Query 003013
Match_columns 857
No_of_seqs 383 out of 4132
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 10:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.4E-34 2.5E-38 335.3 21.7 555 265-844 99-765 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-30 6.5E-35 306.2 25.5 517 287-821 99-715 (768)
3 3vq2_A TLR4, TOLL-like recepto 100.0 3.1E-28 1.1E-32 281.2 31.0 467 289-822 33-557 (606)
4 3t6q_A CD180 antigen; protein- 100.0 3.7E-26 1.3E-30 263.9 38.2 196 621-822 350-559 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-26 5.1E-31 267.2 32.1 474 265-803 31-561 (606)
6 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-25 5.5E-30 255.4 38.4 448 331-821 26-508 (549)
7 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-25 1.2E-29 259.2 42.1 519 266-823 25-622 (680)
8 3t6q_A CD180 antigen; protein- 99.9 2.5E-25 8.4E-30 257.0 35.4 492 332-853 34-561 (606)
9 1ziw_A TOLL-like receptor 3; i 99.9 5.5E-25 1.9E-29 257.6 38.2 177 621-803 430-625 (680)
10 4eco_A Uncharacterized protein 99.9 6.7E-26 2.3E-30 260.9 28.2 147 643-797 431-597 (636)
11 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-24 8.1E-29 256.9 42.5 477 307-853 22-561 (844)
12 4ecn_A Leucine-rich repeat pro 99.9 5.4E-26 1.8E-30 265.2 26.2 159 346-520 439-630 (876)
13 4eco_A Uncharacterized protein 99.9 3E-26 1E-30 263.8 23.6 359 343-780 194-603 (636)
14 4ecn_A Leucine-rich repeat pro 99.9 3.4E-25 1.2E-29 258.5 30.6 340 401-821 438-838 (876)
15 2z63_A TOLL-like receptor 4, v 99.9 9.1E-25 3.1E-29 250.5 31.1 464 290-821 30-529 (570)
16 2z81_A CD282 antigen, TOLL-lik 99.9 9.2E-25 3.2E-29 249.0 30.3 453 289-799 27-509 (549)
17 2z7x_B TOLL-like receptor 1, v 99.9 3.4E-25 1.2E-29 250.6 22.7 171 645-821 302-479 (520)
18 2z63_A TOLL-like receptor 4, v 99.9 2.2E-24 7.4E-29 247.4 29.6 475 310-854 29-533 (570)
19 3j0a_A TOLL-like receptor 5; m 99.9 8.3E-23 2.8E-27 243.6 38.6 459 330-849 23-514 (844)
20 1jl5_A Outer protein YOPM; leu 99.9 1.6E-23 5.4E-28 230.0 25.9 201 309-542 11-225 (454)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3E-23 1E-27 236.5 29.1 171 645-821 331-508 (562)
22 2z7x_B TOLL-like receptor 1, v 99.9 5.5E-23 1.9E-27 232.4 25.6 430 309-799 21-480 (520)
23 1jl5_A Outer protein YOPM; leu 99.9 6.2E-23 2.1E-27 225.3 25.0 389 330-820 10-426 (454)
24 1o6v_A Internalin A; bacterial 99.9 4.5E-22 1.5E-26 220.9 27.0 152 641-805 239-392 (466)
25 1o6v_A Internalin A; bacterial 99.9 1.5E-21 5.2E-26 216.7 29.3 326 353-781 65-392 (466)
26 4fmz_A Internalin; leucine ric 99.9 9.1E-22 3.1E-26 209.9 25.0 147 353-519 41-187 (347)
27 3v47_A TOLL-like receptor 5B a 99.9 2.8E-21 9.5E-26 214.6 29.7 135 645-804 275-412 (455)
28 4g8a_A TOLL-like receptor 4; l 99.9 4.2E-21 1.4E-25 223.5 32.4 195 621-821 371-578 (635)
29 3v47_A TOLL-like receptor 5B a 99.9 5.1E-22 1.7E-26 220.6 23.5 350 384-821 27-406 (455)
30 4fmz_A Internalin; leucine ric 99.9 1.2E-21 4.2E-26 208.9 21.5 300 387-821 44-344 (347)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.3E-20 1.1E-24 211.3 33.1 431 309-800 52-510 (562)
32 3bz5_A Internalin-J, INLJ; leu 99.9 3.5E-20 1.2E-24 203.6 30.0 142 353-519 39-180 (457)
33 3bz5_A Internalin-J, INLJ; leu 99.9 5.5E-20 1.9E-24 202.0 26.8 308 382-804 38-355 (457)
34 2id5_A Lingo-1, leucine rich r 99.9 6.3E-20 2.1E-24 204.8 27.3 288 386-772 31-329 (477)
35 3o6n_A APL1; leucine-rich repe 99.8 1.6E-19 5.4E-24 195.7 25.6 305 330-728 44-351 (390)
36 4g8a_A TOLL-like receptor 4; l 99.8 3.9E-19 1.3E-23 206.8 30.4 454 282-799 45-579 (635)
37 3o6n_A APL1; leucine-rich repe 99.8 6.3E-20 2.2E-24 198.8 22.0 124 387-518 45-174 (390)
38 2id5_A Lingo-1, leucine rich r 99.8 5.7E-19 1.9E-23 197.0 27.8 304 391-799 15-332 (477)
39 3oja_B Anopheles plasmodium-re 99.8 4E-19 1.4E-23 203.3 25.5 305 330-728 50-357 (597)
40 3oja_B Anopheles plasmodium-re 99.8 1.8E-19 6.2E-24 206.2 22.3 124 645-798 232-356 (597)
41 4fcg_A Uncharacterized protein 99.8 1.7E-18 5.8E-23 181.8 19.5 124 387-518 81-215 (328)
42 3g06_A SSPH2 (leucine-rich rep 99.8 3.4E-17 1.2E-21 185.0 27.2 110 389-519 42-151 (622)
43 1xku_A Decorin; proteoglycan, 99.8 5.1E-17 1.7E-21 171.5 26.5 279 357-750 32-328 (330)
44 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-17 5.7E-22 175.3 21.2 109 639-750 211-329 (332)
45 4fcg_A Uncharacterized protein 99.8 9.9E-18 3.4E-22 175.9 19.2 228 410-750 80-310 (328)
46 2ft3_A Biglycan; proteoglycan, 99.8 6.1E-17 2.1E-21 171.0 23.8 122 387-519 33-157 (332)
47 3g06_A SSPH2 (leucine-rich rep 99.7 2E-16 7E-21 178.6 27.8 257 411-799 40-296 (622)
48 3ogk_B Coronatine-insensitive 99.7 2E-19 6.7E-24 207.1 2.8 225 304-540 68-326 (592)
49 1xku_A Decorin; proteoglycan, 99.7 4.3E-16 1.5E-20 164.3 25.6 122 387-519 31-155 (330)
50 1ogq_A PGIP-2, polygalacturona 99.7 1.3E-17 4.3E-22 174.1 11.5 248 387-728 50-303 (313)
51 1ogq_A PGIP-2, polygalacturona 99.7 3.1E-17 1.1E-21 171.1 14.4 104 411-518 50-158 (313)
52 3ogk_B Coronatine-insensitive 99.7 4.2E-18 1.4E-22 196.0 -0.6 242 263-518 70-327 (592)
53 3zyj_A Leucine-rich repeat-con 99.7 5.1E-15 1.7E-19 162.8 23.6 130 385-519 62-195 (440)
54 3zyi_A Leucine-rich repeat-con 99.7 5E-15 1.7E-19 163.4 23.6 223 385-704 73-301 (452)
55 3zyj_A Leucine-rich repeat-con 99.7 5.3E-15 1.8E-19 162.6 23.6 132 641-799 156-291 (440)
56 3zyi_A Leucine-rich repeat-con 99.6 8.2E-15 2.8E-19 161.7 23.5 149 644-798 146-301 (452)
57 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4E-20 152.6 15.1 197 621-823 31-239 (239)
58 2z66_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 155.5 19.0 89 638-728 168-260 (306)
59 2p1m_B Transport inhibitor res 99.6 4.6E-18 1.6E-22 195.8 -4.1 407 348-799 58-518 (594)
60 2z80_A TOLL-like receptor 2, v 99.6 4.4E-15 1.5E-19 158.1 19.3 135 640-799 169-313 (353)
61 2p1m_B Transport inhibitor res 99.6 5.2E-17 1.8E-21 186.9 3.2 200 330-542 104-324 (594)
62 2z80_A TOLL-like receptor 2, v 99.6 1.1E-14 3.9E-19 155.0 20.8 174 332-519 53-232 (353)
63 2z66_A Variable lymphocyte rec 99.6 8.8E-15 3E-19 152.5 18.6 109 640-750 121-232 (306)
64 3o53_A Protein LRIM1, AGAP0063 99.6 8.3E-16 2.8E-20 160.8 7.7 69 636-705 205-274 (317)
65 1z7x_W Ribonuclease inhibitor; 99.6 1.3E-17 4.6E-22 185.3 -7.2 176 638-820 220-437 (461)
66 1ozn_A Reticulon 4 receptor; N 99.6 8.9E-14 3E-18 143.1 20.9 63 641-704 173-236 (285)
67 3o53_A Protein LRIM1, AGAP0063 99.6 8.6E-16 2.9E-20 160.7 5.0 252 346-686 24-279 (317)
68 3oja_A Leucine-rich immune mol 99.6 6.5E-15 2.2E-19 163.2 11.4 120 387-519 34-154 (487)
69 2xwt_C Thyrotropin receptor; s 99.5 9E-14 3.1E-18 138.9 16.8 106 642-750 102-214 (239)
70 1wwl_A Monocyte differentiatio 99.5 1.8E-15 6.1E-20 157.9 3.5 78 716-797 228-306 (312)
71 1z7x_W Ribonuclease inhibitor; 99.5 2.1E-16 7.3E-21 175.6 -4.4 110 638-750 277-407 (461)
72 1wwl_A Monocyte differentiatio 99.5 6.2E-15 2.1E-19 153.8 6.5 152 353-519 40-211 (312)
73 1ozn_A Reticulon 4 receptor; N 99.5 3.8E-13 1.3E-17 138.4 18.6 194 621-822 32-237 (285)
74 4ay9_X Follicle-stimulating ho 99.5 6.2E-13 2.1E-17 141.0 20.2 114 385-501 28-146 (350)
75 1p9a_G Platelet glycoprotein I 99.5 6.3E-13 2.1E-17 136.5 19.5 104 353-470 7-110 (290)
76 3oja_A Leucine-rich immune mol 99.5 1E-13 3.5E-18 153.6 13.6 100 691-795 167-270 (487)
77 4ay9_X Follicle-stimulating ho 99.5 1.4E-12 4.8E-17 138.2 21.4 151 641-796 100-255 (350)
78 1p9a_G Platelet glycoprotein I 99.5 9.7E-13 3.3E-17 135.0 18.7 188 622-821 11-206 (290)
79 2o6q_A Variable lymphocyte rec 99.5 2E-12 6.9E-17 131.6 20.8 187 624-821 19-216 (270)
80 2z62_A TOLL-like receptor 4, v 99.5 1.1E-12 3.7E-17 134.2 18.9 174 640-819 47-233 (276)
81 1h6u_A Internalin H; cell adhe 99.5 3.1E-13 1.1E-17 140.2 14.5 59 641-703 169-227 (308)
82 2a5y_B CED-4; apoptosis; HET: 99.4 1.9E-13 6.4E-18 153.7 11.6 161 146-310 131-338 (549)
83 1h6u_A Internalin H; cell adhe 99.4 8.6E-13 2.9E-17 137.0 14.4 186 621-821 41-228 (308)
84 2ast_B S-phase kinase-associat 99.4 2.1E-14 7.1E-19 152.1 2.2 129 387-523 47-182 (336)
85 2z62_A TOLL-like receptor 4, v 99.4 3.3E-12 1.1E-16 130.7 17.3 126 385-519 26-159 (276)
86 2o6q_A Variable lymphocyte rec 99.4 1E-11 3.6E-16 126.3 19.5 171 621-799 37-217 (270)
87 4glp_A Monocyte differentiatio 99.4 2.2E-12 7.5E-17 134.3 13.4 195 621-821 91-305 (310)
88 2ast_B S-phase kinase-associat 99.4 6.9E-14 2.4E-18 148.0 1.1 58 460-519 70-128 (336)
89 4glp_A Monocyte differentiatio 99.4 1.3E-11 4.6E-16 128.3 18.1 106 387-494 64-180 (310)
90 3rfs_A Internalin B, repeat mo 99.4 7.9E-12 2.7E-16 127.3 16.0 78 409-492 39-118 (272)
91 3m19_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 121.7 18.1 167 623-798 16-190 (251)
92 3rfs_A Internalin B, repeat mo 99.3 3.3E-11 1.1E-15 122.6 18.0 170 621-800 41-218 (272)
93 3cvr_A Invasion plasmid antige 99.3 6.6E-11 2.2E-15 131.9 17.8 175 622-822 60-242 (571)
94 3cvr_A Invasion plasmid antige 99.2 9.3E-11 3.2E-15 130.7 16.7 160 621-803 80-246 (571)
95 3m19_A Variable lymphocyte rec 99.2 1.5E-10 5.2E-15 116.2 16.5 149 621-777 35-192 (251)
96 1h6t_A Internalin B; cell adhe 99.2 3.6E-11 1.2E-15 123.5 11.8 170 621-805 46-217 (291)
97 4ezg_A Putative uncharacterize 99.2 5.1E-11 1.7E-15 114.6 11.9 104 642-750 41-145 (197)
98 3sfz_A APAF-1, apoptotic pepti 99.2 1.5E-11 5.2E-16 154.5 8.8 102 142-247 123-231 (1249)
99 1m9s_A Internalin B; cell inva 99.2 6.2E-11 2.1E-15 133.8 12.0 170 621-805 43-214 (605)
100 2ca6_A RAN GTPase-activating p 99.2 8E-13 2.7E-17 142.6 -3.3 106 643-750 185-312 (386)
101 4ezg_A Putative uncharacterize 99.2 1.4E-10 4.9E-15 111.5 12.4 149 306-469 41-190 (197)
102 1h6t_A Internalin B; cell adhe 99.2 2.1E-10 7.1E-15 117.7 14.2 142 387-541 68-209 (291)
103 1xeu_A Internalin C; cellular 99.2 3.8E-11 1.3E-15 121.1 8.1 159 632-805 29-189 (263)
104 2ca6_A RAN GTPase-activating p 99.1 3.9E-12 1.3E-16 137.1 0.2 15 641-655 240-254 (386)
105 1m9s_A Internalin B; cell inva 99.1 2.8E-10 9.7E-15 128.4 14.6 167 329-519 41-207 (605)
106 1vt4_I APAF-1 related killer D 99.1 5.1E-11 1.7E-15 135.9 7.3 77 145-226 130-207 (1221)
107 3e6j_A Variable lymphocyte rec 99.1 8.3E-10 2.8E-14 108.8 15.0 124 670-798 41-170 (229)
108 3qfl_A MLA10; coiled-coil, (CC 99.1 1.4E-11 4.8E-16 104.4 0.6 48 1-48 34-83 (115)
109 2v9t_B SLIT homolog 2 protein 99.1 1.9E-09 6.4E-14 105.4 15.4 139 632-798 21-163 (220)
110 2xot_A Amphoterin-induced prot 99.0 1.1E-09 3.9E-14 116.3 13.3 113 632-750 28-145 (361)
111 3goz_A Leucine-rich repeat-con 99.0 2.8E-11 9.5E-16 129.0 0.7 78 392-471 3-91 (362)
112 3e6j_A Variable lymphocyte rec 99.0 4E-09 1.4E-13 103.9 15.7 135 632-774 29-170 (229)
113 3goz_A Leucine-rich repeat-con 99.0 2.8E-11 9.5E-16 129.0 -1.6 75 416-494 3-91 (362)
114 2ell_A Acidic leucine-rich nuc 99.0 1.7E-09 5.9E-14 100.9 10.0 130 385-521 22-159 (168)
115 2v9t_B SLIT homolog 2 protein 99.0 7.9E-09 2.7E-13 101.0 15.0 144 648-821 14-163 (220)
116 2o6s_A Variable lymphocyte rec 99.0 1.5E-08 5.1E-13 98.2 16.8 159 632-805 17-183 (208)
117 1xeu_A Internalin C; cellular 99.0 2.7E-09 9.2E-14 107.5 11.8 147 620-780 40-188 (263)
118 2v70_A SLIT-2, SLIT homolog 2 98.9 7.1E-09 2.4E-13 101.3 13.9 138 632-798 21-164 (220)
119 2ell_A Acidic leucine-rich nuc 98.9 1.8E-09 6.2E-14 100.7 9.0 134 644-805 23-164 (168)
120 2je0_A Acidic leucine-rich nuc 98.9 1.9E-09 6.6E-14 98.2 8.4 124 387-517 17-148 (149)
121 2v70_A SLIT-2, SLIT homolog 2 98.9 1.2E-08 4.1E-13 99.7 14.1 144 648-821 14-164 (220)
122 2o6s_A Variable lymphocyte rec 98.9 1.4E-08 4.7E-13 98.5 13.3 163 621-797 28-195 (208)
123 3sb4_A Hypothetical leucine ri 98.8 5.5E-09 1.9E-13 109.4 8.6 76 670-750 227-306 (329)
124 1dce_A Protein (RAB geranylger 98.8 8.4E-11 2.9E-15 131.9 -6.0 36 431-469 346-381 (567)
125 1z6t_A APAF-1, apoptotic prote 98.8 8.4E-09 2.9E-13 117.8 10.2 100 143-247 124-231 (591)
126 2xot_A Amphoterin-induced prot 98.8 3.3E-08 1.1E-12 104.9 13.1 124 643-772 62-198 (361)
127 1a9n_A U2A', U2A'; complex (nu 98.8 1.8E-08 6.1E-13 94.6 9.3 125 387-520 19-151 (176)
128 2je0_A Acidic leucine-rich nuc 98.7 6.8E-09 2.3E-13 94.5 5.2 102 645-750 17-122 (149)
129 2wfh_A SLIT homolog 2 protein 98.7 9.5E-08 3.2E-12 90.9 12.8 96 649-750 14-111 (193)
130 1a9n_A U2A', U2A'; complex (nu 98.7 1.8E-08 6.3E-13 94.6 6.0 65 642-710 16-80 (176)
131 2wfh_A SLIT homolog 2 protein 98.7 2.2E-07 7.6E-12 88.4 13.2 120 359-494 13-137 (193)
132 2o6r_A Variable lymphocyte rec 98.6 4.6E-07 1.6E-11 85.0 13.7 103 670-798 29-135 (177)
133 1w8a_A SLIT protein; signaling 98.6 3.3E-07 1.1E-11 87.2 12.2 120 625-750 12-135 (192)
134 1w8a_A SLIT protein; signaling 98.6 3.9E-07 1.3E-11 86.7 12.3 97 648-750 11-111 (192)
135 4fdw_A Leucine rich hypothetic 98.6 7.1E-06 2.4E-10 87.6 23.3 163 641-839 222-395 (401)
136 2o6r_A Variable lymphocyte rec 98.5 8E-07 2.7E-11 83.4 13.6 102 387-493 28-134 (177)
137 3sb4_A Hypothetical leucine ri 98.5 1.4E-07 4.8E-12 98.7 9.1 156 644-808 100-317 (329)
138 4b8c_D Glucose-repressible alc 98.5 9.7E-08 3.3E-12 110.7 6.7 144 665-820 220-369 (727)
139 1ds9_A Outer arm dynein; leuci 98.5 4.8E-09 1.6E-13 100.8 -3.7 115 400-520 37-151 (198)
140 1dce_A Protein (RAB geranylger 98.5 3.4E-07 1.2E-11 102.7 10.2 121 387-516 441-567 (567)
141 4b8c_D Glucose-repressible alc 98.4 2.3E-07 8E-12 107.5 8.0 148 645-799 173-328 (727)
142 4fdw_A Leucine rich hypothetic 98.4 3.3E-05 1.1E-09 82.4 24.0 58 688-750 295-354 (401)
143 2r9u_A Variable lymphocyte rec 98.4 1.6E-06 5.4E-11 80.8 10.6 80 387-470 33-115 (174)
144 3g39_A Variable lymphocyte rec 98.3 2.4E-06 8.2E-11 79.3 10.5 80 387-470 30-112 (170)
145 1ds9_A Outer arm dynein; leuci 98.3 3.4E-09 1.2E-13 101.9 -10.1 125 622-750 24-149 (198)
146 4fs7_A Uncharacterized protein 98.2 0.00025 8.4E-09 75.9 24.2 37 326-364 66-102 (394)
147 3g39_A Variable lymphocyte rec 98.1 1.5E-05 5.1E-10 73.9 11.4 90 632-726 19-112 (170)
148 4fs7_A Uncharacterized protein 98.1 0.00034 1.2E-08 74.9 23.4 20 776-795 354-374 (394)
149 2r9u_A Variable lymphocyte rec 98.1 1.8E-05 6E-10 73.6 11.4 89 633-726 23-115 (174)
150 1w5s_A Origin recognition comp 98.0 8.6E-06 2.9E-10 88.2 7.8 105 143-247 22-133 (412)
151 3e4g_A ATP synthase subunit S, 97.9 2.8E-06 9.5E-11 77.4 2.5 40 387-426 61-100 (176)
152 2ra8_A Uncharacterized protein 97.9 5.8E-06 2E-10 86.5 3.7 131 641-797 168-317 (362)
153 4gt6_A Cell surface protein; l 97.9 0.0014 4.6E-08 70.1 22.4 120 333-468 66-190 (394)
154 3e4g_A ATP synthase subunit S, 97.9 6.6E-06 2.2E-10 75.0 3.5 80 670-750 62-148 (176)
155 2ifg_A High affinity nerve gro 97.8 4E-05 1.4E-09 80.6 9.7 99 627-728 14-115 (347)
156 2ifg_A High affinity nerve gro 97.8 5.1E-05 1.7E-09 79.8 9.8 98 649-750 12-112 (347)
157 2qby_A CDC6 homolog 1, cell di 97.7 3.9E-05 1.3E-09 82.1 6.5 101 143-247 20-123 (386)
158 2v1u_A Cell division control p 97.7 8E-05 2.7E-09 79.7 8.7 103 143-247 19-125 (387)
159 1fnn_A CDC6P, cell division co 97.6 0.00024 8.1E-09 76.0 11.4 104 143-247 17-120 (389)
160 2qby_B CDC6 homolog 3, cell di 97.6 6.7E-05 2.3E-09 80.2 6.9 83 143-227 20-109 (384)
161 4gt6_A Cell surface protein; l 97.6 0.015 5.2E-07 61.9 25.4 103 406-517 82-190 (394)
162 2ra8_A Uncharacterized protein 97.6 0.00012 4E-09 76.6 8.1 13 353-365 136-148 (362)
163 4h09_A Hypothetical leucine ri 97.6 0.011 3.8E-07 62.6 23.7 33 330-364 45-77 (379)
164 2qen_A Walker-type ATPase; unk 97.4 8.7E-05 3E-09 78.2 4.7 70 142-226 11-86 (350)
165 2fna_A Conserved hypothetical 97.3 0.00033 1.1E-08 73.9 7.0 68 142-224 12-84 (357)
166 1jbk_A CLPB protein; beta barr 97.2 0.0003 1E-08 66.6 5.4 45 143-193 22-66 (195)
167 2chg_A Replication factor C sm 97.2 0.00058 2E-08 66.4 7.4 45 143-193 17-61 (226)
168 4h09_A Hypothetical leucine ri 97.1 0.11 3.8E-06 54.8 25.2 72 388-468 47-121 (379)
169 3te6_A Regulatory protein SIR3 97.1 0.00067 2.3E-08 68.7 7.3 83 145-229 22-109 (318)
170 3un9_A NLR family member X1; l 97.1 0.0001 3.6E-09 77.7 1.2 57 433-493 182-249 (372)
171 2p65_A Hypothetical protein PF 97.0 0.00045 1.5E-08 64.9 4.7 45 143-193 22-66 (187)
172 3un9_A NLR family member X1; l 96.9 0.00012 4.1E-09 77.2 -0.2 156 355-520 71-250 (372)
173 1njg_A DNA polymerase III subu 96.8 0.00075 2.6E-08 66.7 4.8 46 143-193 23-68 (250)
174 1sxj_B Activator 1 37 kDa subu 96.6 0.0012 3.9E-08 68.5 4.2 45 143-193 21-65 (323)
175 1iqp_A RFCS; clamp loader, ext 96.4 0.0025 8.4E-08 66.1 5.1 46 142-193 24-69 (327)
176 3n70_A Transport activator; si 96.3 0.0021 7.2E-08 57.3 3.6 46 144-193 2-47 (145)
177 3rw6_A Nuclear RNA export fact 96.3 0.0033 1.1E-07 61.9 4.8 40 169-210 23-62 (267)
178 3h4m_A Proteasome-activating n 96.1 0.0037 1.3E-07 63.3 4.5 52 142-193 16-74 (285)
179 2w58_A DNAI, primosome compone 96.0 0.0077 2.6E-07 57.2 6.0 55 150-208 36-90 (202)
180 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0055 1.9E-07 61.0 4.7 53 141-193 4-62 (262)
181 3co5_A Putative two-component 95.9 0.0022 7.4E-08 57.0 1.3 47 143-193 4-50 (143)
182 3cf0_A Transitional endoplasmi 95.9 0.0064 2.2E-07 61.9 5.0 52 141-193 13-72 (301)
183 3syl_A Protein CBBX; photosynt 95.8 0.0067 2.3E-07 62.2 5.0 49 145-193 33-90 (309)
184 3ec2_A DNA replication protein 95.8 0.0057 1.9E-07 56.9 4.0 44 148-194 19-62 (180)
185 3pfi_A Holliday junction ATP-d 95.7 0.0039 1.3E-07 64.9 2.7 51 142-193 28-78 (338)
186 3b9p_A CG5977-PA, isoform A; A 95.7 0.0081 2.8E-07 61.1 5.0 53 141-193 19-77 (297)
187 1sxj_D Activator 1 41 kDa subu 95.7 0.0068 2.3E-07 63.5 4.4 46 142-193 36-81 (353)
188 3pxg_A Negative regulator of g 95.6 0.0088 3E-07 65.0 5.2 45 143-193 180-224 (468)
189 1rz3_A Hypothetical protein rb 95.6 0.012 4.1E-07 55.7 5.6 42 148-192 3-44 (201)
190 1hqc_A RUVB; extended AAA-ATPa 95.6 0.0036 1.2E-07 64.7 2.0 51 142-193 11-61 (324)
191 3bos_A Putative DNA replicatio 95.6 0.012 4.1E-07 57.6 5.7 60 143-210 28-90 (242)
192 3eie_A Vacuolar protein sortin 95.5 0.012 4E-07 60.6 5.5 53 140-193 15-74 (322)
193 2chq_A Replication factor C sm 95.5 0.0071 2.4E-07 62.3 3.8 46 142-193 16-61 (319)
194 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.012 4.1E-07 60.4 5.5 54 140-193 9-68 (322)
195 3rw6_A Nuclear RNA export fact 95.5 0.011 3.9E-07 58.1 4.8 58 387-445 170-231 (267)
196 1jr3_A DNA polymerase III subu 95.5 0.012 4.2E-07 62.1 5.6 46 143-193 16-61 (373)
197 3d8b_A Fidgetin-like protein 1 95.4 0.009 3.1E-07 62.4 4.3 53 141-193 82-140 (357)
198 3uk6_A RUVB-like 2; hexameric 95.3 0.016 5.4E-07 61.1 5.7 48 142-193 43-93 (368)
199 1in4_A RUVB, holliday junction 95.3 0.0054 1.9E-07 63.5 2.0 50 143-193 25-74 (334)
200 1io0_A Tropomodulin; LRR prote 95.3 0.0098 3.3E-07 55.4 3.4 14 353-366 33-46 (185)
201 3pvs_A Replication-associated 95.3 0.011 3.7E-07 63.6 4.2 46 142-193 25-73 (447)
202 1sxj_A Activator 1 95 kDa subu 95.2 0.013 4.3E-07 64.8 4.6 52 142-193 38-100 (516)
203 2x8a_A Nuclear valosin-contain 95.2 0.017 5.8E-07 57.6 5.1 54 139-193 6-67 (274)
204 1lv7_A FTSH; alpha/beta domain 95.1 0.014 4.7E-07 57.9 4.2 53 141-193 10-68 (257)
205 2ga8_A Hypothetical 39.9 kDa p 95.0 0.021 7.3E-07 58.1 5.4 45 146-192 2-46 (359)
206 2r62_A Cell division protease 95.0 0.0076 2.6E-07 60.2 2.1 52 142-193 10-67 (268)
207 1io0_A Tropomodulin; LRR prote 95.0 0.0085 2.9E-07 55.9 2.0 35 387-421 36-75 (185)
208 3c8u_A Fructokinase; YP_612366 94.9 0.019 6.6E-07 54.6 4.4 39 151-193 7-45 (208)
209 2bjv_A PSP operon transcriptio 94.8 0.014 4.9E-07 58.1 3.5 47 143-193 6-52 (265)
210 1sxj_E Activator 1 40 kDa subu 94.8 0.012 4.1E-07 61.6 3.0 46 142-192 13-58 (354)
211 3lw7_A Adenylate kinase relate 94.8 0.014 4.7E-07 54.0 3.0 20 171-190 2-21 (179)
212 1sxj_C Activator 1 40 kDa subu 94.6 0.018 6.1E-07 59.8 3.8 45 143-193 25-69 (340)
213 4b4t_K 26S protease regulatory 94.6 0.026 8.8E-07 59.6 4.8 53 140-193 169-229 (428)
214 3u61_B DNA polymerase accessor 94.6 0.028 9.6E-07 57.9 5.0 47 142-193 25-71 (324)
215 1ojl_A Transcriptional regulat 94.5 0.019 6.7E-07 58.2 3.6 47 143-193 2-48 (304)
216 2qp9_X Vacuolar protein sortin 94.5 0.022 7.7E-07 59.3 4.2 53 141-193 49-107 (355)
217 4fcw_A Chaperone protein CLPB; 94.5 0.029 1E-06 57.4 4.9 49 145-193 19-70 (311)
218 1ofh_A ATP-dependent HSL prote 94.5 0.017 5.8E-07 59.1 3.1 51 143-193 15-73 (310)
219 4b4t_L 26S protease subunit RP 94.5 0.031 1.1E-06 59.1 5.1 55 139-193 177-238 (437)
220 3pxi_A Negative regulator of g 94.4 0.028 9.7E-07 65.4 5.2 45 143-193 180-224 (758)
221 1zp6_A Hypothetical protein AT 94.4 0.023 7.8E-07 53.2 3.6 25 169-193 8-32 (191)
222 2zan_A Vacuolar protein sortin 94.4 0.033 1.1E-06 60.0 5.3 54 140-193 131-190 (444)
223 2p5t_B PEZT; postsegregational 94.4 0.033 1.1E-06 54.9 4.9 44 148-192 11-54 (253)
224 3fwy_A Light-independent proto 94.4 0.021 7.1E-07 58.0 3.4 25 168-192 46-70 (314)
225 1d2n_A N-ethylmaleimide-sensit 94.4 0.038 1.3E-06 55.2 5.4 47 144-193 34-87 (272)
226 1odf_A YGR205W, hypothetical 3 94.4 0.042 1.4E-06 55.1 5.6 26 168-193 29-54 (290)
227 3vfd_A Spastin; ATPase, microt 94.3 0.033 1.1E-06 59.0 5.0 54 140-193 112-171 (389)
228 2kjq_A DNAA-related protein; s 94.3 0.016 5.6E-07 51.5 2.2 25 170-194 36-60 (149)
229 1qvr_A CLPB protein; coiled co 94.3 0.023 8E-07 67.0 4.2 45 143-193 170-214 (854)
230 4b4t_H 26S protease regulatory 94.3 0.03 1E-06 59.1 4.5 53 140-193 206-266 (467)
231 4b4t_J 26S protease regulatory 94.3 0.024 8.3E-07 58.9 3.7 54 139-193 144-205 (405)
232 3vaa_A Shikimate kinase, SK; s 94.2 0.023 7.9E-07 53.6 3.2 24 169-192 24-47 (199)
233 1r6b_X CLPA protein; AAA+, N-t 94.2 0.035 1.2E-06 64.7 5.4 45 143-193 186-230 (758)
234 4b4t_M 26S protease regulatory 94.1 0.032 1.1E-06 58.9 4.3 54 139-193 177-238 (434)
235 1gvn_B Zeta; postsegregational 94.1 0.055 1.9E-06 54.3 5.9 43 149-192 13-55 (287)
236 2c9o_A RUVB-like 1; hexameric 94.1 0.047 1.6E-06 59.1 5.7 48 142-193 36-86 (456)
237 3hws_A ATP-dependent CLP prote 94.1 0.037 1.3E-06 58.0 4.8 49 145-193 17-74 (363)
238 3kb2_A SPBC2 prophage-derived 94.1 0.023 7.9E-07 52.1 2.8 22 171-192 2-23 (173)
239 3tqc_A Pantothenate kinase; bi 94.0 0.053 1.8E-06 54.9 5.5 44 147-192 71-114 (321)
240 2r44_A Uncharacterized protein 94.0 0.035 1.2E-06 57.4 4.3 42 144-193 28-69 (331)
241 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.034 1.2E-06 60.3 4.3 42 145-194 24-65 (500)
242 1l8q_A Chromosomal replication 93.9 0.054 1.8E-06 55.7 5.6 39 151-193 22-60 (324)
243 1kgd_A CASK, peripheral plasma 93.9 0.027 9.1E-07 52.2 2.9 24 170-193 5-28 (180)
244 1ixz_A ATP-dependent metallopr 93.9 0.03 1E-06 55.3 3.3 51 142-193 15-72 (254)
245 1kag_A SKI, shikimate kinase I 93.8 0.024 8.1E-07 52.1 2.3 22 171-192 5-26 (173)
246 2qt1_A Nicotinamide riboside k 93.7 0.039 1.3E-06 52.4 3.7 24 169-192 20-43 (207)
247 1qhx_A CPT, protein (chloramph 93.6 0.032 1.1E-06 51.5 2.9 23 171-193 4-26 (178)
248 1ly1_A Polynucleotide kinase; 93.6 0.035 1.2E-06 51.3 3.1 22 171-192 3-24 (181)
249 1knq_A Gluconate kinase; ALFA/ 93.6 0.045 1.6E-06 50.3 3.8 24 169-192 7-30 (175)
250 4gp7_A Metallophosphoesterase; 93.6 0.038 1.3E-06 50.6 3.3 24 169-192 8-31 (171)
251 2bdt_A BH3686; alpha-beta prot 93.6 0.036 1.2E-06 51.8 3.2 22 171-192 3-24 (189)
252 3uie_A Adenylyl-sulfate kinase 93.6 0.042 1.4E-06 51.8 3.6 25 169-193 24-48 (200)
253 2hf9_A Probable hydrogenase ni 93.5 0.065 2.2E-06 51.7 4.9 39 149-193 23-61 (226)
254 3trf_A Shikimate kinase, SK; a 93.5 0.036 1.2E-06 51.5 2.9 23 170-192 5-27 (185)
255 1uj2_A Uridine-cytidine kinase 93.4 0.04 1.4E-06 54.2 3.4 24 169-192 21-44 (252)
256 1xjc_A MOBB protein homolog; s 93.4 0.041 1.4E-06 49.7 3.1 25 169-193 3-27 (169)
257 2if2_A Dephospho-COA kinase; a 93.4 0.035 1.2E-06 52.6 2.9 22 171-192 2-23 (204)
258 1uf9_A TT1252 protein; P-loop, 93.4 0.044 1.5E-06 51.8 3.5 24 169-192 7-30 (203)
259 1zuh_A Shikimate kinase; alpha 93.4 0.037 1.3E-06 50.5 2.9 24 169-192 6-29 (168)
260 4eun_A Thermoresistant glucoki 93.4 0.039 1.3E-06 52.1 3.1 24 169-192 28-51 (200)
261 2wsm_A Hydrogenase expression/ 93.4 0.047 1.6E-06 52.5 3.7 43 145-193 11-53 (221)
262 4b4t_I 26S protease regulatory 93.4 0.062 2.1E-06 56.1 4.7 54 139-193 178-239 (437)
263 3asz_A Uridine kinase; cytidin 93.4 0.043 1.5E-06 52.3 3.4 24 169-192 5-28 (211)
264 2ce7_A Cell division protein F 93.3 0.071 2.4E-06 57.3 5.3 52 141-193 14-72 (476)
265 1iy2_A ATP-dependent metallopr 93.3 0.057 1.9E-06 54.1 4.4 52 141-193 38-96 (278)
266 1ye8_A Protein THEP1, hypothet 93.3 0.042 1.4E-06 50.5 3.1 22 172-193 2-23 (178)
267 1ypw_A Transitional endoplasmi 93.2 0.068 2.3E-06 62.2 5.4 53 140-193 201-261 (806)
268 3tr0_A Guanylate kinase, GMP k 93.2 0.041 1.4E-06 52.2 2.9 22 171-192 8-29 (205)
269 2yvu_A Probable adenylyl-sulfa 93.2 0.057 2E-06 50.2 3.9 25 169-193 12-36 (186)
270 3iij_A Coilin-interacting nucl 93.2 0.037 1.3E-06 51.2 2.5 24 169-192 10-33 (180)
271 3t61_A Gluconokinase; PSI-biol 93.2 0.033 1.1E-06 52.7 2.2 24 170-193 18-41 (202)
272 1g8p_A Magnesium-chelatase 38 93.2 0.04 1.4E-06 57.5 3.0 46 142-193 23-68 (350)
273 2jaq_A Deoxyguanosine kinase; 93.1 0.043 1.5E-06 52.0 2.9 22 172-193 2-23 (205)
274 3hu3_A Transitional endoplasmi 93.1 0.049 1.7E-06 59.1 3.7 52 142-193 203-261 (489)
275 2j41_A Guanylate kinase; GMP, 93.1 0.049 1.7E-06 51.7 3.3 24 170-193 6-29 (207)
276 3aez_A Pantothenate kinase; tr 93.1 0.053 1.8E-06 55.0 3.7 24 169-192 89-112 (312)
277 1jjv_A Dephospho-COA kinase; P 93.0 0.051 1.7E-06 51.6 3.3 22 171-192 3-24 (206)
278 1y63_A LMAJ004144AAA protein; 93.0 0.051 1.7E-06 50.5 3.2 24 169-192 9-32 (184)
279 1ukz_A Uridylate kinase; trans 93.0 0.059 2E-06 51.0 3.7 24 169-192 14-37 (203)
280 3a00_A Guanylate kinase, GMP k 93.0 0.038 1.3E-06 51.5 2.3 23 171-193 2-24 (186)
281 2grj_A Dephospho-COA kinase; T 93.0 0.053 1.8E-06 50.5 3.2 24 169-192 11-34 (192)
282 1nks_A Adenylate kinase; therm 93.0 0.05 1.7E-06 51.0 3.1 23 171-193 2-24 (194)
283 2z4s_A Chromosomal replication 92.9 0.053 1.8E-06 58.2 3.6 24 170-193 130-153 (440)
284 3p32_A Probable GTPase RV1496/ 92.9 0.095 3.3E-06 54.5 5.4 39 151-193 64-102 (355)
285 2cvh_A DNA repair and recombin 92.9 0.099 3.4E-06 50.1 5.2 46 169-219 19-64 (220)
286 3cf2_A TER ATPase, transitiona 92.9 0.12 4.2E-06 59.0 6.6 56 138-193 199-261 (806)
287 1rj9_A FTSY, signal recognitio 92.8 0.061 2.1E-06 54.2 3.7 25 169-193 101-125 (304)
288 1kht_A Adenylate kinase; phosp 92.8 0.05 1.7E-06 50.8 2.9 23 171-193 4-26 (192)
289 3tau_A Guanylate kinase, GMP k 92.8 0.057 2E-06 51.3 3.3 25 169-193 7-31 (208)
290 2bbw_A Adenylate kinase 4, AK4 92.8 0.055 1.9E-06 53.0 3.3 23 170-192 27-49 (246)
291 1cke_A CK, MSSA, protein (cyti 92.7 0.052 1.8E-06 52.4 3.0 22 171-192 6-27 (227)
292 2qor_A Guanylate kinase; phosp 92.7 0.048 1.6E-06 51.7 2.6 25 169-193 11-35 (204)
293 1um8_A ATP-dependent CLP prote 92.7 0.081 2.8E-06 55.7 4.6 50 144-193 22-95 (376)
294 1htw_A HI0065; nucleotide-bind 92.6 0.066 2.3E-06 48.0 3.3 25 169-193 32-56 (158)
295 2rhm_A Putative kinase; P-loop 92.6 0.068 2.3E-06 50.0 3.5 24 169-192 4-27 (193)
296 1lvg_A Guanylate kinase, GMP k 92.6 0.047 1.6E-06 51.4 2.3 22 171-192 5-26 (198)
297 2qgz_A Helicase loader, putati 92.6 0.11 3.8E-06 52.6 5.3 57 148-208 133-189 (308)
298 2ze6_A Isopentenyl transferase 92.6 0.06 2E-06 52.9 3.1 22 171-192 2-23 (253)
299 1via_A Shikimate kinase; struc 92.5 0.049 1.7E-06 50.1 2.3 22 171-192 5-26 (175)
300 2px0_A Flagellar biosynthesis 92.5 0.065 2.2E-06 53.9 3.4 25 169-193 104-128 (296)
301 3t15_A Ribulose bisphosphate c 92.5 0.065 2.2E-06 54.0 3.4 25 169-193 35-59 (293)
302 1tev_A UMP-CMP kinase; ploop, 92.5 0.063 2.1E-06 50.3 3.1 22 171-192 4-25 (196)
303 2iyv_A Shikimate kinase, SK; t 92.5 0.047 1.6E-06 50.7 2.1 21 172-192 4-24 (184)
304 3cm0_A Adenylate kinase; ATP-b 92.5 0.066 2.3E-06 49.7 3.2 22 171-192 5-26 (186)
305 2c95_A Adenylate kinase 1; tra 92.4 0.066 2.2E-06 50.2 3.2 24 169-192 8-31 (196)
306 2jeo_A Uridine-cytidine kinase 92.4 0.076 2.6E-06 52.0 3.6 24 169-192 24-47 (245)
307 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.07 2.4E-06 52.7 3.4 25 169-193 3-27 (260)
308 2pt5_A Shikimate kinase, SK; a 92.3 0.065 2.2E-06 48.8 2.9 21 172-192 2-22 (168)
309 2f6r_A COA synthase, bifunctio 92.3 0.078 2.7E-06 53.0 3.6 23 169-191 74-96 (281)
310 3e70_C DPA, signal recognition 92.3 0.12 4.1E-06 52.6 5.0 26 168-193 127-152 (328)
311 3m6a_A ATP-dependent protease 92.2 0.066 2.3E-06 59.2 3.3 51 143-193 81-131 (543)
312 1n0w_A DNA repair protein RAD5 92.2 0.18 6.2E-06 49.1 6.2 56 169-225 23-82 (243)
313 1e6c_A Shikimate kinase; phosp 92.2 0.057 1.9E-06 49.5 2.3 22 171-192 3-24 (173)
314 2pez_A Bifunctional 3'-phospho 92.2 0.081 2.8E-06 48.8 3.4 24 169-192 4-27 (179)
315 2bwj_A Adenylate kinase 5; pho 92.2 0.067 2.3E-06 50.3 2.8 22 171-192 13-34 (199)
316 2i3b_A HCR-ntpase, human cance 92.1 0.06 2.1E-06 50.0 2.4 24 171-194 2-25 (189)
317 3kl4_A SRP54, signal recogniti 92.1 1 3.5E-05 47.5 12.1 25 169-193 96-120 (433)
318 1znw_A Guanylate kinase, GMP k 92.1 0.075 2.6E-06 50.4 3.2 25 169-193 19-43 (207)
319 4e22_A Cytidylate kinase; P-lo 92.1 0.077 2.6E-06 52.1 3.3 24 169-192 26-49 (252)
320 3rfe_A Platelet glycoprotein I 92.1 0.22 7.6E-06 42.8 5.8 46 753-799 18-67 (130)
321 2cdn_A Adenylate kinase; phosp 92.0 0.09 3.1E-06 49.6 3.6 24 169-192 19-42 (201)
322 1sq5_A Pantothenate kinase; P- 92.0 0.17 5.9E-06 51.3 5.9 24 169-192 79-102 (308)
323 1g41_A Heat shock protein HSLU 92.0 0.12 4.2E-06 54.6 4.9 51 143-193 15-73 (444)
324 2dhr_A FTSH; AAA+ protein, hex 92.0 0.17 5.7E-06 54.8 6.0 53 141-193 29-87 (499)
325 2f1r_A Molybdopterin-guanine d 91.9 0.051 1.7E-06 49.5 1.6 23 171-193 3-25 (171)
326 2ged_A SR-beta, signal recogni 91.9 0.12 4.3E-06 48.1 4.5 26 168-193 46-71 (193)
327 2pbr_A DTMP kinase, thymidylat 91.9 0.076 2.6E-06 49.7 2.9 22 172-193 2-23 (195)
328 1ex7_A Guanylate kinase; subst 91.9 0.071 2.4E-06 49.1 2.6 22 171-192 2-23 (186)
329 3ney_A 55 kDa erythrocyte memb 91.9 0.078 2.7E-06 49.3 2.9 24 169-192 18-41 (197)
330 1qf9_A UMP/CMP kinase, protein 91.9 0.1 3.5E-06 48.7 3.8 23 170-192 6-28 (194)
331 1z6g_A Guanylate kinase; struc 91.9 0.069 2.4E-06 51.1 2.6 23 170-192 23-45 (218)
332 3b9q_A Chloroplast SRP recepto 91.8 0.093 3.2E-06 52.9 3.6 25 169-193 99-123 (302)
333 2onk_A Molybdate/tungstate ABC 91.8 0.087 3E-06 51.1 3.2 23 169-192 24-46 (240)
334 2vli_A Antibiotic resistance p 91.7 0.066 2.3E-06 49.6 2.2 23 170-192 5-27 (183)
335 2plr_A DTMP kinase, probable t 91.7 0.087 3E-06 50.1 3.1 23 171-193 5-27 (213)
336 3end_A Light-independent proto 91.7 0.092 3.1E-06 53.5 3.4 27 167-193 38-64 (307)
337 1np6_A Molybdopterin-guanine d 91.6 0.094 3.2E-06 47.8 3.0 25 169-193 5-29 (174)
338 3nwj_A ATSK2; P loop, shikimat 91.6 0.073 2.5E-06 51.9 2.4 22 171-192 49-70 (250)
339 1s96_A Guanylate kinase, GMP k 91.5 0.1 3.5E-06 49.8 3.3 25 169-193 15-39 (219)
340 1vma_A Cell division protein F 91.4 0.12 4E-06 52.2 3.8 26 168-193 102-127 (306)
341 1vht_A Dephospho-COA kinase; s 91.3 0.12 4E-06 49.5 3.6 23 170-192 4-26 (218)
342 1zu4_A FTSY; GTPase, signal re 91.3 0.12 4.2E-06 52.4 3.9 25 169-193 104-128 (320)
343 1gtv_A TMK, thymidylate kinase 91.3 0.061 2.1E-06 51.4 1.5 22 172-193 2-23 (214)
344 2wji_A Ferrous iron transport 91.2 0.12 4E-06 46.9 3.3 23 171-193 4-26 (165)
345 1yrb_A ATP(GTP)binding protein 91.2 0.12 4.2E-06 51.1 3.7 25 169-193 13-37 (262)
346 1oix_A RAS-related protein RAB 91.2 0.11 3.7E-06 48.5 3.2 25 169-193 28-52 (191)
347 3b85_A Phosphate starvation-in 91.2 0.093 3.2E-06 49.6 2.6 23 171-193 23-45 (208)
348 2pcj_A ABC transporter, lipopr 91.2 0.1 3.5E-06 50.1 2.9 23 170-192 30-52 (224)
349 1zd8_A GTP:AMP phosphotransfer 91.1 0.1 3.5E-06 50.3 3.0 24 169-192 6-29 (227)
350 3k1j_A LON protease, ATP-depen 91.1 0.13 4.4E-06 57.9 4.2 43 143-193 41-83 (604)
351 1m7g_A Adenylylsulfate kinase; 91.1 0.12 4.1E-06 49.1 3.4 25 169-193 24-48 (211)
352 2z0h_A DTMP kinase, thymidylat 91.1 0.1 3.6E-06 48.9 2.9 22 172-193 2-23 (197)
353 1tue_A Replication protein E1; 91.1 0.17 5.8E-06 46.8 4.1 37 152-193 45-81 (212)
354 2vp4_A Deoxynucleoside kinase; 91.1 0.12 4.3E-06 49.8 3.5 25 168-192 18-42 (230)
355 2afh_E Nitrogenase iron protei 91.0 0.12 4E-06 52.1 3.4 24 170-193 2-25 (289)
356 1nn5_A Similar to deoxythymidy 91.0 0.12 4E-06 49.4 3.2 24 170-193 9-32 (215)
357 2ehv_A Hypothetical protein PH 91.0 0.11 3.7E-06 51.0 3.0 24 169-192 29-52 (251)
358 2wwf_A Thymidilate kinase, put 91.0 0.11 3.6E-06 49.6 2.8 25 169-193 9-33 (212)
359 2dyk_A GTP-binding protein; GT 91.0 0.13 4.4E-06 46.2 3.3 23 171-193 2-24 (161)
360 3d3q_A TRNA delta(2)-isopenten 90.9 0.11 3.9E-06 52.6 3.1 23 171-193 8-30 (340)
361 3lnc_A Guanylate kinase, GMP k 90.9 0.083 2.8E-06 51.2 2.0 23 170-192 27-50 (231)
362 4a74_A DNA repair and recombin 90.9 0.12 4.1E-06 49.9 3.2 24 169-192 24-47 (231)
363 1aky_A Adenylate kinase; ATP:A 90.9 0.12 4E-06 49.6 3.1 23 170-192 4-26 (220)
364 3fb4_A Adenylate kinase; psych 90.8 0.12 4E-06 49.4 3.0 21 172-192 2-22 (216)
365 2og2_A Putative signal recogni 90.8 0.14 4.6E-06 52.9 3.6 25 169-193 156-180 (359)
366 3tlx_A Adenylate kinase 2; str 90.7 0.19 6.6E-06 48.9 4.5 24 169-192 28-51 (243)
367 3dl0_A Adenylate kinase; phosp 90.7 0.12 4.1E-06 49.3 3.0 21 172-192 2-22 (216)
368 2v54_A DTMP kinase, thymidylat 90.7 0.12 4E-06 48.8 2.9 23 171-193 5-27 (204)
369 2yhs_A FTSY, cell division pro 90.6 0.14 4.9E-06 54.6 3.6 25 169-193 292-316 (503)
370 2cbz_A Multidrug resistance-as 90.6 0.14 4.7E-06 49.6 3.3 24 170-193 31-54 (237)
371 1ji0_A ABC transporter; ATP bi 90.6 0.12 4.2E-06 50.1 2.9 24 170-193 32-55 (240)
372 3ake_A Cytidylate kinase; CMP 90.6 0.13 4.3E-06 48.8 3.0 21 172-192 4-24 (208)
373 1sgw_A Putative ABC transporte 90.6 0.11 3.6E-06 49.4 2.4 23 171-193 36-58 (214)
374 2xxa_A Signal recognition part 90.6 0.15 5E-06 54.3 3.7 25 169-193 99-123 (433)
375 3tif_A Uncharacterized ABC tra 90.6 0.14 4.8E-06 49.5 3.3 24 169-192 30-53 (235)
376 2pze_A Cystic fibrosis transme 90.5 0.13 4.4E-06 49.6 2.9 24 170-193 34-57 (229)
377 2zej_A Dardarin, leucine-rich 90.5 0.13 4.3E-06 47.7 2.8 22 172-193 4-25 (184)
378 1ls1_A Signal recognition part 90.5 0.15 5E-06 51.3 3.4 25 169-193 97-121 (295)
379 1cp2_A CP2, nitrogenase iron p 90.5 0.14 4.7E-06 51.0 3.2 23 171-193 2-24 (269)
380 2d2e_A SUFC protein; ABC-ATPas 90.4 0.13 4.5E-06 50.2 3.0 23 170-192 29-51 (250)
381 2r8r_A Sensor protein; KDPD, P 90.4 0.24 8.2E-06 46.8 4.6 23 171-193 7-29 (228)
382 1g6h_A High-affinity branched- 90.4 0.13 4.5E-06 50.5 2.9 23 170-192 33-55 (257)
383 2i1q_A DNA repair and recombin 90.3 0.38 1.3E-05 49.2 6.5 57 169-226 97-167 (322)
384 2f9l_A RAB11B, member RAS onco 90.3 0.14 4.7E-06 48.2 2.9 24 170-193 5-28 (199)
385 1b0u_A Histidine permease; ABC 90.3 0.15 5.2E-06 50.2 3.3 24 169-192 31-54 (262)
386 1svi_A GTP-binding protein YSX 90.2 0.18 6.3E-06 47.0 3.8 25 169-193 22-46 (195)
387 3gfo_A Cobalt import ATP-bindi 90.2 0.13 4.6E-06 50.8 2.9 23 170-192 34-56 (275)
388 2olj_A Amino acid ABC transpor 90.2 0.16 5.3E-06 50.0 3.3 24 169-192 49-72 (263)
389 2ff7_A Alpha-hemolysin translo 90.2 0.14 4.8E-06 49.9 2.9 24 170-193 35-58 (247)
390 1z2a_A RAS-related protein RAB 90.2 0.16 5.6E-06 45.8 3.3 25 169-193 4-28 (168)
391 2qi9_C Vitamin B12 import ATP- 90.1 0.14 4.9E-06 49.8 2.9 24 170-193 26-49 (249)
392 3pxi_A Negative regulator of g 90.1 0.24 8.2E-06 57.6 5.3 51 143-193 491-544 (758)
393 1mv5_A LMRA, multidrug resista 90.1 0.18 6E-06 49.1 3.6 24 169-192 27-50 (243)
394 3r20_A Cytidylate kinase; stru 90.1 0.15 5.1E-06 48.9 3.0 23 170-192 9-31 (233)
395 1svm_A Large T antigen; AAA+ f 90.1 0.25 8.6E-06 51.3 4.9 24 169-192 168-191 (377)
396 2wjg_A FEOB, ferrous iron tran 90.1 0.17 5.7E-06 46.9 3.3 25 169-193 6-30 (188)
397 2ce2_X GTPase HRAS; signaling 90.0 0.14 4.9E-06 46.0 2.8 22 172-193 5-26 (166)
398 1vpl_A ABC transporter, ATP-bi 90.0 0.17 5.7E-06 49.6 3.3 25 169-193 40-64 (256)
399 2z43_A DNA repair and recombin 90.0 0.44 1.5E-05 48.7 6.6 57 169-226 106-166 (324)
400 3be4_A Adenylate kinase; malar 90.0 0.13 4.5E-06 49.1 2.5 23 171-193 6-28 (217)
401 4g1u_C Hemin import ATP-bindin 89.9 0.15 5.1E-06 50.3 2.9 23 170-192 37-59 (266)
402 3con_A GTPase NRAS; structural 89.9 0.15 5E-06 47.5 2.8 23 171-193 22-44 (190)
403 1zak_A Adenylate kinase; ATP:A 89.8 0.14 4.9E-06 49.1 2.7 24 170-193 5-28 (222)
404 2zu0_C Probable ATP-dependent 89.8 0.18 6.1E-06 49.8 3.4 25 169-193 45-69 (267)
405 2nq2_C Hypothetical ABC transp 89.8 0.15 5.3E-06 49.8 2.9 24 170-193 31-54 (253)
406 3umf_A Adenylate kinase; rossm 89.8 0.19 6.6E-06 47.6 3.4 26 168-193 27-52 (217)
407 2ghi_A Transport protein; mult 89.7 0.18 6.1E-06 49.6 3.3 24 170-193 46-69 (260)
408 2qtf_A Protein HFLX, GTP-bindi 89.7 0.4 1.4E-05 49.7 6.1 25 169-193 178-202 (364)
409 2p67_A LAO/AO transport system 89.7 0.32 1.1E-05 50.1 5.4 24 169-192 55-78 (341)
410 2ixe_A Antigen peptide transpo 89.6 0.18 6.3E-06 49.9 3.3 24 169-192 44-67 (271)
411 1q3t_A Cytidylate kinase; nucl 89.6 0.19 6.3E-06 48.8 3.3 24 169-192 15-38 (236)
412 2yz2_A Putative ABC transporte 89.6 0.19 6.3E-06 49.7 3.3 23 170-192 33-55 (266)
413 2ihy_A ABC transporter, ATP-bi 89.6 0.17 5.6E-06 50.4 2.9 24 170-193 47-70 (279)
414 1e4v_A Adenylate kinase; trans 89.5 0.17 5.7E-06 48.2 2.9 21 172-192 2-22 (214)
415 2xb4_A Adenylate kinase; ATP-b 89.5 0.17 5.9E-06 48.5 2.9 21 172-192 2-22 (223)
416 1a7j_A Phosphoribulokinase; tr 89.5 0.13 4.4E-06 51.6 2.1 24 169-192 4-27 (290)
417 2lkc_A Translation initiation 89.4 0.23 7.7E-06 45.5 3.6 26 168-193 6-31 (178)
418 3lda_A DNA repair protein RAD5 89.4 0.45 1.5E-05 49.9 6.2 57 169-226 177-237 (400)
419 2v3c_C SRP54, signal recogniti 89.4 0.14 4.8E-06 54.4 2.3 25 169-193 98-122 (432)
420 3dm5_A SRP54, signal recogniti 89.3 0.37 1.3E-05 50.9 5.5 25 169-193 99-123 (443)
421 1j8m_F SRP54, signal recogniti 89.3 0.18 6E-06 50.7 2.9 24 170-193 98-121 (297)
422 3q85_A GTP-binding protein REM 89.3 0.22 7.5E-06 45.1 3.4 23 170-192 2-24 (169)
423 2vhj_A Ntpase P4, P4; non- hyd 89.3 0.2 6.7E-06 50.2 3.2 34 170-208 123-156 (331)
424 1pzn_A RAD51, DNA repair and r 89.2 0.39 1.3E-05 49.5 5.6 47 169-215 130-180 (349)
425 2w0m_A SSO2452; RECA, SSPF, un 89.2 0.19 6.4E-06 48.6 3.0 24 170-193 23-46 (235)
426 1fzq_A ADP-ribosylation factor 89.2 0.24 8.2E-06 45.6 3.6 25 169-193 15-39 (181)
427 2j37_W Signal recognition part 89.2 0.37 1.3E-05 52.1 5.5 43 151-193 79-124 (504)
428 3sop_A Neuronal-specific septi 89.1 0.18 6.2E-06 49.9 2.8 22 172-193 4-25 (270)
429 1nrj_B SR-beta, signal recogni 89.1 0.22 7.4E-06 47.5 3.4 26 168-193 10-35 (218)
430 1mky_A Probable GTP-binding pr 89.1 0.4 1.4E-05 51.5 5.7 48 146-193 151-203 (439)
431 1ak2_A Adenylate kinase isoenz 89.0 0.21 7.3E-06 48.3 3.3 25 169-193 15-39 (233)
432 1c1y_A RAS-related protein RAP 89.0 0.19 6.6E-06 45.3 2.8 23 171-193 4-26 (167)
433 1v5w_A DMC1, meiotic recombina 89.0 0.45 1.5E-05 49.0 5.8 56 169-225 121-180 (343)
434 1u8z_A RAS-related protein RAL 89.0 0.19 6.6E-06 45.3 2.8 24 170-193 4-27 (168)
435 3crm_A TRNA delta(2)-isopenten 89.0 0.21 7.1E-06 50.4 3.1 23 171-193 6-28 (323)
436 1nlf_A Regulatory protein REPA 89.0 0.19 6.5E-06 50.2 2.9 23 170-192 30-52 (279)
437 2v9p_A Replication protein E1; 88.9 0.21 7.3E-06 50.0 3.2 24 169-192 125-148 (305)
438 3q72_A GTP-binding protein RAD 88.9 0.19 6.7E-06 45.3 2.7 23 171-193 3-25 (166)
439 2gj8_A MNME, tRNA modification 88.9 0.24 8.3E-06 45.1 3.4 23 171-193 5-27 (172)
440 3t1o_A Gliding protein MGLA; G 88.9 0.19 6.4E-06 47.0 2.7 25 169-193 13-37 (198)
441 2eyu_A Twitching motility prot 88.9 0.22 7.6E-06 48.9 3.3 24 169-192 24-47 (261)
442 2www_A Methylmalonic aciduria 88.8 0.26 9E-06 50.9 3.9 24 169-192 73-96 (349)
443 2erx_A GTP-binding protein DI- 88.7 0.21 7.2E-06 45.3 2.9 23 171-193 4-26 (172)
444 1tq4_A IIGP1, interferon-induc 88.7 0.23 7.8E-06 52.2 3.4 24 169-192 68-91 (413)
445 2nzj_A GTP-binding protein REM 88.7 0.27 9.3E-06 44.7 3.6 25 169-193 3-27 (175)
446 3pqc_A Probable GTP-binding pr 88.7 0.28 9.6E-06 45.6 3.8 25 169-193 22-46 (195)
447 1z08_A RAS-related protein RAB 88.7 0.21 7.1E-06 45.3 2.8 25 169-193 5-29 (170)
448 2pjz_A Hypothetical protein ST 88.6 0.21 7.1E-06 49.1 2.9 22 171-192 31-52 (263)
449 1m7b_A RND3/RHOE small GTP-bin 88.6 0.24 8.4E-06 45.7 3.3 25 169-193 6-30 (184)
450 2zr9_A Protein RECA, recombina 88.6 0.46 1.6E-05 48.9 5.6 44 169-214 60-103 (349)
451 4eaq_A DTMP kinase, thymidylat 88.6 0.47 1.6E-05 45.5 5.3 26 169-194 25-50 (229)
452 1f6b_A SAR1; gtpases, N-termin 88.5 0.27 9.2E-06 46.1 3.5 24 170-193 25-48 (198)
453 2fn4_A P23, RAS-related protei 88.5 0.28 9.7E-06 44.9 3.6 25 169-193 8-32 (181)
454 3hr8_A Protein RECA; alpha and 88.4 0.54 1.9E-05 48.3 5.9 45 169-215 60-104 (356)
455 3llu_A RAS-related GTP-binding 88.4 0.24 8.3E-06 46.3 3.1 25 169-193 19-43 (196)
456 2qu8_A Putative nucleolar GTP- 88.4 0.3 1E-05 47.0 3.8 26 168-193 27-52 (228)
457 3ihw_A Centg3; RAS, centaurin, 88.4 0.22 7.6E-06 46.0 2.8 25 169-193 19-43 (184)
458 1z0j_A RAB-22, RAS-related pro 88.4 0.22 7.7E-06 45.0 2.8 24 170-193 6-29 (170)
459 4dzz_A Plasmid partitioning pr 88.4 0.23 8E-06 46.8 3.0 23 171-193 2-25 (206)
460 1u94_A RECA protein, recombina 88.4 0.5 1.7E-05 48.7 5.6 45 169-215 62-106 (356)
461 1cr0_A DNA primase/helicase; R 88.3 0.23 7.7E-06 50.2 3.0 52 169-224 34-86 (296)
462 3cbq_A GTP-binding protein REM 88.3 0.22 7.6E-06 46.5 2.7 24 169-192 22-45 (195)
463 3c5c_A RAS-like protein 12; GD 88.3 0.23 7.8E-06 46.1 2.8 25 169-193 20-44 (187)
464 2ocp_A DGK, deoxyguanosine kin 88.2 0.26 9E-06 47.9 3.3 23 171-193 3-25 (241)
465 2bbs_A Cystic fibrosis transme 88.2 0.26 8.8E-06 49.2 3.3 25 169-193 63-87 (290)
466 3fkq_A NTRC-like two-domain pr 88.2 0.28 9.7E-06 51.3 3.8 28 166-193 139-167 (373)
467 1ek0_A Protein (GTP-binding pr 88.2 0.23 8E-06 44.9 2.8 22 172-193 5-26 (170)
468 3tw8_B RAS-related protein RAB 88.2 0.25 8.6E-06 45.2 3.0 25 169-193 8-32 (181)
469 2yv5_A YJEQ protein; hydrolase 88.1 0.32 1.1E-05 49.1 3.9 31 152-191 156-186 (302)
470 3kkq_A RAS-related protein M-R 88.1 0.32 1.1E-05 44.7 3.7 25 169-193 17-41 (183)
471 3ld9_A DTMP kinase, thymidylat 88.1 0.7 2.4E-05 43.9 6.0 36 169-204 20-55 (223)
472 3a8t_A Adenylate isopentenyltr 88.0 0.31 1.1E-05 49.3 3.7 25 169-193 39-63 (339)
473 3ea0_A ATPase, para family; al 88.0 0.28 9.6E-06 47.8 3.4 25 169-193 3-28 (245)
474 2qnr_A Septin-2, protein NEDD5 88.0 0.22 7.6E-06 50.2 2.7 21 172-192 20-40 (301)
475 1ky3_A GTP-binding protein YPT 88.0 0.29 9.8E-06 44.9 3.3 25 169-193 7-31 (182)
476 3nh6_A ATP-binding cassette SU 88.0 0.23 7.8E-06 49.9 2.7 24 169-192 79-102 (306)
477 2cxx_A Probable GTP-binding pr 87.9 0.26 8.8E-06 45.7 3.0 22 172-193 3-24 (190)
478 1kao_A RAP2A; GTP-binding prot 87.9 0.25 8.5E-06 44.5 2.8 23 171-193 4-26 (167)
479 1m2o_B GTP-binding protein SAR 87.8 0.25 8.5E-06 45.9 2.8 24 170-193 23-46 (190)
480 1r6b_X CLPA protein; AAA+, N-t 87.8 0.33 1.1E-05 56.4 4.4 51 143-193 458-511 (758)
481 4bas_A ADP-ribosylation factor 87.8 0.29 1E-05 45.7 3.3 26 168-193 15-40 (199)
482 2hxs_A RAB-26, RAS-related pro 87.8 0.39 1.3E-05 43.9 4.0 25 169-193 5-29 (178)
483 1nij_A Hypothetical protein YJ 87.8 0.26 8.8E-06 50.2 3.0 25 169-193 3-27 (318)
484 1r8s_A ADP-ribosylation factor 87.8 0.25 8.6E-06 44.4 2.7 22 172-193 2-23 (164)
485 1z0f_A RAB14, member RAS oncog 87.7 0.29 1E-05 44.7 3.2 25 169-193 14-38 (179)
486 1pui_A ENGB, probable GTP-bind 87.7 0.19 6.5E-06 47.6 1.9 25 169-193 25-49 (210)
487 1ltq_A Polynucleotide kinase; 87.6 0.28 9.5E-06 49.7 3.2 22 171-192 3-24 (301)
488 2qm8_A GTPase/ATPase; G protei 87.6 0.32 1.1E-05 49.9 3.6 24 169-192 54-77 (337)
489 1r2q_A RAS-related protein RAB 87.5 0.27 9.2E-06 44.4 2.8 24 170-193 6-29 (170)
490 1wms_A RAB-9, RAB9, RAS-relate 87.5 0.27 9.2E-06 44.9 2.8 25 169-193 6-30 (177)
491 2bov_A RAla, RAS-related prote 87.5 0.34 1.2E-05 45.6 3.6 25 169-193 13-37 (206)
492 1u0l_A Probable GTPase ENGC; p 87.5 0.42 1.4E-05 48.2 4.4 34 151-193 159-192 (301)
493 1zj6_A ADP-ribosylation factor 87.5 0.59 2E-05 43.1 5.2 25 169-193 15-39 (187)
494 1qvr_A CLPB protein; coiled co 87.5 0.38 1.3E-05 56.7 4.6 50 144-193 559-611 (854)
495 3exa_A TRNA delta(2)-isopenten 87.4 0.32 1.1E-05 48.4 3.4 23 171-193 4-26 (322)
496 4dsu_A GTPase KRAS, isoform 2B 87.4 0.28 9.5E-06 45.4 2.8 24 170-193 4-27 (189)
497 2obl_A ESCN; ATPase, hydrolase 87.3 0.27 9.1E-06 50.6 2.8 25 169-193 70-94 (347)
498 2bme_A RAB4A, RAS-related prot 87.3 0.28 9.5E-06 45.3 2.8 25 169-193 9-33 (186)
499 1u0j_A DNA replication protein 87.3 0.57 1.9E-05 45.6 4.9 38 152-193 90-127 (267)
500 2e87_A Hypothetical protein PH 87.3 5.2 0.00018 41.3 12.8 25 169-193 166-190 (357)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-34 Score=335.33 Aligned_cols=555 Identities=16% Similarity=0.075 Sum_probs=329.9
Q ss_pred ccccceeeccccchhhcCCch--h---cccccchhccccc---chhhhc-cCCCCccEEeecCccccccc--C---CCCC
Q 003013 265 FPKLRRLSLHRCDKLQGTLPK--R---LLLLDTLYITSCD---QLLMTI-QCLPALSKLLIHGCKRVVFS--G---PMDL 330 (857)
Q Consensus 265 ~~~L~~l~~~~c~~l~~~lp~--~---l~~L~~l~~~~c~---~l~~~~-~~l~~l~~l~l~~~~~~~~~--~---~~~l 330 (857)
+++|+.|+++.|. +.+.+|. . +..|+.+.+..|. ..|..+ ..+++|+.|+++++...... . +..+
T Consensus 99 l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 5667777777765 3333454 3 3455566666653 233333 66778888888877643322 1 5677
Q ss_pred CCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCC
Q 003013 331 SSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTL 410 (857)
Q Consensus 331 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l 410 (857)
++|+.|++.++.-....+. ..+++|++|+++++.....++ .++.+ ++|++|++++|.....+|..+..+
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~-------~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l 246 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIP-------FLGDC-SALQHLDISGNKLSGDFSRAISTC 246 (768)
T ss_dssp TTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCC-------BCTTC-CSCCEEECCSSCCCSCHHHHTTTC
T ss_pred CCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCc-------ccccC-CCCCEEECcCCcCCCcccHHHhcC
Confidence 7888888877543222221 567788888888764322121 14555 778888888876655677778888
Q ss_pred CCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC-CCCCCCCccEEe
Q 003013 411 CSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP-EIALPSQLRTVR 489 (857)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~ 489 (857)
++|++|++++|.....+|.. .+++|++|++++|.....+|..+.. .+++|++|++++|.....+| .+..+++|++|+
T Consensus 247 ~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 324 (768)
T 3rgz_A 247 TELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324 (768)
T ss_dssp SSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEE
Confidence 88888888887554445544 6777777777777633356655442 13777777777764433444 346667777777
Q ss_pred ccccccccccChhhhccCCCCccEEEecCCCCCccccc-c-cCCCcccEEeeccCCC---------------chhhcccc
Q 003013 490 IQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIAR-I-QLPPSLKRLIVSDCCN---------------LRTLMAEQ 552 (857)
Q Consensus 490 l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~-~-~~~~~L~~L~l~~~~~---------------l~~~~~~~ 552 (857)
++++.....+|..... .+++|+.|++++|.-...++. + ...++|+.|+++++.- |+.+....
