Your job contains 1 sequence.
>003014
MNKLEAVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPP
GLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTY
PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG
LSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTA
HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKK
YYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGG
RDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGL
QNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKEL
PKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDID
HSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSML
REKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARRE
EQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPK
LEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKT
VLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSS
TDGGRPPSSSRRNQERR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003014
(857 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1RM10 - symbol:TCERG1 "Uncharacterized protein... 278 4.7e-40 3
UNIPROTKB|F1NT10 - symbol:TCERG1 "Uncharacterized protein... 283 1.1e-39 3
UNIPROTKB|O14776 - symbol:TCERG1 "Transcription elongatio... 278 1.4e-39 3
UNIPROTKB|F1MKU9 - symbol:TCERG1 "Uncharacterized protein... 278 3.7e-39 4
MGI|MGI:1926421 - symbol:Tcerg1 "transcription elongation... 278 9.5e-39 3
RGD|1311748 - symbol:Tcerg1 "transcription elongation reg... 278 1.1e-38 3
WB|WBGene00022855 - symbol:tcer-1 species:6239 "Caenorhab... 241 1.9e-28 3
UNIPROTKB|F1NQH4 - symbol:PRPF40A "Uncharacterized protei... 318 2.4e-27 2
ZFIN|ZDB-GENE-030131-274 - symbol:prpf40a "PRP40 pre-mRNA... 178 1.7e-26 3
TAIR|locus:2194894 - symbol:PRP40A "pre-mRNA-processing p... 287 1.9e-26 3
MGI|MGI:1860512 - symbol:Prpf40a "PRP40 pre-mRNA processi... 171 1.3e-24 3
RGD|1311401 - symbol:Prpf40a "PRP40 pre-mRNA processing f... 171 2.7e-24 3
UNIPROTKB|F1RQH2 - symbol:PRPF40A "Uncharacterized protei... 170 2.8e-24 3
UNIPROTKB|O75400 - symbol:PRPF40A "Pre-mRNA-processing fa... 170 4.4e-24 3
UNIPROTKB|G3MZC7 - symbol:PRPF40A "Uncharacterized protei... 170 1.2e-23 3
MGI|MGI:1917821 - symbol:Tcerg1l "transcription elongatio... 215 3.5e-18 3
TAIR|locus:2091171 - symbol:PRP40B "pre-mRNA-processing p... 167 8.9e-16 4
UNIPROTKB|F5H578 - symbol:PRPF40A "Pre-mRNA-processing fa... 168 1.4e-15 2
FB|FBgn0261641 - symbol:CG42724 species:7227 "Drosophila ... 190 2.9e-15 3
UNIPROTKB|Q6NWY9 - symbol:PRPF40B "Pre-mRNA-processing fa... 140 6.4e-15 3
MGI|MGI:1925583 - symbol:Prpf40b "PRP40 pre-mRNA processi... 136 3.4e-14 3
WB|WBGene00022853 - symbol:ZK1127.6 species:6239 "Caenorh... 146 3.7e-14 2
WB|WBGene00014218 - symbol:ZK1098.1b species:6239 "Caenor... 120 1.2e-12 3
DICTYBASE|DDB_G0283543 - symbol:prp40 "FF domain-containi... 144 1.1e-10 3
UNIPROTKB|G4MWS5 - symbol:MGG_08329 "DNA replication prot... 112 2.8e-10 3
ASPGD|ASPL0000052549 - symbol:AN1249 species:162425 "Emer... 130 3.1e-10 3
UNIPROTKB|H0YG38 - symbol:PRPF40A "Pre-mRNA-processing fa... 168 2.0e-09 1
CGD|CAL0003333 - symbol:orf19.3250 species:5476 "Candida ... 141 2.1e-09 2
FB|FBgn0031492 - symbol:CG3542 species:7227 "Drosophila m... 112 4.8e-09 2
POMBASE|SPAC4D7.13 - symbol:usp104 "U1 snRNP-associated p... 128 4.9e-09 3
ZFIN|ZDB-GENE-050522-342 - symbol:zgc:112384 "zgc:112384"... 166 2.8e-08 2
POMBASE|SPAC13C5.02 - symbol:dre4 "splicing associated fa... 99 1.6e-07 3
SGD|S000001495 - symbol:PRP40 "U1 snRNP protein involved ... 121 3.5e-07 3
MGI|MGI:2179723 - symbol:Casc3 "cancer susceptibility can... 147 1.5e-06 1
RGD|628766 - symbol:Casc3 "cancer susceptibility candidat... 145 2.5e-06 1
UNIPROTKB|Q5F457 - symbol:WBP4 "WW domain-binding protein... 143 4.3e-06 2
UNIPROTKB|F1NXG2 - symbol:WBP4 "WW domain-binding protein... 142 5.6e-06 2
UNIPROTKB|E2R5K5 - symbol:CASC3 "Uncharacterized protein"... 139 1.1e-05 1
UNIPROTKB|O15234 - symbol:CASC3 "Protein CASC3" species:9... 138 1.4e-05 1
MGI|MGI:1913401 - symbol:Prr13 "proline rich 13" species:... 110 2.7e-05 1
UNIPROTKB|F1NI65 - symbol:SHISA5 "Uncharacterized protein... 108 4.5e-05 1
UNIPROTKB|F1SKK9 - symbol:SHISA5 "Uncharacterized protein... 108 4.5e-05 1
RGD|1308627 - symbol:Sf3a2 "splicing factor 3a, subunit 2... 129 7.5e-05 1
UNIPROTKB|F1RXC7 - symbol:CASC3 "Uncharacterized protein"... 129 0.00011 1
TAIR|locus:2143241 - symbol:AT5G15780 "AT5G15780" species... 126 0.00012 1
UNIPROTKB|F1NPB1 - symbol:F1NPB1 "Uncharacterized protein... 127 0.00015 1
SGD|S000006356 - symbol:URN1 "Putative protein of unknown... 107 0.00017 3
UNIPROTKB|A5D7H5 - symbol:CASC3 "Protein CASC3" species:9... 127 0.00022 1
UNIPROTKB|Q8N114 - symbol:SHISA5 "Protein shisa-5" specie... 119 0.00023 1
UNIPROTKB|B7Z4M2 - symbol:WBP4 "cDNA FLJ52917, highly sim... 121 0.00034 1
UNIPROTKB|Q17QQ6 - symbol:WBP4 "Uncharacterized protein" ... 117 0.00035 2
UNIPROTKB|O75554 - symbol:WBP4 "WW domain-binding protein... 121 0.00038 1
UNIPROTKB|Q5ZIS9 - symbol:Shisa5 "Protein shisa-5" specie... 101 0.00050 1
ZFIN|ZDB-GENE-050222-4 - symbol:tcf7 "transcription facto... 99 0.00068 2
UNIPROTKB|Q9DEG2 - symbol:avenaII "Uncharacterized protei... 120 0.00081 1
FB|FBgn0013949 - symbol:Ela "Elastin-like" species:7227 "... 117 0.00083 1
UNIPROTKB|E1BYV9 - symbol:ENAH "Uncharacterized protein" ... 120 0.00090 1
>UNIPROTKB|F1RM10 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 KO:K12824 OMA:MEEMNED EMBL:CU462939
EMBL:FP015780 RefSeq:XP_003354387.2 Ensembl:ENSSSCT00000015755
GeneID:100621703 KEGG:ssc:100621703 Uniprot:F1RM10
Length = 1068
Score = 278 (102.9 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 67/184 (36%), Positives = 93/184 (50%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 635 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 693
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 578
FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 694 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 751
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 752 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 810
Query: 638 NEYV 641
+Y+
Sbjct: 811 KQYI 814
Score = 158 (60.7 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
+R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 865 KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEAL 923
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 924 TKKKREHFRQLLDETSAI-----------TLTSTWKEVKKIIKEDPRCIKFSSSDRKKQ- 971
Query: 811 RRHAEEIQRKH 821
R E I+ K+
Sbjct: 972 REFEEYIRDKY 982
Score = 126 (49.4 bits), Expect = 4.7e-40, Sum P(3) = 4.7e-40
Identities = 64/220 (29%), Positives = 89/220 (40%)
Query: 65 TPQTQAP-PGLLTLRTKDT-SSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPS 122
TP T +P P + T + T SS +++ + +V TP+ + S+ PT
Sbjct: 230 TPTTSSPAPAVSTSASSSTPSSTTSTTTTASSVSQTVSTPTTQDQTPSSAVSVATPT--- 286
Query: 123 LPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPN-PSVSQIDAQ-P-P 179
+ VS P P Q +P LP PA P P PA +P P V + P P
Sbjct: 287 ---VSVSTPAPTATPVQTVPQPHPQTLP-PAV-PHSVPQPAAAIPAFPPVMVPPFRVPLP 341
Query: 180 GLSSVRTAAATSHS-AIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDA- 237
G+ A + P + V T+ P +H + I AS A
Sbjct: 342 GMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVA-IAASPATLAGAT 400
Query: 238 ----WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKV 273
WT +KT G YYYN T EST+EKP K E +K+
Sbjct: 401 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK-EKEKL 439
Score = 120 (47.3 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 46/147 (31%), Positives = 59/147 (40%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
P+ PP V +GP PP M RP PF P P P P G P + PPG
Sbjct: 32 PAPPPNAVM-RGP---PPLM--RPPPPFGMMRG--PPPPPRPPFGRPPFDPNMPPMPPPG 83
Query: 181 LSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTA 240
+ H P + T PP G + V++ ++ + W
Sbjct: 84 --GIPPPMGPPHLQRP--PFMPPPMGTMPPPPGMMFPPGMPPVTAAGAPALPPTEEIWVE 139
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFK 267
+KT G VYYYNA T ES + KP G K
Sbjct: 140 NKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 117 (46.2 bits), Expect = 6.3e-22, Sum P(4) = 6.3e-22
Identities = 40/167 (23%), Positives = 69/167 (41%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 702 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTR 761
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKD-RELLLNERVLPLXX 579
F +LL + +D + + K K SDPR++A+D RE L + + +
Sbjct: 762 GEKIKSDFFELLS--NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKMAK 819
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 626
+ ++ LRE+ +R + K+I R+ ++K
Sbjct: 820 NLDSEKEKELERQ-ARIEASLREREREVQKARSEQTKEIDREREQHK 865
Score = 114 (45.2 bits), Expect = 4.3e-15, Sum P(4) = 4.3e-15
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 528 FKQLLEEV--SEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLXXXXXX 583
FK LL ++ S D+ S +T +K +W S L+R+++E L NE + L
Sbjct: 873 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESG---SLLEREEKEKLFNEHIEALTKKKR- 928
Query: 584 XXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVI--FNEYV 641
F+ +L E ITL+S W +VK I+++DPR DR+ F EY+
Sbjct: 929 ----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYI 978
Score = 96 (38.9 bits), Expect = 8.5e-20, Sum P(4) = 8.5e-20
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 427 DKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIK-FKEMLKERGVAPFSKWEKELPKIVF 485
+K+KD T+ E I F E+L + S+W K K+
Sbjct: 734 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 793
Query: 486 DPRFKAIQSQSARRALFERYVK 507
DPR+KA+ S S R LF++Y++
Sbjct: 794 DPRYKAVDSSSMREDLFKQYIE 815
Score = 92 (37.4 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 32/146 (21%), Positives = 68/146 (46%)
Query: 694 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYER 753
+A F+ ++ E +P+A+++E K KD + +A DRE LF E + ++
Sbjct: 697 QAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK---MKDREALFNEFVAAARKK 753
Query: 754 CAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE-REALWRR 812
D + E I ++ + + WS K ++ +PRY + RE L+++
Sbjct: 754 EKEDSK-TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQ 812
Query: 813 HAEEIQRKHKSSLDQNEDNHKDSKSR 838
+ E++ + +LD ++ + ++R
Sbjct: 813 YIEKMAK----NLDSEKEKELERQAR 834
Score = 90 (36.7 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 759 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 815
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE 776
+ + + L EA+ +E E
Sbjct: 816 KMAKNLDSEKEKELERQARIEASLRERE 843
Score = 80 (33.2 bits), Expect = 2.5e-35, Sum P(4) = 2.5e-35
Identities = 22/62 (35%), Positives = 27/62 (43%)
Query: 259 TYEKPAGFKGEPDKVPVQPTPISMEHLTGTD--WALVTTNDGKKYYYNSKMKVSSWQIPS 316
T P G P PV T L T+ W T DGK YYYN++ + S+W P
Sbjct: 106 TMPPPPGMMFPPGMPPV--TAAGAPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPD 163
Query: 317 EV 318
V
Sbjct: 164 GV 165
Score = 77 (32.2 bits), Expect = 4.1e-31, Sum P(4) = 4.1e-31
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 699 FQALLVETIKDPQAS-WTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCA 755
F+ LL ET S W E + +++DP R SSDR+K F E+I+ Y
Sbjct: 931 FRQLLDETSAITLTSTWKEVKKIIKEDP--RCIK--FSSSDRKKQREFEEYIRDKYITAK 986
Query: 756 HDFRGLLAEV--ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMP--RKEREALWR 811
DFR LL E IT + E + + + +++L+ + RY + +ER L
Sbjct: 987 ADFRTLLKETKFITYRSKKLIQESDQHLKD----VEKILQNDKRYLVLDCVPEERRKLIV 1042
Query: 812 RHAEEIQRK 820
+ +++ R+
Sbjct: 1043 AYVDDLDRR 1051
Score = 76 (31.8 bits), Expect = 5.2e-31, Sum P(4) = 5.2e-31
Identities = 27/140 (19%), Positives = 60/140 (42%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREK-LFREHIKTL 750
R++ + + + + + E + ++E + R S++ K + RE +
Sbjct: 806 REDLFKQYIEKMAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 865
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKERE 807
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 866 REEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKE 913
Query: 808 ALWRRHAEEIQRKHKSSLDQ 827
L+ H E + +K + Q
Sbjct: 914 KLFNEHIEALTKKKREHFRQ 933
Score = 75 (31.5 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 23/64 (35%), Positives = 30/64 (46%)
Query: 118 PTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAY--PSPFPLPAHGMPNPSVSQID 175
P P +PP G P P + PP + RP PF+P P P P + GMP + +
Sbjct: 74 PNMPPMPPPGGIP--PPMGPPHLQ-RP--PFMPPPMGTMPPPPGMMFPPGMPPVTAAGAP 128
Query: 176 AQPP 179
A PP
Sbjct: 129 ALPP 132
Score = 74 (31.1 bits), Expect = 4.0e-35, Sum P(4) = 4.0e-35
Identities = 27/75 (36%), Positives = 30/75 (40%)
Query: 118 PTYPSLPPIGVSPQGPLL--RPPQMGVRPWLPFLPYPAAYPSPF-PLPAHGMPNPSVSQI 174
P P PP G P P + PP G+ P P P P PF P P MP P
Sbjct: 59 PPPPPRPPFGRPPFDPNMPPMPPPGGIPP--PMGP-PHLQRPPFMPPPMGTMPPPPGMMF 115
Query: 175 DAQPPGLSSVRTAAA 189
PPG+ V A A
Sbjct: 116 ---PPGMPPVTAAGA 127
Score = 74 (31.1 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 33/137 (24%), Positives = 59/137 (43%)
Query: 704 VETIKDPQA---SWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 760
+ IK+ Q E P K + R N D+DS ++E IK ER
Sbjct: 574 MSAIKEEQELMEEMNEDEPVKAKKRK-RDDNKDIDS-EKEAAMEAEIKAARERAI----- 626
Query: 761 LLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRH----AEE 816
+ E + E G + ++W + +PRY + KER+ ++ ++ AEE
Sbjct: 627 VPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEE 686
Query: 817 IQRKHKSSLDQNEDNHK 833
+R+ K+ + Q +++ K
Sbjct: 687 ERREKKNKIMQAKEDFK 703
Score = 57 (25.1 bits), Expect = 0.00046, Sum P(3) = 0.00046
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVF-DPR-FKAIQSQSARRALFERYVK 507
F+++L E + KE+ KI+ DPR K S ++ FE Y++
Sbjct: 931 FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIR 979
Score = 52 (23.4 bits), Expect = 7.4e-33, Sum P(4) = 7.4e-33
Identities = 21/68 (30%), Positives = 25/68 (36%)
Query: 94 GLRPSVPT-PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
G P P P P G I + P + PP P G + PP M P +P P
Sbjct: 68 GRPPFDPNMPPMPPPGG--IPPPMGPPHLQRPPFMPPPMGTMPPPPGMMFPPGMP--PVT 123
Query: 153 AAYPSPFP 160
AA P
Sbjct: 124 AAGAPALP 131
Score = 47 (21.6 bits), Expect = 3.2e-35, Sum P(4) = 3.2e-35
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVPVQP 277
W T V++YN T S +++P G + DK+ +P
Sbjct: 504 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 545
Score = 43 (20.2 bits), Expect = 1.9e-39, Sum P(4) = 1.9e-39
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 309 VSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNIVIEKGSNAISLSSP--AVNTGGRDATAL 366
VS+ S Q+V + S+A+S+++P +V+T AT +
Sbjct: 240 VSTSASSSTPSSTTSTTTTASSVSQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPV 299
Query: 367 RTSSMP 372
+T P
Sbjct: 300 QTVPQP 305
Score = 39 (18.8 bits), Expect = 4.7e-14, Sum P(4) = 4.7e-14
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 601 REKGDITLSSRWSKVKDIL--RDDPRYKSVRHEDREVIFN 638
RE+ + L +R + KD+L R + + E +++F+
Sbjct: 622 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 661
>UNIPROTKB|F1NT10 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] [GO:0001106 "RNA
polymerase II transcription corepressor activity" evidence=IEA]
[GO:0070064 "proline-rich region binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:MEEMNED
EMBL:AADN02028198 EMBL:AADN02028199 IPI:IPI00584064
Ensembl:ENSGALT00000012177 Uniprot:F1NT10
Length = 1019
Score = 283 (104.7 bits), Expect = 1.1e-39, Sum P(3) = 1.1e-39
Identities = 74/219 (33%), Positives = 102/219 (46%)
Query: 426 KDKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIK-FKEMLKERGVAPFSKWEKELPKIV 484
KD KDI+ E +K FK+ML ERGV+ FS WEKEL KIV
Sbjct: 551 KDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIV 610
Query: 485 FDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTD 544
FDPR+ + + R+ +F++YVKT FK+++EE I+ T
Sbjct: 611 FDPRYLLLNPKE-RKQVFDQYVKTRAEEERKEKKNKIMQAKEDFKKMMEE--SKINPRTT 667
Query: 545 YQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLXXXXXXXXXXXXXXXXSSFKSMLREK 603
+ F K D RF+A+++ KDRE L NE + F +L
Sbjct: 668 FSEFAAKHAKDSRFKAIEKMKDREALFNEFITAARKKEKEDSKTRGEKIKMDFFELLANH 727
Query: 604 GDITLSSRWSKVKDILRDDPRYKSV-RHEDREVIFNEYV 641
+ SRWSKVKD + DPRYK+V RE +F +Y+
Sbjct: 728 -HLDSQSRWSKVKDKVETDPRYKAVDSSSQREDLFKQYI 765
Score = 158 (60.7 bits), Expect = 1.1e-39, Sum P(3) = 1.1e-39
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
+R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 816 KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEAL 874
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 875 TKKKREHFRQLLDETSAI-----------TLTSTWKEVKKIIKEDPRCIKFSSSDRKKQ- 922
Query: 811 RRHAEEIQRKH 821
R E I+ K+
Sbjct: 923 REFEEYIRDKY 933
Score = 117 (46.2 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 36/166 (21%), Positives = 69/166 (41%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
FK+M++E + P + + + K D RFKAI+ R ALF ++
Sbjct: 653 FKKMMEESKINPRTTFSEFAAKHAKDSRFKAIEKMKDREALFNEFITAARKKEKEDSKTR 712
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLXXX 580
F +LL + +D + + K K +DPR++A+D + L ++ +
Sbjct: 713 GEKIKMDFFELL--ANHHLDSQSRWSKVKDKVETDPRYKAVDSSSQREDLFKQYIEKIAK 770
Query: 581 XXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 626
+ ++ LRE+ +R + K+I R+ ++K
Sbjct: 771 NLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 816
Score = 116 (45.9 bits), Expect = 1.1e-39, Sum P(3) = 1.1e-39
Identities = 77/325 (23%), Positives = 121/325 (37%)
Query: 10 AGLGSSTSTNSQPVQASVRXXXXXXXXXXXXXXXXXXXXWMPTIPSFSTPPGLFVTPQTQ 69
A +G+ST T S A+ STP T Q Q
Sbjct: 178 AQVGASTPTTSSAAAAASPSTSSSTQSSTTSTTTTATSVSQTN----STP-----TTQDQ 228
Query: 70 APPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQI-YPT--YPSLPPI 126
P +++ T S + SA +VP P P A+ H + PT P+ PP+
Sbjct: 229 TPSSGVSVATPSVSVSTSA--PSATPVQTVPQP-VPQTLPPAVPHAVPQPTAAIPAFPPV 285
Query: 127 GVSP-QGPL--LRPPQMGVRPW-LPFLPY--PAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
V P + PL + P GV + PY A LP GM P V I Q
Sbjct: 286 MVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLP--GMAPPIVPMIHPQVAI 343
Query: 181 LSSVRT-AAATSHSAIPGHQLV-GTSG--NTEAPPSGTDKKEHVHDVSSRIGASVNEQLD 236
+S T A AT+ S ++ G + N S +K + + + ++ + E +
Sbjct: 344 AASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKE-KEKLEEKIKETIK 402
Query: 237 AWTAHKT--DTGIVYYYNAVTGESTYEKPAGFK-GEPDKVPVQPTPISMEHLTGTDWALV 293
T +T E E+P + E +K + P++ + GT W +V
Sbjct: 403 EPTEEPLPMETEEEEPKEEPIKELIKEEPKEEEMTEEEKAAQKAKPVATTPIPGTPWCVV 462
Query: 294 TTNDGKKYYYNSKMKVSSWQIPSEV 318
T D + ++YN ++S W P ++
Sbjct: 463 WTGDERVFFYNPTTRLSMWDRPDDL 487
Score = 115 (45.5 bits), Expect = 1.5e-39, Sum P(3) = 1.5e-39
Identities = 70/274 (25%), Positives = 104/274 (37%)
Query: 102 PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPL 161
P P+ A Q + P+ PP V +GP PP M RP PF P P P
Sbjct: 10 PQPPTAVRMAQQQALRFRGPAPPPNAVM-RGP---PPLM--RPPPPFGMMRG--PPPPPR 61
Query: 162 PAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVH 221
P G P + PPG + H P + G+ PP G +
Sbjct: 62 PPFGRPPFDPNMPPMPPPG--GIPPPMGPPHLQRPPF-MPPPMGSMPPPP-GMMFPPGMP 117
Query: 222 DVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP-I 280
V++ ++ + W +KT G VY+YNA T ES + KP G K + TP +
Sbjct: 118 PVTAPGTPAMPPAEEIWVENKTPDGKVYFYNARTRESAWTKPDGVKVIQQS---ELTPML 174
Query: 281 SMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNI 340
+ + G + TT+ S SS Q + S P T
Sbjct: 175 AAQAQVGA--STPTTSSAAAAA--SPSTSSSTQSST---TSTTTTATSVSQTNSTPTTQD 227
Query: 341 VIEKGSNAISLSSPAVN--TGGRDATALRTSSMP 372
+ S+ +S+++P+V+ T AT ++T P
Sbjct: 228 --QTPSSGVSVATPSVSVSTSAPSATPVQTVPQP 259
Score = 114 (45.2 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 528 FKQLLEEV--SEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLXXXXXX 583
FK LL ++ S D+ S +T +K +W S L+R+++E L NE + L
Sbjct: 824 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESG---SLLEREEKEKLFNEHIEALTKKKR- 879
Query: 584 XXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVI--FNEYV 641
F+ +L E ITL+S W +VK I+++DPR DR+ F EY+
Sbjct: 880 ----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYI 929
Score = 100 (40.3 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 36/148 (24%), Positives = 71/148 (47%)
Query: 694 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYER 753
+A F+ ++ E+ +P+ +++E K KD + +A DRE LF E I ++
Sbjct: 648 QAKEDFKKMMEESKINPRTTFSEFAAKHAKDSRFKAIEK---MKDREALFNEFITAARKK 704
Query: 754 CAHDF--RGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRK-EREALW 810
D RG ++ E A D ++ WS K ++ +PRY + +RE L+
Sbjct: 705 EKEDSKTRGEKIKMDFFELLANHHLDSQS---RWSKVKDKVETDPRYKAVDSSSQREDLF 761
Query: 811 RRHAEEIQRKHKSSLDQNEDNHKDSKSR 838
+++ E+I + +LD ++ + ++R
Sbjct: 762 KQYIEKIAK----NLDSEKEKELERQAR 785
Score = 98 (39.6 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 427 DKLKDINXXXXXXXXXXXXXXXXXXPTKEECI-IKFKEMLKERGVAPFSKWEKELPKIVF 485
+K+KD T+ E I + F E+L + S+W K K+
Sbjct: 685 EKMKDREALFNEFITAARKKEKEDSKTRGEKIKMDFFELLANHHLDSQSRWSKVKDKVET 744
Query: 486 DPRFKAIQSQSARRALFERYVK 507
DPR+KA+ S S R LF++Y++
Sbjct: 745 DPRYKAVDSSSQREDLFKQYIE 766
Score = 92 (37.4 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 710 KTRGEKIKMDFFELLANHHLDSQSRWSKVKDKVETDPRYKAVDS---SSQREDLFKQYIE 766
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE 776
+ + + L EA+ +E E
Sbjct: 767 KIAKNLDSEKEKELERQARIEASLRERE 794
Score = 77 (32.2 bits), Expect = 3.0e-31, Sum P(3) = 3.0e-31
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 699 FQALLVETIKDPQAS-WTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCA 755
F+ LL ET S W E + +++DP R SSDR+K F E+I+ Y
Sbjct: 882 FRQLLDETSAITLTSTWKEVKKIIKEDP--RCIK--FSSSDRKKQREFEEYIRDKYITAK 937
Query: 756 HDFRGLLAEV--ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMP--RKEREALWR 811
DFR LL E IT + E + + + +++L+ + RY + +ER L
Sbjct: 938 ADFRTLLKETKFITYRSKKLIQESDQHLKD----VEKILQNDKRYLVLDCVPEERRKLIV 993
Query: 812 RHAEEIQRK 820
+ +++ R+
Sbjct: 994 SYVDDLDRR 1002
Score = 77 (32.2 bits), Expect = 3.0e-31, Sum P(3) = 3.0e-31
Identities = 27/141 (19%), Positives = 61/141 (43%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREK-LFREHIKT 749
+R++ + + + + + E + ++E + R S++ K + RE +
Sbjct: 756 QREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQH 815
Query: 750 LYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKER 806
