804 (857)
++++. ...+.+|+.|+++++......|
T Consensus 268 ~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 268 SSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc-ccccCccCEEeccCccccccch
Confidence 88885 7788899999998875544433
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.80 E-value=6.4e-07 Score=93.61 Aligned_cols=162 Identities=23% Similarity=0.262 Sum_probs=79.2
Q ss_pred CccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC
Q 003013 633 NLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED 712 (857)
Q Consensus 633 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~ 712 (857)
.+..+|..+..|..|+.+.++.+ .+..+|..+..+..|.+|+|+. +.+..+|..+-.| -|+.|-++++ +++.+|..
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sNN-kl~~lp~~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSNN-KLTSLPEE 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEecC-ccccCCcc
Confidence 33444444444444444444433 3444444444444455555544 2244444433322 2444444444 34444443
Q ss_pred -CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCC--CCCeEecCCCCCCcccCCCCCCcccc
Q 003013 713 -GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPA--SLTELWISFMPDLECLSSIGENLTSL 789 (857)
Q Consensus 713 -~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~--~L~~L~l~~~~~l~~l~~~~~~l~~L 789 (857)
+..+.|..|+.+.|..... + ..+..+.+|+.|.+.. +.+..+|+.+. .|..|+++. +++..||....+|..|
T Consensus 162 ig~~~tl~~ld~s~nei~sl-p-sql~~l~slr~l~vrR--n~l~~lp~El~~LpLi~lDfSc-Nkis~iPv~fr~m~~L 236 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSL-P-SQLGYLTSLRDLNVRR--NHLEDLPEELCSLPLIRLDFSC-NKISYLPVDFRKMRHL 236 (722)
T ss_pred cccchhHHHhhhhhhhhhhc-h-HHhhhHHHHHHHHHhh--hhhhhCCHHHhCCceeeeeccc-Cceeecchhhhhhhhh
Confidence 3444455555555443221 1 1344555566666654 34555555222 244555554 6777777666777777
Q ss_pred CceeccCCCCCCCCC
Q 003013 790 KTLRLSYCRKLTYFS 804 (857)
Q Consensus 790 ~~L~l~~c~~l~~ip 804 (857)
+.|.+.+|| |++-|
T Consensus 237 q~l~LenNP-LqSPP 250 (722)
T KOG0532|consen 237 QVLQLENNP-LQSPP 250 (722)
T ss_pred eeeeeccCC-CCCCh
Confidence 777777664 34433
No 42
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.79 E-value=4.4e-05 Score=80.49 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
.+++++.++..+.+...|... +.|-++|++|+||||+|+.+.+.......|+.+.||++++.++..+...
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 345889999999999999643 4678899999999999999998655556788999999999888766554
No 43
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.76 E-value=0.00013 Score=79.49 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=68.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFIL 222 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~ 222 (857)
+.++||+++.+++...|...- .+.....+-|+|..|+||||+++.++++.+.....-.++++......+...+..+|+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 459999999999999985421 112345567999999999999999999643332122344555555567788899999
Q ss_pred HHccCC-CCCCCCChHHHHHHHHhhc
Q 003013 223 NSIAKD-QSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 223 ~~l~~~-~~~~~~~~~~~~~~l~~~l 247 (857)
.++... ......+.+.....+.+.+
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l 133 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYL 133 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence 998763 2212334455555554433
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.74 E-value=4.5e-05 Score=70.56 Aligned_cols=107 Identities=14% Similarity=0.211 Sum_probs=29.5
Q ss_pred hCCCCCCcEEeEcCCCCCCcCCCCC-CCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC-C-CCCC
Q 003013 407 LLTLCSLTDMKILGCASLVSFPEVA-LPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE-I-ALPS 483 (857)
Q Consensus 407 ~~~l~~L~~L~l~~~~~l~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~-~~~~ 483 (857)
+.+..+++.|+|+++ .+..+..++ .+.+|+.|++++|. ++.+... . .+++|+.|+++++ .+..+.+ + ..++
T Consensus 15 ~~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~~l-~--~L~~L~~L~L~~N-~I~~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSNNQ-ITKLEGL-P--GLPRLKTLDLSNN-RISSISEGLDKNLP 88 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccc-ccccccchhhhhcCCCEEECCCCC-CccccCc-c--ChhhhhhcccCCC-CCCccccchHHhCC
Confidence 344556788888876 566666555 46777888888766 6666542 2 2777777777664 4445542 2 2466
Q ss_pred CccEEeccccccccccChhhhccCCCCccEEEecCCC
Q 003013 484 QLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCD 520 (857)
Q Consensus 484 ~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~ 520 (857)
+|++|++++ +.+.++..-..-..+++|+.|++.+++
T Consensus 89 ~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 89 NLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred cCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 777777766 334443332222235667777666644
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=6.4e-06 Score=79.21 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=106.2
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC---CCCCCCCcceeeccccccccccchhhhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP---EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~---~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 463 (857)
.+|+.|.|.+...-..+-..+..-.+|+.|++++|..++... .+..++.|..|++++|...+.....+...--++|.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 677788888776655666777788889999999888777654 24568889999999887655544333333356788
Q ss_pred EEEEecCCCCCCCCC----CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCc--ccccccCCCcccEE
Q 003013 464 SLKIRSCNSLVSFPE----IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLT--YIARIQLPPSLKRL 537 (857)
Q Consensus 464 ~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~--~l~~~~~~~~L~~L 537 (857)
.|++++|...-.... ...+++|.+|++++|..++.--... ...++.|++|.++.|-.+. .+-.+.-.|++..|
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yL 368 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYL 368 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEE
Confidence 888888754332222 2567899999999988775521111 1237889999999886554 22233445788888
Q ss_pred eeccCC
Q 003013 538 IVSDCC 543 (857)
Q Consensus 538 ~l~~~~ 543 (857)
++.+|-
T Consensus 369 dv~g~v 374 (419)
T KOG2120|consen 369 DVFGCV 374 (419)
T ss_pred Eecccc
Confidence 877763
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.70 E-value=6.2e-05 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=10.2
Q ss_pred CCcccCCCC-CCccccCceeccCC
Q 003013 775 DLECLSSIG-ENLTSLKTLRLSYC 797 (857)
Q Consensus 775 ~l~~l~~~~-~~l~~L~~L~l~~c 797 (857)
.++.++... ..+++|++|++++|
T Consensus 36 ~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 36 NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp SESEEETTTTTTSTTESEEEETSS
T ss_pred ccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444333 44444444444444
No 47
>PRK08118 topology modulation protein; Reviewed
Probab=97.70 E-value=1.7e-05 Score=73.68 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=36.6
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchh-ccCCceE----EEEeCCCCCHHHHHHHHH
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQ-RHYEIKA----WTCVSEDFDVFGVSKFIL 222 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~-~~Fd~~~----wv~vs~~~~~~~i~~~i~ 222 (857)
..|.|+|++|.||||||+.+++...+. -+||... |+.++++ +..+++++++
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~-~~~~~~~~~~ 57 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKE-EQITVQNELV 57 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHH-HHHHHHHHHh
Confidence 468999999999999999999975554 5688877 4555443 4444444444
No 48
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.68 E-value=0.00018 Score=77.49 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=58.6
Q ss_pred eeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchh-ccCC---ceEEEEeCCCCCHHHHHH
Q 003013 144 KVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ-RHYE---IKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~-~~Fd---~~~wv~vs~~~~~~~i~~ 219 (857)
.++||+++.++|..+|...- .+.....+-|+|++|+||||+++.++++.... ...+ .++|+......+...+..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 59999999999999986421 12244678999999999999999999853211 1111 235566556567788889
Q ss_pred HHHHHcc
Q 003013 220 FILNSIA 226 (857)
Q Consensus 220 ~i~~~l~ 226 (857)
.|++++.
T Consensus 94 ~i~~~l~ 100 (365)
T TIGR02928 94 ELANQLR 100 (365)
T ss_pred HHHHHHh
Confidence 9999884
No 49
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.68 E-value=5.5e-05 Score=78.32 Aligned_cols=56 Identities=16% Similarity=0.088 Sum_probs=47.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC--CCHHHHHHHHHHHc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFGVSKFILNSI 225 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~--~~~~~i~~~i~~~l 225 (857)
.-..++|+|.+|.|||||++.+++....+ +|+.++||.++++ .++.+++++|...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~V 224 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEV 224 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceE
Confidence 44679999999999999999999964333 7999999999977 79999999996543
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.63 E-value=4.5e-05 Score=83.19 Aligned_cols=172 Identities=24% Similarity=0.294 Sum_probs=128.4
Q ss_pred CCCCCCCCeEEeecCCCCcccCCCCCCCC-CcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCC-CCCCC
Q 003013 641 LHNLHHLQKISIADCPNLESFPEEGLPST-KLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDG-FPTNL 718 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~L 718 (857)
+..++.++.|.+.++ .+..++.....+. +|+.|++++ +.++.+|..+..+++|+.|.+.+| .+..+|... .+++|
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhh
Confidence 444678999999876 6778888777774 999999998 557888777899999999999999 567777764 78999
Q ss_pred CeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceecc
Q 003013 719 KSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLS 795 (857)
Q Consensus 719 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 795 (857)
+.|+++++.... ++. .......|++|.+++ .. ....+. .++++..+.+.+ +.+..++.....+++|++|+++
T Consensus 189 ~~L~ls~N~i~~-l~~-~~~~~~~L~~l~~~~-N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 189 NNLDLSGNKISD-LPP-EIELLSALEELDLSN-NS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLS 263 (394)
T ss_pred hheeccCCcccc-Cch-hhhhhhhhhhhhhcC-Cc-ceecchhhhhcccccccccCC-ceeeeccchhccccccceeccc
Confidence 999999987633 222 123445699999987 22 333333 456666666555 6676666666889999999999
Q ss_pred CCCCCCCCCCCCccccccceeecCCc
Q 003013 796 YCRKLTYFSKEGLPKSLLRLYINHCP 821 (857)
Q Consensus 796 ~c~~l~~ip~~~l~~~L~~L~i~~c~ 821 (857)
+| .+..++..+-..+++.|++++..
T Consensus 264 ~n-~i~~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 264 NN-QISSISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred cc-cccccccccccCccCEEeccCcc
Confidence 88 88888764334789999998853
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.49 E-value=0.00016 Score=54.26 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCCCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCC
Q 003013 645 HHLQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRC 703 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c 703 (857)
|+|++|++++| .+..++.. +..+++|++|+++++. ++.++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666666 55566543 3456666666666543 444443 5566666666666665
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.48 E-value=4.5e-05 Score=86.76 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=96.2
Q ss_pred cCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCC-cchhhhCCCCCCcEEeEcCCCCCCcCCCCCC
Q 003013 354 DIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLT-KLPQALLTLCSLTDMKILGCASLVSFPEVAL 432 (857)
Q Consensus 354 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 432 (857)
+-.+|+.|++++...+..-|. .+++.+.|.|+.|.+++-.... .+.....+++||+.||++++ +++.+..++.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~-----~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~ 193 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWP-----KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISR 193 (699)
T ss_pred HHHhhhhcCccccchhhccHH-----HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhc
Confidence 345688888887544433332 2355555888888888743322 34455677899999999987 7777777888
Q ss_pred CCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCC-------CCCCCCCCccEEeccccccccccChhhhc
Q 003013 433 PSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSF-------PEIALPSQLRTVRIQECNALKSLPEAWMH 505 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~l~~lp~~~~~ 505 (857)
+++|+.|.+.+.. ++.-......-.+++|+.||+|........ .-...+|+|+.|+.++...-..+-..+..
T Consensus 194 LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 194 LKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred cccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 9999999888766 444332222223889999999875443321 11245788888888874322222222222
Q ss_pred cCCCCccEEEecC
Q 003013 506 NSNSSLESLEIRS 518 (857)
Q Consensus 506 ~~l~~L~~L~l~~ 518 (857)
. -++|+.+.+-+
T Consensus 273 s-H~~L~~i~~~~ 284 (699)
T KOG3665|consen 273 S-HPNLQQIAALD 284 (699)
T ss_pred h-CccHhhhhhhh
Confidence 2 25555554443
No 53
>PLN03150 hypothetical protein; Provisional
Probab=97.45 E-value=0.00033 Score=80.22 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=60.4
Q ss_pred CceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013 388 RLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466 (857)
Q Consensus 388 ~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 466 (857)
.++.|+|+++.....+|..+..+++|+.|+|++|.....+| .++.+++|+.|+|++|.....+|..+.. +++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~--L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ--LTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc--CCCCCEEE
Confidence 36777888776656777778888888888888775555566 3666777777777777644466666655 77777777
Q ss_pred EecCCCCCCCC
Q 003013 467 IRSCNSLVSFP 477 (857)
Q Consensus 467 l~~~~~~~~~~ 477 (857)
+++|.....+|
T Consensus 497 Ls~N~l~g~iP 507 (623)
T PLN03150 497 LNGNSLSGRVP 507 (623)
T ss_pred CcCCcccccCC
Confidence 77665443444
No 54
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.41 E-value=0.0002 Score=68.64 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=34.3
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchh
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ 197 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~ 197 (857)
+|||+++.+++...|... .....+.+-|+|..|+|||||+++++......
T Consensus 2 fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 799999999999999521 33466999999999999999999999854444
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.35 E-value=0.00033 Score=80.19 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=51.2
Q ss_pred cceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecC
Q 003013 623 LEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRR 702 (857)
Q Consensus 623 L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 702 (857)
+..|++.++.--..+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455554333334555566666666666666644445665566666666666666554445666666666666666666
Q ss_pred CCCCcccCC
Q 003013 703 CPSVVSFPE 711 (857)
Q Consensus 703 c~~l~~l~~ 711 (857)
|.....+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 643334443
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.33 E-value=6.7e-06 Score=81.16 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCCCCccEEeecCCCCCcccCC-------CCCCCCCCeEEecCCCCcccc---cccccCCCCCccEeEEcC
Q 003013 689 MHNLTSLLNLEIRRCPSVVSFPE-------DGFPTNLKSLKVHDLKISKAL---LEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 689 ~~~l~~L~~L~l~~c~~l~~l~~-------~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~ 750 (857)
+..+++|+.|++.+| .++.-.. ....|+|++|.+.+|.+.... ........+.|+.|+|.+
T Consensus 237 L~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred hcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 344566666666666 2322110 012466777777766653321 111233356666666666
No 57
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.31 E-value=0.00015 Score=68.62 Aligned_cols=56 Identities=23% Similarity=0.387 Sum_probs=36.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccC
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHY 200 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F 200 (857)
-+++||.++-+++..-++..... .++.+.-+-.||.+|+||||||+.|.+. ....|
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred HHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 46799999988876555432111 2346788999999999999999999994 44444
No 58
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.13 E-value=0.0011 Score=60.65 Aligned_cols=59 Identities=27% Similarity=0.214 Sum_probs=43.3
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCC
Q 003013 146 YGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF 212 (857)
Q Consensus 146 vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~ 212 (857)
+|++...+.+...+... ....+-|+|..|+||||+|+.+++... ..-..++++..++..
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~ 59 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLL 59 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhh
Confidence 47888899999988543 346888999999999999999999532 222345566655544
No 59
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.12 E-value=7.3e-05 Score=84.36 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=16.8
Q ss_pred CCceEEEccCCCCCCc--chhhhCCCCCCcEEeEcC
Q 003013 387 CRLRFLELSYCQGLTK--LPQALLTLCSLTDMKILG 420 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~--lp~~~~~l~~L~~L~l~~ 420 (857)
+.|+.|.+..|..+.. +-.....+++|+.|++++
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4444444544444443 223345556666666655
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.09 E-value=0.0008 Score=60.15 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=52.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchh---ccCCceEEEEeCCCCCHHHHHHHHHHHccCCCCCCCCChHHHHHHHHh
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQ---RHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKE 245 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~---~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 245 (857)
+-+++-|+|..|+||||+++.+.++.... ..-..++|+.++...+...+.+.|++.++.... ...+...+.+.+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHH
Confidence 44789999999999999999998853211 012345688888877999999999999998765 33455555555544
Q ss_pred hc
Q 003013 246 RL 247 (857)
Q Consensus 246 ~l 247 (857)
.+
T Consensus 82 ~l 83 (131)
T PF13401_consen 82 AL 83 (131)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.02 E-value=0.0012 Score=45.16 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=27.7
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCC
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPE 429 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~ 429 (857)
++|++|++++| .++.+|..++.|++|++|++++| .+.+++.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 36777888875 45677777788888888888877 4555543
No 62
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.01 E-value=0.00023 Score=80.32 Aligned_cols=42 Identities=17% Similarity=0.460 Sum_probs=21.2
Q ss_pred CCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCC
Q 003013 481 LPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSL 522 (857)
Q Consensus 481 ~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l 522 (857)
.+.+|+.|+++.|..+.+..-......+++|+.|.+.+|..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~l 282 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNL 282 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCcc
Confidence 345556666665554444333333333556666665555543
No 63
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.95 E-value=0.0036 Score=64.10 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=46.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHHHHHccCCCCCCCCChHHHHHHHHh
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKDQSNNDDDLNSLQVKLKE 245 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 245 (857)
.-.++.|+|..|+||||+++.+++...... + ..+|+ +....+..++...|+..++.... ..+.......+..