T Consensus 325 L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~ 403 (768)
T 3rgz_A 325 LSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403 (768)
T ss_dssp CCSSEEEEECCHHHHT-TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCS
T ss_pred CCCCcccCcCCHHHHh-cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCC
Confidence 7775544466655222 256777777776532211111 1 1122555555554321 11111100
Q ss_pred cccccCCCCCCccccCCCCCCCCCccEEEEeCCCCcccccc-CCCchhhHHHHHhhcCchhhhhhcc-CCCCcceeeccC
Q 003013 553 DICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSR-NGNLPRALKYLVSLCSKLESLAERL-DNTSLEGIFIYE 630 (857)
Q Consensus 553 ~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~L~~l~l~~ 630 (857)
+.. ...+|.....+++|+.|+++++.-...++. .+.++.+..+.+..+.-...++..+ ...+|+.|++.+
T Consensus 404 n~l--------~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 404 NGF--------TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp SEE--------EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred Ccc--------ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 000 001111111224555555555421111100 0011111111111111111122222 235788888888
Q ss_pred cCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccC
Q 003013 631 LENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 631 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
+.-...+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..+..+++|++|++++|+....+|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 65555778888888889999998887666777777788889999999887666888888888999999888875332333
Q ss_pred CC-----------------------------------------------------------------------CCCCCCC
Q 003013 711 ED-----------------------------------------------------------------------GFPTNLK 719 (857)
Q Consensus 711 ~~-----------------------------------------------------------------------~~~~~L~ 719 (857)
.. ..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 21 1236788
Q ss_pred eEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceeccC
Q 003013 720 SLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSY 796 (857)
Q Consensus 720 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 796 (857)
.|++++|.....++. .+..+++|+.|++++ +.-...+|. .+++|+.|+++++.--..+|.....+++|+.|++++
T Consensus 636 ~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp EEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred EEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999987666654 688899999999998 333346665 578999999999544447887778999999999999
Q ss_pred CCCCCCCCCCCccccccceeecCCcchH----HhhcCCCCCCCCcccCcCeE
Q 003013 797 CRKLTYFSKEGLPKSLLRLYINHCPLIE----ERCRKDEGKYWPMISHIPCV 844 (857)
Q Consensus 797 c~~l~~ip~~~l~~~L~~L~i~~c~~l~----~~~~~~~g~~w~~i~~i~~~ 844 (857)
|+.-..+|..+...++....+.|||.|. ..|....+++|++|+|++.+
T Consensus 714 N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------------
T ss_pred CcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 9777788987666777777777876442 37999999999999999875
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.9e-30 Score=306.19 Aligned_cols=517 Identities=15% Similarity=0.083 Sum_probs=328.1
Q ss_pred cccccchhccccc---chhh--hccCCCCccEEeecCcccccc---cCCCCCCCceEEecCCcccceeehhhh--hhcCC
Q 003013 287 LLLLDTLYITSCD---QLLM--TIQCLPALSKLLIHGCKRVVF---SGPMDLSSLKSVDLVDIANEVVLAGLF--EQDII 356 (857)
Q Consensus 287 l~~L~~l~~~~c~---~l~~--~~~~l~~l~~l~l~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~--~~~~~ 356 (857)
+..|+.+.+..|. .+|. .+..+++|++|++++|..... .....+++|+.|+++++.-....+..+ +..++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence 4567777787764 3566 889999999999999864322 123678999999999875443344443 68899
Q ss_pred CCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCC
Q 003013 357 SLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQ 435 (857)
Q Consensus 357 ~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~ 435 (857)
+|++|+++++. +... ..+..+ ++|++|++++|.....+|. ++.+++|++|++++|.....+| .++.+++
T Consensus 179 ~L~~L~Ls~n~-l~~~-------~~~~~l-~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 179 ELKHLAISGNK-ISGD-------VDVSRC-VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp TCCEEECCSSE-EESC-------CBCTTC-TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred CCCEEECCCCc-cccc-------CCcccC-CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 99999999975 3221 123455 8999999999876666676 9999999999999986554555 4788999
Q ss_pred cceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCC-CC-CCCccEEeccccccccccChhhhccCCCCccE
Q 003013 436 LRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEI-AL-PSQLRTVRIQECNALKSLPEAWMHNSNSSLES 513 (857)
Q Consensus 436 L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~-~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~ 513 (857)
|++|++++|.....+|.. .+++|++|++++|.....+|.. .. +++|++|+++++.....+|..+.. +++|+.
T Consensus 249 L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~ 322 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS--CSLLES 322 (768)
T ss_dssp CCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG--CTTCCE
T ss_pred CCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc--CCCccE
Confidence 999999998744445543 3899999999998655466643 33 599999999998765677777765 799999
Q ss_pred EEecCCCCCccccc--ccCCCcccEEeeccCCCchhhcccc-----ccc-ccCCCCCCcc-ccCCCCCC--CCCccEEEE
Q 003013 514 LEIRSCDSLTYIAR--IQLPPSLKRLIVSDCCNLRTLMAEQ-----DIC-SSSRGCTSLT-SFSSENDL--PATLEHLEV 582 (857)
Q Consensus 514 L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~-----~~~-~~~~~~~~l~-~~~~~~~~--~~~L~~L~l 582 (857)
|++++|.....++. +...++|+.|+++++.-...+...- ... ....++ .+. ..+..... +++|+.|++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L 401 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYL 401 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEEC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEEC
Confidence 99999764434443 4567899999998863211111000 000 000000 000 11111111 457888888
Q ss_pred eCCCCcccccc-CCCchhhHHHHHhhcCchhhhhhcc-CCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcc
Q 003013 583 SSCSNLAFLSR-NGNLPRALKYLVSLCSKLESLAERL-DNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLES 660 (857)
Q Consensus 583 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 660 (857)
.+|.-...++. ...++.+..+.+..+.--..++..+ ...+|+.|++.++.-...+|..+..+++|++|++++|.....
T Consensus 402 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 481 (768)
T 3rgz_A 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481 (768)
T ss_dssp CSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCc
Confidence 77632211111 0111111111111111001112222 124667777776554446677777777777777777755556
Q ss_pred cCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEecCCCCccccccc----
Q 003013 661 FPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEW---- 735 (857)
Q Consensus 661 l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~---- 735 (857)
+|..+..+++|++|++++|.....+|.++..+++|++|++++|.....+|.. ..+++|+.|++++|.....++..
T Consensus 482 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 6666666777788888777655577777777778888888777554455544 44577888888777544322211
Q ss_pred -----------------------------------------------------------------ccCCCCCccEeEEcC
Q 003013 736 -----------------------------------------------------------------GSNRFTSLRKLEIWG 750 (857)
Q Consensus 736 -----------------------------------------------------------------~~~~l~~L~~L~l~~ 750 (857)
.+..+++|+.|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 133456677777776
Q ss_pred CCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCCCCCCCCC-CccccccceeecCCc
Q 003013 751 PCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKE-GLPKSLLRLYINHCP 821 (857)
Q Consensus 751 ~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ip~~-~l~~~L~~L~i~~c~ 821 (857)
+.-...+|. .+++|+.|+++++.--..+|.....+++|+.|++++|..-..+|.. .-.++|+.|++++|+
T Consensus 642 -N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 642 -NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp -SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred -CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 322234444 4577777778774333367766677778888888877444466653 222577888887775
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=3.1e-28 Score=281.21 Aligned_cols=467 Identities=15% Similarity=0.112 Sum_probs=293.0
Q ss_pred cccchhccccc--chh-hhccCCCCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEec
Q 003013 289 LLDTLYITSCD--QLL-MTIQCLPALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQI 363 (857)
Q Consensus 289 ~L~~l~~~~c~--~l~-~~~~~l~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 363 (857)
.++.+.+..+. +++ .++..+++|+.|+++++..... ..+..+++|+.|+++++. +..++...+..+++|++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEc
Confidence 44555554442 222 3566677777777776654333 245567777777776643 44443444466777777777
Q ss_pred cCCCCcccccccccccCCCCCCCCCceEEEccCCCCCC-cchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCc----
Q 003013 364 KGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLT-KLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQL---- 436 (857)
Q Consensus 364 ~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L---- 436 (857)
+++. +..++.. .++.+ ++|++|++++|.... .+|..++.+++|++|++++|. +..++ .++.+.+|
T Consensus 112 ~~n~-l~~~~~~-----~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 112 VETK-LASLESF-----PIGQL-ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTSC-CCCSSSS-----CCTTC-TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCC
T ss_pred cCCc-ccccccc-----ccCCC-CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcccccc
Confidence 7653 3333321 24555 677777777765432 457777777777777777763 33332 13333333
Q ss_pred ceeeccccccccccchhhhcCCCCCccEEEEecCCCCCC-CC-CCCCCCCccEEecc-----------------------
Q 003013 437 RTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVS-FP-EIALPSQLRTVRIQ----------------------- 491 (857)
Q Consensus 437 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~----------------------- 491 (857)
.+|+++++. ++.++..... ..+|++|++++|..... ++ .+..+++|+.+++.
T Consensus 184 ~~L~l~~n~-l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~ 260 (606)
T 3vq2_A 184 LSLDMSLNP-IDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260 (606)
T ss_dssp CEEECTTCC-CCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred ceeeccCCC-cceeCccccc--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence 367777665 5666655543 44777777776543211 11 12334444443331
Q ss_pred ---------ccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCC
Q 003013 492 ---------ECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCT 562 (857)
Q Consensus 492 ---------~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 562 (857)
.+..+......+ ..+++|+.|+++++. +..++.+...++|+.|.+.++.- .
T Consensus 261 l~l~~l~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~-~~~l~~l~~~~~L~~L~l~~n~l-~---------------- 320 (606)
T 3vq2_A 261 VTIDEFRLTYTNDFSDDIVKF--HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQL-K---------------- 320 (606)
T ss_dssp SEEEEEEECCCTTCCGGGGSC--GGGTTCSEEEEESCC-CCCCCCCCTTCCCSEEEEESCCC-S----------------
T ss_pred ccHhheecccccccccccccc--ccCCCCCEEEecCcc-chhhhhccccccCCEEEcccccC-c----------------
Confidence 111111111111 124566666666643 34444444445666666655432 1
Q ss_pred CccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCcccc---Cc
Q 003013 563 SLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSL---PA 639 (857)
Q Consensus 563 ~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l---~~ 639 (857)
.+|.. .+++|+.|+++++..+.... ....++|+.|+++++ .+..+ +.
T Consensus 321 ---~lp~~--~l~~L~~L~l~~n~~~~~~~------------------------~~~l~~L~~L~ls~n-~l~~~~~~~~ 370 (606)
T 3vq2_A 321 ---QFPTL--DLPFLKSLTLTMNKGSISFK------------------------KVALPSLSYLDLSRN-ALSFSGCCSY 370 (606)
T ss_dssp ---SCCCC--CCSSCCEEEEESCSSCEECC------------------------CCCCTTCCEEECCSS-CEEEEEECCH
T ss_pred ---ccccC--CCCccceeeccCCcCccchh------------------------hccCCCCCEEECcCC-ccCCCcchhh
Confidence 22211 23567777777774443221 112357888888874 44444 66
Q ss_pred CCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCCCCcccCCC-CCCCC
Q 003013 640 GLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCPSVVSFPED-GFPTN 717 (857)
Q Consensus 640 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~ 717 (857)
.+..+++|++|++++|. +..+|..+..+++|++|++++|......| ..+..+++|++|++++|......|.. ..+++
T Consensus 371 ~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 371 SDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp HHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred hhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 77889999999999984 77788788889999999999987555555 47889999999999999654444443 55789
Q ss_pred CCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCCCccc-CCCCCCccccCce
Q 003013 718 LKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPDLECL-SSIGENLTSLKTL 792 (857)
Q Consensus 718 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L 792 (857)
|+.|++++|.......+..+..+++|++|++++ | .+..+++ .+++|++|+++++ .++.+ |.....+++|++|
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK-C-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEE
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCC-C-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEE
Confidence 999999999876654555788999999999998 4 4444432 5789999999996 56655 6556889999999
Q ss_pred eccCCCCCCCCCCC--CccccccceeecCCcc
Q 003013 793 RLSYCRKLTYFSKE--GLPKSLLRLYINHCPL 822 (857)
Q Consensus 793 ~l~~c~~l~~ip~~--~l~~~L~~L~i~~c~~ 822 (857)
++++| .++.+|.. .+|++|+.|+++++|-
T Consensus 527 ~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 527 DCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ECTTS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ECCCC-cCcccCHhHhhhcccCcEEEccCCCc
Confidence 99999 68888875 4456799999998763
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=3.7e-26 Score=263.88 Aligned_cols=196 Identities=17% Similarity=0.096 Sum_probs=139.4
Q ss_pred CCcceeeccCcCCcccc---CcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc-cCCCCCCcc
Q 003013 621 TSLEGIFIYELENLKSL---PAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN-CMHNLTSLL 696 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~ 696 (857)
.+|+.|+++++ .+..+ +..+..+++|++|++++|......+..+..+++|++|++++|......+. .+..+++|+
T Consensus 350 ~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 46777777764 33333 56678899999999998854444455677788999999998765444443 478899999
Q ss_pred EEeecCCCCCcccCCC-CCCCCCCeEEecCCCCcccc--cccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEe
Q 003013 697 NLEIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKAL--LEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELW 769 (857)
Q Consensus 697 ~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~ 769 (857)
+|++++|......+.. ..+++|++|++++|...... ....+..+++|++|++++ | .+..+++ .+++|++|+
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~-n-~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF-C-DLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEE
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC-C-ccCccChhhhccccCCCEEE
Confidence 9999998543333332 45789999999999865422 123577889999999998 3 4444432 568999999
Q ss_pred cCCCCCCccc-CCCCCCccccCceeccCCCCCCCCCCCCc--cccccceeecCCcc
Q 003013 770 ISFMPDLECL-SSIGENLTSLKTLRLSYCRKLTYFSKEGL--PKSLLRLYINHCPL 822 (857)
Q Consensus 770 l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ip~~~l--~~~L~~L~i~~c~~ 822 (857)
++++ +++.+ |.....+++| .|++++| .+..++...+ .++|+.|++++||-
T Consensus 507 Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 507 LSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CCCC-ccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 9995 55554 4344788899 9999999 5666655432 36899999999874
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.5e-26 Score=267.16 Aligned_cols=474 Identities=17% Similarity=0.122 Sum_probs=333.2
Q ss_pred ccccceeeccccchhhcCCc---hhcccccchhccccc--ch-hhhccCCCCccEEeecCcccccc--cCCCCCCCceEE
Q 003013 265 FPKLRRLSLHRCDKLQGTLP---KRLLLLDTLYITSCD--QL-LMTIQCLPALSKLLIHGCKRVVF--SGPMDLSSLKSV 336 (857)
Q Consensus 265 ~~~L~~l~~~~c~~l~~~lp---~~l~~L~~l~~~~c~--~l-~~~~~~l~~l~~l~l~~~~~~~~--~~~~~l~~L~~l 336 (857)
.+.++.|++..+. +.+..| ..+..|+.+.+..|. ++ |.++..+++|+.|+++++..... .++..+++|+.|
T Consensus 31 ~~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCC-cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 4678888888764 222223 245677778887764 33 55788999999999999875444 467889999999
Q ss_pred ecCCcccceeehhhhhhcCCCCCeEeccCCCCccc--ccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCc
Q 003013 337 DLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLS--LVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLT 414 (857)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 414 (857)
+++++. +..++...+..+++|++|+++++. +.. +|.. ++.+ ++|++|++++|......|..++.+.+|+
T Consensus 110 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~------~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 110 VAVETK-LASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY------FSNL-TNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp ECTTSC-CCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG------GGTC-TTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred EccCCc-cccccccccCCCCCCCEEeCCCCc-ccceechHh------Hhhc-CCCCEEEccCCcceecChhhhhhhhccc
Confidence 999864 445554557899999999999975 332 3333 5667 8999999999865444455566665554
Q ss_pred ----EEeEcCCCCCCcCC-CCCCCCCcceeeccccccc-cccchhhhcCCCCCccEEEEe--------------------
Q 003013 415 ----DMKILGCASLVSFP-EVALPSQLRTVRIQECNAL-KSLPEAWMYNSNSSLESLKIR-------------------- 468 (857)
Q Consensus 415 ----~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~l~~L~~L~l~-------------------- 468 (857)
+|++++|. +..++ ......+|++|+++++... ..+|..+.. +++|+.+++.
T Consensus 181 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~--l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 181 QVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN--LAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp TCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHT--TTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred cccceeeccCCC-cceeCcccccCceeeeeeccCCccchhHHHHHhcc--ccccccccccccccccCCcccccChHHhhh
Confidence 89999984 55554 3444559999999987622 223333333 5555555442
Q ss_pred ------------cCCCC-CCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCccc
Q 003013 469 ------------SCNSL-VSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLK 535 (857)
Q Consensus 469 ------------~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 535 (857)
.+..+ ..++.+..+++|+.|+++++. +..+| .+ ..+++|+.|++++|.. +.++.. ..++|+
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~-~l--~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~ 331 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DV--PKHFKWQSLSIIRCQL-KQFPTL-DLPFLK 331 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC-CCCCC-CC--CTTCCCSEEEEESCCC-SSCCCC-CCSSCC
T ss_pred hhhccHhheeccccccccccccccccCCCCCEEEecCcc-chhhh-hc--cccccCCEEEcccccC-cccccC-CCCccc
Confidence 22222 223345667889999999854 56777 33 2368999999999866 777766 778888
Q ss_pred EEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhh
Q 003013 536 RLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLA 615 (857)
Q Consensus 536 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 615 (857)
.|+++++..+..+ .+ ..+++|+.|+++++. ++.... .+..
T Consensus 332 ~L~l~~n~~~~~~-----------------~~----~~l~~L~~L~ls~n~-l~~~~~---~~~~--------------- 371 (606)
T 3vq2_A 332 SLTLTMNKGSISF-----------------KK----VALPSLSYLDLSRNA-LSFSGC---CSYS--------------- 371 (606)
T ss_dssp EEEEESCSSCEEC-----------------CC----CCCTTCCEEECCSSC-EEEEEE---CCHH---------------
T ss_pred eeeccCCcCccch-----------------hh----ccCCCCCEEECcCCc-cCCCcc---hhhh---------------
Confidence 8888887544322 01 133689999998872 221100 0000
Q ss_pred hccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccC-CCCCCCCCcceEeeccccCcccCcccCCCCCC
Q 003013 616 ERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFP-EEGLPSTKLTELSIRECENLKALPNCMHNLTS 694 (857)
Q Consensus 616 ~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 694 (857)
.....+|+.|+++++ .+..+|..+..+++|+.|++++|......+ ..+..+++|++|++++|......|..+..+++
T Consensus 372 -~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 449 (606)
T 3vq2_A 372 -DLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449 (606)
T ss_dssp -HHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred -hccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence 112357888888874 477788889999999999999985444444 35677899999999998877777888999999
Q ss_pred ccEEeecCCCCCcc-cCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCC-CC---CCCCCCeE
Q 003013 695 LLNLEIRRCPSVVS-FPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSP-PP---FPASLTEL 768 (857)
Q Consensus 695 L~~L~l~~c~~l~~-l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~-~~---~~~~L~~L 768 (857)
|++|++++|..... +|.. ..+++|+.|++++|.... +.+..+..+++|++|++++ + .+..+ |. .+++|++|
T Consensus 450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~-N-~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSH-N-NLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCS-S-CCSCEEGGGTTTCTTCCEE
T ss_pred CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCC-C-cCCCcCHHHccCCCcCCEE
Confidence 99999999954332 4543 567999999999997644 4444688999999999998 3 55544 32 57899999
Q ss_pred ecCCCCCCcccCCCCCCcc-ccCceeccCCCCCCCC
Q 003013 769 WISFMPDLECLSSIGENLT-SLKTLRLSYCRKLTYF 803 (857)
Q Consensus 769 ~l~~~~~l~~l~~~~~~l~-~L~~L~l~~c~~l~~i 803 (857)
+++++ +++.+|.....++ +|+.|++++||-.-..
T Consensus 527 ~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 527 DCSFN-RIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp ECTTS-CCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred ECCCC-cCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 99994 6999997777787 6999999999755433
No 6
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.6e-25 Score=255.36 Aligned_cols=448 Identities=16% Similarity=0.174 Sum_probs=270.8
Q ss_pred CCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCC
Q 003013 331 SSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTL 410 (857)
Q Consensus 331 ~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l 410 (857)
+.++.|+++++. +..++...+..+++|++|+++++. +..++.. .+..+ ++|++|++++|......|..++.+
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~-----~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGD-----AFYSL-GSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTT-----TTTTC-TTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChh-----hcccc-ccCCEEECCCCccCccCHHHhccC
Confidence 345556655543 334444444667777777777753 4433321 24555 677777777765433344447777
Q ss_pred CCCcEEeEcCCCCCC-cC-CCCCCCCCcceeeccccccccccch-hhhcCCCCCccEEEEecCCCCCCCC-CCCCCCCcc
Q 003013 411 CSLTDMKILGCASLV-SF-PEVALPSQLRTVRIQECNALKSLPE-AWMYNSNSSLESLKIRSCNSLVSFP-EIALPSQLR 486 (857)
Q Consensus 411 ~~L~~L~l~~~~~l~-~~-~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~ 486 (857)
++|++|++++|.... .. +.++.+++|++|+++++..+..+|. .+.. +++|++|++++|......| .+..+++|+
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG--LTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--CCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc--ccccCeeeccCCcccccChhhhhccccCc
Confidence 777777777763222 12 2356677777777777665555553 3333 7777777777765433333 345667777
Q ss_pred EEeccccccccccChhhhccCCCCccEEEecCCCCCcc----cccccCCCcccEEeeccCCC-----------------c
Q 003013 487 TVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTY----IARIQLPPSLKRLIVSDCCN-----------------L 545 (857)
Q Consensus 487 ~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~----l~~~~~~~~L~~L~l~~~~~-----------------l 545 (857)
.|+++++. ...+|..+.. .+++|+.|+++++.-... .+.....+.++.|.+.++.- +
T Consensus 176 ~L~l~~n~-~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 176 HLTLHLSE-SAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEECSB-STTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred eEecccCc-ccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 77777643 3445554432 256777777776432221 11122345566666554311 1
Q ss_pred hhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcce
Q 003013 546 RTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEG 625 (857)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~ 625 (857)
+.+................ ... ....+++++.|.+.++.-- .......++... .....++.
T Consensus 254 ~~l~l~~~~~~~~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~-~~~~~~~l~~~~----------------~~~~~L~~ 314 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPS-ESD-VVSELGKVETVTIRRLHIP-QFYLFYDLSTVY----------------SLLEKVKR 314 (549)
T ss_dssp CEEEEESCEEECCSCCCCC-TTT-CCCCCTTCCEEEEESCBCS-CGGGSCCCCHHH----------------HHSTTCCE
T ss_pred ccccccccccccccccccc-chh-hhhhhcccccccccccccc-hhhhcccchhhh----------------hhcccceE
Confidence 1111000000000000000 000 0012346666666665211 110001111000 01246788
Q ss_pred eeccCcCCccccCcCC-CCCCCCCeEEeecCCCCcccC---CCCCCCCCcceEeeccccCcccCc---ccCCCCCCccEE
Q 003013 626 IFIYELENLKSLPAGL-HNLHHLQKISIADCPNLESFP---EEGLPSTKLTELSIRECENLKALP---NCMHNLTSLLNL 698 (857)
Q Consensus 626 l~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~---~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L 698 (857)
+++.+ ..+..+|..+ ..+++|++|++++|.....+| .....+++|++|++++|. ++.++ ..+..+++|++|
T Consensus 315 L~l~~-n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 315 ITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp EEEES-SCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEE
T ss_pred EEecc-CccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEE
Confidence 88887 4577888766 468999999999986554443 335678899999999975 65554 347789999999
Q ss_pred eecCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCc
Q 003013 699 EIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLE 777 (857)
Q Consensus 699 ~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 777 (857)
++++| .++.+|.. ..+++|+.|++++|... .++. .-.++|++|++++ +.+..++..+++|++|++++ ++++
T Consensus 393 ~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~---~~~~~L~~L~Ls~--N~l~~~~~~l~~L~~L~Ls~-N~l~ 464 (549)
T 2z81_A 393 DISRN-TFHPMPDSCQWPEKMRFLNLSSTGIR-VVKT---CIPQTLEVLDVSN--NNLDSFSLFLPRLQELYISR-NKLK 464 (549)
T ss_dssp ECTTC-CCCCCCSCCCCCTTCCEEECTTSCCS-CCCT---TSCTTCSEEECCS--SCCSCCCCCCTTCCEEECCS-SCCS
T ss_pred ECCCC-CCccCChhhcccccccEEECCCCCcc-cccc---hhcCCceEEECCC--CChhhhcccCChhcEEECCC-CccC
Confidence 99999 67778765 56789999999999753 3322 1236899999998 46777778889999999999 5888
Q ss_pred ccCCCCCCccccCceeccCCCCCCCCCCCCc--cccccceeecCCc
Q 003013 778 CLSSIGENLTSLKTLRLSYCRKLTYFSKEGL--PKSLLRLYINHCP 821 (857)
Q Consensus 778 ~l~~~~~~l~~L~~L~l~~c~~l~~ip~~~l--~~~L~~L~i~~c~ 821 (857)
.+|. ...+++|+.|++++| .++.++...+ .++|+.|++++||
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 8885 567999999999999 6777766422 3789999998876
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=3.6e-25 Score=259.23 Aligned_cols=519 Identities=17% Similarity=0.110 Sum_probs=277.5
Q ss_pred cccceeeccccchhhcCCc-h---hcccccchhccccc---chhhhccCCCCccEEeecCccccccc--CCCCCCCceEE
Q 003013 266 PKLRRLSLHRCDKLQGTLP-K---RLLLLDTLYITSCD---QLLMTIQCLPALSKLLIHGCKRVVFS--GPMDLSSLKSV 336 (857)
Q Consensus 266 ~~L~~l~~~~c~~l~~~lp-~---~l~~L~~l~~~~c~---~l~~~~~~l~~l~~l~l~~~~~~~~~--~~~~l~~L~~l 336 (857)
+.++.|++..+. +. ++| . .+..|+.+.+..+. ..|.++..+++|+.|++.++.-.... ++..+++|+.|
T Consensus 25 ~~l~~L~Ls~n~-l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSC-CC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCC-CC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 456677666653 22 233 2 23345555554442 22445666677777777766533333 35666777777
Q ss_pred ecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhC--CCCCCc
Q 003013 337 DLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALL--TLCSLT 414 (857)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~--~l~~L~ 414 (857)
+++++. +..++...+..+++|++|+++++. +...+.. .+..+ ++|++|++++|......+..+. .+++|+
T Consensus 103 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 103 HLMSNS-IQKIKNNPFVKQKNLITLDLSHNG-LSSTKLG-----TQVQL-ENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp ECCSSC-CCCCCSCTTTTCTTCCEEECCSSC-CSCCCCC-----SSSCC-TTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred ECCCCc-cCccChhHccccCCCCEEECCCCc-ccccCch-----hhccc-ccCCEEEccCCcccccCHHHhhcccccccc
Confidence 776643 344554555667777777777653 2222111 23444 6677777776543222333332 346677
Q ss_pred EEeEcCCCCCCcCC-C-CCCC---------------------------CCcceeecccccccccc-chhhhcCCCCCccE
Q 003013 415 DMKILGCASLVSFP-E-VALP---------------------------SQLRTVRIQECNALKSL-PEAWMYNSNSSLES 464 (857)
Q Consensus 415 ~L~l~~~~~l~~~~-~-~~~l---------------------------~~L~~L~l~~~~~l~~l-~~~~~~~~l~~L~~ 464 (857)
+|++++|. +..++ . +..+ ++|++|+++++. +..+ |..+..-..++|++
T Consensus 175 ~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 175 KLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp EEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCE
T ss_pred EEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-ccccChhHhhccCcCCCCE
Confidence 77777663 33222 1 2223 334444444433 2222 22222100123555
Q ss_pred EEEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcc-----cc-----cccCCCc
Q 003013 465 LKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTY-----IA-----RIQLPPS 533 (857)
Q Consensus 465 L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~-----l~-----~~~~~~~ 533 (857)
|++++|......+ .+..+++|++|+++++......|..+.. +++|+.|+++++..-.. ++ .+...++
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG--LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT--CTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC--CCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 5555543221111 2345555666666554322222222222 45555555554321110 00 1112234
Q ss_pred ccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCC-ccccccCCCchh----hHHHHHhhc
Q 003013 534 LKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSN-LAFLSRNGNLPR----ALKYLVSLC 608 (857)
Q Consensus 534 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~----~~~~~~~~~ 608 (857)
|+.|+++++. +..+ .+.....+++|++|+++++.. +..+... .+.. .+..+....
T Consensus 331 L~~L~l~~n~-l~~~------------------~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~-~f~~~~~~~L~~L~L~~ 390 (680)
T 1ziw_A 331 LEHLNMEDND-IPGI------------------KSNMFTGLINLKYLSLSNSFTSLRTLTNE-TFVSLAHSPLHILNLTK 390 (680)
T ss_dssp CCEEECCSCC-BCCC------------------CTTTTTTCTTCCEEECTTCBSCCCEECTT-TTGGGTTSCCCEEECTT
T ss_pred CCEEECCCCc-cCCC------------------ChhHhccccCCcEEECCCCchhhhhcchh-hhcccccCcCceEECCC
Confidence 4444433321 0000 000011224566666655421 1111000 0000 000000000
Q ss_pred Cchhhhhh-cc-CCCCcceeeccCcCCccccC-cCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccC--cc
Q 003013 609 SKLESLAE-RL-DNTSLEGIFIYELENLKSLP-AGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECEN--LK 683 (857)
Q Consensus 609 ~~l~~l~~-~~-~~~~L~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~--l~ 683 (857)
..+..+.+ .+ ...+|+.|+++++.-...+| ..+..+++|++|++++|......+..+..+++|+.|+++++.. +.
T Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 470 (680)
T 1ziw_A 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTT
T ss_pred CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccc
Confidence 11111111 11 13467777777644333444 4567788888888888753333344556678888888887653 35
Q ss_pred cCcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccc-------cccccCCCCCccEeEEcCCCCC
Q 003013 684 ALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKAL-------LEWGSNRFTSLRKLEIWGPCPD 754 (857)
Q Consensus 684 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~ 754 (857)
.+|..+..+++|+.|++++| .+..++.. ..+++|+.|++++|...... +...+..+++|++|++++ +.
T Consensus 471 ~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~ 547 (680)
T 1ziw_A 471 SSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NG 547 (680)
T ss_dssp CSSCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SC
T ss_pred cCCcccccCCCCCEEECCCC-CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CC
Confidence 67778889999999999998 46666654 45689999999998764321 112367889999999997 46
Q ss_pred CCCCCC----CCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCCCCCCCCCCc---cccccceeecCCcch
Q 003013 755 LVSPPP----FPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYFSKEGL---PKSLLRLYINHCPLI 823 (857)
Q Consensus 755 l~~~~~----~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~~l---~~~L~~L~i~~c~~l 823 (857)
+..+|. .+++|+.|++++ ++++.+|... ..+++|+.|++++| .++.++...+ .++|+.|++++||-.
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 667765 468999999988 6899998766 78999999999999 7887776422 368999999998743
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2.5e-25 Score=256.96 Aligned_cols=492 Identities=16% Similarity=0.127 Sum_probs=238.5
Q ss_pred CceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCC
Q 003013 332 SLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLC 411 (857)
Q Consensus 332 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~ 411 (857)
.++.|++++. .+..++...+..+++|++|+++++. +..+.. ..+..+ ++|++|+|++|......|..++.++
T Consensus 34 ~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-----~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHE-----DTFQSQ-HRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCC-CCEECT-----TTTTTC-TTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcEEEccCC-ccCcCChhHhccCccceEEECCCCc-cceeCh-----hhccCc-cccCeeeCCCCcccccChhhhcccc
Confidence 4788888774 3455655556788888888888864 333321 125566 7888888888765455577788888
Q ss_pred CCcEEeEcCCCCCCcC--CCCCCCCCcceeeccccccccccc-hhhhcCCCCCccEEEEecCCCCCCCC--CCCCCCCcc
Q 003013 412 SLTDMKILGCASLVSF--PEVALPSQLRTVRIQECNALKSLP-EAWMYNSNSSLESLKIRSCNSLVSFP--EIALPSQLR 486 (857)
Q Consensus 412 ~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~ 486 (857)
+|++|++++|. +..+ ..++.+++|++|+++++. +..++ ..+.. +++|++|++++|. +..++ .+..+++|+
T Consensus 106 ~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 106 ALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFP--TEKLKVLDFQNNA-IHYLSKEDMSSLQQAT 180 (606)
T ss_dssp TCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCC--CTTCCEEECCSSC-CCEECHHHHHTTTTCC
T ss_pred cccEeeccccC-cccCCcchhccCCcccEEECCCCc-ccccCcccccC--CcccCEEEcccCc-ccccChhhhhhhcccc
Confidence 88888888874 4443 246678888888888876 55542 22222 7888888887764 34433 245667777
Q ss_pred --EEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccc--------
Q 003013 487 --TVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICS-------- 556 (857)
Q Consensus 487 --~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-------- 556 (857)
.|+++++. +..+++..+. ..+|+.|++.+|..+......-....+..+.+..+..+...........
T Consensus 181 ~l~L~l~~n~-l~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 181 NLSLNLNGND-IAGIEPGAFD--SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp SEEEECTTCC-CCEECTTTTT--TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred eeEEecCCCc-cCccChhHhh--hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 77888754 4445444433 3678888887765322111000001111222221111110000000000
Q ss_pred --cCCCCCCccccCCC-CCCCCCccEEEEeCCCCcccccc-CCCchhhHHHHHhhcCchhhhhh-c-cCCCCcceeeccC
Q 003013 557 --SSRGCTSLTSFSSE-NDLPATLEHLEVSSCSNLAFLSR-NGNLPRALKYLVSLCSKLESLAE-R-LDNTSLEGIFIYE 630 (857)
Q Consensus 557 --~~~~~~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~l~~-~-~~~~~L~~l~l~~ 630 (857)
... -..+..++.. ...+++|++|+++++ .++.++. ...++.+..+.+..+ .+..+++ . ...++|+.|++.+
T Consensus 258 ~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 258 SINLQ-KHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEECT-TCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCS
T ss_pred EEEee-cCccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCC
Confidence 000 0011111111 112346666666665 2222221 111111111111111 1111111 1 1124555555555
Q ss_pred cCCccccCcC-CCCCCCCCeEEeecCCCCccc--CCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCc
Q 003013 631 LENLKSLPAG-LHNLHHLQKISIADCPNLESF--PEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVV 707 (857)
Q Consensus 631 ~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l--~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~ 707 (857)
+.....++.. +..+++|++|++++|...... +..+..+++|++|++++|......|..+..+++|++|++++|....
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 4333333332 455566666666655322211 3344455566666666554333334455556666666666553222
Q ss_pred ccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCC--C-----CCCCCCCCeEecCCCCCCcc
Q 003013 708 SFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVS--P-----PPFPASLTELWISFMPDLEC 778 (857)
Q Consensus 708 ~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~--~-----~~~~~~L~~L~l~~~~~l~~ 778 (857)
..+.. ..+++|+.|++++|..... .+..+..+++|++|++++ +. +.. + ...+++|++|++++| .++.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~-n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~ 490 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLPALQHLNLQG-NH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSS 490 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCTTCCEEECTT-CB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCE
T ss_pred cccchhhhCcccCCEEECCCCccCCc-CHHHHhCCCCCCEEECCC-CC-CCccccccchhhccCCCccEEECCCC-ccCc
Confidence 22221 2345566666666554322 222455566666666665 22 111 1 113456666666663 3444
Q ss_pred c-CCCCCCccccCceeccCCCCCCCCCCCCc--cccccceeecCCcchHHhhcCCCCCCCCcccCcCeEEECCeEeec
Q 003013 779 L-SSIGENLTSLKTLRLSYCRKLTYFSKEGL--PKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFD 853 (857)
Q Consensus 779 l-~~~~~~l~~L~~L~l~~c~~l~~ip~~~l--~~~L~~L~i~~c~~l~~~~~~~~g~~w~~i~~i~~~~~~~~~~~~ 853 (857)
+ |.....+++|+.|++++| .+..++...+ .++| .|++++|.... ...+.+.....+..+.+.++.+.+
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISI-----ILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCC-----CCGGGHHHHHTSSEEECTTCCEEC
T ss_pred cChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccc-----cCHhhcccCCCCCEEeCCCCCccc
Confidence 4 223355666666666666 3333222111 1345 56666553211 011122344556677777666554
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=5.5e-25 Score=257.61 Aligned_cols=177 Identities=13% Similarity=0.110 Sum_probs=138.0
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCC--CcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccE
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPN--LESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~--l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~ 697 (857)
.+|+.++++++.-....+..+..+++|+.|++++|.. +..+|..+..+++|+.|++++|. ++.++ ..+..+++|++
T Consensus 430 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~ 508 (680)
T 1ziw_A 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEI 508 (680)
T ss_dssp TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCE
Confidence 5788888888653333466788899999999998852 35677788889999999999976 55555 45889999999
Q ss_pred EeecCCCCCcccCC----------CCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCC
Q 003013 698 LEIRRCPSVVSFPE----------DGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPA 763 (857)
Q Consensus 698 L~l~~c~~l~~l~~----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~ 763 (857)
|++++|. +..++. ...+++|+.|++++|... .++...+..+++|++|++++ +.+..+|+ .++
T Consensus 509 L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~--N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 509 LDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGL--NNLNTLPASVFNNQV 584 (680)
T ss_dssp EECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCT
T ss_pred EeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCC--CCCCcCCHhHhCCCC
Confidence 9999984 554421 134589999999999664 66666789999999999987 57777776 458
Q ss_pred CCCeEecCCCCCCcccCCCC-C-CccccCceeccCCCCCCCC
Q 003013 764 SLTELWISFMPDLECLSSIG-E-NLTSLKTLRLSYCRKLTYF 803 (857)
Q Consensus 764 ~L~~L~l~~~~~l~~l~~~~-~-~l~~L~~L~l~~c~~l~~i 803 (857)
+|+.|++++ +.++.++... . .+++|+.|++++||-.-.-
T Consensus 585 ~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 585 SLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp TCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCEEECCC-CcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999 5788877543 3 6899999999999765443
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=6.7e-26 Score=260.90 Aligned_cols=147 Identities=16% Similarity=0.210 Sum_probs=64.6
Q ss_pred CCCCCCeEEeecCCCCcccCCCCC-CCCCcceEeeccccCcccCcccCCC--------CCCccEEeecCCCCCcccCCC-
Q 003013 643 NLHHLQKISIADCPNLESFPEEGL-PSTKLTELSIRECENLKALPNCMHN--------LTSLLNLEIRRCPSVVSFPED- 712 (857)
Q Consensus 643 ~l~~L~~L~l~~c~~l~~l~~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~--------l~~L~~L~l~~c~~l~~l~~~- 712 (857)
.+++|++|++++| .+..+|.... .+++|++|++++|. +..+|..... +++|++|++++| .+..+|..
T Consensus 431 ~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~ 507 (636)
T 4eco_A 431 KGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDF 507 (636)
T ss_dssp CCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGG
T ss_pred cCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhh
Confidence 4445555555554 2334443322 24455555555543 3344432211 125555555555 23344433
Q ss_pred C--CCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCC-----CCCCCCCCC---CCCCCCeEecCCCCCCcccCCC
Q 003013 713 G--FPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGP-----CPDLVSPPP---FPASLTELWISFMPDLECLSSI 782 (857)
Q Consensus 713 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-----~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~ 782 (857)
. .+++|+.|++++|.... ++. .+..+++|++|+++++ +.-...+|. .+++|++|++++ +.++.+|..
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~ip~~ 584 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS-NDIRKVNEK 584 (636)
T ss_dssp STTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS-SCCCBCCSC
T ss_pred hhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC-CcCCccCHh
Confidence 1 34555555555554433 222 3444555555555431 111222232 234455555555 233444433
Q ss_pred CCCccccCceeccCC
Q 003013 783 GENLTSLKTLRLSYC 797 (857)
Q Consensus 783 ~~~l~~L~~L~l~~c 797 (857)
.. ++|+.|++++|
T Consensus 585 ~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 585 IT--PNISVLDIKDN 597 (636)
T ss_dssp CC--TTCCEEECCSC
T ss_pred Hh--CcCCEEECcCC
Confidence 22 45555555555
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2.4e-24 Score=256.90 Aligned_cols=477 Identities=15% Similarity=0.098 Sum_probs=298.0
Q ss_pred CCCCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCC
Q 003013 307 CLPALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPE 384 (857)
Q Consensus 307 ~l~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~ 384 (857)
..++++.|+++++..... .++..+++|+.|+++++.....++...+..+++|++|+++++. +..+.. ..+..
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p-----~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHP-----DAFQG 95 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECT-----TSSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCH-----hHccC
Confidence 346778888887764332 3677788888888888766666766666888888888888864 443321 13666
Q ss_pred CCCCceEEEccCCCCCCcchhh--hCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeeccccccccccchhhhcCCC-
Q 003013 385 LPCRLRFLELSYCQGLTKLPQA--LLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSLPEAWMYNSN- 459 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp~~--~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l- 459 (857)
+ ++|++|+|++|.....+|.. +..+++|++|++++|......+ .++.+++|++|+++++..-...+..+.. +
T Consensus 96 l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~--l~ 172 (844)
T 3j0a_A 96 L-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP--LQ 172 (844)
T ss_dssp C-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH--HH
T ss_pred C-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc--cc
Confidence 7 88888888887655555554 7888888888888875433322 3677888888888887632333444443 4
Q ss_pred -CCccEEEEecCCCCCCCC-CCCCCC------CccEEeccccccccccChhhhcc-CCCCccEEEecCCCC--------C
Q 003013 460 -SSLESLKIRSCNSLVSFP-EIALPS------QLRTVRIQECNALKSLPEAWMHN-SNSSLESLEIRSCDS--------L 522 (857)
Q Consensus 460 -~~L~~L~l~~~~~~~~~~-~~~~~~------~L~~L~l~~~~~l~~lp~~~~~~-~l~~L~~L~l~~c~~--------l 522 (857)
++|+.|++++|......+ .+..+. .|+.|+++++..-...+..+... ...++..|.+..+.. +
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 788888888775544433 223333 38888888864433444433321 125677777653211 1
Q ss_pred cccccc----cCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCch
Q 003013 523 TYIARI----QLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLP 598 (857)
Q Consensus 523 ~~l~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 598 (857)
...... ..+++++.|+++++. +..+ .+.....+++|+.|+++++.- ..+... .
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~------------------~~~~~~~l~~L~~L~L~~n~i-~~~~~~-~-- 309 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGF-VFSL------------------NSRVFETLKDLKVLNLAYNKI-NKIADE-A-- 309 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCC-CCEE------------------CSCCSSSCCCCCEEEEESCCC-CEECTT-T--
T ss_pred CCCChhhhhccccCCccEEECCCCc-cccc------------------ChhhhhcCCCCCEEECCCCcC-CCCChH-H--
Confidence 111100 012566666665542 1111 011111346788888888632 211100 0
Q ss_pred hhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCcccc-CcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEee
Q 003013 599 RALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSL-PAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSI 676 (857)
Q Consensus 599 ~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l 676 (857)
-....+|+.|+++++ .+..+ +..+..+++|+.|++++| .+..++. .+..+++|++|++
T Consensus 310 ------------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 310 ------------------FYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp ------------------TTTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEE
T ss_pred ------------------hcCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEEC
Confidence 011357788888874 44444 667888999999999988 4555554 4566889999999
Q ss_pred ccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-----------------------CCCCCCCeEEecCCCCccccc
Q 003013 677 RECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-----------------------GFPTNLKSLKVHDLKISKALL 733 (857)
Q Consensus 677 ~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-----------------------~~~~~L~~L~l~~~~~~~~~~ 733 (857)
++|. ++.++ .+++|+.|.+++| .+..+|.. ..+++|+.|++++|.......
T Consensus 370 s~N~-l~~i~----~~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 370 RDNA-LTTIH----FIPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp ETCC-SCCCS----SCCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCCC-CCccc----CCCCcchhccCCC-CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 9865 55443 3677888887776 34444432 134667777777776543322
Q ss_pred ccccCCCCCccEeEEcCCCCCCCCC---------CCCCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCCCCCC
Q 003013 734 EWGSNRFTSLRKLEIWGPCPDLVSP---------PPFPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYF 803 (857)
Q Consensus 734 ~~~~~~l~~L~~L~l~~~~~~l~~~---------~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i 803 (857)
...+..+++|+.|+++++ .+..+ ...+++|+.|++++ ++++.++... ..+++|+.|++++| .++.+
T Consensus 444 ~~~~~~~~~L~~L~Ls~N--~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l 519 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGEN--MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVL 519 (844)
T ss_dssp SSSSCSCTTCCBCEEESC--CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESC-CCSSC
T ss_pred ccccccCCccccccCCCC--ccccccccccchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCCC-CCCcc
Confidence 223455677888888762 23211 12457888888888 4777777654 78999999999998 78888
Q ss_pred CCCCccccccceeecCCcchHHhhcCCCCCCCCcccCcCeEEECCeEeec
Q 003013 804 SKEGLPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDRWLFD 853 (857)
Q Consensus 804 p~~~l~~~L~~L~i~~c~~l~~~~~~~~g~~w~~i~~i~~~~~~~~~~~~ 853 (857)
|...++++|+.|+++++... +.....+..+..+.+.++.+.+
T Consensus 520 ~~~~~~~~L~~L~Ls~N~l~--------~~~~~~~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 520 SHNDLPANLEILDISRNQLL--------APNPDVFVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCCCCCSCCCEEEEEEECCC--------CCCSCCCSSCCEEEEEEECCCC
T ss_pred ChhhhhccccEEECCCCcCC--------CCChhHhCCcCEEEecCCCccc
Confidence 88777789999999887422 1122234466777777666554
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=5.4e-26 Score=265.23 Aligned_cols=159 Identities=16% Similarity=0.232 Sum_probs=94.7
Q ss_pred eehhhhhhcCCCCCeEeccCCCCccc------------------ccccccccCCCC--CCCCCceEEEccCCCCCCcchh
Q 003013 346 VLAGLFEQDIISLNRLQIKGCPRLLS------------------LVTEEEHDHQQP--ELPCRLRFLELSYCQGLTKLPQ 405 (857)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~~~~l~~------------------l~~~~~~~~~i~--~l~~~L~~L~L~~~~~l~~lp~ 405 (857)
.+|.. +..+++|+.|+++++. +.. +|.. ++ .+ ++|++|+|++|.....+|.