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+
Sbjct: 816 KREEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEK 863
Query: 807 EALWRRHAEEIQRKHKSSLDQ 827
E L+ H E + +K + Q
Sbjct: 864 EKLFNEHIEALTKKKREHFRQ 884
Score = 71 (30.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 30/129 (23%), Positives = 58/129 (44%)
Query: 716 ESRP-KLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQE 774
E P K++K + + N D+DS ++E IK ER + E +
Sbjct: 540 EDEPIKIKK--RKKDDNKDIDS-EKEAAMEAEIKAARERAI-----VPLEARMKQFKDML 591
Query: 775 TEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRH----AEEIQRKHKSSLDQNED 830
E G + ++W + +PRY + KER+ ++ ++ AEE +++ K+ + Q ++
Sbjct: 592 LERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERKEKKNKIMQAKE 651
Query: 831 NHKDSKSRS 839
+ K S
Sbjct: 652 DFKKMMEES 660
Score = 57 (25.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVF-DPR-FKAIQSQSARRALFERYVK 507
F+++L E + KE+ KI+ DPR K S ++ FE Y++
Sbjct: 882 FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIR 930
Score = 52 (23.4 bits), Expect = 1.5e-33, Sum P(4) = 1.5e-33
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 94 GLRPSVPT-PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
G P P P P G I + P + PP P G + PP M P +P + P
Sbjct: 65 GRPPFDPNMPPMPPPGG--IPPPMGPPHLQRPPFMPPPMGSMPPPPGMMFPPGMPPVTAP 122
Query: 153 AAYPSP 158
P
Sbjct: 123 GTPAMP 128
Score = 47 (21.6 bits), Expect = 1.5e-33, Sum P(4) = 1.5e-33
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVPVQP 277
W T V++YN T S +++P G + DK+ +P
Sbjct: 459 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 500
Score = 43 (20.2 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 19/82 (23%), Positives = 31/82 (37%)
Query: 50 MPTIPSFSTPPGL--FVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSN 107
MP P PPG+ P T A P + ++ + ++ +A R S T P
Sbjct: 104 MPPPPGMMFPPGMPPVTAPGTPAMPPAEEIWVENKTPDGKVYFYNARTRESAWTK--PDG 161
Query: 108 SGSAIQHQIYPTYPSLPPIGVS 129
Q ++ P + +G S
Sbjct: 162 VKVIQQSELTPMLAAQAQVGAS 183
Score = 37 (18.1 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 3/19 (15%), Positives = 15/19 (78%)
Query: 615 VKDILRDDPRYKSVRHEDR 633
+K++++++P+ + + E++
Sbjct: 423 IKELIKEEPKEEEMTEEEK 441
>UNIPROTKB|O14776 [details] [associations]
symbol:TCERG1 "Transcription elongation regulator 1"
species:9606 "Homo sapiens" [GO:0070064 "proline-rich region
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=IPI] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=IDA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0005634 GO:GO:0003713
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
eggNOG:COG5104 EMBL:AF017789 EMBL:AB209910 EMBL:BC111727
IPI:IPI00247871 IPI:IPI00744062 PIR:T08599 RefSeq:NP_001035095.1
RefSeq:NP_006697.2 UniGene:Hs.735127 PDB:2DK7 PDB:2DOD PDB:2DOE
PDB:2DOF PDB:2E71 PDB:2KIQ PDB:2KIS PDB:2NNT PDB:3HFH PDBsum:2DK7
PDBsum:2DOD PDBsum:2DOE PDBsum:2DOF PDBsum:2E71 PDBsum:2KIQ
PDBsum:2KIS PDBsum:2NNT PDBsum:3HFH ProteinModelPortal:O14776
SMR:O14776 IntAct:O14776 MINT:MINT-158391 STRING:O14776
PhosphoSite:O14776 PaxDb:O14776 PRIDE:O14776
Ensembl:ENST00000296702 Ensembl:ENST00000394421 GeneID:10915
KEGG:hsa:10915 UCSC:uc003lob.3 UCSC:uc003loc.3 CTD:10915
GeneCards:GC05P145807 HGNC:HGNC:15630 MIM:605409 neXtProt:NX_O14776
PharmGKB:PA38007 HOGENOM:HOG000008544 HOVERGEN:HBG062908
InParanoid:O14776 KO:K12824 OMA:MEEMNED OrthoDB:EOG40CHGM
PhylomeDB:O14776 EvolutionaryTrace:O14776 GenomeRNAi:10915
NextBio:41457 ArrayExpress:O14776 Bgee:O14776 CleanEx:HS_TCERG1
Genevestigator:O14776 GermOnline:ENSG00000113649 Uniprot:O14776
Length = 1098
Score = 278 (102.9 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 67/184 (36%), Positives = 93/184 (50%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 665 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 723
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 578
FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 724 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 781
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 782 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 840
Query: 638 NEYV 641
+Y+
Sbjct: 841 KQYI 844
Score = 158 (60.7 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
+R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 895 KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEAL 953
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 954 TKKKREHFRQLLDETSAI-----------TLTSTWKEVKKIIKEDPRCIKFSSSDRKKQ- 1001
Query: 811 RRHAEEIQRKH 821
R E I+ K+
Sbjct: 1002 REFEEYIRDKY 1012
Score = 122 (48.0 bits), Expect = 1.4e-39, Sum P(3) = 1.4e-39
Identities = 76/331 (22%), Positives = 122/331 (36%)
Query: 7 VEDAGLGSSTSTNSQPVQASVRXXXXXXXXXXXXXXXXXXXXWMPTIPSFSTPPGLFVTP 66
V+ +G+ST T S P A V T+ STP T
Sbjct: 251 VQAQAVGASTPTTSSPAPA-VSTSTSSSTPSSTTSTTTTATSVAQTV---STP-----TT 301
Query: 67 QTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQI-YPT--YPSL 123
Q Q P +++ T T S ++ ++ +VP P P A+ H + PT P+
Sbjct: 302 QDQTPSSAVSVATP-TVSVSTPAPTATPVQ-TVPQPH-PQTLPPAVPHSVPQPTTAIPAF 358
Query: 124 PPIGVSP-QGPL--LRPPQMGVRPW-LPFLPY--PAAYPSPFPLPAHGMP-----NPSVS 172
PP+ V P + PL + P GV + PY A LP P +P V+
Sbjct: 359 PPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVA 418
Query: 173 QIDAQPPGLSSVRTAAA-TSHSAIPGHQLVGTSGNTEAP---PSGTDKKEHVHD-VSSRI 227
I A P L+ + T + G + E+ P +KE + + + I
Sbjct: 419 -IAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPI 477
Query: 228 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTG 287
E L T + + E E+ E +K + P++ + G
Sbjct: 478 KEPSEEPLPMETEEEDPKEEPI--KEIKEEPKEEEMT----EEEKAAQKAKPVATAPIPG 531
Query: 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
T W +V T D + ++YN ++S W P ++
Sbjct: 532 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL 562
Score = 117 (46.2 bits), Expect = 2.9e-21, Sum P(4) = 2.9e-21
Identities = 40/167 (23%), Positives = 69/167 (41%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 732 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTR 791
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKD-RELLLNERVLPLXX 579
F +LL + +D + + K K SDPR++A+D RE L + + +
Sbjct: 792 GEKIKSDFFELLS--NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK 849
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 626
+ ++ LRE+ +R + K+I R+ ++K
Sbjct: 850 NLDSEKEKELERQ-ARIEASLREREREVQKARSEQTKEIDREREQHK 895
Score = 114 (45.2 bits), Expect = 9.3e-39, Sum P(4) = 9.3e-39
Identities = 45/147 (30%), Positives = 60/147 (40%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
P+ PP V +GP PP M RP PF P P P P G P + PPG
Sbjct: 32 PAPPPNAVM-RGP---PPLM--RPPPPFGMMRG--PPPPPRPPFGRPPFDPNMPPMPPPG 83
Query: 181 LSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTA 240
+ H P + ++ PP G + V++ ++ + W
Sbjct: 84 --GIPPPMGPPHLQRP--PFMPPPMSSMPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVE 139
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFK 267
+KT G VYYYNA T ES + KP G K
Sbjct: 140 NKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 114 (45.2 bits), Expect = 2.1e-14, Sum P(4) = 2.1e-14
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 528 FKQLLEEV--SEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLXXXXXX 583
FK LL ++ S D+ S +T +K +W S L+R+++E L NE + L
Sbjct: 903 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESG---SLLEREEKEKLFNEHIEALTKKKR- 958
Query: 584 XXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVI--FNEYV 641
F+ +L E ITL+S W +VK I+++DPR DR+ F EY+
Sbjct: 959 ----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYI 1008
Score = 96 (38.9 bits), Expect = 3.9e-19, Sum P(4) = 3.9e-19
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 427 DKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIK-FKEMLKERGVAPFSKWEKELPKIVF 485
+K+KD T+ E I F E+L + S+W K K+
Sbjct: 764 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 823
Query: 486 DPRFKAIQSQSARRALFERYVK 507
DPR+KA+ S S R LF++Y++
Sbjct: 824 DPRYKAVDSSSMREDLFKQYIE 845
Score = 95 (38.5 bits), Expect = 6.7e-07, Sum P(4) = 6.7e-07
Identities = 33/146 (22%), Positives = 68/146 (46%)
Query: 694 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYER 753
+A F+ ++ E +P+A+++E K KD + +A DRE LF E + ++
Sbjct: 727 QAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK---MKDREALFNEFVAAARKK 783
Query: 754 CAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE-REALWRR 812
D + E I ++ + + WS K ++ +PRY + RE L+++
Sbjct: 784 EKEDSK-TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQ 842
Query: 813 HAEEIQRKHKSSLDQNEDNHKDSKSR 838
+ E+I + +LD ++ + ++R
Sbjct: 843 YIEKIAK----NLDSEKEKELERQAR 864
Score = 90 (36.7 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 789 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 845
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE 776
+ + + L EA+ +E E
Sbjct: 846 KIAKNLDSEKEKELERQARIEASLRERE 873
Score = 78 (32.5 bits), Expect = 4.8e-35, Sum P(4) = 4.8e-35
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 258 STYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
S+ P G P PV T W T DGK YYYN++ + S+W P
Sbjct: 105 SSMPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDG 164
Query: 318 V 318
V
Sbjct: 165 V 165
Score = 77 (32.2 bits), Expect = 2.0e-30, Sum P(4) = 2.0e-30
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 699 FQALLVETIKDPQAS-WTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCA 755
F+ LL ET S W E + +++DP R SSDR+K F E+I+ Y
Sbjct: 961 FRQLLDETSAITLTSTWKEVKKIIKEDP--RCIK--FSSSDRKKQREFEEYIRDKYITAK 1016
Query: 756 HDFRGLLAEV--ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMP--RKEREALWR 811
DFR LL E IT + E + + + +++L+ + RY + +ER L
Sbjct: 1017 ADFRTLLKETKFITYRSKKLIQESDQHLKD----VEKILQNDKRYLVLDCVPEERRKLIV 1072
Query: 812 RHAEEIQRK 820
+ +++ R+
Sbjct: 1073 AYVDDLDRR 1081
Score = 76 (31.8 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 31/93 (33%), Positives = 37/93 (39%)
Query: 118 PTYPSLPPIGVSPQGPLL--RPPQMGVRPWLPFLPYPAAYPSPF-PLPAHGMPNPSVSQI 174
P P PP G P P + PP G+ P P P P PF P P MP P
Sbjct: 59 PPPPPRPPFGRPPFDPNMPPMPPPGGIPP--PMGP-PHLQRPPFMPPPMSSMPPPPGMMF 115
Query: 175 DAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNT 207
PPG+ V TA T A+P + + T
Sbjct: 116 ---PPGMPPV-TAPGTP--ALPPTEEIWVENKT 142
Score = 76 (31.8 bits), Expect = 2.5e-30, Sum P(4) = 2.5e-30
Identities = 27/140 (19%), Positives = 60/140 (42%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREK-LFREHIKTL 750
R++ + + + + + E + ++E + R S++ K + RE +
Sbjct: 836 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 895
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKERE 807
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 896 REEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKE 943
Query: 808 ALWRRHAEEIQRKHKSSLDQ 827
L+ H E + +K + Q
Sbjct: 944 KLFNEHIEALTKKKREHFRQ 963
Score = 73 (30.8 bits), Expect = 5.6e-05, Sum P(3) = 5.6e-05
Identities = 30/122 (24%), Positives = 54/122 (44%)
Query: 716 ESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQET 775
E P K + R N D+DS ++E IK ER + E +
Sbjct: 619 EDEPVKAKKRK-RDDNKDIDS-EKEAAMEAEIKAARERAI-----VPLEARMKQFKDMLL 671
Query: 776 EDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRH----AEEIQRKHKSSLDQNEDN 831
E G + ++W + +PRY + KER+ ++ ++ AEE +R+ K+ + Q +++
Sbjct: 672 ERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERREKKNKIMQAKED 731
Query: 832 HK 833
K
Sbjct: 732 FK 733
Score = 71 (30.1 bits), Expect = 9.7e-35, Sum P(4) = 9.7e-35
Identities = 32/112 (28%), Positives = 43/112 (38%)
Query: 102 PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRP-PQMGVRPWLPFLPYPAAYPSPFP 160
P+ P N A+ P PP G+ +GP P P G P+ P +P P P P
Sbjct: 32 PAPPPN---AVMRGPPPLMRPPPPFGMM-RGPPPPPRPPFGRPPFDPNMP-PMPPPGGIP 86
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS 212
P M P + + PP +SS+ PG V G PP+
Sbjct: 87 PP---MGPPHLQRPPFMPPPMSSMPPPPGMMFP--PGMPPVTAPGTPALPPT 133
Score = 47 (21.6 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVPVQP 277
W T V++YN T S +++P G + DK+ +P
Sbjct: 534 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 575
Score = 45 (20.9 bits), Expect = 4.6e-32, Sum P(4) = 4.6e-32
Identities = 18/66 (27%), Positives = 23/66 (34%)
Query: 94 GLRPSVPT-PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
G P P P P G I + P + PP P + PP M P +P + P
Sbjct: 68 GRPPFDPNMPPMPPPGG--IPPPMGPPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPVTAP 125
Query: 153 AAYPSP 158
P
Sbjct: 126 GTPALP 131
Score = 43 (20.2 bits), Expect = 9.3e-39, Sum P(4) = 9.3e-39
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 309 VSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNIVIEKGSNAISLSSP--AVNTGGRDATAL 366
VS+ S Q+V + S+A+S+++P +V+T AT +
Sbjct: 270 VSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPV 329
Query: 367 RTSSMP 372
+T P
Sbjct: 330 QTVPQP 335
Score = 41 (19.5 bits), Expect = 1.2e-31, Sum P(4) = 1.2e-31
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 50 MPTIPSFSTPPGL--FVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPT 101
MP P PPG+ P T A P + ++ + +Y +A R S T
Sbjct: 107 MPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWT 160
Score = 39 (18.8 bits), Expect = 2.1e-13, Sum P(4) = 2.1e-13
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 601 REKGDITLSSRWSKVKDIL--RDDPRYKSVRHEDREVIFN 638
RE+ + L +R + KD+L R + + E +++F+
Sbjct: 652 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 691
>UNIPROTKB|F1MKU9 [details] [associations]
symbol:TCERG1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0001106 "RNA polymerase II transcription corepressor activity"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IEA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 CTD:10915 KO:K12824 OMA:MEEMNED
EMBL:DAAA02020555 IPI:IPI01001763 RefSeq:XP_002689326.1
RefSeq:XP_002704921.2 UniGene:Bt.109736 Ensembl:ENSBTAT00000061039
GeneID:540964 KEGG:bta:540964 NextBio:20878935 ArrayExpress:F1MKU9
Uniprot:F1MKU9
Length = 1062
Score = 278 (102.9 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 67/184 (36%), Positives = 93/184 (50%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 629 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 687
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 578
FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 688 KIMQAKEDFKKMMEEAK--FNPRVTFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 745
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 746 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 804
Query: 638 NEYV 641
+Y+
Sbjct: 805 KQYI 808
Score = 158 (60.7 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
+R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 859 KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEAL 917
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 918 TKKKREHFRQLLDETSAI-----------TLTSTWKEVKKIIKEDPRCIKFSSSDRKKQ- 965
Query: 811 RRHAEEIQRKH 821
R E I+ K+
Sbjct: 966 REFEEYIRDKY 976
Score = 117 (46.2 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 46/147 (31%), Positives = 59/147 (40%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
P+ PP V +GP PP M RP PF P P P P G P + PPG
Sbjct: 32 PAPPPNAVM-RGP---PPLM--RPPPPFGMMRG--PPPPPRPPFGRPPFDPNMPPMPPPG 83
Query: 181 LSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTA 240
+ H P + T PP G + V++ ++ + W
Sbjct: 84 --GIPPPMGPPHLQRP--PFMPPPMGTMPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVE 139
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFK 267
+KT G VYYYNA T ES + KP G K
Sbjct: 140 NKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 117 (46.2 bits), Expect = 4.0e-39, Sum P(3) = 4.0e-39
Identities = 75/331 (22%), Positives = 121/331 (36%)
Query: 7 VEDAGLGSSTSTNSQPVQASVRXXXXXXXXXXXXXXXXXXXXWMPTIPSFSTPPGLFVTP 66
V+ +G+ST T S P A V T+ STP T
Sbjct: 215 VQAQAVGASTPTTSSPAPA-VSTSASSSTPSSTTSTTTTASSVSQTV---STP-----TT 265
Query: 67 QTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQI-YPT--YPSL 123
Q Q P +++ T T S ++ ++ +VP P P A+ H + P P+
Sbjct: 266 QDQTPSSAVSVATP-TVSVSTPAPTATPVQ-TVPQPH-PQTLPPAVPHSVPQPAAAIPAF 322
Query: 124 PPIGVSP-QGPL--LRPPQMGVRPW-LPFLPY--PAAYPSPFPLPAHGMP-----NPSVS 172
PP+ V P + PL + P GV + PY A LP P +P V+
Sbjct: 323 PPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVA 382
Query: 173 QIDAQPPGLSSVRTAAA-TSHSAIPGHQLVGTSGNTEAP---PSGTDKKEHVHD-VSSRI 227
I A P L+ + T + G + E+ P +KE + + + I
Sbjct: 383 -IAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPI 441
Query: 228 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTG 287
E L T + + E E+ E +K + P++ + G
Sbjct: 442 KEPSEEPLPMETEEEDPKEEPI--KEIKEEPKEEEMT----EEEKAAQKAKPVATTPIPG 495
Query: 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
T W +V T D + ++YN ++S W P ++
Sbjct: 496 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL 526
Score = 114 (45.2 bits), Expect = 2.5e-21, Sum P(4) = 2.5e-21
Identities = 40/167 (23%), Positives = 68/167 (40%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
FK+M++E P + + K D RFKAI+ R ALF +V
Sbjct: 696 FKKMMEEAKFNPRVTFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTR 755
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKD-RELLLNERVLPLXX 579
F +LL + +D + + K K SDPR++A+D RE L + + +
Sbjct: 756 GEKIKSDFFELLS--NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK 813
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 626
+ ++ LRE+ +R + K+I R+ ++K
Sbjct: 814 NLDSEKEKELERQ-ARIEASLREREREVQKARSEQTKEIDREREQHK 859
Score = 114 (45.2 bits), Expect = 8.7e-15, Sum P(4) = 8.7e-15
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 528 FKQLLEEV--SEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLXXXXXX 583
FK LL ++ S D+ S +T +K +W S L+R+++E L NE + L
Sbjct: 867 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESG---SLLEREEKEKLFNEHIEALTKKKR- 922
Query: 584 XXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVI--FNEYV 641
F+ +L E ITL+S W +VK I+++DPR DR+ F EY+
Sbjct: 923 ----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYI 972
Score = 96 (38.9 bits), Expect = 1.7e-19, Sum P(4) = 1.7e-19
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 427 DKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIK-FKEMLKERGVAPFSKWEKELPKIVF 485
+K+KD T+ E I F E+L + S+W K K+
Sbjct: 728 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 787
Query: 486 DPRFKAIQSQSARRALFERYVK 507
DPR+KA+ S S R LF++Y++
Sbjct: 788 DPRYKAVDSSSMREDLFKQYIE 809
Score = 91 (37.1 bits), Expect = 7.0e-07, Sum P(4) = 7.0e-07
Identities = 32/146 (21%), Positives = 67/146 (45%)
Query: 694 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYER 753
+A F+ ++ E +P+ +++E K KD + +A DRE LF E + ++
Sbjct: 691 QAKEDFKKMMEEAKFNPRVTFSEFAAKHAKDSRFKAIEK---MKDREALFNEFVAAARKK 747
Query: 754 CAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE-REALWRR 812
D + E I ++ + + WS K ++ +PRY + RE L+++
Sbjct: 748 EKEDSK-TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQ 806
Query: 813 HAEEIQRKHKSSLDQNEDNHKDSKSR 838
+ E+I + +LD ++ + ++R
Sbjct: 807 YIEKIAK----NLDSEKEKELERQAR 828
Score = 90 (36.7 bits), Expect = 8.8e-07, Sum P(4) = 8.8e-07
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 753 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 809
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE 776
+ + + L EA+ +E E
Sbjct: 810 KIAKNLDSEKEKELERQARIEASLRERE 837
Score = 78 (32.5 bits), Expect = 3.9e-35, Sum P(4) = 3.9e-35
Identities = 20/60 (33%), Positives = 24/60 (40%)
Query: 259 TYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
T P G P PV T W T DGK YYYN++ + S+W P V
Sbjct: 106 TMPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 165
Score = 77 (32.2 bits), Expect = 8.1e-31, Sum P(4) = 8.1e-31
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 699 FQALLVETIKDPQAS-WTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCA 755
F+ LL ET S W E + +++DP R SSDR+K F E+I+ Y
Sbjct: 925 FRQLLDETSAITLTSTWKEVKKIIKEDP--RCIK--FSSSDRKKQREFEEYIRDKYITAK 980
Query: 756 HDFRGLLAEV--ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMP--RKEREALWR 811
DFR LL E IT + E + + + +++L+ + RY + +ER L
Sbjct: 981 ADFRTLLKETKFITYRSKKLIQESDQHLKD----VEKILQNDKRYLVLDCVPEERRKLIV 1036
Query: 812 RHAEEIQRK 820
+ +++ R+
Sbjct: 1037 AYVDDLDRR 1045
Score = 76 (31.8 bits), Expect = 1.0e-30, Sum P(4) = 1.0e-30
Identities = 27/140 (19%), Positives = 60/140 (42%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREK-LFREHIKTL 750
R++ + + + + + E + ++E + R S++ K + RE +
Sbjct: 800 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 859
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKERE 807
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 860 REEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKE 907
Query: 808 ALWRRHAEEIQRKHKSSLDQ 827
L+ H E + +K + Q
Sbjct: 908 KLFNEHIEALTKKKREHFRQ 927
Score = 74 (31.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 33/137 (24%), Positives = 59/137 (43%)
Query: 704 VETIKDPQA---SWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 760
+ IK+ Q E P K + R N D+DS ++E IK ER
Sbjct: 568 MSAIKEEQELMEEMNEDEPVKAKKRK-RDDNKDIDS-EKEAAMEAEIKAARERAI----- 620
Query: 761 LLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRH----AEE 816
+ E + E G + ++W + +PRY + KER+ ++ ++ AEE
Sbjct: 621 VPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEE 680
Query: 817 IQRKHKSSLDQNEDNHK 833
+R+ K+ + Q +++ K
Sbjct: 681 ERREKKNKIMQAKEDFK 697
Score = 73 (30.8 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 31/93 (33%), Positives = 37/93 (39%)
Query: 118 PTYPSLPPIGVSPQGPLL--RPPQMGVRPWLPFLPYPAAYPSPF-PLPAHGMPNPSVSQI 174
P P PP G P P + PP G+ P P P P PF P P MP P
Sbjct: 59 PPPPPRPPFGRPPFDPNMPPMPPPGGIPP--PMGP-PHLQRPPFMPPPMGTMPPPPGMMF 115
Query: 175 DAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNT 207
PPG+ V TA T A+P + + T
Sbjct: 116 ---PPGMPPV-TAPGTP--ALPPTEEIWVENKT 142
Score = 64 (27.6 bits), Expect = 4.2e-34, Sum P(4) = 4.2e-34
Identities = 30/112 (26%), Positives = 42/112 (37%)
Query: 102 PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRP-PQMGVRPWLPFLPYPAAYPSPFP 160
P+ P N A+ P PP G+ +GP P P G P+ P +P P P P
Sbjct: 32 PAPPPN---AVMRGPPPLMRPPPPFGMM-RGPPPPPRPPFGRPPFDPNMP-PMPPPGGIP 86
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS 212