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~ 113 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELED 113 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHH
Confidence 346899999999999999999998644221 1 12233 33456778899999988876542 2333334444443
No 64
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.91 E-value=5.3e-05 Score=81.93 Aligned_cols=103 Identities=29% Similarity=0.265 Sum_probs=68.6
Q ss_pred CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCC---CCCCCeEecCCCCCCcccCCCCCCcccc
Q 003013 713 GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPF---PASLTELWISFMPDLECLSSIGENLTSL 789 (857)
Q Consensus 713 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~---~~~L~~L~l~~~~~l~~l~~~~~~l~~L 789 (857)
.+++.|+.|++++|...+.- .+..++.|++|+|+.| .+..+|.+ -..|..|.+.+ +.++.+- ++.++.+|
T Consensus 184 qll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN--~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL 256 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN--CLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSL 256 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH---HHHhcccccccccccc--hhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhh
Confidence 45567777777777654422 4566777888888763 34444441 12377777777 6787776 66789999
Q ss_pred CceeccCCCCCCCCCCC---CccccccceeecCCcch
Q 003013 790 KTLRLSYCRKLTYFSKE---GLPKSLLRLYINHCPLI 823 (857)
Q Consensus 790 ~~L~l~~c~~l~~ip~~---~l~~~L~~L~i~~c~~l 823 (857)
+.|++++| -|....+. +...+|..|++.|+|.-
T Consensus 257 ~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 257 YGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99999988 44444331 22368899999998843
No 65
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.88 E-value=0.00075 Score=67.57 Aligned_cols=44 Identities=39% Similarity=0.483 Sum_probs=36.0
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
++||+.+.++|.+++..+ ....+.|+|..|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 589999999999999654 35789999999999999999999853
No 66
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.86 E-value=0.0011 Score=68.32 Aligned_cols=52 Identities=15% Similarity=0.290 Sum_probs=42.8
Q ss_pred eeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccc
Q 003013 144 KVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDR 195 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~ 195 (857)
+++|.++.++++++++.......+..-++++++|..|.||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6999999999999999764321234568999999999999999999988543
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0023 Score=62.19 Aligned_cols=59 Identities=8% Similarity=0.123 Sum_probs=33.4
Q ss_pred CCCcceeeccccccccccchhhh-cCCCCCccEEEEecCCCCCCCCCC-CCCCCccEEeccc
Q 003013 433 PSQLRTVRIQECNALKSLPEAWM-YNSNSSLESLKIRSCNSLVSFPEI-ALPSQLRTVRIQE 492 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~ 492 (857)
++.++.|+|.++. +.+..+... ...+|.|+.|+++.++--..+... ....+|++|.+.|
T Consensus 70 ~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 70 VTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred hhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 6677777777654 333322211 134788888888765433333332 3446777777766
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.80 E-value=0.0015 Score=44.76 Aligned_cols=37 Identities=11% Similarity=0.342 Sum_probs=19.5
Q ss_pred CCcEEeEcCCCCCCcCCC-CCCCCCcceeecccccccccc
Q 003013 412 SLTDMKILGCASLVSFPE-VALPSQLRTVRIQECNALKSL 450 (857)
Q Consensus 412 ~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~l 450 (857)
+|++|++++| .++.+|. ++.+++|++|+++++. ++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCC
Confidence 5566666665 4445554 5556666666666554 4443
No 69
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.78 E-value=0.0015 Score=65.20 Aligned_cols=48 Identities=25% Similarity=0.341 Sum_probs=34.8
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC----CCHHHHHH
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED----FDVFGVSK 219 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~----~~~~~i~~ 219 (857)
+.+..+-.||.+|+||||||+.+.+..+-.. ..||..|-. -|+++|.+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHH
Confidence 3778888999999999999999999755554 445655543 34444443
No 70
>PRK07261 topology modulation protein; Provisional
Probab=96.77 E-value=0.0025 Score=59.71 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=25.6
Q ss_pred EEEEeccCCcchHHHHHHHhcccchh-ccCCceEEE
Q 003013 172 VISINGMAGVGKTTLAQLVYNDDRVQ-RHYEIKAWT 206 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~~~~~-~~Fd~~~wv 206 (857)
.|.|+|++|.||||||+.+....... -+.|...|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 58999999999999999987643222 245666663
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.76 E-value=0.0061 Score=69.01 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=59.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccch---hccCCc--eEEEEeCCCCCHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRV---QRHYEI--KAWTCVSEDFDVFGV 217 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~---~~~Fd~--~~wv~vs~~~~~~~i 217 (857)
+.++|||++.++|...|...-. +.....++-|+|..|.|||+.++.|.+..+. ...... +++|....-.+...+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4689999999999998865211 1123367789999999999999999875322 122232 334444444577888
Q ss_pred HHHHHHHccCCC
Q 003013 218 SKFILNSIAKDQ 229 (857)
Q Consensus 218 ~~~i~~~l~~~~ 229 (857)
...|++++....
T Consensus 834 YqvI~qqL~g~~ 845 (1164)
T PTZ00112 834 YQVLYKQLFNKK 845 (1164)
T ss_pred HHHHHHHHcCCC
Confidence 888888885543
No 72
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.01 Score=62.49 Aligned_cols=99 Identities=23% Similarity=0.220 Sum_probs=72.4
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhc-cCCceEEEEeCCCCCHHHHHHHHHH
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQR-HYEIKAWTCVSEDFDVFGVSKFILN 223 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~-~Fd~~~wv~vs~~~~~~~i~~~i~~ 223 (857)
+.+||++.+++...|..--. +....-+-|+|..|+|||+.++.|.+..+... ..+ ++.|..-.......+..+|++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 19 LPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 89999999999988865321 11223389999999999999999999533321 122 677777778889999999999
Q ss_pred HccCCCCCCCCChHHHHHHHHhhc
Q 003013 224 SIAKDQSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 224 ~l~~~~~~~~~~~~~~~~~l~~~l 247 (857)
+++.... ......+....+.+.+
T Consensus 96 ~~~~~p~-~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 96 KLGKVPL-TGDSSLEILKRLYDNL 118 (366)
T ss_pred HcCCCCC-CCCchHHHHHHHHHHH
Confidence 9985444 4556666666666655
No 73
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.67 E-value=0.028 Score=64.07 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=45.5
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCC---ceEEEEeC
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYE---IKAWTCVS 209 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd---~~~wv~vs 209 (857)
++++|++...+.+...+... ....+.|+|..|+||||+|+.+++..+....+. ..-|+.+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 46899999999988887432 446799999999999999999998654444432 23466554
No 74
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.66 E-value=0.0012 Score=68.90 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=39.3
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++||+++.++.+..++..... .......+-++|+.|+||||||+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999988853211 1224556789999999999999999884
No 75
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.58 E-value=0.0016 Score=57.28 Aligned_cols=22 Identities=45% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|+|.|+.|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998773
No 76
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.51 E-value=0.0018 Score=68.12 Aligned_cols=51 Identities=27% Similarity=0.436 Sum_probs=40.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|+++.++.+..++..... .++....+-|+|+.|+||||+|+.+.+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 45699999999998888754211 1234567889999999999999999885
No 77
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.46 E-value=0.0038 Score=67.88 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=35.8
Q ss_pred CeeecchhHHHH---HHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEE---IIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~---i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++||.++.... +..++... ....+-+||.+|+||||+|+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 458898887655 77777332 5667889999999999999999884
No 78
>PRK06696 uridine kinase; Validated
Probab=96.39 E-value=0.0043 Score=61.13 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=35.6
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 147 GREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 147 G~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|++-+++|.+.+.... .....+|||-|.+|.||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46677788888886532 236899999999999999999999873
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.34 E-value=2.4e-05 Score=84.46 Aligned_cols=100 Identities=20% Similarity=0.185 Sum_probs=59.7
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCC-CCCcceeeccccccccccchhhhcCCCCCccEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVAL-PSQLRTVRIQECNALKSLPEAWMYNSNSSLESL 465 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~-l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 465 (857)
+.|+.|+|+.|.. ..+- .+..|++|++|+|++| .+..+|.++. --.|+.|.++++. ++.+-.. .++.+|+.|
T Consensus 187 ~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~gi---e~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNA-LTTLRGI---ENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhh-hhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeecccH-HHhhhhH---Hhhhhhhcc
Confidence 6677777777643 3333 5667777777777776 5666664433 1237777777765 5554332 227777777
Q ss_pred EEecCCCCCC---CCCCCCCCCccEEeccccc
Q 003013 466 KIRSCNSLVS---FPEIALPSQLRTVRIQECN 494 (857)
Q Consensus 466 ~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 494 (857)
|+++| .+.. +..++.+..|+.|++.|++
T Consensus 260 DlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 260 DLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred chhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77764 2222 2234555667777777744
No 80
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.007 Score=61.92 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=31.6
Q ss_pred CeeecchhHH--HHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 143 AKVYGREKEK--EEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 143 ~~~vG~~~~~--~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+++||.++-. ..++..+.+. ..+...-.||.+|+||||||+.|..
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~-----~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA-----GHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc-----CCCceeEEECCCCCCHHHHHHHHHH
Confidence 4577776554 2333333332 3677778999999999999999988
No 81
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.24 E-value=0.0023 Score=73.10 Aligned_cols=127 Identities=19% Similarity=0.175 Sum_probs=83.9
Q ss_pred CCceEEEccCCCCCC-cchhhhC-CCCCCcEEeEcCCCCCCc-CCC-CCCCCCcceeeccccccccccchhhhcCCCCCc
Q 003013 387 CRLRFLELSYCQGLT-KLPQALL-TLCSLTDMKILGCASLVS-FPE-VALPSQLRTVRIQECNALKSLPEAWMYNSNSSL 462 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~-~lp~~~~-~l~~L~~L~l~~~~~l~~-~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 462 (857)
.+|++|++++...+. ..|..++ .||+|+.|.+.|-..... +.. ...+++|..||++++. ++.+ .++ +.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GI--S~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGI--SRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHH--hccccH
Confidence 789999999865543 3444454 489999999987422211 222 3458999999999976 7777 333 449999
Q ss_pred cEEEEecCCCCC--CCCCCCCCCCccEEeccccccccccChhh-----hccCCCCccEEEecC
Q 003013 463 ESLKIRSCNSLV--SFPEIALPSQLRTVRIQECNALKSLPEAW-----MHNSNSSLESLEIRS 518 (857)
Q Consensus 463 ~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~lp~~~-----~~~~l~~L~~L~l~~ 518 (857)
+.|.+.+..... .+-.+..+++|+.||+|.-... ..+..+ ....||+|+.|+.++
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCC
Confidence 999997754332 1235678899999999984332 222111 123478888888886
No 82
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.0039 Score=60.51 Aligned_cols=51 Identities=27% Similarity=0.440 Sum_probs=42.5
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.++||.+.-++++-=.+..... .++.+--|-++|.+|+||||||.-|.|.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 45689999999888777765443 5567889999999999999999999994
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.17 E-value=0.0022 Score=70.02 Aligned_cols=32 Identities=34% Similarity=0.278 Sum_probs=15.8
Q ss_pred CCeEecCCCCCCcccCCCCCCccccCceeccCC
Q 003013 765 LTELWISFMPDLECLSSIGENLTSLKTLRLSYC 797 (857)
Q Consensus 765 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c 797 (857)
|+.+++.+ +.+..++.....++.+..|++.++
T Consensus 234 L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 234 LRELYLSG-NRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HHHHhccc-Cccccccccccccccccccchhhc
Confidence 45555555 344444323345555555555544
No 84
>PTZ00301 uridine kinase; Provisional
Probab=96.03 E-value=0.0083 Score=57.85 Aligned_cols=40 Identities=28% Similarity=0.455 Sum_probs=28.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 211 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~ 211 (857)
..+|||-|..|.||||||+.+.+ +....+.....+.++.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~--~l~~~~~~~~~~vi~~D 42 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS--ELMAHCGPVSIGVICED 42 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH--HHHhhcCCCeEEEeCCC
Confidence 47999999999999999998877 34343433333344443
No 85
>PRK07667 uridine kinase; Provisional
Probab=96.00 E-value=0.0087 Score=57.37 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.|.+.+.... +...+|||-|..|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456777775543 25589999999999999999999874
No 86
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.98 E-value=0.028 Score=57.10 Aligned_cols=78 Identities=27% Similarity=0.264 Sum_probs=62.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFI 221 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i 221 (857)
++.+.+|+.+.+.+..++-..+. .=...|-|+|..|.|||.+++.+++.. .. ..+|+++-+-|..+-+..+|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 45578999999999999855421 123455899999999999999999954 22 35899999999999999999
Q ss_pred HHHccC
Q 003013 222 LNSIAK 227 (857)
Q Consensus 222 ~~~l~~ 227 (857)
+.+...
T Consensus 77 L~~~~~ 82 (438)
T KOG2543|consen 77 LNKSQL 82 (438)
T ss_pred HHHhcc
Confidence 999963
No 87
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.007 Score=53.50 Aligned_cols=33 Identities=36% Similarity=0.438 Sum_probs=25.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCce
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIK 203 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~ 203 (857)
..-|+|-||+|+||||+++.+.+..+... |..-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kvg 37 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKVG 37 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-ceee
Confidence 35789999999999999999998433332 5443
No 88
>PF05729 NACHT: NACHT domain
Probab=95.87 E-value=0.0094 Score=55.77 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=36.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhcc----CCceEEEEeCCCCCHH---HHHHHHHHHc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRH----YEIKAWTCVSEDFDVF---GVSKFILNSI 225 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~----Fd~~~wv~vs~~~~~~---~i~~~i~~~l 225 (857)
+++-|.|.+|+||||+++.+..+...... |..++|....+..+.. .+...|....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 62 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQL 62 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhh
Confidence 47899999999999999999886433333 4456666665543322 4444444443
No 89
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.84 E-value=0.0066 Score=65.92 Aligned_cols=50 Identities=22% Similarity=0.360 Sum_probs=40.1
Q ss_pred eeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++|.++.+++|++.|......-+..-+++.++|..|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994321112235579999999999999999999883
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=95.84 E-value=0.015 Score=60.98 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.++..+.+..++..+ +..-+-+||..|+||||+|+.+.+.
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999888888887433 4444669999999999999999874
No 91
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.84 E-value=0.024 Score=52.25 Aligned_cols=78 Identities=19% Similarity=0.245 Sum_probs=47.1
Q ss_pred CcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeE
Q 003013 670 KLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLE 747 (857)
Q Consensus 670 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 747 (857)
+...++++++. +..++ .+..++.|.+|.+.++ .++.+... .++++|+.|.+.+|...+-..-..+..++.|++|.
T Consensus 43 ~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccc-hhhcc-cCCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45556666633 33333 3556777777777776 44444433 45677788888777654433223456677777777
Q ss_pred EcC
Q 003013 748 IWG 750 (857)
Q Consensus 748 l~~ 750 (857)
+-+
T Consensus 120 ll~ 122 (233)
T KOG1644|consen 120 LLG 122 (233)
T ss_pred ecC
Confidence 766
No 92
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.81 E-value=0.0051 Score=61.44 Aligned_cols=166 Identities=11% Similarity=0.129 Sum_probs=90.5
Q ss_pred hhhhcCCCCCeEeccCCCCcccccccc--------cccCCCCCCCCCceEEEccCCCCCC----cchhhhCCCCCCcEEe
Q 003013 350 LFEQDIISLNRLQIKGCPRLLSLVTEE--------EHDHQQPELPCRLRFLELSYCQGLT----KLPQALLTLCSLTDMK 417 (857)
Q Consensus 350 ~~~~~~~~L~~L~l~~~~~l~~l~~~~--------~~~~~i~~l~~~L~~L~L~~~~~l~----~lp~~~~~l~~L~~L~ 417 (857)
.++.++..|+.|.+.+|. +...-... .....++ -|++|+++...+|..-. .+...+...+.|+.+.
T Consensus 114 ~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~-~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr 191 (382)
T KOG1909|consen 114 ELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAA-SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVR 191 (382)
T ss_pred HHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccC-CCcceEEEEeeccccccccHHHHHHHHHhccccceEE
Confidence 445667778888887764 21110000 0001111 23788888887765321 2445667778888888
Q ss_pred EcCCCCCCc-C----CCCCCCCCcceeeccccccccccchhhh---cCCCCCccEEEEecCCCCCCCC-----CC-CCCC
Q 003013 418 ILGCASLVS-F----PEVALPSQLRTVRIQECNALKSLPEAWM---YNSNSSLESLKIRSCNSLVSFP-----EI-ALPS 483 (857)
Q Consensus 418 l~~~~~l~~-~----~~~~~l~~L~~L~l~~~~~l~~l~~~~~---~~~l~~L~~L~l~~~~~~~~~~-----~~-~~~~ 483 (857)
+..|..-.. + ..+..+++|+.|+|+++. ++.-..... ...+++|++|++++|..-..=. .+ ...+
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p 270 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAP 270 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCC
Confidence 877532111 1 023457888888888876 443221111 1337788888888874322200 01 3367
Q ss_pred CccEEeccccccccc----cChhhhccCCCCccEEEecCCC
Q 003013 484 QLRTVRIQECNALKS----LPEAWMHNSNSSLESLEIRSCD 520 (857)
Q Consensus 484 ~L~~L~l~~~~~l~~----lp~~~~~~~l~~L~~L~l~~c~ 520 (857)
+|++|.+.+|..-.. +...+.. .+.|+.|++++|.