T Consensus 439 ~IP~~-l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~------l~f~~L-~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 439 FISKA-IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE------LSWSNL-KDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp EECGG-GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC------CCGGGC-TTCCEEEEESCTTCCSCCG
T ss_pred chhHH-HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh------hhhccC-CCCCEEECcCCCCCccChH
Confidence 35544 3667777777777654 333 3332 33 55 6677777777666666676
Q ss_pred hhCCCCCCcEEeEcCCCCCCc--CCC-C-------CCCCCcceeeccccccccccch--hhhcCCCCCccEEEEecCCCC
Q 003013 406 ALLTLCSLTDMKILGCASLVS--FPE-V-------ALPSQLRTVRIQECNALKSLPE--AWMYNSNSSLESLKIRSCNSL 473 (857)
Q Consensus 406 ~~~~l~~L~~L~l~~~~~l~~--~~~-~-------~~l~~L~~L~l~~~~~l~~l~~--~~~~~~l~~L~~L~l~~~~~~ 473 (857)
.+..+++|++|++++|..+.. +|. + ..+++|++|++++|. +..+|. .+.. +++|++|++++|. +
T Consensus 510 ~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~--L~~L~~L~Ls~N~-l 585 (876)
T 4ecn_A 510 FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQK--MVKLGLLDCVHNK-V 585 (876)
T ss_dssp GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTT--CTTCCEEECTTSC-C
T ss_pred HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhc--CCCCCEEECCCCC-c
Confidence 677777777777776642332 331 2 234467777777665 556666 5544 6777777776654 3
Q ss_pred CCCCCCCCCCCccEEeccccccccccChhhhccCCCC-ccEEEecCCC
Q 003013 474 VSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSS-LESLEIRSCD 520 (857)
Q Consensus 474 ~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~-L~~L~l~~c~ 520 (857)
..+|.+..+++|+.|+++++. +..+|..+.. +++ |+.|+++++.
T Consensus 586 ~~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~--l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 586 RHLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCA--FTDQVEGLGFSHNK 630 (876)
T ss_dssp CBCCCCCTTSEESEEECCSSC-CSCCCTTSCE--ECTTCCEEECCSSC
T ss_pred ccchhhcCCCcceEEECcCCc-cccchHHHhh--ccccCCEEECcCCC
Confidence 366656666677777776643 3466655443 455 6777666643
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=3e-26 Score=263.82 Aligned_cols=359 Identities=16% Similarity=0.213 Sum_probs=219.4
Q ss_pred cceeehhhhhhcCCCCCeEeccCCCCccc------------------ccccccccCCCC--CCCCCceEEEccCCCCCCc
Q 003013 343 NEVVLAGLFEQDIISLNRLQIKGCPRLLS------------------LVTEEEHDHQQP--ELPCRLRFLELSYCQGLTK 402 (857)
Q Consensus 343 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~------------------l~~~~~~~~~i~--~l~~~L~~L~L~~~~~l~~ 402 (857)
.+..+|.. +..+++|++|+++++. +.. +|.. ++ .+ ++|++|++++|.....
T Consensus 194 ~l~~ip~~-l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~------l~~~~l-~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 194 NITFVSKA-VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED------LKWDNL-KDLTDVEVYNCPNLTK 264 (636)
T ss_dssp EEEEECGG-GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC------CCGGGC-TTCCEEEEECCTTCSS
T ss_pred CCccCCHH-HhcccCCCEEECcCCc-cccccccccccccccchhcccCchh------hhhccc-CCCCEEEecCCcCCcc
Confidence 34445554 4667777777777754 444 4433 44 55 6777777777766667
Q ss_pred chhhhCCCCCCcEEeEcCCCCCC--cCCC-CCC------CCCcceeeccccccccccch--hhhcCCCCCccEEEEecCC
Q 003013 403 LPQALLTLCSLTDMKILGCASLV--SFPE-VAL------PSQLRTVRIQECNALKSLPE--AWMYNSNSSLESLKIRSCN 471 (857)
Q Consensus 403 lp~~~~~l~~L~~L~l~~~~~l~--~~~~-~~~------l~~L~~L~l~~~~~l~~l~~--~~~~~~l~~L~~L~l~~~~ 471 (857)
+|..++.+++|++|++++|..+. .+|. ++. +++|++|++++|. ++.+|. .+.. +++|++|++++|.
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~--l~~L~~L~L~~N~ 341 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQK--MKKLGMLECLYNQ 341 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTT--CTTCCEEECCSCC
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhcc--CCCCCEEeCcCCc
Confidence 77777777777777777765243 2442 333 3677777777765 556776 5554 7777777777654
Q ss_pred CCCCCCCCCCCCCccEEeccccccccccChhhhccCCCC-ccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcc
Q 003013 472 SLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSS-LESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMA 550 (857)
Q Consensus 472 ~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~ 550 (857)
....+|.+..+++|+.|+++++ .+..+|..+.. +++ |+.|+++++. ++.++......
T Consensus 342 l~g~ip~~~~l~~L~~L~L~~N-~l~~lp~~l~~--l~~~L~~L~Ls~N~-l~~lp~~~~~~------------------ 399 (636)
T 4eco_A 342 LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCG--FTEQVENLSFAHNK-LKYIPNIFDAK------------------ 399 (636)
T ss_dssp CEEECCCCEEEEEESEEECCSS-EEEECCTTSEE--ECTTCCEEECCSSC-CSSCCSCCCTT------------------
T ss_pred CccchhhhCCCCCCCEEECCCC-ccccccHhhhh--hcccCcEEEccCCc-Ccccchhhhhc------------------
Confidence 3325665566677777777774 34466666544 466 7777777643 33332211000
Q ss_pred cccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccC
Q 003013 551 EQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYE 630 (857)
Q Consensus 551 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~ 630 (857)
.+++|+.|+++++.-....+.. ++. .-...+...+|+.|++++
T Consensus 400 ----------------------~l~~L~~L~Ls~N~l~~~~p~~--l~~-------------~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 400 ----------------------SVSVMSAIDFSYNEIGSVDGKN--FDP-------------LDPTPFKGINVSSINLSN 442 (636)
T ss_dssp ----------------------CSSCEEEEECCSSCTTTTTTCS--SCT-------------TCSSCCCCCCEEEEECCS
T ss_pred ----------------------ccCccCEEECcCCcCCCcchhh--hcc-------------cccccccCCCCCEEECcC
Confidence 0124445554444211100000 000 000001123455555555
Q ss_pred cCCccccCcCC-CCCCCCCeEEeecCCCCcccCCCCCCC--------CCcceEeeccccCcccCcccCC--CCCCccEEe
Q 003013 631 LENLKSLPAGL-HNLHHLQKISIADCPNLESFPEEGLPS--------TKLTELSIRECENLKALPNCMH--NLTSLLNLE 699 (857)
Q Consensus 631 ~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~--------~~L~~L~l~~c~~l~~l~~~~~--~l~~L~~L~ 699 (857)
..+..+|..+ ..+++|++|++++| .+..+|...... ++|++|++++|. ++.+|..+. .+++|++|+
T Consensus 443 -N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 443 -NQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGID 519 (636)
T ss_dssp -SCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEE
T ss_pred -CccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEE
Confidence 3445666543 45889999999987 455777655432 289999999865 668888776 899999999
Q ss_pred ecCCCCCcccCCC-CCCCCCCeEEecCC------CCcccccccccCCCCCccEeEEcCCCCCCCCCCC-CCCCCCeEecC
Q 003013 700 IRRCPSVVSFPED-GFPTNLKSLKVHDL------KISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP-FPASLTELWIS 771 (857)
Q Consensus 700 l~~c~~l~~l~~~-~~~~~L~~L~l~~~------~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~ 771 (857)
+++|. +..+|.. ..+++|+.|++++| .....++ ..+..+++|++|++++ +.+..+|. ..++|+.|+++
T Consensus 520 Ls~N~-l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p-~~l~~l~~L~~L~Ls~--N~l~~ip~~~~~~L~~L~Ls 595 (636)
T 4eco_A 520 LSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP-EGITLCPSLTQLQIGS--NDIRKVNEKITPNISVLDIK 595 (636)
T ss_dssp CCSSC-CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC-TTGGGCSSCCEEECCS--SCCCBCCSCCCTTCCEEECC
T ss_pred CCCCC-CCCcChhhhcCCCCCEEECCCCcccccCcccccCh-HHHhcCCCCCEEECCC--CcCCccCHhHhCcCCEEECc
Confidence 99984 5557655 55789999999654 3333443 3677899999999998 35577776 56899999999
Q ss_pred CCCCCcccC
Q 003013 772 FMPDLECLS 780 (857)
Q Consensus 772 ~~~~l~~l~ 780 (857)
++ .+..+.
T Consensus 596 ~N-~l~~~~ 603 (636)
T 4eco_A 596 DN-PNISID 603 (636)
T ss_dssp SC-TTCEEE
T ss_pred CC-CCcccc
Confidence 95 454443
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.4e-25 Score=258.53 Aligned_cols=340 Identities=14% Similarity=0.135 Sum_probs=194.9
Q ss_pred CcchhhhCCCCCCcEEeEcCCCCCC-----------------cCCC-CC--CCCCcceeeccccccccccchhhhcCCCC
Q 003013 401 TKLPQALLTLCSLTDMKILGCASLV-----------------SFPE-VA--LPSQLRTVRIQECNALKSLPEAWMYNSNS 460 (857)
Q Consensus 401 ~~lp~~~~~l~~L~~L~l~~~~~l~-----------------~~~~-~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~l~ 460 (857)
..+|..++.+++|++|+|++|.... .+|. ++ .+++|++|++++|.....+|..+.. ++
T Consensus 438 ~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~--L~ 515 (876)
T 4ecn_A 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD--LP 515 (876)
T ss_dssp EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG--CS
T ss_pred cchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC--CC
Confidence 3488888888888888888875333 1663 55 7888888888888777778877776 88
Q ss_pred CccEEEEecCCCCCC--CCC--------CCCCCCccEEeccccccccccCh--hhhccCCCCccEEEecCCCCCcccccc
Q 003013 461 SLESLKIRSCNSLVS--FPE--------IALPSQLRTVRIQECNALKSLPE--AWMHNSNSSLESLEIRSCDSLTYIARI 528 (857)
Q Consensus 461 ~L~~L~l~~~~~~~~--~~~--------~~~~~~L~~L~l~~~~~l~~lp~--~~~~~~l~~L~~L~l~~c~~l~~l~~~ 528 (857)
+|++|++++|..+.. +|. ...+++|+.|+++++. +..+|. .+.. +++|+.|+++++. ++.++.+
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~--L~~L~~L~Ls~N~-l~~lp~~ 591 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQK--MVKLGLLDCVHNK-VRHLEAF 591 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTT--CTTCCEEECTTSC-CCBCCCC
T ss_pred CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhc--CCCCCEEECCCCC-cccchhh
Confidence 888888888753442 442 2345688888888854 457877 5544 6888888888854 3355544
Q ss_pred cCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCC-ccEEEEeCCCCccccccCCCchhhHHHHHhh
Q 003013 529 QLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPAT-LEHLEVSSCSNLAFLSRNGNLPRALKYLVSL 607 (857)
Q Consensus 529 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~ 607 (857)
...++|+.|.++++. +. .+|.....+++ |+.|+++++.
T Consensus 592 ~~L~~L~~L~Ls~N~-l~-------------------~lp~~l~~l~~~L~~L~Ls~N~--------------------- 630 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQ-IE-------------------EIPEDFCAFTDQVEGLGFSHNK--------------------- 630 (876)
T ss_dssp CTTSEESEEECCSSC-CS-------------------CCCTTSCEECTTCCEEECCSSC---------------------
T ss_pred cCCCcceEEECcCCc-cc-------------------cchHHHhhccccCCEEECcCCC---------------------
Confidence 455666666665532 11 11211112234 6666666652
Q ss_pred cCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCC--CCCeEEeecCCCCcccCC---CCC--CCCCcceEeecccc
Q 003013 608 CSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLH--HLQKISIADCPNLESFPE---EGL--PSTKLTELSIRECE 680 (857)
Q Consensus 608 ~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~--~L~~L~l~~c~~l~~l~~---~~~--~~~~L~~L~l~~c~ 680 (857)
+..+|..+..++ +|+.|++++|.....+|. ... ..++|+.|++++|.
T Consensus 631 --------------------------L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 631 --------------------------LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp --------------------------CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred --------------------------CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 223443333332 366666665543222221 111 23356666666543
Q ss_pred CcccCcccC-CCCCCccEEeecCCCCCcccCCCCCC---------CCCCeEEecCCCCcccccccccC--CCCCccEeEE
Q 003013 681 NLKALPNCM-HNLTSLLNLEIRRCPSVVSFPEDGFP---------TNLKSLKVHDLKISKALLEWGSN--RFTSLRKLEI 748 (857)
Q Consensus 681 ~l~~l~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~---------~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l 748 (857)
+..+|..+ ..+++|+.|++++| .+..+|...+. ++|+.|++++|... .++. .+. .+++|+.|++
T Consensus 685 -L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~-~l~~~~l~~L~~L~L 760 (876)
T 4ecn_A 685 -IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD-DFRATTLPYLSNMDV 760 (876)
T ss_dssp -CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG-GGSTTTCTTCCEEEC
T ss_pred -CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCc-cchH-HhhhccCCCcCEEEe
Confidence 33555433 25566666666665 34455443110 15666666666443 3332 232 5666666666
Q ss_pred cCCCCCCCCCCC---CCCCCCeEecCC------CCCCcccCCCCCCccccCceeccCCCCCCCCCCCCccccccceeecC
Q 003013 749 WGPCPDLVSPPP---FPASLTELWISF------MPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINH 819 (857)
Q Consensus 749 ~~~~~~l~~~~~---~~~~L~~L~l~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~ 819 (857)
++ +.+..+|. .+++|+.|++++ +.-...+|.....+++|+.|++++| .+..+|.. +.++|+.|++++
T Consensus 761 s~--N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~~~L~~LdLs~ 836 (876)
T 4ecn_A 761 SY--NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LTPQLYILDIAD 836 (876)
T ss_dssp CS--SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CCSSSCEEECCS
T ss_pred CC--CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hcCCCCEEECCC
Confidence 65 23444443 345666666654 2223445544566677777777766 34666664 335677777776
Q ss_pred Cc
Q 003013 820 CP 821 (857)
Q Consensus 820 c~ 821 (857)
||
T Consensus 837 N~ 838 (876)
T 4ecn_A 837 NP 838 (876)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=9.1e-25 Score=250.55 Aligned_cols=464 Identities=17% Similarity=0.139 Sum_probs=210.9
Q ss_pred ccchhccccc--ch-hhhccCCCCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEecc
Q 003013 290 LDTLYITSCD--QL-LMTIQCLPALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIK 364 (857)
Q Consensus 290 L~~l~~~~c~--~l-~~~~~~l~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 364 (857)
++.+.+..+. ++ +.++..+++|+.|++++|..... ..+..+++|+.|++.++. +..++...+..+++|++|+++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCcccccccccc
Confidence 4444444442 22 23456666666666666643322 235556666666666543 444554555666666666666
Q ss_pred CCCCcccccccccccCCCCCCCCCceEEEccCCCCCC-cchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCc----c
Q 003013 365 GCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLT-KLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQL----R 437 (857)
Q Consensus 365 ~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L----~ 437 (857)
++. +..++.. .++.+ ++|++|++++|.... .+|..+..+++|++|++++|. +..++ .++.+.+| +
T Consensus 109 ~n~-l~~l~~~-----~~~~l-~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 109 ETN-LASLENF-----PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TSC-CCCSTTC-----SCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCC
T ss_pred ccc-cccCCCc-----ccccc-ccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhh
Confidence 642 4433321 14445 666666666654322 356666666666666666653 33332 23344455 5
Q ss_pred eeeccccccccccchhhhcCCCCCccEEEEecCCCCCC-CC-CCCCCCCccEEeccc-----cccccccChhhhccCC--
Q 003013 438 TVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVS-FP-EIALPSQLRTVRIQE-----CNALKSLPEAWMHNSN-- 508 (857)
Q Consensus 438 ~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~~L~l~~-----~~~l~~lp~~~~~~~l-- 508 (857)
+|+++++. +..++..... ..+|++|+++++..... ++ .+..+++++.+.+.. ...+..++...... +
T Consensus 181 ~L~l~~n~-l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~-l~~ 256 (570)
T 2z63_A 181 SLDLSLNP-MNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-LCN 256 (570)
T ss_dssp EEECTTCC-CCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG-GGG
T ss_pred hcccCCCC-ceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc-ccc
Confidence 66666655 4444444332 33566666665421100 00 011122222211110 00011111110000 0
Q ss_pred CCccEEEecCCCCCccc--ccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCC
Q 003013 509 SSLESLEIRSCDSLTYI--ARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCS 586 (857)
Q Consensus 509 ~~L~~L~l~~c~~l~~l--~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~ 586 (857)
-.++.+++.++..+... ..+...++++.|.+.++. +. .+|...... +|++|++.+|.
T Consensus 257 l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~-------------------~l~~~~~~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IE-------------------RVKDFSYNF-GWQHLELVNCK 315 (570)
T ss_dssp SEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-EC-------------------SCCBCCSCC-CCSEEEEESCB
T ss_pred cchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-ch-------------------hhhhhhccC-CccEEeeccCc
Confidence 01233333332111110 011122444444444331 11 111111112 45555555542
Q ss_pred CccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCccc---CC
Q 003013 587 NLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESF---PE 663 (857)
Q Consensus 587 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l---~~ 663 (857)
- ..++. ....+|+.+.+.++......+. ..+++|++|++++|. +..+ +.
T Consensus 316 ~-~~l~~------------------------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~ 367 (570)
T 2z63_A 316 F-GQFPT------------------------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCSQ 367 (570)
T ss_dssp C-SSCCB------------------------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEEH
T ss_pred c-cccCc------------------------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCccccccc
Confidence 1 11110 1123444444444332222222 445666666666653 2222 22
Q ss_pred CCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCC---CCCCCCCCeEEecCCCCcccccccccCCC
Q 003013 664 EGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPE---DGFPTNLKSLKVHDLKISKALLEWGSNRF 740 (857)
Q Consensus 664 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 740 (857)
.+..+++|++|++++|. +..++..+..+++|++|++++|. +...+. ...+++|+.|++++|...... +..+..+
T Consensus 368 ~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l 444 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGL 444 (570)
T ss_dssp HHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSCCEECC-TTTTTTC
T ss_pred cccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCcccccc-hhhhhcC
Confidence 33345566666666644 33444445566666666666653 222211 133456666666666543322 2245556
Q ss_pred CCccEeEEcCCCCCC-CCCCC---CCCCCCeEecCCCCCCccc-CCCCCCccccCceeccCCCCCCCCCCCCc--ccccc
Q 003013 741 TSLRKLEIWGPCPDL-VSPPP---FPASLTELWISFMPDLECL-SSIGENLTSLKTLRLSYCRKLTYFSKEGL--PKSLL 813 (857)
Q Consensus 741 ~~L~~L~l~~~~~~l-~~~~~---~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ip~~~l--~~~L~ 813 (857)
++|++|++++ |.-. ..+|. .+++|++|++++| .++.+ |.....+++|+.|++++| .+..+|...+ .++|+
T Consensus 445 ~~L~~L~l~~-n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 445 SSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred CcCcEEECcC-CcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCc
Confidence 6666666665 2211 12222 4566666666664 44444 434466677777777766 5555554322 25667
Q ss_pred ceeecCCc
Q 003013 814 RLYINHCP 821 (857)
Q Consensus 814 ~L~i~~c~ 821 (857)
.|++++||
T Consensus 522 ~L~l~~N~ 529 (570)
T 2z63_A 522 KIWLHTNP 529 (570)
T ss_dssp EEECCSSC
T ss_pred EEEecCCc
Confidence 77776654
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=9.2e-25 Score=249.05 Aligned_cols=453 Identities=17% Similarity=0.180 Sum_probs=310.6
Q ss_pred cccchhccccc--ch-hhhccCCCCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEec
Q 003013 289 LLDTLYITSCD--QL-LMTIQCLPALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQI 363 (857)
Q Consensus 289 ~L~~l~~~~c~--~l-~~~~~~l~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l 363 (857)
.++.+.+..+. ++ |.++..+++|+.|+++++..... ..+..+++|+.|+++++ .+..++...+..+++|++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEEC
Confidence 34444444442 22 45678888999999998875443 35778889999999885 455667676788999999999
Q ss_pred cCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcch-hhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeec
Q 003013 364 KGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLP-QALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRI 441 (857)
Q Consensus 364 ~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l 441 (857)
+++. +..+.. ...++.+ ++|++|++++|..+..+| ..+..+++|++|++++|......| .++.+++|++|++
T Consensus 106 s~n~-l~~~~~----~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 179 (549)
T 2z81_A 106 MGNP-YQTLGV----TSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179 (549)
T ss_dssp TTCC-CSSSCS----SCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred CCCc-ccccch----hhhhhcc-CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence 9864 433211 1135666 889999999987667776 578889999999999885444444 4677889999999
Q ss_pred cccccccccchhhhcCCCCCccEEEEecCCCCCCC-----CCCCCCCCccEEeccccccccccChhhhc--cCCCCccEE
Q 003013 442 QECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSF-----PEIALPSQLRTVRIQECNALKSLPEAWMH--NSNSSLESL 514 (857)
Q Consensus 442 ~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~l~~lp~~~~~--~~l~~L~~L 514 (857)
+++. +..+|..+. ..+++|++|++++|.. ..+ +....+++|+.|+++++......+..+.. ..+++|+.+
T Consensus 180 ~~n~-~~~~~~~~~-~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 180 HLSE-SAFLLEIFA-DILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp ECSB-STTHHHHHH-HSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred ccCc-ccccchhhH-hhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 9876 566665542 2388999999998653 332 22355788999999886433222222211 236789999
Q ss_pred EecCCCCCc--cc-----ccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCC
Q 003013 515 EIRSCDSLT--YI-----ARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSN 587 (857)
Q Consensus 515 ~l~~c~~l~--~l-----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 587 (857)
++.+|.... .+ ......++++.|.+.++.--. ... .. .++......++|+.|+++++.
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~----------~~---~l~~~~~~~~~L~~L~l~~n~- 321 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ-FYL----------FY---DLSTVYSLLEKVKRITVENSK- 321 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSC-GGG----------SC---CCCHHHHHSTTCCEEEEESSC-
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccch-hhh----------cc---cchhhhhhcccceEEEeccCc-
Confidence 998875221 11 112334566677665542110 000 00 000000123589999999873
Q ss_pred ccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCcccc---CcCCCCCCCCCeEEeecCCCCcccCC-
Q 003013 588 LAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSL---PAGLHNLHHLQKISIADCPNLESFPE- 663 (857)
Q Consensus 588 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l---~~~~~~l~~L~~L~l~~c~~l~~l~~- 663 (857)
+.. +|... .. ...+|+.|+++++.-...+ +..++.+++|++|++++| .+..++.
T Consensus 322 l~~------ip~~~---~~------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~ 379 (549)
T 2z81_A 322 VFL------VPCSF---SQ------------HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKT 379 (549)
T ss_dssp CCC------CCHHH---HH------------HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHH
T ss_pred ccc------CCHHH---Hh------------cCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccc
Confidence 322 22111 00 1357888888885544434 234678999999999998 4555542
Q ss_pred --CCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCC
Q 003013 664 --EGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFT 741 (857)
Q Consensus 664 --~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 741 (857)
.+..+++|++|++++| .++.+|..+..+++|++|++++|. +..++.. .+++|+.|++++|..... ...++
T Consensus 380 ~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~-~~~~L~~L~Ls~N~l~~~-----~~~l~ 451 (549)
T 2z81_A 380 GEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC-IPQTLEVLDVSNNNLDSF-----SLFLP 451 (549)
T ss_dssp HHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT-SCTTCSEEECCSSCCSCC-----CCCCT
T ss_pred hhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccch-hcCCceEEECCCCChhhh-----cccCC
Confidence 3566889999999997 477899989999999999999994 6666653 458999999999976432 35789
Q ss_pred CccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCC
Q 003013 742 SLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRK 799 (857)
Q Consensus 742 ~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~ 799 (857)
+|++|++++ +.+..+|. .+++|+.|++++ ++++.++... ..+++|+.|++++|+-
T Consensus 452 ~L~~L~Ls~--N~l~~ip~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 452 RLQELYISR--NKLKTLPDASLFPVLLVMKISR-NQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TCCEEECCS--SCCSSCCCGGGCTTCCEEECCS-SCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred hhcEEECCC--CccCcCCCcccCccCCEEecCC-CccCCcCHHHHhcCcccCEEEecCCCc
Confidence 999999998 36778876 578999999999 5788877654 8899999999999974
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=3.4e-25 Score=250.57 Aligned_cols=171 Identities=12% Similarity=0.093 Sum_probs=133.0
Q ss_pred CCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCccc---CCC-CCCCCCCe
Q 003013 645 HHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSF---PED-GFPTNLKS 720 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l---~~~-~~~~~L~~ 720 (857)
++|+.|++++|. +..++. ...+++|++|++++|.....+|..+..+++|++|++++|. +..+ |.. ..+++|+.
T Consensus 302 ~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 302 MNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp CCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCE
T ss_pred CceeEEEcCCCc-cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCE
Confidence 467888888774 332221 1467899999999987666688889999999999999994 4533 222 45799999
Q ss_pred EEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC-CCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC
Q 003013 721 LKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP-FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 721 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 799 (857)
|++++|.....++...+..+++|++|++++ +.-...+|. .+++|+.|++++ ++++.+|.....+++|+.|++++| .
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~ 455 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSS-NILTDTIFRCLPPRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-Q 455 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCS-SCCCGGGGGSCCTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-C
T ss_pred EECCCCcCCcccccchhccCccCCEEECcC-CCCCcchhhhhcccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-c
Confidence 999999886657666688899999999998 432233444 347999999999 488899977789999999999999 7
Q ss_pred CCCCCCCCc--cccccceeecCCc
Q 003013 800 LTYFSKEGL--PKSLLRLYINHCP 821 (857)
Q Consensus 800 l~~ip~~~l--~~~L~~L~i~~c~ 821 (857)
++.+|...+ .++|+.|+++++|
T Consensus 456 l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 456 LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHhccCCcccEEECcCCC
Confidence 888987533 3689999999986
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=247.39 Aligned_cols=475 Identities=13% Similarity=0.087 Sum_probs=265.7
Q ss_pred CccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCC
Q 003013 310 ALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPC 387 (857)
Q Consensus 310 ~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~ 387 (857)
.++.|+++++..... .++..+++|+.|+++++ .+..++.+.+..+++|++|+++++. +..++.. .+..+ +
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~~~l-~ 100 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALG-----AFSGL-S 100 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTT-----TTTTC-T
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccCHh-----hhcCc-c
Confidence 566666666653322 24555566666666554 2444444445556666666665543 3333221 23444 5
Q ss_pred CceEEEccCCCCCCcchh-hhCCCCCCcEEeEcCCCCCC-cCC-CCCCCCCcceeeccccccccccc-hhhhcCCCCCc-
Q 003013 388 RLRFLELSYCQGLTKLPQ-ALLTLCSLTDMKILGCASLV-SFP-EVALPSQLRTVRIQECNALKSLP-EAWMYNSNSSL- 462 (857)
Q Consensus 388 ~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~-~~~-~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~l~~L- 462 (857)
+|++|++++|. +..++. .++.+++|++|++++|.... .+| .++.+++|++|+++++. +..++ ..+.. +.+|
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~--l~~L~ 176 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV--LHQMP 176 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHH--HHTCT
T ss_pred ccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccc--hhccc
Confidence 56666666543 333332 35556666666666553222 123 24445566666665554 33332 22222 3444
Q ss_pred ---cEEEEecCCCCCCCCCCCCCCCccEEecccccc-ccccChhhhccCCCCccEEEec--CCCCCcccccc--cCCC--
Q 003013 463 ---ESLKIRSCNSLVSFPEIALPSQLRTVRIQECNA-LKSLPEAWMHNSNSSLESLEIR--SCDSLTYIARI--QLPP-- 532 (857)
Q Consensus 463 ---~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~lp~~~~~~~l~~L~~L~l~--~c~~l~~l~~~--~~~~-- 532 (857)
++|+++++......+......+|+.|+++++.. ...++..+.. +++++.+.+. .......+... ..+.
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~--l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG--LAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHT--TTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcC--ccccceeeeccccccCchhhhhcchhhhccc
Confidence 455555543222222222222455555554321 1112222211 3334333222 11111100000 0011
Q ss_pred ---cccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcC
Q 003013 533 ---SLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCS 609 (857)
Q Consensus 533 ---~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 609 (857)
.++.+.+.++..+.. ..+.....+++|+.|++.++. ++
T Consensus 255 ~~l~l~~l~l~~~~~~~~------------------~~~~~~~~l~~L~~L~l~~~~-l~-------------------- 295 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLD------------------DIIDLFNCLTNVSSFSLVSVT-IE-------------------- 295 (570)
T ss_dssp GGSEEEEEEEEETTEEES------------------CSTTTTGGGTTCSEEEEESCE-EC--------------------
T ss_pred cccchhhhhhhcchhhhh------------------hchhhhcCcCcccEEEecCcc-ch--------------------
Confidence 112222222111110 111111123678888888762 11
Q ss_pred chhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccC---c
Q 003013 610 KLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKAL---P 686 (857)
Q Consensus 610 ~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l---~ 686 (857)
.++..+....|+.+++.++ .+..+|. ..+++|+.|++++|.....++. ..+++|++|++++|. +... +
T Consensus 296 ---~l~~~~~~~~L~~L~l~~n-~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~-l~~~~~~~ 366 (570)
T 2z63_A 296 ---RVKDFSYNFGWQHLELVNC-KFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG-LSFKGCCS 366 (570)
T ss_dssp ---SCCBCCSCCCCSEEEEESC-BCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC-CBEEEEEE
T ss_pred ---hhhhhhccCCccEEeeccC-cccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc-cCcccccc
Confidence 2222233337888888875 4557765 4689999999999865554443 667899999999876 4433 5
Q ss_pred ccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CC
Q 003013 687 NCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FP 762 (857)
Q Consensus 687 ~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~ 762 (857)
..+..+++|++|++++|. +..++.. ..+++|+.|++++|......+...+..+++|++|++++ |.-....+. .+
T Consensus 367 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l 444 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGL 444 (570)
T ss_dssp HHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTT-SCCEECCTTTTTTC
T ss_pred ccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcC-CcccccchhhhhcC
Confidence 567889999999999984 4555443 45689999999999865554445678999999999998 443233332 57
Q ss_pred CCCCeEecCCCCCC-cccCCCCCCccccCceeccCCCCCCCC-CCC-CccccccceeecCCcchHHhhcCCCCCCCCccc
Q 003013 763 ASLTELWISFMPDL-ECLSSIGENLTSLKTLRLSYCRKLTYF-SKE-GLPKSLLRLYINHCPLIEERCRKDEGKYWPMIS 839 (857)
Q Consensus 763 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~i-p~~-~l~~~L~~L~i~~c~~l~~~~~~~~g~~w~~i~ 839 (857)
++|++|++++|.-. ..+|.....+++|+.|++++| .+..+ |.. .-.++|+.|++++|. ++. ...+.+....
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~----~~~~~~~~l~ 518 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ-LKS----VPDGIFDRLT 518 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCT
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCc-CCC----CCHHHhhccc
Confidence 89999999996533 257867789999999999999 56655 432 223799999999984 221 1233456667
Q ss_pred CcCeEEECCeEeecc
Q 003013 840 HIPCVEINDRWLFDK 854 (857)
Q Consensus 840 ~i~~~~~~~~~~~~~ 854 (857)
++..+.+.++.+...
T Consensus 519 ~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 519 SLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCCEEECCSSCBCCC
T ss_pred CCcEEEecCCcccCC
Confidence 788888887766543
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.92 E-value=8.3e-23 Score=243.59 Aligned_cols=459 Identities=14% Similarity=0.092 Sum_probs=250.6
Q ss_pred CCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCC
Q 003013 330 LSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLT 409 (857)
Q Consensus 330 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~ 409 (857)
.++++.|+++++. +..+....+..+++|++|+++++.....++.. .+..+ ++|++|+|++|......|..+..
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-----~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-----AFRNL-PNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTT-----TTSSC-TTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHH-----HhcCC-CCCCEEECCCCcCcccCHhHccC
Confidence 3567888887743 44555555678888888888887554444222 35666 78888888887654455778888
Q ss_pred CCCCcEEeEcCCCCCCcCCC---CCCCCCcceeeccccccccccc--hhhhcCCCCCccEEEEecCCCCCCCC-CCCCC-
Q 003013 410 LCSLTDMKILGCASLVSFPE---VALPSQLRTVRIQECNALKSLP--EAWMYNSNSSLESLKIRSCNSLVSFP-EIALP- 482 (857)
Q Consensus 410 l~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~l~~l~--~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~- 482 (857)
+++|++|++++|.....++. ++.+++|++|++++|. +..++ ..+.. +++|++|++++|......+ .+..+
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~--L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGK--LNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGT--CSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhh--CCCCCEEECCCCcCCeeCHHHccccc
Confidence 88888888888754443432 6678888888888876 55443 33444 8888888888764333222 22233
Q ss_pred -CCccEEeccccccccccChhhhcc----CCCCccEEEecCCCCCcccc----cccCCCcccEEeeccCCCchhhccccc
Q 003013 483 -SQLRTVRIQECNALKSLPEAWMHN----SNSSLESLEIRSCDSLTYIA----RIQLPPSLKRLIVSDCCNLRTLMAEQD 553 (857)
Q Consensus 483 -~~L~~L~l~~~~~l~~lp~~~~~~----~l~~L~~L~l~~c~~l~~l~----~~~~~~~L~~L~l~~~~~l~~~~~~~~ 553 (857)
++|+.|+++++......|..+... ...+|+.|+++++......+ .......+..+.+.....-...
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----- 247 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----- 247 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS-----
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc-----
Confidence 678888888765444444332210 01237888887753221111 1111133444444311000000
Q ss_pred ccccCCCCCCc--cccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCc
Q 003013 554 ICSSSRGCTSL--TSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYEL 631 (857)
Q Consensus 554 ~~~~~~~~~~l--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~ 631 (857)
........ ..|. ...+++|+.|+++++.- ..+... . -....+|+.|++.++
T Consensus 248 ---~~~~l~~~~~~~f~--~l~~~~L~~L~Ls~n~l-~~~~~~-~--------------------~~~l~~L~~L~L~~n 300 (844)
T 3j0a_A 248 ---GFHNIKDPDQNTFA--GLARSSVRHLDLSHGFV-FSLNSR-V--------------------FETLKDLKVLNLAYN 300 (844)
T ss_dssp ---SCSSSTTGGGTTTT--TTTTSCCCEEECTTCCC-CEECSC-C--------------------SSSCCCCCEEEEESC
T ss_pred ---cccccCCCChhhhh--ccccCCccEEECCCCcc-cccChh-h--------------------hhcCCCCCEEECCCC
Confidence 00000000 0111 00124677777766521 111000 0 001245666666663
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCCCCcccC
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
.--...+..+..+++|++|++++|..-...+..+..+++|++|+++++. +..++ ..+..+++|++|++++| .++.++
T Consensus 301 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~ 378 (844)
T 3j0a_A 301 KINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN-ALTTIH 378 (844)
T ss_dssp CCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETC-CSCCCS
T ss_pred cCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCC-CCCccc
Confidence 3222234456667777777777664323334455566677777777654 44443 34566777777777766 344443
Q ss_pred CCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC-----CCCCCCeEecCCCCCCcccCCC--C
Q 003013 711 EDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP-----FPASLTELWISFMPDLECLSSI--G 783 (857)
Q Consensus 711 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~-----~~~~L~~L~l~~~~~l~~l~~~--~ 783 (857)
. +++|+.|++++|... .++. ...+++.|++++ +.+..++. .+++|+.|++++ ++++.++.. .
T Consensus 379 ~---~~~L~~L~l~~N~l~-~l~~----~~~~l~~L~ls~--N~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~ 447 (844)
T 3j0a_A 379 F---IPSIPDIFLSGNKLV-TLPK----INLTANLIHLSE--NRLENLDILYFLLRVPHLQILILNQ-NRFSSCSGDQTP 447 (844)
T ss_dssp S---CCSCSEEEEESCCCC-CCCC----CCTTCCEEECCS--CCCCSSTTHHHHTTCTTCCEEEEES-CCCCCCCSSSSS
T ss_pred C---CCCcchhccCCCCcc-cccc----cccccceeeccc--CccccCchhhhhhcCCccceeeCCC-Cccccccccccc
Confidence 3 566777777776543 2221 245667777765 34444433 467788888887 456554433 2
Q ss_pred CCccccCceeccCCCCCCCCCCCC-------ccccccceeecCCcchHHhhcCCCCCCCCcccCcCeEEECCe
Q 003013 784 ENLTSLKTLRLSYCRKLTYFSKEG-------LPKSLLRLYINHCPLIEERCRKDEGKYWPMISHIPCVEINDR 849 (857)
Q Consensus 784 ~~l~~L~~L~l~~c~~l~~ip~~~-------l~~~L~~L~i~~c~~l~~~~~~~~g~~w~~i~~i~~~~~~~~ 849 (857)
..+++|+.|++++| .+..++..+ -.++|+.|++++|. ++. .....+....++..+.+.++
T Consensus 448 ~~~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 448 SENPSLEQLFLGEN-MLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNS----LPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp CSCTTCCBCEEESC-CCSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTT----CCTTSSSSCCSCSEEEEESC
T ss_pred ccCCccccccCCCC-ccccccccccchhhhcCcccccEEECCCCc-ccc----cChhHccchhhhheeECCCC
Confidence 55788888888887 444333211 12578888888773 221 12333455556666665544
No 20
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.6e-23 Score=230.03 Aligned_cols=201 Identities=22% Similarity=0.263 Sum_probs=99.3
Q ss_pred CCccEEeecCccccccc-CCCCCCCceEEecCCcccceeehhhhhhcCC-------------CCCeEeccCCCCcccccc
Q 003013 309 PALSKLLIHGCKRVVFS-GPMDLSSLKSVDLVDIANEVVLAGLFEQDII-------------SLNRLQIKGCPRLLSLVT 374 (857)
Q Consensus 309 ~~l~~l~l~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~-------------~L~~L~l~~~~~l~~l~~ 374 (857)
..|+.+.++++.-..++ ++..+.+|+.|++.++.-...+|..+ ..+. .++.|+++++. ++.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~--- 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLG-LSS--- 85 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC---
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCc-ccc---
Confidence 45666666665543333 45666677777766543322333332 2222 24666666643 332
Q ss_pred cccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhh
Q 003013 375 EEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAW 454 (857)
Q Consensus 375 ~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 454 (857)
++.+|++|++|++++|. +..+|.. +++|++|++++| .+..++.. .++|++|++++|. ++.+|. +
T Consensus 86 -------lp~~~~~L~~L~l~~n~-l~~lp~~---~~~L~~L~l~~n-~l~~l~~~--~~~L~~L~L~~n~-l~~lp~-~ 149 (454)
T 1jl5_A 86 -------LPELPPHLESLVASCNS-LTELPEL---PQSLKSLLVDNN-NLKALSDL--PPLLEYLGVSNNQ-LEKLPE-L 149 (454)
T ss_dssp -------CCSCCTTCSEEECCSSC-CSSCCCC---CTTCCEEECCSS-CCSCCCSC--CTTCCEEECCSSC-CSSCCC-C
T ss_pred -------CCCCcCCCCEEEccCCc-CCccccc---cCCCcEEECCCC-ccCcccCC--CCCCCEEECcCCC-CCCCcc-c
Confidence 23344677777777654 3446642 367777777776 44444432 2577777777765 566663 3
Q ss_pred hcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcc
Q 003013 455 MYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSL 534 (857)
Q Consensus 455 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L 534 (857)
.. +++|++|++++| .+..+|.. ..+|++|+++++ .+..+| .+ ..+++|+.|+++++. ++.++ ..+++|
T Consensus 150 ~~--l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n-~l~~l~-~~--~~l~~L~~L~l~~N~-l~~l~--~~~~~L 217 (454)
T 1jl5_A 150 QN--SSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNN-QLEELP-EL--QNLPFLTAIYADNNS-LKKLP--DLPLSL 217 (454)
T ss_dssp TT--CTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSSCC-CC--TTCTTCCEEECCSSC-CSSCC--CCCTTC
T ss_pred CC--CCCCCEEECCCC-cCcccCCC--cccccEEECcCC-cCCcCc-cc--cCCCCCCEEECCCCc-CCcCC--CCcCcc
Confidence 33 777777777765 34445532 347777777774 445555 22 236777777777643 33222 123456
Q ss_pred cEEeeccC
Q 003013 535 KRLIVSDC 542 (857)
Q Consensus 535 ~~L~l~~~ 542 (857)
+.|+++++
T Consensus 218 ~~L~l~~n 225 (454)
T 1jl5_A 218 ESIVAGNN 225 (454)
T ss_dssp CEEECCSS
T ss_pred cEEECcCC
Confidence 66655554
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3e-23 Score=236.53 Aligned_cols=171 Identities=15% Similarity=0.097 Sum_probs=133.3
Q ss_pred CCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCC----CCCCCCCCe
Q 003013 645 HHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPE----DGFPTNLKS 720 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~~~L~~ 720 (857)
++|++|++++|.. ..++. ...+++|++|+++++.....+|..+..+++|++|++++| .++.++. ...+++|+.
T Consensus 331 ~~L~~L~l~~n~~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPF-IHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCCSEEEEESSCC-CCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCE
T ss_pred CcceEEEccCCCc-ccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCE
Confidence 4578888887743 22221 146789999999998766667888999999999999998 5665442 245689999
Q ss_pred EEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCC-CCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC
Q 003013 721 LKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFP-ASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 721 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 799 (857)
|++++|.....++...+..+++|++|++++ +.--..+|..+ ++|+.|++++ ++++.+|.....+++|+.|++++| .
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~~L~~L~L~~-N~l~~ip~~~~~l~~L~~L~L~~N-~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSS-NMLTGSVFRCLPPKVKVLDLHN-NRIMSIPKDVTHLQALQELNVASN-Q 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCS-SCCCGGGGSSCCTTCSEEECCS-SCCCCCCTTTTSSCCCSEEECCSS-C
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCC-CCCCcchhhhhcCcCCEEECCC-CcCcccChhhcCCCCCCEEECCCC-C
Confidence 999999876656666788899999999998 43223444433 7999999999 489999987789999999999999 7
Q ss_pred CCCCCCC--CccccccceeecCCc
Q 003013 800 LTYFSKE--GLPKSLLRLYINHCP 821 (857)
Q Consensus 800 l~~ip~~--~l~~~L~~L~i~~c~ 821 (857)
++.+|.. .-.++|+.|+++++|
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCHHHHhcCCCCCEEEecCCC
Confidence 8889875 223789999999876
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=5.5e-23 Score=232.44 Aligned_cols=430 Identities=14% Similarity=0.102 Sum_probs=283.0
Q ss_pred CCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCC
Q 003013 309 PALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELP 386 (857)
Q Consensus 309 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~ 386 (857)
++++.|+++++..... ..+..+++|+.|+++++. +..+....+..+++|++|+++++ .+..+|.. .+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--------~l- 89 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHN-KLVKISCH--------PT- 89 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--------CC-
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCC-ceeecCcc--------cc-
Confidence 6777888887764433 246677888888887753 44555555688889999999885 45555442 34
Q ss_pred CCceEEEccCCCCCC-cchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCc--ceeecccccc--ccccchhhhcCCCC-
Q 003013 387 CRLRFLELSYCQGLT-KLPQALLTLCSLTDMKILGCASLVSFPEVALPSQL--RTVRIQECNA--LKSLPEAWMYNSNS- 460 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L--~~L~l~~~~~--l~~l~~~~~~~~l~- 460 (857)
++|++|++++|.... .+|..++.+++|++|++++|. +.. ..+..+++| ++|+++++.. ....|..+.. +.
T Consensus 90 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~ 165 (520)
T 2z7x_B 90 VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNT 165 (520)
T ss_dssp CCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCE
T ss_pred CCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch-hhccccccceeeEEEeecccccccccccccccc--ccc
Confidence 888999999876544 467888889999999998874 333 234556677 8999888764 3444554332 22
Q ss_pred CccEEEEecCCCCCCCCC--CCCCCCccEEeccccc-------cccccChhhhccCCCCccEEEecCCCCCcc----ccc
Q 003013 461 SLESLKIRSCNSLVSFPE--IALPSQLRTVRIQECN-------ALKSLPEAWMHNSNSSLESLEIRSCDSLTY----IAR 527 (857)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~-------~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~----l~~ 527 (857)
..-.++++++.....++. +..+++|+.|+++++. ....+| .+.. +++|+.|++.++.--.. +..
T Consensus 166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~--l~~L~~L~l~~~~l~~~~~~~~~~ 242 (520)
T 2z7x_B 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQT--NPKLSNLTLNNIETTWNSFIRILQ 242 (520)
T ss_dssp EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGG--CTTCCEEEEEEEEEEHHHHHHHHH
T ss_pred ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcc--ccchhhccccccccCHHHHHHHHH
Confidence 122445555544444442 3567889999988864 112222 3333 68899998887532111 111
Q ss_pred ccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCch-hhHHHHHh
Q 003013 528 IQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLP-RALKYLVS 606 (857)
Q Consensus 528 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~~ 606 (857)
....++|+.|.++++.--..+.. . -+......+++|+.+++.++.- .+| .....
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~------------~--~~~~~~~~l~~L~~l~l~~n~~--------~~p~~~~~~--- 297 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDF------------R--DFDYSGTSLKALSIHQVVSDVF--------GFPQSYIYE--- 297 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCC------------C--CCCCCSCCCCEEEEEEEEECCC--------CSCTHHHHH---
T ss_pred HhhhCcccEEEeecccccCcccc------------c--hhhcccccCceeEeccccccce--------ecchhhhhc---
Confidence 11235788888877531111100 0 0000002345777888877632 112 11111
Q ss_pred hcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcc--c
Q 003013 607 LCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLK--A 684 (857)
Q Consensus 607 ~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~--~ 684 (857)
.+...+++.|++.++. +..++. ...+++|++|++++|.....+|..+..+++|++|++++|.... .
T Consensus 298 ----------~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 365 (520)
T 2z7x_B 298 ----------IFSNMNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK 365 (520)
T ss_dssp ----------HHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH
T ss_pred ----------ccccCceeEEEcCCCc-cccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc
Confidence 1112457788887753 333331 2578999999999996555577788889999999999976332 4
Q ss_pred CcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--
Q 003013 685 LPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP-- 760 (857)
Q Consensus 685 l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~-- 760 (857)
+|..+..+++|++|++++|.....+|.. ..+++|+.|++++|......+.. +. ++|++|++++ +.+..+|.
T Consensus 366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~--N~l~~ip~~~ 440 (520)
T 2z7x_B 366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHS--NKIKSIPKQV 440 (520)
T ss_dssp HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCS--SCCCCCCGGG
T ss_pred chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCC--Ccccccchhh
Confidence 5567889999999999999543337654 45689999999999876554332 21 7999999998 36777776
Q ss_pred -CCCCCCeEecCCCCCCcccCCC-CCCccccCceeccCCCC
Q 003013 761 -FPASLTELWISFMPDLECLSSI-GENLTSLKTLRLSYCRK 799 (857)
Q Consensus 761 -~~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~ 799 (857)
.+++|++|++++ +.++.+|.. ...+++|++|++++|+-
T Consensus 441 ~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 441 VKLEALQELNVAS-NQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp GGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hcCCCCCEEECCC-CcCCccCHHHhccCCcccEEECcCCCC
Confidence 578999999999 588999976 58899999999999963
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=6.2e-23 Score=225.30 Aligned_cols=389 Identities=23% Similarity=0.277 Sum_probs=185.3
Q ss_pred CCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCC------------CCceEEEccCC
Q 003013 330 LSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELP------------CRLRFLELSYC 397 (857)
Q Consensus 330 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~------------~~L~~L~L~~~ 397 (857)
...|+.+.+++.. +..+|..+ ..+++|++|+++++.-...+|.. ++.+. .++++|++++|
T Consensus 10 ~~~L~~L~l~~n~-l~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~------~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 10 NTFLQEPLRHSSN-LTEMPVEA-ENVKSKTEYYNAWSEWERNAPPG------NGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTT------SCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred cccchhhhcccCc-hhhCChhH-hcccchhhhhccCCcccccCCcc------cccchhcchhhhhhhhccCCCEEEecCC
Confidence 4556777776643 46667664 77788888888775433344443 33331 23477788776
Q ss_pred CCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC
Q 003013 398 QGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP 477 (857)
Q Consensus 398 ~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~ 477 (857)
. +..+|.. .++|++|++++| .+..+|. .+++|++|+++++. +..++.. .++|++|++++| .+..+|
T Consensus 82 ~-l~~lp~~---~~~L~~L~l~~n-~l~~lp~--~~~~L~~L~l~~n~-l~~l~~~-----~~~L~~L~L~~n-~l~~lp 147 (454)
T 1jl5_A 82 G-LSSLPEL---PPHLESLVASCN-SLTELPE--LPQSLKSLLVDNNN-LKALSDL-----PPLLEYLGVSNN-QLEKLP 147 (454)
T ss_dssp C-CSCCCSC---CTTCSEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCCSC-----CTTCCEEECCSS-CCSSCC
T ss_pred c-cccCCCC---cCCCCEEEccCC-cCCcccc--ccCCCcEEECCCCc-cCcccCC-----CCCCCEEECcCC-CCCCCc
Confidence 4 4556652 367788888776 4555664 24778888887765 6665542 367788888775 345577
Q ss_pred CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhccccccccc
Q 003013 478 EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSS 557 (857)
Q Consensus 478 ~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 557 (857)
.+..+++|++|+++++ .+..+|.. .++|+.|+++++ .++.++.+...++|+.|.++++. +.
T Consensus 148 ~~~~l~~L~~L~l~~N-~l~~lp~~-----~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~----------- 208 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNN-SLKKLPDL-----PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LK----------- 208 (454)
T ss_dssp CCTTCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CS-----------
T ss_pred ccCCCCCCCEEECCCC-cCcccCCC-----cccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CC-----------
Confidence 7777778888888775 45556543 256778887775 44445544555666666655531 11
Q ss_pred CCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCcccc
Q 003013 558 SRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSL 637 (857)
Q Consensus 558 ~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l 637 (857)
.+|. .+++|++|+++++ .++.++. .....+|+.|++++ ..+..+
T Consensus 209 --------~l~~---~~~~L~~L~l~~n-~l~~lp~-----------------------~~~l~~L~~L~l~~-N~l~~l 252 (454)
T 1jl5_A 209 --------KLPD---LPLSLESIVAGNN-ILEELPE-----------------------LQNLPFLTTIYADN-NLLKTL 252 (454)
T ss_dssp --------SCCC---CCTTCCEEECCSS-CCSSCCC-----------------------CTTCTTCCEEECCS-SCCSSC
T ss_pred --------cCCC---CcCcccEEECcCC-cCCcccc-----------------------cCCCCCCCEEECCC-CcCCcc
Confidence 1221 2246777777765 2222211 01123455555555 344444
Q ss_pred CcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCC
Q 003013 638 PAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTN 717 (857)
Q Consensus 638 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 717 (857)
|.. +++|+.|++++| .+..+|.. +++|++|++++|. ++.+|.. .++|++|++++| .+..++. .+++
T Consensus 253 ~~~---~~~L~~L~l~~N-~l~~l~~~---~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N-~l~~i~~--~~~~ 318 (454)
T 1jl5_A 253 PDL---PPSLEALNVRDN-YLTDLPEL---PQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSN-EIRSLCD--LPPS 318 (454)
T ss_dssp CSC---CTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSEESCC---CTTCCEEECCSS-CCSEECC--CCTT
T ss_pred ccc---ccccCEEECCCC-cccccCcc---cCcCCEEECcCCc-cCcccCc---CCcCCEEECcCC-cCCcccC--CcCc
Confidence 432 356666666665 34444432 2466666666643 4333321 256666666666 3444432 3456
Q ss_pred CCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcc---cCCCCCCc--------
Q 003013 718 LKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLEC---LSSIGENL-------- 786 (857)
Q Consensus 718 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~l-------- 786 (857)
|+.|++++|.... ++. .+++|++|++++ +.+..+|..+++|++|+++++ .++. +|.....+
T Consensus 319 L~~L~Ls~N~l~~-lp~----~~~~L~~L~L~~--N~l~~lp~~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~ 390 (454)
T 1jl5_A 319 LEELNVSNNKLIE-LPA----LPPRLERLIASF--NHLAEVPELPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAE 390 (454)
T ss_dssp CCEEECCSSCCSC-CCC----CCTTCCEEECCS--SCCSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC----
T ss_pred CCEEECCCCcccc-ccc----cCCcCCEEECCC--CccccccchhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccc
Confidence 6666666665432 222 246667777765 245556666666777777663 3333 44333444
Q ss_pred -----cccCceeccCCCCCCCCCCCCccccccceeecCC
Q 003013 787 -----TSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHC 820 (857)
Q Consensus 787 -----~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c 820 (857)
++|+.|++++| .+..+|. +|++++.|.+.+|
T Consensus 391 i~~~~~~L~~L~ls~N-~l~~~~~--iP~sl~~L~~~~~ 426 (454)
T 1jl5_A 391 VPELPQNLKQLHVETN-PLREFPD--IPESVEDLRMNSE 426 (454)
T ss_dssp ---------------------------------------
T ss_pred cccccCcCCEEECCCC-cCCcccc--chhhHhheeCcCc
Confidence 56666666666 4454544 6666666666655
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=4.5e-22 Score=220.93 Aligned_cols=152 Identities=21% Similarity=0.203 Sum_probs=92.2
Q ss_pred CCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCe
Q 003013 641 LHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKS 720 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~ 720 (857)
+..+++|+.|++++|. +..++. +..+++|++|++++|. +..++. +..+++|++|++++| .+..++....+++|+.
T Consensus 239 l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~ 313 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTY 313 (466)
T ss_dssp GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSE
T ss_pred hhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCC-cccCchhhcCCCCCCE
Confidence 3445666666666663 333332 4455667777776654 444443 566677777777766 3444443344566777
Q ss_pred EEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCC
Q 003013 721 LKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCR 798 (857)
Q Consensus 721 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 798 (857)
|++++|......+ +..+++|++|++++ | .+..++. .+++|+.|++++| .+..++. ...+++|+.|++++|
T Consensus 314 L~L~~n~l~~~~~---~~~l~~L~~L~l~~-n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n- 385 (466)
T 1o6v_A 314 LTLYFNNISDISP---VSSLTKLQRLFFYN-N-KVSDVSSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ- 385 (466)
T ss_dssp EECCSSCCSCCGG---GGGCTTCCEEECCS-S-CCCCCGGGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE-
T ss_pred EECcCCcCCCchh---hccCccCCEeECCC-C-ccCCchhhccCCCCCEEeCCCC-ccCccch-hhcCCCCCEEeccCC-
Confidence 7777765433321 45667777777776 2 3444432 4567777777774 5555553 678899999999999
Q ss_pred CCCCCCC
Q 003013 799 KLTYFSK 805 (857)
Q Consensus 799 ~l~~ip~ 805 (857)
.+..+|.
T Consensus 386 ~~~~~p~ 392 (466)
T 1o6v_A 386 AWTNAPV 392 (466)
T ss_dssp EEECCCB
T ss_pred cccCCch
Confidence 4555554
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.5e-21 Score=216.67 Aligned_cols=326 Identities=15% Similarity=0.218 Sum_probs=184.6
Q ss_pred hcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCC
Q 003013 353 QDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVAL 432 (857)
Q Consensus 353 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 432 (857)
..+++|++|+++++. +..++. +..+ ++|++|++++|. +..++. +..+++|++|++++| .+..++.+..
T Consensus 65 ~~l~~L~~L~Ls~n~-l~~~~~-------~~~l-~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~ 132 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQ-LTDITP-------LKNL-TKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDIDPLKN 132 (466)
T ss_dssp GGCTTCCEEECCSSC-CCCCGG-------GTTC-TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT
T ss_pred hhhcCCCEEECCCCc-cCCchh-------hhcc-ccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-CCCCChHHcC
Confidence 556667777776643 333321 3444 667777777654 344444 677777777777776 4555555666
Q ss_pred CCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCcc
Q 003013 433 PSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE 512 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~ 512 (857)
+++|++|++++|. +..++. +. .+++|++|++++ .+..++.+..+++|+.|+++++. +..++. +. .+++|+
T Consensus 133 l~~L~~L~l~~n~-l~~~~~-~~--~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-l~--~l~~L~ 202 (466)
T 1o6v_A 133 LTNLNRLELSSNT-ISDISA-LS--GLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK-VSDISV-LA--KLTNLE 202 (466)
T ss_dssp CTTCSEEEEEEEE-ECCCGG-GT--TCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GG--GCTTCS
T ss_pred CCCCCEEECCCCc-cCCChh-hc--cCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-CCCChh-hc--cCCCCC
Confidence 7777777777765 555553 22 277777777753 23444456667777777777743 444432 22 256777
Q ss_pred EEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccc
Q 003013 513 SLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLS 592 (857)
Q Consensus 513 ~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 592 (857)
.|++++|. +..+.+...+++|+.|+++++. +..+ . .+. .+++|+.|++++|
T Consensus 203 ~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~-------------~---~l~----~l~~L~~L~l~~n------- 253 (466)
T 1o6v_A 203 SLIATNNQ-ISDITPLGILTNLDELSLNGNQ-LKDI-------------G---TLA----SLTNLTDLDLANN------- 253 (466)
T ss_dssp EEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCC-------------G---GGG----GCTTCSEEECCSS-------
T ss_pred EEEecCCc-ccccccccccCCCCEEECCCCC-cccc-------------h---hhh----cCCCCCEEECCCC-------
Confidence 77777653 3333334445555555555431 1111 0 010 2245666666654
Q ss_pred cCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcc
Q 003013 593 RNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLT 672 (857)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~ 672 (857)
.+..++. +..+++|+.|++++| .+..++. +..+++|+
T Consensus 254 ----------------------------------------~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~ 290 (466)
T 1o6v_A 254 ----------------------------------------QISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALT 290 (466)
T ss_dssp ----------------------------------------CCCCCGG-GTTCTTCSEEECCSS-CCCCCGG-GTTCTTCS
T ss_pred ----------------------------------------ccccchh-hhcCCCCCEEECCCC-ccCcccc-ccCCCccC
Confidence 1222222 455677777777766 3444443 44566777
Q ss_pred eEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCC
Q 003013 673 ELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPC 752 (857)
Q Consensus 673 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 752 (857)
+|++++|. ++.++. +..+++|+.|++++|. +..++....+++|+.|++++|..... ..+..+++|++|++++ |
T Consensus 291 ~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~-n 363 (466)
T 1o6v_A 291 NLELNENQ-LEDISP-ISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGH-N 363 (466)
T ss_dssp EEECCSSC-CSCCGG-GGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCS-S
T ss_pred eEEcCCCc-ccCchh-hcCCCCCCEEECcCCc-CCCchhhccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCC-C
Confidence 77777654 444443 5667777777777773 33333334457777777777754332 2456677777777776 3
Q ss_pred CCCCCCCC--CCCCCCeEecCCCCCCcccCC
Q 003013 753 PDLVSPPP--FPASLTELWISFMPDLECLSS 781 (857)
Q Consensus 753 ~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~ 781 (857)
.+..+++ .+++|+.|++++ +.++.+|.