P M P + + PP + ++ PG V G PP+
Sbjct: 87 PP---MGPPHLQRPPFMPPPMGTMPPPPGMMFP--PGMPPVTAPGTPALPPT 133
Score = 57 (25.1 bits), Expect = 0.00092, Sum P(3) = 0.00092
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVF-DPR-FKAIQSQSARRALFERYVK 507
F+++L E + KE+ KI+ DPR K S ++ FE Y++
Sbjct: 925 FRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYIR 973
Score = 51 (23.0 bits), Expect = 9.1e-33, Sum P(4) = 9.1e-33
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 94 GLRPSVPT-PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
G P P P P G I + P + PP P G + PP M P +P + P
Sbjct: 68 GRPPFDPNMPPMPPPGG--IPPPMGPPHLQRPPFMPPPMGTMPPPPGMMFPPGMPPVTAP 125
Query: 153 AAYPSP 158
P
Sbjct: 126 GTPALP 131
Score = 47 (21.6 bits), Expect = 5.0e-35, Sum P(4) = 5.0e-35
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVPVQP 277
W T V++YN T S +++P G + DK+ +P
Sbjct: 498 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 539
Score = 43 (20.2 bits), Expect = 3.7e-39, Sum P(4) = 3.7e-39
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 309 VSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNIVIEKGSNAISLSSP--AVNTGGRDATAL 366
VS+ S Q+V + S+A+S+++P +V+T AT +
Sbjct: 234 VSTSASSSTPSSTTSTTTTASSVSQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPV 293
Query: 367 RTSSMP 372
+T P
Sbjct: 294 QTVPQP 299
Score = 41 (19.5 bits), Expect = 9.6e-32, Sum P(4) = 9.6e-32
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 50 MPTIPSFSTPPGL--FVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPT 101
MP P PPG+ P T A P + ++ + +Y +A R S T
Sbjct: 107 MPPPPGMMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWT 160
Score = 39 (18.8 bits), Expect = 9.7e-39, Sum P(4) = 9.7e-39
Identities = 15/89 (16%), Positives = 34/89 (38%)
Query: 294 TTNDGKKYYYNSK---MKVSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNIV--IEKGSNA 348
T DG K S+ M + Q+ ++ Q+ + ++ + A
Sbjct: 160 TKPDGVKVIQQSELTPMLAAQAQVQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQVQAQA 219
Query: 349 ISLSSPAVNTGGRDATALRTSSMPGSSSA 377
+ S+P ++ + +SS P S+++
Sbjct: 220 VGASTPTTSSPAPAVSTSASSSTPSSTTS 248
Score = 39 (18.8 bits), Expect = 9.1e-14, Sum P(4) = 9.1e-14
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 601 REKGDITLSSRWSKVKDIL--RDDPRYKSVRHEDREVIFN 638
RE+ + L +R + KD+L R + + E +++F+
Sbjct: 616 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 655
Score = 38 (18.4 bits), Expect = 1.2e-38, Sum P(4) = 1.2e-38
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 350 SLSSPAVNTGGRDATALRTSSMPGSSSAL 378
S +PAV+T +T T+S ++S++
Sbjct: 228 SSPAPAVSTSASSSTPSSTTSTTTTASSV 256
>MGI|MGI:1926421 [details] [associations]
symbol:Tcerg1 "transcription elongation regulator 1 (CA150)"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISO] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0016363 "nuclear
matrix" evidence=ISS] [GO:0070064 "proline-rich region binding"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 MGI:MGI:1926421 GO:GO:0005634
GO:GO:0003700 GO:GO:0006351 GO:GO:0070064 GO:GO:0001106
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
PDB:2JUP PDB:2RLY PDB:2RM0 PDBsum:2JUP PDBsum:2RLY PDBsum:2RM0
eggNOG:COG5104 GeneTree:ENSGT00530000062987 CTD:10915
HOGENOM:HOG000008544 HOVERGEN:HBG062908 KO:K12824 OMA:MEEMNED
OrthoDB:EOG40CHGM EMBL:BC039185 EMBL:BC040284 EMBL:AB023485
EMBL:U40749 EMBL:AK082750 IPI:IPI00229485 IPI:IPI00471277
IPI:IPI00471279 PIR:S64716 RefSeq:NP_001034563.1 UniGene:Mm.270511
PDB:1E0L PDB:2YSI PDBsum:1E0L PDBsum:2YSI ProteinModelPortal:Q8CGF7
SMR:Q8CGF7 STRING:Q8CGF7 PhosphoSite:Q8CGF7 PaxDb:Q8CGF7
PRIDE:Q8CGF7 Ensembl:ENSMUST00000025375 Ensembl:ENSMUST00000173642
GeneID:56070 KEGG:mmu:56070 UCSC:uc008etw.1 InParanoid:Q8CGF7
EvolutionaryTrace:Q8CGF7 NextBio:311856 Bgee:Q8CGF7
CleanEx:MM_TCERG1 Genevestigator:Q8CGF7
GermOnline:ENSMUSG00000024498 Uniprot:Q8CGF7
Length = 1100
Score = 278 (102.9 bits), Expect = 9.5e-39, Sum P(3) = 9.5e-39
Identities = 67/184 (36%), Positives = 93/184 (50%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 667 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 725
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 578
FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 726 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 783
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 784 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 842
Query: 638 NEYV 641
+Y+
Sbjct: 843 KQYI 846
Score = 158 (60.7 bits), Expect = 9.5e-39, Sum P(3) = 9.5e-39
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
+R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 897 KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEAL 955
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 956 TKKKREHFRQLLDETSAI-----------TLTSTWKEVKKIIKEDPRCIKFSSSDRKKQ- 1003
Query: 811 RRHAEEIQRKH 821
R E I+ K+
Sbjct: 1004 REFEEYIRDKY 1014
Score = 117 (46.2 bits), Expect = 1.5e-20, Sum P(4) = 1.5e-20
Identities = 40/167 (23%), Positives = 69/167 (41%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 734 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTR 793
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKD-RELLLNERVLPLXX 579
F +LL + +D + + K K SDPR++A+D RE L + + +
Sbjct: 794 GEKIKSDFFELLS--NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK 851
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 626
+ ++ LRE+ +R + K+I R+ ++K
Sbjct: 852 NLDSEKEKELERQ-ARIEASLREREREVQKARSEQTKEIDREREQHK 897
Score = 114 (45.2 bits), Expect = 9.5e-39, Sum P(3) = 9.5e-39
Identities = 80/334 (23%), Positives = 122/334 (36%)
Query: 7 VEDAGLGSSTSTNSQPVQASVRXXXXXXXXXXXXXXXXXXXXWMPTIPSFSTPPGLFVTP 66
V+ +G+ T T S P A V T+ STP T
Sbjct: 253 VQAQAVGAPTPTTSSPAPA-VSTSTPTSTPSSTTATTTTATSVAQTV---STP-----TT 303
Query: 67 QTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQI-YPT--YPSL 123
Q Q P +++ T T S ++ ++ +VP P P A+ H + P P+
Sbjct: 304 QDQTPSSAVSVATP-TVSVSAPAPTATPVQ-TVPQPH-PQTLPPAVPHSVPQPAAAIPAF 360
Query: 124 PPIGVSP-QGPL--LRPPQMGVRPW-LPFLPY--PAAYPSPFPLPAHGMP-----NPSVS 172
PP+ V P + PL + P GV + PY A LP P +P V+
Sbjct: 361 PPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVA 420
Query: 173 QIDAQPPGLSSVRTAAA-TSHSAIPGHQLVGTSGNTEAP---PSGTDKKEHVHD-VSSRI 227
I A P L+ + T + G + E+ P +KE + + + I
Sbjct: 421 -IAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPI 479
Query: 228 GASVNEQLDAWTAH---KTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEH 284
+ E L T K + E T E+ A K +P V TPI
Sbjct: 480 KEASEEPLPMETEEEDPKEEPVKEIKEEPKEEEMTEEEKAAQKAKP----VATTPIP--- 532
Query: 285 LTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
GT W +V T D + ++YN ++S W P ++
Sbjct: 533 --GTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL 564
Score = 114 (45.2 bits), Expect = 1.1e-13, Sum P(4) = 1.1e-13
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 528 FKQLLEEV--SEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLXXXXXX 583
FK LL ++ S D+ S +T +K +W S L+R+++E L NE + L
Sbjct: 905 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESG---SLLEREEKEKLFNEHIEALTKKKR- 960
Query: 584 XXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVI--FNEYV 641
F+ +L E ITL+S W +VK I+++DPR DR+ F EY+
Sbjct: 961 ----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYI 1010
Score = 107 (42.7 bits), Expect = 5.0e-38, Sum P(4) = 5.0e-38
Identities = 44/147 (29%), Positives = 57/147 (38%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
P+ PP V +GP PP M RP PF P P P P G P + PPG
Sbjct: 32 PAPPPNAVM-RGP---PPLM--RPPPPFGMMRG--PPPPPRPPFGRPPFDPNMPPMPPPG 83
Query: 181 LSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTA 240
+ H P + PP G + ++ ++ + W
Sbjct: 84 --GIPPPMGPPHLQRP--PFMPPPMGAMPPPPGMMFPPGMPPGTAPGAPALPPTEEIWVE 139
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFK 267
+KT G VYYYNA T ES + KP G K
Sbjct: 140 NKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 96 (38.9 bits), Expect = 2.0e-18, Sum P(4) = 2.0e-18
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 427 DKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIK-FKEMLKERGVAPFSKWEKELPKIVF 485
+K+KD T+ E I F E+L + S+W K K+
Sbjct: 766 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 825
Query: 486 DPRFKAIQSQSARRALFERYVK 507
DPR+KA+ S S R LF++Y++
Sbjct: 826 DPRYKAVDSSSMREDLFKQYIE 847
Score = 95 (38.5 bits), Expect = 3.5e-06, Sum P(4) = 3.5e-06
Identities = 33/146 (22%), Positives = 68/146 (46%)
Query: 694 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYER 753
+A F+ ++ E +P+A+++E K KD + +A DRE LF E + ++
Sbjct: 729 QAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK---MKDREALFNEFVAAARKK 785
Query: 754 CAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE-REALWRR 812
D + E I ++ + + WS K ++ +PRY + RE L+++
Sbjct: 786 EKEDSK-TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQ 844
Query: 813 HAEEIQRKHKSSLDQNEDNHKDSKSR 838
+ E+I + +LD ++ + ++R
Sbjct: 845 YIEKIAK----NLDSEKEKELERQAR 866
Score = 90 (36.7 bits), Expect = 1.1e-05, Sum P(4) = 1.1e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 791 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 847
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE 776
+ + + L EA+ +E E
Sbjct: 848 KIAKNLDSEKEKELERQARIEASLRERE 875
Score = 77 (32.2 bits), Expect = 1.1e-29, Sum P(4) = 1.1e-29
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 699 FQALLVETIKDPQAS-WTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCA 755
F+ LL ET S W E + +++DP R SSDR+K F E+I+ Y
Sbjct: 963 FRQLLDETSAITLTSTWKEVKKIIKEDP--RCIK--FSSSDRKKQREFEEYIRDKYITAK 1018
Query: 756 HDFRGLLAEV--ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMP--RKEREALWR 811
DFR LL E IT + E + + + +++L+ + RY + +ER L
Sbjct: 1019 ADFRTLLKETKFITYRSKKLIQESDQHLKD----VEKILQNDKRYLVLDCVPEERRKLIV 1074
Query: 812 RHAEEIQRK 820
+ +++ R+
Sbjct: 1075 AYVDDLDRR 1083
Score = 76 (31.8 bits), Expect = 8.0e-38, Sum P(4) = 8.0e-38
Identities = 27/67 (40%), Positives = 32/67 (47%)
Query: 118 PTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP-AAYPSP----FPLPAHGMPNPSVS 172
P P +PP G P P + PP + RP PF+P P A P P FP P GMP +
Sbjct: 74 PNMPPMPPPGGIP--PPMGPPHLQ-RP--PFMPPPMGAMPPPPGMMFP-P--GMPPGTAP 125
Query: 173 QIDAQPP 179
A PP
Sbjct: 126 GAPALPP 132
Score = 76 (31.8 bits), Expect = 1.3e-29, Sum P(4) = 1.3e-29
Identities = 27/140 (19%), Positives = 60/140 (42%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREK-LFREHIKTL 750
R++ + + + + + E + ++E + R S++ K + RE +
Sbjct: 838 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 897
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKERE 807
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 898 REEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKE 945
Query: 808 ALWRRHAEEIQRKHKSSLDQ 827
L+ H E + +K + Q
Sbjct: 946 KLFNEHIEALTKKKREHFRQ 965
Score = 75 (31.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 32/137 (23%), Positives = 60/137 (43%)
Query: 704 VETIKDPQA---SWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 760
+ IK+ Q E P ++ + R N D+DS ++E IK ER
Sbjct: 606 MSAIKEEQELMEEMNEDEP-IKAKKRKRDDNKDIDS-EKEAAMEAEIKAARERAI----- 658
Query: 761 LLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRH----AEE 816
+ E + E G + ++W + +PRY + KER+ ++ ++ AEE
Sbjct: 659 VPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEE 718
Query: 817 IQRKHKSSLDQNEDNHK 833
+R+ K+ + Q +++ K
Sbjct: 719 ERREKKNKIMQAKEDFK 735
Score = 72 (30.4 bits), Expect = 8.0e-38, Sum P(4) = 8.0e-38
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
W T DGK YYYN++ + S+W P V
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGV 165
Score = 68 (29.0 bits), Expect = 5.3e-37, Sum P(4) = 5.3e-37
Identities = 24/67 (35%), Positives = 26/67 (38%)
Query: 118 PTYPSLPPIGVSPQGPLL--RPPQMGVRPWLPFLPYPAAYPSPF-PLPAHGMPNPSVSQI 174
P P PP G P P + PP G+ P P P P PF P P MP P
Sbjct: 59 PPPPPRPPFGRPPFDPNMPPMPPPGGIPP--PMGP-PHLQRPPFMPPPMGAMPPPPGMMF 115
Query: 175 D-AQPPG 180
PPG
Sbjct: 116 PPGMPPG 122
Score = 59 (25.8 bits), Expect = 4.5e-36, Sum P(4) = 4.5e-36
Identities = 24/82 (29%), Positives = 32/82 (39%)
Query: 102 PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRP-PQMGVRPW---LPFLPYPAAYPS 157
P+ P N A+ P PP G+ +GP P P G P+ +P +P P P
Sbjct: 32 PAPPPN---AVMRGPPPLMRPPPPFGMM-RGPPPPPRPPFGRPPFDPNMPPMPPPGGIPP 87
Query: 158 PFPLPAHGMPNPSVSQIDAQPP 179
P P P + A PP
Sbjct: 88 PMGPPHLQRPPFMPPPMGAMPP 109
Score = 51 (23.0 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 21/70 (30%), Positives = 25/70 (35%)
Query: 94 GLRPSVPT-PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
G P P P P G I + P + PP P G + PP M P +P P
Sbjct: 68 GRPPFDPNMPPMPPPGG--IPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMP----P 121
Query: 153 AAYPSPFPLP 162
P LP
Sbjct: 122 GTAPGAPALP 131
Score = 47 (21.6 bits), Expect = 3.0e-35, Sum P(4) = 3.0e-35
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVPVQP 277
W T V++YN T S +++P G + DK+ +P
Sbjct: 536 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 577
Score = 43 (20.2 bits), Expect = 5.0e-38, Sum P(4) = 5.0e-38
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 309 VSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRT 368
VS+ S Q+V + S+A+S+++P V+ TA
Sbjct: 272 VSTSTPTSTPSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPV 331
Query: 369 SSMP 372
++P
Sbjct: 332 QTVP 335
Score = 39 (18.8 bits), Expect = 1.1e-12, Sum P(4) = 1.1e-12
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 601 REKGDITLSSRWSKVKDIL--RDDPRYKSVRHEDREVIFN 638
RE+ + L +R + KD+L R + + E +++F+
Sbjct: 654 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 693
>RGD|1311748 [details] [associations]
symbol:Tcerg1 "transcription elongation regulator 1"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001103 "RNA polymerase II repressing transcription factor
binding" evidence=ISO] [GO:0001106 "RNA polymerase II transcription
corepressor activity" evidence=ISO] [GO:0070064 "proline-rich
region binding" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311748
GO:GO:0001106 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 CTD:10915 KO:K12824 OMA:MEEMNED
OrthoDB:EOG40CHGM IPI:IPI00367866 RefSeq:NP_001100860.2
Ensembl:ENSRNOT00000025467 GeneID:307474 KEGG:rno:307474
UCSC:RGD:1311748 ArrayExpress:D3ZTL0 Uniprot:D3ZTL0
Length = 1081
Score = 278 (102.9 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 67/184 (36%), Positives = 93/184 (50%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 648 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 706
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLX 578
FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 707 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 764
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 765 KKEKEDSKTRGEKIKSDFFELLSNH-HLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 823
Query: 638 NEYV 641
+Y+
Sbjct: 824 KQYI 827
Score = 158 (60.7 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 39/131 (29%), Positives = 70/131 (53%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
+R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 878 KREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEAL 936
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 937 TKKKREHFRQLLDETSAI-----------TLTSTWKEVKKIIKEDPRCIKFSSSDRKKQ- 984
Query: 811 RRHAEEIQRKH 821
R E I+ K+
Sbjct: 985 REFEEYIRDKY 995
Score = 117 (46.2 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 40/167 (23%), Positives = 69/167 (41%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 715 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEKEDSKTR 774
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKD-RELLLNERVLPLXX 579
F +LL + +D + + K K SDPR++A+D RE L + + +
Sbjct: 775 GEKIKSDFFELLS--NHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK 832
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 626
+ ++ LRE+ +R + K+I R+ ++K
Sbjct: 833 NLDSEKEKELERQ-ARIEASLREREREVQKARSEQTKEIDREREQHK 878
Score = 114 (45.2 bits), Expect = 9.8e-14, Sum P(4) = 9.8e-14
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 528 FKQLLEEV--SEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLXXXXXX 583
FK LL ++ S D+ S +T +K +W S L+R+++E L NE + L
Sbjct: 886 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESG---SLLEREEKEKLFNEHIEALTKKKR- 941
Query: 584 XXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVI--FNEYV 641
F+ +L E ITL+S W +VK I+++DPR DR+ F EY+
Sbjct: 942 ----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQREFEEYI 991
Score = 113 (44.8 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 74/331 (22%), Positives = 121/331 (36%)
Query: 7 VEDAGLGSSTSTNSQPVQASVRXXXXXXXXXXXXXXXXXXXXWMPTIPSFSTPPGLFVTP 66
V+ +G+ T T S P A V T+ STP T
Sbjct: 234 VQAQAVGAPTPTTSSPAPA-VSTSAPTSTPSSTTATTTTATSVAQTV---STP-----TT 284
Query: 67 QTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQI-YPT--YPSL 123
Q Q P +++ T T S ++ ++ +VP P P A+ H + P P+
Sbjct: 285 QDQTPSSAVSVATP-TVSVSAPAPTATPVQ-TVPQPH-PQTLPPAVPHSVPQPAAAIPAF 341
Query: 124 PPIGVSP-QGPL--LRPPQMGVRPW-LPFLPY--PAAYPSPFPLPAHGMP-----NPSVS 172
PP+ V P + PL + P GV + PY A LP P +P V+
Sbjct: 342 PPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGMAPPIVPMIHPQVA 401
Query: 173 QIDAQPPGLSSVRTAAA-TSHSAIPGHQLVGTSGNTEAP---PSGTDKKEHVHD-VSSRI 227
I A P L+ + T + G + E+ P +KE + + + I
Sbjct: 402 -IAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIKEPI 460
Query: 228 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTG 287
+ E L T + + E E+ E +K + P++ + G
Sbjct: 461 KEASEEPLPMETEEEDPKEEPI--KEIKEEPKEEEMT----EEEKAAQKAKPVATTPIPG 514
Query: 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
T W +V T D + ++YN ++S W P ++
Sbjct: 515 TPWCVVWTGDERVFFYNPTTRLSMWDRPDDL 545
Score = 107 (42.7 bits), Expect = 4.5e-38, Sum P(4) = 4.5e-38
Identities = 44/147 (29%), Positives = 57/147 (38%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
P+ PP V +GP PP M RP PF P P P P G P + PPG
Sbjct: 32 PAPPPNAVM-RGP---PPLM--RPPPPFGMMRG--PPPPPRPPFGRPPFDPNMPPMPPPG 83
Query: 181 LSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTA 240
+ H P + PP G + ++ ++ + W
Sbjct: 84 --GIPPPMGPPHLQRP--PFMPPPMGAMPPPPGMMFPPGMPPGTAPGAPALPPTEEIWVE 139
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFK 267
+KT G VYYYNA T ES + KP G K
Sbjct: 140 NKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 96 (38.9 bits), Expect = 1.9e-18, Sum P(4) = 1.9e-18
Identities = 24/82 (29%), Positives = 37/82 (45%)
Query: 427 DKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIK-FKEMLKERGVAPFSKWEKELPKIVF 485
+K+KD T+ E I F E+L + S+W K K+
Sbjct: 747 EKMKDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVES 806
Query: 486 DPRFKAIQSQSARRALFERYVK 507
DPR+KA+ S S R LF++Y++
Sbjct: 807 DPRYKAVDSSSMREDLFKQYIE 828
Score = 95 (38.5 bits), Expect = 3.3e-06, Sum P(4) = 3.3e-06
Identities = 33/146 (22%), Positives = 68/146 (46%)
Query: 694 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYER 753
+A F+ ++ E +P+A+++E K KD + +A DRE LF E + ++
Sbjct: 710 QAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEK---MKDREALFNEFVAAARKK 766
Query: 754 CAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE-REALWRR 812
D + E I ++ + + WS K ++ +PRY + RE L+++
Sbjct: 767 EKEDSK-TRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQ 825
Query: 813 HAEEIQRKHKSSLDQNEDNHKDSKSR 838
+ E+I + +LD ++ + ++R
Sbjct: 826 YIEKIAK----NLDSEKEKELERQAR 847
Score = 90 (36.7 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 772 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 828
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE 776
+ + + L EA+ +E E
Sbjct: 829 KIAKNLDSEKEKELERQARIEASLRERE 856
Score = 77 (32.2 bits), Expect = 9.5e-30, Sum P(4) = 9.5e-30
Identities = 36/129 (27%), Positives = 60/129 (46%)
Query: 699 FQALLVETIKDPQAS-WTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCA 755
F+ LL ET S W E + +++DP R SSDR+K F E+I+ Y
Sbjct: 944 FRQLLDETSAITLTSTWKEVKKIIKEDP--RCIK--FSSSDRKKQREFEEYIRDKYITAK 999
Query: 756 HDFRGLLAEV--ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMP--RKEREALWR 811
DFR LL E IT + E + + + +++L+ + RY + +ER L
Sbjct: 1000 ADFRTLLKETKFITYRSKKLIQESDQHLKD----VEKILQNDKRYLVLDCVPEERRKLIV 1055
Query: 812 RHAEEIQRK 820
+ +++ R+
Sbjct: 1056 AYVDDLDRR 1064
Score = 76 (31.8 bits), Expect = 7.2e-38, Sum P(4) = 7.2e-38
Identities = 27/67 (40%), Positives = 32/67 (47%)
Query: 118 PTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP-AAYPSP----FPLPAHGMPNPSVS 172
P P +PP G P P + PP + RP PF+P P A P P FP P GMP +
Sbjct: 74 PNMPPMPPPGGIP--PPMGPPHLQ-RP--PFMPPPMGAMPPPPGMMFP-P--GMPPGTAP 125
Query: 173 QIDAQPP 179
A PP
Sbjct: 126 GAPALPP 132
Score = 76 (31.8 bits), Expect = 1.2e-29, Sum P(4) = 1.2e-29
Identities = 27/140 (19%), Positives = 60/140 (42%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREK-LFREHIKTL 750
R++ + + + + + E + ++E + R S++ K + RE +
Sbjct: 819 REDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQTKEIDREREQHK 878
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKERE 807
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 879 REEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKE 926
Query: 808 ALWRRHAEEIQRKHKSSLDQ 827
L+ H E + +K + Q
Sbjct: 927 KLFNEHIEALTKKKREHFRQ 946
Score = 75 (31.5 bits), Expect = 0.00018, Sum P(3) = 0.00018
Identities = 32/137 (23%), Positives = 60/137 (43%)
Query: 704 VETIKDPQA---SWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 760
+ IK+ Q E P ++ + R N D+DS ++E IK ER
Sbjct: 587 MSAIKEEQELMEEMNEDEP-IKAKKRKRDDNKDIDS-EKEAAMEAEIKAARERAI----- 639
Query: 761 LLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRH----AEE 816
+ E + E G + ++W + +PRY + KER+ ++ ++ AEE
Sbjct: 640 VPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEE 699
Query: 817 IQRKHKSSLDQNEDNHK 833
+R+ K+ + Q +++ K
Sbjct: 700 ERREKKNKIMQAKEDFK 716
Score = 72 (30.4 bits), Expect = 7.2e-38, Sum P(4) = 7.2e-38
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
W T DGK YYYN++ + S+W P V
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGV 165
Score = 68 (29.0 bits), Expect = 4.8e-37, Sum P(4) = 4.8e-37
Identities = 24/67 (35%), Positives = 26/67 (38%)