T Consensus 271 ~L~vl~l~gNeIt~da~~~la~~~~e--k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 271 SLEVLELAGNEITRDAALALAACMAE--KPDLEKLNLNGNR 309 (382)
T ss_pred CCceeccCcchhHHHHHHHHHHHHhc--chhhHHhcCCccc
Confidence 888888887653211 1112222 4778888887754
No 93
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.74 E-value=0.002 Score=70.40 Aligned_cols=153 Identities=19% Similarity=0.133 Sum_probs=102.0
Q ss_pred cCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCC
Q 003013 639 AGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNL 718 (857)
Q Consensus 639 ~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 718 (857)
..+..+.+|+.|++.++ .++.+......+++|++|+++++. ++.+. .+..++.|+.|++.+| .+..+.....+.+|
T Consensus 89 ~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L 164 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGN-LISDISGLESLKSL 164 (414)
T ss_pred cccccccceeeeecccc-chhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccC-cchhccCCccchhh
Confidence 34667899999999986 566666546678899999999844 65554 4677888999999998 56777766668999
Q ss_pred CeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcccCCCCCCccc--cCceec
Q 003013 719 KSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLECLSSIGENLTS--LKTLRL 794 (857)
Q Consensus 719 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~--L~~L~l 794 (857)
+.+++++|.....-... ...+.+|+.+.+.+ +.+..+.. ....+..+++.. +.+..+- +...+.. |+.+++
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~--n~i~~i~~~~~~~~l~~~~l~~-n~i~~~~-~l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGG--NSIREIEGLDLLKKLVLLSLLD-NKISKLE-GLNELVMLHLRELYL 239 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccC--CchhcccchHHHHHHHHhhccc-ccceecc-CcccchhHHHHHHhc
Confidence 99999998765433211 47788999999987 23333322 223333333333 3343333 2223333 899999
Q ss_pred cCCCCC
Q 003013 795 SYCRKL 800 (857)
Q Consensus 795 ~~c~~l 800 (857)
.+++.-
T Consensus 240 ~~n~i~ 245 (414)
T KOG0531|consen 240 SGNRIS 245 (414)
T ss_pred ccCccc
Confidence 998543
No 94
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.0077 Score=56.22 Aligned_cols=47 Identities=28% Similarity=0.195 Sum_probs=31.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFI 221 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i 221 (857)
..+|+|-||=|+||||||+.+.++...+. ..-.|-+++=+....+++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~-----~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKV-----FYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCce-----eeecccCChHHHHHHHhH
Confidence 46999999999999999999988533221 222344555444444443
No 95
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.60 E-value=0.028 Score=66.38 Aligned_cols=51 Identities=33% Similarity=0.483 Sum_probs=38.6
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|.+..+++|.+++.........+..++.++|..|+||||+|+.+.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999998764321101123458999999999999999999884
No 96
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.57 E-value=0.017 Score=55.25 Aligned_cols=56 Identities=29% Similarity=0.365 Sum_probs=41.7
Q ss_pred ccCCeeecchhHHH---HHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccc
Q 003013 140 VNEAKVYGREKEKE---EIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDR 195 (857)
Q Consensus 140 ~~~~~~vG~~~~~~---~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~ 195 (857)
+.-+++||.++.+. -|++.|.+...=++=-.+-|-.||..|.|||.+|+++.|..+
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 34467999988764 578888653210112578899999999999999999999643
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.57 E-value=0.019 Score=56.98 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 148 ~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
.+...+.+..++.. .....|-|+|..|+||||||+.+++.. .......+++.++.
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAE 76 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHH
Confidence 45667777777632 245788999999999999999999853 22333445555433
No 98
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.034 Score=58.07 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=54.0
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc----chhccCCceEEEE-eCCCCCHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD----RVQRHYEIKAWTC-VSEDFDVFGV 217 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~----~~~~~Fd~~~wv~-vs~~~~~~~i 217 (857)
++++|.+..++.+..++..+ .-.+.+-++|..|+||||+|+.+.+.. ....|+|...|.. -.+...++.|
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH
Confidence 56899999999999999543 245677899999999999999987732 2345778777765 3444555554
Q ss_pred HHHHHHHc
Q 003013 218 SKFILNSI 225 (857)
Q Consensus 218 ~~~i~~~l 225 (857)
. ++.+.+
T Consensus 79 r-~~~~~~ 85 (313)
T PRK05564 79 R-NIIEEV 85 (313)
T ss_pred H-HHHHHH
Confidence 3 333433
No 99
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.56 E-value=0.0088 Score=57.51 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
||||.|.+|.||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999873
No 100
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.55 E-value=0.012 Score=67.72 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=34.7
Q ss_pred CeeecchhHHH---HHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKE---EIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~---~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|.++... .+.+++.. +.+..+-+||.+|+||||+|+.+.+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56889988774 45555532 25667789999999999999999984
No 101
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.54 E-value=0.0089 Score=53.11 Aligned_cols=21 Identities=43% Similarity=0.686 Sum_probs=19.4
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|+|.|+.|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998874
No 102
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.53 E-value=0.029 Score=59.09 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=38.8
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|+++..+.+..++... ....+-|+|..|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999543 4456799999999999999999884
No 103
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.07 Score=58.82 Aligned_cols=51 Identities=31% Similarity=0.493 Sum_probs=41.8
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+.+=+|++.-+++|++.+--..-+++-+-+++..+|.+|||||.+|+.|..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ 460 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR 460 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH
Confidence 345689999999999998644332344678999999999999999999987
No 104
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.50 E-value=0.011 Score=63.12 Aligned_cols=55 Identities=25% Similarity=0.195 Sum_probs=40.2
Q ss_pred cccCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+..++++|+++.+++|.+.+...-.. +-...+-|-+||..|+||||+|+++.+.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 334567999999999998887431100 0112455899999999999999999984
No 105
>PF13173 AAA_14: AAA domain
Probab=95.48 E-value=0.014 Score=51.63 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=27.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
+++.|.|+.|+||||++++++.+.. .-+..+++...+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCC
Confidence 6899999999999999999987533 224455555544
No 106
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.012 Score=65.07 Aligned_cols=61 Identities=26% Similarity=0.237 Sum_probs=44.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEE
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTC 207 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~ 207 (857)
.++++|.+..++.+..++..+. -.+.+-++|..|+||||+|+.+.+.....+.+...+|.|
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C 73 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC 73 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC
Confidence 4569999999999999985431 346779999999999999999988544333333344444
No 107
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.41 E-value=0.017 Score=54.24 Aligned_cols=74 Identities=19% Similarity=0.122 Sum_probs=50.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFI 221 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i 221 (857)
-.+|||-++..+++--.-. +.++.-+-|-||+|+||||-+..+....--...=+.+.=...|++-.+.-+..+|
T Consensus 26 l~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH
Confidence 4569999999988877773 3478889999999999999877766532222233445555666666555444444
No 108
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.40 E-value=0.008 Score=57.87 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=64.9
Q ss_pred hhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCC--CCCCcchhhhCCCCCCcEEeEcCCCC--CCcC
Q 003013 352 EQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYC--QGLTKLPQALLTLCSLTDMKILGCAS--LVSF 427 (857)
Q Consensus 352 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~--~~l~~lp~~~~~l~~L~~L~l~~~~~--l~~~ 427 (857)
...+..|+.|++.++. ++++ ..++.| ++|+.|.++.| .....++.....+++|++|++++|.. +..+
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~-------~~~P~L-p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTL-------TNFPKL-PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred cccccchhhhhhhccc-eeec-------ccCCCc-chhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc
Confidence 3455566666666643 2221 234555 79999999987 44445666667779999999998742 2344
Q ss_pred CCCCCCCCcceeeccccccccccchh--hhcCCCCCccEEEEec
Q 003013 428 PEVALPSQLRTVRIQECNALKSLPEA--WMYNSNSSLESLKIRS 469 (857)
Q Consensus 428 ~~~~~l~~L~~L~l~~~~~l~~l~~~--~~~~~l~~L~~L~l~~ 469 (857)
+.+..+.+|..|++.+|. .+.+-.- ....-+++|.+|+-..
T Consensus 110 ~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred chhhhhcchhhhhcccCC-ccccccHHHHHHHHhhhhccccccc
Confidence 456667788888888876 3322210 0001156666665544
No 109
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.38 E-value=0.013 Score=57.17 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=22.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..+|||.|..|+||||||+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999874
No 110
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.38 E-value=0.0087 Score=57.61 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=64.7
Q ss_pred hCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeecccc--ccccccchhhhcCCCCCccEEEEecCCC--CCCCCCCCCC
Q 003013 407 LLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQEC--NALKSLPEAWMYNSNSSLESLKIRSCNS--LVSFPEIALP 482 (857)
Q Consensus 407 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~~~~ 482 (857)
...+.+|+.|.+.++ .++.+..+..+++|++|.++.+ .....++-.... +++|++|+++++.. +..++.+..+
T Consensus 39 ~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~--~P~l~~l~ls~Nki~~lstl~pl~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEK--APNLKVLNLSGNKIKDLSTLRPLKEL 115 (260)
T ss_pred cccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhh--CCceeEEeecCCccccccccchhhhh
Confidence 344556666666655 4444444556778888888876 222233333333 68888888887643 2344556677
Q ss_pred CCccEEecccccccc--ccChhhhccCCCCccEEEecCCCCC
Q 003013 483 SQLRTVRIQECNALK--SLPEAWMHNSNSSLESLEIRSCDSL 522 (857)
Q Consensus 483 ~~L~~L~l~~~~~l~--~lp~~~~~~~l~~L~~L~l~~c~~l 522 (857)
++|..|++.+|.... .....++. .+++|++|+-..+..-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~-ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFL-LLPSLKYLDGCDVDGE 156 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHH-HhhhhccccccccCCc
Confidence 788888888875432 22222222 2577777765554433
No 111
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.34 E-value=0.013 Score=57.08 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=22.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|||.|..|.||||||+.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999874
No 112
>PRK04195 replication factor C large subunit; Provisional
Probab=95.32 E-value=0.03 Score=62.36 Aligned_cols=50 Identities=34% Similarity=0.393 Sum_probs=40.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.+..++++..|+..-. .+...+.+-|+|..|+||||+|+.+.++
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999985421 1123678999999999999999999885
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.32 E-value=0.023 Score=59.68 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=39.8
Q ss_pred cCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-++++|.++..+.+..++..+ .-..++-++|..|+||||+|+.+.+.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 3467999999999999999543 13467778999999999999999884
No 114
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.30 E-value=0.16 Score=51.06 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=64.2
Q ss_pred eecc---hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchh-----ccCCceEEEEeCCCCCHHH
Q 003013 145 VYGR---EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ-----RHYEIKAWTCVSEDFDVFG 216 (857)
Q Consensus 145 ~vG~---~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~-----~~Fd~~~wv~vs~~~~~~~ 216 (857)
-||- .+..+++.++|... ......-+-|+|-.|.||||+++......-.. ..+ .|+.|.....++...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P---~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYP---KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERR 111 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCC---cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHH
Confidence 4554 34455556656443 34566779999999999999999887642211 111 466677889999999
Q ss_pred HHHHHHHHccCCCCCCCCChHHHHHHH
Q 003013 217 VSKFILNSIAKDQSNNDDDLNSLQVKL 243 (857)
Q Consensus 217 i~~~i~~~l~~~~~~~~~~~~~~~~~l 243 (857)
+...|+++++.... ...+...+....
T Consensus 112 ~Y~~IL~~lgaP~~-~~~~~~~~~~~~ 137 (302)
T PF05621_consen 112 FYSAILEALGAPYR-PRDRVAKLEQQV 137 (302)
T ss_pred HHHHHHHHhCcccC-CCCCHHHHHHHH
Confidence 99999999998765 344444444333
No 115
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.29 E-value=0.036 Score=51.18 Aligned_cols=100 Identities=17% Similarity=0.033 Sum_probs=52.9
Q ss_pred cCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCCCcccCC--CCCCccccCceeccCCCCCCCCCCC----
Q 003013 737 SNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPDLECLSS--IGENLTSLKTLRLSYCRKLTYFSKE---- 806 (857)
Q Consensus 737 ~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~ip~~---- 806 (857)
+.+++.|.+|.+.+ +++..+.+ .+++|..|.+.+ +++..+.. ....||.|++|.+-++|- ..-+..
T Consensus 60 lp~l~rL~tLll~n--NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~YR~yv 135 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNN--NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPV-EHKKNYRLYV 135 (233)
T ss_pred CCCccccceEEecC--CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCch-hcccCceeEE
Confidence 34444444444443 33333332 344555555555 45555442 226788999999888853 322221
Q ss_pred -CccccccceeecCCcch-----HHhh-cCCCCCCCCcccC
Q 003013 807 -GLPKSLLRLYINHCPLI-----EERC-RKDEGKYWPMISH 840 (857)
Q Consensus 807 -~l~~~L~~L~i~~c~~l-----~~~~-~~~~g~~w~~i~~ 840 (857)
...|+|+.||+.+-..= +.+. .+.+++.|.+|..
T Consensus 136 l~klp~l~~LDF~kVt~~ER~~A~~~f~~k~~k~~~~~i~~ 176 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKVTRKEREEAEVFFKGKKGKKAAKSINR 176 (233)
T ss_pred EEecCcceEeehhhhhHHHHHHHHHHhccccchhhhhhhhh
Confidence 11368888888765311 1111 2346677777763
No 116
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.23 E-value=0.032 Score=56.58 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=33.6
Q ss_pred eeecchhHHHHHH---HHHhc------CCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEII---ELLLN------DDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~---~~L~~------~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++|.+..+++|. .+... .+-+......-+-++|..|+||||+|+.+.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 4889877776554 33311 11101234567789999999999999999874
No 117
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.22 E-value=0.021 Score=56.49 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+|||.|..|.|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998874
No 118
>PHA00729 NTP-binding motif containing protein
Probab=95.21 E-value=0.025 Score=54.48 Aligned_cols=35 Identities=40% Similarity=0.501 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 153 EEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 153 ~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++++.+... +...|.|.|.+|+||||||..|.+.
T Consensus 6 k~~~~~l~~~------~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 6 KKIVSAYNNN------GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHHhcC------CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4455666333 5568999999999999999999884
No 119
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.016 Score=55.07 Aligned_cols=26 Identities=35% Similarity=0.518 Sum_probs=23.6
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++-+|||-|..|.||||+|+.+.+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 47789999999999999999998884
No 120
>PRK06547 hypothetical protein; Provisional
Probab=95.19 E-value=0.027 Score=52.56 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.3
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+|+|.|..|.||||+|+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999774
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.17 E-value=0.02 Score=60.92 Aligned_cols=46 Identities=15% Similarity=0.302 Sum_probs=37.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|+++.++.+..++..+ ....+-++|..|+||||+|+.+.+.
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998432 4445779999999999999998874
No 122
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.15 E-value=0.0017 Score=55.46 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=50.8
Q ss_pred hCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCC
Q 003013 407 LLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQ 484 (857)
Q Consensus 407 ~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 484 (857)
+.....|...+|++| .+..+|. ...++.++.|++.++. +.++|..+.. ++.|+.|+++.++.....-.+..+.+
T Consensus 49 l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aa--m~aLr~lNl~~N~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 49 LSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAA--MPALRSLNLRFNPLNAEPRVIAPLIK 124 (177)
T ss_pred HhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhh--hHHhhhcccccCccccchHHHHHHHh
Confidence 334444555566665 4555553 2335566666666655 6667766555 77777777766554333223334555
Q ss_pred ccEEeccccccccccChhhhc
Q 003013 485 LRTVRIQECNALKSLPEAWMH 505 (857)
Q Consensus 485 L~~L~l~~~~~l~~lp~~~~~ 505 (857)
|-+|+..+ .....+|...+.
T Consensus 125 l~~Lds~~-na~~eid~dl~~ 144 (177)
T KOG4579|consen 125 LDMLDSPE-NARAEIDVDLFY 144 (177)
T ss_pred HHHhcCCC-CccccCcHHHhc
Confidence 55555555 233455554443
No 123
>PRK08233 hypothetical protein; Provisional
Probab=95.15 E-value=0.017 Score=55.10 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+|+|.|.+|.||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999998874
No 124
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.0045 Score=60.20 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCCCeEEeecCCCCcccCC---CCCCCCCcceEeeccccCccc---CcccCCCCCCccEEeecCCCC---CcccCCCCC
Q 003013 644 LHHLQKISIADCPNLESFPE---EGLPSTKLTELSIRECENLKA---LPNCMHNLTSLLNLEIRRCPS---VVSFPEDGF 714 (857)
Q Consensus 644 l~~L~~L~l~~c~~l~~l~~---~~~~~~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~c~~---l~~l~~~~~ 714 (857)
...++.|.+.+|. +..... .....+.++.+++.++. +.. +...+.++|.|+.|+++.++- ++++|. -
T Consensus 44 ~ra~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~--p 119 (418)
T KOG2982|consen 44 LRALELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL--P 119 (418)
T ss_pred ccchhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcc--c
Confidence 3345556665552 222211 12234577777777743 332 233456788888888876642 223331 2
Q ss_pred CCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 715 PTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 715 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
..+|++|-+.+....-......+..+|.+++|+++.
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 257777777776543322333455667777777765
No 125
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.017 Score=63.76 Aligned_cols=56 Identities=32% Similarity=0.476 Sum_probs=42.8
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccC
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHY 200 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F 200 (857)
.+=+|.+.-+++|++.|--..-..+-+-.++..+|.+|||||.|++.|.+ .....|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 44679999999999998543221233558999999999999999999988 455444
No 126
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.02 E-value=0.014 Score=62.77 Aligned_cols=54 Identities=24% Similarity=0.222 Sum_probs=39.6
Q ss_pred ccCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++++|+++.++++.+.+...-.. +-...+-|-++|..|+|||++|+++.+.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 33457999999999998876321000 1124566899999999999999999884
No 127
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.97 E-value=0.028 Score=53.12 Aligned_cols=36 Identities=39% Similarity=0.575 Sum_probs=28.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEE
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWT 206 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv 206 (857)
...+|.|.|+.|.||||+|+.+++ +....+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 557999999999999999999998 444555555554
No 128
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.96 E-value=0.018 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|+|.|..|.||||+|+.+-+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999988774
No 129
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.11 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++|+|+|.+|+||||++..+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4589999999999999999998764
No 130
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.88 E-value=0.04 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|+|+|.+|+|||||.+.+.+.