T Consensus 364 -~l~~~~~~~~l~~L~~L~l~~-n~~~~~p~ 392 (466)
T 1o6v_A 364 -QISDLTPLANLTRITQLGLND-QAWTNAPV 392 (466)
T ss_dssp -CCCBCGGGTTCTTCCEEECCC-EEEECCCB
T ss_pred -ccCccchhhcCCCCCEEeccC-CcccCCch
Confidence 3333322 567777777777 45666553
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=9.1e-22 Score=209.93 Aligned_cols=147 Identities=18% Similarity=0.269 Sum_probs=92.3
Q ss_pred hcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCC
Q 003013 353 QDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVAL 432 (857)
Q Consensus 353 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 432 (857)
..+++|+.|+++++. +..++ .+..+ ++|++|++++| .+..++. +..+++|++|++++| .+..++.+..
T Consensus 41 ~~l~~L~~L~l~~~~-i~~~~-------~~~~~-~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~ 108 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VASIQ-------GIEYL-TNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISALQN 108 (347)
T ss_dssp HHHTTCSEEECCSSC-CCCCT-------TGGGC-TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT
T ss_pred hhcccccEEEEeCCc-cccch-------hhhhc-CCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHHcC
Confidence 455667777777643 33332 13334 67777777776 3455555 777777777777776 5556666677
Q ss_pred CCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCcc
Q 003013 433 PSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE 512 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~ 512 (857)
+++|++|+++++. +..++. +. .+++|++|++++|.....++.+..+++|++|++++|. +..++. +. .+++|+
T Consensus 109 l~~L~~L~l~~n~-i~~~~~-~~--~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~--~l~~L~ 180 (347)
T 4fmz_A 109 LTNLRELYLNEDN-ISDISP-LA--NLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IA--NLTDLY 180 (347)
T ss_dssp CTTCSEEECTTSC-CCCCGG-GT--TCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GG--GCTTCS
T ss_pred CCcCCEEECcCCc-ccCchh-hc--cCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh-hc--cCCCCC
Confidence 7777777777765 566655 32 2777777777777666666666667777777777653 333333 21 256666
Q ss_pred EEEecCC
Q 003013 513 SLEIRSC 519 (857)
Q Consensus 513 ~L~l~~c 519 (857)
.|++++|
T Consensus 181 ~L~l~~n 187 (347)
T 4fmz_A 181 SLSLNYN 187 (347)
T ss_dssp EEECTTS
T ss_pred EEEccCC
Confidence 7666664
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.8e-21 Score=214.64 Aligned_cols=135 Identities=19% Similarity=0.114 Sum_probs=72.9
Q ss_pred CCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEE
Q 003013 645 HHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLK 722 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~ 722 (857)
++|+.|++++|......+..+..+++|++|++++|......|..+..+++|++|++++| .+..++.. ..+++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEE
Confidence 45666666665443334444555566666666665433333445566666666666666 33333221 3345566666
Q ss_pred ecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCCCC
Q 003013 723 VHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLT 801 (857)
Q Consensus 723 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~ 801 (857)
+++|... .+.+..+..+++|++|++++ ++++.++... ..+++|+.|++++|+--.
T Consensus 354 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 354 LSYNHIR-ALGDQSFLGLPNLKELALDT-----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCS-----------------------SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccc-ccChhhccccccccEEECCC-----------------------CccccCCHhHhccCCcccEEEccCCCccc
Confidence 6665442 22223455566666666665 4455555443 566677777777765444
Q ss_pred CCC
Q 003013 802 YFS 804 (857)
Q Consensus 802 ~ip 804 (857)
..|
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=4.2e-21 Score=223.45 Aligned_cols=195 Identities=18% Similarity=0.134 Sum_probs=142.4
Q ss_pred CCcceeeccCcCC--ccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc-cCCCCCCccE
Q 003013 621 TSLEGIFIYELEN--LKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN-CMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~--l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~ 697 (857)
++++.++++.... ....+.....+.+|+.|++..+. ...++..+..+++|+.+++.++......+. .+..+++|+.
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~ 449 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 449 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhcccccccccccccccccccc
Confidence 4555665554221 11234444567788888887763 444556677788999999988766554443 5678899999
Q ss_pred EeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecC
Q 003013 698 LEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWIS 771 (857)
Q Consensus 698 L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~ 771 (857)
++++.+. +...+.. ..+++|+.|++++|.....+.+..+..+++|++|++++ | .+..+++ .+++|++|+++
T Consensus 450 l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N-~L~~l~~~~f~~l~~L~~L~Ls 526 (635)
T 4g8a_A 450 LDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-C-QLEQLSPTAFNSLSSLQVLNMS 526 (635)
T ss_dssp EECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-S-CCCEECTTTTTTCTTCCEEECT
T ss_pred ccccccc-cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-C-ccCCcChHHHcCCCCCCEEECC
Confidence 9999884 4444333 45689999999999877766666788999999999998 3 5666544 56899999999
Q ss_pred CCCCCcccCCCC-CCccccCceeccCCCCCCCCCCC---CccccccceeecCCc
Q 003013 772 FMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYFSKE---GLPKSLLRLYINHCP 821 (857)
Q Consensus 772 ~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~---~l~~~L~~L~i~~c~ 821 (857)
+ ++++.++... ..+++|+.|++++| ++..++.. .++++|+.|+++++|
T Consensus 527 ~-N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 527 H-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp T-SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred C-CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 9 6888887654 88999999999999 66666554 456799999998765
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=5.1e-22 Score=220.60 Aligned_cols=350 Identities=15% Similarity=0.153 Sum_probs=183.4
Q ss_pred CCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeecccccccccc-chhhhcCCCC
Q 003013 384 ELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSL-PEAWMYNSNS 460 (857)
Q Consensus 384 ~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~l~ 460 (857)
.+|++|++|+|++|......|..+..+++|++|++++|.....++ .+..+++|++|+++++. +..+ |..+.. ++
T Consensus 27 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~--l~ 103 (455)
T 3v47_A 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNG--LA 103 (455)
T ss_dssp CCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTT--CT
T ss_pred CCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccC--cc
Confidence 345667777777664433336667777777777777764433443 25556777777777765 4443 444544 67
Q ss_pred CccEEEEecCCCCCCCC-C--CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccC----CCc
Q 003013 461 SLESLKIRSCNSLVSFP-E--IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQL----PPS 533 (857)
Q Consensus 461 ~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~----~~~ 533 (857)
+|++|++++|.....++ . +..+++|++|+++++......|..+.. .+++|+.|+++++. ++.+....+ ...
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL-NMRRFHVLDLTFNK-VKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG-GCTTCCEEECTTCC-BSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC-CCCcccEEeCCCCc-ccccChhhhhcccccc
Confidence 77777776654322222 2 456677777777775432222433222 25777777777643 221111000 123
Q ss_pred ccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhh
Q 003013 534 LKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLES 613 (857)
Q Consensus 534 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 613 (857)
++.|.++++.- ..+.... ......+. ....++|++|+++++.-
T Consensus 182 L~~L~l~~n~l-~~~~~~~---------~~~~~~~~-~~~~~~L~~L~Ls~n~l-------------------------- 224 (455)
T 3v47_A 182 FTLLRLSSITL-QDMNEYW---------LGWEKCGN-PFKNTSITTLDLSGNGF-------------------------- 224 (455)
T ss_dssp EEEEECTTCBC-TTCSTTC---------TTHHHHCC-TTTTCEEEEEECTTSCC--------------------------
T ss_pred ccccccccCcc-cccchhh---------cccccccc-ccccceeeeEecCCCcc--------------------------
Confidence 33333333210 0000000 00000000 00113566666655521
Q ss_pred hhhccCCCCcceeeccCcCCccccCcCC---CCCCCCCeEEeecCCCCccc------------CCCCCCCCCcceEeecc
Q 003013 614 LAERLDNTSLEGIFIYELENLKSLPAGL---HNLHHLQKISIADCPNLESF------------PEEGLPSTKLTELSIRE 678 (857)
Q Consensus 614 l~~~~~~~~L~~l~l~~~~~l~~l~~~~---~~l~~L~~L~l~~c~~l~~l------------~~~~~~~~~L~~L~l~~ 678 (857)
....|..+ ...++|+.|++++|...... .......++|++|++++
T Consensus 225 --------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 225 --------------------KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp --------------------CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred --------------------cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 11111111 11244555555544322110 00111235777777777
Q ss_pred ccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCC
Q 003013 679 CENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLV 756 (857)
Q Consensus 679 c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~ 756 (857)
|......|..+..+++|++|++++|. +..++.. ..+++|+.|++++|.. ..+....+..+++|++|++++
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~------ 356 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSY------ 356 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCS------
T ss_pred ccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCC------
Confidence 66555556667777777777777773 4444322 3346677777776654 333333455556666666655
Q ss_pred CCCCCCCCCCeEecCCCCCCccc-CCCCCCccccCceeccCCCCCCCCCCCCc--cccccceeecCCc
Q 003013 757 SPPPFPASLTELWISFMPDLECL-SSIGENLTSLKTLRLSYCRKLTYFSKEGL--PKSLLRLYINHCP 821 (857)
Q Consensus 757 ~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ip~~~l--~~~L~~L~i~~c~ 821 (857)
+.++.+ |.....+++|++|++++| .++.+|...+ .++|+.|++++||
T Consensus 357 -----------------N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 357 -----------------NHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -----------------SCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -----------------CcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 456666 444588999999999998 7888887432 3799999998865
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1.2e-21 Score=208.93 Aligned_cols=300 Identities=17% Similarity=0.154 Sum_probs=167.2
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 466 (857)
++|++|+++++. +..+|. +..+++|++|++++| .+..++.+..+++|++|++++|. ++.++. +.. +++|++|+
T Consensus 44 ~~L~~L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~l~~L~~L~L~~n~-i~~~~~-~~~--l~~L~~L~ 116 (347)
T 4fmz_A 44 ESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGN-QITDISPLSNLVKLTNLYIGTNK-ITDISA-LQN--LTNLRELY 116 (347)
T ss_dssp TTCSEEECCSSC-CCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GTT--CTTCSEEE
T ss_pred ccccEEEEeCCc-cccchh-hhhcCCccEEEccCC-ccccchhhhcCCcCCEEEccCCc-ccCchH-HcC--CCcCCEEE
Confidence 667777777653 345553 666777777777776 45555556667777777777664 555543 222 66677777
Q ss_pred EecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCch
Q 003013 467 IRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLR 546 (857)
Q Consensus 467 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~ 546 (857)
+++|. +..++.+..+++|+.|++++|..+..++. + ..+++|+.|++++|.. ..++.+.
T Consensus 117 l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~--~~l~~L~~L~l~~~~~-~~~~~~~----------------- 174 (347)
T 4fmz_A 117 LNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSP-L--SNMTGLNYLTVTESKV-KDVTPIA----------------- 174 (347)
T ss_dssp CTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGG-G--TTCTTCCEEECCSSCC-CCCGGGG-----------------
T ss_pred CcCCc-ccCchhhccCCceeEEECCCCCCcccccc-h--hhCCCCcEEEecCCCc-CCchhhc-----------------
Confidence 76643 44444455566666666666554444333 2 1245566665555421 1110000
Q ss_pred hhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCccee
Q 003013 547 TLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGI 626 (857)
Q Consensus 547 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l 626 (857)
.+++|++|++++|
T Consensus 175 --------------------------~l~~L~~L~l~~n----------------------------------------- 187 (347)
T 4fmz_A 175 --------------------------NLTDLYSLSLNYN----------------------------------------- 187 (347)
T ss_dssp --------------------------GCTTCSEEECTTS-----------------------------------------
T ss_pred --------------------------cCCCCCEEEccCC-----------------------------------------
Confidence 1245666666654
Q ss_pred eccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCC
Q 003013 627 FIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSV 706 (857)
Q Consensus 627 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l 706 (857)
.+..++. +..+++|+.|++++| .+..++. +..+++|++|++++|. +..++. +..+++|++|++++| .+
T Consensus 188 ------~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l 255 (347)
T 4fmz_A 188 ------QIEDISP-LASLTSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QI 255 (347)
T ss_dssp ------CCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CC
T ss_pred ------ccccccc-ccCCCccceeecccC-CCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-cc
Confidence 1122222 445677888888876 3444333 4556778888887764 455554 677778888888777 44
Q ss_pred cccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCC-CCC
Q 003013 707 VSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSI-GEN 785 (857)
Q Consensus 707 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~ 785 (857)
..++....+++|+.|++++|.... + ..+..+++|++|++++ | .++..+.. ...
T Consensus 256 ~~~~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~L~~----------------------n-~l~~~~~~~l~~ 309 (347)
T 4fmz_A 256 SDINAVKDLTKLKMLNVGSNQISD-I--SVLNNLSQLNSLFLNN----------------------N-QLGNEDMEVIGG 309 (347)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCS----------------------S-CCCGGGHHHHHT
T ss_pred CCChhHhcCCCcCEEEccCCccCC-C--hhhcCCCCCCEEECcC----------------------C-cCCCcChhHhhc
Confidence 444433455677777777664432 2 1344555555555555 3 33332212 245
Q ss_pred ccccCceeccCCCCCCCCCCCCccccccceeecCCc
Q 003013 786 LTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCP 821 (857)
Q Consensus 786 l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c~ 821 (857)
+++|+.|++++|+ +..++...-.++|+.|++++|+
T Consensus 310 l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 310 LTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC-
T ss_pred cccCCEEEccCCc-cccccChhhhhccceeehhhhc
Confidence 6667777777663 4444332222566777776664
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=3.3e-20 Score=211.32 Aligned_cols=431 Identities=13% Similarity=0.119 Sum_probs=260.1
Q ss_pred CCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCC
Q 003013 309 PALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELP 386 (857)
Q Consensus 309 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~ 386 (857)
++++.|+++++..... ..+..+++|+.|+++++ .+..++.+.+..+++|++|+++++. +..+|.. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--------~l- 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--------PM- 120 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--------CC-
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--------cc-
Confidence 5677777777764433 25667777777777764 3455555556777788888887744 5555432 34
Q ss_pred CCceEEEccCCCCCC-cchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCc--ceeecccccc--ccccchhhhcCCCC-
Q 003013 387 CRLRFLELSYCQGLT-KLPQALLTLCSLTDMKILGCASLVSFPEVALPSQL--RTVRIQECNA--LKSLPEAWMYNSNS- 460 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L--~~L~l~~~~~--l~~l~~~~~~~~l~- 460 (857)
++|++|++++|.... .+|..++.+++|++|++++|. +.. ..+..+++| ++|+++++.. ....|..+.. +.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~--l~~ 196 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI--PNT 196 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE--CCE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc-CchhhhhhceeeEEEeecccccccccCcccccc--cCc
Confidence 778888888765322 234677778888888887763 332 123344444 7787777653 2333333322 21
Q ss_pred CccEEEEecCCCCCCCCC--CCCCCCccEEeccccc----cccccChhhhccCCCCccEEEecCCCCC----cccccccC
Q 003013 461 SLESLKIRSCNSLVSFPE--IALPSQLRTVRIQECN----ALKSLPEAWMHNSNSSLESLEIRSCDSL----TYIARIQL 530 (857)
Q Consensus 461 ~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~----~l~~lp~~~~~~~l~~L~~L~l~~c~~l----~~l~~~~~ 530 (857)
..-.++++++.....++. ...+++|+.++++++. .+......+.. +++|+.|++.++..- ..++....
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~--l~~L~~L~L~~~~l~~~~~~~~~~~~~ 274 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR--GPTLLNVTLQHIETTWKCSVKLFQFFW 274 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS--CSSCEEEEEEEEEECHHHHHHHHHHHT
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc--cCcceEEEecCCcCcHHHHHHHHHhhh
Confidence 011334444433333332 2456677777777642 12222222222 567777776654211 11111122
Q ss_pred CCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCc
Q 003013 531 PPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSK 610 (857)
Q Consensus 531 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 610 (857)
.++|+.|+++++.--..+... .|.. ..++++.|.+.++..-.. .+|.....
T Consensus 275 ~~~L~~L~l~~n~l~~~ip~~--------------~~~~---~~~~L~~L~~~~~~~~~~-----~~p~~~~~------- 325 (562)
T 3a79_B 275 PRPVEYLNIYNLTITERIDRE--------------EFTY---SETALKSLMIEHVKNQVF-----LFSKEALY------- 325 (562)
T ss_dssp TSSEEEEEEEEEEECSCCCCC--------------CCCC---CSCSCCEEEEEEEEECCC-----SSCHHHHH-------
T ss_pred cccccEEEEeccEeeccccch--------------hhhc---ccccchheehhhccccee-----ecChhhhh-------
Confidence 347777777765311111000 0000 013455555544321110 12211000
Q ss_pred hhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccC---cc
Q 003013 611 LESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKAL---PN 687 (857)
Q Consensus 611 l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l---~~ 687 (857)
..+...+++.+++.++. +..++. ...+++|++|++++|.....+|..+..+++|++|+++++. ++.+ |.
T Consensus 326 -----~~~~~~~L~~L~l~~n~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 397 (562)
T 3a79_B 326 -----SVFAEMNIKMLSISDTP-FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVAL 397 (562)
T ss_dssp -----HHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHH
T ss_pred -----hhhccCcceEEEccCCC-cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchh
Confidence 01112457777777743 333321 2578999999999986555577778889999999999964 5544 45
Q ss_pred cCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCC-CCccEeEEcCCCCCCCCCCC---C
Q 003013 688 CMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRF-TSLRKLEIWGPCPDLVSPPP---F 761 (857)
Q Consensus 688 ~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~l~~~~~---~ 761 (857)
.+..+++|++|++++|.....+|.. ..+++|+.|++++|.....++. .+ ++|++|++++ +.+..+|. .
T Consensus 398 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~--N~l~~ip~~~~~ 471 (562)
T 3a79_B 398 MTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHN--NRIMSIPKDVTH 471 (562)
T ss_dssp TTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS----SCCTTCSEEECCS--SCCCCCCTTTTS
T ss_pred hhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh----hhcCcCCEEECCC--CcCcccChhhcC
Confidence 6889999999999999543336654 4568999999999987554432 34 6999999998 37777876 5
Q ss_pred CCCCCeEecCCCCCCcccCCC-CCCccccCceeccCCCCC
Q 003013 762 PASLTELWISFMPDLECLSSI-GENLTSLKTLRLSYCRKL 800 (857)
Q Consensus 762 ~~~L~~L~l~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l 800 (857)
+++|+.|++++ ++++.+|.. ...+++|+.|++++||--
T Consensus 472 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 472 LQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SCCCSEEECCS-SCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCEEECCC-CCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 68999999999 689999987 588999999999999643
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=3.5e-20 Score=203.55 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=83.9
Q ss_pred hcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCC
Q 003013 353 QDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVAL 432 (857)
Q Consensus 353 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 432 (857)
..+++|++|+++++ .+..++ .+..+ ++|++|++++|. +..+| ++.+++|++|++++| .+..++ ++.
T Consensus 39 ~~l~~L~~L~Ls~n-~l~~~~-------~l~~l-~~L~~L~Ls~n~-l~~~~--~~~l~~L~~L~Ls~N-~l~~~~-~~~ 104 (457)
T 3bz5_A 39 EQLATLTSLDCHNS-SITDMT-------GIEKL-TGLTKLICTSNN-ITTLD--LSQNTNLTYLACDSN-KLTNLD-VTP 104 (457)
T ss_dssp HHHTTCCEEECCSS-CCCCCT-------TGGGC-TTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC-CTT
T ss_pred hHcCCCCEEEccCC-CcccCh-------hhccc-CCCCEEEccCCc-CCeEc--cccCCCCCEEECcCC-CCceee-cCC
Confidence 45667777777774 344332 13444 677777777654 44454 666777777777776 344454 566
Q ss_pred CCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCcc
Q 003013 433 PSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE 512 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~ 512 (857)
+++|++|+++++. ++.++ +. .+++|++|++++|. +..++ ++.+++|+.|+++++..+..++. ..+++|+
T Consensus 105 l~~L~~L~L~~N~-l~~l~--~~--~l~~L~~L~l~~N~-l~~l~-l~~l~~L~~L~l~~n~~~~~~~~----~~l~~L~ 173 (457)
T 3bz5_A 105 LTKLTYLNCDTNK-LTKLD--VS--QNPLLTYLNCARNT-LTEID-VSHNTQLTELDCHLNKKITKLDV----TPQTQLT 173 (457)
T ss_dssp CTTCCEEECCSSC-CSCCC--CT--TCTTCCEEECTTSC-CSCCC-CTTCTTCCEEECTTCSCCCCCCC----TTCTTCC
T ss_pred CCcCCEEECCCCc-CCeec--CC--CCCcCCEEECCCCc-cceec-cccCCcCCEEECCCCCccccccc----ccCCcCC
Confidence 7777777777665 55554 22 26777777776643 34442 55666677777766655544421 1256666
Q ss_pred EEEecCC
Q 003013 513 SLEIRSC 519 (857)
Q Consensus 513 ~L~l~~c 519 (857)
.|+++++
T Consensus 174 ~L~ls~n 180 (457)
T 3bz5_A 174 TLDCSFN 180 (457)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 6666664
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=5.5e-20 Score=202.02 Aligned_cols=308 Identities=18% Similarity=0.204 Sum_probs=206.4
Q ss_pred CCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCC
Q 003013 382 QPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSS 461 (857)
Q Consensus 382 i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 461 (857)
++.+ ++|++|++++|. +..+| .+..+++|++|++++| .+..+| ++.+++|++|++++|. ++.++ +. .+++
T Consensus 38 ~~~l-~~L~~L~Ls~n~-l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~-~~~l~~L~~L~Ls~N~-l~~~~--~~--~l~~ 107 (457)
T 3bz5_A 38 EEQL-ATLTSLDCHNSS-ITDMT-GIEKLTGLTKLICTSN-NITTLD-LSQNTNLTYLACDSNK-LTNLD--VT--PLTK 107 (457)
T ss_dssp HHHH-TTCCEEECCSSC-CCCCT-TGGGCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCC--CT--TCTT
T ss_pred hhHc-CCCCEEEccCCC-cccCh-hhcccCCCCEEEccCC-cCCeEc-cccCCCCCEEECcCCC-Cceee--cC--CCCc
Confidence 3445 899999999974 56677 6899999999999998 566665 7889999999999987 77775 33 3999
Q ss_pred ccEEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeecc
Q 003013 462 LESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSD 541 (857)
Q Consensus 462 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 541 (857)
|++|++++| .+..++ +..+++|++|+++++ .+..++ + ..+++|+.|++++|..+..+ .+...++|+.|++++
T Consensus 108 L~~L~L~~N-~l~~l~-~~~l~~L~~L~l~~N-~l~~l~--l--~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 108 LTYLNCDTN-KLTKLD-VSQNPLLTYLNCARN-TLTEID--V--SHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CCEEECCSS-CCSCCC-CTTCTTCCEEECTTS-CCSCCC--C--TTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCS
T ss_pred CCEEECCCC-cCCeec-CCCCCcCCEEECCCC-ccceec--c--ccCCcCCEEECCCCCccccc-ccccCCcCCEEECCC
Confidence 999999886 455565 788899999999985 455554 2 23788999999988666654 233445566665554
Q ss_pred CCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCC
Q 003013 542 CCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNT 621 (857)
Q Consensus 542 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 621 (857)
+. ++ .++ ...+++|+.|+++++
T Consensus 180 n~-l~-------------------~l~--l~~l~~L~~L~l~~N------------------------------------ 201 (457)
T 3bz5_A 180 NK-IT-------------------ELD--VSQNKLLNRLNCDTN------------------------------------ 201 (457)
T ss_dssp SC-CC-------------------CCC--CTTCTTCCEEECCSS------------------------------------
T ss_pred Cc-cc-------------------eec--cccCCCCCEEECcCC------------------------------------
Confidence 31 11 111 002235555555543
Q ss_pred CcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEE---
Q 003013 622 SLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNL--- 698 (857)
Q Consensus 622 ~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L--- 698 (857)
.+..+ .+..+++|+.|++++| .+..+| +..+++|++|+++++. ++.+| +..+++|+.|
T Consensus 202 -----------~l~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 202 -----------NITKL--DLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp -----------CCSCC--CCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECT
T ss_pred -----------cCCee--ccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEecc
Confidence 23333 2667889999999987 566676 6677899999999865 55554 3445555544
Q ss_pred -------eecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecC
Q 003013 699 -------EIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWIS 771 (857)
Q Consensus 699 -------~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~ 771 (857)
++++|..+..+|. +.+++|+.|++++|..+..++. ..++|+.|++++ .++|++|+++
T Consensus 263 ~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~-----------~~~L~~L~L~ 326 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQ-----------NPKLVYLYLN 326 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTT-----------CTTCCEEECT
T ss_pred CCCCCEEECCCCccCCcccc-cccccCCEEECCCCcccceecc----CCCcceEechhh-----------cccCCEEECC
Confidence 4444444444443 2346677777777766555432 334555555554 2567778877
Q ss_pred CCCCCcccCCCCCCccccCceeccCCCCCCCCC
Q 003013 772 FMPDLECLSSIGENLTSLKTLRLSYCRKLTYFS 804 (857)
Q Consensus 772 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ip 804 (857)
+ ++++.++ ...+++|+.|++++| .+..++
T Consensus 327 ~-N~l~~l~--l~~l~~L~~L~l~~N-~l~~l~ 355 (457)
T 3bz5_A 327 N-TELTELD--VSHNTKLKSLSCVNA-HIQDFS 355 (457)
T ss_dssp T-CCCSCCC--CTTCTTCSEEECCSS-CCCBCT
T ss_pred C-Ccccccc--cccCCcCcEEECCCC-CCCCcc
Confidence 7 5677663 577889999999888 565554
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=6.3e-20 Score=204.79 Aligned_cols=288 Identities=20% Similarity=0.274 Sum_probs=154.1
Q ss_pred CCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcC-C-CCCCCCCcceeeccccccccccchhhhcCCCCCcc
Q 003013 386 PCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSF-P-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLE 463 (857)
Q Consensus 386 ~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 463 (857)
|.++++|+|++|......|..+..+++|++|++++| .+..+ | .++.+++|++|+++++. ++.+|.... ..+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCCCCCC
Confidence 456666666665432223455666666666666665 33333 2 24556666666666654 555554321 2266666
Q ss_pred EEEEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccC
Q 003013 464 SLKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDC 542 (857)
Q Consensus 464 ~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~ 542 (857)
+|++++|......+ .+..+++|+.|+++++. +..++...+. .+++|+.|+++++. ++.++..
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~-------------- 170 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFS-GLNSLEQLTLEKCN-LTSIPTE-------------- 170 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSST-TCTTCCEEEEESCC-CSSCCHH--------------
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhcc-CCCCCCEEECCCCc-CcccChh--------------
Confidence 66666643322222 23555666666666632 3333222111 24566666666542 2211100
Q ss_pred CCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCC
Q 003013 543 CNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTS 622 (857)
Q Consensus 543 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 622 (857)
.+. .+++|+.|++.++.
T Consensus 171 -----------------------~l~----~l~~L~~L~l~~n~------------------------------------ 187 (477)
T 2id5_A 171 -----------------------ALS----HLHGLIVLRLRHLN------------------------------------ 187 (477)
T ss_dssp -----------------------HHT----TCTTCCEEEEESCC------------------------------------
T ss_pred -----------------------Hhc----ccCCCcEEeCCCCc------------------------------------
Confidence 000 11355555555541
Q ss_pred cceeeccCcCCcccc-CcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEee
Q 003013 623 LEGIFIYELENLKSL-PAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEI 700 (857)
Q Consensus 623 L~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l 700 (857)
+..+ +..+..+++|+.|++++|..+..++.......+|++|++++|. ++.+| ..+..+++|++|++
T Consensus 188 -----------i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 255 (477)
T 2id5_A 188 -----------INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNL 255 (477)
T ss_dssp -----------CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEEC
T ss_pred -----------CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeEC
Confidence 1111 2234556777777777777676666666555677777777754 45555 34566777777777
Q ss_pred cCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCC
Q 003013 701 RRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISF 772 (857)
Q Consensus 701 ~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~ 772 (857)
++|. +..++.. ..+++|+.|++++|.... +.+..+..+++|++|++++ +.+..+++ .+++|++|++++
T Consensus 256 s~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SYNP-ISTIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSG--NQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CSSC-CCEECTTSCTTCTTCCEEECCSSCCSE-ECTTTBTTCTTCCEEECCS--SCCSCCCGGGBSCGGGCCEEECCS
T ss_pred CCCc-CCccChhhccccccCCEEECCCCccce-ECHHHhcCcccCCEEECCC--CcCceeCHhHcCCCcccCEEEccC
Confidence 7763 4444433 334677777777765433 3333566677777777776 24444443 345566666655
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=1.6e-19 Score=195.72 Aligned_cols=305 Identities=16% Similarity=0.175 Sum_probs=170.4
Q ss_pred CCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCC
Q 003013 330 LSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLT 409 (857)
Q Consensus 330 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~ 409 (857)
+++++.+++.+. .+..+|..++..+++|++|+++++. +..++.. .+..+ ++|++|++++|......|..+..
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~-----~~~~l-~~L~~L~L~~n~l~~~~~~~~~~ 115 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-----AFAYA-HTIQKLYMGFNAIRYLPPHVFQN 115 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-----TTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChh-----hccCC-CCcCEEECCCCCCCcCCHHHhcC
Confidence 456666766663 4666788888888888888888854 4444332 25555 78888888887543344556778
Q ss_pred CCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchh-hhcCCCCCccEEEEecCCCCCCCCCCCCCCCcc
Q 003013 410 LCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEA-WMYNSNSSLESLKIRSCNSLVSFPEIALPSQLR 486 (857)
Q Consensus 410 l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 486 (857)
+++|++|++++| .+..+|. ++.+++|++|+++++. +..++.. +.. +++|++|++++|. +..+ ....+++|+
T Consensus 116 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L~~L~l~~n~-l~~~-~~~~l~~L~ 189 (390)
T 3o6n_A 116 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA--TTSLQNLQLSSNR-LTHV-DLSLIPSLF 189 (390)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSS--CTTCCEEECCSSC-CSBC-CGGGCTTCS
T ss_pred CCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccC--CCCCCEEECCCCc-CCcc-ccccccccc
Confidence 888888888877 4555553 3567788888888766 5555433 333 7777777777653 3333 234556666
Q ss_pred EEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccc
Q 003013 487 TVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTS 566 (857)
Q Consensus 487 ~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~ 566 (857)
.|+++++ .+..++. .++|+.|+++++. +..++. ..+
T Consensus 190 ~L~l~~n-~l~~~~~------~~~L~~L~l~~n~-l~~~~~-~~~----------------------------------- 225 (390)
T 3o6n_A 190 HANVSYN-LLSTLAI------PIAVEELDASHNS-INVVRG-PVN----------------------------------- 225 (390)
T ss_dssp EEECCSS-CCSEEEC------CSSCSEEECCSSC-CCEEEC-CCC-----------------------------------
T ss_pred eeecccc-cccccCC------CCcceEEECCCCe-eeeccc-ccc-----------------------------------
Confidence 6666663 2333221 2456666666532 222211 112
Q ss_pred cCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCC
Q 003013 567 FSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHH 646 (857)
Q Consensus 567 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~ 646 (857)
++|+.|+++++. ++... .-...++|+.|+++++.--...|..+..+++
T Consensus 226 --------~~L~~L~l~~n~-l~~~~-----------------------~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 226 --------VELTILKLQHNN-LTDTA-----------------------WLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp --------SSCCEEECCSSC-CCCCG-----------------------GGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred --------ccccEEECCCCC-CcccH-----------------------HHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 345555555541 11000 0000122333333332111122445556666
Q ss_pred CCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCC
Q 003013 647 LQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDL 726 (857)
Q Consensus 647 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~ 726 (857)
|++|++++| .+..++.....+++|++|++++|. +..+|..+..+++|++|++++|+ +..++. ..+++|+.|++++|
T Consensus 274 L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~-~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 274 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSS
T ss_pred CCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeCc-hhhccCCEEEcCCC
Confidence 666666665 455555555556666666666653 55566555566666666666663 444432 33456666666665
Q ss_pred CC
Q 003013 727 KI 728 (857)
Q Consensus 727 ~~ 728 (857)
+.
T Consensus 350 ~~ 351 (390)
T 3o6n_A 350 DW 351 (390)
T ss_dssp CE
T ss_pred Cc
Confidence 43
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=3.9e-19 Score=206.77 Aligned_cols=454 Identities=17% Similarity=0.124 Sum_probs=258.5
Q ss_pred CCchhcc-cccchhcccc--cchh-hhccCCCCccEEeecCcccccc--cCCCCCCCceEEecCCcccceeehhhhhhcC
Q 003013 282 TLPKRLL-LLDTLYITSC--DQLL-MTIQCLPALSKLLIHGCKRVVF--SGPMDLSSLKSVDLVDIANEVVLAGLFEQDI 355 (857)
Q Consensus 282 ~lp~~l~-~L~~l~~~~c--~~l~-~~~~~l~~l~~l~l~~~~~~~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~ 355 (857)
.+|..++ .++.+.++.. ..++ .++..+++|+.|++++|.-..+ .++..+++|++|+++++ .+..++.+.|..+
T Consensus 45 ~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L 123 (635)
T 4g8a_A 45 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL 123 (635)
T ss_dssp SCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTC
T ss_pred ccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCC
Confidence 3555443 4555555443 2343 4577778888888887764333 24667788888888774 4666777777778
Q ss_pred CCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCC-cchhhhCCCCCCcEEeEcCCCCCCcCC--CCCC
Q 003013 356 ISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLT-KLPQALLTLCSLTDMKILGCASLVSFP--EVAL 432 (857)
Q Consensus 356 ~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~ 432 (857)
++|++|+++++ .+..++.. .++.+ ++|++|++++|.... .+|..+..+++|++|++++|. +..++ .+..
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~-----~~~~L-~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~ 195 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENF-----PIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRV 195 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTC-----CCTTC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHH
T ss_pred CCCCEEECCCC-cCCCCChh-----hhhcC-cccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccc
Confidence 88888888775 35554432 25566 778888888765422 356777778888888887763 33322 1111
Q ss_pred CCCc----ceeeccccccccccchhhhcCCCCCccEEEEecCCC---------------------------CCCCC----
Q 003013 433 PSQL----RTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNS---------------------------LVSFP---- 477 (857)
Q Consensus 433 l~~L----~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~---------------------------~~~~~---- 477 (857)
+.++ ..++++.+. +..++..... ...+..+++.++.. ...+.
T Consensus 196 L~~l~~~~~~~~ls~n~-l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 196 LHQMPLLNLSLDLSLNP-MNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp HHTCTTCCCEEECTTCC-CCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred hhhhhhhhhhhhcccCc-ccccCccccc--chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 2211 233333322 3333322211 22222333322110 00000
Q ss_pred ----------------------------CCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCccccccc
Q 003013 478 ----------------------------EIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQ 529 (857)
Q Consensus 478 ----------------------------~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 529 (857)
......+++.+.+.++.. ..++.. ....+|+.|++.++.. ..+.. .
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~---~~~~~L~~L~l~~~~~-~~~~~-~ 346 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ERVKDF---SYNFGWQHLELVNCKF-GQFPT-L 346 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EECGGG---GSCCCCSEEEEESCEE-SSCCC-C
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-cccccc---ccchhhhhhhcccccc-cCcCc-c
Confidence 001123344444444221 122221 1246788998888642 22211 2
Q ss_pred CCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcC
Q 003013 530 LPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCS 609 (857)
Q Consensus 530 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~ 609 (857)
..+.++.+.+.+...-. .+.. ..+++|+.|+++++.-..... .+.
T Consensus 347 ~l~~L~~l~l~~n~~~~--------------------~~~~-~~l~~L~~L~ls~n~l~~~~~----~~~---------- 391 (635)
T 4g8a_A 347 KLKSLKRLTFTSNKGGN--------------------AFSE-VDLPSLEFLDLSRNGLSFKGC----CSQ---------- 391 (635)
T ss_dssp BCTTCCEEEEESCCSCC--------------------BCCC-CBCTTCCEEECCSSCCBEEEE----CCH----------
T ss_pred cchhhhhcccccccCCC--------------------Cccc-ccccccccchhhccccccccc----ccc----------
Confidence 33556666554432110 0000 123578888887753211000 000
Q ss_pred chhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCccc
Q 003013 610 KLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPNC 688 (857)
Q Consensus 610 ~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~ 688 (857)
......+++.+++.. .....++..+..++.|+.+++.++......+. .+..+++|+.++++.+......+..
T Consensus 392 ------~~~~~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~ 464 (635)
T 4g8a_A 392 ------SDFGTISLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 464 (635)
T ss_dssp ------HHHSCSCCCEEECCS-CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred ------chhhhhhhhhhhccc-cccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccc
Confidence 011223556666555 33444556677788899998887754444332 3456778888888887655555666
Q ss_pred CCCCCCccEEeecCCCCCcccC-CC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CC
Q 003013 689 MHNLTSLLNLEIRRCPSVVSFP-ED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FP 762 (857)
Q Consensus 689 ~~~l~~L~~L~l~~c~~l~~l~-~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~ 762 (857)
+..+++|+.|++++|.....++ .. ..+++|++|++++|.. ..+++..+.++++|++|+|++ +.+..+++ .+
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L-~~l~~~~f~~l~~L~~L~Ls~--N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSH--NNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTT--SCCCBCCCGGGTTC
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCcc-CCcChHHHcCCCCCCEEECCC--CcCCCCChhHHhCC
Confidence 7788899999998886555433 22 4568899999988865 444455788889999999987 46666655 46
Q ss_pred CCCCeEecCCCCCCcccCCCC-CCc-cccCceeccCCCC
Q 003013 763 ASLTELWISFMPDLECLSSIG-ENL-TSLKTLRLSYCRK 799 (857)
Q Consensus 763 ~~L~~L~l~~~~~l~~l~~~~-~~l-~~L~~L~l~~c~~ 799 (857)
++|+.|++++ ++++.++... ..+ ++|+.|++++||-
T Consensus 542 ~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 542 NSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 8899999988 5677765444 666 6899999988753
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=6.3e-20 Score=198.83 Aligned_cols=124 Identities=17% Similarity=0.285 Sum_probs=50.1
Q ss_pred CCceEEEccCCCCCCcchhh-hCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeeccccccccccchh-hhcCCCCCc
Q 003013 387 CRLRFLELSYCQGLTKLPQA-LLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSLPEA-WMYNSNSSL 462 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~l~~L 462 (857)
.++++|+++++. +..+|.. +..+++|++|++++| .+..++ .++.+++|++|+++++. +..++.. +.. +++|
T Consensus 45 ~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQN--VPLL 119 (390)
T ss_dssp CCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--CTTC
T ss_pred CCceEEEecCCc-hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcC--CCCC
Confidence 344444444432 2333332 234444444444444 222222 23344444444444443 3333322 222 4455
Q ss_pred cEEEEecCCCCCCCCC--CCCCCCccEEeccccccccccChhhhccCCCCccEEEecC
Q 003013 463 ESLKIRSCNSLVSFPE--IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 463 ~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
++|++++| .+..+|. +..+++|++|+++++. +..++..... .+++|+.|++++
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~ 174 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQ-ATTSLQNLQLSS 174 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTS-SCTTCCEEECCS
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhcc-CCCCCCEEECCC
Confidence 55555443 2233332 2344555555555432 2233222111 145555555554
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=5.7e-19 Score=197.03 Aligned_cols=304 Identities=21% Similarity=0.236 Sum_probs=217.5
Q ss_pred EEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeecccccccccc-chhhhcCCCCCccEEEE
Q 003013 391 FLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSL-PEAWMYNSNSSLESLKI 467 (857)
Q Consensus 391 ~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~l~~L~~L~l 467 (857)
.++.++ ..+..+|..+. .++++|++++| .+..++ .+..+++|++|+++++. +..+ |..+.. +++|++|++
T Consensus 15 ~v~c~~-~~l~~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~--l~~L~~L~L 87 (477)
T 2id5_A 15 AVLCHR-KRFVAVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNN--LFNLRTLGL 87 (477)
T ss_dssp EEECCS-CCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTT--CTTCCEEEC
T ss_pred EEEeCC-CCcCcCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhC--CccCCEEEC
Confidence 455554 34567786553 58999999998 455553 47779999999999986 6666 555555 999999999
Q ss_pred ecCCCCCCCCC--CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCc
Q 003013 468 RSCNSLVSFPE--IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNL 545 (857)
Q Consensus 468 ~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l 545 (857)
++| .+..++. +..+++|++|+++++. +..++...+. .+++|+.|+++++. +..+...
T Consensus 88 ~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~-~l~~L~~L~l~~n~-l~~~~~~----------------- 146 (477)
T 2id5_A 88 RSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQ-DLYNLKSLEVGDND-LVYISHR----------------- 146 (477)
T ss_dssp CSS-CCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEEECCTT-CCEECTT-----------------
T ss_pred CCC-cCCccCcccccCCCCCCEEECCCCc-cccCChhHcc-ccccCCEEECCCCc-cceeChh-----------------
Confidence 886 4566663 4778999999999865 4444333222 27889999988742 2211100
Q ss_pred hhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcce
Q 003013 546 RTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEG 625 (857)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~ 625 (857)
.|. .+++|++|+++++
T Consensus 147 --------------------~~~----~l~~L~~L~l~~n---------------------------------------- 162 (477)
T 2id5_A 147 --------------------AFS----GLNSLEQLTLEKC---------------------------------------- 162 (477)
T ss_dssp --------------------SST----TCTTCCEEEEESC----------------------------------------
T ss_pred --------------------hcc----CCCCCCEEECCCC----------------------------------------
Confidence 011 2257888888876
Q ss_pred eeccCcCCccccC-cCCCCCCCCCeEEeecCCCCcccC-CCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCC
Q 003013 626 IFIYELENLKSLP-AGLHNLHHLQKISIADCPNLESFP-EEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRC 703 (857)
Q Consensus 626 l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 703 (857)
.+..++ ..+..+++|+.|+++++. +..++ ..+..+++|++|++++|..+..+|.......+|++|++++|
T Consensus 163 -------~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 163 -------NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp -------CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred -------cCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence 112222 235678999999999985 44444 35677889999999999988888887777789999999998
Q ss_pred CCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCCCc
Q 003013 704 PSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPDLE 777 (857)
Q Consensus 704 ~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~ 777 (857)
.++.+|.. ..+++|+.|++++|.. ..+....+..+++|++|++++ +.+..+++ .+++|+.|++++ +.++
T Consensus 235 -~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 309 (477)
T 2id5_A 235 -NLTAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVLNVSG-NQLT 309 (477)
T ss_dssp -CCCSCCHHHHTTCTTCCEEECCSSCC-CEECTTSCTTCTTCCEEECCS--SCCSEECTTTBTTCTTCCEEECCS-SCCS
T ss_pred -cccccCHHHhcCccccCeeECCCCcC-CccChhhccccccCCEEECCC--CccceECHHHhcCcccCCEEECCC-CcCc
Confidence 56777642 4568999999999875 444455688899999999997 34444432 568889999988 4778
Q ss_pred ccCCCC-CCccccCceeccCCCC
Q 003013 778 CLSSIG-ENLTSLKTLRLSYCRK 799 (857)
Q Consensus 778 ~l~~~~-~~l~~L~~L~l~~c~~ 799 (857)
.++... ..+++|++|++++|+-
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCE
T ss_pred eeCHhHcCCCcccCEEEccCCCc
Confidence 777554 7788899999988853
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=4e-19 Score=203.34 Aligned_cols=305 Identities=17% Similarity=0.174 Sum_probs=174.1
Q ss_pred CCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCC
Q 003013 330 LSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLT 409 (857)
Q Consensus 330 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~ 409 (857)
+.+++.+++.+. .+..+|..++..+++|++|+++++. +..++.. .+..+ ++|++|+|++|......|..++.
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-----~~~~l-~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-----AFAYA-HTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTT-----TTTTC-TTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCC-CCCCChH-----HhcCC-CCCCEEECCCCcCCCCCHHHHcC
Confidence 455666666653 4566777878888888888888854 4444332 24555 77888888877543334455677
Q ss_pred CCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccch-hhhcCCCCCccEEEEecCCCCCCCCCCCCCCCcc
Q 003013 410 LCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPE-AWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLR 486 (857)
Q Consensus 410 l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 486 (857)
+++|++|++++| .+..+|. ++.+++|++|++++|. +..++. .+.. +++|++|++++|. +..++ ...+++|+
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L~L~~N~-l~~~~-~~~l~~L~ 195 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA--TTSLQNLQLSSNR-LTHVD-LSLIPSLF 195 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTT--CTTCCEEECTTSC-CSBCC-GGGCTTCS
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhc--CCcCcEEECcCCC-CCCcC-hhhhhhhh
Confidence 888888888777 4555553 3567777777777765 455443 3433 7777777776653 33332 34556666
Q ss_pred EEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccc
Q 003013 487 TVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTS 566 (857)
Q Consensus 487 ~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~ 566 (857)
.|+++++ .+..++. .++|+.|+++++. +..++. ..+
T Consensus 196 ~L~l~~n-~l~~l~~------~~~L~~L~ls~n~-l~~~~~-~~~----------------------------------- 231 (597)
T 3oja_B 196 HANVSYN-LLSTLAI------PIAVEELDASHNS-INVVRG-PVN----------------------------------- 231 (597)
T ss_dssp EEECCSS-CCSEEEC------CTTCSEEECCSSC-CCEEEC-SCC-----------------------------------
T ss_pred hhhcccC-ccccccC------CchhheeeccCCc-cccccc-ccC-----------------------------------
Confidence 6666663 2333221 2456666666532 222211 112
Q ss_pred cCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCC
Q 003013 567 FSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHH 646 (857)
Q Consensus 567 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~ 646 (857)
++|+.|+++++. ++.. +.-...++|+.|+++++.--...|..+..+++
T Consensus 232 --------~~L~~L~L~~n~-l~~~-----------------------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 232 --------VELTILKLQHNN-LTDT-----------------------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp --------SCCCEEECCSSC-CCCC-----------------------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred --------CCCCEEECCCCC-CCCC-----------------------hhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 345555555541 1100 00001123333444332222223555666777
Q ss_pred CCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCC
Q 003013 647 LQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDL 726 (857)
Q Consensus 647 L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~ 726 (857)
|+.|++++| .+..+|.....+++|+.|++++|. +..+|..+..+++|++|++++|. +..++. ..+++|+.|++++|
T Consensus 280 L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~L~~L~l~~N 355 (597)
T 3oja_B 280 LERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKL-STHHTLKNLTLSHN 355 (597)
T ss_dssp CCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCC-CTTCCCSEEECCSS
T ss_pred CCEEECCCC-CCCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcCh-hhcCCCCEEEeeCC
Confidence 777777776 455666666666777777777754 55666666667777777777763 444442 33466777777776
Q ss_pred CC
Q 003013 727 KI 728 (857)
Q Consensus 727 ~~ 728 (857)
+.
T Consensus 356 ~~ 357 (597)
T 3oja_B 356 DW 357 (597)
T ss_dssp CE
T ss_pred CC
Confidence 54
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-19 Score=206.21 Aligned_cols=124 Identities=19% Similarity=0.108 Sum_probs=68.1
Q ss_pred CCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEe
Q 003013 645 HHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKV 723 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l 723 (857)
++|+.|++++|. +... ..+..+++|+.|++++|......|..+..+++|+.|++++| .+..+|.. ..+++|+.|++
T Consensus 232 ~~L~~L~L~~n~-l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEEC
T ss_pred CCCCEEECCCCC-CCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEEC
Confidence 566777776663 3322 23445566777777665543444556666677777777666 34444433 23455555555
Q ss_pred cCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCC
Q 003013 724 HDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCR 798 (857)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~ 798 (857)
++|... .++. .+..+++|+.|++++ +.+..++ ...+++|+.|++++|+
T Consensus 309 s~N~l~-~i~~-~~~~l~~L~~L~L~~-----------------------N~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 309 SHNHLL-HVER-NQPQFDRLENLYLDH-----------------------NSIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CSSCCC-CCGG-GHHHHTTCSEEECCS-----------------------SCCCCCC--CCTTCCCSEEECCSSC
T ss_pred CCCCCC-ccCc-ccccCCCCCEEECCC-----------------------CCCCCcC--hhhcCCCCEEEeeCCC
Confidence 555432 2221 233444555555544 3454443 3567788888888875
No 41
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.7e-18 Score=181.79 Aligned_cols=124 Identities=28% Similarity=0.428 Sum_probs=76.1
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCC-CCCCCCcceeeccccccccccchhhhcCCCCCccEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPE-VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESL 465 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 465 (857)
.+++.|+|+++. +..+|..+..+++|++|++++|. +..+|. ++.+++|++|++++|. +..+|..+.. +++|++|
T Consensus 81 ~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~--l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIAS--LNRLREL 155 (328)
T ss_dssp TTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGG--CTTCCEE
T ss_pred cceeEEEccCCC-chhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhc--CcCCCEE
Confidence 556666666643 45677767777777777777763 335553 5667777777777765 6677777665 7788888
Q ss_pred EEecCCCCCCCCCC-C---------CCCCccEEeccccccccccChhhhccCCCCccEEEecC
Q 003013 466 KIRSCNSLVSFPEI-A---------LPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 466 ~l~~~~~~~~~~~~-~---------~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
++++|.....+|.. . .+++|++|+++++ .+..+|..+.. +++|+.|++++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~--l~~L~~L~L~~ 215 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIAN--LQNLKSLKIRN 215 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGG--CTTCCEEEEES
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcC--CCCCCEEEccC
Confidence 88777666666532 1 2455555555553 33345544332 45555555554
No 42
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=3.4e-17 Score=185.02 Aligned_cols=110 Identities=35% Similarity=0.477 Sum_probs=59.8
Q ss_pred ceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEe
Q 003013 389 LRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIR 468 (857)
Q Consensus 389 L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~ 468 (857)
++.|+++++ .+..+|..+. ++|++|++++| .+..+|. .+++|++|++++|. ++.+|. . +++|++|+++
T Consensus 42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~---~--l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPA--LPPELRTLEVSGNQ-LTSLPV---L--PPGLLELSIF 109 (622)
T ss_dssp CCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCC--CCTTCCEEEECSCC-CSCCCC---C--CTTCCEEEEC
T ss_pred CcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCCCc-CCcCCC---C--CCCCCEEECc
Confidence 445555543 2345554443 56666666665 3445554 45666666666655 555555 1 6667777776
Q ss_pred cCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCC
Q 003013 469 SCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 469 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
+| .+..+|. .+++|+.|+++++ .+..+|.. +++|++|++++|
T Consensus 110 ~N-~l~~l~~--~l~~L~~L~L~~N-~l~~lp~~-----l~~L~~L~Ls~N 151 (622)
T 3g06_A 110 SN-PLTHLPA--LPSGLCKLWIFGN-QLTSLPVL-----PPGLQELSVSDN 151 (622)
T ss_dssp SC-CCCCCCC--CCTTCCEEECCSS-CCSCCCCC-----CTTCCEEECCSS
T ss_pred CC-cCCCCCC--CCCCcCEEECCCC-CCCcCCCC-----CCCCCEEECcCC
Confidence 64 3444444 4556666666653 34444432 255666666553
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5.1e-17 Score=171.50 Aligned_cols=279 Identities=15% Similarity=0.227 Sum_probs=164.7
Q ss_pred CCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcch-hhhCCCCCCcEEeEcCCCCCCcC-C-CCCCC
Q 003013 357 SLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLP-QALLTLCSLTDMKILGCASLVSF-P-EVALP 433 (857)
Q Consensus 357 ~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~-~-~~~~l 433 (857)
+++.++++++ .+..+|.. +|+++++|++++|. +..++ ..+..+++|++|++++|. +..+ | .++.+
T Consensus 32 ~l~~l~~~~~-~l~~lp~~---------~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l 99 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD---------LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPL 99 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS---------CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTC
T ss_pred CCeEEEecCC-CccccCcc---------CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCC
Confidence 4566666653 24444322 33667777777764 34443 356777777777777763 3333 3 35556
Q ss_pred CCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC--CCCCCCccEEecccccccc--ccChhhhccCCC
Q 003013 434 SQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE--IALPSQLRTVRIQECNALK--SLPEAWMHNSNS 509 (857)
Q Consensus 434 ~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~--~lp~~~~~~~l~ 509 (857)
++|++|+++++. ++.+|..+ .++|++|++++|. +..++. +..+++|+.|+++++..-. ..+..+.. ++
T Consensus 100 ~~L~~L~Ls~n~-l~~l~~~~----~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--l~ 171 (330)
T 1xku_A 100 VKLERLYLSKNQ-LKELPEKM----PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG--MK 171 (330)
T ss_dssp TTCCEEECCSSC-CSBCCSSC----CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG--CT
T ss_pred CCCCEEECCCCc-CCccChhh----cccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccC--CC
Confidence 677777777655 55665543 3566666666543 333332 3555666666666543211 12222222 45
Q ss_pred CccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCcc
Q 003013 510 SLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLA 589 (857)
Q Consensus 510 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 589 (857)
+|+.|+++++. ++. +|.. .+++|++|+++++
T Consensus 172 ~L~~L~l~~n~-l~~------------------------------------------l~~~--~~~~L~~L~l~~n---- 202 (330)
T 1xku_A 172 KLSYIRIADTN-ITT------------------------------------------IPQG--LPPSLTELHLDGN---- 202 (330)
T ss_dssp TCCEEECCSSC-CCS------------------------------------------CCSS--CCTTCSEEECTTS----
T ss_pred CcCEEECCCCc-ccc------------------------------------------CCcc--ccccCCEEECCCC----
Confidence 66666665532 111 1110 1245666666654
Q ss_pred ccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCcccc-CcCCCCCCCCCeEEeecCCCCcccCC-CCCC
Q 003013 590 FLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSL-PAGLHNLHHLQKISIADCPNLESFPE-EGLP 667 (857)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~ 667 (857)
.+..+ +..+..+++|++|++++|. +..++. .+..
T Consensus 203 -------------------------------------------~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~ 238 (330)
T 1xku_A 203 -------------------------------------------KITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238 (330)
T ss_dssp -------------------------------------------CCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGG
T ss_pred -------------------------------------------cCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccC
Confidence 12222 3456778889999998874 555543 5566
Q ss_pred CCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCC--------CCCCCeEEecCCCCcc-cccccccC
Q 003013 668 STKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGF--------PTNLKSLKVHDLKISK-ALLEWGSN 738 (857)
Q Consensus 668 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~l~~~~~~~-~~~~~~~~ 738 (857)
+++|++|++++|. +..+|.++..+++|++|++++| .++.++...+ .+.|+.|++.+|+... .+.+..+.
T Consensus 239 l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 239 TPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp STTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 7899999999864 6788888888999999999988 4666655422 3677888888887643 33444667
Q ss_pred CCCCccEeEEcC
Q 003013 739 RFTSLRKLEIWG 750 (857)
Q Consensus 739 ~l~~L~~L~l~~ 750 (857)
.+.+|+.+++++
T Consensus 317 ~~~~l~~l~L~~ 328 (330)
T 1xku_A 317 CVYVRAAVQLGN 328 (330)
T ss_dssp TCCCGGGEEC--
T ss_pred cccceeEEEecc
Confidence 777788887776
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.7e-17 Score=175.30 Aligned_cols=109 Identities=10% Similarity=0.127 Sum_probs=76.8
Q ss_pred cCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCC---
Q 003013 639 AGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGF--- 714 (857)
Q Consensus 639 ~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--- 714 (857)
..+..+++|++|++++| .+..++. .+..+++|++|++++|. ++.+|..+..+++|++|++++| .++.++...+
T Consensus 211 ~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV 287 (332)
T ss_dssp TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS
T ss_pred HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCC-CCCccChhHcccc
Confidence 45677888999999887 4444443 45667889999998864 6688888888899999999888 4666654321
Q ss_pred -----CCCCCeEEecCCCCcc-cccccccCCCCCccEeEEcC
Q 003013 715 -----PTNLKSLKVHDLKISK-ALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 715 -----~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~ 750 (857)
.++|+.|++.+|+... .+.+..+..+++|+.+++++
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 3567888888887542 33444567777788777776
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=9.9e-18 Score=175.93 Aligned_cols=228 Identities=23% Similarity=0.336 Sum_probs=131.1
Q ss_pred CCCCcEEeEcCCCCCCcCCC-CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC-CCCCCCCccE
Q 003013 410 LCSLTDMKILGCASLVSFPE-VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP-EIALPSQLRT 487 (857)
Q Consensus 410 l~~L~~L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~ 487 (857)
..+++.|+++++ .+..+|. ++.+++|++|+++++. +..+|..+.. +++|++|++++|. +..+| .+..+++|++
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~--l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQ--FAGLETLTLARNP-LRALPASIASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGG--GTTCSEEEEESCC-CCCCCGGGGGCTTCCE
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCC-ccchhHHHhc--cCCCCEEECCCCc-cccCcHHHhcCcCCCE
Confidence 467788888876 4445553 5667777777777765 5577766655 7777777777653 33444 2345555555
Q ss_pred EeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCcccc
Q 003013 488 VRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSF 567 (857)
Q Consensus 488 L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 567 (857)
|++++|..+..+|..+.. ..+.+ .+
T Consensus 155 L~L~~n~~~~~~p~~~~~-------------------------------~~~~~------------------------~~ 179 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAS-------------------------------TDASG------------------------EH 179 (328)
T ss_dssp EEEEEETTCCCCCSCSEE-------------------------------EC-CC------------------------CE
T ss_pred EECCCCCCccccChhHhh-------------------------------ccchh------------------------hh
Confidence 555555544444433221 10000 00
Q ss_pred CCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCC
Q 003013 568 SSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHL 647 (857)
Q Consensus 568 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L 647 (857)
. .+++|++|+++++ .+..+|..+..+++|
T Consensus 180 ~----~l~~L~~L~L~~n-----------------------------------------------~l~~lp~~l~~l~~L 208 (328)
T 4fcg_A 180 Q----GLVNLQSLRLEWT-----------------------------------------------GIRSLPASIANLQNL 208 (328)
T ss_dssp E----ESTTCCEEEEEEE-----------------------------------------------CCCCCCGGGGGCTTC
T ss_pred c----cCCCCCEEECcCC-----------------------------------------------CcCcchHhhcCCCCC
Confidence 0 1135566666553 222444455556666
Q ss_pred CeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEecCC
Q 003013 648 QKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDL 726 (857)
Q Consensus 648 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~ 726 (857)
++|++++| .+..+|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|.. ..+++|+.|++++|
T Consensus 209 ~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 209 KSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred CEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 66666665 34455555555666666666666666666666666666666666666666555543 34456666666666
Q ss_pred CCcccccccccCCCCCccEeEEcC
Q 003013 727 KISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 727 ~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
.....++. .+.++++|+.+.+..