Query: 118 PTYPSLPPIGVSPQGPLL--RPPQMGVRPWLPFLPYPAAYPSPF-PLPAHGMPNPSVSQI 174
P P PP G P P + PP G+ P P P P PF P P MP P
Sbjct: 59 PPPPPRPPFGRPPFDPNMPPMPPPGGIPP--PMGP-PHLQRPPFMPPPMGAMPPPPGMMF 115
Query: 175 D-AQPPG 180
PPG
Sbjct: 116 PPGMPPG 122
Score = 59 (25.8 bits), Expect = 4.1e-36, Sum P(4) = 4.1e-36
Identities = 24/82 (29%), Positives = 32/82 (39%)
Query: 102 PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRP-PQMGVRPW---LPFLPYPAAYPS 157
P+ P N A+ P PP G+ +GP P P G P+ +P +P P P
Sbjct: 32 PAPPPN---AVMRGPPPLMRPPPPFGMM-RGPPPPPRPPFGRPPFDPNMPPMPPPGGIPP 87
Query: 158 PFPLPAHGMPNPSVSQIDAQPP 179
P P P + A PP
Sbjct: 88 PMGPPHLQRPPFMPPPMGAMPP 109
Score = 51 (23.0 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 21/70 (30%), Positives = 25/70 (35%)
Query: 94 GLRPSVPT-PSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYP 152
G P P P P G I + P + PP P G + PP M P +P P
Sbjct: 68 GRPPFDPNMPPMPPPGG--IPPPMGPPHLQRPPFMPPPMGAMPPPPGMMFPPGMP----P 121
Query: 153 AAYPSPFPLP 162
P LP
Sbjct: 122 GTAPGAPALP 131
Score = 47 (21.6 bits), Expect = 2.7e-35, Sum P(4) = 2.7e-35
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVPVQP 277
W T V++YN T S +++P G + DK+ +P
Sbjct: 517 WCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRADVDKIIQEP 558
Score = 43 (20.2 bits), Expect = 4.5e-38, Sum P(4) = 4.5e-38
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 309 VSSWQIPSEVXXXXXXXXXXXXXXQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRT 368
VS+ S Q+V + S+A+S+++P V+ TA
Sbjct: 253 VSTSAPTSTPSSTTATTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSAPAPTATPV 312
Query: 369 SSMP 372
++P
Sbjct: 313 QTVP 316
Score = 39 (18.8 bits), Expect = 9.8e-13, Sum P(4) = 9.8e-13
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 601 REKGDITLSSRWSKVKDIL--RDDPRYKSVRHEDREVIFN 638
RE+ + L +R + KD+L R + + E +++F+
Sbjct: 635 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFD 674
>WB|WBGene00022855 [details] [associations]
symbol:tcer-1 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016246 GO:GO:0010171 GO:GO:0040011
GO:GO:0042127 GO:GO:0040035 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0040020 EMBL:FO081697 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 HSSP:Q61051
GeneTree:ENSGT00530000062987 KO:K12824 UniGene:Cel.18223
GeneID:174150 KEGG:cel:CELE_ZK1127.9 UCSC:ZK1127.9a CTD:174150
NextBio:882743 HOGENOM:HOG000019394 RefSeq:NP_495443.1
ProteinModelPortal:Q95PX7 SMR:Q95PX7 IntAct:Q95PX7 STRING:Q95PX7
PRIDE:Q95PX7 EnsemblMetazoa:ZK1127.9a WormBase:ZK1127.9a
InParanoid:Q95PX7 OMA:LWVETET ArrayExpress:Q95PX7 Uniprot:Q95PX7
Length = 914
Score = 241 (89.9 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 60/189 (31%), Positives = 99/189 (52%)
Query: 455 EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXX 514
EE + +FKEML+E+ V+ S +EKEL KIVFD R+ ++ + + RRA F+ + +
Sbjct: 472 EERLKQFKEMLEEKNVSTSSTFEKELSKIVFDKRYLSLGA-TERRACFDAFCREKIESEK 530
Query: 515 XXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNER 573
F++LL E +++ + Y +F K+G DPR++A++R +DRE N+
Sbjct: 531 AERRKRVKEAKEEFQKLLAEC--ELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDF 588
Query: 574 VLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED- 632
V L ++F +L E+ +T S+WS K L D+ RY ++
Sbjct: 589 VGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSST 648
Query: 633 REVIFNEYV 641
RE +F E+V
Sbjct: 649 RESLFREFV 657
Score = 143 (55.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 39/144 (27%), Positives = 69/144 (47%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
R KEA FQ LL E + ++S++ K KDP+ +A + DRE F + + L
Sbjct: 536 RVKEAKEEFQKLLAECELNGRSSYSSFTSKFGKDPRYKAVERN---RDREDAFNDFVGEL 592
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE-REAL 809
+++ + R ++ A E + G T + WST K+ L+ E RY + RE+L
Sbjct: 593 HKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSSTRESL 652
Query: 810 WRRHAEEIQRKHKSSLDQNEDNHK 833
+R + + S +++ ++ K
Sbjct: 653 FREFVANLGDETASDIEEEQEREK 676
Score = 116 (45.9 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 44/152 (28%), Positives = 72/152 (47%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNAD-LDSSDREKLFREHI 747
K + E +++ LL++ IK + SW E+R L KD R N D LD + +E LF +HI
Sbjct: 708 KQKMGEHEDTYRNLLIDLIKSTENSWHEARRILRKDE--RYANCDMLDKTRKESLFDDHI 765
Query: 748 KTLYERCAHDFRGLLA--EVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE 805
K+L + F +L E IT ++ + K + + T ++ R K+ R
Sbjct: 766 KSLERKRREAFFQVLDNHEKITPMMRWRDAK--KIIQDEEETFVKIASNSER--KVERDF 821
Query: 806 REALWRRHAEEIQRKHKSSLDQNED-NHKDSK 836
R+ RRH + + + K L + + HK K
Sbjct: 822 RDWQERRH-DHLTDEFKEMLSETKIITHKSKK 852
Score = 93 (37.8 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 264 AGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
A E K PIS ++GT W +V T D K ++YN K S W+ P +
Sbjct: 324 AAVNAEAAKKKDSTRPISSTPVSGTPWCVVWTGDDKVFFYNPSTKCSVWERPPD 377
Score = 84 (34.6 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPI 280
DAW G YY+N++T E+T+EKP + + P P+
Sbjct: 233 DAWNEFNAPDGRKYYFNSITQENTWEKPKALIDQENGGGASPEPV 277
Score = 84 (34.6 bits), Expect = 1.6e-27, Sum P(3) = 1.6e-27
Identities = 50/210 (23%), Positives = 75/210 (35%)
Query: 123 LPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLS 182
+PP GP + PP R P S F GMP P PP
Sbjct: 62 VPPAARGRGGPGMAPPGFAGRGRGFATP---GMSSGFAPRGRGMP-PGRGGY--MPPYRG 115
Query: 183 SVRTAAATSHSAIPGHQLVGTSG-NTEAP-PSGTDKKEHVHDVSSRIGASVNEQLDAWTA 240
A A G G +AP P+ D+++ + +S G ++L W
Sbjct: 116 GYGVAPNGGPGAYGGPYNGGPGAYGAQAPGPNPQDQEQRLKRLS---GCEEGQEL--WVE 170
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFK--------------GEPDKVPVQPTPISMEHLT 286
+T G Y+Y+ V + +E+P K E +K + P
Sbjct: 171 TETAEGKKYFYHPVNRNTIWERPQNAKIVTQPELAQLIHRATEEEKNREERMPHGQIPQN 230
Query: 287 GTD-WALVTTNDGKKYYYNSKMKVSSWQIP 315
D W DG+KYY+NS + ++W+ P
Sbjct: 231 PDDAWNEFNAPDGRKYYFNSITQENTWEKP 260
Score = 76 (31.8 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 31/137 (22%), Positives = 61/137 (44%)
Query: 688 LKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHI 747
L+ +R+EA FQ L P W +++ ++ + + A E+ FR+
Sbjct: 768 LERKRREAF--FQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIASNSERKVERDFRDWQ 825
Query: 748 KTLYERCAHDFRGLLAE--VIT--AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR 803
+ ++ +F+ +L+E +IT ++ +E E +L+ KR + R + M
Sbjct: 826 ERRHDHLTDEFKEMLSETKIITHKSKKLMEEGEQHMDILSVLENDKRWV----RMTAMSA 881
Query: 804 KEREALWRRHAEEIQRK 820
ER+ + H E + RK
Sbjct: 882 SERDRMLEDHIENLGRK 898
Score = 49 (22.3 bits), Expect = 6.6e-24, Sum P(3) = 6.6e-24
Identities = 32/131 (24%), Positives = 53/131 (40%)
Query: 157 SPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDK 216
SP P+ + + +Q AQ L++ TS + G L + A + +
Sbjct: 273 SPEPVQSAAIAE---AQAKAQA-ALAAFMAQQKTSSNGGGGMPLSKAQASGAAAAAAVNA 328
Query: 217 KEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKG--EPDKVP 274
+ S+R +S W T V++YN T S +E+P G + DK+
Sbjct: 329 EAAKKKDSTRPISSTPVSGTPWCVVWTGDDKVFFYNPSTKCSVWERPPDTYGREDVDKL- 387
Query: 275 VQ--PTPISME 283
VQ P+P + E
Sbjct: 388 VQNPPSPKAEE 398
Score = 47 (21.6 bits), Expect = 0.00092, Sum P(3) = 0.00092
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 595 SFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDR---EVIFNEYV 641
+++++L + T +S W + + ILR D RY + D+ E +F++++
Sbjct: 717 TYRNLLIDLIKSTENS-WHEARRILRKDERYANCDMLDKTRKESLFDDHI 765
>UNIPROTKB|F1NQH4 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0007010 "cytoskeleton organization"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0016477 "cell
migration" evidence=IEA] [GO:0032465 "regulation of cytokinesis"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0007010 GO:GO:0016477
GO:GO:0008360 GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0032465 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 OMA:SHERPSQ
GeneTree:ENSGT00530000062987 EMBL:AADN02017035 EMBL:AADN02017036
IPI:IPI00822687 Ensembl:ENSGALT00000037747 ArrayExpress:F1NQH4
Uniprot:F1NQH4
Length = 1076
Score = 318 (117.0 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 134/590 (22%), Positives = 226/590 (38%)
Query: 70 APPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVS 129
A PG + ++S++G P P SA S S + H P P PP+G+
Sbjct: 146 AGPGAVRGGKMRSASSWGRCAPRRARAPVPPPRSALSVSLLLMGH---PGMPHYPPMGMH 202
Query: 130 PQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAA 189
P G RPP M P +P P P P P G P + Q P + S + AA
Sbjct: 203 PMGQ--RPPNM---PPVPHGMMPQMMP-PMGGPPMGQM-PGMMQ-SVMPGMMMSHMSQAA 254
Query: 190 TSHSAIPG-----HQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTD 244
+ PG QL T T+ + +S ++Q WT HK+
Sbjct: 255 MQPTVPPGVNSMDAQLGVTPPGTQTTHPVVCAAQQTATTNSSGSEEHSKQKSTWTEHKSP 314
Query: 245 TGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYN 304
G YYYN T +ST+EKP K TP + L+ W ++ GK YYYN
Sbjct: 315 DGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGKPYYYN 363
Query: 305 SKMKVSSWQIPSEVXXXXXXXXX---XXXXXQSVPNTNIVIEKGSNAISLSSPA-VNTGG 360
S+ K S W P E+ +S T+ + + A + ++ A T G
Sbjct: 364 SQTKESRWAKPKELEDLEALIKAEENSTKTEESASATSAAADAANTAATATAAAEAATAG 423
Query: 361 RDATALRTSSMPGSSSALDLIKKKLQDXXXXXXXXXXXXXXXXXXESNGSKAVEVTVKGL 420
+TA + + ++SA+ ++ + E + A
Sbjct: 424 TASTAAASDAETTAASAV--VENESAAAATAEDQGQQATSAPAAQEQSAESAANAA---- 477
Query: 421 QNENTKDKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIKFKEMLKERGVAPFSKWEKEL 480
+++ +D D + TKEE FKE+LKE+ V + WE+ +
Sbjct: 478 -DDSKQDGSADASKKEGDDAQPVKKTYTWN--TKEEAKQAFKELLKEKRVPSNASWEQAM 534
Query: 481 PKIVFDPRFK---AIQSQSARRALFERYVKTXXXXXXXXXXXXXXXXXXGFKQLLEEVSE 537
I+ DPR++ A+ S ++ F Y F++ LE E
Sbjct: 535 KMIINDPRYRIRSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLEN-HE 593
Query: 538 DIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLXXXXXXXXXXXXXXXXSSFK 597
+ +T Y+ ++ +G + A+ +DR + + + L + K
Sbjct: 594 KMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALK 653
Query: 598 SMLREKGDITLSSRWSKVKDILRDDPRY---KSVRHEDRE---VIFNEYV 641
++L ++T + WS+ + L D+P + + +++ D+E + F E++
Sbjct: 654 NILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHI 703
Score = 74 (31.1 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 36/172 (20%), Positives = 72/172 (41%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKE+ +F+++L + + A W + R + K+P + S+R+++F++
Sbjct: 860 KMKRKES--AFKSMLKQATPPIELDAVWEDIRDRFVKEPAFEDITLE---SERKRIFKDF 914
Query: 747 IKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE- 805
+ L C H + + + + + S S ++ K R E
Sbjct: 915 MHVLEHECQHHHSK------NKKHSKKSKKHHRKRSRSRSGSESEDDDSHSKKKRQRSES 968
Query: 806 REALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR 857
R A R + E +R +K S + K K R +D P S R ++++
Sbjct: 969 RSASERSSSAESERSYKKS---KKHKKKSKKRRHKSDS--PESDIEREKDKK 1015
Score = 39 (18.8 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 35/174 (20%), Positives = 58/174 (33%)
Query: 686 VRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFRE 745
+ L+ RK F +L + + + K +K + R+ + S+ +
Sbjct: 901 ITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESEDDD---S 957
Query: 746 HIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEP---RYSKMP 802
H K +R + R +AE+ + K S + PE R
Sbjct: 958 HSKKKRQRS--ESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREKDKK 1015
Query: 803 RKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQER 856
+ERE+ R + + KHKS + KDS T G Q R
Sbjct: 1016 ERERESEKDRARQRSESKHKSPTKKRPG--KDS-GNWDTSGSELSEGELEKQRR 1066
>ZFIN|ZDB-GENE-030131-274 [details] [associations]
symbol:prpf40a "PRP40 pre-mRNA processing factor 40
homolog A (yeast)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 ZFIN:ZDB-GENE-030131-274
Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 OMA:WEKPLEL CTD:55660
HOVERGEN:HBG059634 GeneTree:ENSGT00530000062987
HOGENOM:HOG000231802 OrthoDB:EOG418BN6 EMBL:CR925815 EMBL:BC049307
IPI:IPI00503410 RefSeq:NP_938170.1 UniGene:Dr.76804 SMR:Q7ZUE4
STRING:Q7ZUE4 Ensembl:ENSDART00000081326 GeneID:321555
KEGG:dre:321555 InParanoid:Q7ZUE4 NextBio:20807424 Uniprot:Q7ZUE4
Length = 851
Score = 178 (67.7 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 60/197 (30%), Positives = 84/197 (42%)
Query: 124 PPIGVSPQGPLLRPPQMGVRPWLPFL-PYPAAYPSPFPLPAHGMPNPSVSQIDAQ-PPGL 181
PP G+ P P + P MG RP P L P P P +P G P P + Q+ A PP +
Sbjct: 4 PP-GIPPHFPPMGMPPMGQRP--PSLAPMPPGIMPPM-MPPMGAP-P-IGQMPAMMPPMM 57
Query: 182 SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAH 241
+ ++I G S A P+ SS ++ WT H
Sbjct: 58 PGMMMPPRLPAASIQPTGPPGVSPVEAAAPAAPGTTSTTSTESSP--DEQPKKKSVWTEH 115
Query: 242 KTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKY 301
K+ G +YYYN T +ST+EKP K +++ L+ W ++ GK Y
Sbjct: 116 KSLDGKIYYYNTETKQSTWEKPDELKSPAEQM-----------LSKCPWKEYKSDTGKPY 164
Query: 302 YYNSKMKVSSWQIPSEV 318
YYNS+ K S W P E+
Sbjct: 165 YYNSQTKESRWTKPKEL 181
Score = 168 (64.2 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 44/195 (22%), Positives = 87/195 (44%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXX 512
TKEE FKE+LKE+GV+ + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 286 TKEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPKLSEKKQAFNAYKVQTEKE 345
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNE 572
F++ LE E + +T Y+ ++ +G + + +DR + +
Sbjct: 346 EKEEARIKYKESKETFQRFLEN-HEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIYED 404
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVR 629
+ L + K++L ++T + WS+ + L D+P + + ++
Sbjct: 405 VLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAEDEELQ 464
Query: 630 HEDRE---VIFNEYV 641
+ D+E + F E++
Sbjct: 465 NMDKEDALICFEEHI 479
Score = 146 (56.5 bits), Expect = 3.9e-23, Sum P(3) = 3.9e-23
Identities = 52/163 (31%), Positives = 73/163 (44%)
Query: 121 PSLPPIGVSPQG---PLLRPPQMGVRP-WLPFLPYP--AAYPSPFP--LPAHGMPN--PS 170
P PP+G+ P G P L P G+ P +P + P P+ P +P MP P+
Sbjct: 9 PHFPPMGMPPMGQRPPSLAPMPPGIMPPMMPPMGAPPIGQMPAMMPPMMPGMMMPPRLPA 68
Query: 171 VSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGAS 230
S PPG+S V AA A PG ++ +TE+ P KK+ V
Sbjct: 69 ASIQPTGPPGVSPVEAAAP----AAPG---TTSTTSTESSPDEQPKKKSV---------- 111
Query: 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKV 273
WT HK+ G +YYYN T +ST+EKP K +++
Sbjct: 112 -------WTEHKSLDGKIYYYNTETKQSTWEKPDELKSPAEQM 147
Score = 130 (50.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 51/186 (27%), Positives = 77/186 (41%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPG 180
P +PP+G P G + P M + P +P + P P+ P G P P VS ++A P
Sbjct: 36 PMMPPMGAPPIGQM---PAM-MPPMMPGMMMPPRLPAASIQPT-G-P-PGVSPVEAAAPA 88
Query: 181 LSSVRTAAATSHSAIPGHQLVGTSGNTEAPP-SG------TDKKEHVHDVSSRIGASVNE 233
T + TS + P Q S TE G T+ K+ + + + +
Sbjct: 89 APG--TTSTTSTESSPDEQPKKKSVWTEHKSLDGKIYYYNTETKQSTWEKPDELKSPAEQ 146
Query: 234 QLDA--WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWA 291
L W +K+DTG YYYN+ T ES + KP + + + + GT A
Sbjct: 147 MLSKCPWKEYKSDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTADVVAPGTTPA 206
Query: 292 LVTTND 297
L N+
Sbjct: 207 LTAQNE 212
Score = 88 (36.0 bits), Expect = 1.7e-26, Sum P(3) = 1.7e-26
Identities = 34/174 (19%), Positives = 70/174 (40%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKEA +F+++L + +P+A+W R + K+P + S+R+++F++
Sbjct: 636 KMKRKEA--AFKSMLKQATPPLEPEATWEGVRERFLKEPAFEDITLE---SERKRIFKDF 690
Query: 747 IKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER 806
+ L C H ++ ++ ++ S K + SK P +
Sbjct: 691 MHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEEDEYHTKKKKRSTSKSPSEHS 750
Query: 807 EALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDG---GRPPSSSRRNQERR 857
+ + + +KHK + HK S + GR + N + R
Sbjct: 751 SSGESERSYKKSKKHKKK--GKKRRHKSGSPESEGERERKGREKDKDKENDKSR 802
Score = 77 (32.2 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 32/146 (21%), Positives = 62/146 (42%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK-TLY 751
+E + A + E D + TE P +E P D+ +R +L ++ K
Sbjct: 233 EEQPSHVPAQVAEVSSDVAVNSTEETPSVETQPSN-----DVSKEERPELVKKVYKWNTK 287
Query: 752 ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR-KEREALW 810
E F+ LL E + A SW A +++ +PRYS +P+ E++ +
Sbjct: 288 EEAKQAFKELLKEKGVSSNA------------SWEQAMKLIINDPRYSALPKLSEKKQAF 335
Query: 811 RRHAEEIQRKHKSSLDQNEDNHKDSK 836
+ + +++ K ++ +K+SK
Sbjct: 336 NAYKVQTEKEEK---EEARIKYKESK 358
Score = 62 (26.9 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 461 FKEMLKERG--VAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 506
FK MLK+ + P + WE + + +P F+ I +S R+ +F+ ++
Sbjct: 644 FKSMLKQATPPLEPEATWEGVRERFLKEPAFEDITLESERKRIFKDFM 691
Score = 56 (24.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 27/137 (19%), Positives = 57/137 (41%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH-IKTL 750
++EA +F+ LL E ASW ++ + DP+ A S++++ F + ++T
Sbjct: 287 KEEAKQAFKELLKEKGVSSNASWEQAMKLIINDPRYSALPK---LSEKKQAFNAYKVQTE 343
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALW 810
E + R E E + T + A+++ + +S +P ++R ++
Sbjct: 344 KEE-KEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGDQEVWSCVPERDRLEIY 402
Query: 811 RRHAEEIQRKHKSSLDQ 827
+ +K K Q
Sbjct: 403 EDVLFYLAKKEKEQAKQ 419
Score = 49 (22.3 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 711 QASWTESRPKLEKDPQGRATNADLDSSDREKL---FREHIKTL 750
+ +W+E++ L +P A + +L + D+E F EHI+ L
Sbjct: 441 RTTWSEAQQYLLDNPTF-AEDEELQNMDKEDALICFEEHIRAL 482
Score = 44 (20.5 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 780 TVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHK 833
T +WS A++ L P +++ +E + + + A +H +L++ E++ K
Sbjct: 439 TYRTTWSEAQQYLLDNPTFAE--DEELQNMDKEDALICFEEHIRALEKEEEDEK 490
Score = 42 (19.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 528 FKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFE 559
FK +L++ + ++ ++ ++++ +P FE
Sbjct: 644 FKSMLKQATPPLEPEATWEGVRERFLKEPAFE 675
>TAIR|locus:2194894 [details] [associations]
symbol:PRP40A "pre-mRNA-processing protein 40A"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0005886 "plasma membrane" evidence=ISM]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0008380 "RNA
splicing" evidence=IPI] [GO:0070063 "RNA polymerase binding"
evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AC007915 GO:GO:0016592 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
EMBL:AC020576 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
EMBL:AK316856 IPI:IPI00526992 IPI:IPI00548835 IPI:IPI00892236
IPI:IPI00900521 RefSeq:NP_001117438.1 RefSeq:NP_175113.2
UniGene:At.14888 UniGene:At.28268 HSSP:Q61051
ProteinModelPortal:B6EUA9 SMR:B6EUA9 PRIDE:B6EUA9
EnsemblPlants:AT1G44910.1 GeneID:841057 KEGG:ath:AT1G44910
TAIR:At1g44910 eggNOG:COG5104 OMA:WEKPLEL PhylomeDB:B6EUA9
ProtClustDB:CLSN2681520 Genevestigator:B6EUA9 Uniprot:B6EUA9
Length = 958
Score = 287 (106.1 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 126/579 (21%), Positives = 213/579 (36%)
Query: 89 FYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPP-IGVSPQG---PLLRP------- 137
F+ + P+V + P S Q Q++P P P I S Q P ++
Sbjct: 33 FHPYGHVPPNVQS-QPPQYSQPIQQQQLFPVRPGQPVHITSSSQAVSVPYIQTNKILTSG 91
Query: 138 ---PQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHS- 193
PQ P F + SP+ P + + QP V +++
Sbjct: 92 STQPQPNAPPMTGFATSGPPFSSPYTFVPSSYPQQQPTSL-VQPNSQMHVAGVPPAANTW 150
Query: 194 AIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNA 253
+P +Q S + +P T ++ V VS+ G + W H + G YYYN
Sbjct: 151 PVPVNQ----STSLVSPVQQTGQQTPVA-VSTDPGNLTPQSASDWQEHTSADGRKYYYNK 205
Query: 254 VTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQ 313
T +S +EKP TP+ + T W TT +GKKYYYN K S W
Sbjct: 206 RTKQSNWEKPLELM----------TPLERADAS-TVWKEFTTPEGKKYYYNKVTKESKWT 254
Query: 314 IPSEVXXXXXXXXXXXXXXQ-----SVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRT 368
IP ++ S P ++ A+S + V + T +
Sbjct: 255 IPEDLKLAREQAQLASEKTSLSEAGSTPLSHHAASSSDLAVSTVTSVVPSTSSALTG-HS 313
Query: 369 SSMPGSSSALDLIKK-KLQDXXXXXXXXXXXXXXXXXXESNGSKAVEVTVKGLQNENTKD 427
SS + A+ + + + ++ S+ + + G +N +
Sbjct: 314 SSPIQAGLAVPVTRPPSVAPVTPTSGAISDTEATTIKGDNLSSRGADDSNDGATAQNNEA 373
Query: 428 KLKDINXXXXXXXXXXXXXXXXXXP----TKEECIIKFKEMLKERGVAPFSKWEKELPKI 483
+ K+++ P TK+E FK +L+ V WE+ L +I
Sbjct: 374 ENKEMSVNGKANLSPAGDKANVEEPMVYATKQEAKAAFKSLLESVNVHSDWTWEQTLKEI 433
Query: 484 VFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXXXXXXXXGFKQLLEEVSEDIDHST 543
V D R+ A+++ R+ F Y+ F ++LEE E++ S
Sbjct: 434 VHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRRRQKKAREEFVKMLEEC-EELSSSL 492
Query: 544 DYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLXXXXXXXXXXXXXXXXSSFKSMLRE 602
+ + +D RF+A+DR +DRE L + ++ L + ++ L
Sbjct: 493 KWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAAEEHRQYMADYRKFLET 552
Query: 603 KGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYV 641
I ++W K++D L DD R + DR + F EY+
Sbjct: 553 CDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYI 591
Score = 108 (43.1 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 60/232 (25%), Positives = 84/232 (36%)
Query: 91 SSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPP--QMGVRPWLPF 148
S RP VP +A Q +P Y +PP V Q P P Q + P P
Sbjct: 9 SGTQFRPMVPGQQGQHFVPAASQ-PFHP-YGHVPP-NVQSQPPQYSQPIQQQQLFPVRPG 65
Query: 149 LPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPG-HQLVGTSGNT 207
P S + N ++ QP + T ATS + V +S
Sbjct: 66 QPVHITSSSQAVSVPYIQTNKILTSGSTQPQPNAPPMTGFATSGPPFSSPYTFVPSSYPQ 125
Query: 208 EAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAH-KTDTGIVYYYNAVTGESTYEKPAGF 266
+ P S +H A V + W T +V TG+ T P
Sbjct: 126 QQPTSLVQPNSQMHV------AGVPPAANTWPVPVNQSTSLVSPVQQ-TGQQT---PVAV 175
Query: 267 KGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
+P + TP S +DW T+ DG+KYYYN + K S+W+ P E+
Sbjct: 176 STDPGNL----TPQS-----ASDWQEHTSADGRKYYYNKRTKQSNWEKPLEL 218
Score = 98 (39.6 bits), Expect = 7.7e-10, Sum P(3) = 7.7e-10
Identities = 39/180 (21%), Positives = 70/180 (38%)
Query: 460 KFKEMLKE-RGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXX 518
+F +ML+E ++ KW K + D RFKA+ R LF+ Y+
Sbjct: 477 EFVKMLEECEELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYIVELERKEREKAA 536
Query: 519 XXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLX 578
+++ LE + I T ++ + + D R L++ DR + E +L L
Sbjct: 537 EEHRQYMADYRKFLE-TCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLE 595