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc
Confidence 5679999999999999999999885
No 131
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.036 Score=59.15 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=39.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.+..++.+.+++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 456999999999999998543 13467889999999999999998774
No 132
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.031 Score=61.20 Aligned_cols=47 Identities=28% Similarity=0.357 Sum_probs=37.6
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-+++||.++..+.+..++..+ .-.+.+-+||..|+||||+|+.+.+.
T Consensus 13 ~~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999988888887543 12356889999999999999999774
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.71 E-value=0.029 Score=66.74 Aligned_cols=45 Identities=36% Similarity=0.430 Sum_probs=37.1
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++||+++.++++.+|.... ..-+-++|.+|+|||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996542 233459999999999999998774
No 134
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.64 E-value=0.04 Score=59.24 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=36.4
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+++..+.+...+..+ .-|-|+|..|+||||+|+.+...
T Consensus 22 i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 22 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred ccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 899999999999999765 35789999999999999999874
No 135
>PRK04040 adenylate kinase; Provisional
Probab=94.56 E-value=0.027 Score=53.48 Aligned_cols=23 Identities=35% Similarity=0.627 Sum_probs=21.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|+|+|+.|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.50 E-value=0.037 Score=65.58 Aligned_cols=45 Identities=31% Similarity=0.446 Sum_probs=37.5
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.+|||++..++++..|... ...-+-+||.+|+||||+|+.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~------~~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRR------RQNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcC------CcCceeEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999654 2334459999999999999998874
No 137
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.49 E-value=0.11 Score=53.01 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=22.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhccc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
+..+|+|+|.+|+||||++..+....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887743
No 138
>PRK06762 hypothetical protein; Provisional
Probab=94.44 E-value=0.03 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|+.|.||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998773
No 139
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.44 E-value=0.024 Score=53.41 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=20.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|||.|..|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 140
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.42 E-value=0.11 Score=60.17 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=38.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.+++||.+..++.+.+++..+. =.+.+-++|..|+||||+|+.+.+..
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999985431 23456899999999999999998753
No 141
>PRK06893 DNA replication initiation factor; Validated
Probab=94.40 E-value=0.075 Score=52.52 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=28.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeC
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS 209 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs 209 (857)
...+-|||..|+|||+||+++.+.. ......+.|+.++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHH
Confidence 3578999999999999999999953 2223455677664
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=94.38 E-value=0.078 Score=54.20 Aligned_cols=50 Identities=30% Similarity=0.323 Sum_probs=32.4
Q ss_pred eeecchhHHHHHHHHH---hcC------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIELL---LND------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L---~~~------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++|.+..+++|.++. ... +-........|-++|..|+||||+|+.+.+.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4788877777554442 211 0001112345788999999999999999774
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.37 E-value=0.041 Score=64.62 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=37.3
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++||+++.++++..|... ...-+-+||..|+|||++|+.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999543 2234569999999999999999874
No 144
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.37 E-value=0.073 Score=51.96 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=36.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
.-.++-|+|.+|.||||+|.++... ....-..++|+.... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 4689999999999999999988763 333457789988865 66666554
No 145
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.35 E-value=0.067 Score=50.58 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=33.6
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+|+|.+..+..+.-.... .+=|-++|..|+|||++|+.+-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 46799999999888777743 35789999999999999998865
No 146
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.32 E-value=0.065 Score=54.35 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.0
Q ss_pred CCceEEEEeccCCcchHHHHHHHhc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
....+|||.|..|+||||+|+.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999987754
No 147
>PRK08727 hypothetical protein; Validated
Probab=94.31 E-value=0.077 Score=52.57 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=28.3
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
..|.|||..|+|||+||+++.+. ..+....++++.+.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA 79 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH
Confidence 56999999999999999999885 333333556666533
No 148
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.28 E-value=0.034 Score=53.28 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++.+|.|.|..|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999875
No 149
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.25 E-value=0.027 Score=54.44 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.0
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|||.|..|.||||||+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998773
No 150
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.22 E-value=0.075 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+-|+|..|+|||+||+.+++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999999985
No 151
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.19 E-value=0.027 Score=55.06 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|||.|..|.||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.19 E-value=0.047 Score=64.91 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=37.3
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++||+.+.++++..|... ...-+-++|.+|+||||+|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999554 2334559999999999999998874
No 153
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.055 Score=60.05 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=38.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+++||.+..++.+..++..+ .-.+.+-++|..|+||||+|+.+.+
T Consensus 15 f~diiGq~~~v~~L~~~i~~~-----rl~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQ-----KVHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999543 2345678999999999999999876
No 154
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.18 E-value=0.09 Score=52.19 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=28.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
....+-|||..|+|||+|++.+.+... ..-..+.++.+..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~ 83 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDK 83 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHH
Confidence 345789999999999999999998432 2223445665543
No 155
>PRK03839 putative kinase; Provisional
Probab=94.15 E-value=0.035 Score=52.70 Aligned_cols=22 Identities=45% Similarity=0.806 Sum_probs=20.1
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|.||.|.||||+|+.+.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999884
No 156
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.056 Score=60.30 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=39.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-+++||.+...+.+..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999996432 3468899999999999999988664
No 157
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.11 Score=57.90 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=38.8
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.++.++.+.+++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999995442 3467789999999999999988664
No 158
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.12 E-value=0.16 Score=49.73 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCeeecc-hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGR-EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~-~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.-++|- .+..-.....+.... +.....+-|||..|+|||.|++++++.
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~---~~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENP---GERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHST---TTSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcC---CCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3445675 333444455554442 224556789999999999999999994
No 159
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.11 E-value=0.067 Score=62.62 Aligned_cols=51 Identities=29% Similarity=0.427 Sum_probs=40.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+.+.+|.+..+++|+++|......+.....+|.++|..|+||||+|+.+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999988642110122456899999999999999999987
No 160
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.08 E-value=0.12 Score=58.56 Aligned_cols=47 Identities=26% Similarity=0.300 Sum_probs=38.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.++.++.+.+++..+ +--+.+-++|..|+||||+|+.+.+.
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~g-----RL~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGG-----RLHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999543 13456679999999999999877664
No 161
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.06 E-value=0.059 Score=59.93 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=38.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.+..++.+.+++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999985432 3467889999999999999998664
No 162
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.06 E-value=0.06 Score=58.15 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCc-eEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGF-SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~-~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-+++||.++.+..+..++..+ ++ +.+-++|..|+||||+|+.+.+.
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~------ri~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSG------KIGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcC------CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 466999999999999998543 33 46889999999999999999774
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.05 E-value=0.057 Score=48.73 Aligned_cols=23 Identities=48% Similarity=0.602 Sum_probs=21.1
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+.|+|..|+||||+|+.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 57899999999999999999884
No 164
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.0058 Score=58.91 Aligned_cols=99 Identities=13% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 466 (857)
.+.+.|+.++|. +..+.- ..+|+.|++|.|+-| .+..+..+..|++|++|+|..+. +.++.+.....++++|+.|-
T Consensus 19 ~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCC-ccHHHH-HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 344455555543 232221 345666667766654 55555556666777777776655 55555544445577777777
Q ss_pred EecCCCCCCCCC------CCCCCCccEEe
Q 003013 467 IRSCNSLVSFPE------IALPSQLRTVR 489 (857)
Q Consensus 467 l~~~~~~~~~~~------~~~~~~L~~L~ 489 (857)
|..++....-+. +..+++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 766655443321 23455566555
No 165
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.03 E-value=0.04 Score=49.68 Aligned_cols=20 Identities=50% Similarity=0.838 Sum_probs=18.6
Q ss_pred EEEEeccCCcchHHHHHHHh
Q 003013 172 VISINGMAGVGKTTLAQLVY 191 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~ 191 (857)
.|+|-|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999886
No 166
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.02 E-value=0.043 Score=49.76 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|-++|+.|.||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 167
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.01 E-value=0.11 Score=44.67 Aligned_cols=48 Identities=19% Similarity=0.379 Sum_probs=36.9
Q ss_pred eecchhHHHHHHHHHhcC--CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLND--DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~--~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|..-..+.|++++..- .. ..++.-|++..|..|+|||.+++.|.+.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~-~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP-NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC-CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 788887777777777541 11 3467899999999999999988887664
No 168
>PRK10536 hypothetical protein; Provisional
Probab=93.96 E-value=0.25 Score=48.59 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=40.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCce
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIK 203 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~ 203 (857)
...+.++.......+.+|.. ..+|.+.|..|.|||+||.++.-+.-..+.|+..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kI 107 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRI 107 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEE
Confidence 34577889999999998843 2499999999999999999987753223444433
No 169
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.92 E-value=0.045 Score=51.94 Aligned_cols=21 Identities=52% Similarity=0.793 Sum_probs=18.7
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|+|.|=||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 699999999999999988554
No 170
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.91 E-value=0.08 Score=47.43 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=26.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
.+|+|+|.-|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4899999999999999999999532 23455555555444
No 171
>PRK00625 shikimate kinase; Provisional
Probab=93.90 E-value=0.04 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|-++||.|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 172
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.87 E-value=0.05 Score=52.49 Aligned_cols=27 Identities=37% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCceEEEEeccCCcchHHHHHHHhccc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
+...+|-++||+|.||||.+|.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 356788999999999999999998853
No 173
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.85 E-value=0.096 Score=45.96 Aligned_cols=25 Identities=36% Similarity=0.391 Sum_probs=22.3
Q ss_pred ceEEEEeccCCcchHHHHHHHhccc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
-.+|.+.|.-|.||||+++.+....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999998853
No 174
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.82 E-value=0.053 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|.|..|.||||+|+++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999884
No 175
>PRK05439 pantothenate kinase; Provisional
Probab=93.82 E-value=0.083 Score=53.98 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.8
Q ss_pred CCceEEEEeccCCcchHHHHHHHhc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
....+|||-|..|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 176
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.80 E-value=0.16 Score=53.58 Aligned_cols=51 Identities=25% Similarity=0.300 Sum_probs=37.9
Q ss_pred CeeecchhHHHHHHHHHhcCC--------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDD--------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~--------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+||.++.++.+.-++.... .+..-..+-|-++|..|+||||+|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999987776420 001112467889999999999999999884
No 177
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.78 E-value=0.035 Score=47.20 Aligned_cols=21 Identities=48% Similarity=0.659 Sum_probs=18.3
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|=|+|.+|+|||++|+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997764
No 178
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.77 E-value=0.0039 Score=60.05 Aligned_cols=85 Identities=18% Similarity=0.229 Sum_probs=57.8
Q ss_pred CCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCcc
Q 003013 433 PSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE 512 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~ 512 (857)
+.+.+.|+.++|. +.++.-... |+.|+.|.|+- +.+..+..+..|++|+.|+|.. +.+.++.+-....++++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~k---Mp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEK---MPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHh---cccceeEEeec-cccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhh
Confidence 4455667777766 665554432 78888888876 3566777777788888888877 4556666655556678888
Q ss_pred EEEecCCCCCc
Q 003013 513 SLEIRSCDSLT 523 (857)
Q Consensus 513 ~L~l~~c~~l~ 523 (857)
.|.|...+...
T Consensus 92 ~LWL~ENPCc~ 102 (388)
T KOG2123|consen 92 TLWLDENPCCG 102 (388)
T ss_pred hHhhccCCccc
Confidence 88887755444
No 179
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.73 E-value=0.041 Score=51.92 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|+|.|..|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 180
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.73 E-value=0.033 Score=47.87 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=17.9
Q ss_pred EEEeccCCcchHHHHHHHhcccchhccCC
Q 003013 173 ISINGMAGVGKTTLAQLVYNDDRVQRHYE 201 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~~~~~~~Fd 201 (857)
|-|+|..|+||||+|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 56899999999999999988 4555553
No 181
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.059 Score=48.06 Aligned_cols=23 Identities=39% Similarity=0.667 Sum_probs=20.9
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+++.|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988766
No 182
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.61 E-value=0.085 Score=54.03 Aligned_cols=51 Identities=22% Similarity=0.397 Sum_probs=44.0
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|+++..+++++.+.......+..-+|+-+.|..|.||||||..+-+-
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998765435567899999999999999999988773
No 183
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=93.60 E-value=0.072 Score=57.05 Aligned_cols=54 Identities=28% Similarity=0.269 Sum_probs=39.7
Q ss_pred cccCCeeecchhHHHHHHHHHhcC--------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLND--------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+...++.|.+..+++|.+.+... .. +-...+-|-++|..|.|||++|+++.+.
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~-Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQI-GIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhc-CCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 344567999999988888766321 00 1123567889999999999999999884
No 184
>PRK05642 DNA replication initiation factor; Validated
Probab=93.59 E-value=0.16 Score=50.35 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=27.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
...+-|||..|+|||+||+++.+... ..=..+++++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~ 81 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPL 81 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeH
Confidence 36789999999999999999988432 22234566665
No 185
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.072 Score=57.60 Aligned_cols=47 Identities=26% Similarity=0.203 Sum_probs=38.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.+..++.+..++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~-----~~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMG-----RVGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred HhhccChHHHHHHHHHHHHhC-----CcceeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999988533 13356889999999999999988764
No 186
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.56 E-value=0.12 Score=56.88 Aligned_cols=54 Identities=26% Similarity=0.230 Sum_probs=39.1
Q ss_pred ccCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++|.|.+..+++|.+.+...-.. +-...+-|-+||..|+|||++|+++++.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 34466889999999988876421000 0113455889999999999999999995
No 187
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.56 E-value=0.052 Score=48.34 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEEeccCCcchHHHHHHHhccc
Q 003013 173 ISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~~ 194 (857)
|-|+|..|+||||+|+.+.++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5689999999999999999953
No 188
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.52 E-value=0.14 Score=51.15 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=37.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhc----cCCceEEEEeCCCCCHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~----~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
.-.++.|+|..|.||||+|.++.-...... .-..++|++-...++..++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 568999999999999999999864322222 236789998877777655544
No 189
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=0.18 Score=55.98 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=38.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.++.++.+..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999995431 3456789999999999999988774
No 190
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.49 E-value=0.062 Score=57.96 Aligned_cols=52 Identities=29% Similarity=0.235 Sum_probs=37.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++.|.+..+++|.+++...-.. +-....-|-++|..|+|||++|++|.+.
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999988888876421000 1123456789999999999999999984
No 191
>PRK12377 putative replication protein; Provisional
Probab=93.48 E-value=0.082 Score=52.42 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=29.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeC
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS 209 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs 209 (857)
...+.++|..|+|||+||.+|.+.. ....-.++++++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~~~ 138 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVTVP 138 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEEHH
Confidence 4678999999999999999999953 3334446676664
No 192
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.43 E-value=0.095 Score=54.58 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=36.6
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+||.++.+..++-.+.+. ...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999987777653 345577999999999999999876
No 193
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.41 E-value=0.12 Score=47.00 Aligned_cols=37 Identities=32% Similarity=0.488 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 149 EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 149 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.+..+++.++|. + +++.++|..|||||||+..+..+.
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 356788888882 2 799999999999999999998863
No 194
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.41 E-value=0.078 Score=48.99 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|..|.|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999874
No 195
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=93.41 E-value=0.081 Score=52.77 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=38.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCC-ceEEEEeCCCC-CHHHHHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYE-IKAWTCVSEDF-DVFGVSKFILN 223 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd-~~~wv~vs~~~-~~~~i~~~i~~ 223 (857)
+-..++|.|-.|+||||||+.+++ +++.+|+ .++++-+.+.. .+..+.+++.+
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 346889999999999999999999 4555564 44556677765 34555555544
No 196
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.40 E-value=0.072 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999877
No 197
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.38 E-value=0.06 Score=51.09 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+|..|.||||||+.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 58999999999999999999883
No 198
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.09 Score=53.21 Aligned_cols=53 Identities=26% Similarity=0.234 Sum_probs=39.0
Q ss_pred cCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-+++-|.|+..++|.+...-.=.. +=+..+=|-.||.+|.|||-||++|.|.
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3456889999999988876432100 1134566789999999999999999994
No 199
>PRK06217 hypothetical protein; Validated
Probab=93.35 E-value=0.056 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.1
Q ss_pred eEEEEeccCCcchHHHHHHHhccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
..|.|.|+.|.||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998753
No 200
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.34 E-value=0.08 Score=51.26 Aligned_cols=78 Identities=21% Similarity=0.172 Sum_probs=49.6
Q ss_pred cccCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC--CCHHH
Q 003013 139 LVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFG 216 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~--~~~~~ 216 (857)
.+.-++++|.|..++.+++--..=- .+....-+-+||..|.|||++++++.+....+. .--|.|+++ .++.+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L~~l~~ 96 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDLGDLPE 96 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHhccHHH
Confidence 3456779999999888866432200 122456677899999999999999988533332 233455543 35555
Q ss_pred HHHHHH
Q 003013 217 VSKFIL 222 (857)
Q Consensus 217 i~~~i~ 222 (857)
|...|-
T Consensus 97 l~~~l~ 102 (249)
T PF05673_consen 97 LLDLLR 102 (249)
T ss_pred HHHHHh
Confidence 555444
No 201
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.32 E-value=0.065 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|.|+|+.|.||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999874
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.29 E-value=0.083 Score=63.11 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=36.9
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.+|||+++.++++..|... .-.-+-++|..|+|||++|+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999553 2234458999999999999998774
No 203
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.27 E-value=0.15 Score=51.40 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=23.9
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++.+|+|.|..|.|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999998884
No 204
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=93.27 E-value=0.058 Score=53.17 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=21.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-|.|+|++|+|||||+..+..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcC
Confidence 67899999999999999999876
No 205
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.27 E-value=0.2 Score=52.87 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=38.1
Q ss_pred CeeecchhHHHHHHHHHhcC--------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLND--------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.++.++.+..++... ..+..-...-|-++|..|+||||+|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999888541 1100112467899999999999999998774
No 206
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.24 E-value=0.055 Score=49.30 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=19.9
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|.|.|..|.||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 207
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.24 E-value=0.11 Score=58.87 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=42.8
Q ss_pred cccCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....++++|-++..+++..|+..... .....+++.|+|..|.||||+++.+.+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33456799999999999999865432 2234468999999999999999999874
No 208
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.24 E-value=0.16 Score=52.02 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=30.8
Q ss_pred eecchhHHHHHHHHHh---cC------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLL---ND------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~---~~------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|.++.+++|.++.. .. +-+......-|-++|..|+||||+|+.+...