T Consensus 288 ~~~~~iP~-~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 288 VNLSRLPS-LIAQLPANCIILVPP 310 (328)
T ss_dssp TTCCCCCG-GGGGSCTTCEEECCG
T ss_pred CchhhccH-HHhhccCceEEeCCH
Confidence 66555544 566666666666654
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=6.1e-17 Score=170.95 Aligned_cols=122 Identities=18% Similarity=0.297 Sum_probs=67.0
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeecccccccccc-chhhhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSL-PEAWMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~l~~L~ 463 (857)
.+++.++++++ .+..+|..+ .++|++|++++|. +..++ .+..+++|++|+++++. ++.+ |..+.. +++|+
T Consensus 33 c~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L~ 105 (332)
T 2ft3_A 33 CHLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSP--LRKLQ 105 (332)
T ss_dssp EETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTT--CTTCC
T ss_pred ccCCEEECCCC-CccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhC--cCCCC
Confidence 34566666654 345555544 2466666666653 33332 25556666666666655 4444 344433 67777
Q ss_pred EEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCC
Q 003013 464 SLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 464 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
+|++++| .+..+|.... ++|++|+++++ .+..+|...+. .+++|+.|+++++
T Consensus 106 ~L~L~~n-~l~~l~~~~~-~~L~~L~l~~n-~i~~~~~~~~~-~l~~L~~L~l~~n 157 (332)
T 2ft3_A 106 KLYISKN-HLVEIPPNLP-SSLVELRIHDN-RIRKVPKGVFS-GLRNMNCIEMGGN 157 (332)
T ss_dssp EEECCSS-CCCSCCSSCC-TTCCEEECCSS-CCCCCCSGGGS-SCSSCCEEECCSC
T ss_pred EEECCCC-cCCccCcccc-ccCCEEECCCC-ccCccCHhHhC-CCccCCEEECCCC
Confidence 7777664 3444443222 66777777663 34455544322 2566777776663
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=2e-16 Score=178.64 Aligned_cols=257 Identities=30% Similarity=0.374 Sum_probs=186.2
Q ss_pred CCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEEec
Q 003013 411 CSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTVRI 490 (857)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 490 (857)
.+++.|+++++ .+..+|... .++|++|++++|. ++.+|. . +++|++|++++|. +..+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l-~~~L~~L~L~~N~-l~~lp~---~--l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCL-PAHITTLVIPDNN-LTSLPA---L--PPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCC-CTTCSEEEECSCC-CSCCCC---C--CTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred CCCcEEEecCC-CcCccChhh-CCCCcEEEecCCC-CCCCCC---c--CCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence 35888999887 566776522 3788889888876 777777 2 7888888888864 566665 6677888888
Q ss_pred cccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCC
Q 003013 491 QECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSE 570 (857)
Q Consensus 491 ~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 570 (857)
+++ .+..+|. .+++|+.|+++++ .++. +|.
T Consensus 109 s~N-~l~~l~~-----~l~~L~~L~L~~N-~l~~------------------------------------------lp~- 138 (622)
T 3g06_A 109 FSN-PLTHLPA-----LPSGLCKLWIFGN-QLTS------------------------------------------LPV- 138 (622)
T ss_dssp CSC-CCCCCCC-----CCTTCCEEECCSS-CCSC------------------------------------------CCC-
T ss_pred cCC-cCCCCCC-----CCCCcCEEECCCC-CCCc------------------------------------------CCC-
Confidence 774 4555655 2466777777664 2221 111
Q ss_pred CCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCCCCCCeE
Q 003013 571 NDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNLHHLQKI 650 (857)
Q Consensus 571 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L 650 (857)
.+++|++|++++| .+..+|. .+++|+.|
T Consensus 139 --~l~~L~~L~Ls~N-----------------------------------------------~l~~l~~---~~~~L~~L 166 (622)
T 3g06_A 139 --LPPGLQELSVSDN-----------------------------------------------QLASLPA---LPSELCKL 166 (622)
T ss_dssp --CCTTCCEEECCSS-----------------------------------------------CCSCCCC---CCTTCCEE
T ss_pred --CCCCCCEEECcCC-----------------------------------------------cCCCcCC---ccCCCCEE
Confidence 1246777777765 2223332 24678999
Q ss_pred EeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcc
Q 003013 651 SIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISK 730 (857)
Q Consensus 651 ~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~ 730 (857)
++++| .+..+| ..+++|+.|++++|. ++.+|. .+++|+.|++.+| .+..+|. .+++|+.|++++|...
T Consensus 167 ~L~~N-~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~---~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~L~- 234 (622)
T 3g06_A 167 WAYNN-QLTSLP---MLPSGLQELSVSDNQ-LASLPT---LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLT- 234 (622)
T ss_dssp ECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSCCS-
T ss_pred ECCCC-CCCCCc---ccCCCCcEEECCCCC-CCCCCC---ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCccC-
Confidence 99987 566777 345799999999865 666765 3589999999988 5677775 4689999999998653
Q ss_pred cccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCC
Q 003013 731 ALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 731 ~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 799 (857)
.++ ..+++|++|++++ +.+..+|..+++|+.|++++ +.++.+|.....+++|+.|++++|+.
T Consensus 235 ~lp----~~l~~L~~L~Ls~--N~L~~lp~~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 235 SLP----VLPSELKELMVSG--NRLTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCC----CCCTTCCEEECCS--SCCSCCCCCCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cCC----CCCCcCcEEECCC--CCCCcCCcccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCCC
Confidence 333 4568999999997 47788888889999999999 47888887778899999999999964
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=2e-19 Score=207.11 Aligned_cols=225 Identities=16% Similarity=0.154 Sum_probs=133.1
Q ss_pred hccCCCCccEEeecCccccccc--------CC---------CCCCCceEEecCCcccceeehhhhhhcCCC-CCeEeccC
Q 003013 304 TIQCLPALSKLLIHGCKRVVFS--------GP---------MDLSSLKSVDLVDIANEVVLAGLFEQDIIS-LNRLQIKG 365 (857)
Q Consensus 304 ~~~~l~~l~~l~l~~~~~~~~~--------~~---------~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~ 365 (857)
.+..+++++.|++.+|...... .+ ..+++|+.|+++++.-.......+...++. |++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 3455666777777666543211 00 146778888887653111122222222334 88888888
Q ss_pred CCCcccccccccccCCCCCCCCCceEEEccCCCCCCc----chhhhCCCCCCcEEeEcCCCCC----CcCCC-CCCCCCc
Q 003013 366 CPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTK----LPQALLTLCSLTDMKILGCASL----VSFPE-VALPSQL 436 (857)
Q Consensus 366 ~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~l~~~~~l----~~~~~-~~~l~~L 436 (857)
|..+....-. .....+ ++|++|+|++|..... ++.....+++|++|+++++... ..++. +..+++|
T Consensus 148 ~~~~~~~~l~----~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 148 CSGFTTDGLL----SIVTHC-RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp CEEEEHHHHH----HHHHHC-TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred CCCcCHHHHH----HHHhhC-CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 7643211000 001133 7889999988853222 4555667889999999887432 12222 3457889
Q ss_pred ceeeccccccccccchhhhcCCCCCccEEEEecCCCCCC----CCCCCCCCCccEEeccccccccccChhhhccCCCCcc
Q 003013 437 RTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVS----FPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLE 512 (857)
Q Consensus 437 ~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~ 512 (857)
++|++++|. +..++..+.. +++|++|+++.+..... ...+..+++|+.|.++++ ....+|..+.. +++|+
T Consensus 223 ~~L~L~~~~-~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~--~~~L~ 296 (592)
T 3ogk_B 223 VSVKVGDFE-ILELVGFFKA--AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPF--AAQIR 296 (592)
T ss_dssp CEEECSSCB-GGGGHHHHHH--CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGG--GGGCC
T ss_pred cEEeccCcc-HHHHHHHHhh--hhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhh--cCCCc
Confidence 999999876 6777877766 89999999976433211 123467788888888874 33455554433 57899
Q ss_pred EEEecCCCCCccccc---ccCCCcccEEeec
Q 003013 513 SLEIRSCDSLTYIAR---IQLPPSLKRLIVS 540 (857)
Q Consensus 513 ~L~l~~c~~l~~l~~---~~~~~~L~~L~l~ 540 (857)
+|++++|. ++.... ....++|+.|.+.
T Consensus 297 ~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 297 KLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred EEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 99998876 432211 2344556666554
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=4.3e-16 Score=164.34 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=76.4
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeecccccccccc-chhhhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSL-PEAWMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~l~~L~ 463 (857)
.+++.++++++ .+..+|..+. ++|++|++++| .+..++ .++.+++|++|+++++. +..+ |..+.. +++|+
T Consensus 31 c~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP--LVKLE 103 (330)
T ss_dssp EETTEEECTTS-CCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT--CTTCC
T ss_pred CCCeEEEecCC-CccccCccCC--CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcC--CCCCC
Confidence 56778888775 3566776443 57888888887 455554 36667888888888776 5555 555544 77888
Q ss_pred EEEEecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCC
Q 003013 464 SLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 464 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
+|++++|. +..+|... .++|++|+++++ .+..++...... +++|+.|+++++
T Consensus 104 ~L~Ls~n~-l~~l~~~~-~~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n 155 (330)
T 1xku_A 104 RLYLSKNQ-LKELPEKM-PKTLQELRVHEN-EITKVRKSVFNG-LNQMIVVELGTN 155 (330)
T ss_dssp EEECCSSC-CSBCCSSC-CTTCCEEECCSS-CCCBBCHHHHTT-CTTCCEEECCSS
T ss_pred EEECCCCc-CCccChhh-cccccEEECCCC-cccccCHhHhcC-CccccEEECCCC
Confidence 88887753 44555322 267777777764 344555443322 566666666653
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=1.3e-17 Score=174.07 Aligned_cols=248 Identities=19% Similarity=0.167 Sum_probs=146.2
Q ss_pred CCceEEEccCCCCCC--cchhhhCCCCCCcEEeEcC-CCCCCcCC-CCCCCCCcceeeccccccccccchhhhcCCCCCc
Q 003013 387 CRLRFLELSYCQGLT--KLPQALLTLCSLTDMKILG-CASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSL 462 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~-~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 462 (857)
.+++.|+|+++.... .+|..+..+++|++|++++ +.....+| .++.+++|++|+++++.....+|..+.. +++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--IKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG--CTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC--CCCC
Confidence 457777777765544 5777777777777777774 43333444 3566777777777776632366666655 7777
Q ss_pred cEEEEecCCCCCCCC-CCCCCCCccEEeccccccccccChhhhccCCC-CccEEEecCCCCCcccccccCCCcccEEeec
Q 003013 463 ESLKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKSLPEAWMHNSNS-SLESLEIRSCDSLTYIARIQLPPSLKRLIVS 540 (857)
Q Consensus 463 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~-~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 540 (857)
++|++++|.....+| .+..+++|++|+++++.....+|..+.. ++ +|+.|+++++.-... .+..+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--l~~~L~~L~L~~N~l~~~-----~~~~~------ 194 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS--FSKLFTSMTISRNRLTGK-----IPPTF------ 194 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC--CCTTCCEEECCSSEEEEE-----CCGGG------
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh--hhhcCcEEECcCCeeecc-----CChHH------
Confidence 777777654333444 3456667777777765433355655544 34 666666665321110 00000
Q ss_pred cCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCC
Q 003013 541 DCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDN 620 (857)
Q Consensus 541 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 620 (857)
. .+ +|+.|+++++
T Consensus 195 ---------------------------~----~l-~L~~L~Ls~N----------------------------------- 207 (313)
T 1ogq_A 195 ---------------------------A----NL-NLAFVDLSRN----------------------------------- 207 (313)
T ss_dssp ---------------------------G----GC-CCSEEECCSS-----------------------------------
T ss_pred ---------------------------h----CC-cccEEECcCC-----------------------------------
Confidence 0 01 2555555554
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
.--...|..+..+++|+.|++++|.....++ .+..+++|++|++++|.....+|..+..+++|++|++
T Consensus 208 -----------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 208 -----------MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp -----------EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred -----------cccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 1111234455667777778777764333333 3555677788888776654467777777778888888
Q ss_pred cCCCCCcccCCCCCCCCCCeEEecCCCC
Q 003013 701 RRCPSVVSFPEDGFPTNLKSLKVHDLKI 728 (857)
Q Consensus 701 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~ 728 (857)
++|.....+|....+++|+.+++.+|+.
T Consensus 276 s~N~l~~~ip~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 276 SFNNLCGEIPQGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred cCCcccccCCCCccccccChHHhcCCCC
Confidence 7775444666655556677777776653
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=3.1e-17 Score=171.10 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=59.6
Q ss_pred CCCcEEeEcCCCCCC--cCC-CCCCCCCcceeeccc-cccccccchhhhcCCCCCccEEEEecCCCCCCCCC-CCCCCCc
Q 003013 411 CSLTDMKILGCASLV--SFP-EVALPSQLRTVRIQE-CNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE-IALPSQL 485 (857)
Q Consensus 411 ~~L~~L~l~~~~~l~--~~~-~~~~l~~L~~L~l~~-~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L 485 (857)
.+++.|+++++.... .+| .++.+++|++|++++ +.....+|..+.. +++|++|++++|.....+|. +..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc--CCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 467788888774443 344 356677777777774 4433356666655 77777777776543324442 4555666
Q ss_pred cEEeccccccccccChhhhccCCCCccEEEecC
Q 003013 486 RTVRIQECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 486 ~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
++|+++++.....+|..+.. +++|++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~L~~ 158 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISS--LPNLVGITFDG 158 (313)
T ss_dssp CEEECCSSEEESCCCGGGGG--CTTCCEEECCS
T ss_pred CEEeCCCCccCCcCChHHhc--CCCCCeEECcC
Confidence 66666664332244444433 45555555554
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=4.2e-18 Score=195.99 Aligned_cols=242 Identities=13% Similarity=0.061 Sum_probs=120.9
Q ss_pred ccccccceeeccccchhh--cCCchhcccccchhcccccchhhhccCCCCccEEeecCccccc--ccCCCC-CCC-ceEE
Q 003013 263 EVFPKLRRLSLHRCDKLQ--GTLPKRLLLLDTLYITSCDQLLMTIQCLPALSKLLIHGCKRVV--FSGPMD-LSS-LKSV 336 (857)
Q Consensus 263 ~~~~~L~~l~~~~c~~l~--~~lp~~l~~L~~l~~~~c~~l~~~~~~l~~l~~l~l~~~~~~~--~~~~~~-l~~-L~~l 336 (857)
..+++++.|.++.|..+. +.+|....... ...++.....+++|+.|++++|.... ...+.. ++. |+.|
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYV------TPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBC------HHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccc------hHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 457788888888776542 22332111000 01122233466777777777763111 111111 333 7777
Q ss_pred ecCCcccceee-hhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCC----CcchhhhCCCC
Q 003013 337 DLVDIANEVVL-AGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGL----TKLPQALLTLC 411 (857)
Q Consensus 337 ~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l----~~lp~~~~~l~ 411 (857)
++.++..+... ...+...+++|++|++++|. +........ ......+ ++|++|+++++..- ..++..+..++
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l-~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEKDGKWL-HELAQHN-TSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECCCSHHH-HHHHHHC-CCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCcchhHH-HHHHhcC-CCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 77766532211 12223467777788777764 211100000 0001122 67777777765432 23455556677
Q ss_pred CCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccc---cccchhhhcCCCCCccEEEEecCCCCCCCCC-CCCCCCcc
Q 003013 412 SLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNAL---KSLPEAWMYNSNSSLESLKIRSCNSLVSFPE-IALPSQLR 486 (857)
Q Consensus 412 ~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l---~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~ 486 (857)
+|++|++++|. +..++ .+..+++|++|+++.+... ...+..+.. +++|+.|+++++ ....++. ...+++|+
T Consensus 221 ~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~-~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 221 SLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF--PRKLCRLGLSYM-GPNEMPILFPFAAQIR 296 (592)
T ss_dssp TCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC--CTTCCEEEETTC-CTTTGGGGGGGGGGCC
T ss_pred CCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc--cccccccCcccc-chhHHHHHHhhcCCCc
Confidence 77777777763 33333 2445677777777653322 112222222 677777777653 2233333 24567777
Q ss_pred EEeccccccccccChhhhccCCCCccEEEecC
Q 003013 487 TVRIQECNALKSLPEAWMHNSNSSLESLEIRS 518 (857)
Q Consensus 487 ~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~ 518 (857)
+|++++|. +...........+++|+.|++.+
T Consensus 297 ~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 297 KLDLLYAL-LETEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp EEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG
T ss_pred EEecCCCc-CCHHHHHHHHHhCcCCCEEeccC
Confidence 77777765 32221111123367777777763
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.1e-15 Score=162.77 Aligned_cols=130 Identities=19% Similarity=0.229 Sum_probs=80.1
Q ss_pred CCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeeccccccccccchhhhcCCCCCc
Q 003013 385 LPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSL 462 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 462 (857)
+|.++++|+|++|......+..+..+++|++|+|++| .+..++ .+..+++|++|+++++. ++.++.... ..+++|
T Consensus 62 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 138 (440)
T 3zyj_A 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF-VYLSKL 138 (440)
T ss_dssp CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS-CSCSSC
T ss_pred CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHh-hccccC
Confidence 3467777888776543333466777778888888776 344443 35567777777777765 666665322 236777
Q ss_pred cEEEEecCCCCCCCCC--CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCC
Q 003013 463 ESLKIRSCNSLVSFPE--IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 463 ~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
++|++++|. +..++. +..+++|+.|+++++..+..++...+.. +++|+.|+++++
T Consensus 139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n 195 (440)
T 3zyj_A 139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMC 195 (440)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTS
T ss_pred ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCC
Confidence 777777653 444442 4566677777777666666666543332 566666666664
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=5e-15 Score=163.42 Aligned_cols=223 Identities=20% Similarity=0.259 Sum_probs=140.9
Q ss_pred CCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeeccccccccccchhhhcCCCCCc
Q 003013 385 LPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSL 462 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L 462 (857)
+|+++++|+|++|......|..+..+++|++|++++| .+..++ .+..+++|++|+++++. ++.++.... ..+++|
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 149 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAF-EYLSKL 149 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTS-SSCTTC
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCc-CCccChhhh-cccCCC
Confidence 4578888888887544444677888888888888887 454443 35668888888888876 677766532 237888
Q ss_pred cEEEEecCCCCCCCCC--CCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeec
Q 003013 463 ESLKIRSCNSLVSFPE--IALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVS 540 (857)
Q Consensus 463 ~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~ 540 (857)
++|++++|. +..++. +..+++|+.|++++|..+..++...+.. +++|+.|+++++ .++.++.+.
T Consensus 150 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n-~l~~~~~~~----------- 215 (452)
T 3zyi_A 150 RELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMC-NIKDMPNLT----------- 215 (452)
T ss_dssp CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTS-CCSSCCCCT-----------
T ss_pred CEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCC-ccccccccc-----------
Confidence 888888764 455553 4667788888888877777776654332 677777777764 222111100
Q ss_pred cCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCC
Q 003013 541 DCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDN 620 (857)
Q Consensus 541 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 620 (857)
.+++|+.|+++++
T Consensus 216 --------------------------------~l~~L~~L~Ls~N----------------------------------- 228 (452)
T 3zyi_A 216 --------------------------------PLVGLEELEMSGN----------------------------------- 228 (452)
T ss_dssp --------------------------------TCTTCCEEECTTS-----------------------------------
T ss_pred --------------------------------ccccccEEECcCC-----------------------------------
Confidence 1245666666654
Q ss_pred CCcceeeccCcCCcccc-CcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc-cCCCCCCccEE
Q 003013 621 TSLEGIFIYELENLKSL-PAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN-CMHNLTSLLNL 698 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L 698 (857)
.+..+ |..+..+++|+.|++++|......+..+..+++|+.|+++++. ++.+|. .+..+++|+.|
T Consensus 229 ------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 229 ------------HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVEL 295 (452)
T ss_dssp ------------CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEE
T ss_pred ------------cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEE
Confidence 11112 3445667777777777764333334445566777777777753 445543 44567777777
Q ss_pred eecCCC
Q 003013 699 EIRRCP 704 (857)
Q Consensus 699 ~l~~c~ 704 (857)
++.+|+
T Consensus 296 ~L~~Np 301 (452)
T 3zyi_A 296 HLHHNP 301 (452)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 777654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.3e-15 Score=162.60 Aligned_cols=132 Identities=17% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCCCCCCCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCCC
Q 003013 641 LHNLHHLQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTN 717 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~ 717 (857)
+..+++|++|++++|..+..++.. +..+++|++|++++|. ++.+|. +..+++|++|++++| .+..++.. ..+++
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 232 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMH 232 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCC-ccCccChhhhccCcc
Confidence 445566666666666555555542 3445566666666543 444442 455555555555555 23333221 22344
Q ss_pred CCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCccccCceeccC
Q 003013 718 LKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSY 796 (857)
Q Consensus 718 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~ 796 (857)
|+.|++++|... .+....+..+ ++|+.|++++ ++++.++... ..+++|+.|++++
T Consensus 233 L~~L~L~~n~l~-~~~~~~~~~l----------------------~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 233 LQKLWMIQSQIQ-VIERNAFDNL----------------------QSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp CCEEECTTCCCC-EECTTSSTTC----------------------TTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEECCCCcee-EEChhhhcCC----------------------CCCCEEECCC-CCCCccChhHhccccCCCEEEcCC
Confidence 455555444332 1222233334 4455555554 5677777555 7788999999988
Q ss_pred CCC
Q 003013 797 CRK 799 (857)
Q Consensus 797 c~~ 799 (857)
||-
T Consensus 289 Np~ 291 (440)
T 3zyj_A 289 NPW 291 (440)
T ss_dssp SCE
T ss_pred CCc
Confidence 863
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=8.2e-15 Score=161.71 Aligned_cols=149 Identities=21% Similarity=0.232 Sum_probs=75.6
Q ss_pred CCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCCCCCCCCCeE
Q 003013 644 LHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPEDGFPTNLKSL 721 (857)
Q Consensus 644 l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L 721 (857)
+++|++|++++| .+..++. .+..+++|++|++++|+.++.++. .+..+++|++|++++| .+..+|....+++|+.|
T Consensus 146 l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 223 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEEL 223 (452)
T ss_dssp CTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEE
T ss_pred cCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEE
Confidence 444444444443 2233332 233344444444444444444433 2444555555555554 33444443444555555
Q ss_pred EecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCCCcccCCCC-CCccccCceeccC
Q 003013 722 KVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSY 796 (857)
Q Consensus 722 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~ 796 (857)
++++|.... +.+..+..+++|++|++++ +.+..+++ .+++|+.|++++ ++++.++... ..+++|+.|++++
T Consensus 224 ~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 224 EMSGNHFPE-IRPGSFHGLSSLKKLWVMN--SQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ECTTSCCSE-ECGGGGTTCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ECcCCcCcc-cCcccccCccCCCEEEeCC--CcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccC
Confidence 555554322 2223455566666666655 22222211 345566666665 4677777555 6788889999888
Q ss_pred CC
Q 003013 797 CR 798 (857)
Q Consensus 797 c~ 798 (857)
||
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 57
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.2e-15 Score=152.62 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=157.1
Q ss_pred CCcceeeccCcCCccccCc-CCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcc-cCCCCCCccE
Q 003013 621 TSLEGIFIYELENLKSLPA-GLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPN-CMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~ 697 (857)
..++.|++.+ ..++.++. .+..+++|++|++++|..++.++. .+..+++|++|++++|+.++.++. .+..+++|++
T Consensus 31 ~~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 4788888888 56777765 678899999999999876888876 456788999999998777887774 5778999999
Q ss_pred EeecCCCCCcccCCCCCCCCCC---eEEecCCCCcccccccccCCCCCcc-EeEEcCCCCCCCCCCC---CCCCCCeEec
Q 003013 698 LEIRRCPSVVSFPEDGFPTNLK---SLKVHDLKISKALLEWGSNRFTSLR-KLEIWGPCPDLVSPPP---FPASLTELWI 770 (857)
Q Consensus 698 L~l~~c~~l~~l~~~~~~~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~l~~~~~---~~~~L~~L~l 770 (857)
|++++| .++.+|....+++|+ .|++++|..+..++...+..+++|+ +|++++ +.+..+|. ..++|++|++
T Consensus 110 L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~--n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS--CCCCEECTTTTTTCEEEEEEC
T ss_pred EeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC--CCCcccCHhhcCCCCCCEEEc
Confidence 999998 466677655567787 9999999666777776788999999 999987 35556654 2368999999
Q ss_pred CCCCCCcccCCCC-CCc-cccCceeccCCCCCCCCCCCCccccccceeecCCcch
Q 003013 771 SFMPDLECLSSIG-ENL-TSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCPLI 823 (857)
Q Consensus 771 ~~~~~l~~l~~~~-~~l-~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c~~l 823 (857)
+++..++.++... ..+ ++|+.|++++| .++.+|...+ ++|+.|++.+++.|
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~-~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGL-EHLKELIARNTWTL 239 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTC-TTCSEEECTTC---
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHh-ccCceeeccCccCC
Confidence 9966798887655 778 99999999998 7888887644 68999999988653
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=3.6e-15 Score=155.46 Aligned_cols=89 Identities=21% Similarity=0.289 Sum_probs=52.5
Q ss_pred CcCCCCCCCCCeEEeecCCCCccc-CCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCCCCcccCCC--C
Q 003013 638 PAGLHNLHHLQKISIADCPNLESF-PEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCPSVVSFPED--G 713 (857)
Q Consensus 638 ~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~ 713 (857)
|..+..+++|++|++++|. +..+ +..+..+++|++|+++++. +..++ ..+..+++|++|++++|......+.. .
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred hhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 4445566777777777763 3343 4455566777777777755 33333 35666777777777777433323322 2
Q ss_pred CCCCCCeEEecCCCC
Q 003013 714 FPTNLKSLKVHDLKI 728 (857)
Q Consensus 714 ~~~~L~~L~l~~~~~ 728 (857)
.+++|+.|++++|+.
T Consensus 246 ~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 246 FPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCTTCCEEECTTCCE
T ss_pred hhccCCEEEccCCCe
Confidence 234677777776654
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=4.6e-18 Score=195.76 Aligned_cols=407 Identities=14% Similarity=0.167 Sum_probs=188.4
Q ss_pred hhhhhhcCCCCCeEeccCCCCccccccccccc--------CC-CCCCCCCceEEEccCCCCCCcchhhhC-CCCCCcEEe
Q 003013 348 AGLFEQDIISLNRLQIKGCPRLLSLVTEEEHD--------HQ-QPELPCRLRFLELSYCQGLTKLPQALL-TLCSLTDMK 417 (857)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~--------~~-i~~l~~~L~~L~L~~~~~l~~lp~~~~-~l~~L~~L~ 417 (857)
+...+..+++|+.|+++++..+..+....... .. ...+ ++|++|+|++|......+..+. .+++|++|+
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 33445666677777777765443221100000 00 0112 5677777777653333333343 467777777
Q ss_pred EcCCCCCCc--CCCC-CCCCCcceeeccccccccccchh-hh--cCCCCCccEEEEecCCCCCCCC-----C-CCCCCCc
Q 003013 418 ILGCASLVS--FPEV-ALPSQLRTVRIQECNALKSLPEA-WM--YNSNSSLESLKIRSCNSLVSFP-----E-IALPSQL 485 (857)
Q Consensus 418 l~~~~~l~~--~~~~-~~l~~L~~L~l~~~~~l~~l~~~-~~--~~~l~~L~~L~l~~~~~~~~~~-----~-~~~~~~L 485 (857)
+++|..+.. ++.+ ..+++|++|++++|. +...... +. ...+++|++|++++|. ..+. . ...+++|
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L 213 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNL 213 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTC
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCC
Confidence 777754433 3322 246777777777765 3332111 11 0126677777777664 1111 1 1335777
Q ss_pred cEEeccccccccccChhhhccCCCCccEEEecCCCC-CcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCc
Q 003013 486 RTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDS-LTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSL 564 (857)
Q Consensus 486 ~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~-l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l 564 (857)
++|++++|..+..++..+.. +++|+.|++..|.. +..-. ...+.. .+.+|++|+.+...... . .
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~----~~~l~~-~l~~~~~L~~Ls~~~~~--~------~ 278 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQR--APQLEELGTGGYTAEVRPDV----YSGLSV-ALSGCKELRCLSGFWDA--V------P 278 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHH--CTTCSEEECSBCCCCCCHHH----HHHHHH-HHHTCTTCCEEECCBTC--C------G
T ss_pred cEEecCCCCcHHHHHHHHhc--CCcceEcccccccCccchhh----HHHHHH-HHhcCCCcccccCCccc--c------h
Confidence 77777777655555554443 57777777665532 00000 000000 11222222222100000 0 0
Q ss_pred cccCCCCCCCCCccEEEEeCCCCccccccCCCchhhHHHHHhhcCchhhhhhccCCCCcceeeccCcCCccccCcCCCCC
Q 003013 565 TSFSSENDLPATLEHLEVSSCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERLDNTSLEGIFIYELENLKSLPAGLHNL 644 (857)
Q Consensus 565 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~l~l~~~~~l~~l~~~~~~l 644 (857)
..++.....+++|++|++++|. +.. .........| ++|+.|.+.+|..-..++.....+
T Consensus 279 ~~l~~~~~~~~~L~~L~L~~~~-l~~--------~~l~~~~~~~------------~~L~~L~l~~~~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 279 AYLPAVYSVCSRLTTLNLSYAT-VQS--------YDLVKLLCQC------------PKLQRLWVLDYIEDAGLEVLASTC 337 (594)
T ss_dssp GGGGGGHHHHTTCCEEECTTCC-CCH--------HHHHHHHTTC------------TTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred hhHHHHHHhhCCCCEEEccCCC-CCH--------HHHHHHHhcC------------CCcCEEeCcCccCHHHHHHHHHhC
Confidence 0111100012567777777764 221 1111111122 345555555542111222222346
Q ss_pred CCCCeEEeecC--------CCCcccC--CCCCCCCCcceEeeccccCcccC-cccC-CCCCCccEEeec-----CCCCCc
Q 003013 645 HHLQKISIADC--------PNLESFP--EEGLPSTKLTELSIRECENLKAL-PNCM-HNLTSLLNLEIR-----RCPSVV 707 (857)
Q Consensus 645 ~~L~~L~l~~c--------~~l~~l~--~~~~~~~~L~~L~l~~c~~l~~l-~~~~-~~l~~L~~L~l~-----~c~~l~ 707 (857)
++|++|++.+| ..+.... .....+++|++|.+. |..+... +..+ ..+++|+.|++. +|..++
T Consensus 338 ~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 338 KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 77777777443 2222100 000124677777443 3434321 1122 246777777777 455555
Q ss_pred ccCCC-------CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCC--C---CCCCCCCCeEecCCCCC
Q 003013 708 SFPED-------GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVS--P---PPFPASLTELWISFMPD 775 (857)
Q Consensus 708 ~l~~~-------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~--~---~~~~~~L~~L~l~~~~~ 775 (857)
..|.. ..+++|+.|++++ .............+++|++|++++ |. +.. + ...+++|++|++++|+.
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~-~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAF-AG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEES-CC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccC-CC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 43321 2246777777755 221211111112366777777776 32 211 0 01356777777777654
Q ss_pred CcccC--CCCCCccccCceeccCCCC
Q 003013 776 LECLS--SIGENLTSLKTLRLSYCRK 799 (857)
Q Consensus 776 l~~l~--~~~~~l~~L~~L~l~~c~~ 799 (857)
+... .....+++|+.|++++|+.
T Consensus 494 -~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 494 -GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp -CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred -cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3211 1225577888888888854
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=4.4e-15 Score=158.14 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=82.2
Q ss_pred CCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCccc-CCCCCCccEEeecCCCCCcccCCC-----C
Q 003013 640 GLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNC-MHNLTSLLNLEIRRCPSVVSFPED-----G 713 (857)
Q Consensus 640 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~~~-----~ 713 (857)
.+..+++|++|++++|......|..+..+++|++|+++++. +..+|.. +..+++|++|++++|. +..++.. .
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~ 246 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGE 246 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-ccccccccccccc
Confidence 45567777888888775433345566677788888887755 4555543 2347788888888773 4433322 2
Q ss_pred CCCCCCeEEecCCCCcccc---cccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCcccc
Q 003013 714 FPTNLKSLKVHDLKISKAL---LEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLTSL 789 (857)
Q Consensus 714 ~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L 789 (857)
....++.+++.++...... .+..+..+++|++|++++ ++++.+|... ..+++|
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-----------------------N~l~~i~~~~~~~l~~L 303 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR-----------------------NQLKSVPDGIFDRLTSL 303 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS-----------------------SCCCCCCTTTTTTCTTC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC-----------------------CCCCccCHHHHhcCCCC
Confidence 3455666666666543311 111344555555555555 4667777665 678888
Q ss_pred CceeccCCCC
Q 003013 790 KTLRLSYCRK 799 (857)
Q Consensus 790 ~~L~l~~c~~ 799 (857)
++|++++|+-
T Consensus 304 ~~L~L~~N~~ 313 (353)
T 2z80_A 304 QKIWLHTNPW 313 (353)
T ss_dssp CEEECCSSCB
T ss_pred CEEEeeCCCc
Confidence 8888888853
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=5.2e-17 Score=186.95 Aligned_cols=200 Identities=18% Similarity=0.195 Sum_probs=99.4
Q ss_pred CCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCccc--ccccccccCCCCCCCCCceEEEccCCCCCC----cc
Q 003013 330 LSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLS--LVTEEEHDHQQPELPCRLRFLELSYCQGLT----KL 403 (857)
Q Consensus 330 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~----~l 403 (857)
+++|+.|+++++.-.......+...+++|++|++++|..+.. ++.- ...+ ++|++|++++|.... .+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~------~~~~-~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI------AATC-RNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH------HHHC-TTCCEEECTTCEEECCCGGGG
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH------HHhC-CCCCEEeCcCCccCCcchHHH
Confidence 455666666654321122233333566777777776644332 1100 1123 667777777665211 13
Q ss_pred hhhhCCCCCCcEEeEcCCC-CCC--cCCC-CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCC-----
Q 003013 404 PQALLTLCSLTDMKILGCA-SLV--SFPE-VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLV----- 474 (857)
Q Consensus 404 p~~~~~l~~L~~L~l~~~~-~l~--~~~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~----- 474 (857)
+.....+++|++|++++|. .+. .++. ...+++|++|++++|..+..++..+.. +++|++|++..+..-.
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR--APQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH--CTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc--CCcceEcccccccCccchhhH
Confidence 3333456677777777664 111 0111 123567777777776555556655555 6777777765543200
Q ss_pred -CCC-CCCCCCCccEE-eccccccccccChhhhccCCCCccEEEecCCCCCccccc---ccCCCcccEEeeccC
Q 003013 475 -SFP-EIALPSQLRTV-RIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIAR---IQLPPSLKRLIVSDC 542 (857)
Q Consensus 475 -~~~-~~~~~~~L~~L-~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~l~~~ 542 (857)
.++ .+..+++|+.| .+.+.. ...++..... +++|++|++++|. ++.... ....++|+.|.+.++
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~--~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAV-PAYLPAVYSV--CSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCC-GGGGGGGHHH--HTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHhcCCCcccccCCcccc-hhhHHHHHHh--hCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 001 23455666666 333321 1233332222 4677777777766 442111 124466677766665
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=1.1e-14 Score=154.98 Aligned_cols=174 Identities=21% Similarity=0.283 Sum_probs=105.1
Q ss_pred CceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhh-hCCC
Q 003013 332 SLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQA-LLTL 410 (857)
Q Consensus 332 ~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~-~~~l 410 (857)
+++.|+++++ .+..++...+..+++|+.|+++++ .+..++.. .+..+ ++|++|++++|. +..+|.. +..+
T Consensus 53 ~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l-~~L~~L~Ls~n~-l~~~~~~~~~~l 123 (353)
T 2z80_A 53 AVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEED-----SFSSL-GSLEHLDLSYNY-LSNLSSSWFKPL 123 (353)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTT-----TTTTC-TTCCEEECCSSC-CSSCCHHHHTTC
T ss_pred cCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHh-----hcCCC-CCCCEEECCCCc-CCcCCHhHhCCC
Confidence 5666666653 244555555677777777777775 34443221 24555 677777777764 3445543 6777
Q ss_pred CCCcEEeEcCCCCCCcCCC---CCCCCCcceeeccccccccccch-hhhcCCCCCccEEEEecCCCCCCCC-CCCCCCCc
Q 003013 411 CSLTDMKILGCASLVSFPE---VALPSQLRTVRIQECNALKSLPE-AWMYNSNSSLESLKIRSCNSLVSFP-EIALPSQL 485 (857)
Q Consensus 411 ~~L~~L~l~~~~~l~~~~~---~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L 485 (857)
++|++|++++| .+..+|. +..+++|++|+++++..+..++. .+.. +++|++|++++|......+ .+..+++|
T Consensus 124 ~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 124 SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG--LTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--CCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccC--CCCCCEEECCCCCcCccCHHHHhccccC
Confidence 77777777776 4445543 55677777777777654555543 3333 7777777777764333223 34566777
Q ss_pred cEEeccccccccccChhhhccCCCCccEEEecCC
Q 003013 486 RTVRIQECNALKSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 486 ~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
++|+++++. +..+|..+... +++|+.|+++++
T Consensus 201 ~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~L~~n 232 (353)
T 2z80_A 201 SHLILHMKQ-HILLLEIFVDV-TSSVECLELRDT 232 (353)
T ss_dssp EEEEEECSC-STTHHHHHHHH-TTTEEEEEEESC
T ss_pred CeecCCCCc-cccchhhhhhh-cccccEEECCCC
Confidence 777777743 45555544332 567777777764
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=8.8e-15 Score=152.52 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=61.2
Q ss_pred CCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcc-cCcccCCCCCCccEEeecCCCCCcccCCC--CCCC
Q 003013 640 GLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLK-ALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPT 716 (857)
Q Consensus 640 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~ 716 (857)
.+..+++|++|++++|......+..+..+++|++|+++++.... .+|..+..+++|++|++++| .+..++.. ..++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 199 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCC
Confidence 35567778888888774333344445566777888777765333 35666777777777777777 34444222 2345
Q ss_pred CCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 717 NLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 717 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
+|+.|++++|.... ++...+..+++|++|++++
T Consensus 200 ~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 200 SLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp TCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTT
T ss_pred CCCEEECCCCccCc-cChhhccCcccCCEeECCC
Confidence 56666666554322 2222334444444444444
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=8.3e-16 Score=160.81 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=40.2
Q ss_pred ccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCc-ccCcccCCCCCCccEEeecCCCC
Q 003013 636 SLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENL-KALPNCMHNLTSLLNLEIRRCPS 705 (857)
Q Consensus 636 ~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~l~~L~~L~l~~c~~ 705 (857)
.+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++++.. ..+|.++..+++|+.|++.++..
T Consensus 205 ~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 205 FMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp EECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 34444555666666666665 45556665556666666666665533 34455555666666666664433
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.3e-17 Score=185.30 Aligned_cols=176 Identities=21% Similarity=0.134 Sum_probs=104.3
Q ss_pred CcCCCCCCCCCeEEeecCCCCccc-----CC-CCCCCCCcceEeeccccCccc-----CcccCCCCCCccEEeecCCCCC
Q 003013 638 PAGLHNLHHLQKISIADCPNLESF-----PE-EGLPSTKLTELSIRECENLKA-----LPNCMHNLTSLLNLEIRRCPSV 706 (857)
Q Consensus 638 ~~~~~~l~~L~~L~l~~c~~l~~l-----~~-~~~~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l 706 (857)
+..+..+++|++|++++|. +... .. ....+++|++|++++|. ++. ++..+..+++|++|++++|. +
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i 296 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNE-L 296 (461)
T ss_dssp HHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCC-C
T ss_pred HHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCC-C
Confidence 3344556778888887773 3321 11 12235678888888764 443 55556667888888888773 3
Q ss_pred ccc-----CCC--CCCCCCCeEEecCCCCcccc---cccccCCCCCccEeEEcCCCCCCCCCC---------CCCCCCCe
Q 003013 707 VSF-----PED--GFPTNLKSLKVHDLKISKAL---LEWGSNRFTSLRKLEIWGPCPDLVSPP---------PFPASLTE 767 (857)
Q Consensus 707 ~~l-----~~~--~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~l~~~~---------~~~~~L~~ 767 (857)
... ... ...++|+.|++++|...... ....+..+++|++|++++ + .+.... ...++|++
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n-~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN-N-RLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCS-S-BCHHHHHHHHHHHHTSTTCCCCE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccC-C-ccccccHHHHHHHHcCCCCceEE
Confidence 221 110 12357888888888754321 122355678888888887 3 332211 12568888
Q ss_pred EecCCCCCCc-----ccCCCCCCccccCceeccCCCCCCCCCCC----Cc---cccccceeecCC
Q 003013 768 LWISFMPDLE-----CLSSIGENLTSLKTLRLSYCRKLTYFSKE----GL---PKSLLRLYINHC 820 (857)
Q Consensus 768 L~l~~~~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~ip~~----~l---~~~L~~L~i~~c 820 (857)
|++++| .++ .++.....+++|++|++++|+ +...... .+ ..+|+.|.+.++
T Consensus 375 L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 375 LWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDI 437 (461)
T ss_dssp EECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTC
T ss_pred EECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC-CCHHHHHHHHHHhccCCcchhheeeccc
Confidence 888885 566 456444678999999999984 4322100 01 135777776665
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=8.9e-14 Score=143.13 Aligned_cols=63 Identities=22% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCC
Q 003013 641 LHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCP 704 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 704 (857)
+..+++|++|++++|......+..+..+++|+.|+++++. +..++ ..+..+++|++|++++++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 4456666666666664332334455556666666666653 33333 335566666666666653
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.57 E-value=8.6e-16 Score=160.68 Aligned_cols=252 Identities=13% Similarity=0.176 Sum_probs=141.7
Q ss_pred eehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCC
Q 003013 346 VLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLV 425 (857)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 425 (857)
..+..++..+++|+.|+++++. +..++.. .+..+ ++|++|+|++|.. ..++. +..+++|++|++++| .+.
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~-----~~~~l-~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~Ls~n-~l~ 93 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNP-LSQISAA-----DLAPF-TKLELLNLSSNVL-YETLD-LESLSTLRTLDLNNN-YVQ 93 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSC-CCCCCHH-----HHTTC-TTCCEEECTTSCC-EEEEE-ETTCTTCCEEECCSS-EEE
T ss_pred hhHHHHhccCCCCCEEECcCCc-cCcCCHH-----HhhCC-CcCCEEECCCCcC-Ccchh-hhhcCCCCEEECcCC-ccc
Confidence 3444555556667777777643 4333211 13444 6677777776543 33332 666777777777766 344
Q ss_pred cCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC--CCCCCCCccEEeccccccccccChhh
Q 003013 426 SFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP--EIALPSQLRTVRIQECNALKSLPEAW 503 (857)
Q Consensus 426 ~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~lp~~~ 503 (857)
.++ ..++|++|+++++. +..++.. .+++|++|++++|. +..++ .+..+++|++|+++++. +..++...
T Consensus 94 ~l~---~~~~L~~L~l~~n~-l~~~~~~----~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 163 (317)
T 3o53_A 94 ELL---VGPSIETLHAANNN-ISRVSCS----RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE 163 (317)
T ss_dssp EEE---ECTTCCEEECCSSC-CSEEEEC----CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG
T ss_pred ccc---CCCCcCEEECCCCc-cCCcCcc----ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCC-CCcccHHH
Confidence 333 23667777777655 5544432 25667777776653 33332 23445667777776643 33333222
Q ss_pred hccCCCCccEEEecCCCCCcccccccCCCcccEEeeccCCCchhhcccccccccCCCCCCccccCCCCCCCCCccEEEEe
Q 003013 504 MHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSDCCNLRTLMAEQDICSSSRGCTSLTSFSSENDLPATLEHLEVS 583 (857)
Q Consensus 504 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~L~l~ 583 (857)
....+++|+.|+++++. ++.++....+ ++|++|+++
T Consensus 164 ~~~~l~~L~~L~L~~N~-l~~~~~~~~l-------------------------------------------~~L~~L~Ls 199 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNF-IYDVKGQVVF-------------------------------------------AKLKTLDLS 199 (317)
T ss_dssp GGGGTTTCCEEECTTSC-CCEEECCCCC-------------------------------------------TTCCEEECC
T ss_pred HhhccCcCCEEECCCCc-Cccccccccc-------------------------------------------ccCCEEECC
Confidence 22225667777776642 3333222223 455555555
Q ss_pred CCCCccccccCCCchhhHHHHHhhcCchhhhhhcc-CCCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCC-ccc
Q 003013 584 SCSNLAFLSRNGNLPRALKYLVSLCSKLESLAERL-DNTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNL-ESF 661 (857)
Q Consensus 584 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l 661 (857)
++. ++.++ +.+ ...+|+.|++++ +.+..+|..+..+++|+.|++++|+.. ..+
T Consensus 200 ~N~-l~~l~-----------------------~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 200 SNK-LAFMG-----------------------PEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp SSC-CCEEC-----------------------GGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred CCc-CCcch-----------------------hhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCCccCcCH
Confidence 541 11110 000 113555666655 466678888888999999999998655 355
Q ss_pred CCCCCCCCCcceEeeccccCcccCc
Q 003013 662 PEEGLPSTKLTELSIRECENLKALP 686 (857)
Q Consensus 662 ~~~~~~~~~L~~L~l~~c~~l~~l~ 686 (857)
+.....+++|+.|++.++..++...
T Consensus 255 ~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHhccccceEEECCCchhccCCc
Confidence 5556677899999999877766543
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=6.5e-15 Score=163.19 Aligned_cols=120 Identities=15% Similarity=0.138 Sum_probs=73.0
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 466 (857)
++|++|+|++|......|..+..+++|++|+|++|. +...+.++.+++|++|++++|. +..+|. .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLV------GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEE------CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCC------CCCcCEEE
Confidence 567777777765433445667777777777777763 4333346667777777777765 555553 46777777
Q ss_pred EecCCCCCCCCCCCCCCCccEEeccccccccccCh-hhhccCCCCccEEEecCC
Q 003013 467 IRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPE-AWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 467 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~-~~~~~~l~~L~~L~l~~c 519 (857)
+++|. +..++. ..+++|+.|+++++. +..+++ .+.. +++|+.|+++++
T Consensus 106 L~~N~-l~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~Ls~N 154 (487)
T 3oja_A 106 AANNN-ISRVSC-SRGQGKKNIYLANNK-ITMLRDLDEGC--RSRVQYLDLKLN 154 (487)
T ss_dssp CCSSC-CCCEEE-CCCSSCEEEECCSSC-CCSGGGBCGGG--GSSEEEEECTTS
T ss_pred CcCCc-CCCCCc-cccCCCCEEECCCCC-CCCCCchhhcC--CCCCCEEECCCC
Confidence 77653 333332 245677777777743 333332 3322 567777777764
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=9e-14 Score=138.85 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=53.6
Q ss_pred CCCCCCCeEEeecCCCCcccCCCCCCCCCcc---eEeeccccCcccCcc-cCCCCCCcc-EEeecCCCCCcccCCCC-CC
Q 003013 642 HNLHHLQKISIADCPNLESFPEEGLPSTKLT---ELSIRECENLKALPN-CMHNLTSLL-NLEIRRCPSVVSFPEDG-FP 715 (857)
Q Consensus 642 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~---~L~l~~c~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~l~~~~-~~ 715 (857)
..+++|++|++++| .+..+|. +..+++|+ +|++++++.++.+|. .+..+++|+ +|+++++ .++.+|... ..
T Consensus 102 ~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT
T ss_pred CCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC
Confidence 34555555555554 2334443 34444444 555655534444443 345566666 6666655 344454431 11
Q ss_pred CCCCeEEecCCCCcccccccccCCC-CCccEeEEcC
Q 003013 716 TNLKSLKVHDLKISKALLEWGSNRF-TSLRKLEIWG 750 (857)
Q Consensus 716 ~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~ 750 (857)
++|+.|++++|..+..++...+..+ ++|++|++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 4556666665543344444445555 6666666665
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.53 E-value=1.8e-15 Score=157.85 Aligned_cols=78 Identities=22% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC-CCCCCCeEecCCCCCCcccCCCCCCccccCceec
Q 003013 716 TNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP-FPASLTELWISFMPDLECLSSIGENLTSLKTLRL 794 (857)
Q Consensus 716 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l 794 (857)
++|+.|++++|......+...+..+++|++|++++ +.+..+|. .+++|++|++++ ++++.+|. ...+++|++|++
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~--N~l~~ip~~~~~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF--TGLKQVPKGLPAKLSVLDLSY-NRLDRNPS-PDELPQVGNLSL 303 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT--SCCSSCCSSCCSEEEEEECCS-SCCCSCCC-TTTSCEEEEEEC
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC--CccChhhhhccCCceEEECCC-CCCCCChh-HhhCCCCCEEec
Confidence 34444444444432222112233345555555554 12333333 123455555554 45666553 556666666666
Q ss_pred cCC
Q 003013 795 SYC 797 (857)
Q Consensus 795 ~~c 797 (857)
++|
T Consensus 304 ~~N 306 (312)
T 1wwl_A 304 KGN 306 (312)
T ss_dssp TTC
T ss_pred cCC
Confidence 666
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.53 E-value=2.1e-16 Score=175.59 Aligned_cols=110 Identities=22% Similarity=0.206 Sum_probs=57.4
Q ss_pred CcCCCCCCCCCeEEeecCCCCcc-----cCCC-CCCCCCcceEeeccccCccc----CcccCCCCCCccEEeecCCCCCc
Q 003013 638 PAGLHNLHHLQKISIADCPNLES-----FPEE-GLPSTKLTELSIRECENLKA----LPNCMHNLTSLLNLEIRRCPSVV 707 (857)
Q Consensus 638 ~~~~~~l~~L~~L~l~~c~~l~~-----l~~~-~~~~~~L~~L~l~~c~~l~~----l~~~~~~l~~L~~L~l~~c~~l~ 707 (857)
+..+..+++|++|++++|. +.. +... ....++|++|++++|..... ++..+..+++|++|++++| .+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~ 354 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLE 354 (461)
T ss_dssp HHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred HHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence 3344456777777777763 321 1111 11224777777777653221 3444556677777777776 333
Q ss_pred ccCCC-------CCCCCCCeEEecCCCCcc----cccccccCCCCCccEeEEcC
Q 003013 708 SFPED-------GFPTNLKSLKVHDLKISK----ALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 708 ~l~~~-------~~~~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~ 750 (857)
..... ...++|+.|++++|.... .++ ..+..+++|++|++++
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~-~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-ATLLANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HHHHHCCCCCEEECCS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHH-HHHHhCCCccEEECCC
Confidence 22110 113567777777775533 222 2344566666666665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=6.2e-15 Score=153.76 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=87.6
Q ss_pred hcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCC-CCcchhhhC-------CCCCCcEEeEcCCCCC
Q 003013 353 QDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQG-LTKLPQALL-------TLCSLTDMKILGCASL 424 (857)
Q Consensus 353 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~-l~~lp~~~~-------~l~~L~~L~l~~~~~l 424 (857)
....+|+.|+++++.- .+|.. ++..|++|+|+++.. ...+|..+. .+++|++|++++|...
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~---------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 108 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQ---------FTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHH---------HHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCB
T ss_pred ccCCCceeEeeccccc--ccHHH---------HHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCccc
Confidence 3344566666665432 33221 223366666666543 113454444 6788888888887544
Q ss_pred CcCCC-C--CCCCCcceeeccccccccccchhhhcCCC-----CCccEEEEecCCCCCCCC--CCCCCCCccEEeccccc
Q 003013 425 VSFPE-V--ALPSQLRTVRIQECNALKSLPEAWMYNSN-----SSLESLKIRSCNSLVSFP--EIALPSQLRTVRIQECN 494 (857)
Q Consensus 425 ~~~~~-~--~~l~~L~~L~l~~~~~l~~l~~~~~~~~l-----~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~ 494 (857)
..+|. + +.+++|++|+++++. +..+|..+.. + ++|++|++++|.. ..++ .+..+++|++|+++++.
T Consensus 109 ~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 109 GTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAE--LQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp SCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHH--HHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCT
T ss_pred chhHHHHHHhcCCCccEEEccCCC-CcchhHHHHH--HHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCC
Confidence 45554 2 667888888888776 6666655543 4 7888888887643 3333 34667777777777754
Q ss_pred cccc--cChhhhccCCCCccEEEecCC
Q 003013 495 ALKS--LPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 495 ~l~~--lp~~~~~~~l~~L~~L~l~~c 519 (857)
.... +|..+....+++|+.|+++++
T Consensus 185 l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 185 ELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp TCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred cCcchHHHHHHHhccCCCCCEEECCCC
Confidence 3322 222332233566666666664
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=3.8e-13 Score=138.40 Aligned_cols=194 Identities=21% Similarity=0.250 Sum_probs=150.4
Q ss_pred CCcceeeccCcCCccccC-cCCCCCCCCCeEEeecCCCCccc-CCCCCCCCCcceEeeccccCcccC-cccCCCCCCccE
Q 003013 621 TSLEGIFIYELENLKSLP-AGLHNLHHLQKISIADCPNLESF-PEEGLPSTKLTELSIRECENLKAL-PNCMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~ 697 (857)
..++.|++++ ..+..++ ..+..+++|++|+++++ .+..+ +..+..+++|++|+++++..++.+ |..+..+++|++
T Consensus 32 ~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 4788888887 4566665 56888999999999998 45555 556778899999999998767766 667889999999
Q ss_pred EeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecC
Q 003013 698 LEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWIS 771 (857)
Q Consensus 698 L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~ 771 (857)
|++++|. +..++.. ..+++|++|++++|... .++...+..+++|++|++++ +.+..++. .+++|++|+++
T Consensus 110 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 110 LHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG--NRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCCc-CCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCC--CcccccCHHHhcCccccCEEECC
Confidence 9999984 5555433 45689999999998764 44444578899999999998 35555554 47899999999
Q ss_pred CCCCCccc-CCCCCCccccCceeccCCCCCCCCCCC--CccccccceeecCCcc
Q 003013 772 FMPDLECL-SSIGENLTSLKTLRLSYCRKLTYFSKE--GLPKSLLRLYINHCPL 822 (857)
Q Consensus 772 ~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~ip~~--~l~~~L~~L~i~~c~~ 822 (857)
++ .++.+ +.....+++|+.|++++| .+..+|.. .-.++|+.|+++++|.
T Consensus 186 ~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 186 QN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CC-cccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 94 56666 545588999999999999 67777653 2236899999998863
No 74
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=6.2e-13 Score=141.02 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=65.9
Q ss_pred CCCCceEEEccCCCCCCcchh-hhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCC
Q 003013 385 LPCRLRFLELSYCQGLTKLPQ-ALLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSS 461 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~ 461 (857)
+|.++++|+|++| .++.+|. .+..+++|++|+|++|...+.+|. +..+++|+++.+.++..+..++.... ..+++
T Consensus 28 l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f-~~l~~ 105 (350)
T 4ay9_X 28 LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPN 105 (350)
T ss_dssp CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB-CCCTT
T ss_pred cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhh-hhccc
Confidence 4577888888875 4567765 467788888888888765555553 34566666655554445666654332 23677
Q ss_pred ccEEEEecCCCCCCCCCCC--CCCCccEEeccccccccccCh
Q 003013 462 LESLKIRSCNSLVSFPEIA--LPSQLRTVRIQECNALKSLPE 501 (857)
Q Consensus 462 L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~lp~ 501 (857)
|++|++++| .+..++... ...++..|++.++..+..++.
T Consensus 106 L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp CCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred ccccccccc-ccccCCchhhcccchhhhhhhccccccccccc
Confidence 777777764 344444322 223344444444444444443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.50 E-value=6.3e-13 Score=136.46 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=62.7
Q ss_pred hcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCC
Q 003013 353 QDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVAL 432 (857)
Q Consensus 353 ~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 432 (857)
..+++++.+++++ ..++.+|.. +|.++++|+|++|......|..+..+++|++|++++| .+..++..+.
T Consensus 7 ~~l~~l~~l~~~~-~~l~~ip~~---------~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 75 (290)
T 1p9a_G 7 SKVASHLEVNCDK-RNLTALPPD---------LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGT 75 (290)
T ss_dssp ECSTTCCEEECTT-SCCSSCCSC---------CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSC
T ss_pred cccCCccEEECCC-CCCCcCCCC---------CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCC
Confidence 4556677777766 345554432 3467777777776543334566777777777777776 4555554455
Q ss_pred CCCcceeeccccccccccchhhhcCCCCCccEEEEecC
Q 003013 433 PSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSC 470 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~ 470 (857)
+++|++|+++++. +..+|..+.. +++|++|++++|
T Consensus 76 l~~L~~L~Ls~N~-l~~l~~~~~~--l~~L~~L~l~~N 110 (290)
T 1p9a_G 76 LPVLGTLDLSHNQ-LQSLPLLGQT--LPALTVLDVSFN 110 (290)
T ss_dssp CTTCCEEECCSSC-CSSCCCCTTT--CTTCCEEECCSS
T ss_pred CCcCCEEECCCCc-CCcCchhhcc--CCCCCEEECCCC
Confidence 6666666666654 5555554433 556666666553
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=1e-13 Score=153.62 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=47.1
Q ss_pred CCCCccEEeecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCe
Q 003013 691 NLTSLLNLEIRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTE 767 (857)
Q Consensus 691 ~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~ 767 (857)
.+++|++|++++| .+..++....+++|+.|++++|.... +++ .+..+++|+.|++++ +.+..+|. .+++|+.
T Consensus 167 ~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~-~~~~l~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~ 241 (487)
T 3oja_A 167 SSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRN--NKLVLIEKALRFSQNLEH 241 (487)
T ss_dssp GTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTT--SCCCEECTTCCCCTTCCE
T ss_pred hCCcccEEecCCC-ccccccccccCCCCCEEECCCCCCCC-CCH-hHcCCCCccEEEecC--CcCcccchhhccCCCCCE
Confidence 3455555555555 23344433344555555555554422 222 245556666666665 22223332 2344555
Q ss_pred EecCCCCCC-cccCCCCCCccccCceecc
Q 003013 768 LWISFMPDL-ECLSSIGENLTSLKTLRLS 795 (857)
Q Consensus 768 L~l~~~~~l-~~l~~~~~~l~~L~~L~l~ 795 (857)
|++++++-. ..+|.....++.|+.+++.
T Consensus 242 L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 555553222 1333333556666666664
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.49 E-value=1.4e-12 Score=138.22 Aligned_cols=151 Identities=20% Similarity=0.195 Sum_probs=86.2
Q ss_pred CCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcc-cCCCC-CCccEEeecCCCCCcccCCC-CCCC
Q 003013 641 LHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPN-CMHNL-TSLLNLEIRRCPSVVSFPED-GFPT 716 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l-~~L~~L~l~~c~~l~~l~~~-~~~~ 716 (857)
+..+++|++|+++++ .+..++. ......++..|++.++..+..++. .+..+ ..++.|+++++ .++.++.. ....