Query: 579 XXXXXXXXX-------XXXXXXSSFKSMLREK---GDITLSSRWSKVKDILRDDPRYKSV 628
+F+++L E G +T + W L+D P+Y++V
Sbjct: 596 KEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAV 655
Score = 85 (35.0 bits), Expect = 3.1e-25, Sum P(2) = 3.1e-25
Identities = 33/155 (21%), Positives = 63/155 (40%)
Query: 703 LVETIKD--PQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 760
L+ T K+ ++W +S+ +E+ + R+ D S + LF E+I +L E+ R
Sbjct: 756 LLHTFKEITVASNWEDSKQLVEESQEYRSIG---DESVSQGLFEEYITSLQEKAKEKERK 812
Query: 761 LLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRK 820
E + E E E K +R + E + R+E + A ++
Sbjct: 813 RDEEKVRKEKERDEKEKRKDKDKERREKEREREKEKGKERSKREESDG---ETAMDVSEG 869
Query: 821 HKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
HK + +D + + R + SS R +++
Sbjct: 870 HKDEKRKGKDRDRKHRRRHHNNSDEDVSSDRDDRD 904
Score = 71 (30.1 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 40/157 (25%), Positives = 61/157 (38%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL-Y 751
+E +TS Q E K+ + E + + EK+ + D D REK RE K
Sbjct: 796 EEYITSLQ----EKAKEKERKRDEEKVRKEKERDEKEKRKDKDKERREKE-REREKEKGK 850
Query: 752 ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYS-KMPRKEREALW 810
ER + + +E E GK E S + R E +
Sbjct: 851 ERSKREESDGETAMDVSEGHKDEKRKGKDRDRKHRRRHHNNSDEDVSSDRDDRDESKKSS 910
Query: 811 RRHAEEIQ--RKHKSSLD-QNEDNHKDSKSRSSTDGG 844
R+H + + RKH +S + ++E+ HK K SS G
Sbjct: 911 RKHGNDRKKSRKHANSPESESENRHKRQKKESSRRSG 947
Score = 70 (29.7 bits), Expect = 1.9e-26, Sum P(3) = 1.9e-26
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 596 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 641
F ++L +IT++S W K ++ + Y+S+ E + +F EY+
Sbjct: 753 FTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEYI 799
Score = 68 (29.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 29/134 (21%), Positives = 67/134 (50%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLY 751
++EA +F++LL E++ + + WT + L++ + A +R++ F E++
Sbjct: 404 KQEAKAAFKSLL-ESV-NVHSDWTWEQT-LKEIVHDKRYGALRTLGERKQAFNEYLGQRK 460
Query: 752 ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNS--WSTAKRVLKPEPRYSKMPR-KEREA 808
+ A + R + E + E+ + + +S WS A + + + R+ + R ++RE
Sbjct: 461 KVEAEERRRRQKKA--REEFVKMLEECEELSSSLKWSKAMSLFENDQRFKAVDRPRDRED 518
Query: 809 LWRRHAEEIQRKHK 822
L+ + E++RK +
Sbjct: 519 LFDNYIVELERKER 532
Score = 52 (23.4 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 776 EDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDS 835
E+ T L + K + E + K KER+ +R ++ +R+ K ++ ++ K+
Sbjct: 796 EEYITSLQEKAKEKERKRDEEKVRK--EKERDEKEKRKDKDKERREKER-EREKEKGKER 852
Query: 836 KSRSSTDG--GRPPSSSRRNQERR 857
R +DG S ++++R+
Sbjct: 853 SKREESDGETAMDVSEGHKDEKRK 876
Score = 52 (23.4 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 466 KERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 506
KE VA S WE + +++I +S + LFE Y+
Sbjct: 761 KEITVA--SNWEDSKQLVEESQEYRSIGDESVSQGLFEEYI 799
Score = 45 (20.9 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 733 DLDSSDRE--KLFREHIKTLYERCAHDFRGLLAEVITAEAAAQET 775
DL+ + E ++ +EH++ + FR LL E + A +T
Sbjct: 593 DLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKT 637
>MGI|MGI:1860512 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog
A (yeast)" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=ISO] [GO:0008360 "regulation
of cell shape" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=ISO;IDA]
[GO:0016477 "cell migration" evidence=ISO] [GO:0032465 "regulation
of cytokinesis" evidence=ISO] [GO:0070064 "proline-rich region
binding" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 MGI:MGI:1860512
GO:GO:0007010 GO:GO:0016477 GO:GO:0008380 GO:GO:0008360
GO:GO:0016607 GO:GO:0006397 GO:GO:0070064 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 eggNOG:COG5104 CTD:55660 HOVERGEN:HBG059634 EMBL:AF135439
EMBL:AK041205 EMBL:AK051375 EMBL:AK087963 EMBL:U40747
IPI:IPI00284213 IPI:IPI00338887 PIR:S64713 RefSeq:NP_061255.1
UniGene:Mm.257474 UniGene:Mm.392945 UniGene:Mm.393219
ProteinModelPortal:Q9R1C7 SMR:Q9R1C7 IntAct:Q9R1C7 STRING:Q9R1C7
PhosphoSite:Q9R1C7 PaxDb:Q9R1C7 PRIDE:Q9R1C7 DNASU:56194
Ensembl:ENSMUST00000076313 GeneID:56194 KEGG:mmu:56194
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 InParanoid:Q9R1C7
OMA:QETVADF OrthoDB:EOG418BN6 NextBio:312006 Bgee:Q9R1C7
Genevestigator:Q9R1C7 GermOnline:ENSMUSG00000061136 Uniprot:Q9R1C7
Length = 953
Score = 171 (65.3 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 63/199 (31%), Positives = 86/199 (43%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQP----PG 180
VS G L R P MG P + + P +P + P HGM + + P PG
Sbjct: 44 VSADGFLRRRPSMG-HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPG 102
Query: 181 L-SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWT 239
+ SSV + SH + Q A P G + DV++ GA+ + WT
Sbjct: 103 MMSSVMSGMMMSHMSQASMQ--------PALPPGVNSM----DVAA--GAASGAK-SMWT 147
Query: 240 AHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGK 299
HK+ G YYYN T +ST+EKP K TP + L+ W ++ GK
Sbjct: 148 EHKSPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGK 196
Query: 300 KYYYNSKMKVSSWQIPSEV 318
YYYNS+ K S W P E+
Sbjct: 197 PYYYNSQTKESRWAKPKEL 215
Score = 170 (64.9 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXX 512
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 388 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKE 447
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNE 572
F++ LE E + +T Y+ ++ +G + A+ +DR + +
Sbjct: 448 EKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED 506
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVR 629
+ L + K++L ++T S+ WS+ + L D+P + + ++
Sbjct: 507 VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQ 566
Query: 630 HEDRE---VIFNEYV 641
+ D+E + F E++
Sbjct: 567 NMDKEDALICFEEHI 581
Score = 83 (34.3 bits), Expect = 8.1e-13, Sum P(3) = 8.1e-13
Identities = 42/189 (22%), Positives = 75/189 (39%)
Query: 461 FKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRAL--FERYVKTXXXXXXXXX 517
F + L E G + S W + P I D RF + Q AL F+ YV+
Sbjct: 613 FLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEK 672
Query: 518 XXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN---ERV 574
K +L++ ++ +T ++ F S R LD + +L N E+
Sbjct: 673 KI--------IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKA 724
Query: 575 LPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSVRHE-D 632
S+FKSML++ I L + W +++ +P ++ + E +
Sbjct: 725 EAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESE 784
Query: 633 REVIFNEYV 641
R+ IF +++
Sbjct: 785 RKRIFKDFM 793
Score = 77 (32.2 bits), Expect = 1.3e-24, Sum P(3) = 1.3e-24
Identities = 38/185 (20%), Positives = 82/185 (44%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKE+ +F+++L + + A W + R + K+P + S+R+++F++
Sbjct: 738 KMKRKES--AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE---SERKRIFKDF 792
Query: 747 IKTLYERCAHDFRGLLAEVITAEAAAQE---TEDGKTVLNSWSTAKRVLKPEPRYSKMPR 803
+ L C H ++ ++ + G + S +K+ + +S R
Sbjct: 793 MHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESDDDDSHSKKKRQRSESHSASER 852
Query: 804 K---EREALWRR---HAEEIQ-RKHKS-SLDQNEDNHKDSKSR---SSTDGGRPPSSSRR 852
E E +++ H ++ + R+HKS S + + + KD K + S D R S S+
Sbjct: 853 SSSAESERSYKKSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRDSEKDRSRQRSESKH 912
Query: 853 NQERR 857
++
Sbjct: 913 KSPKK 917
Score = 60 (26.2 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDR---------EKL 742
++EA +F+ LL E ASW ++ + DP+ A A L + EK
Sbjct: 389 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL-AKLSEKKQAFNAYKVQTEKE 447
Query: 743 FREHIKTLYERCAHDFRGLLA--EVITAEAAAQETED--GKT-VLNSWSTAKRVLKPEPR 797
+E ++ Y+ F+ L E +T+ ++ E G+ V N+ S R+ E
Sbjct: 448 EKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDV 507
Query: 798 YSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDN 831
+ +KE+E A+++++++ +L DN
Sbjct: 508 LFFLSKKEKE-----QAKQLRKRNWEALKNILDN 536
Score = 50 (22.7 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 29/141 (20%), Positives = 57/141 (40%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 752
KEA SFQ L K S T + + + NA + DR +++ + + L +
Sbjct: 457 KEAKESFQRFLENHEK--MTSTTRYKKAEQMFGEMEVWNA-ISERDRLEIYEDVLFFLSK 513
Query: 753 RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRR 812
+ + L A + T +WS A++ L P +++ +E + + +
Sbjct: 514 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAE--DEELQNMDKE 571
Query: 813 HAEEIQRKHKSSLDQNEDNHK 833
A +H +L++ E+ K
Sbjct: 572 DALICFEEHIRALEKEEEEEK 592
Score = 49 (22.3 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 17/90 (18%), Positives = 36/90 (40%)
Query: 768 AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKS--SL 825
+ +A++ + ++ + + K K + R K E + + +E R + S
Sbjct: 846 SHSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRDSEKDRSR 905
Query: 826 DQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
++E HK K ++ D G +S E
Sbjct: 906 QRSESKHKSPKKKTGKDSGNWDTSGSELSE 935
Score = 42 (19.8 bits), Expect = 2.1e-11, Sum P(3) = 2.1e-11
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 66 PQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNS-GS 110
P T+ P + T+ + ++A ++A + T + P+N+ GS
Sbjct: 260 PTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGS 305
Score = 37 (18.1 bits), Expect = 5.4e-11, Sum P(3) = 5.4e-11
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 607 TLSSRWSKVKDILRDDPRYKS 627
T SRW+K K+ L D Y++
Sbjct: 204 TKESRWAKPKE-LEDLEGYQN 223
>RGD|1311401 [details] [associations]
symbol:Prpf40a "PRP40 pre-mRNA processing factor 40 homolog A
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0007010 "cytoskeleton organization"
evidence=IEA;ISO] [GO:0008360 "regulation of cell shape"
evidence=IEA;ISO] [GO:0016363 "nuclear matrix" evidence=IEA;ISO]
[GO:0016477 "cell migration" evidence=IEA;ISO] [GO:0032465
"regulation of cytokinesis" evidence=IEA;ISO] [GO:0070064
"proline-rich region binding" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 RGD:1311401
GO:GO:0007010 GO:GO:0016477 GO:GO:0008360 GO:GO:0016363
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987 OrthoDB:EOG418BN6
EMBL:CH473983 IPI:IPI00372759 RefSeq:NP_001099950.1
UniGene:Rn.95204 Ensembl:ENSRNOT00000006549 GeneID:295607
KEGG:rno:295607 UCSC:RGD:1311401 NextBio:639767 Uniprot:D3ZJ92
Length = 953
Score = 171 (65.3 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 63/199 (31%), Positives = 86/199 (43%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQP----PG 180
VS G L R P MG P + + P +P + P HGM + + P PG
Sbjct: 44 VSADGFLRRRPSMG-HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPG 102
Query: 181 L-SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWT 239
+ SSV + SH + Q A P G + DV++ GA+ + WT
Sbjct: 103 MMSSVMSGMMMSHMSQASMQ--------PALPPGVNSM----DVAA--GAASGAK-SMWT 147
Query: 240 AHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGK 299
HK+ G YYYN T +ST+EKP K TP + L+ W ++ GK
Sbjct: 148 EHKSPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGK 196
Query: 300 KYYYNSKMKVSSWQIPSEV 318
YYYNS+ K S W P E+
Sbjct: 197 PYYYNSQTKESRWAKPKEL 215
Score = 170 (64.9 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXX 512
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 388 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKE 447
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNE 572
F++ LE E + +T Y+ ++ +G + A+ +DR + +
Sbjct: 448 EKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED 506
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVR 629
+ L + K++L ++T S+ WS+ + L D+P + + ++
Sbjct: 507 VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQ 566
Query: 630 HEDRE---VIFNEYV 641
+ D+E + F E++
Sbjct: 567 NMDKEDALICFEEHI 581
Score = 83 (34.3 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
Identities = 42/189 (22%), Positives = 75/189 (39%)
Query: 461 FKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRAL--FERYVKTXXXXXXXXX 517
F + L E G + S W + P I D RF + Q AL F+ YV+
Sbjct: 613 FLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEK 672
Query: 518 XXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN---ERV 574
K +L++ ++ +T ++ F S R LD + +L N E+
Sbjct: 673 KI--------IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKA 724
Query: 575 LPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSVRHE-D 632
S+FKSML++ I L + W +++ +P ++ + E +
Sbjct: 725 EAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESE 784
Query: 633 REVIFNEYV 641
R+ IF +++
Sbjct: 785 RKRIFKDFM 793
Score = 74 (31.1 bits), Expect = 2.7e-24, Sum P(3) = 2.7e-24
Identities = 38/185 (20%), Positives = 78/185 (42%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKE+ +F+++L + + A W + R + K+P + S+R+++F++
Sbjct: 738 KMKRKES--AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE---SERKRIFKDF 792
Query: 747 IKTLYERCAHDF-----RGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPE---PRY 798
+ L C H ++ + + + +S S KR +
Sbjct: 793 MHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESHSASEH 852
Query: 799 SKMPRKERE-ALWRRHAEEIQ-RKHKS-SLDQNEDNHKDSKSR---SSTDGGRPPSSSRR 852
S ER ++H ++ + R+HKS S + + + KD K + S D R S S+
Sbjct: 853 SSSAESERSYKKSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRESEKDRSRQRSESKH 912
Query: 853 NQERR 857
++
Sbjct: 913 KSPKK 917
Score = 60 (26.2 bits), Expect = 2.8e-09, Sum P(3) = 2.8e-09
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDR---------EKL 742
++EA +F+ LL E ASW ++ + DP+ A A L + EK
Sbjct: 389 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL-AKLSEKKQAFNAYKVQTEKE 447
Query: 743 FREHIKTLYERCAHDFRGLLA--EVITAEAAAQETED--GKT-VLNSWSTAKRVLKPEPR 797
+E ++ Y+ F+ L E +T+ ++ E G+ V N+ S R+ E
Sbjct: 448 EKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDV 507
Query: 798 YSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDN 831
+ +KE+E A+++++++ +L DN
Sbjct: 508 LFFLSKKEKE-----QAKQLRKRNWEALKNILDN 536
Score = 51 (23.0 bits), Expect = 6.3e-22, Sum P(3) = 6.3e-22
Identities = 17/90 (18%), Positives = 37/90 (41%)
Query: 768 AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKS--SL 825
+ +A++ + ++ + + K K + R K E + + +E R+ + S
Sbjct: 846 SHSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDTEREKDKKEKDRESEKDRSR 905
Query: 826 DQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
++E HK K ++ D G +S E
Sbjct: 906 QRSESKHKSPKKKTGKDSGNWDTSGSELSE 935
Score = 50 (22.7 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 29/141 (20%), Positives = 57/141 (40%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 752
KEA SFQ L K S T + + + NA + DR +++ + + L +
Sbjct: 457 KEAKESFQRFLENHEK--MTSTTRYKKAEQMFGEMEVWNA-ISERDRLEIYEDVLFFLSK 513
Query: 753 RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRR 812
+ + L A + T +WS A++ L P +++ +E + + +
Sbjct: 514 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAE--DEELQNMDKE 571
Query: 813 HAEEIQRKHKSSLDQNEDNHK 833
A +H +L++ E+ K
Sbjct: 572 DALICFEEHIRALEKEEEEEK 592
Score = 42 (19.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 66 PQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNS-GS 110
P T+ P + T+ + ++A ++A + T + P+N+ GS
Sbjct: 260 PTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTNTVGS 305
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 607 TLSSRWSKVKDILRDDPRYKS 627
T SRW+K K+ L D Y++
Sbjct: 204 TKESRWAKPKE-LEDLEGYQN 223
>UNIPROTKB|F1RQH2 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 CTD:55660 GeneTree:ENSGT00530000062987
OMA:QETVADF EMBL:CU571020 EMBL:CU915608 RefSeq:NP_001231502.1
UniGene:Ssc.6297 Ensembl:ENSSSCT00000017278 GeneID:100157937
KEGG:ssc:100157937 Uniprot:F1RQH2
Length = 957
Score = 170 (64.9 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 60/196 (30%), Positives = 83/196 (42%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSV 184
VS G L R P MG P + + P +P + P HGM + + P G
Sbjct: 44 VSADGFLRRRPSMG-HPSMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMG---- 98
Query: 185 RTAAATSHSAIPGHQLVGTSGNTEAP--PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHK 242
S +PG + S + P P G + DV++ GA+ + WT HK
Sbjct: 99 -QMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNM----DVAA--GATSGAK-SMWTEHK 150
Query: 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYY 302
+ G YYYN T +ST+EKP K TP + L+ W ++ GK YY
Sbjct: 151 SPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGKPYY 199
Query: 303 YNSKMKVSSWQIPSEV 318
YNS+ K S W P E+
Sbjct: 200 YNSQTKESRWAKPKEL 215
Score = 170 (64.9 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXX 512
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 392 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKE 451
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNE 572
F++ LE E + +T Y+ ++ +G + A+ +DR + +
Sbjct: 452 EKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED 510
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVR 629
+ L + K++L ++T S+ WS+ + L D+P + + ++
Sbjct: 511 VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQ 570
Query: 630 HEDRE---VIFNEYV 641
+ D+E + F E++
Sbjct: 571 NMDKEDALICFEEHI 585
Score = 83 (34.3 bits), Expect = 5.2e-13, Sum P(3) = 5.2e-13
Identities = 42/189 (22%), Positives = 75/189 (39%)
Query: 461 FKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRAL--FERYVKTXXXXXXXXX 517
F + L E G + S W + P I D RF + Q AL F+ YV+
Sbjct: 617 FLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEK 676
Query: 518 XXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN---ERV 574
K +L++ ++ +T ++ F S R LD + +L N E+
Sbjct: 677 KI--------IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKA 728
Query: 575 LPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSVRHE-D 632
S+FKSML++ I L + W +++ +P ++ + E +
Sbjct: 729 EAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESE 788
Query: 633 REVIFNEYV 641
R+ IF +++
Sbjct: 789 RKRIFKDFM 797
Score = 75 (31.5 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 38/185 (20%), Positives = 82/185 (44%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKE+ +F+++L + + A W + R + K+P + S+R+++F++
Sbjct: 742 KMKRKES--AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE---SERKRIFKDF 796
Query: 747 IKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWS----TAKRVLKPEPR----Y 798
+ L C H ++ ++ ++ +S + K+ + E R +
Sbjct: 797 MHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEH 856
Query: 799 SKMPRKERE-ALWRRHAEEIQ-RKHKS-SLDQNEDNHKDSKSR---SSTDGGRPPSSSRR 852
S ER ++H ++ + R+HKS S + + + KD K + S D R S S+
Sbjct: 857 SSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKH 916
Query: 853 NQERR 857
++
Sbjct: 917 KSPKK 921
Score = 60 (26.2 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDR---------EKL 742
++EA +F+ LL E ASW ++ + DP+ A A L + EK
Sbjct: 393 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL-AKLSEKKQAFNAYKVQTEKE 451
Query: 743 FREHIKTLYERCAHDFRGLLA--EVITAEAAAQETED--GKT-VLNSWSTAKRVLKPEPR 797
+E ++ Y+ F+ L E +T+ ++ E G+ V N+ S R+ E
Sbjct: 452 EKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDV 511
Query: 798 YSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDN 831
+ +KE+E A+++++++ +L DN
Sbjct: 512 LFFLSKKEKE-----QAKQLRKRNWEALKNILDN 540
Score = 52 (23.4 bits), Expect = 6.5e-22, Sum P(3) = 6.5e-22
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 768 AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKS--SL 825
+ +A++ + ++ + + K K + R K E +A + +E R+ + +
Sbjct: 850 SRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTR 909
Query: 826 DQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
++E HK K ++ D G +S E
Sbjct: 910 QRSESKHKSPKKKTGKDSGNWDTSGSELSE 939
Score = 50 (22.7 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 29/141 (20%), Positives = 57/141 (40%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 752
KEA SFQ L K S T + + + NA + DR +++ + + L +
Sbjct: 461 KEAKESFQRFLENHEK--MTSTTRYKKAEQMFGEMEVWNA-ISERDRLEIYEDVLFFLSK 517
Query: 753 RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRR 812
+ + L A + T +WS A++ L P +++ +E + + +
Sbjct: 518 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAE--DEELQNMDKE 575
Query: 813 HAEEIQRKHKSSLDQNEDNHK 833
A +H +L++ E+ K
Sbjct: 576 DALICFEEHIRALEKEEEEEK 596
Score = 40 (19.1 bits), Expect = 5.5e-11, Sum P(3) = 5.5e-11
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 66 PQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYP 121
P T+ P + T+ + ++A ++A + SA +++ S + + P P
Sbjct: 260 PTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVGGTV-PVVP 314
Score = 37 (18.1 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 607 TLSSRWSKVKDILRDDPRYKS 627
T SRW+K K+ L D Y++
Sbjct: 204 TKESRWAKPKE-LEDLEGYQN 223
>UNIPROTKB|O75400 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0070064 "proline-rich region binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IDA] [GO:0007010 "cytoskeleton
organization" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0008360 "regulation of cell shape" evidence=IMP]
[GO:0032465 "regulation of cytokinesis" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0007010 GO:GO:0051301 GO:GO:0016477 GO:GO:0008380
GO:GO:0008360 GO:GO:0016607 GO:GO:0006397 GO:GO:0007049
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
UniGene:Hs.643580 PDB:2DYF PDBsum:2DYF GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 KO:K12821 eggNOG:COG5104
EMBL:AK000592 EMBL:AK024810 EMBL:AF049523 EMBL:AF049524
EMBL:AF049528 EMBL:BC011788 EMBL:BC027178 EMBL:U70667 EMBL:AF155096
EMBL:AF151059 IPI:IPI00337385 IPI:IPI00337386 IPI:IPI00337387
IPI:IPI00915929 RefSeq:NP_060362.3 PDB:1UZC PDB:1YWI PDB:1YWJ
PDB:1ZR7 PDB:2CQN PDB:2KZG PDB:2L5F PDB:2L9V PDB:2LKS PDBsum:1UZC
PDBsum:1YWI PDBsum:1YWJ PDBsum:1ZR7 PDBsum:2CQN PDBsum:2KZG
PDBsum:2L5F PDBsum:2L9V PDBsum:2LKS ProteinModelPortal:O75400
SMR:O75400 IntAct:O75400 MINT:MINT-1180299 STRING:O75400
PhosphoSite:O75400 PaxDb:O75400 PRIDE:O75400 DNASU:55660
Ensembl:ENST00000410080 GeneID:55660 KEGG:hsa:55660 UCSC:uc002tyi.2
CTD:55660 GeneCards:GC02M153508 HGNC:HGNC:16463 HPA:HPA038273
MIM:612941 neXtProt:NX_O75400 PharmGKB:PA28195 HOVERGEN:HBG059634
ChiTaRS:PRPF40A EvolutionaryTrace:O75400 GenomeRNAi:55660
NextBio:60391 PMAP-CutDB:O75400 ArrayExpress:O75400 Bgee:O75400