T Consensus 24 l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 24 LIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 7888777776655321 11 0000112235779999999999999887763
No 209
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.23 E-value=0.087 Score=57.58 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=37.3
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-+++||.+..++.+..++..+ .-.+.+-++|..|+||||+|+.+.+
T Consensus 12 f~dliGQe~vv~~L~~a~~~~-----ri~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLN-----KIPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCccHHHHHHHHHH
Confidence 467999999999888888543 1234788999999999999998865
No 210
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.22 E-value=0.15 Score=50.36 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=35.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVS 218 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~ 218 (857)
.-.++-|+|.+|+||||+|.++... ....-..++|++.- .++.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH
Confidence 5679999999999999999998764 22334678888876 56665554
No 211
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.18 E-value=0.075 Score=48.60 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=25.0
Q ss_pred EEEEeccCCcchHHHHHHHhcccchhccCCceEEE
Q 003013 172 VISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWT 206 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv 206 (857)
||+|+|..|+||||++..+....+. ..+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 6899999999999999999884332 234444443
No 212
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.18 E-value=0.066 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998774
No 213
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.18 E-value=0.096 Score=59.05 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=38.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.+..++.+..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999995431 2457899999999999999988663
No 214
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.17 E-value=0.15 Score=45.97 Aligned_cols=41 Identities=24% Similarity=0.165 Sum_probs=29.2
Q ss_pred EEEeccCCcchHHHHHHHhcccchhccCCceE-EEEeCCCCCHHHHHH
Q 003013 173 ISINGMAGVGKTTLAQLVYNDDRVQRHYEIKA-WTCVSEDFDVFGVSK 219 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~-wv~vs~~~~~~~i~~ 219 (857)
|-++|..|+|||+||+.+... . +..+ -+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~----~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--L----GRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--H----TCEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--h----hcceEEEEecccccccccee
Confidence 568999999999999998873 2 4333 356777777666554
No 215
>PRK13695 putative NTPase; Provisional
Probab=93.15 E-value=0.076 Score=50.01 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=24.6
Q ss_pred EEEEeccCCcchHHHHHHHhcccchhccCCceEEE
Q 003013 172 VISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWT 206 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv 206 (857)
.|+|.|.+|+|||||++.+++.... ..|....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4899999999999999999885332 234433343
No 216
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.13 E-value=0.087 Score=54.84 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.+||.|+.+..++..+.+. .+.-|-|.|-.|+||||+|+.+++-
T Consensus 16 f~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 456999999999888888554 5555669999999999999999874
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.13 E-value=0.18 Score=48.13 Aligned_cols=55 Identities=20% Similarity=0.201 Sum_probs=35.1
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCC--CHHHHHHHHHHHccCC
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF--DVFGVSKFILNSIAKD 228 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~--~~~~i~~~i~~~l~~~ 228 (857)
+||.++|..|+||||.+-.+....+.+ =..+..++. +.+ .-.+-.+..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~-D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISA-DTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE-STSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecC-CCCCccHHHHHHHHHHHhccc
Confidence 799999999999999988877643323 223444553 444 3444456667776654
No 218
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.10 E-value=0.06 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=19.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.|+|+|=|||||||+|..+.-.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 47999999999999998887664
No 219
>PRK13768 GTPase; Provisional
Probab=93.09 E-value=0.071 Score=53.50 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|+|.||+||||++..+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDW 25 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 68999999999999999887764
No 220
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.07 E-value=0.18 Score=57.49 Aligned_cols=76 Identities=20% Similarity=0.057 Sum_probs=49.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFI 221 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i 221 (857)
.++++|.++.++.+...+... . .+ -++|+.|+||||+|+.+.+..... .|...+++.-+. .+...+.+.+
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~------~-~~-ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~~-~~~~~~~~~v 86 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK------R-NV-LLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNPE-DPNMPRIVEV 86 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC------C-CE-EEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCCC-CCchHHHHHH
Confidence 356899999988888877532 2 34 499999999999999998742222 233333333222 2444557777
Q ss_pred HHHccC
Q 003013 222 LNSIAK 227 (857)
Q Consensus 222 ~~~l~~ 227 (857)
+..++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 766554
No 221
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.07 E-value=0.3 Score=52.98 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=20.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++|.++|.+|+||||++..+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999998887653
No 222
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.06 E-value=0.074 Score=46.32 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEeccCCcchHHHHHHHhccc
Q 003013 173 ISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~~ 194 (857)
|.|+|..|+|||||.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 223
>PRK13949 shikimate kinase; Provisional
Probab=93.03 E-value=0.067 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+||.|.||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 224
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.01 E-value=0.079 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.5
Q ss_pred CCCceEEEEeccCCcchHHHHHHHhc
Q 003013 167 DDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 167 ~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
|+++++|.+.|=|||||||+|-.+.-
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHH
Confidence 56889999999999999998776654
No 225
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=92.97 E-value=0.08 Score=51.47 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.2
Q ss_pred CCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 167 DDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 167 ~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++++|+++|.-|.|||||.+++...
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999998773
No 226
>PRK13947 shikimate kinase; Provisional
Probab=92.93 E-value=0.069 Score=50.18 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+||.|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998773
No 227
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.92 E-value=0.12 Score=45.89 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=32.2
Q ss_pred EEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHHHHHccCC
Q 003013 172 VISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAKD 228 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~~ 228 (857)
+|.|-|.+|.||||+|+.+.++.-.+ +| +-..+.++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~---------~v----saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK---------LV----SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc---------ee----eccHHHHHHHHHcCCC
Confidence 68999999999999999988742111 01 3356788888877654
No 228
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.87 E-value=0.11 Score=48.33 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=32.9
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+||.+..+.++++.+..-.. .+ .-|-|+|-.|+||+++|+.|++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 57888888888887765322 23 44559999999999999999994
No 229
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.81 E-value=0.17 Score=49.40 Aligned_cols=39 Identities=31% Similarity=0.481 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...++++.+.... .+..+|||-|.+|+||+||...+-..
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 5667788776543 26789999999999999999888774
No 230
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.81 E-value=0.066 Score=50.97 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
||.|.|+.|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998866
No 231
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=92.80 E-value=0.13 Score=49.06 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=36.9
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEE
Q 003013 146 YGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTC 207 (857)
Q Consensus 146 vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~ 207 (857)
..+...-...+++|. +..++.+.|..|.|||.||-+..-+.-..+.|+..+++.
T Consensus 3 ~p~~~~Q~~~~~al~--------~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--------NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp ---SHHHHHHHHHHH--------H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred cCCCHHHHHHHHHHH--------hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345566677777775 336999999999999999998877655567888888763
No 232
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.80 E-value=0.074 Score=44.25 Aligned_cols=22 Identities=50% Similarity=0.647 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998874
No 233
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=92.70 E-value=0.092 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.7
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|+|.|+.|+|||||...+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 799999999999999999974
No 234
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.65 E-value=0.094 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+|+|..|.||||||+.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3478999999999999999999884
No 235
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.65 E-value=0.32 Score=54.50 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=38.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.++.++.+..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999995431 3356789999999999999998664
No 236
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.64 E-value=0.14 Score=57.85 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=37.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+++||-+..++.+.+++..+ .-.+.+-++|..|+||||+|+.+.+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~-----rl~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQ-----RLHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999998543 2346789999999999999998854
No 237
>PRK09087 hypothetical protein; Validated
Probab=92.63 E-value=0.19 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-..+.|||..|+|||||++.+.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 366899999999999999988764
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=92.62 E-value=0.17 Score=50.13 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
.+..+.++..... ++...+-++|-+|+|||+||.+|.+....+ -..++++++
T Consensus 84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~ 135 (244)
T PRK07952 84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITV 135 (244)
T ss_pred HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEH
Confidence 4445555553221 134578899999999999999999953322 234455543
No 239
>PRK06620 hypothetical protein; Validated
Probab=92.60 E-value=0.25 Score=48.08 Aligned_cols=50 Identities=16% Similarity=0.113 Sum_probs=31.5
Q ss_pred cCCeeecc-hh-HHHHHHHHHhcCCCCCCCC-ceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGR-EK-EKEEIIELLLNDDLRADDG-FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~-~~-~~~~i~~~L~~~~~~~~~~-~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++-+||. .+ .+..+..|-.. + +... ...+-|||..|+|||+|++.+.+.
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~--~-~~~~~~~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCG--F-GVNPYKFTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHc--c-ccCCCcceEEEECCCCCCHHHHHHHHHhc
Confidence 35557787 32 34444444311 1 1111 256899999999999999998774
No 240
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.59 E-value=0.079 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=19.4
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|.|.|+.|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4779999999999999998774
No 241
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.58 E-value=0.085 Score=48.51 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|+|+.|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998763
No 242
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.57 E-value=0.12 Score=59.97 Aligned_cols=45 Identities=33% Similarity=0.394 Sum_probs=36.9
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++||+.+.++++..|.... . .-+-++|..|+|||++|+.+...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~-----~-~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR-----K-NNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC-----C-CCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999996632 2 33358999999999999999873
No 243
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.55 E-value=0.14 Score=56.21 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=23.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++.+|||.|..|.||||||+.+...
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhh
Confidence 6899999999999999999999763
No 244
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=92.54 E-value=0.1 Score=50.95 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=26.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCC
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF 212 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~ 212 (857)
+.|+|||=|||||+|.+..+--. ....-..|.-|=...+.
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaa--la~~G~kVl~iGCDPK~ 40 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAA--LAEMGKKVLQIGCDPKA 40 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEEESSSS
T ss_pred CeEEEEcCCCcccChhhhHHHHH--HHhccceeeEecccCCC
Confidence 47999999999999999987653 22222345555444433
No 245
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.51 E-value=0.14 Score=47.04 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhccc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
-.+|.|.|..|+||+||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999963
No 246
>PLN02348 phosphoribulokinase
Probab=92.47 E-value=0.098 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.6
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..-+|||.|..|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999874
No 247
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.46 E-value=0.098 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|+|+.|.|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999774
No 248
>PRK12608 transcription termination factor Rho; Provisional
Probab=92.43 E-value=0.36 Score=50.36 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhc-cCCc-eEEEEeCCCC-CHHHHHHHHHHHccC
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQR-HYEI-KAWTCVSEDF-DVFGVSKFILNSIAK 227 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~-~Fd~-~~wv~vs~~~-~~~~i~~~i~~~l~~ 227 (857)
...++++.+..-. .-..++|+|..|+|||||++.+.+. +.. +=|. ++|+.+.+.. ++..+++.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 3455778775321 3357799999999999999998883 322 2244 4777787654 688888988876664
Q ss_pred C
Q 003013 228 D 228 (857)
Q Consensus 228 ~ 228 (857)
.
T Consensus 192 s 192 (380)
T PRK12608 192 S 192 (380)
T ss_pred e
Confidence 4
No 249
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.42 E-value=0.12 Score=43.30 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.1
Q ss_pred ceEEEEeccCCcchHHHHHHHh
Q 003013 170 FSVISINGMAGVGKTTLAQLVY 191 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~ 191 (857)
-..++|.|..|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4789999999999999999976
No 250
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.39 E-value=0.016 Score=49.84 Aligned_cols=80 Identities=13% Similarity=0.092 Sum_probs=52.1
Q ss_pred CCeEEecCCCCcccc-cccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCCCcccCCCCCCccccCce
Q 003013 718 LKSLKVHDLKISKAL-LEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPDLECLSSIGENLTSLKTL 792 (857)
Q Consensus 718 L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L 792 (857)
+..+++++|+....- ....+.....|...+|++ +.+..||+ .++.++.|.+++ +.+.++|.....++.|+.|
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc--chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhc
Confidence 344555666543210 111234455666677776 56666666 466778888887 7888888777888899999
Q ss_pred eccCCCCC
Q 003013 793 RLSYCRKL 800 (857)
Q Consensus 793 ~l~~c~~l 800 (857)
+++.+|..
T Consensus 106 Nl~~N~l~ 113 (177)
T KOG4579|consen 106 NLRFNPLN 113 (177)
T ss_pred ccccCccc
Confidence 99888543
No 251
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.37 E-value=0.15 Score=56.29 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-+++||.+..++.+...+..+ .-.+-+-++|..|+||||+|+.+.+.
T Consensus 20 f~dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999888877543 23467889999999999999999874
No 252
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.37 E-value=0.093 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.0
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++|+|.|=||+||||++..+.-
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 4799999999999998877655
No 253
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.37 E-value=0.1 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|.|+|+.|.||||+|+.+.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 356999999999999999999874
No 254
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.36 E-value=0.11 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+|.|.|++|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998874
No 255
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.36 E-value=0.087 Score=47.79 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|++.|.||+||||+++.+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999988763
No 256
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=92.35 E-value=0.16 Score=57.53 Aligned_cols=47 Identities=30% Similarity=0.318 Sum_probs=38.3
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.+..++.+...+..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 f~divGQe~vv~~L~~~l~~~-----rl~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLG-----RLHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999998543 12355789999999999999998774
No 257
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.35 E-value=0.23 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|+|.+|+||||+|..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998763
No 258
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.33 E-value=0.62 Score=41.11 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=26.6
Q ss_pred CCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCcc
Q 003013 668 STKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLR 744 (857)
Q Consensus 668 ~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 744 (857)
+++|+.+.+.. .++.++. .+.++++|+.+.+.+. +..++.. ..+++|+.+.+.+ .+..+....+..+++|+
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTEC
T ss_pred CCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--ccccccccccccccccc
Confidence 34555555542 2333332 3445555666655442 4444432 1123445555533 22222233344444555
Q ss_pred EeEEc
Q 003013 745 KLEIW 749 (857)
Q Consensus 745 ~L~l~ 749 (857)
.+.+.
T Consensus 85 ~i~~~ 89 (129)
T PF13306_consen 85 NIDIP 89 (129)
T ss_dssp EEEET
T ss_pred ccccC
Confidence 44443
No 259
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.32 E-value=0.18 Score=54.08 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=38.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.++.++.+.+++..+. -.+.+-++|..|+||||+|+.+...
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999995432 3457789999999999999888663
No 260
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.32 E-value=0.18 Score=51.05 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=22.4
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.++|.++|.+|+||||++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999998888763
No 261
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.30 E-value=0.2 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=24.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEE
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWT 206 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv 206 (857)
.||=|.|..|.||||||+++... ....-..+.++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~--L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR--LFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH--HHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEe
Confidence 58889999999999999999884 33333334444
No 262
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.30 E-value=0.22 Score=51.26 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=30.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHH
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
.++|-+.|.|||||||+|-+..- +.......+.-|++-...++..+..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 37889999999999999988443 2333334455554444444444443
No 263
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.29 E-value=0.15 Score=49.83 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=30.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
.-.+.|+|..|.|||||++.+.. ...+.|+.+.+++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 35789999999999999999987 46677877766654
No 264
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.29 E-value=0.11 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+|||.|+-|.||||.|+..-+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999997654
No 265
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.29 E-value=0.095 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=19.7
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|+|..|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999873
No 266
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.27 E-value=0.18 Score=56.62 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.+..++.+...+... ...-|-|+|..|+||||+|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999998877543 2245578999999999999999874
No 267
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.16 Score=57.48 Aligned_cols=47 Identities=28% Similarity=0.235 Sum_probs=38.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.+..++.+.+++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~-----ri~ha~Lf~Gp~GvGKttlA~~lAk~ 61 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMD-----RVGHGYIFSGLRGVGKTTAARVFAKA 61 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999988543 13456889999999999999887664
No 268
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=92.25 E-value=0.1 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|+++|.+|+|||||++.+..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998764
No 269
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.24 E-value=0.11 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=21.4
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|+|..|.|||||++.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 68999999999999999999884
No 270
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.22 E-value=0.16 Score=54.67 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.+...+.+..++..+. -.+.+-+||..|+||||+|+.+.+.
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999995431 3458889999999999999998663
No 271
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.22 E-value=0.11 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|-+.|+.|.||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998763
No 272
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.22 E-value=0.24 Score=56.29 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=55.8
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFI 221 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i 221 (857)
.++++|.++.++.+..++... +.+-|+|..|.||||+|+.+.... -..+|+...|..-+.+ +...+.+.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~~-~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPED-PNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCCc-chHHHHHHH
Confidence 355899999999888877432 368899999999999999988742 2334678888666443 666777777
Q ss_pred HHHccC
Q 003013 222 LNSIAK 227 (857)
Q Consensus 222 ~~~l~~ 227 (857)
+..++.
T Consensus 100 ~~~~G~ 105 (637)
T PRK13765 100 PAGKGK 105 (637)
T ss_pred HHhcCH
Confidence 765554
No 273
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.22 E-value=0.11 Score=52.45 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.7
Q ss_pred eEEEEeccCCcchHHHHHHHhccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
++|+|+|.+|.|||||+..+....