T Consensus 100 f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGT 177 (350)
T ss_dssp BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTE
T ss_pred hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhcccc
Confidence 445555666666555 2333333 222334555555555555555443 23333 24556666655 34555543 2234
Q ss_pred CCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC-CCCCCCeEecCCCCCCcccCCCCCCccccCceecc
Q 003013 717 NLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP-FPASLTELWISFMPDLECLSSIGENLTSLKTLRLS 795 (857)
Q Consensus 717 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~ 795 (857)
+|+.|++.++..+..++...+..+++|++|++++ +.+..+|. .+.+|+.|.+.++++++.+| ....+++|+.+++.
T Consensus 178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISR--TRIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT--SCCCCCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred chhHHhhccCCcccCCCHHHhccCcccchhhcCC--CCcCccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 5666666665555666555566677777777776 35666665 46677777777777777777 45667777777765
Q ss_pred C
Q 003013 796 Y 796 (857)
Q Consensus 796 ~ 796 (857)
+
T Consensus 255 ~ 255 (350)
T 4ay9_X 255 Y 255 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=9.7e-13 Score=135.03 Aligned_cols=188 Identities=23% Similarity=0.227 Sum_probs=120.9
Q ss_pred CcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCccc-CCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 622 SLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESF-PEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 622 ~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
+++.+++.+ ..++.+|..+. +.|+.|+++++. +..+ +..+..+++|++|+++++. ++.++.. ..+++|++|++
T Consensus 11 ~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDK-RNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEEC
T ss_pred CccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEEC
Confidence 445555544 45666665553 677777777764 3333 3445566777777777754 5555543 66777777777
Q ss_pred cCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCC
Q 003013 701 RRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPD 775 (857)
Q Consensus 701 ~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~ 775 (857)
+++ .+..+|.. ..+++|+.|++++|.. ..++...+..+++|++|++++ +.+..+++ .+++|+.|++++ ++
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~-N~ 159 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKLEKLSLAN-NN 159 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECCC--CCCCccChhhcccccCCCEEECCC-Cc
Confidence 776 45566653 4456777777777754 334444567777777777776 35555554 356777777777 56
Q ss_pred CcccCCCC-CCccccCceeccCCCCCCCCCCCC-ccccccceeecCCc
Q 003013 776 LECLSSIG-ENLTSLKTLRLSYCRKLTYFSKEG-LPKSLLRLYINHCP 821 (857)
Q Consensus 776 l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~~-l~~~L~~L~i~~c~ 821 (857)
++.+|... ..+++|+.|++++| .++.+|... -.++|+.|+++++|
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 77777655 66788888888877 667777642 22467778877655
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=2e-12 Score=131.59 Aligned_cols=187 Identities=24% Similarity=0.291 Sum_probs=122.2
Q ss_pred ceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCccc-CCCCCCccEEeec
Q 003013 624 EGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPNC-MHNLTSLLNLEIR 701 (857)
Q Consensus 624 ~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~ 701 (857)
+.++.++ ..++.+|..+. ++|+.|+++++ .+..++. .+..+++|++|+++++. ++.+|.. +..+++|++|+++
T Consensus 19 ~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 19 NSVDCSS-KKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECC
T ss_pred CEEEccC-CCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECC
Confidence 3444443 45666665443 57788888776 3555554 45567788888887754 5555543 4667888888887
Q ss_pred CCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCC
Q 003013 702 RCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPD 775 (857)
Q Consensus 702 ~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~ 775 (857)
+| .+..++.. ..+++|++|++++|.. ..++...+..+++|++|++++ +.+..++. .+++|++|++++ +.
T Consensus 94 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~-n~ 168 (270)
T 2o6q_A 94 DN-KLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLTKLTYLSLGY--NELQSLPKGVFDKLTSLKELRLYN-NQ 168 (270)
T ss_dssp SS-CCCCCCTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CC-cCCcCCHhHcccccCCCEEECCCCcc-CeeCHHHhCcCcCCCEEECCC--CcCCccCHhHccCCcccceeEecC-Cc
Confidence 77 35555543 3457788888877764 333344567778888888876 34555554 357788888877 46
Q ss_pred CcccCCCC-CCccccCceeccCCCCCCCCCCCCc--cccccceeecCCc
Q 003013 776 LECLSSIG-ENLTSLKTLRLSYCRKLTYFSKEGL--PKSLLRLYINHCP 821 (857)
Q Consensus 776 l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~~l--~~~L~~L~i~~c~ 821 (857)
++.++... ..+++|+.|++++| .++.+|...+ .++|+.|+++++|
T Consensus 169 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 169 LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 77776543 67788888888887 6677766433 2578888887765
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=1.1e-12 Score=134.24 Aligned_cols=174 Identities=17% Similarity=0.183 Sum_probs=97.7
Q ss_pred CCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCC
Q 003013 640 GLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPT 716 (857)
Q Consensus 640 ~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~ 716 (857)
.+..+++|++|++++| .+..++. .+..+++|++|+++++......+..+..+++|++|++.+| .+..++.. ..++
T Consensus 47 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-CccccCchhcccCC
Confidence 4555666777777666 3444443 3455666777777665432223345666677777777666 33444331 3456
Q ss_pred CCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCC----eEecCCCCCCcccCCCCCCccc
Q 003013 717 NLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLT----ELWISFMPDLECLSSIGENLTS 788 (857)
Q Consensus 717 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~----~L~l~~~~~l~~l~~~~~~l~~ 788 (857)
+|++|++++|.......+..+..+++|++|++++ +.+..++. .+++|+ +|++++ +.++.++.......+
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS--NKIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIR 201 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS--SCCCEECGGGGHHHHTCTTCCEEEECCS-SCCCEECTTSSCSCC
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCC--CCCCcCCHHHhhhhhhccccceeeecCC-CcccccCccccCCCc
Confidence 6777777666543321122456666777777765 23443332 123333 566666 456666655544557
Q ss_pred cCceeccCCCCCCCCCCCCc--cccccceeecC
Q 003013 789 LKTLRLSYCRKLTYFSKEGL--PKSLLRLYINH 819 (857)
Q Consensus 789 L~~L~l~~c~~l~~ip~~~l--~~~L~~L~i~~ 819 (857)
|+.|++++| .++.+|...+ .++|+.|++++
T Consensus 202 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 202 LKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EEEEECCSS-CCSCCCTTTTTTCCSCCEEECCS
T ss_pred ccEEECCCC-ceeecCHhHhcccccccEEEccC
Confidence 777777777 4666665322 25677777763
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.47 E-value=3.1e-13 Score=140.25 Aligned_cols=59 Identities=15% Similarity=0.285 Sum_probs=33.8
Q ss_pred CCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCC
Q 003013 641 LHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRC 703 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c 703 (857)
+..+++|+.|++++| .+..++. +..+++|++|++++|. +..++. +..+++|+.|++++|
T Consensus 169 l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 169 LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQ 227 (308)
T ss_dssp GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEE
T ss_pred hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCC
Confidence 445667777777766 3444443 4445566666666643 444442 555666666666655
No 82
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.45 E-value=1.9e-13 Score=153.65 Aligned_cols=161 Identities=18% Similarity=0.192 Sum_probs=112.4
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc--ccchhccCCceEEEEeCCCC--CHHHHHHHH
Q 003013 146 YGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN--DDRVQRHYEIKAWTCVSEDF--DVFGVSKFI 221 (857)
Q Consensus 146 vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~--~~~~~~~Fd~~~wv~vs~~~--~~~~i~~~i 221 (857)
|||+.++++|.++|..+ .++++++|+|||||||||||||++||+ +.+++.+||.++||+|++.+ +...++++|
T Consensus 131 ~GR~~~~~~l~~~L~~~---~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 69999999999999754 234689999999999999999999998 67899999999999999985 899999999
Q ss_pred HHHccCCCC---C---CCCChHHHHHHHHhhc------------ccc----ccccCCCCcccc------c---------c
Q 003013 222 LNSIAKDQS---N---NDDDLNSLQVKLKERL------------EWE----EWIPCGAGQEVD------E---------V 264 (857)
Q Consensus 222 ~~~l~~~~~---~---~~~~~~~~~~~l~~~l------------~w~----~w~~~~~~~~i~------~---------~ 264 (857)
+.+++.... . +..+.+.++..+++.| +|. .|.. +.|++|. . .
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~-~~gs~ilvTTR~~~v~~~~~~~~~ 286 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ-ELRLRCLVTTRDVEISNAASQTCE 286 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH-HTTCEEEEEESBGGGGGGCCSCEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc-cCCCEEEEEcCCHHHHHHcCCCCe
Confidence 999986521 0 2234455566665554 332 2432 1334331 0 1
Q ss_pred ccccceeeccccchhhcCC----c--hhcccccchhcccccchhhhccCCCC
Q 003013 265 FPKLRRLSLHRCDKLQGTL----P--KRLLLLDTLYITSCDQLLMTIQCLPA 310 (857)
Q Consensus 265 ~~~L~~l~~~~c~~l~~~l----p--~~l~~L~~l~~~~c~~l~~~~~~l~~ 310 (857)
...+..|....++.++... | ..+..+..-.+..|+|+|+++..++.
T Consensus 287 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~ 338 (549)
T 2a5y_B 287 FIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFK 338 (549)
T ss_dssp EEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred EEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHH
Confidence 1234455555666554221 1 23334455677889999999876654
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.43 E-value=8.6e-13 Score=136.96 Aligned_cols=186 Identities=17% Similarity=0.204 Sum_probs=132.1
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
..++.|++.++ .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|. ++.++ .+..+++|++|++
T Consensus 41 ~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 46677777764 566665 4677888888888887 5556665 6677888888888865 66665 5778888888888
Q ss_pred cCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcc
Q 003013 701 RRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLEC 778 (857)
Q Consensus 701 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ 778 (857)
++| .+..++....+++|+.|++++|..... + .+..+++|++|++++ | .+..+++ .+++|+.|++++ +.++.
T Consensus 115 ~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~-n-~l~~~~~l~~l~~L~~L~l~~-n~l~~ 187 (308)
T 1h6u_A 115 TST-QITDVTPLAGLSNLQVLYLDLNQITNI-S--PLAGLTNLQYLSIGN-A-QVSDLTPLANLSKLTTLKADD-NKISD 187 (308)
T ss_dssp TTS-CCCCCGGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCCEEECCS-S-CCCCCGGGTTCTTCCEEECCS-SCCCC
T ss_pred CCC-CCCCchhhcCCCCCCEEECCCCccCcC-c--cccCCCCccEEEccC-C-cCCCChhhcCCCCCCEEECCC-CccCc
Confidence 887 455565555668888888888865332 2 266788888888887 2 4555543 567888888888 46777
Q ss_pred cCCCCCCccccCceeccCCCCCCCCCCCCccccccceeecCCc
Q 003013 779 LSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCP 821 (857)
Q Consensus 779 l~~~~~~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c~ 821 (857)
++. ...+++|+.|++++| .+..++.-.-.++|+.|++++|+
T Consensus 188 ~~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CGG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred Chh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence 663 567888888888888 56666542233678888888775
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=2.1e-14 Score=152.06 Aligned_cols=129 Identities=16% Similarity=0.161 Sum_probs=83.0
Q ss_pred CCceEEEccCCCCCCcchhhhCCC--CCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccc--cchhhhcCCCCCc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTL--CSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKS--LPEAWMYNSNSSL 462 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l--~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~--l~~~~~~~~l~~L 462 (857)
..++.++++++.. .+..+..+ .+++.|+++++......+.+..+++|++|++++|. +.. ++..+.. +++|
T Consensus 47 ~~~~~l~l~~~~~---~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~--~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ--CSKL 120 (336)
T ss_dssp TTSSEEECTTCBC---CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT--BCCC
T ss_pred hhheeeccccccC---CHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh--CCCC
Confidence 4466777776543 25555666 78888888887544445556678888888888876 443 5555544 8888
Q ss_pred cEEEEecCCCCCCCC-CCCCCCCccEEeccccccccc--cChhhhccCCCCccEEEecCCCCCc
Q 003013 463 ESLKIRSCNSLVSFP-EIALPSQLRTVRIQECNALKS--LPEAWMHNSNSSLESLEIRSCDSLT 523 (857)
Q Consensus 463 ~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~--lp~~~~~~~l~~L~~L~l~~c~~l~ 523 (857)
++|++++|......+ .+..+++|++|++++|..+.. ++..+.. +++|++|++++|..++
T Consensus 121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~--~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS--CSRLDELNLSWCFDFT 182 (336)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH--CTTCCEEECCCCTTCC
T ss_pred CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc--CCCCCEEcCCCCCCcC
Confidence 888888774222222 345677888888888755543 4443333 6778888887764444
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.41 E-value=3.3e-12 Score=130.68 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=79.3
Q ss_pred CCCCceEEEccCCCCCCcch-hhhCCCCCCcEEeEcCCCCCCcCC--CCCCCCCcceeeccccccccccc-hhhhcCCCC
Q 003013 385 LPCRLRFLELSYCQGLTKLP-QALLTLCSLTDMKILGCASLVSFP--EVALPSQLRTVRIQECNALKSLP-EAWMYNSNS 460 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~--~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~~l~ 460 (857)
+|++|++|++++|.. ..++ ..+..+++|++|++++| .+..++ .+..+++|++|+++++. +..++ ..+.. ++
T Consensus 26 l~~~l~~L~ls~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~--l~ 100 (276)
T 2z62_A 26 LPFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG--LS 100 (276)
T ss_dssp SCTTCCEEECTTCCC-CEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTT--CT
T ss_pred CCCCccEEECCCCcc-cccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcC--Cc
Confidence 457788888888653 4444 36788888888888887 455544 25667888888888776 55555 33433 77
Q ss_pred CccEEEEecCCCCCCCC--CCCCCCCccEEeccccccccc--cChhhhccCCCCccEEEecCC
Q 003013 461 SLESLKIRSCNSLVSFP--EIALPSQLRTVRIQECNALKS--LPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 461 ~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~--lp~~~~~~~l~~L~~L~l~~c 519 (857)
+|++|++++|. +..++ .+..+++|++|+++++. +.. +|..+.. +++|+.|+++++
T Consensus 101 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~--l~~L~~L~Ls~N 159 (276)
T 2z62_A 101 SLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSN--LTNLEHLDLSSN 159 (276)
T ss_dssp TCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGG--CTTCCEEECCSS
T ss_pred cccEEECCCCC-ccccCchhcccCCCCCEEECcCCc-cceecCchhhcc--CCCCCEEECCCC
Confidence 88888887753 33333 24566677777776643 332 3444433 456666666553
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=1e-11 Score=126.27 Aligned_cols=171 Identities=23% Similarity=0.320 Sum_probs=136.4
Q ss_pred CCcceeeccCcCCccccCc-CCCCCCCCCeEEeecCCCCcccCCCC-CCCCCcceEeeccccCcccCcc-cCCCCCCccE
Q 003013 621 TSLEGIFIYELENLKSLPA-GLHNLHHLQKISIADCPNLESFPEEG-LPSTKLTELSIRECENLKALPN-CMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~ 697 (857)
..++.|++++ ..+..++. .+..+++|++|+++++ .+..++... ..+++|++|+++++. ++.+|. .+..+++|++
T Consensus 37 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCE
T ss_pred CCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCE
Confidence 4678888887 45666654 6889999999999987 566777654 568999999999976 555654 5688999999
Q ss_pred EeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecC
Q 003013 698 LEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWIS 771 (857)
Q Consensus 698 L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~ 771 (857)
|++++| .+..++.. ..+++|++|++++|.. ..++...+..+++|++|++++ +.+..+++ .+++|++|+++
T Consensus 114 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 114 LRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYN--NQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECC
T ss_pred EECCCC-ccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecC--CcCcEeChhHhccCCCcCEEECC
Confidence 999998 46666654 4579999999999965 445555678899999999998 35666654 46899999999
Q ss_pred CCCCCcccCCCC-CCccccCceeccCCCC
Q 003013 772 FMPDLECLSSIG-ENLTSLKTLRLSYCRK 799 (857)
Q Consensus 772 ~~~~l~~l~~~~-~~l~~L~~L~l~~c~~ 799 (857)
+ +.++.++... ..+++|+.|++++||-
T Consensus 190 ~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 190 N-NQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp S-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-CcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9 4788888664 7899999999999964
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=2.2e-12 Score=134.30 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=141.5
Q ss_pred CCcceeeccCcCCccccCcCC--CCCCCCCeEEeecCCCCcccC----CCCCCCCCcceEeeccccCcccCcccCCCCCC
Q 003013 621 TSLEGIFIYELENLKSLPAGL--HNLHHLQKISIADCPNLESFP----EEGLPSTKLTELSIRECENLKALPNCMHNLTS 694 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~--~~l~~L~~L~l~~c~~l~~l~----~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 694 (857)
.+|+.|+++++.-....|..+ ..+++|++|++++|..-...+ .....+++|++|++++|......+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 468889998865555667766 889999999999986443332 12335789999999998754555567889999
Q ss_pred ccEEeecCCCCCcc--cCCC---CCCCCCCeEEecCCCCcc--cccccccCCCCCccEeEEcCCCCCCCCC-CC------
Q 003013 695 LLNLEIRRCPSVVS--FPED---GFPTNLKSLKVHDLKISK--ALLEWGSNRFTSLRKLEIWGPCPDLVSP-PP------ 760 (857)
Q Consensus 695 L~~L~l~~c~~l~~--l~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~l~~~-~~------ 760 (857)
|++|++++|..... ++.. ..+++|++|++++|.... ......+..+++|++|++++ +.+..+ |.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHhcc
Confidence 99999999964331 2211 346899999999997632 11111246779999999998 345544 32
Q ss_pred CCCCCCeEecCCCCCCcccCCCCCCccccCceeccCCCCCCCCCCCCccccccceeecCCc
Q 003013 761 FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSYCRKLTYFSKEGLPKSLLRLYINHCP 821 (857)
Q Consensus 761 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~~c~ 821 (857)
.+++|++|++++ +.++.+|.... ++|+.|++++| .++.+|...-.++|+.|++++++
T Consensus 249 ~~~~L~~L~Ls~-N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 249 WSSALNSLNLSF-AGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTCCCEECCS-SCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred CcCcCCEEECCC-CCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 237999999998 57888886553 79999999999 77777664344789999999886
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=6.9e-14 Score=148.03 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=29.4
Q ss_pred CCccEEEEecCCCCCCCCCCCCCCCccEEeccccccccc-cChhhhccCCCCccEEEecCC
Q 003013 460 SSLESLKIRSCNSLVSFPEIALPSQLRTVRIQECNALKS-LPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 460 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-lp~~~~~~~l~~L~~L~l~~c 519 (857)
++++.|+++++......+....+++|++|++++|..-.. ++..+. .+++|++|++++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~--~~~~L~~L~L~~~ 128 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS--QCSKLQNLSLEGL 128 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHT--TBCCCSEEECTTC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHh--hCCCCCEEeCcCc
Confidence 455555555543333333445556666666666542111 333222 2566666666665
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.36 E-value=1.3e-11 Score=128.34 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCceEEEccCCCCCC----cchhhhCCCCCCcEEeEcCCCCCCcCCC-C--CCCCCcceeeccccccccc-cch--hhhc
Q 003013 387 CRLRFLELSYCQGLT----KLPQALLTLCSLTDMKILGCASLVSFPE-V--ALPSQLRTVRIQECNALKS-LPE--AWMY 456 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~----~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~--~~l~~L~~L~l~~~~~l~~-l~~--~~~~ 456 (857)
..++.+.+.++.... .++. ...+++|++|++++|......|. + +.+++|++|+++++. +.. .+. ....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALR-VLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHH-HHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred cceeEEEEeCCcCCHHHHHHHHH-hcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 346667776654311 1111 22345688888888755445543 2 567788888888766 332 220 0111
Q ss_pred CCCCCccEEEEecCCCCCCCC-CCCCCCCccEEeccccc
Q 003013 457 NSNSSLESLKIRSCNSLVSFP-EIALPSQLRTVRIQECN 494 (857)
Q Consensus 457 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 494 (857)
..+++|++|++++|......+ .+..+++|++|+++++.
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 180 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP 180 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC
Confidence 236777777777764322222 23455666666666643
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.36 E-value=7.9e-12 Score=127.28 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=34.5
Q ss_pred CCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCC--CCCCCCcc
Q 003013 409 TLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPE--IALPSQLR 486 (857)
Q Consensus 409 ~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~ 486 (857)
.+++|+.|+++++ .+..++.+..+++|++|+++++. +..++ .+.. +++|++|++++|. +..++. +..+++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~--l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNSIDQIIANNS-DIKSVQGIQYLPNVRYLALGGNK-LHDIS-ALKE--LTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTTCCEEECTTS-CCCCCTTGGGCTTCCEEECTTSC-CCCCG-GGTT--CTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred cccceeeeeeCCC-CcccccccccCCCCcEEECCCCC-CCCch-hhcC--CCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 3445555555544 34444444445555555555443 33332 2222 5555555555432 222222 23444455
Q ss_pred EEeccc
Q 003013 487 TVRIQE 492 (857)
Q Consensus 487 ~L~l~~ 492 (857)
+|++++
T Consensus 113 ~L~L~~ 118 (272)
T 3rfs_A 113 ELVLVE 118 (272)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 555544
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.34 E-value=2.7e-11 Score=121.68 Aligned_cols=167 Identities=22% Similarity=0.230 Sum_probs=110.6
Q ss_pred cceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccC-CCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeec
Q 003013 623 LEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFP-EEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIR 701 (857)
Q Consensus 623 L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 701 (857)
.+.++..+ ..+..+|..+. +.|+.|+++++. +..++ ..+..+++|++|+++++..-...+..+..+++|++|+++
T Consensus 16 ~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 33444444 56677776654 688888888874 44443 356677888888888865333334457788888888888
Q ss_pred CCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCC
Q 003013 702 RCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPD 775 (857)
Q Consensus 702 ~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~ 775 (857)
+| .+..++.. ..+++|++|++++|.. ..++...+..+++|++|++++ +.+..+++ .+++|+.|++++ +.
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~-N~ 166 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNT--NQLQSIPAGAFDKLTNLQTLSLST-NQ 166 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcC--CcCCccCHHHcCcCcCCCEEECCC-Cc
Confidence 87 45566543 3467888888888754 344444567778888888876 35555544 346677777777 45
Q ss_pred CcccCCCC-CCccccCceeccCCC
Q 003013 776 LECLSSIG-ENLTSLKTLRLSYCR 798 (857)
Q Consensus 776 l~~l~~~~-~~l~~L~~L~l~~c~ 798 (857)
++.++... ..+++|+.|++++|+
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCHHHHhCCCCCCEEEeeCCc
Confidence 66666433 667777777777774
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=3.3e-11 Score=122.63 Aligned_cols=170 Identities=24% Similarity=0.280 Sum_probs=117.9
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc-cCCCCCCccEEe
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLE 699 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~ 699 (857)
..++.+.+.++ .+..++ .+..+++|++|++++|. +..++ .+..+++|++|++++|. ++.++. .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEE
Confidence 45666666663 455554 36678888888888874 44443 45667788888888865 444443 467888888888
Q ss_pred ecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCC
Q 003013 700 IRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFM 773 (857)
Q Consensus 700 l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~ 773 (857)
+++| .+..++.. ..+++|++|++++|.. ..++...+..+++|++|++++ + .+..+++ .+++|+.|++++
T Consensus 116 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~-n-~l~~~~~~~~~~l~~L~~L~L~~- 190 (272)
T 3rfs_A 116 LVEN-QLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSY-N-QLQSLPEGVFDKLTQLKDLRLYQ- 190 (272)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS-S-CCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCCC-cCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEECCC-C-CcCccCHHHhcCCccCCEEECCC-
Confidence 8888 45555553 4467888888888854 344444567788888888887 2 4555554 467888888888
Q ss_pred CCCcccCCCC-CCccccCceeccCCCCC
Q 003013 774 PDLECLSSIG-ENLTSLKTLRLSYCRKL 800 (857)
Q Consensus 774 ~~l~~l~~~~-~~l~~L~~L~l~~c~~l 800 (857)
+.++.++... ..+++|+.|++++|+..
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 4677666554 77888888888888543
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=6.6e-11 Score=131.90 Aligned_cols=175 Identities=24% Similarity=0.297 Sum_probs=135.4
Q ss_pred CcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeec
Q 003013 622 SLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIR 701 (857)
Q Consensus 622 ~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~ 701 (857)
+++.|++++ .++..+|..+ +++|++|++++| .+..+| ..+++|++|++++|. ++.+|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~-n~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNR-LNLSSLPDNL--PPQITVLEITQN-ALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCS-SCCSCCCSCC--CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECC
T ss_pred CccEEEeCC-CCCCccCHhH--cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECC
Confidence 677888877 4677788766 488999999988 566787 346799999999964 667887 544 99999999
Q ss_pred CCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCC
Q 003013 702 RCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSS 781 (857)
Q Consensus 702 ~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~ 781 (857)
+| .+..+|. .+++|+.|++++|.... ++. .+++|++|++++ +.+..+|...++|+.|++++ ++++.+|.
T Consensus 129 ~N-~l~~lp~--~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~--N~L~~lp~l~~~L~~L~Ls~-N~L~~lp~ 197 (571)
T 3cvr_A 129 NN-QLTMLPE--LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRN--NQLTFLPELPESLEALDVST-NLLESLPA 197 (571)
T ss_dssp SS-CCSCCCC--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCS--SCCSCCCCCCTTCCEEECCS-SCCSSCCC
T ss_pred CC-cCCCCCC--cCccccEEeCCCCccCc-CCC----cCCCcCEEECCC--CCCCCcchhhCCCCEEECcC-CCCCchhh
Confidence 98 5667877 67899999999987643 433 578999999997 45667777668999999999 58888886
Q ss_pred CCCCcccc-------CceeccCCCCCCCCCCC-CccccccceeecCCcc
Q 003013 782 IGENLTSL-------KTLRLSYCRKLTYFSKE-GLPKSLLRLYINHCPL 822 (857)
Q Consensus 782 ~~~~l~~L-------~~L~l~~c~~l~~ip~~-~l~~~L~~L~i~~c~~ 822 (857)
... +| +.|++++| .++.+|.. .-.++|+.|++++|+.
T Consensus 198 -~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 -VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred -HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 432 66 99999998 78888874 2246899999999874
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.23 E-value=9.3e-11 Score=130.70 Aligned_cols=160 Identities=22% Similarity=0.222 Sum_probs=128.2
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
.+|+.|++++ +.+..+| ..+++|++|++++| .+..+|. +.. +|++|++++|. ++.+|. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQ-NALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCTTCCEEEC
T ss_pred CCCCEEECcC-CCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCccccEEeC
Confidence 5688899888 5677888 45899999999998 5667887 443 99999999965 677887 6899999999
Q ss_pred cCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCC-------CeEecCCC
Q 003013 701 RRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASL-------TELWISFM 773 (857)
Q Consensus 701 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L-------~~L~l~~~ 773 (857)
++| .++.+|. .+++|+.|++++|.... ++. +. ++|+.|++++ +.+..+|..+.+| +.|++++
T Consensus 148 s~N-~l~~lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~--N~L~~lp~~~~~L~~~~~~L~~L~Ls~- 216 (571)
T 3cvr_A 148 DNN-QLTMLPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVST--NLLESLPAVPVRNHHSEETEIFFRCRE- 216 (571)
T ss_dssp CSS-CCSCCCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCS--SCCSSCCCCC--------CCEEEECCS-
T ss_pred CCC-ccCcCCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcC--CCCCchhhHHHhhhcccccceEEecCC-
Confidence 998 5677877 67899999999997644 544 33 8999999998 4777887755678 9999999
Q ss_pred CCCcccCCCCCCccccCceeccCCCCCCCC
Q 003013 774 PDLECLSSIGENLTSLKTLRLSYCRKLTYF 803 (857)
Q Consensus 774 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i 803 (857)
+.++.+|.....+++|+.|++++|+.-..+
T Consensus 217 N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 217 NRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp SCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred CcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 689999977777999999999999644433
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=1.5e-10 Score=116.15 Aligned_cols=149 Identities=20% Similarity=0.241 Sum_probs=115.9
Q ss_pred CCcceeeccCcCCcccc-CcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCc-ccCCCCCCccE
Q 003013 621 TSLEGIFIYELENLKSL-PAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALP-NCMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~ 697 (857)
..++.|++.++ .+..+ +..+..+++|++|+++++. +..++. .+..+++|++|+++++. ++.++ ..+..+++|++
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence 46888888884 45555 4568889999999999984 555544 46778999999999976 55555 46789999999
Q ss_pred EeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecC
Q 003013 698 LEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWIS 771 (857)
Q Consensus 698 L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~ 771 (857)
|++++| .++.++.. ..+++|+.|++++|.. ..++...+..+++|++|++++ +.+..+++ .+++|+.|+++
T Consensus 112 L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 112 LYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLST--NQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECC
T ss_pred EEcCCC-cCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCC--CcCCccCHHHHhCCCCCCEEEee
Confidence 999998 67777764 4479999999999965 455555688999999999998 46666664 56899999999
Q ss_pred CCCCCc
Q 003013 772 FMPDLE 777 (857)
Q Consensus 772 ~~~~l~ 777 (857)
++ .+.
T Consensus 188 ~N-~~~ 192 (251)
T 3m19_A 188 GN-QFD 192 (251)
T ss_dssp SC-CBC
T ss_pred CC-cee
Confidence 94 444
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=3.6e-11 Score=123.50 Aligned_cols=170 Identities=19% Similarity=0.193 Sum_probs=126.1
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
..++.+++.++ .+..++. +..+++|++|++++| .+..++. +..+++|++|++++|. ++.++. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEEC
Confidence 46777777763 5666653 777899999999987 4556655 6778899999999865 666654 888999999999
Q ss_pred cCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcc
Q 003013 701 RRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLEC 778 (857)
Q Consensus 701 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ 778 (857)
++| .+..++....+++|+.|++++|..... ..+..+++|++|++++ +.+..+++ .+++|+.|++++ +.++.
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~--N~l~~~~~l~~l~~L~~L~L~~-N~i~~ 192 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLED--NQISDIVPLAGLTKLQNLYLSK-NHISD 192 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCS--SCCCCCGGGTTCTTCCEEECCS-SCCCB
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccC--CccccchhhcCCCccCEEECCC-CcCCC
Confidence 988 466665545678899999998876443 2577888999999987 35555543 568899999988 47777
Q ss_pred cCCCCCCccccCceeccCCCCCCCCCC
Q 003013 779 LSSIGENLTSLKTLRLSYCRKLTYFSK 805 (857)
Q Consensus 779 l~~~~~~l~~L~~L~l~~c~~l~~ip~ 805 (857)
++ ....+++|+.|++++|+ +...|.
T Consensus 193 l~-~l~~l~~L~~L~l~~n~-i~~~~~ 217 (291)
T 1h6t_A 193 LR-ALAGLKNLDVLELFSQE-CLNKPI 217 (291)
T ss_dssp CG-GGTTCTTCSEEEEEEEE-EECCCE
T ss_pred Ch-hhccCCCCCEEECcCCc-ccCCcc
Confidence 76 36788899999998884 444443
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=5.1e-11 Score=114.59 Aligned_cols=104 Identities=14% Similarity=0.143 Sum_probs=73.5
Q ss_pred CCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCC-CCCCCCCCe
Q 003013 642 HNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPE-DGFPTNLKS 720 (857)
Q Consensus 642 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~ 720 (857)
..+++|+.|+++++ .+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++|..-...+. ...+++|++
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678889999887 566776 5667788999999887 455554 577888999999988743222333 255688888
Q ss_pred EEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 721 LKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 721 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
|++++|......+. .+..+++|++|++++
T Consensus 117 L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 117 LDISHSAHDDSILT-KINTLPKVNSIDLSY 145 (197)
T ss_dssp EECCSSBCBGGGHH-HHTTCSSCCEEECCS
T ss_pred EEecCCccCcHhHH-HHhhCCCCCEEEccC
Confidence 88888876543332 466777777777776
No 98
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.19 E-value=1.5e-11 Score=154.49 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccch-hccC-CceEEEEeCCCCC--HHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRV-QRHY-EIKAWTCVSEDFD--VFGV 217 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~-~~~F-d~~~wv~vs~~~~--~~~i 217 (857)
...+|||+++.++|.++|...+ +++++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4559999999999999997643 37899999999999999999999998544 4444 6777999998543 4455
Q ss_pred HHHHHHHccCCCCC---CCCChHHHHHHHHhhc
Q 003013 218 SKFILNSIAKDQSN---NDDDLNSLQVKLKERL 247 (857)
Q Consensus 218 ~~~i~~~l~~~~~~---~~~~~~~~~~~l~~~l 247 (857)
...++..+...... ...+.+.+...++..+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 231 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM 231 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH
Confidence 66777777654321 3456788888888544
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.18 E-value=6.2e-11 Score=133.76 Aligned_cols=170 Identities=20% Similarity=0.207 Sum_probs=131.0
Q ss_pred CCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 621 TSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
..|+.|.+.+ ..+..++ .+..+++|+.|+|++| .+..++. +..+++|+.|++++|. +..+| .+..+++|+.|++
T Consensus 43 ~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 5677777776 4466666 4788999999999988 4556654 6678899999999975 66666 5889999999999
Q ss_pred cCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcc
Q 003013 701 RRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLEC 778 (857)
Q Consensus 701 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~ 778 (857)
++| .+..++....+++|+.|+|++|..... ..+..+++|+.|+|++ +.+..+++ .+++|+.|+|++| .+..
T Consensus 117 s~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~--N~l~~~~~l~~l~~L~~L~Ls~N-~i~~ 189 (605)
T 1m9s_A 117 EHN-GISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLED--NQISDIVPLAGLTKLQNLYLSKN-HISD 189 (605)
T ss_dssp TTS-CCCCCGGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCS--SCCCCCGGGTTCTTCCEEECCSS-CCCB
T ss_pred cCC-CCCCCccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcC--CcCCCchhhccCCCCCEEECcCC-CCCC
Confidence 998 466666556678999999999976443 3678899999999997 34555543 6789999999994 7777
Q ss_pred cCCCCCCccccCceeccCCCCCCCCCC
Q 003013 779 LSSIGENLTSLKTLRLSYCRKLTYFSK 805 (857)
Q Consensus 779 l~~~~~~l~~L~~L~l~~c~~l~~ip~ 805 (857)
++ .+..+++|+.|++++|+ +...|.
T Consensus 190 l~-~l~~l~~L~~L~L~~N~-l~~~p~ 214 (605)
T 1m9s_A 190 LR-ALAGLKNLDVLELFSQE-CLNKPI 214 (605)
T ss_dssp CG-GGTTCTTCSEEECCSEE-EECCCC
T ss_pred Ch-HHccCCCCCEEEccCCc-CcCCcc
Confidence 76 56789999999999984 444444
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=8e-13 Score=142.56 Aligned_cols=106 Identities=16% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCCCCCeEEeecCCCCc------ccCCCCCCCCCcceEeeccccCc----ccCcccCCCCCCccEEeecCCCCCccc---
Q 003013 643 NLHHLQKISIADCPNLE------SFPEEGLPSTKLTELSIRECENL----KALPNCMHNLTSLLNLEIRRCPSVVSF--- 709 (857)
Q Consensus 643 ~l~~L~~L~l~~c~~l~------~l~~~~~~~~~L~~L~l~~c~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~l--- 709 (857)
.+++|++|++++|. +. .++..+..+++|++|++++|..- ..+|..+..+++|++|++++|. +...
T Consensus 185 ~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 262 (386)
T 2ca6_A 185 SHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 262 (386)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred hCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHH
Confidence 34566666666652 32 12223444556666666665421 4455556667777777777764 3221
Q ss_pred --CCC---CCCCCCCeEEecCCCCcc----cccccccCCCCCccEeEEcC
Q 003013 710 --PED---GFPTNLKSLKVHDLKISK----ALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 710 --~~~---~~~~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~ 750 (857)
+.. +.+++|+.|++++|.... .++.....++++|++|++++
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 211 125667777777776544 23332224466777777766
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=1.4e-10 Score=111.45 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=65.1
Q ss_pred cCCCCccEEeecCcccccccCCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCccc-ccccccccCCCCC
Q 003013 306 QCLPALSKLLIHGCKRVVFSGPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLS-LVTEEEHDHQQPE 384 (857)
Q Consensus 306 ~~l~~l~~l~l~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~~~~i~~ 384 (857)
..+++++.+++.++....++.+..+++|+.|++.++ .+..++ .+..+++|++|+++++. +.. .+. .+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n~-l~~~~~~------~l~~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGKD-VTSDKIP------NLSG 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECTT-CBGGGSC------CCTT
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECCc-cCcccCh------hhcC
Confidence 344566666666655333333444444455544443 222221 22444455555555432 221 111 1333
Q ss_pred CCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccE
Q 003013 385 LPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLES 464 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 464 (857)
+ ++|++|++++|......|..+..+++|++|++++|..+..++.+..+++|++|++++|. +..++ .+.. +++|++
T Consensus 111 l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~-~l~~--l~~L~~ 185 (197)
T 4ezg_A 111 L-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYR-GIED--FPKLNQ 185 (197)
T ss_dssp C-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCT-TGGG--CSSCCE
T ss_pred C-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChH-Hhcc--CCCCCE
Confidence 3 44555555554333334444455555555555554334444444444445555554443 34333 2222 444444
Q ss_pred EEEec
Q 003013 465 LKIRS 469 (857)
Q Consensus 465 L~l~~ 469 (857)
|++++
T Consensus 186 L~l~~ 190 (197)
T 4ezg_A 186 LYAFS 190 (197)
T ss_dssp EEECB
T ss_pred EEeeC
Confidence 44444
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.17 E-value=2.1e-10 Score=117.73 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=64.1
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLK 466 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~ 466 (857)
++|++|++++|. +..++. +..+++|++|++++| .+..++.+..+++|++|++++|. +..++. +.. +++|++|+
T Consensus 68 ~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-i~~~~~-l~~--l~~L~~L~ 140 (291)
T 1h6t_A 68 PNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDING-LVH--LPQLESLY 140 (291)
T ss_dssp TTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCGG-GGG--CTTCCEEE
T ss_pred CCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECCCCc-CCCChh-hcC--CCCCCEEE
Confidence 445555555442 233333 455555555555554 34444444445555555555543 444322 222 45555555
Q ss_pred EecCCCCCCCCCCCCCCCccEEeccccccccccChhhhccCCCCccEEEecCCCCCcccccccCCCcccEEeecc
Q 003013 467 IRSCNSLVSFPEIALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCDSLTYIARIQLPPSLKRLIVSD 541 (857)
Q Consensus 467 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 541 (857)
+++| .+..++.+..+++|+.|+++++ .+..++. + ..+++|+.|+++++ .++.++.+...++|+.|++++
T Consensus 141 l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~-l--~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 141 LGNN-KITDITVLSRLTKLDTLSLEDN-QISDIVP-L--AGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp CCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCCGG-G--TTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEE
T ss_pred ccCC-cCCcchhhccCCCCCEEEccCC-ccccchh-h--cCCCccCEEECCCC-cCCCChhhccCCCCCEEECcC
Confidence 5443 2333344444555555555553 2333333 1 12455555555553 333344344444455544444
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.16 E-value=3.8e-11 Score=121.14 Aligned_cols=159 Identities=17% Similarity=0.133 Sum_probs=122.4
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCC
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPE 711 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~ 711 (857)
..+..++ .+..+++|++|++++| .+..++ .+..+++|++|++++|. ++.++. +..+++|++|++++| .++.++.
T Consensus 29 ~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~ 102 (263)
T 1xeu_A 29 QSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNLNG 102 (263)
T ss_dssp SCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCCTT
T ss_pred CCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCcCc
Confidence 3444554 3566889999999988 677777 56678899999999864 777776 889999999999998 5677776
Q ss_pred CCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC--CCCCCCeEecCCCCCCcccCCCCCCcccc
Q 003013 712 DGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP--FPASLTELWISFMPDLECLSSIGENLTSL 789 (857)
Q Consensus 712 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L 789 (857)
... ++|+.|++++|.... ++ .+..+++|++|++++ +.+..++. .+++|+.|++++ +.++.+ .....+++|
T Consensus 103 ~~~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~--N~i~~~~~l~~l~~L~~L~L~~-N~i~~~-~~l~~l~~L 174 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRN--NKLKSIVMLGFLSKLEVLDLHG-NEITNT-GGLTRLKKV 174 (263)
T ss_dssp CCC-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTT--SCCCBCGGGGGCTTCCEEECTT-SCCCBC-TTSTTCCCC
T ss_pred ccc-CcccEEEccCCccCC-Ch--hhcCcccccEEECCC--CcCCCChHHccCCCCCEEECCC-CcCcch-HHhccCCCC
Confidence 544 899999999997644 32 578899999999997 35555554 578999999999 577777 356889999
Q ss_pred CceeccCCCCCCCCCC
Q 003013 790 KTLRLSYCRKLTYFSK 805 (857)
Q Consensus 790 ~~L~l~~c~~l~~ip~ 805 (857)
+.|++++|+ +...|.
T Consensus 175 ~~L~l~~N~-~~~~~~ 189 (263)
T 1xeu_A 175 NWIDLTGQK-CVNEPV 189 (263)
T ss_dssp CEEEEEEEE-EECCCE
T ss_pred CEEeCCCCc-ccCCcc
Confidence 999999984 444443
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.15 E-value=3.9e-12 Score=137.12 Aligned_cols=15 Identities=27% Similarity=0.745 Sum_probs=8.2
Q ss_pred CCCCCCCCeEEeecC
Q 003013 641 LHNLHHLQKISIADC 655 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c 655 (857)
+..+++|++|++++|
T Consensus 240 l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 240 LKSWPNLRELGLNDC 254 (386)
T ss_dssp GGGCTTCCEEECTTC
T ss_pred HccCCCcCEEECCCC
Confidence 344555555665555
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=2.8e-10 Score=128.39 Aligned_cols=167 Identities=15% Similarity=0.193 Sum_probs=89.2
Q ss_pred CCCCceEEecCCcccceeehhhhhhcCCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhC
Q 003013 329 DLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALL 408 (857)
Q Consensus 329 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~ 408 (857)
.++.|+.|.+.++. +..++ .+..+++|+.|+++++. +..++. +..+ ++|++|+|++|. +..+| .+.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~--~l~~l~~L~~L~Ls~N~-l~~~~~-------l~~l-~~L~~L~Ls~N~-l~~l~-~l~ 106 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ--GIQYLPNVTKLFLNGNK-LTDIKP-------LTNL-KNLGWLFLDENK-IKDLS-SLK 106 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT--TGGGCTTCCEEECTTSC-CCCCGG-------GGGC-TTCCEEECCSSC-CCCCT-TST
T ss_pred cCCCCCEEECcCCC-CCCCh--HHccCCCCCEEEeeCCC-CCCChh-------hccC-CCCCEEECcCCC-CCCCh-hhc
Confidence 34555555555432 33333 13556666666666643 333221 3334 566666666653 34444 456
Q ss_pred CCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCCCCCCCccEE
Q 003013 409 TLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEIALPSQLRTV 488 (857)
Q Consensus 409 ~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 488 (857)
.+++|++|+|++| .+..++.+..+++|+.|+|++|. +..+ ..+.. +++|+.|+|++|. +..++.+..+++|+.|
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l-~~l~~--l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L 180 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI-TVLSR--LTKLDTLSLEDNQ-ISDIVPLAGLTKLQNL 180 (605)
T ss_dssp TCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCC-GGGGS--CTTCSEEECCSSC-CCCCGGGTTCTTCCEE
T ss_pred cCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCc-hhhcc--cCCCCEEECcCCc-CCCchhhccCCCCCEE
Confidence 6666666666665 44455555666666666666654 5554 22322 6666666666653 3333335566666666
Q ss_pred eccccccccccChhhhccCCCCccEEEecCC
Q 003013 489 RIQECNALKSLPEAWMHNSNSSLESLEIRSC 519 (857)
Q Consensus 489 ~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c 519 (857)
+|++| .+..+|. + ..+++|+.|++++|
T Consensus 181 ~Ls~N-~i~~l~~-l--~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 181 YLSKN-HISDLRA-L--AGLKNLDVLELFSQ 207 (605)
T ss_dssp ECCSS-CCCBCGG-G--TTCTTCSEEECCSE
T ss_pred ECcCC-CCCCChH-H--ccCCCCCEEEccCC
Confidence 66664 3444432 2 22566666666654
No 106
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.12 E-value=5.1e-11 Score=135.95 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=68.9
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCc-eEEEEeCCCCCHHHHHHHHHH
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEI-KAWTCVSEDFDVFGVSKFILN 223 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~-~~wv~vs~~~~~~~i~~~i~~ 223 (857)
.|||++..++|.++|... ++.++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...+...|++
T Consensus 130 ~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 499999999999999753 25789999999999999999999998889999997 899999999999999888887
Q ss_pred Hcc
Q 003013 224 SIA 226 (857)
Q Consensus 224 ~l~ 226 (857)
.+.
T Consensus 205 lL~ 207 (1221)
T 1vt4_I 205 LLY 207 (1221)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.11 E-value=8.3e-10 Score=108.80 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=58.0
Q ss_pred CcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeE
Q 003013 670 KLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLE 747 (857)
Q Consensus 670 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 747 (857)
+|++|+++++......|..+..+++|++|++++| .+..++.. ..+++|+.|++++|.. ..++...+..+++|++|+
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcC-CccChhHhCcchhhCeEe
Confidence 4444444443322222333444444444444444 23333322 2234444444444432 222222344555555555
Q ss_pred EcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCC
Q 003013 748 IWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCR 798 (857)
Q Consensus 748 l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~ 798 (857)
+++ +.+..+|. .+++|+.|++++ +.++.++... ..+++|+.|++++|+
T Consensus 119 Ls~--N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 119 MCC--NKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCS--SCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccC--CcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 554 23333333 234455555554 4666666443 667777778777775
No 108
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.08 E-value=1.4e-11 Score=104.40 Aligned_cols=48 Identities=25% Similarity=0.478 Sum_probs=44.4
Q ss_pred ChhhHHHHHHHHHhc--ccccHHHHHHHHHHHHHhhchhhHHHHHHHHHH
Q 003013 1 MLEMIQAVLADAEDR--QTREKSVKMWLDNLQNLAYDVQDVLDELETEAL 48 (857)
Q Consensus 1 ~l~~i~~~l~~ae~~--~~~~~~v~~Wl~~v~~~~~d~edv~d~~~~~~~ 48 (857)
.|++|+++|.||+++ +..+++|+.|+++||+++|||||++|+|.++..
T Consensus 34 eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 34 ELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999998 568999999999999999999999999999874
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.07 E-value=1.9e-09 Score=105.43 Aligned_cols=139 Identities=18% Similarity=0.279 Sum_probs=90.5
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccC
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
..++.+|..+. ++|+.|+++++ .+..++. .+..+++|++|+++++......|..+..+++|++|++++| .++.+|
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~ 96 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELP 96 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccC
Confidence 45667776553 68888888887 4556655 4566788888888886543334667788888888888887 466666
Q ss_pred CC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCcc
Q 003013 711 ED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLT 787 (857)
Q Consensus 711 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~ 787 (857)
.. ..+++|+.|++++|... .+....+..+++|++|++++ +.++.++... ..++
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~ 152 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYD-----------------------NKLQTIAKGTFSPLR 152 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS-----------------------SCCSCCCTTTTTTCT
T ss_pred HhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCC-----------------------CcCCEECHHHHhCCC
Confidence 54 33577777777777543 33333566666777777766 3455444332 4566
Q ss_pred ccCceeccCCC
Q 003013 788 SLKTLRLSYCR 798 (857)
Q Consensus 788 ~L~~L~l~~c~ 798 (857)
+|+.|++++|+
T Consensus 153 ~L~~L~L~~N~ 163 (220)
T 2v9t_B 153 AIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 66666666654
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.04 E-value=1.1e-09 Score=116.27 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=77.8
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCCCCC--CCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCCCCcc
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGL--PSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCPSVVS 708 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~ 708 (857)
..+..+|..+ .+.++.|+++++ .+..++.... .+++|++|+++++. +..++ ..+..+++|++|++++| .+..
T Consensus 28 ~~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~ 102 (361)
T 2xot_A 28 QQLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHT 102 (361)
T ss_dssp SCCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCE
T ss_pred CCcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCC-cCCc
Confidence 4566777655 356888888887 5666665433 67888888888865 55554 45778888888888887 4666
Q ss_pred cCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 709 FPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 709 l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
++.. ..+++|+.|++++|... .+....+..+++|++|++++
T Consensus 103 ~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCC
Confidence 6553 34578888888887653 33344567777777777776
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=2.8e-11 Score=128.99 Aligned_cols=78 Identities=12% Similarity=0.102 Sum_probs=38.8
Q ss_pred EEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCC------CCCCC-Ccceeeccccccccccc-hhhhc---CCCC
Q 003013 392 LELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPE------VALPS-QLRTVRIQECNALKSLP-EAWMY---NSNS 460 (857)
Q Consensus 392 L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~------~~~l~-~L~~L~l~~~~~l~~l~-~~~~~---~~l~ 460 (857)
+.++++.....+|..+....+|++|++++|. +...+. +..++ +|++|++++|. +.... ..+.. ...+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCC
Confidence 4455544433455555555567777777763 444331 23344 66666666654 44332 22221 0015
Q ss_pred CccEEEEecCC
Q 003013 461 SLESLKIRSCN 471 (857)
Q Consensus 461 ~L~~L~l~~~~ 471 (857)
+|++|++++|.
T Consensus 81 ~L~~L~Ls~n~ 91 (362)
T 3goz_A 81 NVTSLNLSGNF 91 (362)
T ss_dssp TCCEEECCSSC
T ss_pred CccEEECcCCc
Confidence 66666666553
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.02 E-value=4e-09 Score=103.86 Aligned_cols=135 Identities=27% Similarity=0.272 Sum_probs=101.6
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccC
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
..+..+|..+. ++|++|++++|..-...+..+..+++|++|+++++. ++.+|. .+..+++|++|++++| .++.++
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~ 104 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLP 104 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccC
Confidence 56777777553 889999999885433335566778899999999865 566664 4678999999999998 567776
Q ss_pred CC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCC
Q 003013 711 ED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMP 774 (857)
Q Consensus 711 ~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~ 774 (857)
.. ..+++|+.|++++|... .++. .+..+++|++|++++ +.+..++. .+++|+.|++.+++
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~--N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQ--NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hhHhCcchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCC--CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 54 45789999999998764 4433 567889999999997 46666664 46889999998843
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.99 E-value=2.8e-11 Score=128.98 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=39.4
Q ss_pred EeEcCCCCCCcCCC-CCCCCCcceeeccccccccccch-----hhhcCCCC-CccEEEEecCCCCCCCC--CCCC-----
Q 003013 416 MKILGCASLVSFPE-VALPSQLRTVRIQECNALKSLPE-----AWMYNSNS-SLESLKIRSCNSLVSFP--EIAL----- 481 (857)
Q Consensus 416 L~l~~~~~l~~~~~-~~~l~~L~~L~l~~~~~l~~l~~-----~~~~~~l~-~L~~L~l~~~~~~~~~~--~~~~----- 481 (857)
+.++++.....+|. .....+|++|++++|. +...+. .+.. ++ +|++|++++|. +.... .+..
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFAN--TPASVTSLNLSGNS-LGFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHT--CCTTCCEEECCSSC-GGGSCHHHHHHHHHTS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHh--CCCceeEEECcCCC-CCHHHHHHHHHHHhcc
Confidence 45555533333443 2334558888888776 665553 3333 55 67777777753 22221 1111
Q ss_pred CCCccEEeccccc
Q 003013 482 PSQLRTVRIQECN 494 (857)
Q Consensus 482 ~~~L~~L~l~~~~ 494 (857)
+++|++|++++|.
T Consensus 79 ~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 79 PANVTSLNLSGNF 91 (362)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCccEEECcCCc
Confidence 2566666666643
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.97 E-value=1.7e-09 Score=100.88 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=93.5
Q ss_pred CCCCceEEEccCCCCC-CcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccc-cchhhhcCCCCCc
Q 003013 385 LPCRLRFLELSYCQGL-TKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKS-LPEAWMYNSNSSL 462 (857)
Q Consensus 385 l~~~L~~L~L~~~~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~l~~L 462 (857)
.|++|++|++++|... ..+|..+..+++|++|++++|. +..++.+..+++|++|++++|. +.. +|..+.. +++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEK--LPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHH--CTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhh--CCCC
Confidence 3477888888887642 2677777888888888888874 5555667778888888888877 555 6666655 8888
Q ss_pred cEEEEecCCCCCCCC---CCCCCCCccEEeccccccccccCh---hhhccCCCCccEEEecCCCC
Q 003013 463 ESLKIRSCNSLVSFP---EIALPSQLRTVRIQECNALKSLPE---AWMHNSNSSLESLEIRSCDS 521 (857)
Q Consensus 463 ~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~lp~---~~~~~~l~~L~~L~l~~c~~ 521 (857)
++|++++| .+..++ .+..+++|+.|+++++ .+..+|. ... ..+++|+.|++++|..
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVF-KLLPQLTYLDGYDRED 159 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHH-TTCSSCCEETTEETTS
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHH-HhCccCcEecCCCCCh
Confidence 89988886 445543 4577888888888885 4556665 222 2378888888887643
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.96 E-value=7.9e-09 Score=100.96 Aligned_cols=144 Identities=19% Similarity=0.250 Sum_probs=90.2
Q ss_pred CeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEec
Q 003013 648 QKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVH 724 (857)
Q Consensus 648 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~ 724 (857)
+.++.+++ .++.+|..+. ++|+.|+++++. ++.++. .+..+++|++|++++|. +..++.. ..+++|++|+++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECC
Confidence 34555543 5666665443 477888887754 444443 56777777777777773 4444222 334556666666
Q ss_pred CCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCCCCCC
Q 003013 725 DLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYF 803 (857)
Q Consensus 725 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~i 803 (857)
+|... .++...+..+++|++|+++ + +.++.++... ..+++|+.|++++| .++.+
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~L~----------------------~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 143 (220)
T 2v9t_B 89 GNKIT-ELPKSLFEGLFSLQLLLLN----------------------A-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTI 143 (220)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECC----------------------S-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred CCcCC-ccCHhHccCCCCCCEEECC----------------------C-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEE
Confidence 55432 3333334445555555554 4 5677775443 78999999999999 78888
Q ss_pred CCCCc--cccccceeecCCc
Q 003013 804 SKEGL--PKSLLRLYINHCP 821 (857)
Q Consensus 804 p~~~l--~~~L~~L~i~~c~ 821 (857)
+...+ .++|+.|+++++|
T Consensus 144 ~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 144 AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSC
T ss_pred CHHHHhCCCCCCEEEeCCCC
Confidence 76433 3689999999876
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=1.5e-08 Score=98.24 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=105.0
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCccc
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSF 709 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l 709 (857)
..+..+|..+ .++|++|+++++ .+..++.. +..+++|++|+++++. ++.++. .+..+++|++|++++| .+..+
T Consensus 17 ~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 91 (208)
T 2o6s_A 17 QGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSL 91 (208)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCcc
Confidence 4555666544 468899999887 45566554 4577889999998854 556654 4578888999999888 45666
Q ss_pred CCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC----CCCCCCeEecCCCCCCcccCCCC
Q 003013 710 PED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP----FPASLTELWISFMPDLECLSSIG 783 (857)
Q Consensus 710 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~----~~~~L~~L~l~~~~~l~~l~~~~ 783 (857)
+.. ..+++|++|++++|.. ..++...+..+++|++|++++ +.+..++. .+++|+.|++++++- .
T Consensus 92 ~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~--N~l~~~~~~~~~~l~~L~~L~l~~N~~-------~ 161 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQ--NQLKSVPDGVFDRLTSLQYIWLHDNPW-------D 161 (208)
T ss_dssp CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS--SCCSCCCTTTTTTCTTCCEEECCSCCB-------C
T ss_pred CHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCC--CccceeCHHHhccCCCccEEEecCCCe-------e
Confidence 653 3467888888888765 344444567788888888887 24444443 356677777776421 1
Q ss_pred CCccccCceeccCCCCCCCCCC
Q 003013 784 ENLTSLKTLRLSYCRKLTYFSK 805 (857)
Q Consensus 784 ~~l~~L~~L~l~~c~~l~~ip~ 805 (857)
..+++|+.|+++.+..-..+|.
T Consensus 162 ~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTBBC
T ss_pred cCCCCHHHHHHHHHhCCceeec
Confidence 3456677777777654445554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.96 E-value=2.7e-09 Score=107.52 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=114.8
Q ss_pred CCCcceeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEe
Q 003013 620 NTSLEGIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLE 699 (857)
Q Consensus 620 ~~~L~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~ 699 (857)
..+|+.|++.++ .+..++ .+..+++|++|++++| .+..++. +..+++|++|++++|. ++.+|.. .. ++|++|+
T Consensus 40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCc-cCCcCcc-cc-CcccEEE
Confidence 467888888884 677887 6888999999999998 5667766 7788999999999965 6777653 33 9999999
Q ss_pred ecCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCC--CCCCCCCeEecCCCCCCc
Q 003013 700 IRRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPP--PFPASLTELWISFMPDLE 777 (857)
Q Consensus 700 l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~--~~~~~L~~L~l~~~~~l~ 777 (857)
+++| .+..++....+++|+.|++++|.... ++ .+..+++|++|+++++ .+..+. ..+++|+.|++++ +.+.
T Consensus 113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N--~i~~~~~l~~l~~L~~L~l~~-N~~~ 185 (263)
T 1xeu_A 113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGN--EITNTGGLTRLKKVNWIDLTG-QKCV 185 (263)
T ss_dssp CCSS-CCSBSGGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTS--CCCBCTTSTTCCCCCEEEEEE-EEEE
T ss_pred ccCC-ccCCChhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCC--cCcchHHhccCCCCCEEeCCC-Cccc
Confidence 9999 56777655678999999999997644 32 5788999999999983 444433 3678999999998 4555
Q ss_pred ccC
Q 003013 778 CLS 780 (857)
Q Consensus 778 ~l~ 780 (857)
..|
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 554
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.94 E-value=7.1e-09 Score=101.30 Aligned_cols=138 Identities=12% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCcccCC-C-CCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcc
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESFPE-E-GLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVS 708 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~ 708 (857)
..++.+|..+ .+.+++|+++++ .+..++. . +..+++|++|+++++. ++.++. .+..+++|++|++++| .+..
T Consensus 21 n~l~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N-~l~~ 95 (220)
T 2v70_A 21 QKLNKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN-RLEN 95 (220)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCC
T ss_pred CCcccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC-ccCc
Confidence 3444555433 234556666655 3444422 1 3345566666666543 333332 4555566666666555 2333
Q ss_pred cCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccC-CCCCC
Q 003013 709 FPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLS-SIGEN 785 (857)
Q Consensus 709 l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~ 785 (857)
++.. ..+++|++|++++|.... +.+..+..+++|++|+++ + +.++.++ .....