CleanEx:HS_PRPF40A Genevestigator:O75400 GermOnline:ENSG00000196504
Uniprot:O75400
Length = 957
Score = 170 (64.9 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXX 512
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 392 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKE 451
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNE 572
F++ LE E + +T Y+ ++ +G + A+ +DR + +
Sbjct: 452 EKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED 510
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVR 629
+ L + K++L ++T S+ WS+ + L D+P + + ++
Sbjct: 511 VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQ 570
Query: 630 HEDRE---VIFNEYV 641
+ D+E + F E++
Sbjct: 571 NMDKEDALICFEEHI 585
Score = 168 (64.2 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 59/196 (30%), Positives = 80/196 (40%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSV 184
VS G L R P MG P + + P +P + P HGM + + P G
Sbjct: 44 VSADGFLRRRPSMG-HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMG---- 98
Query: 185 RTAAATSHSAIPGHQLVGTSGNTEAP--PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHK 242
S +PG + S + P P G + + +S GA WT HK
Sbjct: 99 -QMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTAS--GAK-----SMWTEHK 150
Query: 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYY 302
+ G YYYN T +ST+EKP K TP + L+ W ++ GK YY
Sbjct: 151 SPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGKPYY 199
Query: 303 YNSKMKVSSWQIPSEV 318
YNS+ K S W P E+
Sbjct: 200 YNSQTKESRWAKPKEL 215
Score = 85 (35.0 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 42/189 (22%), Positives = 75/189 (39%)
Query: 461 FKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRAL--FERYVKTXXXXXXXXX 517
F + L E G + S W + P I D RF + Q AL F+ YV+
Sbjct: 617 FLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEK 676
Query: 518 XXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN---ERV 574
K +L++ ++ +T ++ F S R LD + +L N E+
Sbjct: 677 KI--------IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKA 728
Query: 575 LPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSVRHE-D 632
S+FKSML++ I L + W +++ +P ++ + E +
Sbjct: 729 EAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESE 788
Query: 633 REVIFNEYV 641
R+ IF +++
Sbjct: 789 RKRIFKDFM 797
Score = 75 (31.5 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 38/185 (20%), Positives = 82/185 (44%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKE+ +F+++L + + A W + R + K+P + S+R+++F++
Sbjct: 742 KMKRKES--AFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLE---SERKRIFKDF 796
Query: 747 IKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWS----TAKRVLKPEPR----Y 798
+ L C H ++ ++ ++ +S + K+ + E R +
Sbjct: 797 MHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEH 856
Query: 799 SKMPRKERE-ALWRRHAEEIQ-RKHKS-SLDQNEDNHKDSKSR---SSTDGGRPPSSSRR 852
S ER ++H ++ + R+HKS S + + + KD K + S D R S S+
Sbjct: 857 SSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKH 916
Query: 853 NQERR 857
++
Sbjct: 917 KSPKK 921
Score = 60 (26.2 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDR---------EKL 742
++EA +F+ LL E ASW ++ + DP+ A A L + EK
Sbjct: 393 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL-AKLSEKKQAFNAYKVQTEKE 451
Query: 743 FREHIKTLYERCAHDFRGLLA--EVITAEAAAQETED--GKT-VLNSWSTAKRVLKPEPR 797
+E ++ Y+ F+ L E +T+ ++ E G+ V N+ S R+ E
Sbjct: 452 EKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDV 511
Query: 798 YSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDN 831
+ +KE+E A+++++++ +L DN
Sbjct: 512 LFFLSKKEKE-----QAKQLRKRNWEALKNILDN 540
Score = 52 (23.4 bits), Expect = 1.0e-21, Sum P(3) = 1.0e-21
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 768 AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKS--SL 825
+ +A++ + ++ + + K K + R K E +A + +E R+ + +
Sbjct: 850 SRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTR 909
Query: 826 DQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
++E HK K ++ D G +S E
Sbjct: 910 QRSESKHKSPKKKTGKDSGNWDTSGSELSE 939
Score = 50 (22.7 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 29/141 (20%), Positives = 57/141 (40%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 752
KEA SFQ L K S T + + + NA + DR +++ + + L +
Sbjct: 461 KEAKESFQRFLENHEK--MTSTTRYKKAEQMFGEMEVWNA-ISERDRLEIYEDVLFFLSK 517
Query: 753 RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRR 812
+ + L A + T +WS A++ L P +++ +E + + +
Sbjct: 518 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAE--DEELQNMDKE 575
Query: 813 HAEEIQRKHKSSLDQNEDNHK 833
A +H +L++ E+ K
Sbjct: 576 DALICFEEHIRALEKEEEEEK 596
Score = 37 (18.1 bits), Expect = 1.8e-10, Sum P(3) = 1.8e-10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 607 TLSSRWSKVKDILRDDPRYKS 627
T SRW+K K+ L D Y++
Sbjct: 204 TKESRWAKPKE-LEDLEGYQN 223
>UNIPROTKB|G3MZC7 [details] [associations]
symbol:PRPF40A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0032465 "regulation of cytokinesis" evidence=IEA] [GO:0016477
"cell migration" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0008360 "regulation of cell shape" evidence=IEA]
[GO:0007010 "cytoskeleton organization" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0007010 GO:GO:0016477 GO:GO:0008360
GO:GO:0016363 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0032465
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GeneTree:ENSGT00530000062987 OMA:QETVADF
EMBL:DAAA02004583 Ensembl:ENSBTAT00000063676 Uniprot:G3MZC7
Length = 958
Score = 170 (64.9 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXX 512
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 393 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKE 452
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNE 572
F++ LE E + +T Y+ ++ +G + A+ +DR + +
Sbjct: 453 EKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYED 511
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVR 629
+ L + K++L ++T S+ WS+ + L D+P + + ++
Sbjct: 512 VLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQ 571
Query: 630 HEDRE---VIFNEYV 641
+ D+E + F E++
Sbjct: 572 NMDKEDALICFEEHI 586
Score = 168 (64.2 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 59/196 (30%), Positives = 80/196 (40%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSV 184
VS G L R P MG P + + P +P + P HGM + + P G
Sbjct: 44 VSADGFLRRRPSMG-HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMG---- 98
Query: 185 RTAAATSHSAIPGHQLVGTSGNTEAP--PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHK 242
S +PG + S + P P G + + +S GA WT HK
Sbjct: 99 -QMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTS--GAK-----SMWTEHK 150
Query: 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYY 302
+ G YYYN T +ST+EKP K TP + L+ W ++ GK YY
Sbjct: 151 SPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGKPYY 199
Query: 303 YNSKMKVSSWQIPSEV 318
YNS+ K S W P E+
Sbjct: 200 YNSQTKESRWAKPKEL 215
Score = 83 (34.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 42/189 (22%), Positives = 75/189 (39%)
Query: 461 FKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRAL--FERYVKTXXXXXXXXX 517
F + L E G + S W + P I D RF + Q AL F+ YV+
Sbjct: 618 FLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEK 677
Query: 518 XXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN---ERV 574
K +L++ ++ +T ++ F S R LD + +L N E+
Sbjct: 678 KI--------IKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKA 729
Query: 575 LPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSVRHE-D 632
S+FKSML++ I L + W +++ +P ++ + E +
Sbjct: 730 EAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESE 789
Query: 633 REVIFNEYV 641
R+ IF +++
Sbjct: 790 RKRIFKDFM 798
Score = 71 (30.1 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 33/171 (19%), Positives = 71/171 (41%)
Query: 689 KVRRKEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
K++RKE+ +F+++L + + A W + R + K+P + S+R+++F++
Sbjct: 743 KMKRKES--AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLE---SERKRIFKDF 797
Query: 747 IKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER 806
+ L C H ++ ++ ++ +S K R + R
Sbjct: 798 MHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQR-----SESR 852
Query: 807 EALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQERR 857
A + E +R +K S + K K R +D P S + R ++++
Sbjct: 853 SASEHSSSAESERSYKKS---KKHKKKSKKRRHKSDS--PESDAEREKDKK 898
Score = 60 (26.2 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 36/154 (23%), Positives = 68/154 (44%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDR---------EKL 742
++EA +F+ LL E ASW ++ + DP+ A A L + EK
Sbjct: 394 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL-AKLSEKKQAFNAYKVQTEKE 452
Query: 743 FREHIKTLYERCAHDFRGLLA--EVITAEAAAQETED--GKT-VLNSWSTAKRVLKPEPR 797
+E ++ Y+ F+ L E +T+ ++ E G+ V N+ S R+ E
Sbjct: 453 EKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDV 512
Query: 798 YSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDN 831
+ +KE+E A+++++++ +L DN
Sbjct: 513 LFFLSKKEKE-----QAKQLRKRNWEALKNILDN 541
Score = 51 (23.0 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 768 AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKS--SL 825
+ +A++ + ++ + + K K + R K E +A + +E R+ + +
Sbjct: 851 SRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDREGEKDRTR 910
Query: 826 DQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
++E HK K ++ D G +S E
Sbjct: 911 QRSESKHKSPKKKTGKDSGNWDTSGSELSE 940
Score = 50 (22.7 bits), Expect = 6.0e-08, Sum P(3) = 6.0e-08
Identities = 29/141 (20%), Positives = 57/141 (40%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 752
KEA SFQ L K S T + + + NA + DR +++ + + L +
Sbjct: 462 KEAKESFQRFLENHEK--MTSTTRYKKAEQMFGEMEVWNA-ISERDRLEIYEDVLFFLSK 518
Query: 753 RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRR 812
+ + L A + T +WS A++ L P +++ +E + + +
Sbjct: 519 KEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAE--DEELQNMDKE 576
Query: 813 HAEEIQRKHKSSLDQNEDNHK 833
A +H +L++ E+ K
Sbjct: 577 DALICFEEHIRALEKEEEEEK 597
Score = 42 (19.8 bits), Expect = 8.8e-11, Sum P(3) = 8.8e-11
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 66 PQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYP 121
P T+ P + T+ + ++A ++A + SA +++ S + + P P
Sbjct: 262 PTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVSGTV-PVVP 316
Score = 37 (18.1 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 607 TLSSRWSKVKDILRDDPRYKS 627
T SRW+K K+ L D Y++
Sbjct: 204 TKESRWAKPKE-LEDLEGYQN 223
>MGI|MGI:1917821 [details] [associations]
symbol:Tcerg1l "transcription elongation regulator 1-like"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
MGI:MGI:1917821 SUPFAM:SSF51045 eggNOG:NOG307751 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GeneTree:ENSGT00530000062987 EMBL:AC127598 EMBL:AC127287
EMBL:AK017700 EMBL:BC048631 EMBL:BC107234 EMBL:BC107235
IPI:IPI00224840 IPI:IPI00404018 IPI:IPI00670719 RefSeq:NP_899112.2
UniGene:Mm.334297 ProteinModelPortal:Q3B807 SMR:Q3B807
PhosphoSite:Q3B807 PRIDE:Q3B807 Ensembl:ENSMUST00000160436
GeneID:70571 KEGG:mmu:70571 UCSC:uc009kez.1 UCSC:uc012fvn.1
CTD:256536 HOGENOM:HOG000170000 HOVERGEN:HBG108553
InParanoid:Q3B807 OMA:LVPIFPH OrthoDB:EOG47D9G3 ChiTaRS:TCERG1L
NextBio:331888 Bgee:Q3B807 CleanEx:MM_TCERG1L Genevestigator:Q3B807
Uniprot:Q3B807
Length = 590
Score = 215 (80.7 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 50/124 (40%), Positives = 70/124 (56%)
Query: 455 EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXX 514
EE + F++ML ERGV+ FS WEKEL KIVFDPR+ + S+ R+ +FE++VKT
Sbjct: 455 EERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEE-RKQIFEQFVKTRIKEEY 513
Query: 515 XXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNER 573
FK+LLEE + T ++ F +K G D RF + RKD+E N+
Sbjct: 514 KERKSKLLLAKEEFKKLLEE--SKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQF 571
Query: 574 VLPL 577
+L L
Sbjct: 572 ILIL 575
Score = 77 (32.2 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 279 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
P++ + G+ W +V T D + +++N M++S W+ P ++
Sbjct: 338 PVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPVDL 377
Score = 51 (23.0 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 127 GVSPQGPLLRPPQMGVRPWLPFLP-YPAAYPSPFPL-PAHGMPN 168
GV+P LL Q P LP LP +PA PL P P+
Sbjct: 55 GVAPPPVLLASAQPASAPLLPRLPGWPAPGEPLLPLLPLSSAPD 98
Score = 50 (22.7 bits), Expect = 2.0e-15, Sum P(3) = 2.0e-15
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 200 LVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGEST 259
LVG + E PP +E + + AS W T V+++N S
Sbjct: 312 LVGDKEDKEPPPILVRGEETAAKGNKPV-ASTPVPGSPWCVVWTGDDRVFFFNPTMQLSV 370
Query: 260 YEKPAGFKGEPD 271
+EKP + D
Sbjct: 371 WEKPVDLQNRGD 382
Score = 42 (19.8 bits), Expect = 1.3e-14, Sum P(3) = 1.3e-14
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 244 DTGIVYYYNAVTGESTY--EKPA-GF--KGEPDKVPVQP--TPISMEHLTGTDWALVTTN 296
D V++Y + G+ + P+ G + VP+ P P ++ G +W +
Sbjct: 98 DHAAVHHYPLLHGQWLFGGHSPSIGLAPSSAVELVPLFPHVCPSTLSPPVGKNW-IDKRM 156
Query: 297 DGKKYYYNSKMKV-SSWQIPSE 317
K ++N+ + S+W P E
Sbjct: 157 PNYKIFFNNPFALDSTWMYPEE 178
>TAIR|locus:2091171 [details] [associations]
symbol:PRP40B "pre-mRNA-processing protein 40B"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008380 "RNA splicing" evidence=IPI]
[GO:0070063 "RNA polymerase binding" evidence=IPI]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006355 GO:GO:0008380 GO:GO:0006351 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AP000417 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 IPI:IPI00525827
IPI:IPI01020219 PIR:T52396 RefSeq:NP_188601.4 UniGene:At.27544
HSSP:O75400 ProteinModelPortal:F4JCC1 SMR:F4JCC1 PRIDE:F4JCC1
EnsemblPlants:AT3G19670.1 GeneID:821504 KEGG:ath:AT3G19670
TAIR:At3g19670 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 Uniprot:F4JCC1
Length = 992
Score = 167 (63.8 bits), Expect = 8.9e-16, Sum P(4) = 8.9e-16
Identities = 50/189 (26%), Positives = 79/189 (41%)
Query: 454 KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXX 513
K E + FK +LK V WE+ + +I+ D R+ A+++ R+ F ++
Sbjct: 450 KLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGERKQAFNEFLLQTKRAA 509
Query: 514 XXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNE 572
FK++LEE E + ST + + D RF+AL+R KDR + +
Sbjct: 510 EEERLARQKKLYEDFKRMLEECVE-LTPSTRWSKTVTMFEDDERFKALEREKDRRNIFED 568
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED 632
V L +K L I +S+W KV+D L D R + D
Sbjct: 569 HVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKID 628
Query: 633 REVIFNEYV 641
+ IF EY+
Sbjct: 629 QLEIFQEYL 637
Score = 116 (45.9 bits), Expect = 8.9e-16, Sum P(4) = 8.9e-16
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 235 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVT 294
L W H + G Y++N T +ST+EKP ++ + TDW +
Sbjct: 206 LTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADAR-----------TDWKEHS 254
Query: 295 TNDGKKYYYNSKMKVSSWQIPSEV 318
+ DG+KYYYN K S+W +P E+
Sbjct: 255 SPDGRKYYYNKITKQSTWTMPEEM 278
Score = 78 (32.5 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 30/154 (19%), Positives = 67/154 (43%)
Query: 691 RRKEAVTSFQALLVETIK-DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKT 749
R+K+ F+ +L E ++ P W+++ E D + +A + DR +F +H+
Sbjct: 516 RQKKLYEDFKRMLEECVELTPSTRWSKTVTMFEDDERFKALERE---KDRRNIFEDHVSE 572
Query: 750 LYERC-AHDFRGLLAEVITAEAAAQETEDGKTVLNS-WSTAKRVLKPEPRYSKMPRKERE 807
L E+ +I + + K NS W + L+ + R S++ + ++
Sbjct: 573 LKEKGRVKALEDRKRNIIEYKRFLESCNFIKP--NSQWRKVQDRLEVDERCSRLEKIDQL 630
Query: 808 ALWRRHAEEIQRKH-------KSSLDQNEDNHKD 834
+++ + +++R+ K L + E H+D
Sbjct: 631 EIFQEYLRDLEREEEEKKKIQKEELKKVERKHRD 664
Score = 71 (30.1 bits), Expect = 2.7e-11, Sum P(4) = 2.7e-11
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 233 EQLDA---WTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267
E+ DA W H + G YYYN +T +ST+ P K
Sbjct: 242 ERADARTDWKEHSSPDGRKYYYNKITKQSTWTMPEEMK 279
Score = 66 (28.3 bits), Expect = 0.00040, Sum P(4) = 0.00040
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 599 MLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 641
MLR DIT SS W ++K ++ + ++ E R+ F +YV
Sbjct: 802 MLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYV 845
Score = 54 (24.1 bits), Expect = 8.9e-16, Sum P(4) = 8.9e-16
Identities = 29/127 (22%), Positives = 54/127 (42%)
Query: 709 DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAE-VIT 767
D + S E +LE Q + + + +++K+ +E +K + + +F GLL E + T
Sbjct: 618 DERCSRLEKIDQLEIF-QEYLRDLEREEEEKKKIQKEELKKVERKHRDEFHGLLDEHIAT 676
Query: 768 AEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREA----LWRRHAEEIQRKHKS 823
E A KT+ W +K P YS + A L+ E+++++
Sbjct: 677 GELTA------KTI---WRDYLMKVKDLPVYSAIASNSSGATPKDLFEDAVEDLKKRDHE 727
Query: 824 SLDQNED 830
Q +D
Sbjct: 728 LKSQIKD 734
Score = 40 (19.1 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 795 EPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRR 852
EP + R R++ RH E +H S + + D+ K+S GG S +R
Sbjct: 906 EPHGKERRRSGRDS-HNRHRE----RHTSVKENDTDHFKESHKAG---GGHKKSRHQR 955
Score = 38 (18.4 bits), Expect = 8.9e-16, Sum P(4) = 8.9e-16
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 94 GLRPSVPTPSAPSNSGSAIQHQIYPTYPSL 123
G R PSA S GS + Q+ T PS+
Sbjct: 138 GPRALFSYPSATSYEGSRVPPQV--TGPSI 165
>UNIPROTKB|F5H578 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
IPI:IPI01018842 ProteinModelPortal:F5H578 SMR:F5H578 PRIDE:F5H578
Ensembl:ENST00000545856 UCSC:uc002tyj.2 ArrayExpress:F5H578
Bgee:F5H578 Uniprot:F5H578
Length = 448
Score = 168 (64.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 59/196 (30%), Positives = 80/196 (40%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSV 184
VS G L R P MG P + + P +P + P HGM + + P G
Sbjct: 44 VSADGFLRRRPSMG-HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMG---- 98
Query: 185 RTAAATSHSAIPGHQLVGTSGNTEAP--PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHK 242
S +PG + S + P P G + + +S GA WT HK
Sbjct: 99 -QMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTAS--GAK-----SMWTEHK 150
Query: 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYY 302
+ G YYYN T +ST+EKP K TP + L+ W ++ GK YY
Sbjct: 151 SPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGKPYY 199
Query: 303 YNSKMKVSSWQIPSEV 318
YNS+ K S W P E+
Sbjct: 200 YNSQTKESRWAKPKEL 215
Score = 107 (42.7 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY-VKT 508
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y V+T
Sbjct: 392 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 448
Score = 68 (29.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 595 SFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV-RHEDREVIFNEY 640
+FK +L+EK + ++ W + ++ +DPRY ++ + +++ FN Y
Sbjct: 399 AFKELLKEKR-VPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 444
Score = 52 (23.4 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
++EA +F+ LL E ASW ++ + DP+ A A L S++++ F +
Sbjct: 393 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSAL-AKL--SEKKQAFNAY 444
Score = 44 (20.5 bits), Expect = 7.9e-09, Sum P(3) = 7.9e-09
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 784 SWSTAKRVLKPEPRYSKMPR 803
SW A +++ +PRYS + +
Sbjct: 414 SWEQAMKMIINDPRYSALAK 433
Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 607 TLSSRWSKVKDILRDDPRYKS 627
T SRW+K K+ L D Y++
Sbjct: 204 TKESRWAKPKE-LEDLEGYQN 223
>FB|FBgn0261641 [details] [associations]
symbol:CG42724 species:7227 "Drosophila melanogaster"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 EMBL:AE014297 Gene3D:2.20.70.10 SUPFAM:SSF51045
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:Q61051 GeneTree:ENSGT00530000062987 UniGene:Dm.2280
GeneID:40785 KEGG:dme:Dmel_CG42724 FlyBase:FBgn0261641
GenomeRNAi:40785 NextBio:820572 EMBL:AY069106 RefSeq:NP_001189186.1
RefSeq:NP_788585.1 SMR:Q9VI14 MINT:MINT-794860
EnsemblMetazoa:FBtr0303014 EnsemblMetazoa:FBtr0303017
UCSC:CG33097-RA InParanoid:Q9VI14 Uniprot:Q9VI14
Length = 763
Score = 190 (71.9 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 41/119 (34%), Positives = 67/119 (56%)
Query: 458 IIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXX 517
+ +FKEML+E+ V+ FS WEKEL KIVFDPR+ + S+ R+ +FE+YVK
Sbjct: 588 VTQFKEMLREKDVSAFSTWEKELHKIVFDPRYLLLTSKE-RKQVFEKYVKDRAEEERKEK 646
Query: 518 XXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVL 575
F+ L+EE + + + F ++ D R+ A+++ ++RE L NE ++
Sbjct: 647 RNKMRQKREDFRSLMEEAR--LHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNEYIV 703
Score = 95 (38.5 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 36/140 (25%), Positives = 54/140 (38%)
Query: 182 SSVRTAAATSHSAIPGHQLVGTSGNTE--APPSGTDKKEHVHDVSSRIGASVNEQLDAWT 239
S V A AT+ S +P H L + + P G D ++ + A+ A
Sbjct: 337 SGVAPAVATAPSGLPPHLLPNPMMHMPPGSGPPGFDPHAAFAAAAAAMKANSENTKAAQA 396
Query: 240 AHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKV-PVQPTPISMEHLTGTDWALVTTNDG 298
A E +K A + DK PV TPI+ GT W +V T D
Sbjct: 397 AALEKEAKKAAEEKRKKEEEQKKAAASAKQTDKSRPVTSTPIA-----GTPWCVVWTGDS 451
Query: 299 KKYYYNSKMKVSSWQIPSEV 318
+ ++YN + S W P ++
Sbjct: 452 RVFFYNPSTRTSVWDRPEDL 471
Score = 89 (36.4 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 594 SSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYV 641
+ FK MLREK D++ S W K + DPRY + ++R+ +F +YV
Sbjct: 589 TQFKEMLREK-DVSAFSTWEKELHKIVFDPRYLLLTSKERKQVFEKYV 635
Score = 86 (35.3 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 27/115 (23%), Positives = 52/115 (45%)
Query: 528 FKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLXXXXXXXXXX 587
FK++L E +D+ + ++ K DPR+ L K+R+ + + V
Sbjct: 591 FKEMLRE--KDVSAFSTWEKELHKIVFDPRYLLLTSKERKQVFEKYVKDRAEEERKEKRN 648
Query: 588 XXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYV 641
F+S++ E+ + S +S+ D RY+++ +RE +FNEY+
Sbjct: 649 KMRQKREDFRSLM-EEARLHGKSSFSEFSQRNAKDERYRAIEKVRERESLFNEYI 702
Score = 85 (35.0 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 60/215 (27%), Positives = 77/215 (35%)
Query: 55 SFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQH 114
++S P G V TQA + R + + AG SV P S+ S
Sbjct: 138 TWSRPDGPAVKIMTQAEVEEMAKRPAQAAKT----EAKAG-ETSVEIPPVSSHLTS---- 188