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998843
No 274
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.21 E-value=0.096 Score=47.60 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=23.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQR 198 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~ 198 (857)
.+|++|+|.-|.|||||...+-...+.+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 37999999999999999999977443333
No 275
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.21 E-value=0.17 Score=56.83 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=38.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.+..++.+.+++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 12 f~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999543 23456789999999999999998764
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.19 E-value=0.14 Score=47.57 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=27.1
Q ss_pred EEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC
Q 003013 172 VISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED 211 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~ 211 (857)
++.|+|..|.||||+|+.+.... ...-..++|+.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcc
Confidence 47899999999999999997742 222344566665444
No 277
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.19 E-value=0.21 Score=49.47 Aligned_cols=65 Identities=23% Similarity=0.185 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHH
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKF 220 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~ 220 (857)
..+++..+..... +..+|||-|.+|+||+||.-.+-.......+==.++=|.-|..|.--.|..+
T Consensus 37 a~~ll~~l~p~tG----~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 37 ARELLRALYPRTG----NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHHhhcCC----CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4577777766443 7889999999999999999887765444443223344555666644444443
No 278
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.18 E-value=0.1 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+|=|||||||+|-.+.--
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~ 24 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAA 24 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999998877553
No 279
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.18 E-value=0.016 Score=53.39 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=40.8
Q ss_pred CCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCC-----CCCCCCCCCCCeEecCCCCCCcccCCCC-CCccccCc
Q 003013 718 LKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDL-----VSPPPFPASLTELWISFMPDLECLSSIG-ENLTSLKT 791 (857)
Q Consensus 718 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l-----~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~ 791 (857)
++.++-+++.....-.+ .+..++.++.|.+.+ |..+ +.+....++|+.|++++|+++++--... ..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~-ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLE-HLRDLRSIKSLSLAN-CKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHH-HHhccchhhhheecc-ccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 44444444444332222 344455555555555 4432 2233345666666666677666543222 56667777
Q ss_pred eeccCCCC
Q 003013 792 LRLSYCRK 799 (857)
Q Consensus 792 L~l~~c~~ 799 (857)
|.+++.+-
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 76665543
No 280
>PRK13975 thymidylate kinase; Provisional
Probab=92.17 E-value=0.11 Score=50.10 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=21.1
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999884
No 281
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.15 E-value=0.24 Score=49.04 Aligned_cols=49 Identities=18% Similarity=0.077 Sum_probs=35.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccC------CceEEEEeCCCCCHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHY------EIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F------d~~~wv~vs~~~~~~~i~~ 219 (857)
.-.++.|+|..|.||||||.++.-.. ...- ..++|+.....++..++.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 56799999999999999999886532 1122 4578888777777666543
No 282
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=92.09 E-value=0.24 Score=45.71 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=30.2
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 147 GREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 147 G~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.++-.+.|.+++... .+..-..|+++|+.|+||+||...+..+
T Consensus 82 ~~~~L~~~l~~~~~~~---~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---SDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred cHHHHHHHHHHHHhhh---ccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 4555556665554221 1123467899999999999999999875
No 283
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.09 E-value=0.13 Score=49.78 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
....|.|.|..|+|||||++.+.+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 668899999999999999999976
No 284
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.24 Score=47.23 Aligned_cols=55 Identities=31% Similarity=0.242 Sum_probs=38.8
Q ss_pred cccCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.-.++-|.|-.+++|.+...-.-.. +=+..+=+-.||.+|.|||.||++|.|+
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 344466889998888887775321100 1123456778999999999999999994
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.06 E-value=0.22 Score=51.59 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+++.+.... .+..+|||.|..|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~----~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHT----GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcC----CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666664322 36789999999999999999987763
No 286
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.03 E-value=0.12 Score=49.64 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.++||+|-.|.|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 447899999999999999999855
No 287
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.98 E-value=0.093 Score=48.81 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=18.7
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|+|..|.||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999998774
No 288
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=91.96 E-value=0.3 Score=47.97 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=30.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCC
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD 213 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~ 213 (857)
.-.++.|.|.+|+||||+|.++... ....=..++|+.....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5689999999999999999998763 222223567776554444
No 289
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=91.92 E-value=0.18 Score=56.94 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=39.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.+..++.+.+++..+ .-.+-+-++|..|+||||+|+.+.+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~g-----ri~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETG-----RIAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999543 23457889999999999999998774
No 290
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.90 E-value=0.18 Score=52.12 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.2
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+|+|.|.+|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999998764
No 291
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=91.90 E-value=0.16 Score=52.73 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=35.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-++++|.++.++.+.-.+... +..-+-+.|..|+||||+|+.+-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~------~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDP------GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhcc------CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 456899999998887665433 334588999999999999998865
No 292
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=91.88 E-value=0.1 Score=49.29 Aligned_cols=21 Identities=38% Similarity=0.680 Sum_probs=19.3
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|||.|+.|.||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 293
>PRK13946 shikimate kinase; Provisional
Probab=91.87 E-value=0.12 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-+.|.+.||.|.||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999874
No 294
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.84 E-value=0.45 Score=50.12 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+++|..|+||||++..+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999874
No 295
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.83 E-value=0.43 Score=48.31 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHH
Q 003013 149 EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVS 218 (857)
Q Consensus 149 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~ 218 (857)
..-.+++..++..+ .-|-++|..|+||||+|+.+.. ... ...++++.+.+.+..++.
T Consensus 8 ~~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 44556667766432 3456899999999999999976 222 133455666655554443
No 296
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.80 E-value=0.15 Score=45.23 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.|-++|..|.|||||++.+...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46889999999999999999885
No 297
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.80 E-value=0.12 Score=52.95 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+|=|||||||+|..+.--
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~ 24 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAA 24 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999998887663
No 298
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=91.79 E-value=0.13 Score=48.36 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|+|+|.+|+|||||+..+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998775
No 299
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.25 Score=50.56 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=39.7
Q ss_pred CccccCCeeecchhHHHHHHHHHhcCCCC------CCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 137 PSLVNEAKVYGREKEKEEIIELLLNDDLR------ADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 137 ~~~~~~~~~vG~~~~~~~i~~~L~~~~~~------~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+.+..++|.|..+.++-+.++..-.=+= --..-+-|-.+|.+|.|||.|||+|+-
T Consensus 206 np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvAT 267 (491)
T KOG0738|consen 206 NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVAT 267 (491)
T ss_pred CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHH
Confidence 34456678889888888777776432100 001346678899999999999999998
No 300
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.69 E-value=0.22 Score=50.51 Aligned_cols=43 Identities=28% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCC
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF 212 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~ 212 (857)
+.-+++-|+|..|.|||++|.+... +..+..+.++||+..+.+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCCH
Confidence 3668999999999999999988777 455558999999987743
No 301
>PRK14530 adenylate kinase; Provisional
Probab=91.66 E-value=0.13 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.4
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|.|+|+.|.||||+|+.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998866
No 302
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.63 E-value=0.52 Score=51.02 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=23.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhccc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
...+|.++|..|+||||+|..+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999988743
No 303
>PRK08116 hypothetical protein; Validated
Probab=91.60 E-value=0.13 Score=52.06 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=26.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
..+-+||-.|+|||+||.+|++... +.--.++++++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEH
Confidence 3588999999999999999999532 22234455553
No 304
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.58 E-value=0.17 Score=52.45 Aligned_cols=25 Identities=36% Similarity=0.365 Sum_probs=22.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..+|+++|..|+||||++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999998774
No 305
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.57 E-value=0.13 Score=44.89 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...-|-|.|-+|+||||+|.+|..
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHH
Confidence 345688999999999999998865
No 306
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.54 E-value=1.2 Score=39.22 Aligned_cols=101 Identities=18% Similarity=0.254 Sum_probs=50.3
Q ss_pred CCCCCCCCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCCC--CCC
Q 003013 641 LHNLHHLQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPEDG--FPT 716 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~ 716 (857)
+.++++|+.+.+.. .++.++.. +..+++|+.+.+.+ .+..++. .+.++++|+.+.+.+ .+..++... ..+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccc
Confidence 45566777777763 45566554 33455788888765 2555544 456676788888854 345555442 247
Q ss_pred CCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 717 NLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 717 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
+|+.+.+..+ +..+....+.++ +|+.+.+.+
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 7888887543 445555556666 777777654
No 307
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.54 E-value=0.14 Score=44.03 Aligned_cols=21 Identities=52% Similarity=0.733 Sum_probs=19.3
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.+.|.||+||||++..+...
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999874
No 308
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.50 E-value=0.3 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+|+|.+|+||||++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999888763
No 309
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.50 E-value=0.13 Score=55.08 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.8
Q ss_pred CCceEEEEeccCCcchHHHHHHHhc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-++.|+|+|..|.||||||+++.+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999998876
No 310
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.49 E-value=0.13 Score=52.53 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|.|=||+||||+|..+..-
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~ 24 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAA 24 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHH
Confidence 57899999999999998887664
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.49 E-value=0.58 Score=48.91 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCH--HHHHHHHHHHccCCCCCCCCChHHHHHHHH
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV--FGVSKFILNSIAKDQSNNDDDLNSLQVKLK 244 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~--~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~ 244 (857)
...++|+|+|..|+||||++..+......+ . ..+.+++. +.+-. ..-.+..++.++.... ...+...+...+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~-g-~~V~lIta-DtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~ 278 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQ-N-RTVGFITT-DTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQ 278 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CeEEEEeC-CccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHH
Confidence 356899999999999999999887643222 1 23444443 33322 3333444444443222 2344555544443
No 312
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.48 E-value=0.13 Score=46.92 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
||.|+|..|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999988773
No 313
>PRK13948 shikimate kinase; Provisional
Probab=91.48 E-value=0.16 Score=47.77 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.++||.|.||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998773
No 314
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=91.48 E-value=0.16 Score=46.50 Aligned_cols=23 Identities=39% Similarity=0.536 Sum_probs=21.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+|..|.|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 315
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.40 E-value=0.15 Score=47.89 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|.|..|.||||+++.+..-
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999884
No 316
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.40 E-value=0.6 Score=52.37 Aligned_cols=58 Identities=29% Similarity=0.204 Sum_probs=44.0
Q ss_pred CCccccCCeeecchhHHHHHHHHHhcCC------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 136 TPSLVNEAKVYGREKEKEEIIELLLNDD------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 136 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+.+..+++-|.++.+.+|.+-+--.= +++-.+.+=|-.||.+|.|||-+||+|.-.
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE 728 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE 728 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh
Confidence 4566778899999999999998763310 002234567889999999999999999773
No 317
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=91.40 E-value=0.38 Score=46.42 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.4
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|.|.|+-|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 318
>PLN02796 D-glycerate 3-kinase
Probab=91.37 E-value=0.17 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.270 Sum_probs=22.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-+|||.|..|.||||||+.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999999874
No 319
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=91.35 E-value=0.18 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+-..|+|+|..|+|||||++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3466999999999999999999874
No 320
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.33 E-value=0.31 Score=46.52 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=38.9
Q ss_pred cccCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++-.+++|.|..++.+++--..=- .+....-|-.||.-|.||+.|+|++.+.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e 108 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE 108 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH
Confidence 3455679999999888876432200 2234556789999999999999999994
No 321
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.30 E-value=0.21 Score=47.46 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=27.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEE
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTC 207 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~ 207 (857)
.++|-|+|..|+|||||++.+.. .....|-.+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36899999999999999999988 4555564444433
No 322
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.29 E-value=0.15 Score=47.86 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|-|.|.+|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999885
No 323
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.27 E-value=0.14 Score=47.69 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=16.9
Q ss_pred EEEeccCCcchHHHHHHHhc
Q 003013 173 ISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~ 192 (857)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999886
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.25 E-value=0.33 Score=52.85 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+-|||..|+|||+||+++.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~ 159 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE 159 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356889999999999999999995
No 325
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.19 E-value=0.16 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.8
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..|.|+|+.|.||||+|+.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999877
No 326
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.18 E-value=0.18 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|.-|.|||||.+.+..-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4479999999999999999999883
No 327
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.15 E-value=0.16 Score=47.60 Aligned_cols=21 Identities=43% Similarity=0.752 Sum_probs=19.7
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|+|.|..|.||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999876
No 328
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.13 E-value=0.12 Score=26.96 Aligned_cols=16 Identities=50% Similarity=0.594 Sum_probs=6.9
Q ss_pred ccCceeccCCCCCCCCC
Q 003013 788 SLKTLRLSYCRKLTYFS 804 (857)
Q Consensus 788 ~L~~L~l~~c~~l~~ip 804 (857)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45666666663 55443
No 329
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.11 E-value=0.12 Score=51.12 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=17.3
Q ss_pred EeccCCcchHHHHHHHhccc
Q 003013 175 INGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 175 I~GmgGvGKTTLa~~v~~~~ 194 (857)
|+||+|.||||+++.+.+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~ 20 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL 20 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHH
Confidence 68999999999999998853
No 330
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=91.08 E-value=0.16 Score=52.09 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.5
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++|+|.|=|||||||+|..+.-
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6899999999999999987655
No 331
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.04 E-value=0.17 Score=49.49 Aligned_cols=23 Identities=43% Similarity=0.447 Sum_probs=19.5
Q ss_pred eEEEEecc-CCcchHHHHHHHhcc
Q 003013 171 SVISINGM-AGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~Gm-gGvGKTTLa~~v~~~ 193 (857)
++|+|+|. ||+||||++-.+.--
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~a 25 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWA 25 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHH
Confidence 68999997 679999999888763
No 332
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.01 E-value=0.25 Score=52.89 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=38.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCC----CCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLR----ADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~----~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.++|+|.+..++.+.+++..+... ...-.+-+-++|..|+||||+|+.+.+
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 356999999999999999654200 000246688999999999999998865
No 333
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=91.00 E-value=0.17 Score=48.32 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|||.||.|.||+|.|+.+-.
T Consensus 2 iI~i~G~~gsGKstva~~~~~ 22 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFIIE 22 (227)
T ss_pred EEEEeCCCCCCHHHHHHHHHh
Confidence 799999999999999998744
No 334
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=90.98 E-value=0.16 Score=52.04 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.1
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++|+|+|=|||||||+|-.+.-
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~ 23 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVA 23 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHH
Confidence 5899999999999998877655
No 335
>PRK04182 cytidylate kinase; Provisional
Probab=90.96 E-value=0.17 Score=47.96 Aligned_cols=22 Identities=45% Similarity=0.744 Sum_probs=20.4
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|.|.|+.|.||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 336
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.96 E-value=0.34 Score=57.85 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=38.9
Q ss_pred CeeecchhHHHHHHHHHhcCC---CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDD---LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~---~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.+...+.|...+.... ...+....++.++|..|+||||+|+.+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999888886421 002233468899999999999999999873
No 337
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.90 E-value=0.16 Score=51.76 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.1
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|+|.|=|||||||+|-.+.-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~ 22 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSV 22 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHH
Confidence 689999999999998877655
No 338
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=90.90 E-value=0.17 Score=46.73 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|+|..|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 339
>PRK14974 cell division protein FtsY; Provisional
Probab=90.88 E-value=0.2 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.263 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..+|+++|+.|+||||++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999988877763
No 340
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=90.87 E-value=0.2 Score=56.09 Aligned_cols=54 Identities=31% Similarity=0.364 Sum_probs=36.7
Q ss_pred cccCCeeecchhHHHHHHHHHh---cCC----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLL---NDD----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~---~~~----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.-++++|.++.++++.+++. ... . +..-.+-+-++|..|+|||++|+.+.+.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKL-GAKIPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhc-CCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3445679999888776655443 110 0 1122345789999999999999999874
No 341
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=90.86 E-value=0.92 Score=48.87 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.8
Q ss_pred eEEEEeccCCcchHHHHHHHhccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
..|+++|..|+||+||.|.++-+.
T Consensus 417 srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 417 SRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cceeEecCCCCchhhhHHHHhhcc
Confidence 578999999999999999999874
No 342
>PLN02924 thymidylate kinase
Probab=90.85 E-value=0.59 Score=45.64 Aligned_cols=54 Identities=15% Similarity=0.114 Sum_probs=34.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFILN 223 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~~ 223 (857)
.-..|.|-|.-|.||||+|+.+.+..+.+ .+....+-.......+.+..++++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 45689999999999999999998854433 3444333222223345555555554
No 343
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=90.81 E-value=0.49 Score=47.53 Aligned_cols=51 Identities=22% Similarity=0.170 Sum_probs=40.7
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHH
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKF 220 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~ 220 (857)
+.-.++-|+|..|.||||+|.++.-. .+..-..++|+.--..++.+++..-
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l 108 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQL 108 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 46789999999999999999997764 3333448899999888988876543
No 344
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=90.81 E-value=0.18 Score=46.55 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|+|+|..|+|||||++.+.+.
T Consensus 2 i~iiG~~~~GKssli~~~~~~ 22 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLG 22 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcC
Confidence 789999999999999999875
No 345
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.79 E-value=0.37 Score=49.69 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=38.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeC
Q 003013 147 GREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS 209 (857)
Q Consensus 147 G~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs 209 (857)
++....+.+.+++..-. .+....-+-|+|..|+|||.||.++.+... +.. -.+.+++++
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g-~~v~~~~~~ 193 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA-KKG-VSSTLLHFP 193 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcC-CCEEEEEHH
Confidence 55555666666664321 122346788999999999999999999633 222 345666664
No 346
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.78 E-value=0.19 Score=54.10 Aligned_cols=50 Identities=30% Similarity=0.305 Sum_probs=35.3
Q ss_pred CeeecchhHHHHHHHHHhcC------CCC----CCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 143 AKVYGREKEKEEIIELLLND------DLR----ADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~------~~~----~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+||.++.++.+...+... ... ..-.-.-|-++|..|+||||+|+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 35999999999886665321 000 001235688999999999999999976
No 347
>PRK08356 hypothetical protein; Provisional
Probab=90.77 E-value=0.23 Score=47.76 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=19.0
Q ss_pred eEEEEeccCCcchHHHHHHH
Q 003013 171 SVISINGMAGVGKTTLAQLV 190 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v 190 (857)
.+|+|.|+.|.||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998
No 348
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=90.77 E-value=0.18 Score=46.64 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 349
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.74 E-value=0.18 Score=46.83 Aligned_cols=21 Identities=52% Similarity=0.691 Sum_probs=18.3
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|-|..|+|||||++.+.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 678999999999999999884
No 350
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=90.71 E-value=0.17 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+|=||+||||+|..+..-
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~ 23 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHM 23 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999888764
No 351
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.70 E-value=0.19 Score=47.22 Aligned_cols=23 Identities=43% Similarity=0.494 Sum_probs=20.4
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++.+.|++|.||||++..+...