T Consensus 96 ~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~----------------------~-N~l~~~~~~~~~~ 151 (220)
T 2v70_A 96 VQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLY----------------------D-NQITTVAPGAFDT 151 (220)
T ss_dssp CCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECT----------------------T-SCCCCBCTTTTTT
T ss_pred cCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECC----------------------C-CcCCEECHHHhcC
Confidence 3332 223455555555544322 222234444444444444 4 4555553 23366
Q ss_pred ccccCceeccCCC
Q 003013 786 LTSLKTLRLSYCR 798 (857)
Q Consensus 786 l~~L~~L~l~~c~ 798 (857)
+++|+.|++++|+
T Consensus 152 l~~L~~L~L~~N~ 164 (220)
T 2v70_A 152 LHSLSTLNLLANP 164 (220)
T ss_dssp CTTCCEEECCSCC
T ss_pred CCCCCEEEecCcC
Confidence 6777777777664
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=1.8e-09 Score=100.71 Aligned_cols=134 Identities=14% Similarity=0.129 Sum_probs=82.1
Q ss_pred CCCCCeEEeecCCCCc--ccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcc-cCCC-CCCCCCC
Q 003013 644 LHHLQKISIADCPNLE--SFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVS-FPED-GFPTNLK 719 (857)
Q Consensus 644 l~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~~~L~ 719 (857)
.++|+.|++++|. +. .+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|. +.. +|.. ..+++|+
T Consensus 23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCC
Confidence 4677888888774 44 666666667778888887765 5555 556777778888887774 333 3332 2256677
Q ss_pred eEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCC----CCCCccccCceecc
Q 003013 720 SLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSS----IGENLTSLKTLRLS 795 (857)
Q Consensus 720 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~ 795 (857)
.|++++|..........+..+++|++|++++ +.++.++. ....+++|+.|+++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-----------------------N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFN-----------------------CEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCS-----------------------SGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeC-----------------------CcCcchHHHHHHHHHhCccCcEecCC
Confidence 7777766543211112455566666666665 35555554 23667778888887
Q ss_pred CCCCCCCCCC
Q 003013 796 YCRKLTYFSK 805 (857)
Q Consensus 796 ~c~~l~~ip~ 805 (857)
+| .+..+|.
T Consensus 156 ~n-~~~~~~~ 164 (168)
T 2ell_A 156 DR-EDQEAPD 164 (168)
T ss_dssp ET-TSCBCCS
T ss_pred CC-Chhhccc
Confidence 77 4455554
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.92 E-value=1.9e-09 Score=98.23 Aligned_cols=124 Identities=13% Similarity=0.172 Sum_probs=93.2
Q ss_pred CCceEEEccCCCCC-CcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccc-cchhhhcCCCCCccE
Q 003013 387 CRLRFLELSYCQGL-TKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKS-LPEAWMYNSNSSLES 464 (857)
Q Consensus 387 ~~L~~L~L~~~~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~l~~L~~ 464 (857)
++|++|++++|... ..+|..+..+++|++|++++| .+..++.++.+++|++|++++|. +.. +|..+.. +++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~--l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVLAEK--CPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHHHHH--CTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHHhhh--CCCCCE
Confidence 77888888887643 378887888999999999988 56666777888999999999887 555 7776665 889999
Q ss_pred EEEecCCCCCCC---CCCCCCCCccEEeccccccccccCh---hhhccCCCCccEEEec
Q 003013 465 LKIRSCNSLVSF---PEIALPSQLRTVRIQECNALKSLPE---AWMHNSNSSLESLEIR 517 (857)
Q Consensus 465 L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~lp~---~~~~~~l~~L~~L~l~ 517 (857)
|++++|. +..+ ..+..+++|++|+++++ .+..+|. .... .+++|+.|+++
T Consensus 93 L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~-~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFK-LLPQLTYLDGY 148 (149)
T ss_dssp EECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHH-HCTTCCEETTB
T ss_pred EECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHH-HCCCcccccCC
Confidence 9998865 4543 34577889999999886 4566665 2222 26888888765
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=1.2e-08 Score=99.66 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=98.4
Q ss_pred CeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc--ccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEe
Q 003013 648 QKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP--NCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKV 723 (857)
Q Consensus 648 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l 723 (857)
+.++++++ .++.+|..+. +.+++|+++++. ++.++ ..+..+++|++|+++++ .++.++.. ..+++|++|++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEEC
Confidence 46777765 5677776543 367888888854 55553 23677888888888887 45555542 44577777777
Q ss_pred cCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCC-CCCCccccCceeccCCCCCCC
Q 003013 724 HDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSS-IGENLTSLKTLRLSYCRKLTY 802 (857)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~ 802 (857)
++|.. ..++...+..+++|++|++++ +.++.++. ....+++|+.|++++| .++.
T Consensus 89 s~N~l-~~~~~~~~~~l~~L~~L~Ls~-----------------------N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 143 (220)
T 2v70_A 89 TSNRL-ENVQHKMFKGLESLKTLMLRS-----------------------NRITCVGNDSFIGLSSVRLLSLYDN-QITT 143 (220)
T ss_dssp CSSCC-CCCCGGGGTTCSSCCEEECTT-----------------------SCCCCBCTTSSTTCTTCSEEECTTS-CCCC
T ss_pred CCCcc-CccCHhHhcCCcCCCEEECCC-----------------------CcCCeECHhHcCCCccCCEEECCCC-cCCE
Confidence 77765 333333456666666666665 56776643 3478999999999999 7777
Q ss_pred CCCCCc--cccccceeecCCc
Q 003013 803 FSKEGL--PKSLLRLYINHCP 821 (857)
Q Consensus 803 ip~~~l--~~~L~~L~i~~c~ 821 (857)
++...+ .++|+.|+++++|
T Consensus 144 ~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 144 VAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp BCTTTTTTCTTCCEEECCSCC
T ss_pred ECHHHhcCCCCCCEEEecCcC
Confidence 744322 3689999999876
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.88 E-value=1.4e-08 Score=98.52 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=121.6
Q ss_pred CCcceeeccCcCCccccCc-CCCCCCCCCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcc-cCCCCCCccE
Q 003013 621 TSLEGIFIYELENLKSLPA-GLHNLHHLQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPN-CMHNLTSLLN 697 (857)
Q Consensus 621 ~~L~~l~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~ 697 (857)
.+++.|++++ ..+..++. .+..+++|++|+++++ .+..++.. +..+++|++|+++++. ++.++. .+..+++|++
T Consensus 28 ~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 28 AQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp TTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCcEEEcCC-CccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence 4678888887 45666655 4678999999999997 56677664 4678999999999975 556665 4689999999
Q ss_pred EeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCC
Q 003013 698 LEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPD 775 (857)
Q Consensus 698 L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~ 775 (857)
|++++| .+..++.. ..+++|+.|++++|... .++...+..+++|++|++++ + .+...+++|+.|+++.+..
T Consensus 105 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~-N----~~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 105 LALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHD-N----PWDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp EECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS-C----CBCCCTTTTHHHHHHHHHC
T ss_pred EEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecC-C----CeecCCCCHHHHHHHHHhC
Confidence 999998 56677664 45689999999998654 45555678899999999998 3 2334567889998888554
Q ss_pred CcccCCCCCCccccCceeccCC
Q 003013 776 LECLSSIGENLTSLKTLRLSYC 797 (857)
Q Consensus 776 l~~l~~~~~~l~~L~~L~l~~c 797 (857)
-..+|...+.++. ++..|
T Consensus 178 ~g~ip~~~~~l~~----~~~~C 195 (208)
T 2o6s_A 178 SGVVRNSAGSVAP----DSAKC 195 (208)
T ss_dssp TTTBBCTTSSBCT----TCSBB
T ss_pred CceeeccCccccC----Ccccc
Confidence 4577755554444 44555
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=5.5e-09 Score=109.45 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=35.1
Q ss_pred CcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCC--CCCCCCC-eEEecCCCCcccccccccCCCCCccE
Q 003013 670 KLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLK-SLKVHDLKISKALLEWGSNRFTSLRK 745 (857)
Q Consensus 670 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~-~L~l~~~~~~~~~~~~~~~~l~~L~~ 745 (857)
+|+.|++.++. ++.+|. .|.++++|+.|.+.++ ++.++.. ..+++|+ .+.+.+ .+..+....+.++++|++
T Consensus 227 ~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 227 NLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp TCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEE
T ss_pred CCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCE
Confidence 44444444322 333332 3444555555555443 4444433 1234444 444444 233444445666666666
Q ss_pred eEEcC
Q 003013 746 LEIWG 750 (857)
Q Consensus 746 L~l~~ 750 (857)
+++.+
T Consensus 302 l~l~~ 306 (329)
T 3sb4_A 302 VLATG 306 (329)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66654
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.81 E-value=8.4e-11 Score=131.91 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCCCCcceeeccccccccccchhhhcCCCCCccEEEEec
Q 003013 431 ALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRS 469 (857)
Q Consensus 431 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~ 469 (857)
..++.|+.|+++++. ++.+|..+.. +++|+.|++++
T Consensus 346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~--l~~L~~L~l~~ 381 (567)
T 1dce_A 346 ATDEQLFRCELSVEK-STVLQSELES--CKELQELEPEN 381 (567)
T ss_dssp STTTTSSSCCCCHHH-HHHHHHHHHH--HHHHHHHCTTC
T ss_pred ccCccceeccCChhh-HHhhHHHHHH--HHHHHHhcccc
Confidence 445666677777655 6667776666 66777766643
No 125
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.80 E-value=8.4e-09 Score=117.79 Aligned_cols=100 Identities=20% Similarity=0.271 Sum_probs=71.6
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccch-hccC-CceEEEEeCCCCCHHHHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRV-QRHY-EIKAWTCVSEDFDVFGVSKF 220 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~-~~~F-d~~~wv~vs~~~~~~~i~~~ 220 (857)
..+|||+...++|.++|.... ++.++|+|+||||+||||||++++++.++ ..+| +.++|+++++. +...+...
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 448999999999999996532 36799999999999999999999998666 7889 58999999875 33334333
Q ss_pred H---HHHccCCC---CCCCCChHHHHHHHHhhc
Q 003013 221 I---LNSIAKDQ---SNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 221 i---~~~l~~~~---~~~~~~~~~~~~~l~~~l 247 (857)
+ +..++... .....+.+.+...++..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 231 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILM 231 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHH
Confidence 3 34444211 113455566666665543
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.78 E-value=3.3e-08 Score=104.94 Aligned_cols=124 Identities=18% Similarity=0.187 Sum_probs=81.6
Q ss_pred CCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCC--CCCCCC
Q 003013 643 NLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPED--GFPTNL 718 (857)
Q Consensus 643 ~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L 718 (857)
.+++|+.|++++| .+..++. .+..+++|++|+++++. ++.++. .+..+++|++|++++|. +..++.. ..+++|
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L 138 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQL 138 (361)
T ss_dssp CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTC
T ss_pred cccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccC
Confidence 6888888888887 5666654 46678888888888865 555554 57788888888888884 5555432 446888
Q ss_pred CeEEecCCCCccccccccc---CCCCCccEeEEcCCCCCCCCCCC----CCCC--CCeEecCC
Q 003013 719 KSLKVHDLKISKALLEWGS---NRFTSLRKLEIWGPCPDLVSPPP----FPAS--LTELWISF 772 (857)
Q Consensus 719 ~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~----~~~~--L~~L~l~~ 772 (857)
+.|++++|... .++...+ ..+++|+.|++++ +.+..++. .++. ++.|++.+
T Consensus 139 ~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~--N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 139 QKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSS--NKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CEEECCSSCCC-SCCGGGTC----CTTCCEEECCS--SCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCC--CCCCccCHHHhhhccHhhcceEEecC
Confidence 88888888653 3333333 4678888888886 34555443 1222 35566655
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.76 E-value=1.8e-08 Score=94.64 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=79.5
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhh-hcCCCCCccEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAW-MYNSNSSLESL 465 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~~l~~L~~L 465 (857)
.+|++|++++|. +..+|......++|++|++++| .+..++.++.+++|++|++++|. +..+|..+ .. +++|++|
T Consensus 19 ~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~--l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQA--LPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCHHHH--CTTCCEE
T ss_pred CCceEEEeeCCC-CchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-ccccCcchhhc--CCCCCEE
Confidence 567777777653 3455542222337777777776 45555666777778888887766 66666544 44 7788888
Q ss_pred EEecCCCCCCCCC---CCCCCCccEEeccccccccccChh----hhccCCCCccEEEecCCC
Q 003013 466 KIRSCNSLVSFPE---IALPSQLRTVRIQECNALKSLPEA----WMHNSNSSLESLEIRSCD 520 (857)
Q Consensus 466 ~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~lp~~----~~~~~l~~L~~L~l~~c~ 520 (857)
++++|. +..+|. +..+++|+.|+++++. +..+|.. +.. +++|+.|+++++.
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~--l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYK--VPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHH--CTTCSEETTEECC
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHH--CCccceeCCCcCC
Confidence 887753 455553 4567778888887754 4455553 332 6777777776643
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=6.8e-09 Score=94.52 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCCeEEeecCCCCc--ccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcc-cCCC-CCCCCCCe
Q 003013 645 HHLQKISIADCPNLE--SFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVS-FPED-GFPTNLKS 720 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~--~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~~~L~~ 720 (857)
++|+.|++++|. +. .+|..+..+++|++|++++|. ++.+ ..+..+++|++|++++|. +.. +|.. ..+++|++
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence 455666666553 33 455544555566666665543 3333 345555566666665553 222 2221 11344555
Q ss_pred EEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 721 LKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 721 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
|++++|..........+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 555554432211112344444555555544
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.72 E-value=9.5e-08 Score=90.95 Aligned_cols=96 Identities=17% Similarity=0.265 Sum_probs=47.4
Q ss_pred eEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCC
Q 003013 649 KISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDL 726 (857)
Q Consensus 649 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~ 726 (857)
.++++++ .+..+|..+. ++|++|+++++. ++.+|..+..+++|++|+++++ .+..++.. ..+++|+.|++++|
T Consensus 14 ~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNK-GLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTS-CCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCC-CCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 3444433 3445554332 356666666533 4555555556666666666665 34444332 22355555555555
Q ss_pred CCcccccccccCCCCCccEeEEcC
Q 003013 727 KISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 727 ~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
.. ..++...+..+++|++|++++
T Consensus 89 ~l-~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 89 RL-RCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp CC-CBCCTTTTTTCTTCCEEECCS
T ss_pred cc-CEeCHHHhCCCCCCCEEECCC
Confidence 43 222222445555555555554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.66 E-value=1.8e-08 Score=94.55 Aligned_cols=65 Identities=11% Similarity=0.201 Sum_probs=36.7
Q ss_pred CCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccC
Q 003013 642 HNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 642 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
..+++|+.|++++| .+..++......++|++|++++|. ++.+ ..+..+++|++|++++| .+..+|
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~ 80 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRIG 80 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEEC
T ss_pred CCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-cccccC
Confidence 34567777777776 444554322223367777777653 4444 34566666666666666 344444
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.65 E-value=2.2e-07 Score=88.37 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=81.8
Q ss_pred CeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCc
Q 003013 359 NRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPE--VALPSQL 436 (857)
Q Consensus 359 ~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L 436 (857)
+++++++ ..+..+|.. +|.+|++|++++|. +..+|..+..+++|++|++++| .+..++. +..+++|
T Consensus 13 ~~l~~~~-~~l~~ip~~---------~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKG---------IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQL 80 (193)
T ss_dssp TEEECTT-SCCSSCCSC---------CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred CEEEcCC-CCCCcCCCC---------CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCC
Confidence 4566665 335555432 34788888888864 5678888888889999999887 4555543 6678888
Q ss_pred ceeeccccccccccchh-hhcCCCCCccEEEEecCCCCCCCCC--CCCCCCccEEeccccc
Q 003013 437 RTVRIQECNALKSLPEA-WMYNSNSSLESLKIRSCNSLVSFPE--IALPSQLRTVRIQECN 494 (857)
Q Consensus 437 ~~L~l~~~~~l~~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 494 (857)
++|+++++. ++.++.. +.. +++|++|++++| .+..++. +..+++|+.|++++++
T Consensus 81 ~~L~Ls~N~-l~~i~~~~f~~--l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 81 LTLILSYNR-LRCIPPRTFDG--LKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSC-CCBCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCc-cCEeCHHHhCC--CCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 888888876 6666653 333 788888888775 3445553 3556777777777643
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.60 E-value=4.6e-07 Score=85.05 Aligned_cols=103 Identities=25% Similarity=0.351 Sum_probs=51.0
Q ss_pred CcceEeeccccCcccCcc-cCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEe
Q 003013 670 KLTELSIRECENLKALPN-CMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKL 746 (857)
Q Consensus 670 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 746 (857)
+|++|+++++. ++.++. .+..+++|++|++++| .+..++.. ..+++|+.|++++|... .++...+..+++|++|
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEE
Confidence 55555555533 333332 2345555666655555 33444332 22344555555444332 2222233444555555
Q ss_pred EEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCC
Q 003013 747 EIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCR 798 (857)
Q Consensus 747 ~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~ 798 (857)
++++ +.++.++... ..+++|+.|++++|+
T Consensus 106 ~l~~-----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 106 ALDT-----------------------NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCS-----------------------SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECcC-----------------------CcceEeCHHHhcCCcccCEEEecCCC
Confidence 5554 4555565544 567777777777774
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.58 E-value=3.3e-07 Score=87.23 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=81.3
Q ss_pred eeeccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCCC--CCCCCCcceEeeccccCcccCcccCCCCCCccEEeecC
Q 003013 625 GIFIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPEE--GLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRR 702 (857)
Q Consensus 625 ~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 702 (857)
.+++++ ..++.+|..+. ++|++|+++++ .+..++.. +..+++|++|+++++......|..+..+++|++|++++
T Consensus 12 ~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTG-RGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTT-SCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCC-CCcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 344444 56677776553 48888888887 56666553 55678888888888654333466788888888888888
Q ss_pred CCCCcccCCC--CCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 703 CPSVVSFPED--GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 703 c~~l~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
+ .++.++.. ..+++|++|++++|..... .+..+..+++|++|++++
T Consensus 88 N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 88 N-KIKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp C-CCCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTT
T ss_pred C-cCCccCHHHhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCC
Confidence 7 45555543 3457888888888765433 233566777777777776
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.57 E-value=3.9e-07 Score=86.68 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=67.9
Q ss_pred CeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcc--cCCCCCCccEEeecCCCCCccc-CCC-CCCCCCCeEEe
Q 003013 648 QKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPN--CMHNLTSLLNLEIRRCPSVVSF-PED-GFPTNLKSLKV 723 (857)
Q Consensus 648 ~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~l-~~~-~~~~~L~~L~l 723 (857)
+.++++++ .++.+|..+.. +|++|+++++. ++.++. .+..+++|++|+++++ .+..+ |.. ..+++|++|++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEEC
Confidence 67888776 56788875543 89999999864 666654 3778899999999888 45555 332 44678888888
Q ss_pred cCCCCcccccccccCCCCCccEeEEcC
Q 003013 724 HDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 724 ~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
++|... .++...+..+++|++|++++
T Consensus 86 s~N~l~-~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 86 GENKIK-EISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp CSCCCC-EECSSSSTTCTTCCEEECCS
T ss_pred CCCcCC-ccCHHHhcCCCCCCEEECCC
Confidence 887653 33333566777777777776
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=7.1e-06 Score=87.60 Aligned_cols=163 Identities=10% Similarity=0.150 Sum_probs=88.4
Q ss_pred CCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCCC----CcccCCC--C
Q 003013 641 LHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCPS----VVSFPED--G 713 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~----l~~l~~~--~ 713 (857)
+.++++|+.+.+.. .+..++.....-.+|+.+.+.+ .++.++ ..|.++++|+.+.+.++.. +..++.. .
T Consensus 222 F~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 222 FLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 44556666666654 3555555433335666666632 344443 3556677777777655421 1123322 1
Q ss_pred CCCCCCeEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcccCCCC-CCccccCce
Q 003013 714 FPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLECLSSIG-ENLTSLKTL 792 (857)
Q Consensus 714 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L 792 (857)
.+++|+.+.+.+ .+..+....+.++++|+.+.|.. +++.+.... .+| +|+++
T Consensus 298 ~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~------------------------~l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 298 GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA------------------------NVTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT------------------------TCCEECTTSSSSS-CCCEE
T ss_pred CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc------------------------cccEEcHHhCCCC-CCCEE
Confidence 234455555442 23344444455555555555533 466666555 677 89999
Q ss_pred eccCCCCCCCCCCC---CccccccceeecCCcchHHhhcCCCCCCCCccc
Q 003013 793 RLSYCRKLTYFSKE---GLPKSLLRLYINHCPLIEERCRKDEGKYWPMIS 839 (857)
Q Consensus 793 ~l~~c~~l~~ip~~---~l~~~L~~L~i~~c~~l~~~~~~~~g~~w~~i~ 839 (857)
++.++ .+..++.. +++.+++.|++-.- -.+.|+. ...|...+
T Consensus 351 ~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~--~~~~y~~--a~~W~~f~ 395 (401)
T 4fdw_A 351 KVEGT-TPPQVFEKVWYGFPDDITVIRVPAE--SVEKYKN--ANGWRDFT 395 (401)
T ss_dssp EECCS-SCCBCCCSSCCCSCTTCCEEEECGG--GHHHHHH--STTGGGGG
T ss_pred EEcCC-CCcccccccccCCCCCccEEEeCHH--HHHHhhh--ccchhhhh
Confidence 99887 55555553 45567888887653 2445543 34577654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.54 E-value=8e-07 Score=83.36 Aligned_cols=102 Identities=22% Similarity=0.326 Sum_probs=55.8
Q ss_pred CCceEEEccCCCCCCcch-hhhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLP-QALLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~ 463 (857)
.+|++|++++|.. ..+| ..+..+++|++|++++| .+..++. ++.+++|++|+++++. ++.++.... ..+++|+
T Consensus 28 ~~l~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~-~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVF-DKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCC-CCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred CCCcEEEeCCCcc-cEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC-ccccCHHHh-hCCcccC
Confidence 5666777776543 3443 33466677777777665 3444442 3456666666666654 555554321 1256666
Q ss_pred EEEEecCCCCCCCCC--CCCCCCccEEecccc
Q 003013 464 SLKIRSCNSLVSFPE--IALPSQLRTVRIQEC 493 (857)
Q Consensus 464 ~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~ 493 (857)
+|++++| .+..++. +..+++|++|+++++
T Consensus 104 ~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 104 ELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence 6666654 3334442 234555566665554
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=1.4e-07 Score=98.65 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=88.1
Q ss_pred CCCCCeEEeecCCCCcccCCC-CCCCCCcceEeeccccCcccCcccCCCCCCccEEeecC-----------------CCC
Q 003013 644 LHHLQKISIADCPNLESFPEE-GLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRR-----------------CPS 705 (857)
Q Consensus 644 l~~L~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~-----------------c~~ 705 (857)
+++|+.|.+.+ .++.++.. +..+++|+.|++.++.....-+..|..+.++..+.... |..
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 77788888876 56667654 44577888888876443222223444555554443322 222
Q ss_pred Ccc---------cCC-----------------C------------CCCCCCCeEEecCCCCcccccccccCCCCCccEeE
Q 003013 706 VVS---------FPE-----------------D------------GFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLE 747 (857)
Q Consensus 706 l~~---------l~~-----------------~------------~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 747 (857)
++. ++. . ..+++|+.+++.+|. +..++...+.++++|++|+
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEE
Confidence 210 000 0 014667777777654 3555566677777777777
Q ss_pred EcCCCCCCCCCCC----CCCCCC-eEecCCCCCCcccCCCC-CCccccCceeccCCCCCCCCCCCCc
Q 003013 748 IWGPCPDLVSPPP----FPASLT-ELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRKLTYFSKEGL 808 (857)
Q Consensus 748 l~~~~~~l~~~~~----~~~~L~-~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~ip~~~l 808 (857)
+.+ ++..++. .+++|+ .+.+.+ +++.++... .+|++|++|++.++ .++.|+...+
T Consensus 257 l~~---ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF 317 (329)
T 3sb4_A 257 LPH---NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELF 317 (329)
T ss_dssp CCT---TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTT
T ss_pred CCc---ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccchhhh
Confidence 765 2444443 456666 676666 566666544 66777777776655 5666665433
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.48 E-value=9.7e-08 Score=110.73 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=58.8
Q ss_pred CCCCCCcceEeeccccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCCeEEecCCCCcccccccccCCCCCc
Q 003013 665 GLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLKSLKVHDLKISKALLEWGSNRFTSL 743 (857)
Q Consensus 665 ~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 743 (857)
+..+++|+.|++++|. +..+|..+..+++|++|+|++| .+..+|.. +.+++|+.|+|++|... .++. .+..+++|
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLT-SLPA-ELGSCFQL 295 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCS-SCCS-SGGGGTTC
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCC-ccCh-hhcCCCCC
Confidence 3444455555555533 3344444445555555555555 33344432 23445555555555432 2222 34555555
Q ss_pred cEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcc-cCCCCCCc-cccCceeccCCCCCCCCCCCCccccccceeec
Q 003013 744 RKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLEC-LSSIGENL-TSLKTLRLSYCRKLTYFSKEGLPKSLLRLYIN 818 (857)
Q Consensus 744 ~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~-l~~~~~~l-~~L~~L~l~~c~~l~~ip~~~l~~~L~~L~i~ 818 (857)
++|+|++ +.+..+|. .+++|+.|+|++ +.++. +|.....+ ..+..|++++|..-. .+|..|..|++.
T Consensus 296 ~~L~L~~--N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-----~~p~~l~~l~l~ 367 (727)
T 4b8c_D 296 KYFYFFD--NMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRPEI-----PLPHERRFIEIN 367 (727)
T ss_dssp SEEECCS--SCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-----CCCCC-------
T ss_pred CEEECCC--CCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcccC-----cCccccceeEee
Confidence 5555554 23334443 234555555555 33442 23111111 112235566663221 245567777776
Q ss_pred CC
Q 003013 819 HC 820 (857)
Q Consensus 819 ~c 820 (857)
.+
T Consensus 368 ~n 369 (727)
T 4b8c_D 368 TD 369 (727)
T ss_dssp --
T ss_pred cc
Confidence 65
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.48 E-value=4.8e-09 Score=100.80 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=68.7
Q ss_pred CCcchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCCCC
Q 003013 400 LTKLPQALLTLCSLTDMKILGCASLVSFPEVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFPEI 479 (857)
Q Consensus 400 l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 479 (857)
++.+|..+..+++|++|++++| .+..+|.+..+++|++|++++|. ++.+|..+.. +++|++|++++| .+..+|.+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~~--~~~L~~L~L~~N-~l~~l~~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNL-IKKIENLDAV--ADTLEELWISYN-QIASLSGI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEE-ECSCSSHHHH--HHHCSEEEEEEE-ECCCHHHH
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCC-cccccchhhc--CCcCCEEECcCC-cCCcCCcc
Confidence 4555666666777777777665 45556655556677777777665 5666665544 566777777665 34445555
Q ss_pred CCCCCccEEeccccccccccChhhhccCCCCccEEEecCCC
Q 003013 480 ALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIRSCD 520 (857)
Q Consensus 480 ~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~~c~ 520 (857)
..+++|+.|+++++ .+..++..-....+++|+.|++++++
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 55666777777663 34444431111225677777777653
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=3.4e-07 Score=102.66 Aligned_cols=121 Identities=18% Similarity=0.136 Sum_probs=84.6
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCC-CCCCCCCcceeeccccccccccchhhhcCCCCCccEE
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFP-EVALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESL 465 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L 465 (857)
..|++|+|++| .+..+|. ++.+++|++|++++| .+..+| .++.+++|++|+|+++. ++.+| .+.. +++|++|
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~--l~~L~~L 513 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD-GVAN--LPRLQEL 513 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTT--CSSCCEE
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc-ccCC--CCCCcEE
Confidence 45788888886 4566776 888888888888887 455666 46778888888888876 77777 4444 8888888
Q ss_pred EEecCCCCCCC--C-CCCCCCCccEEeccccccccccChhhh--ccCCCCccEEEe
Q 003013 466 KIRSCNSLVSF--P-EIALPSQLRTVRIQECNALKSLPEAWM--HNSNSSLESLEI 516 (857)
Q Consensus 466 ~l~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~l~~lp~~~~--~~~l~~L~~L~l 516 (857)
++++|. +..+ | .+..+++|+.|+++++ .+..+|+... ...+++|+.|++
T Consensus 514 ~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCNNR-LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCSSC-CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCCCC-CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 888764 4444 4 4577888888888885 4555554321 122678888753
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.43 E-value=2.3e-07 Score=107.54 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=86.0
Q ss_pred CCCCeEEeecCCCCcccCCCCCCCCCcceEeecc----ccCcccCcccCCCCCCccEEeecCCCCCcccCCC-CCCCCCC
Q 003013 645 HHLQKISIADCPNLESFPEEGLPSTKLTELSIRE----CENLKALPNCMHNLTSLLNLEIRRCPSVVSFPED-GFPTNLK 719 (857)
Q Consensus 645 ~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~----c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~ 719 (857)
+.++.|++.++ .+...+........|..+.|.. ++.+...+..+..+++|+.|+|++|. +..+|.. ..+++|+
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSC-CSCCCGGGGGCCSCS
T ss_pred CccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCC
Confidence 45666666554 3333443333333444444432 23344556678899999999999984 5677754 4578999
Q ss_pred eEEecCCCCcccccccccCCCCCccEeEEcCCCCCCCCCCC---CCCCCCeEecCCCCCCcccCCCCCCccccCceeccC
Q 003013 720 SLKVHDLKISKALLEWGSNRFTSLRKLEIWGPCPDLVSPPP---FPASLTELWISFMPDLECLSSIGENLTSLKTLRLSY 796 (857)
Q Consensus 720 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~l~~~~~---~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~ 796 (857)
.|+|++|... .++ ..+..+++|++|+|++ +.+..+|. .+++|++|++++ +.++.+|..+..+++|+.|++++
T Consensus 251 ~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 251 RLYLNGNSLT-ELP-AEIKNLSNLRVLDLSH--NRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCBCTTSCCS-CCC-GGGGGGTTCCEEECTT--SCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSSTTSCTTCCCEECTT
T ss_pred EEEeeCCcCc-ccC-hhhhCCCCCCEEeCcC--CcCCccChhhcCCCCCCEEECCC-CCCCccChhhhcCCCccEEeCCC
Confidence 9999999765 554 3678999999999998 45667776 468899999999 57899998888999999999999
Q ss_pred CCC
Q 003013 797 CRK 799 (857)
Q Consensus 797 c~~ 799 (857)
|+.
T Consensus 326 N~l 328 (727)
T 4b8c_D 326 NPL 328 (727)
T ss_dssp SCC
T ss_pred Ccc
Confidence 953
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.43 E-value=3.3e-05 Score=82.44 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=32.2
Q ss_pred cCCCCCCccEEeecCCCCCcccCCCC--CCCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 688 CMHNLTSLLNLEIRRCPSVVSFPEDG--FPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 688 ~~~~l~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
.|.+|++|+.+.+.+ .++.++... .+.+|+.+.+..+ +..+....+.++ +|+++.+.+
T Consensus 295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECC
T ss_pred HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcC
Confidence 445566666666652 345554442 2355666666433 444444566666 777777766
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.37 E-value=1.6e-06 Score=80.78 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=42.5
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchh-hhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEA-WMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~l~~L~ 463 (857)
.+|++|+|++|......|..+..+++|++|+|++| .+..+|. +..+++|++|+|+++. ++.+|.. +.. +++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~--l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDN--LKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--CTTCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc-cceeCHHHhcc--ccCCC
Confidence 56666666665433333455666666666666665 4444443 2445566666665544 4555543 222 55555
Q ss_pred EEEEecC
Q 003013 464 SLKIRSC 470 (857)
Q Consensus 464 ~L~l~~~ 470 (857)
+|+++++
T Consensus 109 ~L~L~~N 115 (174)
T 2r9u_A 109 HIYLYNN 115 (174)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 5555554
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.32 E-value=2.4e-06 Score=79.27 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=43.5
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchh-hhcCCCCCcc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEA-WMYNSNSSLE 463 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~l~~L~ 463 (857)
.+|++|+|++|......|..+..+++|++|++++| .+..++. +..+++|++|+++++. ++.++.. +.. +++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN--LKSLT 105 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT--CTTCC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC--CCCCC
Confidence 56666666665432333555666666666666665 3444442 3445666666666554 5555543 222 55555
Q ss_pred EEEEecC
Q 003013 464 SLKIRSC 470 (857)
Q Consensus 464 ~L~l~~~ 470 (857)
+|+++++
T Consensus 106 ~L~L~~N 112 (170)
T 3g39_A 106 HIWLLNN 112 (170)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 5555554
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.28 E-value=3.4e-09 Score=101.86 Aligned_cols=125 Identities=18% Similarity=0.131 Sum_probs=80.0
Q ss_pred CcceeeccCc-CCccccCcCCCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccCCCCCCccEEee
Q 003013 622 SLEGIFIYEL-ENLKSLPAGLHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCMHNLTSLLNLEI 700 (857)
Q Consensus 622 ~L~~l~l~~~-~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l 700 (857)
.++...+.+. +.++.+|..+..+++|++|++++| .+..+| .+..+++|++|++++|. ++.+|..+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC
Confidence 4444444432 345666667777888888888877 455566 55566788888888764 5667766666778888888
Q ss_pred cCCCCCcccCCCCCCCCCCeEEecCCCCcccccccccCCCCCccEeEEcC
Q 003013 701 RRCPSVVSFPEDGFPTNLKSLKVHDLKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 701 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
++| .+..+|....+++|+.|++++|..........+..+++|++|++++
T Consensus 101 ~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 101 SYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred cCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 877 4555553334467777777777553311112455666777777766
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=0.00025 Score=75.95 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=20.4
Q ss_pred CCCCCCCceEEecCCcccceeehhhhhhcCCCCCeEecc
Q 003013 326 GPMDLSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIK 364 (857)
Q Consensus 326 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 364 (857)
+|.++.+|+.+.+.+ .+..+....|..+.+|+.+++.
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp 102 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIP 102 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeC
Confidence 445555666666542 3445555555666666666554
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.13 E-value=1.5e-05 Score=73.86 Aligned_cols=90 Identities=23% Similarity=0.322 Sum_probs=40.9
Q ss_pred CCccccCcCCCCCCCCCeEEeecCCCCccc-CCCCCCCCCcceEeeccccCcccCccc-CCCCCCccEEeecCCCCCccc
Q 003013 632 ENLKSLPAGLHNLHHLQKISIADCPNLESF-PEEGLPSTKLTELSIRECENLKALPNC-MHNLTSLLNLEIRRCPSVVSF 709 (857)
Q Consensus 632 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l 709 (857)
..++.+|..+ .++|++|+++++ .+..+ +..+..+++|++|+++++. ++.+|.. +..+++|++|+++++ .++.+
T Consensus 19 n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~ 93 (170)
T 3g39_A 19 KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QLKSI 93 (170)
T ss_dssp SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC
T ss_pred CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-ccCEe
Confidence 3444455433 255555555554 33333 3334445555555555533 3344332 345555555555554 33444
Q ss_pred CCC--CCCCCCCeEEecCC
Q 003013 710 PED--GFPTNLKSLKVHDL 726 (857)
Q Consensus 710 ~~~--~~~~~L~~L~l~~~ 726 (857)
+.. ..+++|+.|++++|
T Consensus 94 ~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCCCCCEEEeCCC
Confidence 332 22344444444444
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.11 E-value=0.00034 Score=74.87 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=10.0
Q ss_pred CcccCCCC-CCccccCceecc
Q 003013 776 LECLSSIG-ENLTSLKTLRLS 795 (857)
Q Consensus 776 l~~l~~~~-~~l~~L~~L~l~ 795 (857)
++.+.... .+|++|+++++.
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEE
T ss_pred ccEehHHHhhCCCCCCEEEEC
Confidence 44444333 455555555543
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.10 E-value=1.8e-05 Score=73.60 Aligned_cols=89 Identities=21% Similarity=0.318 Sum_probs=39.2
Q ss_pred CccccCcCCCCCCCCCeEEeecCCCCccc-CCCCCCCCCcceEeeccccCcccCccc-CCCCCCccEEeecCCCCCcccC
Q 003013 633 NLKSLPAGLHNLHHLQKISIADCPNLESF-PEEGLPSTKLTELSIRECENLKALPNC-MHNLTSLLNLEIRRCPSVVSFP 710 (857)
Q Consensus 633 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l~ 710 (857)
.+..+|..+. ++|++|+++++. +..+ |..+..+++|++|+++++ .++.+|.. +..+++|++|++++| .++.+|
T Consensus 23 ~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~ 97 (174)
T 2r9u_A 23 RLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIP 97 (174)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeC
Confidence 3444444332 555555555542 3333 223444555555555553 24444432 244555555555554 333333
Q ss_pred CC--CCCCCCCeEEecCC
Q 003013 711 ED--GFPTNLKSLKVHDL 726 (857)
Q Consensus 711 ~~--~~~~~L~~L~l~~~ 726 (857)
.. ..+++|+.|++++|
T Consensus 98 ~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp TTTTTTCTTCSEEECCSS
T ss_pred HHHhccccCCCEEEeCCC
Confidence 32 22344444444444
No 150
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.98 E-value=8.6e-06 Score=88.19 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=68.3
Q ss_pred CeeecchhHHHHHHHHH-hcCCCC--CCCCceEEEEeccCCcchHHHHHHHhcccchh---ccCC-ceEEEEeCCCCCHH
Q 003013 143 AKVYGREKEKEEIIELL-LNDDLR--ADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ---RHYE-IKAWTCVSEDFDVF 215 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L-~~~~~~--~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~---~~Fd-~~~wv~vs~~~~~~ 215 (857)
+.++||+++.+++..++ ...... .....-+|||+|++|+||||||+++++..... ..|+ .++|+......+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56999999999999988 421000 01133444559999999999999999853321 1123 24667766777888
Q ss_pred HHHHHHHHHccCCCCCCCCChHHHHHHHHhhc
Q 003013 216 GVSKFILNSIAKDQSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 216 ~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 247 (857)
.+.+.|+.+++........+...+...+.+.+
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 133 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNL 133 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999987653312334455555555544
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=2.8e-06 Score=77.45 Aligned_cols=40 Identities=5% Similarity=0.093 Sum_probs=19.7
Q ss_pred CCceEEEccCCCCCCcchhhhCCCCCCcEEeEcCCCCCCc
Q 003013 387 CRLRFLELSYCQGLTKLPQALLTLCSLTDMKILGCASLVS 426 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 426 (857)
.+|+.|++++|.....=-..+..+++|++|+|++|..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 3566666666642111122244555566666655554443
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=5.8e-06 Score=86.52 Aligned_cols=131 Identities=21% Similarity=0.202 Sum_probs=70.0
Q ss_pred CCCCCCCCeEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCcccC--CCCCCccEEeecCCCC-------Ccc---
Q 003013 641 LHNLHHLQKISIADCPNLESFPEEGLPSTKLTELSIRECENLKALPNCM--HNLTSLLNLEIRRCPS-------VVS--- 708 (857)
Q Consensus 641 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~c~~-------l~~--- 708 (857)
+..+|+|+.|.|++|..+ .++. ..+++|++|+|..|..-......+ ..+|+|++|+|+.+.+ +..
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 455788999998887433 3333 236788888887655211111112 3678888888753211 111
Q ss_pred cCCCCCCCCCCeEEecCCCCccccccc--ccCCCCCccEeEEcCCCCCCCCCCCCCCCCCeEecCCCCCCcc-----cCC
Q 003013 709 FPEDGFPTNLKSLKVHDLKISKALLEW--GSNRFTSLRKLEIWGPCPDLVSPPPFPASLTELWISFMPDLEC-----LSS 781 (857)
Q Consensus 709 l~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-----l~~ 781 (857)
+.....+++|+.|++.+|......... ....+ ++|++|+++. +.+.. ++.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~----------------------~~L~~LdLs~-n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL----------------------PQLETMDISA-GVLTDEGARLLLD 301 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSG----------------------GGCSEEECCS-SCCBHHHHHHHHT
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccC----------------------CCCCEEECCC-CCCChHHHHHHHh
Confidence 111122456666666665543211000 01123 4455555543 45554 343
Q ss_pred CCCCccccCceeccCC
Q 003013 782 IGENLTSLKTLRLSYC 797 (857)
Q Consensus 782 ~~~~l~~L~~L~l~~c 797 (857)
.+..+++|+.|++++|
T Consensus 302 ~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYN 317 (362)
T ss_dssp THHHHTTCSEEECCSB
T ss_pred hcccCCcceEEECCCC
Confidence 3356889999999888
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.87 E-value=0.0014 Score=70.12 Aligned_cols=120 Identities=17% Similarity=0.182 Sum_probs=52.3
Q ss_pred ceEEecCCcccceeehhhhhhcCCCCCeEeccCC--CCcccccccccccCCCCCCCCCceEEEccCCCCCCcch-hhhCC
Q 003013 333 LKSVDLVDIANEVVLAGLFEQDIISLNRLQIKGC--PRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTKLP-QALLT 409 (857)
Q Consensus 333 L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~lp-~~~~~ 409 (857)
|+++.+.+ .+..+....|..+.+|+.+.+.+. ..+..+... .+..- .+|+.+.+.. .+..++ ..+..
T Consensus 66 L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-----aF~~c-~~L~~i~~~~--~~~~I~~~aF~~ 135 (394)
T 4gt6_A 66 LTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQ-----AFMFC-SELTDIPILD--SVTEIDSEAFHH 135 (394)
T ss_dssp CCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTT-----TTTTC-TTCCBCGGGT--TCSEECTTTTTT
T ss_pred CEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechh-----hchhc-ccceeeccCC--ccceehhhhhhh
Confidence 55555543 244556666666666666665432 122222111 11111 2233322221 122222 23455
Q ss_pred CCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEe
Q 003013 410 LCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIR 468 (857)
Q Consensus 410 l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~ 468 (857)
+.+|+.+.+.. .+..++. +..+..|+.+.+.+ .++.+...... ..+|+.+.+.
T Consensus 136 c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip 190 (394)
T 4gt6_A 136 CEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIP 190 (394)
T ss_dssp CTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEEC
T ss_pred hcccccccccc--eeeeecccceecccccccccccc--eeeEecccccc--ccceeEEEEC
Confidence 56666666643 2333332 33355566665543 24444444333 3455555553
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=6.6e-06 Score=75.00 Aligned_cols=80 Identities=9% Similarity=0.091 Sum_probs=38.2
Q ss_pred CcceEeeccccCccc-CcccCCCCCCccEEeecCCCCCcccCCC---C---CCCCCCeEEecCCCCcccccccccCCCCC
Q 003013 670 KLTELSIRECENLKA-LPNCMHNLTSLLNLEIRRCPSVVSFPED---G---FPTNLKSLKVHDLKISKALLEWGSNRFTS 742 (857)
Q Consensus 670 ~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~l~~~---~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 742 (857)
+|+.|++++|. ++. --..+..+++|++|++++|..++...-. . ..++|++|++++|..++...-..+.++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 45555555544 211 1112345666666666666554432111 0 01356666666665544321123445566
Q ss_pred ccEeEEcC
Q 003013 743 LRKLEIWG 750 (857)
Q Consensus 743 L~~L~l~~ 750 (857)
|++|+|++
T Consensus 141 L~~L~L~~ 148 (176)
T 3e4g_A 141 LKYLFLSD 148 (176)
T ss_dssp CCEEEEES
T ss_pred CCEEECCC
Confidence 66666666
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.84 E-value=4e-05 Score=80.62 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=74.9
Q ss_pred eccCcCCccccCcCCCCCCCCCeEEeecCCCCcccCC-CCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCC
Q 003013 627 FIYELENLKSLPAGLHNLHHLQKISIADCPNLESFPE-EGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCP 704 (857)
Q Consensus 627 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~ 704 (857)
+.++.+.+..+|. +..+++|+.|+|+++..+..++. .+..+++|+.|+|+++. ++.++ ..|..+++|++|+|+++
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N- 90 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFN- 90 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSS-
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCC-
Confidence 3444336788888 88899999999997557777774 56778999999999965 65554 46788999999999998
Q ss_pred CCcccCCCCC-CCCCCeEEecCCCC
Q 003013 705 SVVSFPEDGF-PTNLKSLKVHDLKI 728 (857)
Q Consensus 705 ~l~~l~~~~~-~~~L~~L~l~~~~~ 728 (857)
.+..+|...+ ...|+.|++.+|+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 5777776521 22399999988865
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.80 E-value=5.1e-05 Score=79.81 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=57.2
Q ss_pred eEEeecCCCCcccCCCCCCCCCcceEeeccccCcccCc-ccCCCCCCccEEeecCCCCCcccCCC--CCCCCCCeEEecC
Q 003013 649 KISIADCPNLESFPEEGLPSTKLTELSIRECENLKALP-NCMHNLTSLLNLEIRRCPSVVSFPED--GFPTNLKSLKVHD 725 (857)
Q Consensus 649 ~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~ 725 (857)
.++.++...+..+|. +..+++|++|+|++++.++.++ ..+..+++|+.|+|++| .+..++.. ..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 345555435677777 6667778888887645566665 35677777777777777 45555543 3345666666666
Q ss_pred CCCcccccccccCCCCCccEeEEcC
Q 003013 726 LKISKALLEWGSNRFTSLRKLEIWG 750 (857)
Q Consensus 726 ~~~~~~~~~~~~~~l~~L~~L~l~~ 750 (857)
|.. ..++...+..++ |+.|++.+
T Consensus 90 N~l-~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 90 NAL-ESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp SCC-SCCCSTTTCSCC-CCEEECCS
T ss_pred Ccc-ceeCHHHcccCC-ceEEEeeC
Confidence 543 223332233333 55555544
No 157
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=3.9e-05 Score=82.15 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=67.9
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccC---CceEEEEeCCCCCHHHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHY---EIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F---d~~~wv~vs~~~~~~~i~~ 219 (857)
++++||++..+.+.+++...- ..+....+.|+|++|+||||||+.+.+. ....| -.++|+......+...+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHH
Confidence 569999999999999986421 0225578999999999999999999984 33333 2356666656667778888
Q ss_pred HHHHHccCCCCCCCCChHHHHHHHHhhc
Q 003013 220 FILNSIAKDQSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 220 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l 247 (857)
.++..++........+.......+.+.+
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 8887775443212233444444444433
No 158
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.66 E-value=8e-05 Score=79.70 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=71.3
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhc---c-CCceEEEEeCCCCCHHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQR---H-YEIKAWTCVSEDFDVFGVS 218 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~---~-Fd~~~wv~vs~~~~~~~i~ 218 (857)
+.++||+...+++..++...- .......+.|+|++|+||||+|+.+.+...... . =-.++|+......+...+.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 569999999999999985421 122556889999999999999999998532210 0 1234667777777888999
Q ss_pred HHHHHHccCCCCCCCCChHHHHHHHHhhc
Q 003013 219 KFILNSIAKDQSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 219 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 247 (857)
..|+..++........+...+...+.+.+
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999987644323334555555554443
No 159
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.60 E-value=0.00024 Score=76.05 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=69.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHHHHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSKFIL 222 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~~i~ 222 (857)
+.++||++..+++..++...-.......+.+.|+|..|+||||||+.+.+....... -.++|+..+...+...+.+.++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 569999999999999986521001112348999999999999999999984322111 2356677677778888999999
Q ss_pred HHccCCCCCCCCChHHHHHHHHhhc
Q 003013 223 NSIAKDQSNNDDDLNSLQVKLKERL 247 (857)
Q Consensus 223 ~~l~~~~~~~~~~~~~~~~~l~~~l 247 (857)
..++........+...+...+.+.+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHL 120 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHH
Confidence 8886543312334455555544443
No 160
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.60 E-value=6.7e-05 Score=80.20 Aligned_cols=83 Identities=13% Similarity=0.042 Sum_probs=59.9
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchh----cc--CCceEEEEeCCCC-CHH
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQ----RH--YEIKAWTCVSEDF-DVF 215 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~----~~--Fd~~~wv~vs~~~-~~~ 215 (857)
++++||++..+++..++...- .+.....|-|+|++|+||||+|+.+++..... .. .-.++|+..+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 569999999999998875411 11245689999999999999999999853221 11 2345667666655 778
Q ss_pred HHHHHHHHHccC
Q 003013 216 GVSKFILNSIAK 227 (857)
Q Consensus 216 ~i~~~i~~~l~~ 227 (857)
.+..+++..+.+
T Consensus 98 ~~~~~l~~~l~~ 109 (384)
T 2qby_B 98 AVLSSLAGKLTG 109 (384)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 888888888743
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.60 E-value=0.015 Score=61.88 Aligned_cols=103 Identities=16% Similarity=0.256 Sum_probs=50.0
Q ss_pred hhCCCCCCcEEeEcCC--CCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCccEEEEecCCCCCCCC--CC
Q 003013 406 ALLTLCSLTDMKILGC--ASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLESLKIRSCNSLVSFP--EI 479 (857)
Q Consensus 406 ~~~~l~~L~~L~l~~~--~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~ 479 (857)
++.+|.+|+.+.+..+ ..++.++. +..+.+|+.+.+.. +++.++.... ..+.+|+.+.+.. .+..+. ..
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~~I~~~aF-~~c~~L~~i~lp~--~~~~I~~~~F 156 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVTEIDSEAF-HHCEELDTVTIPE--GVTSVADGMF 156 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCSEECTTTT-TTCTTCCEEECCT--TCCEECTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccceehhhhh-hhhcccccccccc--eeeeecccce
Confidence 4566667777766543 12344432 23355666655543 2444544322 2366677766643 223333 22
Q ss_pred CCCCCccEEeccccccccccChhhhccCCCCccEEEec
Q 003013 480 ALPSQLRTVRIQECNALKSLPEAWMHNSNSSLESLEIR 517 (857)
Q Consensus 480 ~~~~~L~~L~l~~~~~l~~lp~~~~~~~l~~L~~L~l~ 517 (857)
..+..|+.+.+.+ .+..+....+. ..+|+.+.+.
T Consensus 157 ~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip 190 (394)
T 4gt6_A 157 SYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIP 190 (394)
T ss_dssp TTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEEC
T ss_pred ecccccccccccc--eeeEecccccc--ccceeEEEEC
Confidence 4456666666643 23444443332 1345555543
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.57 E-value=0.00012 Score=76.58 Aligned_cols=13 Identities=8% Similarity=0.072 Sum_probs=9.6
Q ss_pred hcCCCCCeEeccC
Q 003013 353 QDIISLNRLQIKG 365 (857)
Q Consensus 353 ~~~~~L~~L~l~~ 365 (857)
..+++|+.|.+.+
T Consensus 136 ~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 136 EKFAHFEGLFWGD 148 (362)
T ss_dssp HHHTTCSEEEECC
T ss_pred hhcchhhheeecC
Confidence 4567888888765
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.56 E-value=0.011 Score=62.56 Aligned_cols=33 Identities=3% Similarity=0.065 Sum_probs=18.6
Q ss_pred CCCceEEecCCcccceeehhhhhhcCCCCCeEecc
Q 003013 330 LSSLKSVDLVDIANEVVLAGLFEQDIISLNRLQIK 364 (857)
Q Consensus 330 l~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 364 (857)
..+++.+.+.+ .+..+.+..|..+.+|+.+.+.
T Consensus 45 ~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp 77 (379)
T 4h09_A 45 RDRISEVRVNS--GITSIGEANFNSCYNMTKVTVA 77 (379)
T ss_dssp GGGCSEEEECT--TEEEECTTTTTTCTTCCEEEEC
T ss_pred ccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeC
Confidence 34455555543 3455666666666666666664
No 164
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.41 E-value=8.7e-05 Score=78.16 Aligned_cols=70 Identities=21% Similarity=0.277 Sum_probs=51.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCC------CHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDF------DVF 215 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~------~~~ 215 (857)
...++||+++.+++.+++.. + .++.|+|++|+|||||++++.+.. + ++|+.+.... +..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~-------~-~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN-------Y-PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH-------C-SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHH
T ss_pred hHhcCChHHHHHHHHHHHhc-------C-CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHH
Confidence 34599999999999999843 2 699999999999999999998752 2 6666654322 455
Q ss_pred HHHHHHHHHcc
Q 003013 216 GVSKFILNSIA 226 (857)
Q Consensus 216 ~i~~~i~~~l~ 226 (857)
.+.+.+...+.
T Consensus 76 ~~~~~l~~~l~ 86 (350)
T 2qen_A 76 ELIKELQSTIS 86 (350)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 55666655443
No 165
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.25 E-value=0.00033 Score=73.89 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCC-----CCHHH
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSED-----FDVFG 216 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~-----~~~~~ 216 (857)
...++||+++.+.+.+ + .. .++.|+|++|+|||||++++.+.. .. ..+|+..... .+...
T Consensus 12 ~~~~~gR~~el~~L~~-l------~~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-L------RA---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGGSCCCHHHHHHHHH-T------CS---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHHH
T ss_pred HHHhcChHHHHHHHHH-h------cC---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHHH
Confidence 3458999999999999 7 22 699999999999999999998853 22 2577776532 23444
Q ss_pred HHHHHHHH
Q 003013 217 VSKFILNS 224 (857)
Q Consensus 217 i~~~i~~~ 224 (857)
+...+.+.
T Consensus 77 ~~~~l~~~ 84 (357)
T 2fna_A 77 FLLELQKE 84 (357)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.0003 Score=66.58 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=38.5
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|+++..+++.+++... ....|-|+|..|+||||+|+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999543 4456789999999999999999884
No 167
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.18 E-value=0.00058 Score=66.37 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=38.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|+++.++.+..++... ....+-|+|.+|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999654 3334899999999999999999884
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.13 E-value=0.11 Score=54.79 Aligned_cols=72 Identities=13% Similarity=0.246 Sum_probs=32.3
Q ss_pred CceEEEccCCCCCCcch-hhhCCCCCCcEEeEcCCCCCCcCCC--CCCCCCcceeeccccccccccchhhhcCCCCCccE
Q 003013 388 RLRFLELSYCQGLTKLP-QALLTLCSLTDMKILGCASLVSFPE--VALPSQLRTVRIQECNALKSLPEAWMYNSNSSLES 464 (857)
Q Consensus 388 ~L~~L~L~~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~~l~~L~~ 464 (857)
+|+.+.+.. .++.++ .++..|.+|+.+.+.. .+..++. +..+ +|+.+.+. .+++.++..... ..+|+.
T Consensus 47 ~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~--~~l~~I~~~aF~--~~~L~~ 117 (379)
T 4h09_A 47 RISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGM--ERVKKFGDYVFQ--GTDLDD 117 (379)
T ss_dssp GCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEEC--TTCCEECTTTTT--TCCCSE
T ss_pred CCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECC--ceeeEeccceec--cCCccc
Confidence 444444432 233443 2456666666666653 2444432 1122 34444433 224444444333 335555
Q ss_pred EEEe
Q 003013 465 LKIR 468 (857)
Q Consensus 465 L~l~ 468 (857)
+.+.
T Consensus 118 i~lp 121 (379)
T 4h09_A 118 FEFP 121 (379)
T ss_dssp EECC
T ss_pred ccCC
Confidence 5553
No 169
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00067 Score=68.70 Aligned_cols=83 Identities=12% Similarity=0.017 Sum_probs=58.0
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhcc---CCc--eEEEEeCCCCCHHHHHH
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRH---YEI--KAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~---Fd~--~~wv~vs~~~~~~~i~~ 219 (857)
+.|||+++++|...|...- .++....|-|+|..|+|||++|+.|.+....... ... ++.+......+...+..
T Consensus 22 L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 8899999999998876421 1235678899999999999999999986432211 112 33444445567788999
Q ss_pred HHHHHccCCC
Q 003013 220 FILNSIAKDQ 229 (857)
Q Consensus 220 ~i~~~l~~~~ 229 (857)
.|++++.+..
T Consensus 100 ~I~~~L~g~~ 109 (318)
T 3te6_A 100 KIWFAISKEN 109 (318)
T ss_dssp HHHHHHSCCC
T ss_pred HHHHHhcCCC
Confidence 9999997653
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.11 E-value=0.0001 Score=77.69 Aligned_cols=57 Identities=11% Similarity=0.068 Sum_probs=26.6
Q ss_pred CCCcceeeccccccccc-----cchhhhcCCCCCccEEEEecCCCCCCC-----C-CCCCCCCccEEecccc
Q 003013 433 PSQLRTVRIQECNALKS-----LPEAWMYNSNSSLESLKIRSCNSLVSF-----P-EIALPSQLRTVRIQEC 493 (857)
Q Consensus 433 l~~L~~L~l~~~~~l~~-----l~~~~~~~~l~~L~~L~l~~~~~~~~~-----~-~~~~~~~L~~L~l~~~ 493 (857)
.++|++|+|++|. +.. ++..+.. .++|++|++++|. +... + .+...++|++|+++++
T Consensus 182 ~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~--~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 182 NTSVTHLSLLHTG-LGDEGLELLAAQLDR--NRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CSSCCEEECTTSS-CHHHHHHHHHHHGGG--CSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCcCEEeCCCCC-CCcHHHHHHHHHHhc--CCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 4455555555544 332 1222222 4566666666553 2211 0 1123456666666664
No 171
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.02 E-value=0.00045 Score=64.87 Aligned_cols=45 Identities=27% Similarity=0.311 Sum_probs=38.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|+++..+.+.+++... ....|-|+|..|+||||+|+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999543 3456789999999999999999884
No 172
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.95 E-value=0.00012 Score=77.24 Aligned_cols=156 Identities=19% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCCCCeEeccCCCCcccccccccccCCCCCCCCCceEEEccCCCCCCc-chhhhCCCCCCcEEeEcCCCCCCcCC--CC-
Q 003013 355 IISLNRLQIKGCPRLLSLVTEEEHDHQQPELPCRLRFLELSYCQGLTK-LPQALLTLCSLTDMKILGCASLVSFP--EV- 430 (857)
Q Consensus 355 ~~~L~~L~l~~~~~l~~l~~~~~~~~~i~~l~~~L~~L~L~~~~~l~~-lp~~~~~l~~L~~L~l~~~~~l~~~~--~~- 430 (857)
++.|+.|++++|. +......... ..+..-+.+|++|+|++|..-.. +......+.+|++|+|++| .+.... .+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~-~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVA-AVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHH-HHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHH-HHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHH
Confidence 4567888888765 3221110000 00111226788888888753221 2222234567888888887 343321 11
Q ss_pred ----CCCCCcceeeccccccccc-----cchhhhcCCCCCccEEEEecCCCCCCC-----C-CCCCCCCccEEecccccc
Q 003013 431 ----ALPSQLRTVRIQECNALKS-----LPEAWMYNSNSSLESLKIRSCNSLVSF-----P-EIALPSQLRTVRIQECNA 495 (857)
Q Consensus 431 ----~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~l~~L~~L~l~~~~~~~~~-----~-~~~~~~~L~~L~l~~~~~ 495 (857)
...++|++|+|++|. ++. ++..+.. +++|++|+|++|. +... + .+...++|+.|++++|.