Query: 115 QIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLP--FLPYPAAYPSPFPLPAHGMPNPSVS 172
Q P S PP + PLL P VR P F P P F P MP P+
Sbjct: 189 QPPPHLMSQPPPNAA--APLLSQPPPNVRQQPPPMFQPPGMQAPPGFGQPPFCMPPPTYG 246
Query: 173 QIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVN 232
PG A A IP Q + P K V D + + A
Sbjct: 247 F-----PG--GPAPAGAPWGVGIPPWQQ--QQHMQDKPAKSLIIKPGVIDPA--VIARAA 295
Query: 233 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267
E W+ H+ G YY++A GES +EKP +
Sbjct: 296 E----WSEHRAPDGRPYYFHAGRGESVWEKPQALR 326
Score = 82 (33.9 bits), Expect = 0.00079, Sum P(3) = 0.00079
Identities = 32/130 (24%), Positives = 63/130 (48%)
Query: 696 VTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCA 755
VT F+ +L E ++W + K+ DP+ L S +R+++F +++K E
Sbjct: 588 VTQFKEMLREKDVSAFSTWEKELHKIVFDPRYLL----LTSKERKQVFEKYVKDRAEEER 643
Query: 756 HDFRGLLAEVITAEAAAQETE--DGKTVLNSWSTAKRVLKPEPRYSKMPR-KEREALWRR 812
+ R + + + E GK+ + +S +R K E RY + + +ERE+L+
Sbjct: 644 KEKRNKMRQKREDFRSLMEEARLHGKSSFSEFS--QRNAKDE-RYRAIEKVRERESLFNE 700
Query: 813 HAEEIQRKHK 822
+ E++R+ K
Sbjct: 701 YIVEVRRREK 710
Score = 75 (31.5 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265
+ W K + G YYY+AVT E+T+ +P G
Sbjct: 115 EIWVETKAEDGRSYYYHAVTRETTWSRPDG 144
Score = 69 (29.3 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 269 EPDKVPVQPTPISMEHLTGTD--WALVTTNDGKKYYYNSKMKVSSWQIP 315
+P + P Q P +TG W DG+ YYY++ + ++W P
Sbjct: 95 QPQQ-PQQQAPSGANGVTGPPEIWVETKAEDGRSYYYHAVTRETTWSRP 142
Score = 65 (27.9 bits), Expect = 3.2e-12, Sum P(3) = 3.2e-12
Identities = 25/94 (26%), Positives = 40/94 (42%)
Query: 152 PAAYPSPFPLPAHGMPNPSVSQIDAQ-PPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAP 210
PA +P LP H +PNP + PPG A A + +A+ + S NT+A
Sbjct: 341 PAVATAPSGLPPHLLPNPMMHMPPGSGPPGFDP-HAAFAAAAAAMKAN-----SENTKAA 394
Query: 211 PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTD 244
+ +KE + ++ A +A +TD
Sbjct: 395 QAAALEKEAKKAAEEKRKKEEEQKKAAASAKQTD 428
Score = 57 (25.1 bits), Expect = 3.4e-06, Sum P(4) = 3.4e-06
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 687 RLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
R K+R+K F++L+ E ++S++E + KD + RA +RE LF E+
Sbjct: 647 RNKMRQKRE--DFRSLMEEARLHGKSSFSEFSQRNAKDERYRAIEK---VRERESLFNEY 701
Query: 747 IKTLYERCAHD 757
I + R D
Sbjct: 702 IVEVRRREKED 712
Score = 49 (22.3 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 289 DWALVTTNDGKKYYYNSKMKVSSWQIP 315
+W+ DG+ YY+++ S W+ P
Sbjct: 296 EWSEHRAPDGRPYYFHAGRGESVWEKP 322
Score = 44 (20.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 52 TIPSFSTPPGLFVTPQTQAPPG 73
T PS PP L P PPG
Sbjct: 345 TAPS-GLPPHLLPNPMMHMPPG 365
Score = 37 (18.1 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 7/19 (36%), Positives = 7/19 (36%)
Query: 54 PSFSTPPGLFVTPQTQAPP 72
P PPG P PP
Sbjct: 225 PGMQAPPGFGQPPFCMPPP 243
>UNIPROTKB|Q6NWY9 [details] [associations]
symbol:PRPF40B "Pre-mRNA-processing factor 40 homolog B"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 EMBL:CH471111 Gene3D:2.20.70.10
SUPFAM:SSF51045 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 HSSP:O75400 KO:K12821 eggNOG:COG5104
HOVERGEN:HBG059634 EMBL:AK027117 EMBL:AK123353 EMBL:AL137459
EMBL:AL834216 EMBL:BC050398 EMBL:BC067364 EMBL:AF049525
IPI:IPI00446681 IPI:IPI00465345 IPI:IPI00646529 IPI:IPI00789604
PIR:T46402 RefSeq:NP_001026868.2 UniGene:Hs.706827
ProteinModelPortal:Q6NWY9 SMR:Q6NWY9 STRING:Q6NWY9
PhosphoSite:Q6NWY9 DMDM:74736936 PaxDb:Q6NWY9 PRIDE:Q6NWY9
Ensembl:ENST00000261897 Ensembl:ENST00000380281 GeneID:25766
KEGG:hsa:25766 UCSC:uc001rup.1 UCSC:uc001ruq.1 UCSC:uc001rur.1
CTD:25766 GeneCards:GC12P049963 HGNC:HGNC:25031 HPA:HPA038426
HPA:HPA038599 neXtProt:NX_Q6NWY9 PharmGKB:PA143485582
InParanoid:Q6NWY9 OMA:QQLEEGP ChiTaRS:PRPF40B GenomeRNAi:25766
NextBio:46887 ArrayExpress:Q6NWY9 Bgee:Q6NWY9 CleanEx:HS_PRPF40B
Genevestigator:Q6NWY9 Uniprot:Q6NWY9
Length = 871
Score = 140 (54.3 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 50/177 (28%), Positives = 70/177 (39%)
Query: 147 PFLPYPAAYPSPFPLPAHGMPNPSVSQ--IDAQPPGLSSVRT---AAATSHSAIPGHQLV 201
PF+P P P PFP P G+P S I PPG+ A + IPG
Sbjct: 5 PFMP-PPGIPPPFP-PM-GLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPP 61
Query: 202 GTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYE 261
G T D +S A W+ H G +YYYNA +S +E
Sbjct: 62 MMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWE 121
Query: 262 KPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
KP+ K + + + L+ W ++ GK YYYN++ K S W P ++
Sbjct: 122 KPSVLKSKAELL-----------LSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDL 167
Score = 135 (52.6 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 37/194 (19%), Positives = 81/194 (41%)
Query: 454 KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXX 513
+E+ FKE+L+++ V + WE+ + +V DPR+ A+ S ++ F Y
Sbjct: 276 REKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEE 335
Query: 514 XXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNER 573
+ LE+ E + +T Y+ ++ +G + + +DR+ + ++
Sbjct: 336 KEEARLRAKEAKQTLQHFLEQ-HERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDV 394
Query: 574 VLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY------KS 627
+ L + KS+L + + WS+ + L D+P + ++
Sbjct: 395 LFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQN 454
Query: 628 VRHEDREVIFNEYV 641
+ ED + F E++
Sbjct: 455 MDKEDALICFEEHI 468
Score = 88 (36.0 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRP-WLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQ-P 178
P +PP G+ P P + P M RP +P +P P P P LP G P P ++QI P
Sbjct: 5 PFMPPPGIPPPFPPMGLPPMSQRPPAIPPMP-PGILP-PM-LPPMGAP-PPLTQIPGMVP 60
Query: 179 PGLSSV-RTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHV 220
P + + A + + PG ++ PP EHV
Sbjct: 61 PMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRAL-WSEHV 102
Score = 76 (31.8 bits), Expect = 3.0e-08, Sum P(3) = 3.0e-08
Identities = 41/194 (21%), Positives = 75/194 (38%)
Query: 456 ECIIKFKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQ--SARRALFERYVKTXXXX 512
E F + L E G + S W + P + D RF + Q S LF+ YV+
Sbjct: 495 EAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKAR 554
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN- 571
K +L++ ++ +T ++ F D R ALD + +L N
Sbjct: 555 FHDEKKI--------IKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNS 606
Query: 572 --ERVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSV 628
E+ ++F+SMLR+ + L + W +V++ D ++ +
Sbjct: 607 LLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQI 666
Query: 629 RHEDREV-IFNEYV 641
E + +F E++
Sbjct: 667 TLESERIRLFREFL 680
Score = 60 (26.2 bits), Expect = 1.2e-06, Sum P(3) = 1.2e-06
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 768 AEAAAQETEDGKTVLN--SWSTAKRVLKPEPRYSKMPR-KEREALWRRHAEEIQRKHK 822
A+ A +E K V + SW A +++ +PRYS +P+ E++ + + + +++ K
Sbjct: 279 AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEK 336
Score = 53 (23.7 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 54/214 (25%), Positives = 72/214 (33%)
Query: 89 FYSSAGLRPSVPTPSAP--SNSGSAIQHQ---IYPTYPSLPPIGVSPQGPLLRPPQMGVR 143
F G+ P P P S AI I P P LPP+G P PL + P M V
Sbjct: 6 FMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGILP--PMLPPMGAPP--PLTQIPGM-VP 60
Query: 144 PWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPP-GLSSVRTAA--------ATSHSA 194
P +P + PA + P G S + PP L S A A +
Sbjct: 61 PMMPGMLMPAVPVTAATAP--GADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQS 118
Query: 195 IPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKT-DTGIVYYYNA 253
+ V S E S KE+ D + + WT K D V
Sbjct: 119 VWEKPSVLKS-KAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVLVKQE 177
Query: 254 VTGESTYEKPAGFKGEPDK-------VPVQPTPI 280
G+ + P + +P + VP PTP+
Sbjct: 178 AAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPV 211
Score = 51 (23.0 bits), Expect = 9.5e-06, Sum P(3) = 9.5e-06
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 461 FKEMLKER--GVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507
F+ ML++ + + WE+ + V D F+ I +S R LF +++
Sbjct: 633 FRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQ 681
Score = 50 (22.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 711 QASWTESRPKLEKDPQGRATNADLDSSDREKL---FREHIKTLYER 753
Q +W++++ L +P A + L + D+E F EHI+ L ER
Sbjct: 430 QTTWSQAQQYLMDNPSF-AQDHQLQNMDKEDALICFEEHIRAL-ER 473
Score = 49 (22.3 bits), Expect = 6.4e-15, Sum P(3) = 6.4e-15
Identities = 27/127 (21%), Positives = 54/127 (42%)
Query: 735 DSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKP 794
++ +RE+ +E + + R A FR +L + + A E+ + S +++
Sbjct: 612 EARERERE-KEEARRMRRREAA-FRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLE 669
Query: 795 EPRYSKMPRKEREALWRRHAEEIQRK-HKSSLDQNEDNHKDSKSRSSTDGGR---PPSSS 850
R ++ R+ + L + + + K K + +HK S S S ++ PP S
Sbjct: 670 SERI-RLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHHKRSHSPSGSESEEEELPPPSL 728
Query: 851 RRNQERR 857
R + RR
Sbjct: 729 RPPKRRR 735
Score = 46 (21.3 bits), Expect = 6.0e-06, Sum P(3) = 6.0e-06
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 692 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ 726
R++A +F+ LL + ASW ++ + DP+
Sbjct: 276 REKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPR 310
Score = 45 (20.9 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 23/125 (18%), Positives = 51/125 (40%)
Query: 700 QALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKL---FREHIKTLYERCAH 756
Q L + + P +S + E++ + + L S+REK F+E ++
Sbjct: 237 QGFLQQLEEGPSSSGQHQPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNA 296
Query: 757 DFRGLLAEVITAE--AAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHA 814
+ + V+T +A + + K N++ + K E +++ KE + +
Sbjct: 297 SWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQRE--KEEKEEARLRAKEAKQTLQHFL 354
Query: 815 EEIQR 819
E+ +R
Sbjct: 355 EQHER 359
Score = 42 (19.8 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 8/38 (21%), Positives = 20/38 (52%)
Query: 818 QRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
+R+HKS+ ++E + ++ + S + + R Q+
Sbjct: 788 KRRHKSNSPESETDPEEKAGKESDEKEQEQDKDRELQQ 825
Score = 42 (19.8 bits), Expect = 5.0e-05, Sum P(3) = 5.0e-05
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 152 PAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAAT 190
P P P P+P P P+ ++ +P G AT
Sbjct: 195 PQPQPDPPPVPPGPTPVPT-GLLEPEPGGSEDCDVLEAT 232
Score = 37 (18.1 bits), Expect = 1.1e-13, Sum P(3) = 1.1e-13
Identities = 13/59 (22%), Positives = 22/59 (37%)
Query: 789 KRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPP 847
++ KP+ + K K EE K +Q +D KD + + + R P
Sbjct: 777 RKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESDEKEQEQD--KDRELQQAELPNRSP 833
>MGI|MGI:1925583 [details] [associations]
symbol:Prpf40b "PRP40 pre-mRNA processing factor 40 homolog
B (yeast)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 MGI:MGI:1925583 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 Gene3D:2.20.70.10 SUPFAM:SSF51045 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
HSSP:O75400 KO:K12821 eggNOG:COG5104 HOVERGEN:HBG059634
GeneTree:ENSGT00530000062987 HOGENOM:HOG000231802 CTD:25766
ChiTaRS:PRPF40B EMBL:AF135440 EMBL:AK019183 EMBL:AK140075
EMBL:BC051961 EMBL:BC082994 IPI:IPI00377927 IPI:IPI00875105
IPI:IPI00876460 RefSeq:NP_061256.1 UniGene:Mm.358668
ProteinModelPortal:Q80W14 SMR:Q80W14 STRING:Q80W14
PhosphoSite:Q80W14 PaxDb:Q80W14 PRIDE:Q80W14
Ensembl:ENSMUST00000145482 GeneID:54614 KEGG:mmu:54614
UCSC:uc007xpg.1 UCSC:uc007xph.1 NextBio:311428 Bgee:Q80W14
Genevestigator:Q80W14 Uniprot:Q80W14
Length = 870
Score = 136 (52.9 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 49/177 (27%), Positives = 70/177 (39%)
Query: 147 PFLPYPAAYPSPFPLPAHGMPNPSVSQ--IDAQPPGLSSVRT---AAATSHSAIPGHQLV 201
PF+P P P PFP P G+P S I PPG+ A + IPG
Sbjct: 5 PFMP-PPGLPPPFP-PM-GLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPP 61
Query: 202 GTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYE 261
G T D +S A W+ H G +YYYNA +S +E
Sbjct: 62 MMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWE 121
Query: 262 KPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
KP+ K + + + L+ W ++ GK YYYN++ + S W P ++
Sbjct: 122 KPSVLKSKAELL-----------LSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDL 167
Score = 132 (51.5 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 36/194 (18%), Positives = 83/194 (42%)
Query: 454 KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXX 513
+E+ FKE+L+++ V + WE+ + +V DPR+ A+ S ++ F Y
Sbjct: 276 REKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEE 335
Query: 514 XXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNER 573
+ LE+ E + +T Y+ ++ +G + + ++R+ + ++
Sbjct: 336 KEEARLRAKEAKQTLQHFLEQ-HERMTSTTRYRRAEQTFGDLEVWAVVPERERKEVYDDV 394
Query: 574 VLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVRH 630
+ L + KS+L + + WS+ + L D+P + + +++
Sbjct: 395 LFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQN 454
Query: 631 EDRE---VIFNEYV 641
D+E + F E++
Sbjct: 455 MDKEDALICFEEHI 468
Score = 86 (35.3 bits), Expect = 4.2e-09, Sum P(3) = 4.2e-09
Identities = 32/103 (31%), Positives = 45/103 (43%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRP-WLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQ-P 178
P +PP G+ P P + P M RP +P +P P P P LP G P P ++QI P
Sbjct: 5 PFMPPPGLPPPFPPMGLPPMSQRPPAIPPMP-PGILP-PM-LPPMGAP-PPLTQIPGMVP 60
Query: 179 PGLSSV-RTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHV 220
P + + A + + PG ++ PP EHV
Sbjct: 61 PMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRAL-WSEHV 102
Score = 78 (32.5 bits), Expect = 2.5e-08, Sum P(3) = 2.5e-08
Identities = 41/194 (21%), Positives = 75/194 (38%)
Query: 456 ECIIKFKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQ--SARRALFERYVKTXXXX 512
E F + L E G + S W + P + D RF + Q S LF+ YV+
Sbjct: 495 EAFQSFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKAR 554
Query: 513 XXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN- 571
K +L++ ++ +T ++ F D R ALD + +L N
Sbjct: 555 FHDEKKI--------IKDILKDRGFCVEVNTAFEDFAHVISFDKRAAALDAGNIKLTFNS 606
Query: 572 --ERVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGD-ITLSSRWSKVKDILRDDPRYKSV 628
E+ ++F+SMLR+ + L + W +V++ D ++ +
Sbjct: 607 LLEKAEARETEREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQI 666
Query: 629 RHEDREV-IFNEYV 641
E + +F E++
Sbjct: 667 TLESERIRLFREFL 680
Score = 61 (26.5 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 55/212 (25%), Positives = 73/212 (34%)
Query: 89 FYSSAGLRPSVPTPSAP--SNSGSAIQHQ---IYPTYPSLPPIGVSPQGPLLRPPQMGVR 143
F GL P P P S AI I P P LPP+G P PL + P M V
Sbjct: 6 FMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGILP--PMLPPMGAPP--PLTQIPGM-VP 60
Query: 144 PWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPP-GLSSVRTAA--------ATSHSA 194
P +P + PA + P G S + PP L S A A +
Sbjct: 61 PMMPGMLMPAVPVTAATAP--GADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQS 118
Query: 195 IPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKT--DTGIVYYYN 252
+ V S E S KE+ D + Q WT K D +
Sbjct: 119 VWEKPSVLKS-KAELLLSQCPWKEYKSDTGKPYYYNNQSQESRWTRPKDLDDLEALVKQE 177
Query: 253 AVTGESTYE----KPAGFKGEPDKVPVQPTPI 280
+ + T + +P + +PD P+ P PI
Sbjct: 178 SAGKQQTQQLQTLQPQPPQPQPDPPPIPPGPI 209
Score = 60 (26.2 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 768 AEAAAQETEDGKTVLN--SWSTAKRVLKPEPRYSKMPR-KEREALWRRHAEEIQRKHK 822
A+ A +E K V + SW A +++ +PRYS +P+ E++ + + + +++ K
Sbjct: 279 AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEK 336
Score = 51 (23.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 711 QASWTESRPKLEKDPQGRATNADLDSSDREKL---FREHIKTLYER 753
Q +W++++ L +P A + L + D+E F EHI+ L ER
Sbjct: 430 QTTWSQAQQYLMDNPSF-AQDQQLQNMDKEDALICFEEHIRAL-ER 473
Score = 51 (23.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 461 FKEMLKER--GVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507
F+ ML++ + + WE+ + V D F+ I +S R LF +++
Sbjct: 633 FRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQ 681
Score = 49 (22.3 bits), Expect = 3.4e-14, Sum P(3) = 3.4e-14
Identities = 30/131 (22%), Positives = 54/131 (41%)
Query: 732 ADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRV 791
A+ ++REK E + + R A FR +L + + A E+ + S +++
Sbjct: 611 AEARETEREK---EEARRMRRREAA-FRSMLRQAVPALELGTAWEEVRERFVCDSAFEQI 666
Query: 792 LKPEPRYSKMPRKEREALWRRHAEEIQ---RKH--KSSLDQNEDNHKDSKSRSSTDGGRP 846
R ++ R+ + L + + + RKH K + +H S S S + P
Sbjct: 667 TLESERI-RLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHRKRSHSPSGSESDEEE-LP 724
Query: 847 PSSSRRNQERR 857
P S R + RR
Sbjct: 725 PPSLRPPKRRR 735
Score = 45 (20.9 bits), Expect = 8.8e-14, Sum P(3) = 8.8e-14
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 818 QRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
+R+HKS+ +E + +D + S D + R E
Sbjct: 789 KRRHKSTSPDSETDPEDKAGKESEDREQEQDREPRQAE 826
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 50 MPTIPSFSTPPGL---F----VTPQTQAPPGL 74
MP P F PPGL F + P +Q PP +
Sbjct: 2 MP--PPFMPPPGLPPPFPPMGLPPMSQRPPAI 31
Score = 40 (19.1 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 152 PAAYPSPFPLPAHGMPNPSVSQIDAQP 178
P P P P+P +P P ++ ++ +P
Sbjct: 195 PQPQPDPPPIPPGPIPVP-MALLEPEP 220
>WB|WBGene00022853 [details] [associations]
symbol:ZK1127.6 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] GO:GO:0016246 GO:GO:0000003
EMBL:FO081697 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SMART:SM00441 SUPFAM:SSF81698 GeneTree:ENSGT00530000062987
PIR:E88196 RefSeq:NP_495441.1 ProteinModelPortal:Q23398 SMR:Q23398
STRING:Q23398 PaxDb:Q23398 EnsemblMetazoa:ZK1127.6.1
EnsemblMetazoa:ZK1127.6.2 GeneID:174149 KEGG:cel:CELE_ZK1127.6
UCSC:ZK1127.6.1 CTD:174149 WormBase:ZK1127.6 eggNOG:NOG283575
InParanoid:Q23398 OMA:HECKFIT NextBio:882739 Uniprot:Q23398
Length = 424
Score = 146 (56.5 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 528 FKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLXXXXXXXXX 586
F +LL E +++ + Y +F K+G DPR++A++R +DRE N+ V L
Sbjct: 53 FPKLLAEC--ELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKDEKR 110
Query: 587 XXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 641
++F +L E+ +T S+WS K L D+ RY ++ RE +F E+V
Sbjct: 111 AKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSSTRESLFREFV 166
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 39/149 (26%), Positives = 71/149 (47%)
Query: 686 VRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFRE 745
+ L+ R KEA F LL E + ++S++ K KDP+ +A + DRE F +
Sbjct: 40 ILLRKRAKEAKEEFPKLLAECELNGRSSYSSFTSKFGKDPRYKAVERN---RDREDAFND 96
Query: 746 HIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE 805
+ L+++ + R ++ A E + G T + WST K+ L+ E RY +
Sbjct: 97 FVGELHKKEKDEKRAKKEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSS 156
Query: 806 -REALWRRHAEEIQRKHKSSLDQNEDNHK 833
RE+L+R + + S +++ ++ K
Sbjct: 157 TRESLFREFVANLGDETASDIEEEQEREK 185
Score = 116 (45.9 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 44/152 (28%), Positives = 72/152 (47%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNAD-LDSSDREKLFREHI 747
K + E +++ LL++ IK + SW E+R L KD R N D LD + +E LF +HI
Sbjct: 217 KQKMGEHEDTYRNLLIDLIKSTENSWHEARRILRKDE--RYANCDMLDKTRKESLFDDHI 274
Query: 748 KTLYERCAHDFRGLLA--EVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKE 805
K+L + F +L E IT ++ + K + + T ++ R K+ R
Sbjct: 275 KSLERKRREAFFQVLDNHEKITPMMRWRDAK--KIIQDEEETFVKIASNSER--KVERDF 330
Query: 806 REALWRRHAEEIQRKHKSSLDQNED-NHKDSK 836
R+ RRH + + + K L + + HK K
Sbjct: 331 RDWQERRH-DHLTDEFKEMLSETKIITHKSKK 361
Score = 83 (34.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 31/119 (26%), Positives = 47/119 (39%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+F ++L E + S + K DPR+KA++ R F +V
Sbjct: 52 EFPKLLAECELNGRSSYSSFTSKFGKDPRYKAVERNRDREDAFNDFVGELHKKEKDEKRA 111
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKD-RELLLNERVLPL 577
F +LLEE + + + + T KK + R+ ALD RE L E V L
Sbjct: 112 KKEKLKAAFVKLLEEQT-GLTRKSKWSTTKKTLEDEERYIALDSSSTRESLFREFVANL 169
Score = 73 (30.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/134 (20%), Positives = 57/134 (42%)
Query: 688 LKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHI 747
L+ +R+EA FQ L P W +++ ++ + + A E+ FR+
Sbjct: 277 LERKRREAF--FQVLDNHEKITPMMRWRDAKKIIQDEEETFVKIASNSERKVERDFRDWQ 334
Query: 748 KTLYERCAHDFRGLLAEV-ITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER 806
+ ++ +F+ +L+E I + + E+G+ + + K R + M ER
Sbjct: 335 ERRHDHLTDEFKEMLSETKIITHKSKKLMEEGEQHMKDILSVLENDKRWVRMTAMSASER 394
Query: 807 EALWRRHAEEIQRK 820
+ + H E + RK
Sbjct: 395 DRMLEDHIENLGRK 408
Score = 70 (29.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 454 KEECIIKFKEMLKER-GVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 506
KE+ F ++L+E+ G+ SKW + + R+ A+ S S R +LF +V
Sbjct: 113 KEKLKAAFVKLLEEQTGLTRKSKWSTTKKTLEDEERYIALDSSSTRESLFREFV 166
>WB|WBGene00014218 [details] [associations]
symbol:ZK1098.1b species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0018991 "oviposition" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0040010
GO:GO:0002119 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:Z22176
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 OMA:WEKPLEL GeneTree:ENSGT00530000062987 PIR:F88557
PIR:S40923 RefSeq:NP_001255005.1 RefSeq:NP_001255006.1
ProteinModelPortal:P34600 SMR:P34600 PaxDb:P34600 PRIDE:P34600
EnsemblMetazoa:ZK1098.1a GeneID:176343 KEGG:cel:CELE_ZK1098.1
UCSC:ZK1098.1 CTD:176343 WormBase:ZK1098.1a WormBase:ZK1098.1b
HOGENOM:HOG000019151 InParanoid:P34600 NextBio:892164
Uniprot:P34600
Length = 724
Score = 120 (47.3 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 43/169 (25%), Positives = 71/169 (42%)
Query: 149 LPYPAAYPSPFPLPAHGMPNPSVSQIDAQPP--GLSSVRTAAATSHSAIPGHQLVGTSGN 206
LP ++ +P + A + ++Q PP ++ V +HS + H T +
Sbjct: 2 LPNGFSFLNPNLVAAANIQQVLLNQRFGMPPVGSIAQVPLLQMPTHSVVAPHVAAPTRPS 61
Query: 207 TEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266
P G E S SV W+ H + G YY+N VT ++++ KP
Sbjct: 62 PMLVPPGMGIDE------SHSSPSVESD---WSVHTNEKGTPYYHNRVTKQTSWIKP--- 109
Query: 267 KGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315