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988774
No 352
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.70 E-value=0.24 Score=58.44 Aligned_cols=53 Identities=30% Similarity=0.335 Sum_probs=38.9
Q ss_pred ccCCeeecchhHHHHHHHHHhcC--------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLND--------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..+++.|.++.+++|.+++... .. +-...+-|-++|..|+||||||+.+.+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~-gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHL-GIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc-CCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 44556899999999988876421 00 0123356889999999999999999884
No 353
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.64 E-value=0.23 Score=47.44 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|+|+|..|.|||||.+.+..
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 447999999999999999999987
No 354
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.62 E-value=0.19 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|+|.+|+|||||++.+.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 355
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.62 E-value=0.19 Score=46.83 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.++|.+|+|||||+..+.++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998775
No 356
>PLN02200 adenylate kinase family protein
Probab=90.62 E-value=0.22 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=21.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|.|+.|.||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 357
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.61 E-value=0.2 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|.+|+|||||++.+.+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 358
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.61 E-value=0.2 Score=47.34 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|..|.|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999863
No 359
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.57 E-value=0.19 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 360
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=90.56 E-value=0.44 Score=49.86 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=40.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccC----CceEEEEeCCCCCHHHHHHHHHHHc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHY----EIKAWTCVSEDFDVFGVSKFILNSI 225 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F----d~~~wv~vs~~~~~~~i~~~i~~~l 225 (857)
.-.++-|+|..|+|||++|.++.-.......+ ..++|++.-..|+..++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 56899999999999999999886532221111 4789999988888877654 34443
No 361
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=90.54 E-value=0.25 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..-+|||.|.-|.|||||++.+..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999865
No 362
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.52 E-value=0.22 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
. .+++|+|..|.|||||++.+..-
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCC
Confidence 6 89999999999999999999874
No 363
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=0.31 Score=55.65 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=38.3
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.+..++.+..++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~-----~i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEG-----RVAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhC-----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999988543 13456789999999999999998764
No 364
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=90.52 E-value=0.17 Score=47.77 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=19.3
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+.|+|||-|||||+|.++.+--
T Consensus 2 r~iAiYGKGGIGKSTts~N~aA 23 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAA 23 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHH
Confidence 5799999999999999887654
No 365
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.51 E-value=0.17 Score=51.34 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=19.6
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|||.|..|.||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 366
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.51 E-value=0.2 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 367
>PRK14527 adenylate kinase; Provisional
Probab=90.51 E-value=0.22 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|.|.+|.||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998763
No 368
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.51 E-value=0.43 Score=50.24 Aligned_cols=48 Identities=21% Similarity=0.374 Sum_probs=39.6
Q ss_pred cCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|-++..+.+...+..+ .-.+.+-|+|.-|+||||+|..+...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~g-----rl~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREG-----KLHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcC-----CCCeeEeeECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999543 24567899999999999999988763
No 369
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=0.035 Score=51.28 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=36.5
Q ss_pred cCCCCCCccEEeecCCCCCcccCC---CCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 688 CMHNLTSLLNLEIRRCPSVVSFPE---DGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 688 ~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
.+.++++++.|.+.+|..+...-- .+..++|+.|+|++|+.+++..-..+..+++|+.|.|.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 344566666666666655433211 124467777777777665544333455667777777765
No 370
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.50 E-value=0.16 Score=28.59 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=8.1
Q ss_pred cceEeeccccCcccCccc
Q 003013 671 LTELSIRECENLKALPNC 688 (857)
Q Consensus 671 L~~L~l~~c~~l~~l~~~ 688 (857)
|++|++++| .++.+|.+
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 455555554 34444443
No 371
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.49 E-value=0.2 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=20.9
Q ss_pred eEEEEeccCCcchHHHHHHHhccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.-|+|+|..|+|||||+..+....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 372
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=90.47 E-value=0.2 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.6
Q ss_pred eEEEEeccCCcchHHHHHHHhcccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDR 195 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~ 195 (857)
++|+|.|=||+||||+|..+.....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La 27 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYS 27 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 6899999999999999999877533
No 373
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.47 E-value=0.35 Score=49.85 Aligned_cols=45 Identities=27% Similarity=0.228 Sum_probs=34.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 215 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~ 215 (857)
.-+++-|+|..|+||||||.++.-. ....-..++|+..-..++..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV 98 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH
Confidence 5679999999999999999987653 23334567888877766653
No 374
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=90.46 E-value=0.52 Score=49.17 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=43.0
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchh----ccCCceEEEEeCCCCCHHHHHHHHHHHccC
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQ----RHYEIKAWTCVSEDFDVFGVSKFILNSIAK 227 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~----~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~ 227 (857)
+.-.++-|+|..|+|||+|+.++.-..... ..=..++|+.--..|+.+++.+ |+++++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 356899999999999999998875322221 1224789999999999888765 5665543
No 375
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=90.45 E-value=0.13 Score=28.93 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=10.3
Q ss_pred ceEEEccCCCCCCcchhhhC
Q 003013 389 LRFLELSYCQGLTKLPQALL 408 (857)
Q Consensus 389 L~~L~L~~~~~l~~lp~~~~ 408 (857)
|++|+|++| .++.+|.+++
T Consensus 2 L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSS-EESEEGTTTT
T ss_pred ccEEECCCC-cCEeCChhhc
Confidence 556666665 3445555443
No 376
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=90.43 E-value=0.19 Score=48.70 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=18.3
Q ss_pred EEEEeccCCcchHHHHHHHh
Q 003013 172 VISINGMAGVGKTTLAQLVY 191 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~ 191 (857)
.|||+|..|.|||||++++-
T Consensus 2 ~i~~~g~~~~GKttL~~~l~ 21 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALS 21 (203)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999983
No 377
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=90.43 E-value=0.2 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-...++|||..|.|||.+|++|++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999995
No 378
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.43 E-value=0.33 Score=53.60 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=38.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+++|.+...+.+..++..+. -.+.+-++|..|+||||+|+.+...
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999995431 3456778999999999999987663
No 379
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.42 E-value=0.21 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999864
No 380
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.42 E-value=0.21 Score=48.81 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|..|.|||||++.+..-
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999999874
No 381
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=90.39 E-value=0.32 Score=48.30 Aligned_cols=65 Identities=17% Similarity=0.166 Sum_probs=50.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEE-EEeCCCC
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAW-TCVSEDF 212 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~w-v~vs~~~ 212 (857)
.++++|.++.+.-+.+.+.. ......-.||..|.|||+-|.+.....-..+.|.+++- .++|+.-
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder 100 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER 100 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc
Confidence 46799999999999999965 36788899999999999999887765444566766554 4555543
No 382
>PRK06761 hypothetical protein; Provisional
Probab=90.38 E-value=0.38 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.9
Q ss_pred eEEEEeccCCcchHHHHHHHhccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.+|.|.|..|.||||+|+.+.+..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999999854
No 383
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=90.37 E-value=0.21 Score=45.93 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=19.4
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.++|..|+|||||+..+.+.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998775
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.36 E-value=1.1 Score=48.21 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+-.+|+++|..|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 385
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=90.36 E-value=0.52 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...-+-|||..|+|||+||+++.+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~ 171 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY 171 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999994
No 386
>PRK09183 transposase/IS protein; Provisional
Probab=90.36 E-value=0.2 Score=50.37 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=20.9
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-..+.|+|..|+||||||..+.+.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 356789999999999999999774
No 387
>PRK07429 phosphoribulokinase; Provisional
Probab=90.36 E-value=0.27 Score=51.06 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++.-+|||.|..|.||||+|+.+..-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 46789999999999999999998863
No 388
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=90.36 E-value=0.21 Score=47.87 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|+|+|.+|+|||||++.+.++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3456699999999999999998774
No 389
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=90.35 E-value=0.27 Score=52.63 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-+|+|+|..|.|||||+..+...
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~ 28 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRR 28 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999884
No 390
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=90.33 E-value=0.21 Score=45.06 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|.+|+|||||+..+.+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4789999999999999998764
No 391
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=90.31 E-value=0.25 Score=52.86 Aligned_cols=50 Identities=32% Similarity=0.396 Sum_probs=36.4
Q ss_pred CCeeecchhHHHHHHHHHhc---------CCCCCCC----CceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLN---------DDLRADD----GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~---------~~~~~~~----~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+..+||.++.++.+...+.. ... .++ .-..|-++|..|+|||++|+.+..
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~-~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK-SDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccc-cccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 34589999999988776621 110 111 135789999999999999999986
No 392
>PRK08181 transposase; Validated
Probab=90.31 E-value=0.18 Score=50.63 Aligned_cols=36 Identities=19% Similarity=0.048 Sum_probs=26.3
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
.-+-++|..|+|||.||.++.+.. ....-.++|+.+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeH
Confidence 458999999999999999998843 222334555554
No 393
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.2 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=28.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchh--ccCCceEEEEe
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQ--RHYEIKAWTCV 208 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~--~~Fd~~~wv~v 208 (857)
-++|-++|++|.|||+|+|++.+...++ ..+-....+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3688999999999999999999975443 33444444444
No 394
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.29 E-value=0.35 Score=52.98 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=38.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.+..++.+..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999995431 2366889999999999999988663
No 395
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=90.26 E-value=0.24 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+|++.|..|+||||++.++...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998763
No 396
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=90.25 E-value=0.51 Score=49.24 Aligned_cols=57 Identities=11% Similarity=0.134 Sum_probs=40.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhcc----CCceEEEEeCCCCCHHHHHHHHHHHcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRH----YEIKAWTCVSEDFDVFGVSKFILNSIA 226 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~----Fd~~~wv~vs~~~~~~~i~~~i~~~l~ 226 (857)
.-.++-|+|..|+||||+|.++.-....... =..++|+..-..|+.+++.+ +++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 5689999999999999999988654332110 12789999888888887654 444443
No 397
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=90.25 E-value=0.21 Score=46.01 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|+|+|..|+|||||.+.+.+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999775
No 398
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.24 E-value=0.2 Score=52.05 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=27.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
.-+-+||..|+|||+||.+|.+....+ . -.|+++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g-~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-G-KSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-C-CeEEEEEH
Confidence 669999999999999999999953222 2 24556655
No 399
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=90.22 E-value=0.2 Score=42.32 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=17.6
Q ss_pred EEEEec-cCCcchHHHHHHHhcc
Q 003013 172 VISING-MAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~G-mgGvGKTTLa~~v~~~ 193 (857)
+|+|+| -||+||||+|..+..-
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~ 23 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAA 23 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHH
Confidence 467787 6799999999887653
No 400
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.21 E-value=0.26 Score=46.36 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDR 195 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~ 195 (857)
.-.|+.|+|..|.|||||.+.++.=..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 457999999999999999999987433
No 401
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=90.19 E-value=0.4 Score=45.60 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++++ ... ..-..|.|+|..|+|||||++.+..+
T Consensus 4 ~~~~~~~~-~~~----~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASL-GLW----NKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHh-ccc----cccCEEEEECCCCCCHHHHHHHHhcC
Confidence 35566644 211 13467889999999999999988764
No 402
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.16 E-value=0.22 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 403
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.16 E-value=0.25 Score=46.34 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|..|.|||||++.+..-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3469999999999999999999773
No 404
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.15 E-value=0.44 Score=51.07 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.++|..|+||||+|..+...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988763
No 405
>PLN02165 adenylate isopentenyltransferase
Probab=90.13 E-value=0.25 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4459999999999999999988774
No 406
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.12 E-value=0.34 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..|.|.|..|.||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998776
No 407
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.11 E-value=0.58 Score=48.05 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=33.0
Q ss_pred CCccccCCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 136 TPSLVNEAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 136 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+.++.+..+..+ ....|+.++... +-|-|.|..|+||||+|+.+..
T Consensus 39 ~~p~~d~~y~f~~~-~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~ 86 (327)
T TIGR01650 39 HVPDIDPAYLFDKA-TTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA 86 (327)
T ss_pred CCCCCCCCccCCHH-HHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence 34444444454444 345577777432 4589999999999999999977
No 408
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.08 E-value=0.4 Score=49.35 Aligned_cols=45 Identities=27% Similarity=0.241 Sum_probs=33.0
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCH
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV 214 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~ 214 (857)
+.-+++-|+|..|+||||||.++... ....=..++|+..-+.++.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 35689999999999999999887663 2223356778877666554
No 409
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=90.07 E-value=0.21 Score=46.60 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=18.7
Q ss_pred EEEeccCCcchHHHHHHHhc
Q 003013 173 ISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~ 192 (857)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 410
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=90.06 E-value=0.37 Score=54.18 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=39.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+++|.+..++.+..++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 f~diiGqe~iv~~L~~~i~~~-----~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESN-----KIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999543 23456889999999999999998774
No 411
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.03 E-value=0.27 Score=47.69 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-..|+|+|..|+|||||.+.|.-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446999999999999999999865
No 412
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=90.03 E-value=0.84 Score=41.55 Aligned_cols=77 Identities=19% Similarity=0.170 Sum_probs=45.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc------------ccch-hccCC------ceEEEEeCCCCCHHHHHHHHHHHccCCC
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN------------DDRV-QRHYE------IKAWTCVSEDFDVFGVSKFILNSIAKDQ 229 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~------------~~~~-~~~Fd------~~~wv~vs~~~~~~~i~~~i~~~l~~~~ 229 (857)
.-..++|.|-.|.||+|||+++.. |... .+.+. .-+|-.-+-.++.+-=..+|++.-..-.
T Consensus 38 ~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~ 117 (267)
T COG4167 38 EGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN 117 (267)
T ss_pred CCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhc
Confidence 346899999999999999999843 2111 01111 1123334445566655666665432221
Q ss_pred CCCCCChHHHHHHHHhhc
Q 003013 230 SNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 230 ~~~~~~~~~~~~~l~~~l 247 (857)
...+.+.+.+++.+-|
T Consensus 118 --T~~~~~~R~~~i~~TL 133 (267)
T COG4167 118 --TDLEPEQRRKQIFETL 133 (267)
T ss_pred --ccCChHHHHHHHHHHH
Confidence 4566777777777776
No 413
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.99 E-value=1.7 Score=46.08 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchh-ccCCceEEEEeCCCCCHHHHHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ-RHYEIKAWTCVSEDFDVFGVSKF 220 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~-~~Fd~~~wv~vs~~~~~~~i~~~ 220 (857)
.+.++||+.+++.+.+++...- +......+-|.|..|.|||.+...|+.+.... ..|.. +.+....--....|..+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~-v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVT-VYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhccccee-EEEeeccccchHHHHHH
Confidence 4569999999999999987632 23466788899999999999999999974332 22222 33322222345677777
Q ss_pred HHHHc
Q 003013 221 ILNSI 225 (857)
Q Consensus 221 i~~~l 225 (857)
|...+
T Consensus 226 I~~~~ 230 (529)
T KOG2227|consen 226 IFSSL 230 (529)
T ss_pred HHHHH
Confidence 77777
No 414
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.97 E-value=1.6 Score=50.34 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=42.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCC--HHHHHHHHHHHccCCCCCCCCChHHHHHHHHh
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFD--VFGVSKFILNSIAKDQSNNDDDLNSLQVKLKE 245 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~ 245 (857)
-.||+++|..|+||||++..+.......+.-..+..++ .+.+. ...-.+...+.++.... ...+.+.+...+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit-~Dt~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~ 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT-TDSFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec-CcccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH
Confidence 47999999999999999988877422111112333333 33343 33334455555554333 33456666555553
No 415
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=89.96 E-value=0.29 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-|.|+|.+|+|||||+..+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 367899999999999999988653
No 416
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=89.95 E-value=0.24 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|.+|+|||||++.+.++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998875
No 417
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=89.95 E-value=0.23 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.8
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++|-+.|-|||||||+|-+..-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5788999999999999976654
No 418
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=89.95 E-value=0.44 Score=47.40 Aligned_cols=52 Identities=17% Similarity=0.111 Sum_probs=32.5
Q ss_pred EEEEeccCCcchHHHHHHHhcccc-----hhccCCceEEEEeCCCCCHHHHHHHHHH
Q 003013 172 VISINGMAGVGKTTLAQLVYNDDR-----VQRHYEIKAWTCVSEDFDVFGVSKFILN 223 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~~~-----~~~~Fd~~~wv~vs~~~~~~~i~~~i~~ 223 (857)
+..|+|.+|.||||++..+..... ....-+..+-++...+..+..+.+.+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 789999999999987666655321 1234455666666666667777777665
No 419
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=89.91 E-value=0.24 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.3
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999877653
No 420
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=89.91 E-value=0.23 Score=46.50 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.2
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|+|+|..|+|||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 799999999999999999763
No 421
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.89 E-value=1 Score=47.93 Aligned_cols=25 Identities=32% Similarity=0.259 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.++|..|+||||.+..+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888764
No 422
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=89.88 E-value=0.29 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|.|..|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 423
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=89.87 E-value=0.24 Score=45.92 Aligned_cols=21 Identities=43% Similarity=0.621 Sum_probs=19.0
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|+|.+|+|||||++.+.+.