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~--~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~- 222 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAG--NTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG- 222 (372)
T ss_dssp HHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHT--CSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-
T ss_pred HHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhc--CCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-
Confidence 235778888888876 543 3333343 7888999988864 3321 1 23445678888888864
Q ss_pred ccc-----cChhhhccCCCCccEEEecCCC
Q 003013 496 LKS-----LPEAWMHNSNSSLESLEIRSCD 520 (857)
Q Consensus 496 l~~-----lp~~~~~~~l~~L~~L~l~~c~ 520 (857)
+.. ++..+.. .++|++|+++++.
T Consensus 223 i~~~g~~~l~~~L~~--~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 223 AGDTAALALARAARE--HPSLELLHLYFNE 250 (372)
T ss_dssp CCHHHHHHHHHHHHH--CSSCCEEECTTSS
T ss_pred CCHHHHHHHHHHHHh--CCCCCEEeccCCC
Confidence 322 2222222 4778888888753
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.85 E-value=0.00075 Score=66.69 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=39.1
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|++..++.+..++.... ....+-|+|.+|+||||+|+.+.+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999996542 2358899999999999999999874
No 174
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.0012 Score=68.51 Aligned_cols=45 Identities=20% Similarity=0.454 Sum_probs=38.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|+++.++.+..++..+ ....+-|+|.+|+||||+|+.+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999653 3333899999999999999999884
No 175
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0025 Score=66.12 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=38.9
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|+++.++.+..++..+ ....+-|+|..|+||||+|+.+.+.
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 345999999999999999654 3345899999999999999999884
No 176
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.33 E-value=0.0021 Score=57.28 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=35.0
Q ss_pred eeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++|++...+++.+.+..-.. .-.-|-|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999888754221 2234679999999999999999985
No 177
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.26 E-value=0.0033 Score=61.94 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=31.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
.-.-|.|-+.....|++|.+.|-+ .....|..+-|-+...
T Consensus 23 ~w~kv~I~~g~ky~k~~ll~~i~~--~~~~~f~p~~~~~~~~ 62 (267)
T 3rw6_A 23 NWFKITIPYGRKYDKAWLLSMIQS--KCSVPFTPIEFHYENT 62 (267)
T ss_dssp CCEEEEETTGGGSCHHHHHHHHHH--TCSSCCCCEEEEEETT
T ss_pred CeEEEEecCccccCHHHHHHHHHH--hCCCCcEeEEEEEeCC
Confidence 567888999888999999999977 5567788888754443
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.0037 Score=63.29 Aligned_cols=52 Identities=29% Similarity=0.244 Sum_probs=38.6
Q ss_pred CCeeecchhHHHHHHHHHhcCCCC-------CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLR-------ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~-------~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.++.++++.+++...-.. +-....-|-|+|..|+||||+|+.+.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999998887431000 0013456899999999999999999884
No 179
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.01 E-value=0.0077 Score=57.17 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 150 KEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 150 ~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
+.++.+..++..... ......|-|+|.+|+||||||+.+++. .......++++.+
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~ 90 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh
Confidence 445566666654321 112267899999999999999999984 3333345566654
No 180
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.91 E-value=0.0055 Score=61.05 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=36.6
Q ss_pred cCCeeecchhHHHHHHHHHh---cCCCC---CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLL---NDDLR---ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~---~~~~~---~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++.+.+++. ....- +-....-|-|+|..|+||||+|+.+.+.
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35679999988877766542 21100 0123355789999999999999999884
No 181
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.88 E-value=0.0022 Score=57.01 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=33.0
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|+++.++++.+.+..-.. .-.-|-|+|..|+|||++|+.+.+.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3589999888888887753211 1133679999999999999999884
No 182
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.87 E-value=0.0064 Score=61.89 Aligned_cols=52 Identities=27% Similarity=0.293 Sum_probs=39.1
Q ss_pred cCCeeecchhHHHHHHHHHhcC--------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLND--------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++++.+++... .. +-.....|.|+|..|+||||||+.+.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~-~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH-CCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc-CCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3456999999998888877421 00 0123467899999999999999999984
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.82 E-value=0.0067 Score=62.16 Aligned_cols=49 Identities=27% Similarity=0.213 Sum_probs=35.8
Q ss_pred eecchhHHHHHHHHHhcC---------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLND---------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~---------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|.+..++.|.+++... +.........|-|+|..|+||||+|+.+.+.
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 789998888887765421 0001224567899999999999999988874
No 184
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.81 E-value=0.0057 Score=56.85 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 148 ~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.++.++.+.+++..-. ...-..++|+|..|+||||||+.+.+..
T Consensus 19 ~~~~~~~~~~~~~~~~---~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN---PEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCC---GGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455555555554321 1234789999999999999999999853
No 185
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.70 E-value=0.0039 Score=64.91 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=39.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|++..++.+..++..... .......|-|+|..|+||||+|+.+.+.
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 45699999999999988864210 1124456899999999999999999773
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.70 E-value=0.0081 Score=61.12 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=38.9
Q ss_pred cCCeeecchhHHHHHHHHHhcCC------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLNDD------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~~------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++.+.+++.... ..-......|-|+|..|+||||+|+.+.+.
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34569999999999988773310 000013467899999999999999999884
No 187
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.67 E-value=0.0068 Score=63.52 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+++|+++.++.+..++... ....+-|+|..|+||||+|+.+.+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999998543 2233899999999999999999885
No 188
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.64 E-value=0.0088 Score=64.99 Aligned_cols=45 Identities=33% Similarity=0.421 Sum_probs=37.6
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.+||++..++.++..|... ...-+-|+|..|+||||+|+.+.+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~------~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhcc------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999653 2234579999999999999999873
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.64 E-value=0.012 Score=55.70 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 148 ~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
|+...+++.+.+.... .+...+|+|.|..|.||||+++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556777888876532 23568999999999999999999876
No 190
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.62 E-value=0.0036 Score=64.72 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=38.3
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|++..++.+..++..... .+.....|-|+|..|+||||+|+.+.+.
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35699999999988888753110 0113356889999999999999999884
No 191
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.61 E-value=0.012 Score=57.64 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=39.3
Q ss_pred Ceeecc---hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCC
Q 003013 143 AKVYGR---EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSE 210 (857)
Q Consensus 143 ~~~vG~---~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~ 210 (857)
++++|. +...+.+..+.... ....|-|+|..|+||||+|+.+.+. .......+.|+..++
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGI 90 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 345653 35566666666432 4468899999999999999999884 322233456666543
No 192
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.53 E-value=0.012 Score=60.65 Aligned_cols=53 Identities=30% Similarity=0.287 Sum_probs=39.7
Q ss_pred ccCCeeecchhHHHHHHHHHhcC-------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLND-------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~-------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++++|.++.++.+.+++... .. ......-|-++|..|+|||+||+++.+.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999998887310 00 1123457899999999999999999884
No 193
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.52 E-value=0.0071 Score=62.30 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=37.7
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|+++.++.+.+++..+ ....+-|+|..|+||||+|+.+.+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHH
Confidence 345999999999999888443 3334899999999999999999874
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.51 E-value=0.012 Score=60.37 Aligned_cols=54 Identities=28% Similarity=0.307 Sum_probs=39.5
Q ss_pred ccCCeeecchhHHHHHHHHHhc----CC--CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLN----DD--LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~----~~--~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++++|.++.++.+.+++.. .. .......+-|-++|..|+||||||+++.+.
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 3456799999999888877632 00 001123467899999999999999999984
No 195
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.48 E-value=0.011 Score=58.13 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=26.4
Q ss_pred CCceEEEccCCCCCC--cchhhhCCCCCCcEEeEcCCCCCCcCCCCCCCC--Ccceeeccccc
Q 003013 387 CRLRFLELSYCQGLT--KLPQALLTLCSLTDMKILGCASLVSFPEVALPS--QLRTVRIQECN 445 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~--~L~~L~l~~~~ 445 (857)
++|+.|+|++|.... .+|..+..+++|++|+|++| .+..+..+..+. +|++|+|++++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence 455666666553321 23344445555666665554 333332222222 44444444444
No 196
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.47 E-value=0.012 Score=62.08 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=38.5
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|+++.++.+..++.... -.+.+-|+|..|+||||+|+.+.+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999996542 2357889999999999999999874
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.45 E-value=0.009 Score=62.44 Aligned_cols=53 Identities=25% Similarity=0.270 Sum_probs=38.9
Q ss_pred cCCeeecchhHHHHHHHHHhc----CCC--CCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLN----DDL--RADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~----~~~--~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++.+.+++.. ... ........|-|+|..|+||||+|+.+.+.
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345699999999998887742 000 00123567899999999999999999874
No 198
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.31 E-value=0.016 Score=61.10 Aligned_cols=48 Identities=19% Similarity=0.345 Sum_probs=36.5
Q ss_pred CCeeecchhHHHH---HHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEE---IIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~---i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++||++..++. +...+..... ....+-|+|..|+||||+|+.+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999988766 5555544321 2368899999999999999999884
No 199
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.31 E-value=0.0054 Score=63.48 Aligned_cols=50 Identities=24% Similarity=0.420 Sum_probs=36.7
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|.+..++.+-..+..... .++....+.|+|..|+||||||+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4578988877777666643200 1124567999999999999999999884
No 200
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.26 E-value=0.0098 Score=55.45 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=7.9
Q ss_pred hcCCCCCeEeccCC
Q 003013 353 QDIISLNRLQIKGC 366 (857)
Q Consensus 353 ~~~~~L~~L~l~~~ 366 (857)
...+.|+.|++++|
T Consensus 33 ~~~~~L~~L~L~~n 46 (185)
T 1io0_A 33 NNDPDLEEVNLNNI 46 (185)
T ss_dssp TTCTTCCEEECTTC
T ss_pred hcCCCCCEEEecCC
Confidence 44555666666554
No 201
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.25 E-value=0.011 Score=63.55 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=38.1
Q ss_pred CCeeecchhHH---HHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEK---EEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~---~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-+++||.++.+ ..+..++..+ .+..+-|||..|+||||+|+.+.+.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 35689999888 6777777543 5578999999999999999999884
No 202
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.19 E-value=0.013 Score=64.77 Aligned_cols=52 Identities=27% Similarity=0.339 Sum_probs=40.3
Q ss_pred CCeeecchhHHHHHHHHHhcCC-----------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDD-----------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~-----------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|+++.++++..|+.... ..+....+.+-|+|..|+||||+|+.+.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999996510 000013468999999999999999999884
No 203
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.17 E-value=0.017 Score=57.61 Aligned_cols=54 Identities=30% Similarity=0.283 Sum_probs=34.0
Q ss_pred cccCCeeecchhHHHHHHHHHhcCC--------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLNDD--------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~~--------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+..+++.|.++.++++.+.+...- -.-.-.-. |+++|..|.||||||+.+.+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3456779999999888877543110 00001112 999999999999999999884
No 204
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.11 E-value=0.014 Score=57.91 Aligned_cols=53 Identities=28% Similarity=0.299 Sum_probs=35.6
Q ss_pred cCCeeecchhHHHHHHHHHh---cCCCC---CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLL---NDDLR---ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~---~~~~~---~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++++.+++. ....- ...-..-|.|+|..|+||||+|+.+.+.
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34569999988877765532 21000 0012335889999999999999999884
No 205
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.05 E-value=0.021 Score=58.08 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=34.1
Q ss_pred ecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 146 YGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 146 vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
|+.+.-.+++++.+...- .......|.|+|+.|.||||+++.+..
T Consensus 2 ~~~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 556677788888775321 123567799999999999999999887
No 206
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.02 E-value=0.0076 Score=60.24 Aligned_cols=52 Identities=27% Similarity=0.280 Sum_probs=35.3
Q ss_pred CCeeecchhHHHHHHHHHhcCC-CC-----CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDD-LR-----ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~-~~-----~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.++.++.+.+++..-. .. ......-|-|+|..|+||||+|+.+.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4569999988887777653100 00 0001223679999999999999999884
No 207
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=94.96 E-value=0.0085 Score=55.88 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=19.8
Q ss_pred CCceEEEccCCCCCC-----cchhhhCCCCCCcEEeEcCC
Q 003013 387 CRLRFLELSYCQGLT-----KLPQALLTLCSLTDMKILGC 421 (857)
Q Consensus 387 ~~L~~L~L~~~~~l~-----~lp~~~~~l~~L~~L~l~~~ 421 (857)
+.|++|+|++|..+. .+...+...++|++|+|++|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 566666666652222 23445555666666666665
No 208
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.90 E-value=0.019 Score=54.65 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.++|.+.+... .+...+|+|.|..|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445566665432 135689999999999999999998773
No 209
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.83 E-value=0.014 Score=58.09 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=33.6
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++|.+....++.+.+..-.. .-..|-|+|..|+|||++|+.+.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999998888877654211 1245679999999999999999885
No 210
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.81 E-value=0.012 Score=61.63 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=35.4
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.++++|.++..+.+..++.... .... +.|+|..|+||||+|+.+.+
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHH
Confidence 3568999998888888772221 1233 89999999999999998877
No 211
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.78 E-value=0.014 Score=53.96 Aligned_cols=20 Identities=50% Similarity=0.826 Sum_probs=18.9
Q ss_pred eEEEEeccCCcchHHHHHHH
Q 003013 171 SVISINGMAGVGKTTLAQLV 190 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v 190 (857)
.+|+|.|+.|.||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 212
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.64 E-value=0.018 Score=59.81 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=37.0
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|.++.++.+..++..+ ++..+.++|..|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999998888543 3333899999999999999999874
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.026 Score=59.62 Aligned_cols=53 Identities=32% Similarity=0.308 Sum_probs=38.9
Q ss_pred ccCCeeecchhHHHHHHHHHhcC---C-----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLND---D-----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~---~-----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..+++.|.++.+++|.+.+... . - +-...+=|-+||.+|+|||+||++|.+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~-g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQI-GIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH-CCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC-CCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999998887766320 0 0 1123456889999999999999999984
No 214
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.56 E-value=0.028 Score=57.90 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=39.1
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-++++|.++.++.+..++..+. ...++-++|..|+||||+|+.+.+.
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 4569999999999999996432 3467888899999999999999874
No 215
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.53 E-value=0.019 Score=58.23 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=36.8
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|.+..+.++.+.+..-.. .-..|-|+|..|+|||++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4589999999998888765321 2245679999999999999999884
No 216
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.52 E-value=0.022 Score=59.28 Aligned_cols=53 Identities=28% Similarity=0.273 Sum_probs=38.4
Q ss_pred cCCeeecchhHHHHHHHHHhcC----C--CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLND----D--LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~----~--~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++.+.+++... . .......+-|-|+|..|+||||||+++.+.
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 3567999999999998876311 0 001112345889999999999999999984
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.49 E-value=0.029 Score=57.38 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.5
Q ss_pred eecchhHHHHHHHHHhcCC---CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLNDD---LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~---~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|.+..++.+...+.... .........+.|+|..|+||||+|+.+.+.
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 7899999888888876421 001123468999999999999999999884
No 218
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.49 E-value=0.017 Score=59.13 Aligned_cols=51 Identities=27% Similarity=0.327 Sum_probs=37.0
Q ss_pred CeeecchhHHHHHHHHHhcC----CC----CCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLND----DL----RADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~----~~----~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.++.++.+...+... .. .......-|-|+|..|+||||+|+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999998887540 00 00012346779999999999999999874
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.031 Score=59.07 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=39.5
Q ss_pred cccCCeeecchhHHHHHHHHHhcC--CCC-----CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLND--DLR-----ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~~--~~~-----~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+..++|.|.++.+++|.+.+... ... +-.-.+=|-+||.+|.|||+||++|.+.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344577899999888887766421 000 1123467899999999999999999984
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.44 E-value=0.028 Score=65.38 Aligned_cols=45 Identities=33% Similarity=0.421 Sum_probs=37.9
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.+||+++.++++...|... ...-+-++|..|+||||+|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~------~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR------TKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS------SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCC------CCCCeEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999653 2234679999999999999999874
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.42 E-value=0.023 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+|+|+.|.||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4479999999999999999999773
No 222
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.40 E-value=0.033 Score=59.99 Aligned_cols=54 Identities=28% Similarity=0.307 Sum_probs=39.9
Q ss_pred ccCCeeecchhHHHHHHHHHhc----CC--CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLN----DD--LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~----~~--~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++++|.++.++.+.+++.. .. .......+-|-|+|..|+||||||+++.+.
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456799999999999887731 00 000123467899999999999999999984
No 223
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.39 E-value=0.033 Score=54.87 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 148 ~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+...+.++..+..+.. ......+|.|.|+.|.||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556677777766543 445668999999999999999999876
No 224
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.38 E-value=0.021 Score=58.00 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.4
Q ss_pred CCceEEEEeccCCcchHHHHHHHhc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++.+||+|+|=|||||||.+-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3779999999999999999877654
No 225
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.38 E-value=0.038 Score=55.19 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=34.3
Q ss_pred eeecchhHHHHHHH-------HHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIE-------LLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~-------~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++|.+...++++. .+... .......|-|+|..|+||||+|+.+.+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 47788777666665 33221 1235678899999999999999999884
No 226
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.37 E-value=0.042 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=23.1
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+|||.|..|.||||||+.+..-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999988774
No 227
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.33 E-value=0.033 Score=58.99 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=39.4
Q ss_pred ccCCeeecchhHHHHHHHHHhcC----CC--CCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLND----DL--RADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~~----~~--~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++++|.+..++.+.+++... .. .......-|-|+|..|+|||++|+.|.+.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999998887321 00 00112467899999999999999999773
No 228
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.33 E-value=0.016 Score=51.53 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.3
Q ss_pred ceEEEEeccCCcchHHHHHHHhccc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
-..++|+|..|.|||||++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999853
No 229
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.32 E-value=0.023 Score=66.97 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=38.1
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.+|||++..++++..|... ...-+-++|..|+||||+|+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~------~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRR------TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCS------SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999653 2344689999999999999999884
No 230
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.31 E-value=0.03 Score=59.07 Aligned_cols=53 Identities=30% Similarity=0.282 Sum_probs=38.8
Q ss_pred ccCCeeecchhHHHHHHHHHhc----CC----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLN----DD----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~----~~----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++|.|.++.+++|.+.+.. .+ - +-...+-|-+||..|.|||+||++|.+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~-Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATL-GIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHH-TCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHC-CCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 4456799999998888776421 00 0 1124567889999999999999999984
No 231
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.024 Score=58.89 Aligned_cols=54 Identities=28% Similarity=0.220 Sum_probs=38.6
Q ss_pred cccCCeeecchhHHHHHHHHHhc----CC----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLN----DD----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~----~~----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+..++|.|.++.+++|.+.+.- .+ - +-...+=|-+||.+|.|||+||++|.+.
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~-gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESL-GIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHH-TCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhC-CCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 34557799999888887766532 00 0 1123456789999999999999999884
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.22 E-value=0.023 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|+|+.|.||||+|+.+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 233
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.21 E-value=0.035 Score=64.70 Aligned_cols=45 Identities=33% Similarity=0.372 Sum_probs=38.2
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.++|+++..++++..|... ...-+-|+|..|+||||+|+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHH
Confidence 56999999999999999543 3345679999999999999999874
No 234
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.032 Score=58.94 Aligned_cols=54 Identities=26% Similarity=0.280 Sum_probs=39.6
Q ss_pred cccCCeeecchhHHHHHHHHHhc----CC----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLN----DD----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~----~~----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+..+++.|.++.+++|.+.+.. .+ . +-...+-|-+||.+|.|||+||++|.+.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~-g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDM-GIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHH-CCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhC-CCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34457799999999888776422 10 0 1123567889999999999999999884
No 235
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.12 E-value=0.055 Score=54.29 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 149 EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 149 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+++++..++.... ......+|-|.|+.|.||||+|+.+..
T Consensus 13 ~~~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 13 ENRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445666666665433 344568999999999999999999876
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.11 E-value=0.047 Score=59.11 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCeeecchhHHHHHHH---HHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIE---LLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~---~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.++.++.+.. ++..+. ...+-|-++|..|+||||+|+.+.+.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3669999988775544 443322 13356889999999999999999884
No 237
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.10 E-value=0.037 Score=57.99 Aligned_cols=49 Identities=33% Similarity=0.354 Sum_probs=36.1
Q ss_pred eecchhHHHHHHHHHhc-------CC--CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLN-------DD--LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~-------~~--~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|.++.++.+..++.. .. .........|-++|..|+||||+|+.+.+.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 78999999998888831 00 001113457899999999999999999884
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.08 E-value=0.023 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.2
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|.|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 239
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.02 E-value=0.053 Score=54.90 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhc
Q 003013 147 GREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 147 G~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
|-......+...+.... ......+|||.|..|.||||+|+.+..
T Consensus 71 ~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44444455554554432 234678999999999999999998865
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.02 E-value=0.035 Score=57.41 Aligned_cols=42 Identities=17% Similarity=0.232 Sum_probs=35.8
Q ss_pred eeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+++|+++.++.+...+... .-+-++|..|+||||||+.+.+.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999998888653 25789999999999999999873
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.98 E-value=0.034 Score=60.28 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=36.3
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhccc
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
++|.++.++.+...+..+ .-|-|+|..|+|||+||+.+.+..
T Consensus 24 ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHHH
Confidence 899999999998888654 357899999999999999998853
No 242
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.94 E-value=0.054 Score=55.72 Aligned_cols=39 Identities=36% Similarity=0.335 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+..++.... .....+-|||..|+||||||+.+.+.
T Consensus 22 a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 22 AYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3445555553321 13467899999999999999999984
No 243
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.93 E-value=0.027 Score=52.17 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=21.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+|+|+|..|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 369999999999999999999773
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.86 E-value=0.03 Score=55.31 Aligned_cols=51 Identities=33% Similarity=0.377 Sum_probs=33.5
Q ss_pred CCeeecchhHHHHHHHHHhc--CC-----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLN--DD-----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~--~~-----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.++.+.++.++... .. .+-.-. +-|.|+|..|+||||||+.+.+.
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCC-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCC-CeEEEECCCCCCHHHHHHHHHHH
Confidence 45689988776666554321 00 000001 12899999999999999999884
No 245
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.83 E-value=0.024 Score=52.13 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|+.|.||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999877
No 246
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.68 E-value=0.039 Score=52.41 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 247
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.63 E-value=0.032 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|-|.|+.|.||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998773
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.59 E-value=0.035 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|.|.|+.|.||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999876
No 249
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.58 E-value=0.045 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|+|.|+.|.||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.58 E-value=0.038 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 347999999999999999998664
No 251
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.58 E-value=0.036 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=20.2
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999965
No 252
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.56 E-value=0.042 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=22.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+|.|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999874
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.48 E-value=0.065 Score=51.69 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 149 EKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 149 ~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++..+.+...+.. ....+|.|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555532 26789999999999999999988764
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.45 E-value=0.036 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...|.|.|+.|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 255
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.45 E-value=0.04 Score=54.22 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998866
No 256
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.44 E-value=0.041 Score=49.71 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|.|..|.|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999874
No 257
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.43 E-value=0.035 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.1
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|+.|.||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.43 E-value=0.044 Score=51.85 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999877
No 259
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.42 E-value=0.037 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999876
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.42 E-value=0.039 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|+|.|+.|.||||+++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999976
No 261
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.39 E-value=0.047 Score=52.49 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=33.1
Q ss_pred eecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 145 VYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 145 ~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+-+.++..+.+...+... +..+|+|+|.+|+|||||+..+...
T Consensus 11 l~~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 445566677777666332 6789999999999999999988764
No 262
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.38 E-value=0.062 Score=56.09 Aligned_cols=54 Identities=26% Similarity=0.252 Sum_probs=39.2
Q ss_pred cccCCeeecchhHHHHHHHHHhc----CC----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 139 LVNEAKVYGREKEKEEIIELLLN----DD----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 139 ~~~~~~~vG~~~~~~~i~~~L~~----~~----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+..++|.|.++.+++|.+.+.. .+ - +-.-.+=|-+||..|.|||+||++|.+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~-Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEM-GIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHH-TCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhC-CCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 34456788999988888776532 10 0 1123467899999999999999999984
No 263
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.37 E-value=0.043 Score=52.32 Aligned_cols=24 Identities=46% Similarity=0.412 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|||.|..|.|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999877
No 264
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.35 E-value=0.071 Score=57.33 Aligned_cols=52 Identities=31% Similarity=0.295 Sum_probs=35.8
Q ss_pred cCCeeecchhHHHHHHHHHhc--CC-----CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLN--DD-----LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~--~~-----~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++++.+++.. .. - +..-.+-|.|+|..|+||||||+.|.+.
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~-g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRI-GARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTT-TCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhc-CCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345699999887777665432 10 0 0011234789999999999999999884
No 265
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.33 E-value=0.057 Score=54.09 Aligned_cols=52 Identities=33% Similarity=0.343 Sum_probs=34.5
Q ss_pred cCCeeecchhHHHHHHHHHhcCC-------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLNDD-------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~~~-------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++++.++...-. .+-.-... |.|+|..|+||||||+.+.+.
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 34579999887776655442100 00000112 899999999999999999884
No 266
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.30 E-value=0.042 Score=50.52 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=20.3
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++|+|..|.|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 267
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.23 E-value=0.068 Score=62.18 Aligned_cols=53 Identities=28% Similarity=0.278 Sum_probs=39.6
Q ss_pred ccCCeeecchhHHHHHHHHHhc----C----CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 140 VNEAKVYGREKEKEEIIELLLN----D----DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 140 ~~~~~~vG~~~~~~~i~~~L~~----~----~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+..++++|.++.++++.+++.. . .. .-.....|.|+|..|+||||||+.+.+.
T Consensus 201 v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l-~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAI-GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSS-CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhc-CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4456799999999888888743 0 00 1123457999999999999999999883
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.20 E-value=0.041 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|..|.|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 6899999999999999999876
No 269
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.20 E-value=0.057 Score=50.21 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|.|+.|.||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 270
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.16 E-value=0.037 Score=51.16 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|.|+.|.||||+|+.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 346789999999999999999876
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.16 E-value=0.033 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.3
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+|+|.|+.|.||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 272
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.16 E-value=0.04 Score=57.47 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.+..++.+...+.... ..-|-|+|..|+||||+|+.+.+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 4569999887766555554321 123889999999999999999884
No 273
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.12 E-value=0.043 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.0
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998773
No 274
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.12 E-value=0.049 Score=59.07 Aligned_cols=52 Identities=25% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCeeecchhHHHHHHHHHhcC--CCC-----CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 142 EAKVYGREKEKEEIIELLLND--DLR-----ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 142 ~~~~vG~~~~~~~i~~~L~~~--~~~-----~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++++|.+..++++.+++... ... +-....-|-|+|..|+|||++|+++.+.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999988877431 000 0113456889999999999999999874
No 275
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.08 E-value=0.049 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+|+|.|+.|.||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998773
No 276
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.06 E-value=0.053 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|||.|..|.|||||++.+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 568999999999999999999877
No 277
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.03 E-value=0.051 Score=51.56 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.2
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|||.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 278
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.03 E-value=0.051 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.02 E-value=0.059 Score=50.96 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+|+.+.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999998876
No 280
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.00 E-value=0.038 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|.|..|.|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57999999999999999999873
No 281
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.96 E-value=0.053 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|||.|+.|.||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998866
No 282
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.95 E-value=0.05 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999773
No 283
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.91 E-value=0.053 Score=58.22 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+.|||..|+||||||+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999999984
No 284
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.87 E-value=0.095 Score=54.49 Aligned_cols=39 Identities=26% Similarity=0.415 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...++.+.+.... .+..+|+|.|.+|+|||||+..+...
T Consensus 64 ~~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 64 QAQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 3555666664322 37789999999999999999988653
No 285
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.87 E-value=0.099 Score=50.07 Aligned_cols=46 Identities=20% Similarity=0.036 Sum_probs=33.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVFGVSK 219 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~~i~~ 219 (857)
.-.+++|+|.+|+||||||+.+.. . .=..++|+.....++...+.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH
Confidence 446999999999999999999876 1 113567777666556555543
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.86 E-value=0.12 Score=59.05 Aligned_cols=56 Identities=25% Similarity=0.242 Sum_probs=40.0
Q ss_pred ccccCCeeecchhHHHHHHHHHh----cCC--CC-CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 138 SLVNEAKVYGREKEKEEIIELLL----NDD--LR-ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 138 ~~~~~~~~vG~~~~~~~i~~~L~----~~~--~~-~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+.+..++|.|.++.+++|.+++. ..+ .. +-...+-|-++|..|+|||+||++|.+.
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455679999988888777653 211 00 1124567899999999999999999984
No 287
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.84 E-value=0.061 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|..|+||||+++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999998773
No 288
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.83 E-value=0.05 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=20.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 289
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.82 E-value=0.057 Score=51.27 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+|+|.|..|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3469999999999999999999773
No 290
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.79 E-value=0.055 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=21.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+|+|+|+.|.||||+++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 291
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.74 E-value=0.052 Score=52.42 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.4
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|..|.||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 292
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.71 E-value=0.048 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|+|+.|+||||+++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998763
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.67 E-value=0.081 Score=55.71 Aligned_cols=50 Identities=28% Similarity=0.260 Sum_probs=35.5
Q ss_pred eeecchhHHHHHHHHHhc----CC--------------------CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIELLLN----DD--------------------LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~----~~--------------------~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++|.++.++.+..++.. .. .........|-++|..|+||||+|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 488999999888877721 00 000112346789999999999999999884
No 294
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.65 E-value=0.066 Score=47.99 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|.-|.|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4479999999999999999998773
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.61 E-value=0.068 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|.|+.|.||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999876
No 296
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.60 E-value=0.047 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.597 Sum_probs=20.5
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
++++|+|..|.|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 297
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=92.58 E-value=0.11 Score=52.61 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=35.7
Q ss_pred chhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 148 REKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 148 ~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
+...++.+.+++..-.. .....|-|||..|+|||+||+++.+.... ..--.++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 34445556666654211 12467889999999999999999995331 22223455554
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.56 E-value=0.06 Score=52.93 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=20.2
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|.|.|+.|.||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999999876
No 299
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.53 E-value=0.049 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|.|.|+.|.||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 300
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.51 E-value=0.065 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|.+|+||||++..+..-
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998764
No 301
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.50 E-value=0.065 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+-+||..|+|||+||+.|.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568889999999999999999984
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.50 E-value=0.063 Score=50.35 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998866
No 303
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.46 E-value=0.047 Score=50.72 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|+|.|+.|.||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999866
No 304
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.46 E-value=0.066 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=20.3
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..|+|.|+.|.||||+|+.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.45 E-value=0.066 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|.|+.|.||||+|+.+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 306
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.35 E-value=0.076 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|||.|..|.|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 307
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.34 E-value=0.07 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|.|+.|.||||+|+.+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998773
No 308
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.33 E-value=0.065 Score=48.78 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|+|.|+.|.||||+|+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 309
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.31 E-value=0.078 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.719 Sum_probs=21.3
Q ss_pred CceEEEEeccCCcchHHHHHHHh
Q 003013 169 GFSVISINGMAGVGKTTLAQLVY 191 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~ 191 (857)
...+|+|.|+.|.||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999999986
No 310
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.26 E-value=0.12 Score=52.65 Aligned_cols=26 Identities=35% Similarity=0.294 Sum_probs=23.1
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+...+|+|+|..|+||||+++.+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999998874
No 311
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.21 E-value=0.066 Score=59.19 Aligned_cols=51 Identities=33% Similarity=0.424 Sum_probs=36.7
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|.++.++.+.+.+.-..-+..-...++.++|..|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999888887765543211001124568999999999999999999883
No 312
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.21 E-value=0.18 Score=49.08 Aligned_cols=56 Identities=11% Similarity=0.006 Sum_probs=36.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFGVSKFILNSI 225 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~----~Fd~~~wv~vs~~~~~~~i~~~i~~~l 225 (857)
.-.+++|+|..|.||||||+.+........ .-..++|+.....++...+. +++..+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERY 82 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHc
Confidence 446999999999999999999876322211 12467787766655555443 334443
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.20 E-value=0.057 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|.|.|+.|.||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999876
No 314
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.16 E-value=0.081 Score=48.78 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|+|.|+.|.||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999999877
No 315
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.15 E-value=0.067 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|+.|.||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 316
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.15 E-value=0.06 Score=49.97 Aligned_cols=24 Identities=33% Similarity=0.351 Sum_probs=21.2
Q ss_pred eEEEEeccCCcchHHHHHHHhccc
Q 003013 171 SVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.+|+|+|..|+|||||++.+....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 378999999999999999998743
No 317
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.14 E-value=1 Score=47.49 Aligned_cols=25 Identities=32% Similarity=0.207 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988764
No 318
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.14 E-value=0.075 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+..-
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3469999999999999999999773
No 319
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.11 E-value=0.077 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|+|.|+.|.||||+++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999985
No 320
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.10 E-value=0.22 Score=42.80 Aligned_cols=46 Identities=30% Similarity=0.328 Sum_probs=36.9
Q ss_pred CCCC--CCCC-CCCCCCeEecCCCCCCcccCCCC-CCccccCceeccCCCC
Q 003013 753 PDLV--SPPP-FPASLTELWISFMPDLECLSSIG-ENLTSLKTLRLSYCRK 799 (857)
Q Consensus 753 ~~l~--~~~~-~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~ 799 (857)
.++. .+|. .+++|+.|+|++ ++|+.++... ..+++|+.|+|.+||-
T Consensus 18 ~~L~~~~vP~~lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 18 RGLTWASLPTAFPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp SCCCTTTSCSCCCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCccccCCCCCCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 4565 7775 667899999988 7899998776 7889999999998863
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.03 E-value=0.09 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|.|+.|.||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999876
No 322
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.01 E-value=0.17 Score=51.30 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|||.|..|.|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 558999999999999999999877
No 323
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.00 E-value=0.12 Score=54.62 Aligned_cols=51 Identities=27% Similarity=0.316 Sum_probs=36.8
Q ss_pred CeeecchhHHHHHHHHHhcC--------CCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLND--------DLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~--------~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.++.++.+..++... .....-..+-|-++|+.|+||||+|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 34899999999987777331 0000112355889999999999999999873
No 324
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=91.97 E-value=0.17 Score=54.79 Aligned_cols=53 Identities=32% Similarity=0.339 Sum_probs=35.4
Q ss_pred cCCeeecchhHHHHHHHHHhc--CCCC----CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 141 NEAKVYGREKEKEEIIELLLN--DDLR----ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 141 ~~~~~vG~~~~~~~i~~~L~~--~~~~----~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++++|.++.++++.++... .... +-.-.+-|.|+|..|+||||||+.|.+.
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 356799998887776655431 1000 0001123899999999999999999984
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.94 E-value=0.051 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+|..|.|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998773
No 326
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.94 E-value=0.12 Score=48.11 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.....|.|+|.+|+|||||+..+.+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35568999999999999999998774
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.94 E-value=0.076 Score=49.73 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=20.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|+|.|+.|.||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999773
No 328
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.90 E-value=0.071 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=19.4
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+.|-|.|..|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999998876
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.90 E-value=0.078 Score=49.28 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-++|+|+|..|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457999999999999999999886
No 330
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.89 E-value=0.1 Score=48.74 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+|+|.|+.|.||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 331
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.87 E-value=0.069 Score=51.09 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=21.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|..|.|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999877
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.83 E-value=0.093 Score=52.90 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|..|+||||+++.+..-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 333
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.78 E-value=0.087 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
. .+++|+|.-|.|||||++.+..
T Consensus 24 ~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 24 R-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHT
T ss_pred C-EEEEEECCCCCCHHHHHHHHhC
Confidence 5 7999999999999999999977
No 334
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.74 E-value=0.066 Score=49.56 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=16.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+|.|.|+.|.||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.70 E-value=0.087 Score=50.15 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.1
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|+.|.||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999774
No 336
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.69 E-value=0.092 Score=53.46 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=22.5
Q ss_pred CCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 167 DDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 167 ~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....++|+|+|-||+||||+|..+..-
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHH
Confidence 346799999999999999999888764
No 337
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.56 E-value=0.094 Score=47.82 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.+|+|.|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999874
No 338
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.55 E-value=0.073 Score=51.90 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.5
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|+|.|+.|.||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.46 E-value=0.1 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|+|||||++.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4479999999999999999999874
No 340
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.44 E-value=0.12 Score=52.16 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....+|+|+|.+|+||||++..+..-
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 35689999999999999999998874
No 341
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.32 E-value=0.12 Score=49.52 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+|+|.|+.|.||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999854
No 342
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.30 E-value=0.12 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|.+|+||||++..+..-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998773
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.26 E-value=0.061 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+|+|.|..|.||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998763
No 344
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.24 E-value=0.12 Score=46.88 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|+|+|.+|+|||||.+.+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998764
No 345
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.21 E-value=0.12 Score=51.07 Aligned_cols=25 Identities=32% Similarity=0.315 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...++.+.|.||+||||++..+...
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 5789999999999999999998753
No 346
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.20 E-value=0.11 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|+|+|..|+|||||++.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 347
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.19 E-value=0.093 Score=49.58 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|+|..|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999764
No 348
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.16 E-value=0.1 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|.-|.|||||++.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999987
No 349
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.15 E-value=0.1 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
....|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 350
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.14 E-value=0.13 Score=57.88 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=36.8
Q ss_pred CeeecchhHHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++++|.+..++.+...+..+ ..+.|+|..|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56899999998888888533 48899999999999999999884
No 351
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.14 E-value=0.12 Score=49.14 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|.|+.|.||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998774
No 352
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.11 E-value=0.1 Score=48.89 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|+|.|+.|.||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998773
No 353
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.09 E-value=0.17 Score=46.85 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+..++..- .+-..|-|+|.+|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555555321 13356999999999999999988874
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.06 E-value=0.12 Score=49.81 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCceEEEEeccCCcchHHHHHHHhc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..-.+|+|.|.-|.||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3557999999999999999999877
No 355
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.04 E-value=0.12 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++|+|.|-||+||||+|..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~ 25 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAA 25 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHH
Confidence 478999999999999999988764
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.04 E-value=0.12 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+|.|.|+.|.||||+|+.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 357
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.97 E-value=0.11 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 347999999999999999998874
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.97 E-value=0.11 Score=49.56 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|.|+.|.||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999773
No 359
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.95 E-value=0.13 Score=46.19 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 360
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.93 E-value=0.11 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=20.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|+|.|..|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999988773
No 361
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.91 E-value=0.083 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=16.4
Q ss_pred ceEEEEeccCCcchHHHHHHHh-c
Q 003013 170 FSVISINGMAGVGKTTLAQLVY-N 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~-~ 192 (857)
-.+|+|.|..|.|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 362
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.91 E-value=0.12 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999999975
No 363
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.91 E-value=0.12 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...|.|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.79 E-value=0.12 Score=49.43 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|+|.|+.|.||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999865
No 365
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.77 E-value=0.14 Score=52.85 Aligned_cols=25 Identities=36% Similarity=0.323 Sum_probs=22.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|..|+||||+++.+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999874
No 366
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.73 E-value=0.19 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|.|.|+.|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999865
No 367
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.70 E-value=0.12 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.0
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 368
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.66 E-value=0.12 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=21.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|+.|.||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998774
No 369
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.62 E-value=0.14 Score=54.63 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.4
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|..|+|||||++.+..-
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4679999999999999999998773
No 370
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.62 E-value=0.14 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 369999999999999999999774
No 371
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.60 E-value=0.12 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999773
No 372
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.59 E-value=0.13 Score=48.82 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+|+|.|+.|.||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 373
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.58 E-value=0.11 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+++|+|..|.|||||++.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999773
No 374
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.56 E-value=0.15 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.|+|.||+||||++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999988764
No 375
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.56 E-value=0.14 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|.-|.|||||++.+..
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346999999999999999999976
No 376
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.52 E-value=0.13 Score=49.58 Aligned_cols=24 Identities=25% Similarity=0.562 Sum_probs=21.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 377
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.47 E-value=0.13 Score=47.69 Aligned_cols=22 Identities=41% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998873
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.47 E-value=0.15 Score=51.34 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|.+|+||||++..+..-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998774
No 379
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.45 E-value=0.14 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++|+|.|-||+||||+|..+..-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 68999999999999999988764
No 380
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.42 E-value=0.13 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.3
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|..|.|||||++.+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999988
No 381
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.41 E-value=0.24 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.5
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.|-+.|.||+||||+|-.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 45788999999999998888774
No 382
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.37 E-value=0.13 Score=50.51 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|.-|.|||||++.+..
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36999999999999999999977
No 383
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.28 E-value=0.38 Score=49.18 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=40.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhc---------cC-----CceEEEEeCCCCCHHHHHHHHHHHcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQR---------HY-----EIKAWTCVSEDFDVFGVSKFILNSIA 226 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~---------~F-----d~~~wv~vs~~~~~~~i~~~i~~~l~ 226 (857)
.-.++-|+|..|+||||||.++.-...... .. ..++|++....++.+.+.+ +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 457999999999999999998875422211 11 4678888888787777664 344443
No 384
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.28 E-value=0.14 Score=48.17 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.4
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|+|+|..|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998774
No 385
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.28 E-value=0.15 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|.-|.|||||++.+..
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999976
No 386
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.24 E-value=0.18 Score=47.01 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=22.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+...|.|+|..|+|||||+..+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5678999999999999999998774
No 387
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.21 E-value=0.13 Score=50.82 Aligned_cols=23 Identities=43% Similarity=0.392 Sum_probs=21.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|..|.|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999976
No 388
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.21 E-value=0.16 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|.-|.|||||++.+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHc
Confidence 346999999999999999999977
No 389
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.16 E-value=0.14 Score=49.88 Aligned_cols=24 Identities=42% Similarity=0.519 Sum_probs=21.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999773
No 390
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.16 E-value=0.16 Score=45.85 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-.|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 4457899999999999999998764
No 391
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.13 E-value=0.14 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=21.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999873
No 392
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=90.09 E-value=0.24 Score=57.55 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=39.0
Q ss_pred CeeecchhHHHHHHHHHhcCCC---CCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDL---RADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~---~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.++.++.+...+..... ........+-++|..|+|||++|+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999988888864221 01223447999999999999999999884
No 393
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.09 E-value=0.18 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347999999999999999999977
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.08 E-value=0.15 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=20.9
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
..+|+|.|+.|.||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999876
No 395
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.07 E-value=0.25 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.241 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+|+|+|..|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 457999999999999999999987
No 396
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.05 E-value=0.17 Score=46.93 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|+|+|..|+|||||++.+.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999874
No 397
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.00 E-value=0.14 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.8
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 398
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.99 E-value=0.17 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+..-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3369999999999999999999773
No 399
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=89.95 E-value=0.44 Score=48.68 Aligned_cols=57 Identities=12% Similarity=0.146 Sum_probs=39.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhcc----CCceEEEEeCCCCCHHHHHHHHHHHcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRH----YEIKAWTCVSEDFDVFGVSKFILNSIA 226 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~----Fd~~~wv~vs~~~~~~~i~~~i~~~l~ 226 (857)
.-.++.|+|..|+||||||.++......... =..++|++....++.+.+.+ +++.++
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 4469999999999999999998764222211 23678888877777776653 345443
No 400
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.95 E-value=0.13 Score=49.11 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|.|+.|.||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998763
No 401
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.94 E-value=0.15 Score=50.30 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.3
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.++||+|..|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46999999999999999999977
No 402
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.93 E-value=0.15 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|+|.+|+|||||+..+.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999998764
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.82 E-value=0.14 Score=49.08 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.1
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|.|.|+.|.||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998763
No 404
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.78 E-value=0.18 Score=49.83 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+..-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999883
No 405
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.78 E-value=0.15 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 406
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.75 E-value=0.19 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.0
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.+||-|.|.+|.||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988763
No 407
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.72 E-value=0.18 Score=49.60 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 369999999999999999999773
No 408
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.70 E-value=0.4 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++.+|+|+|..|+|||||.+.+.+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCC
Confidence 5678999999999999999999874
No 409
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.67 E-value=0.32 Score=50.07 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+..+|+|+|.+|+||||++..+..
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 678999999999999999999865
No 410
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.63 E-value=0.18 Score=49.86 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999977
No 411
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.61 E-value=0.19 Score=48.81 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|.|+.|.||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999998876
No 412
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.58 E-value=0.19 Score=49.71 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=21.2
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|..|.|||||++.+..
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36999999999999999999976
No 413
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.58 E-value=0.17 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|.-|.|||||++.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 368999999999999999999773
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.54 E-value=0.17 Score=48.24 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|.|.|+.|.||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 415
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.47 E-value=0.17 Score=48.52 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.|.|.|+.|.||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.46 E-value=0.13 Score=51.57 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+..+|||.|..|.||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 417
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.44 E-value=0.23 Score=45.48 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
++...|.|+|..|+|||||+..+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998764
No 418
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.42 E-value=0.45 Score=49.90 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=36.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFGVSKFILNSIA 226 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~----~Fd~~~wv~vs~~~~~~~i~~~i~~~l~ 226 (857)
.-.++.|+|..|+|||||+..+.-...... .-..++|+.-...++..++.. +++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~-~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVS-IAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHH-HHHHcC
Confidence 447999999999999999997642111111 224577887666666555433 555544
No 419
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.35 E-value=0.14 Score=54.42 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|+|+|.+|+||||+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988774
No 420
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.35 E-value=0.37 Score=50.93 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|+|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 421
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.30 E-value=0.18 Score=50.70 Aligned_cols=24 Identities=38% Similarity=0.307 Sum_probs=21.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+|+|+|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999988764
No 422
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.28 E-value=0.22 Score=45.10 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=20.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+--|.|+|..|+|||||+..+.+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999998864
No 423
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.27 E-value=0.2 Score=50.20 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=25.6
Q ss_pred ceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEe
Q 003013 170 FSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCV 208 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~v 208 (857)
-+++-|+|++|+||||||.++... .-..+.|++.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEe
Confidence 356789999999999999999773 1123556666
No 424
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.22 E-value=0.39 Score=49.52 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=31.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccC---C-ceEEEEeCCCCCHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHY---E-IKAWTCVSEDFDVF 215 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~F---d-~~~wv~vs~~~~~~ 215 (857)
.-.+++|+|..|.|||||++.+.......... . .++|+.-...+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 45899999999999999999987642111111 2 34787765554333
No 425
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.19 E-value=0.19 Score=48.62 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++|+|..|.|||||++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 369999999999999999999864
No 426
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.18 E-value=0.24 Score=45.60 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|.+|+|||||+..+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 5578999999999999999998774
No 427
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.16 E-value=0.37 Score=52.08 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCCC---CCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 151 EKEEIIELLLNDDLR---ADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~---~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.+++.+++-..... ...+..+|.|+|.+|+||||++..+...
T Consensus 79 v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 79 VFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345556666332110 1135789999999999999999998763
No 428
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.15 E-value=0.18 Score=49.87 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++|+|..|.|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
No 429
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.09 E-value=0.22 Score=47.54 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.7
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.....|.|+|.+|+|||||+..+.+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999998774
No 430
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=89.06 E-value=0.4 Score=51.48 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=36.2
Q ss_pred ecchhHHHHHHHHHhcCCCC--C---CCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 146 YGREKEKEEIIELLLNDDLR--A---DDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 146 vG~~~~~~~i~~~L~~~~~~--~---~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.++-.+.|.+.+...... . +++...|+|+|..|+|||||.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 47788888888888643210 1 235678999999999999999998774
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.03 E-value=0.21 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|.|+.|.||||+|+.+.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998763
No 432
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.00 E-value=0.19 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-|.|+|..|+|||||+..+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999998764
No 433
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.96 E-value=0.45 Score=49.02 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=39.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhc----cCCceEEEEeCCCCCHHHHHHHHHHHc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQR----HYEIKAWTCVSEDFDVFGVSKFILNSI 225 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~----~Fd~~~wv~vs~~~~~~~i~~~i~~~l 225 (857)
.-.++.|+|..|+||||||.++........ .=..++|+.....++.+.+.+ ++..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 457999999999999999999876432211 124678888877777776653 34444
No 434
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.96 E-value=0.19 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.9
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|.|+|..|+|||||+..+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998764
No 435
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.95 E-value=0.21 Score=50.39 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|+|+.|+||||||+.+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988773
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.95 E-value=0.19 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=20.9
Q ss_pred ceEEEEeccCCcchHHHHHHHhc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-.+++|+|..|.||||||..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 36999999999999999999876
No 437
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.95 E-value=0.21 Score=49.99 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 447999999999999999999877
No 438
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.90 E-value=0.19 Score=45.27 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
--|.|+|..|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 35899999999999999988653
No 439
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=88.88 E-value=0.24 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|+|+|..|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999764
No 440
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.87 E-value=0.19 Score=46.98 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=21.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..--|.|+|.+|+|||||++.+.+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHT
T ss_pred cccEEEEECCCCCCHHHHHHHHHhh
Confidence 3467899999999999999888764
No 441
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.86 E-value=0.22 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 347999999999999999999876
No 442
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=88.78 E-value=0.26 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
+..+|+|+|..|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999999876
No 443
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.74 E-value=0.21 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.4
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|+|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 444
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.74 E-value=0.23 Score=52.23 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|||+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 557999999999999999999987
No 445
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.72 E-value=0.27 Score=44.74 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcC
Confidence 3457899999999999999998764
No 446
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=88.72 E-value=0.28 Score=45.63 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 5568899999999999999998775
No 447
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.67 E-value=0.21 Score=45.27 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=21.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-.|.|+|..|+|||||+..+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467899999999999999998764
No 448
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.64 E-value=0.21 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+++|+|..|.|||||++.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 449
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.62 E-value=0.24 Score=45.65 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 450
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.59 E-value=0.46 Score=48.89 Aligned_cols=44 Identities=27% Similarity=0.238 Sum_probs=32.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDV 214 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~ 214 (857)
.-.++.|+|..|+||||||.++....... =..++|+.....++.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDP 103 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCH
Confidence 45799999999999999999987642222 135788887776654
No 451
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.57 E-value=0.47 Score=45.55 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhccc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDD 194 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~ 194 (857)
.-..|.|.|+.|.||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44789999999999999999998843
No 452
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=88.52 E-value=0.27 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|+|+|.+|+|||||++.+.++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999998763
No 453
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.48 E-value=0.28 Score=44.89 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 5678999999999999999998775
No 454
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.45 E-value=0.54 Score=48.25 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=32.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 215 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~ 215 (857)
.-.++.|+|..|+||||||.++........ ..++|+.....++..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV 104 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH
Confidence 457999999999999999999887432221 246788776666644
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.43 E-value=0.24 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=21.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...-|.|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 5567899999999999999988774
No 456
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.41 E-value=0.3 Score=47.01 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.8
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+...|.|+|.+|+|||||+..+.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35678999999999999999998774
No 457
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=88.38 E-value=0.22 Score=46.00 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=20.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..-.|.|+|.+|+|||||+..+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467899999999999999776553
No 458
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=88.37 E-value=0.22 Score=45.02 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.|.|+|..|+|||||+..+.+.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999998764
No 459
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.36 E-value=0.23 Score=46.81 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=19.9
Q ss_pred eEEEEe-ccCCcchHHHHHHHhcc
Q 003013 171 SVISIN-GMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~-GmgGvGKTTLa~~v~~~ 193 (857)
++|+|+ +-||+||||+|..+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~ 25 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATA 25 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHH
Confidence 689999 67899999999988774
No 460
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.35 E-value=0.5 Score=48.72 Aligned_cols=45 Identities=22% Similarity=0.189 Sum_probs=33.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceEEEEeCCCCCHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKAWTCVSEDFDVF 215 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~wv~vs~~~~~~ 215 (857)
.-.++-|+|.+|+||||||.++....... =..++|+.....++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH
Confidence 44699999999999999999887643222 2368888887766643
No 461
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.31 E-value=0.23 Score=50.19 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=33.3
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCC-ceEEEEeCCCCCHHHHHHHHHHH
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYE-IKAWTCVSEDFDVFGVSKFILNS 224 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd-~~~wv~vs~~~~~~~i~~~i~~~ 224 (857)
.-.+++|.|..|+|||||++.+....... -. .++|+... .....+.+.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCc--CCHHHHHHHHHHH
Confidence 34699999999999999999987743222 12 34555432 3444555555443
No 462
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=88.29 E-value=0.22 Score=46.54 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
....|.|+|.+|+|||||++.+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 557899999999999999998853
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.27 E-value=0.23 Score=46.06 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..--|.|+|.+|+|||||+..+.++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4467899999999999999887664
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.23 E-value=0.26 Score=47.88 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..|.|.|.-|+||||+++.+.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998874
No 465
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.23 E-value=0.26 Score=49.22 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.+++|+|..|.|||||++.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3469999999999999999999874
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.21 E-value=0.28 Score=51.28 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCCceEEEEec-cCCcchHHHHHHHhcc
Q 003013 166 ADDGFSVISING-MAGVGKTTLAQLVYND 193 (857)
Q Consensus 166 ~~~~~~vi~I~G-mgGvGKTTLa~~v~~~ 193 (857)
++.+.++|+|+| -||+||||+|..+...
T Consensus 139 ~~~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp CTTSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred cCCCceEEEEECCCCCChHHHHHHHHHHH
Confidence 345789999996 8999999999888764
No 467
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.20 E-value=0.23 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|..|+|||||+..+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988764
No 468
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.18 E-value=0.25 Score=45.23 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 5678899999999999999998764
No 469
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.12 E-value=0.32 Score=49.07 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHh
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVY 191 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~ 191 (857)
.+++.+.+ .-.+++|+|..|+|||||++.+.
T Consensus 156 i~~L~~~l---------~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYL---------EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHT---------TTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhc---------cCcEEEEECCCCCCHHHHHHHHH
Confidence 55666666 23689999999999999999997
No 470
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.08 E-value=0.32 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 471
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.07 E-value=0.7 Score=43.88 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=27.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcccchhccCCceE
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYNDDRVQRHYEIKA 204 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~~~~~~~Fd~~~ 204 (857)
....|.|.|..|.||||+++.+.+.......++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 567899999999999999999988533213345444
No 472
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.04 E-value=0.31 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.0
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+|.|+|+.|+||||||..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999988773
No 473
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.02 E-value=0.28 Score=47.80 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=20.9
Q ss_pred CceEEEEec-cCCcchHHHHHHHhcc
Q 003013 169 GFSVISING-MAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~G-mgGvGKTTLa~~v~~~ 193 (857)
..++|+|+| -||+||||+|..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 568999995 4899999999988764
No 474
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=87.99 E-value=0.22 Score=50.21 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEeccCCcchHHHHHHHhc
Q 003013 172 VISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~ 192 (857)
-|+|+|..|+|||||++.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999999886
No 475
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=87.96 E-value=0.29 Score=44.90 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.++
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 5678999999999999999988764
No 476
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.95 E-value=0.23 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.-.+++|+|..|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346999999999999999999976
No 477
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.94 E-value=0.26 Score=45.67 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.9
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.|.|+|.+|+|||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998774
No 478
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.91 E-value=0.25 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-.|.|+|..|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999888654
No 479
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.85 E-value=0.25 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=20.5
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|+|+|.+|+|||||+..+.++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999988763
No 480
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=87.83 E-value=0.33 Score=56.42 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=38.3
Q ss_pred CeeecchhHHHHHHHHHhcCCC---CCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 143 AKVYGREKEKEEIIELLLNDDL---RADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 143 ~~~vG~~~~~~~i~~~L~~~~~---~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..++|.++.++.+...+..... +.+.....+-++|..|+|||++|+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 4588999999888887753210 01224457999999999999999999884
No 481
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=87.81 E-value=0.29 Score=45.71 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCceEEEEeccCCcchHHHHHHHhcc
Q 003013 168 DGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 168 ~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.....|.|+|..|+|||||+..+.+.
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 46778999999999999999998775
No 482
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=87.79 E-value=0.39 Score=43.86 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..--|.|+|.+|+|||||+..+.++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4467899999999999999998764
No 483
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.79 E-value=0.26 Score=50.24 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+.+++|.|+-|.|||||++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 5789999999999999999999864
No 484
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.76 E-value=0.25 Score=44.39 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEeccCCcchHHHHHHHhcc
Q 003013 172 VISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 172 vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
-|.|+|..|+|||||+..+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998653
No 485
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=87.69 E-value=0.29 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.1
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999998764
No 486
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=87.67 E-value=0.19 Score=47.61 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-..|+|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988764
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.61 E-value=0.28 Score=49.65 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEeccCCcchHHHHHHHhc
Q 003013 171 SVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
.+|.|.|+.|.||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.55 E-value=0.32 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=22.2
Q ss_pred CceEEEEeccCCcchHHHHHHHhc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYN 192 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~ 192 (857)
...+|+|+|..|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999999876
No 489
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=87.55 E-value=0.27 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.7
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...|.|+|..|+|||||+..+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999998763
No 490
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=87.54 E-value=0.27 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.6
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...-|.|+|..|+|||||+..+.+.
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999998764
No 491
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=87.52 E-value=0.34 Score=45.55 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.8
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998764
No 492
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.51 E-value=0.42 Score=48.22 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 151 EKEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 151 ~~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
..+++..++ .-.+++|+|..|+|||||.+.+...
T Consensus 159 gv~~lf~~l---------~geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 159 GIEELKEYL---------KGKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp THHHHHHHH---------SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CHHHHHHHh---------cCCeEEEECCCCCcHHHHHHHhccc
Confidence 456677777 2358999999999999999999773
No 493
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.51 E-value=0.59 Score=43.10 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=21.9
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||...+.+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998753
No 494
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.50 E-value=0.38 Score=56.66 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=38.2
Q ss_pred eeecchhHHHHHHHHHhcCC---CCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 144 KVYGREKEKEEIIELLLNDD---LRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 144 ~~vG~~~~~~~i~~~L~~~~---~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.++|.++.++.+...+.... .+.+.....+-|+|..|+|||++|+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999888888875421 001234568999999999999999999884
No 495
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.44 E-value=0.32 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred eEEEEeccCCcchHHHHHHHhcc
Q 003013 171 SVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 171 ~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.+|.|.|..|+||||||..+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999998763
No 496
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=87.35 E-value=0.28 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred ceEEEEeccCCcchHHHHHHHhcc
Q 003013 170 FSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 170 ~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.--|.|+|..|+|||||+..+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998764
No 497
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.35 E-value=0.27 Score=50.58 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
.-.++||+|..|+|||||++.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4479999999999999999999885
No 498
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.33 E-value=0.28 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
....|.|+|..|+|||||+..+.++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 4567899999999999999998764
No 499
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=87.33 E-value=0.57 Score=45.60 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEeccCCcchHHHHHHHhcc
Q 003013 152 KEEIIELLLNDDLRADDGFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 152 ~~~i~~~L~~~~~~~~~~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
...+..||.... .+-.-|-++|.+|.|||++|.++.+.
T Consensus 90 ~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344666674321 24467999999999999999999873
No 500
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=87.31 E-value=5.2 Score=41.26 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=22.5
Q ss_pred CceEEEEeccCCcchHHHHHHHhcc
Q 003013 169 GFSVISINGMAGVGKTTLAQLVYND 193 (857)
Q Consensus 169 ~~~vi~I~GmgGvGKTTLa~~v~~~ 193 (857)
+...|+|+|..|+|||||...+...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999999998774
Done!