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999988775
No 424
>PRK06921 hypothetical protein; Provisional
Probab=89.87 E-value=0.36 Score=48.71 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=28.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
....+-++|..|+|||+||.+|.+....+. -..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 346789999999999999999999532221 234566664
No 425
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.85 E-value=0.42 Score=51.03 Aligned_cols=57 Identities=32% Similarity=0.356 Sum_probs=40.6
Q ss_pred ccCCeeecchhH---HHHHHHHHhcCCC--C-CCCCceEEEEeccCCcchHHHHHHHhcccch
Q 003013 140 VNEAKVYGREKE---KEEIIELLLNDDL--R-ADDGFSVISINGMAGVGKTTLAQLVYNDDRV 196 (857)
Q Consensus 140 ~~~~~~vG~~~~---~~~i~~~L~~~~~--~-~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~ 196 (857)
+..+++-|.|+. .++|++.|.+... + ++.=.+=|-++|.+|.|||-||++|.-.+.+
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 345668888765 5778888866420 0 1223566889999999999999999886543
No 426
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=89.84 E-value=0.4 Score=49.82 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-..|+|.||.|.||||+++.+...
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~ 156 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAAR 156 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998763
No 427
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=89.84 E-value=0.24 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|+|..|+|||||++.+.+.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 428
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=89.84 E-value=0.44 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=20.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|.++|.+|+|||||...+...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 467889999999999999998663
No 429
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.83 E-value=0.25 Score=48.24 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999874
No 430
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=89.80 E-value=0.25 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+-|||.+|+||||+|+.+-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 46799999999999999998743
No 431
>PRK06851 hypothetical protein; Provisional
Probab=89.79 E-value=3.3 Score=43.65 Aligned_cols=37 Identities=19% Similarity=0.508 Sum_probs=28.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
+++.|-|..|+|||||++.+..... ++.+++-++-|-
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~ 251 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCG 251 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCC
Confidence 7899999999999999999999643 334555444443
No 432
>PRK15453 phosphoribulokinase; Provisional
Probab=89.77 E-value=0.29 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+..+|||.|-.|.||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998875
No 433
>PRK06526 transposase; Provisional
Probab=89.76 E-value=0.22 Score=49.78 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-+-|+|.+|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999875
No 434
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=89.75 E-value=0.31 Score=45.59 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=22.6
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++..|.|+|.+|+|||||.+...+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~ 27 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR 27 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC
Confidence 36778999999999999999998764
No 435
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=89.74 E-value=0.61 Score=46.81 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=40.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccC----CceEEEEeCCCCCHHHHHHHHHHHc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHY----EIKAWTCVSEDFDVFGVSKFILNSI 225 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F----d~~~wv~vs~~~~~~~i~~~i~~~l 225 (857)
.-.++-|+|..|+|||.||-++.-...+.... ..++|++-...|..+++.+ |+++.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhcc
Confidence 45799999999999999998776543333222 3588999888999988864 66543
No 436
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.73 E-value=0.3 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..+|-|.|..|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999874
No 437
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.73 E-value=0.82 Score=52.16 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=38.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.+...+.+..++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 16 f~~viGq~~~~~~L~~~i~~~-----~l~hayLf~Gp~G~GKtt~A~~lAk~ 62 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATN-----KLAHAYLFCGPRGVGKTTCARIFAKT 62 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999543 13456889999999999999887653
No 438
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=89.71 E-value=0.24 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|+|.|=||+||||+|-.+...
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~ 23 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVA 23 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 6899999999999998877653
No 439
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.70 E-value=0.26 Score=48.27 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|..|.|||||++.+..-
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999773
No 440
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=89.69 E-value=0.29 Score=47.12 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+...-|+|+|.+|+|||||++.+.++
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 46678999999999999999999884
No 441
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.69 E-value=0.25 Score=49.21 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 442
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.69 E-value=0.49 Score=52.69 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=53.8
Q ss_pred CCeeecchhHHHHHHHHHhcC----------------------------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLND----------------------------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~----------------------------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+++|-+..-..++.||..= +.+.-..-+|.-++|.+|+||||||.-|..+
T Consensus 270 FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 270 FTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred HHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHh
Confidence 355777777777777777531 0001134678999999999999999988774
Q ss_pred cchhccCCceEEEEeCCCCCHHHHHHHHHHHccC
Q 003013 194 DRVQRHYEIKAWTCVSEDFDVFGVSKFILNSIAK 227 (857)
Q Consensus 194 ~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~ 227 (857)
+- | .|+=+..|++-....+-..|...+..
T Consensus 350 aG----Y-sVvEINASDeRt~~~v~~kI~~avq~ 378 (877)
T KOG1969|consen 350 AG----Y-SVVEINASDERTAPMVKEKIENAVQN 378 (877)
T ss_pred cC----c-eEEEecccccccHHHHHHHHHHHHhh
Confidence 21 2 14556677777777777777665543
No 443
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.68 E-value=0.69 Score=54.53 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=44.3
Q ss_pred CeeecchhHHHHHHHHHhcCCC---CCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 143 AKVYGREKEKEEIIELLLNDDL---RADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~---~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
..++|.++.++.|.+.+..... +.+....++-++|..|+|||+||+.+.... +...+.+..|+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSE 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCch
Confidence 4588999999999988864210 022345678899999999999999998732 33345555554
No 444
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=89.67 E-value=0.26 Score=47.32 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|+|.|..|.|||||++.+.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999873
No 445
>PRK01184 hypothetical protein; Provisional
Probab=89.67 E-value=0.26 Score=46.89 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=16.8
Q ss_pred eEEEEeccCCcchHHHHH
Q 003013 171 SVISINGMAGVGKTTLAQ 188 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~ 188 (857)
.+|+|.|+.|.||||+|+
T Consensus 2 ~~i~l~G~~GsGKsT~a~ 19 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK 19 (184)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 489999999999999987
No 446
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=0.39 Score=52.22 Aligned_cols=59 Identities=29% Similarity=0.213 Sum_probs=44.0
Q ss_pred CCccccCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 136 TPSLVNEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 136 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
|.+-+..+++-|.++-+.++.-+++..-.. +-.-..=|-.||.+|.|||-|||+|.|..
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa 569 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA 569 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc
Confidence 666777788888999888888777653210 01224457789999999999999999953
No 447
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.65 E-value=0.83 Score=50.12 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-+-|||..|+|||+|++++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~ 164 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNY 164 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHH
Confidence 346889999999999999999984
No 448
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=89.63 E-value=0.26 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.6
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|+|+|.+|+|||||...+.+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999888764
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.63 E-value=0.57 Score=51.14 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+-.||+++|..|+||||++..+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHH
Confidence 3479999999999999999998874
No 450
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.63 E-value=0.27 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 359999999999999999999884
No 451
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=89.63 E-value=0.25 Score=48.37 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+..-
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3469999999999999999999874
No 452
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=89.62 E-value=0.41 Score=50.42 Aligned_cols=62 Identities=24% Similarity=0.197 Sum_probs=43.7
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHH
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
++|.++....+...+..+ +-+-+.|..|+|||+||+.+... .. -...++....+....++..
T Consensus 26 ~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 26 VVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred eeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcC
Confidence 889988888888887655 45789999999999999998773 22 1234455555554444443
No 453
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=89.60 E-value=0.26 Score=46.07 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|.+|+|||||++...++
T Consensus 3 ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999987654
No 454
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=89.59 E-value=0.26 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999999873
No 455
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.59 E-value=0.43 Score=54.53 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=38.3
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.+..++.+..++..+ +-.+.+-++|..|+||||+|+.+...
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~-----rl~HAYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSN-----KISHAYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999543 23456779999999999999988653
No 456
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.53 E-value=0.8 Score=50.56 Aligned_cols=58 Identities=22% Similarity=0.142 Sum_probs=41.7
Q ss_pred CCccccCCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 136 TPSLVNEAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 136 ~~~~~~~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+.++.++|-|.|+-+.++-....-.-.. +-...+=|-.||.+|.||||+|+++.|.
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 445667788888988888776555432100 1134567889999999999999999993
No 457
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=89.51 E-value=0.27 Score=48.20 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 458
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.49 E-value=0.29 Score=43.96 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.|+||+|-.|.|||||.+.+-.
T Consensus 32 GeVLgiVGESGSGKtTLL~~is~ 54 (258)
T COG4107 32 GEVLGIVGESGSGKTTLLKCISG 54 (258)
T ss_pred CcEEEEEecCCCcHHhHHHHHhc
Confidence 36999999999999999998876
No 459
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.48 E-value=1 Score=49.96 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-+++||-+..++.+..++..+ +-.+++-++|..|+||||+|+.+.+.
T Consensus 13 fdeiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~ 59 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARA 59 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHH
Confidence 467999999999999999543 23456789999999999999977653
No 460
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.48 E-value=0.27 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|..|.|||||++.+..-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3479999999999999999999874
No 461
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.48 E-value=0.67 Score=50.73 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-+-|||..|+|||+||+++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~ 153 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH
Confidence 345999999999999999999994
No 462
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=89.48 E-value=0.27 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 463
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=89.46 E-value=0.49 Score=45.39 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++.|.|.+|.||||+++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHH
Confidence 67888999999999999998774
No 464
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.46 E-value=0.54 Score=44.73 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.5
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|..|.||||+++.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 465
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=89.46 E-value=0.26 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.3
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-|.++|.+|+|||||+..+..
T Consensus 2 kv~~~G~~~~GKTsli~~l~~ 22 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL 22 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998743
No 466
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.46 E-value=0.27 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 467
>PTZ00088 adenylate kinase 1; Provisional
Probab=89.44 E-value=0.25 Score=48.44 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=19.1
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|.|.|++|+||||+|+.+.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999998866
No 468
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.43 E-value=0.47 Score=52.56 Aligned_cols=53 Identities=23% Similarity=0.248 Sum_probs=36.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC--CCHHHHHHHHHH
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED--FDVFGVSKFILN 223 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~--~~~~~i~~~i~~ 223 (857)
-.-|-|.|..|+|||+||+++++... +++.-.+..|..|.- -..++||+.+-.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~ 485 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN 485 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH
Confidence 35688999999999999999999654 444445556665542 235555555443
No 469
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=89.40 E-value=0.28 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=19.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|.|=|||||||++-.+.--
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~ 25 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAA 25 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999988877653
No 470
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=89.38 E-value=0.38 Score=56.56 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=39.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.++|||.+..++.+..++..+ .--+.+-++|..|+||||+|+.+.+..
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~-----ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSG-----RINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhC-----CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999543 133568899999999999999986643
No 471
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.38 E-value=0.27 Score=49.13 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=22.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999875
No 472
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=89.37 E-value=0.36 Score=45.72 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=23.0
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+...|+|+|..|+|||||...+.+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 35678899999999999999999875
No 473
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=89.36 E-value=0.66 Score=48.96 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchh--ccC---CceEEEEeCCCCCHHHHHHHHHH
Q 003013 149 EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ--RHY---EIKAWTCVSEDFDVFGVSKFILN 223 (857)
Q Consensus 149 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~--~~F---d~~~wv~vs~~~~~~~i~~~i~~ 223 (857)
+.-.+.+.+.+...+ .+...+|||.|-=|.||||+.+.+.+..+.. ..+ ..-+|-.-..+--...+...|..
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFD 78 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHH
Confidence 445677778776542 2478999999999999999999998853333 111 22334444333335677777777
Q ss_pred HccCCC
Q 003013 224 SIAKDQ 229 (857)
Q Consensus 224 ~l~~~~ 229 (857)
++....
T Consensus 79 ~l~~~~ 84 (325)
T PF07693_consen 79 QLEKHF 84 (325)
T ss_pred HHHHhc
Confidence 776654
No 474
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=89.31 E-value=0.3 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+-.++||+|-.|.||||+++.|..
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc
Confidence 447999999999999999999977
No 475
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=89.31 E-value=0.28 Score=45.63 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.1
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|+|.+|+|||||.+.+.++
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887653
No 476
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.30 E-value=0.89 Score=55.86 Aligned_cols=52 Identities=17% Similarity=0.320 Sum_probs=40.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeC-CCCCHHHHHHHHHHHcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVS-EDFDVFGVSKFILNSIA 226 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs-~~~~~~~i~~~i~~~l~ 226 (857)
..+++-|.|++|.||||++...... ++.++|+++. .+-+...+...++..+.
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 6789999999999999999987642 3469999986 44566677777777774
No 477
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=89.29 E-value=0.26 Score=47.40 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|.|+.|.||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988763
No 478
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=89.28 E-value=0.29 Score=45.45 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=18.6
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-|.|+|.+|+|||||++.+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998864
No 479
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=89.25 E-value=0.29 Score=45.51 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.7
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|.|+|.+|+|||||.....+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999988764
No 480
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=89.24 E-value=0.29 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-|.|+|.+|+|||||...+.+.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 481
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=89.22 E-value=0.85 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-..|||+|.-|+|||||.+.+...
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 357999999999999999999663
No 482
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=89.19 E-value=0.31 Score=46.49 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=23.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccch
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRV 196 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~ 196 (857)
.-.++++.|.-|+|||||.+.|..-.+.
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4479999999999999999999985443
No 483
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=89.18 E-value=0.61 Score=45.32 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhcCC---CCCCCCceEEEEec-cCCcchHHHHHHHhc
Q 003013 149 EKEKEEIIELLLNDD---LRADDGFSVISING-MAGVGKTTLAQLVYN 192 (857)
Q Consensus 149 ~~~~~~i~~~L~~~~---~~~~~~~~vi~I~G-mgGvGKTTLa~~v~~ 192 (857)
.++++++-..|.... . .++..++|+|.| -||+||||+|..+..
T Consensus 12 ~~~~~~l~~~l~~~~~~~~-~~~~~~vi~v~s~kgG~GkSt~a~nLA~ 58 (207)
T TIGR03018 12 AEEFRKIKRPLLANAFSAN-RKKNNNLIMVTSSLPGEGKSFTAINLAI 58 (207)
T ss_pred HHHHHHHHHHHHHhccccc-cCCCCeEEEEECCCCCCCHHHHHHHHHH
Confidence 455666666655321 1 334678999995 889999998887766
No 484
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=89.18 E-value=0.29 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|.|..|.|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 485
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=89.18 E-value=0.83 Score=43.93 Aligned_cols=23 Identities=43% Similarity=0.564 Sum_probs=21.1
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|-|.-|+||||+|+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 486
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=89.17 E-value=0.52 Score=48.74 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=42.3
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcccchh----ccCCceEEEEeCCCCCHHHHHHHHHHHccC
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYNDDRVQ----RHYEIKAWTCVSEDFDVFGVSKFILNSIAK 227 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~----~~Fd~~~wv~vs~~~~~~~i~~~i~~~l~~ 227 (857)
+.-+++-|+|..|+|||+|+.++.-..... ..=..++|++.-..|+.+++.+ ++++++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 356899999999999999998765322221 1124688999888899888764 5666543
No 487
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.17 E-value=0.65 Score=49.26 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=38.0
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+++|.+..++.+.+.+..+ .-.+.+-++|..|+||||+|....+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~~A~ 63 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----RLHHAWLIGGPQGIGKATLAYRMAR 63 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999543 2345789999999999999987765
No 488
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=89.16 E-value=0.28 Score=45.76 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.1
Q ss_pred EEEeccCCcchHHHHHHHhc
Q 003013 173 ISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~ 192 (857)
|.|+|..|+|||||...+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 78999999999999998765
No 489
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.16 E-value=0.29 Score=48.91 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 490
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.13 E-value=0.3 Score=47.48 Aligned_cols=24 Identities=38% Similarity=0.551 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|.|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999999874
No 491
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=89.12 E-value=0.25 Score=47.48 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=19.9
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|.|-|+-|.||||+++.+.+.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEH 22 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 492
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=89.11 E-value=0.32 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+.++|+|.|=|||||||.+..+.-
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~ 26 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLA 26 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHH
Confidence 568999999999999998877654
No 493
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=89.11 E-value=0.3 Score=45.05 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.3
Q ss_pred EEEEeccCCcchHHHHHHHh
Q 003013 172 VISINGMAGVGKTTLAQLVY 191 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~ 191 (857)
-|+|+|.+|+|||||.+...
T Consensus 2 ki~vvG~~gvGKTsli~~~~ 21 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYL 21 (158)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 37899999999999998653
No 494
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=89.09 E-value=0.3 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999874
No 495
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=89.08 E-value=0.3 Score=51.21 Aligned_cols=24 Identities=42% Similarity=0.555 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.||||.|..|+||||+++.+.-
T Consensus 366 ~gEvigilGpNgiGKTTFvk~LAG 389 (591)
T COG1245 366 DGEVIGILGPNGIGKTTFVKLLAG 389 (591)
T ss_pred cceEEEEECCCCcchHHHHHHHhc
Confidence 467999999999999999999985
No 496
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.07 E-value=0.29 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+..-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999874
No 497
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=89.05 E-value=0.29 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 498
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=89.04 E-value=0.27 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.0
Q ss_pred EEEeccCCcchHHHHHHHhcc
Q 003013 173 ISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 173 i~I~GmgGvGKTTLa~~v~~~ 193 (857)
|-+.|++|.||||+|+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 679999999999999998774
No 499
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.02 E-value=0.3 Score=48.37 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 369999999999999999999874
No 500
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.02 E-value=0.5 Score=53.64 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=38.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||.++.++.+..++..+ .-.+.+-++|..|+||||+|+.+.+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~-----~~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTG-----RVAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999543 13456789999999999999988764
Done!