+ K P++ + S + G W ++DGK YYYN+ K + W P
Sbjct: 110 --DVLKTPLERST-SGQPQQG-QWKEFMSDDGKPYYYNTLTKKTQWVKP 154
Score = 104 (41.7 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 34/192 (17%), Positives = 83/192 (43%)
Query: 460 KFKEMLKER---G-VAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXX 515
+F+E+L+++ G + W++ + I DPRF+ + S ++ LF +
Sbjct: 230 RFRELLRDKYNDGKITTNCNWDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERD 289
Query: 516 XXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVL 575
++ L+E + + S YQ + +P + A++ +DR+ + + +
Sbjct: 290 EKRLAIKKSKEDLEKFLQEHPK-MKESLKYQKASDIFSKEPLWIAVNDEDRKEIFRDCID 348
Query: 576 PLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVRHED 632
+ ++F +L+ IT + W++ + IL ++P++ K + D
Sbjct: 349 FVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMD 408
Query: 633 RE---VIFNEYV 641
+E +F +++
Sbjct: 409 KEDALTVFEDHI 420
Score = 93 (37.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 42/185 (22%), Positives = 74/185 (40%)
Query: 463 EMLKERG-VAPFSKWEKELPKIVFDPRFKAI--QSQSARRALFERYVKTXXXXXXXXXXX 519
E L +RG + S W P I D RF+ + Q S+ LF+ +V+
Sbjct: 454 ESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRL 513
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN---ERVLP 576
K++L E + +T+Y+ F S + +D + +L N E+
Sbjct: 514 --------IKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAES 565
Query: 577 LXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REV 635
S F+++L+E ++ S W+ +K + D Y ++ ++D RE
Sbjct: 566 KAKDEEKESLRRKRRLESEFRNLLKEH-NVDKDSEWTVIKPKIEKDKAYLAMENDDERET 624
Query: 636 IFNEY 640
FN Y
Sbjct: 625 AFNHY 629
Score = 83 (34.3 bits), Expect = 8.0e-09, Sum P(3) = 8.0e-09
Identities = 39/150 (26%), Positives = 58/150 (38%)
Query: 123 LPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLS 182
+PP+G Q PLL+ P V P + P PSP +P P + + + P S
Sbjct: 30 MPPVGSIAQVPLLQMPTHSVVA--PHVAAPTR-PSPMLVP----PGMGIDESHSSPSVES 82
Query: 183 SVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHK 242
+ T+ P + N + K + + R S Q W
Sbjct: 83 D--WSVHTNEKGTPYYH------NRVTKQTSWIKPDVLKTPLER-STSGQPQQGQWKEFM 133
Query: 243 TDTGIVYYYNAVTGESTYEKPAG---FKGE 269
+D G YYYN +T ++ + KP G KGE
Sbjct: 134 SDDGKPYYYNTLTKKTQWVKPDGEEITKGE 163
Score = 76 (31.8 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 36/151 (23%), Positives = 63/151 (41%)
Query: 690 VRRKEAVTS-FQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
+RRK + S F+ LL E D + WT +PK+EKD A D +RE F H K
Sbjct: 575 LRRKRRLESEFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMEND---DERETAFN-HYK 630
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETED-GKTVLNSWSTAKRVLKPEPRYSKMPRKERE 807
+ G +E++ + ++ + K N+ + + + E + K KE
Sbjct: 631 N---GTSGTTAG--SEILEKKKKKKDKKKKNKRSDNNSESEGEIREKEKKKKKKHSKEDR 685
Query: 808 ALWRRHAEEIQRKHKSSLDQNEDNHKDSKSR 838
++ ++ K S ++E S+ R
Sbjct: 686 MDDEERGKKSKKSRKRSPSRSESPRHSSEKR 716
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 32/154 (20%), Positives = 69/154 (44%)
Query: 687 RLKVRR-KEAVTSFQALLVETIKDPQA-SWTESRPKLEKDPQGRATNADLDSSDREKLFR 744
RL +++ KE + F L E K ++ + ++ K+P A N + DR+++FR
Sbjct: 292 RLAIKKSKEDLEKF---LQEHPKMKESLKYQKASDIFSKEPLWIAVNDE----DRKEIFR 344
Query: 745 EHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRK 804
+ I + R I A + ++ + T +W+ A+R+L P++++ RK
Sbjct: 345 DCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAE--RK 402
Query: 805 EREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSR 838
+ + + A + H ++ D K+ + +
Sbjct: 403 DLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEK 436
Score = 71 (30.1 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 505
+F+ +LKE V S+W PKI D + A+++ R F Y
Sbjct: 584 EFRNLLKEHNVDKDSEWTVIKPKIEKDKAYLAMENDDERETAFNHY 629
Score = 58 (25.5 bits), Expect = 7.8e-11, Sum P(3) = 7.8e-11
Identities = 24/86 (27%), Positives = 34/86 (39%)
Query: 775 TEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKD 834
T G +L K K R E E R E+ ++K S D+ +D +
Sbjct: 636 TTAGSEILEKKKKKKDKKKKNKRSDNNSESEGEI---REKEKKKKKKHSKEDRMDDEERG 692
Query: 835 SKSRSSTDGGRPPSSS---RRNQERR 857
KS+ S R PS S R + E+R
Sbjct: 693 KKSKKSRK--RSPSRSESPRHSSEKR 716
Score = 40 (19.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 788 AKRVLKPEPRYSKMPRKEREALWRRHAE 815
+K+ K P S+ PR E RR +E
Sbjct: 695 SKKSRKRSPSRSESPRHSSEKRKRRESE 722
>DICTYBASE|DDB_G0283543 [details] [associations]
symbol:prp40 "FF domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0005685 "U1 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS50020
SMART:SM00456 dictyBase:DDB_G0283543 GenomeReviews:CM000153_GR
EMBL:AAFI02000055 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0000398
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 InterPro:IPR027237
PANTHER:PTHR11864:SF0 eggNOG:COG5104 RefSeq:XP_639002.1
ProteinModelPortal:Q54QY2 EnsemblProtists:DDB0233540 GeneID:8624132
KEGG:ddi:DDB_G0283543 InParanoid:Q54QY2 OMA:ERRIKQK Uniprot:Q54QY2
Length = 681
Score = 144 (55.7 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 41/189 (21%), Positives = 82/189 (43%)
Query: 454 KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXX 513
KE+ I FK +L + ++ +EK L I D R++ +++ S R+ +F Y
Sbjct: 177 KEDPIQTFKNLLTDNSISSICTFEKALKSIANDERYQVLKTMSERKQVFLDYQVDRKKVE 236
Query: 514 XXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNE 572
F QLL + S+++ ++ + S+PR+EA++ ++RE LL++
Sbjct: 237 QEEKRKKEKKAKEDFIQLLRD-SKEVTPLMSWRRASLYFESEPRWEAIESERERESLLHD 295
Query: 573 RVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED 632
+ L + L IT+ ++W KV+D +D ++ + D
Sbjct: 296 HIQELEQQEKNQLMSIKKEQMKILRQKLELDPSITVFTQWRKVRDQFENDDVFQVLDKFD 355
Query: 633 REVIFNEYV 641
+F ++
Sbjct: 356 FLTVFENFI 364
Score = 96 (38.9 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 26/80 (32%), Positives = 34/80 (42%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W D G +YY+ VT S +E P K P + + G DW T+
Sbjct: 5 WVEAIAD-GKKFYYHKVTRVSVWEIPEDLKS-PAPSSNDSNSNNQPVIIG-DWKEYKTDK 61
Query: 298 GKKYYYNSKMKVSSWQIPSE 317
G+KYYYN+ V W P E
Sbjct: 62 GQKYYYNTISGVRQWDAPPE 81
Score = 80 (33.2 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 738 DREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPR 797
DR+K+ +E + ++ DF LL + ++E T L SW A + EPR
Sbjct: 231 DRKKVEQEEKRKKEKKAKEDFIQLLRD-------SKEV----TPLMSWRRASLYFESEPR 279
Query: 798 YSKMP-RKEREALWRRHAEEIQRKHKSSL 825
+ + +ERE+L H +E++++ K+ L
Sbjct: 280 WEAIESERERESLLHDHIQELEQQEKNQL 308
Score = 77 (32.2 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
+DW DGKK+YY+ +VS W+IP ++
Sbjct: 3 SDWVEAIA-DGKKFYYHKVTRVSVWEIPEDL 32
Score = 77 (32.2 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTT 295
W +KTD G YYYN ++G ++ P F+ + T S L+ + +TT
Sbjct: 54 WKEYKTDKGQKYYYNTISGVRQWDAPPEFQQKLASTTTS-TSTSSPQLSSSGSTTITT 110
Score = 76 (31.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 28/149 (18%), Positives = 64/149 (42%)
Query: 691 RRKEAVTSFQALLVETIK-DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKT 749
+ K+A F LL ++ + P SW + E +P+ A ++ +RE L +HI+
Sbjct: 243 KEKKAKEDFIQLLRDSKEVTPLMSWRRASLYFESEPRWEAIESE---RERESLLHDHIQE 299
Query: 750 LYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREAL 809
L ++ + + E + E + TV W + + + + + + + +
Sbjct: 300 LEQQEKNQLMSIKKEQMKILRQKLELDPSITVFTQWRKVRDQFENDDVFQVLDKFDFLTV 359
Query: 810 WRRHAEEIQRK--HKSSLDQNEDNHKDSK 836
+ ++++K + L++ E KDS+
Sbjct: 360 FENFIRDLEKKLDDQKRLEK-EKLKKDSR 387
Score = 38 (18.4 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 819 RKHKSSLDQNEDNHK---DSKSRSSTDGGRPPSSS 850
+K +S +D +D + S S S + GG SSS
Sbjct: 608 KKRRSYIDNLDDEDRYGTGSGSGSGSGGGSGGSSS 642
>UNIPROTKB|G4MWS5 [details] [associations]
symbol:MGG_08329 "DNA replication protein 4" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:CM001232 Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846
SUPFAM:SSF81698 RefSeq:XP_003715736.1 ProteinModelPortal:G4MWS5
EnsemblFungi:MGG_08329T0 GeneID:2678469 KEGG:mgr:MGG_08329
Uniprot:G4MWS5
Length = 567
Score = 112 (44.5 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 22/42 (52%), Positives = 26/42 (61%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
WT HK TG YY+NA TGESTY++PA P +P Q P
Sbjct: 23 WTEHKAPTGHTYYHNAATGESTYKRPAAAGVFP--IPPQQAP 62
Score = 82 (33.9 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 687 RLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
R + +K+ + A L E +P+ W E + K +K+ G +A + DREK +REH
Sbjct: 359 RAREEKKDPRIPYLAFLHEKA-NPKLYWPEFKRKYKKE--GPMRDAGISDKDREKWYREH 415
Query: 747 IKTL 750
I L
Sbjct: 416 INRL 419
Score = 79 (32.9 bits), Expect = 2.8e-10, Sum P(3) = 2.8e-10
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 461 FKEMLKERGVAPFSKWEK--ELPKIVFDPRFKAIQSQSARRALFERY 505
FK+ML + + P+S W+K E K+ DPR+ + + R+ +E +
Sbjct: 301 FKDMLNDFNINPYSSWDKLIEEGKVFDDPRYTVLTTMKDRKDTWEEW 347
Score = 78 (32.5 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 265 GFKGEPDKVPVQPT--PISMEHLTGTD-WALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
G G + P QP P S + G + W LV T G+++ YN + S W+IP +
Sbjct: 104 GGAGGERRPPPQPNDKPKSKVAIPGCEPWILVYTKYGRRFAYNPEKNASYWRIPDRL 160
Score = 46 (21.3 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 26/89 (29%), Positives = 38/89 (42%)
Query: 734 LDSSDREKLFREHIKTLY---ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKR 790
LD+ R++L +I+TL E HD G AE EAA + E + +R
Sbjct: 464 LDAKTRDELVEGYIQTLPPPPEDGEHD-GG--AE---DEAATKAKEARLKREKAMQDRER 517
Query: 791 VLKPEPRYSKMPRKEREALWRRHAEEIQR 819
VL E R + +A R E++R
Sbjct: 518 VLAEEKRRKERDLARSKAALREQERELER 546
>ASPGD|ASPL0000052549 [details] [associations]
symbol:AN1249 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 EMBL:BN001308
EMBL:AACD01000017 Gene3D:2.20.70.10 SUPFAM:SSF51045
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 OMA:WEKPLEL OrthoDB:EOG41VPBS RefSeq:XP_658853.1
ProteinModelPortal:Q5BDY0 EnsemblFungi:CADANIAT00001374
GeneID:2877027 KEGG:ani:AN1249.2 HOGENOM:HOG000207896
Uniprot:Q5BDY0
Length = 798
Score = 130 (50.8 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 39/180 (21%), Positives = 74/180 (41%)
Query: 455 EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXX 514
EE F +MLK V P WE+ + + + DP+++A++ R+ FE+Y
Sbjct: 160 EEAEAAFMKMLKRHNVQPDWTWEQTMRETIKDPQYRALKDPRDRKIAFEKYAVEVRSQEK 219
Query: 515 XXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEAL-DRKDRELLLNER 573
F +L+ E I H T ++T + + F + D +R L E
Sbjct: 220 DRAKERFAKLRADFNTMLKRHPE-IKHYTRWKTIRPIIEGETIFRSTNDENERRQLFEEY 278
Query: 574 VLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDR 633
+L L +L+ ++ +RWS+ + I++ + R V++E++
Sbjct: 279 ILELKKEHAEKEAAARRAAMDELVGILKSM-NLEPYTRWSEAQAIIQSNER---VQNEEK 334
Score = 100 (40.3 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 24/78 (30%), Positives = 34/78 (43%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W +T G YYYN T + + KP TP+ L W T
Sbjct: 14 WQEARTPEGRAYYYNVQTKATQWTKPVELM----------TPVERA-LANQPWKEYTAEG 62
Query: 298 GKKYYYNSKMKVSSWQIP 315
G+KY+ NS+ K S+W++P
Sbjct: 63 GRKYWSNSETKESTWEMP 80
Score = 84 (34.6 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 600 LREKGDITLSSRWSKVKDILRDDPRYKSV 628
LR KG I S+WSK+ I+R+DPRY +
Sbjct: 387 LRSKGVIKAGSKWSKIYPIIREDPRYLGI 415
Score = 78 (32.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 31/134 (23%), Positives = 56/134 (41%)
Query: 693 KEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLY- 751
+EA +F +L P +W ++ + KDPQ RA D DR+ F ++ +
Sbjct: 160 EEAEAAFMKMLKRHNVQPDWTWEQTMRETIKDPQYRALK---DPRDRKIAFEKYAVEVRS 216
Query: 752 ---ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY-SKMPRKERE 807
+R F L A+ T E + W T + +++ E + S ER
Sbjct: 217 QEKDRAKERFAKLRADFNTMLKRHPEIKH----YTRWKTIRPIIEGETIFRSTNDENERR 272
Query: 808 ALWRRHAEEIQRKH 821
L+ + E++++H
Sbjct: 273 QLFEEYILELKKEH 286
Score = 67 (28.6 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
W T +G+ YYYN + K + W P E+
Sbjct: 14 WQEARTPEGRAYYYNVQTKATQWTKPVEL 42
Score = 63 (27.2 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPV-QPTP 279
W + + G Y+ N+ T EST+E P +K + QP P
Sbjct: 55 WKEYTAEGGRKYWSNSETKESTWEMPEAYKNALAQAQAAQPPP 97
Score = 47 (21.6 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 28/111 (25%), Positives = 42/111 (37%)
Query: 745 EHIKTLYERCAHD-FRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPR---YSK 800
+H ++R A D R L + + + K L + K + E R + K
Sbjct: 502 KHAADRHQRRAIDALRSRLKRLEPPLRSTDTWDQVKPTLERYDEYKALESDELRQIAFDK 561
Query: 801 MPR--KEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSS 849
+ R KE+E R E R S D + D +D RS R P+S
Sbjct: 562 VIRRLKEKEEDAERDRER-DRDRGSRRDHHHDRDRDRDYRSYRGERRGPAS 611
Score = 42 (19.8 bits), Expect = 9.9e-10, Sum P(3) = 9.9e-10
Identities = 36/173 (20%), Positives = 66/173 (38%)
Query: 692 RKEAVTSFQALLVETIKDPQAS---WTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
++ A+ + ++ L + ++ P S W + +P LE+ + +A +D R+ F + I+
Sbjct: 509 QRRAIDALRSRL-KRLEPPLRSTDTWDQVKPTLERYDEYKALESD---ELRQIAFDKVIR 564
Query: 749 TLYERCAHDFRGLLAEVITAEAAAQETE-DGKTVLNSWSTAKRVLKPEPRYSKMPRKERE 807
L E+ R + + D S+ +R P R+S+ P +
Sbjct: 565 RLKEKEEDAERDRERDRDRGSRRDHHHDRDRDRDYRSYRGERR--GPASRHSRTPEPDAY 622
Query: 808 ALWRRHA----EEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQER 856
RR A E RK S L + + D R R++ER
Sbjct: 623 EADRRKAQADRERSYRKAASGLSPVRERWDERDRDRERDRDRRDRDRDRDRER 675
>UNIPROTKB|H0YG38 [details] [associations]
symbol:PRPF40A "Pre-mRNA-processing factor 40 homolog A"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
GO:GO:0005634 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AC079344
EMBL:AC012443 HGNC:HGNC:16463 ChiTaRS:PRPF40A
Ensembl:ENST00000493468 Bgee:H0YG38 Uniprot:H0YG38
Length = 346
Score = 168 (64.2 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 59/196 (30%), Positives = 80/196 (40%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLP---YPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSV 184
VS G L R P MG P + + P +P + P HGM + + P G
Sbjct: 37 VSADGFLRRRPSMG-HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMG---- 91
Query: 185 RTAAATSHSAIPGHQLVGTSGNTEAP--PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHK 242
S +PG + S + P P G + + +S GA WT HK
Sbjct: 92 -QMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTAS--GAK-----SMWTEHK 143
Query: 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYY 302
+ G YYYN T +ST+EKP K TP + L+ W ++ GK YY
Sbjct: 144 SPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDSGKPYY 192
Query: 303 YNSKMKVSSWQIPSEV 318
YNS+ K S W P E+
Sbjct: 193 YNSQTKESRWAKPKEL 208
>CGD|CAL0003333 [details] [associations]
symbol:orf19.3250 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
SMART:SM00456 CGD:CAL0003333 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:AACQ01000049 EMBL:AACQ01000048 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0 eggNOG:COG5104
RefSeq:XP_717875.1 RefSeq:XP_717941.1 ProteinModelPortal:Q5A878
STRING:Q5A878 GeneID:3640384 GeneID:3640462 KEGG:cal:CaO19.10760
KEGG:cal:CaO19.3250 Uniprot:Q5A878
Length = 602
Score = 141 (54.7 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W +T+TG VYYYN T E+++ P + P V + I+ TG W TT+D
Sbjct: 5 WEELRTETGEVYYYNYKTNETSWTFPETEETLP--VSEKQETITTSTTTGK-WEEYTTDD 61
Query: 298 GKKYYYNSKMKVSSWQIPSEV 318
GKKYYYN+ ++W+ P+E+
Sbjct: 62 GKKYYYNAITGETTWEKPNEI 82
Score = 80 (33.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 41/230 (17%), Positives = 79/230 (34%)
Query: 406 ESNGSKAVEVTVKGLQNENTKDKLKDINXXXXXXXXXXXXXXXXXXPTKEECIIKFKEML 465
E+ K E+ + L NE +K +++ T E F ++L
Sbjct: 73 ETTWEKPNEIIEEELSNEKLAEKT-ELSELDKTLKSKPVELTGPTSKTDNEAKQSFLKLL 131
Query: 466 KERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXXXXXXX 525
+ V ++ + +V P + +++ R+ L+E Y+ +
Sbjct: 132 SDNKVNSTWSFQAVMENLVDKPEYWSVKDPVTRKQLYEEYLVSKFQSELSNKSLLLENFK 191
Query: 526 XGFKQLLE--EVSEDIDHSTDYQTFKKKW--GSDPRFEALDRKDREL--LLNERVLPLXX 579
F + L E + ++T + T KK W +P F+ D EL + E L
Sbjct: 192 RNFNEELRKLEAKNLVTYNTRWITIKKLWIDQDNPIFKHSMMSDSELAAIFYEYTDKLRE 251
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGD--ITLSSRWSKVKDILRDDPRYKS 627
+ LR+ + S W + + L +D R++S
Sbjct: 252 QHEKLLQTKKNQALIELSTYLRQVNSSLVEKSQTWESLYENLINDSRFQS 301
>FB|FBgn0031492 [details] [associations]
symbol:CG3542 species:7227 "Drosophila melanogaster"
[GO:0017058 "FH1 domain binding" evidence=ISS] [GO:0005685 "U1
snRNP" evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 EMBL:AE014134 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0071011 GO:GO:0000398 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
GO:GO:0005685 KO:K12821 OMA:SHERPSQ InterPro:IPR027237
PANTHER:PTHR11864:SF0 HSSP:Q61051 GeneTree:ENSGT00530000062987
UniGene:Dm.4165 GeneID:33513 KEGG:dme:Dmel_CG3542
FlyBase:FBgn0031492 GenomeRNAi:33513 NextBio:783971 EMBL:AY058551
RefSeq:NP_608738.1 SMR:Q9VQK5 IntAct:Q9VQK5 STRING:Q9VQK5
EnsemblMetazoa:FBtr0077648 UCSC:CG3542-RA InParanoid:Q9VQK5
Uniprot:Q9VQK5
Length = 806
Score = 112 (44.5 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 27/80 (33%), Positives = 36/80 (45%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
WT HK G YYYN T +S++EKP TP + H W ++
Sbjct: 56 WTEHKAPDGRPYYYNQNTKQSSWEKPEALM----------TPAELLH-NQCPWKEYRSDT 104
Query: 298 GKKYYYNSKMKVSSWQIPSE 317
GK YY+N K + W+ P E
Sbjct: 105 GKVYYHNVATKETCWEPPPE 124
Score = 110 (43.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 37/194 (19%), Positives = 75/194 (38%)
Query: 454 KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXX 513
K E I FKE+L++R V + W++ + I DPR+ A ++ + R+ F Y
Sbjct: 229 KREAIESFKELLRDRNVPSNANWDQCVKIISKDPRYAAFKNLNERKQTFNAYKTQKIKDE 288
Query: 514 XXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNER 573
+Q L S+ ++ Y ++ + + A+ DR + +
Sbjct: 289 REESRLKAKKAKEDLEQFLMS-SDKMNSQMKYFRCEEVFAGTRTWTAVPEPDRRDIYEDC 347
Query: 574 VLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKS------ 627
+ L +L I ++ WS+ + +L D+ +K+
Sbjct: 348 IFNLAKREKEEARLLKKRNMKVLGELLESMTSINHATTWSEAQVMLLDNVAFKNDVTLLG 407
Query: 628 VRHEDREVIFNEYV 641
+ ED ++F E++
Sbjct: 408 MDKEDALIVFEEHI 421
Score = 88 (36.0 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/127 (29%), Positives = 55/127 (43%)
Query: 137 PPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIP 196
PP G+ + P P A FP P G P P ++ A G+ + T T H A
Sbjct: 13 PPGRGIG----YTP-PGAIVPQFPPPGFGAPPPP--EL-AAAFGVMATSTEW-TEHKAPD 63
Query: 197 GHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTG 256
G NT+ S +K E + + + + Q W +++DTG VYY+N T
Sbjct: 64 GRPYYYNQ-NTKQ--SSWEKPEALMTPAELL----HNQCP-WKEYRSDTGKVYYHNVATK 115
Query: 257 ESTYEKP 263
E+ +E P
Sbjct: 116 ETCWEPP 122
Score = 82 (33.9 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 19/53 (35%), Positives = 23/53 (43%)
Query: 263 PAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315
P GF P P + T T+W DG+ YYYN K SSW+ P
Sbjct: 32 PPGFGAPP---PPELAAAFGVMATSTEWTEHKAPDGRPYYYNQNTKQSSWEKP 81
>POMBASE|SPAC4D7.13 [details] [associations]
symbol:usp104 "U1 snRNP-associated protein Usp104"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IPI] InterPro:IPR001202 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 PomBase:SPAC4D7.13 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000243 Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 GO:GO:0005685
GO:GO:0000395 KO:K12821 InterPro:IPR027237 PANTHER:PTHR11864:SF0
eggNOG:COG5104 PIR:T38804 RefSeq:NP_594966.1
ProteinModelPortal:O14176 STRING:O14176 EnsemblFungi:SPAC4D7.13.1
GeneID:2543409 KEGG:spo:SPAC4D7.13 OMA:FRELEVW OrthoDB:EOG41VPBS
NextBio:20804424 Uniprot:O14176
Length = 695
Score = 128 (50.1 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 37/113 (32%), Positives = 50/113 (44%)
Query: 209 APPSGTDKKEHVHD-VSSRIGASVNEQLDA---WTAHKTDTGIVYYYNAVTGESTYEKPA 264
APP T + + S++ G S W KT+ VYYYN+VT +S +EKP
Sbjct: 3 APPWQTSEYDETEGFTSNQEGPSAAPSKTVASDWHEVKTEDSRVYYYNSVTRKSVWEKPE 62
Query: 265 GFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
+ +K L+ W T DGKKY+YN + S W IP E
Sbjct: 63 ELMNDFEK-----------KLSKLAWKEYATADGKKYWYNVNTRESVWDIPDE 104
Score = 88 (36.0 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 34/122 (27%), Positives = 52/122 (42%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ-GRATNAD-LDSSDREKLFREH 746
K RRKEA+ F +LL +P W+ ++ K ++DP+ R +N L D F +H
Sbjct: 323 KDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDH 382
Query: 747 IKTLYERCAHDFRGLLAEVITAE--------AAAQETEDGK--TVLNSWSTAKRVLKPEP 796
+K L D + E E A Q+ K T+ W ++K +P
Sbjct: 383 VKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWKELYPIIKDDP 442
Query: 797 RY 798
RY
Sbjct: 443 RY 444
Score = 86 (35.3 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 258 STYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
S Y++ GF + P+ +DW V T D + YYYNS + S W+ P E
Sbjct: 9 SEYDETEGFTSNQEGPSAAPSKT-----VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEE 63
Query: 318 V 318
+
Sbjct: 64 L 64
Score = 85 (35.0 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 34/166 (20%), Positives = 61/166 (36%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXX 520
F + L V P WE+ + ++ + ++ R+ F+ Y+
Sbjct: 198 FFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNR 257
Query: 521 XXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRK-DRELLLNERVLPLXX 579
F ++L+ S+ I T ++T K ++ S P F A + +++ L E L
Sbjct: 258 VTKIRKEFIEMLKS-SDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKLLE 316
Query: 580 XXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY 625
F S+LR + +RWS + DPRY
Sbjct: 317 DEKQLEKDRRKEALDDFCSLLRNM-NFEPYTRWSVAQAKFDQDPRY 361
Score = 69 (29.3 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 600 LREKGDITLSSRWSKVKDILRDDPRY 625
LR + ITL ++W ++ I++DDPRY
Sbjct: 419 LRVQKKITLRTKWKELYPIIKDDPRY 444
Score = 60 (26.2 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 37/173 (21%), Positives = 70/173 (40%)
Query: 693 KEAVTSFQALLVETIK--DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTL 750
K VT + +E +K D S+T R + A NA +++++LF E+ + L
Sbjct: 255 KNRVTKIRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKL 314
Query: 751 YERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR----KER 806
E + E + + + + WS A+ +PRY++ +
Sbjct: 315 LEDEKQLEKDRRKEALDDFCSLLRNMNFEPYTR-WSVAQAKFDQDPRYTRNSNMKYLSKL 373
Query: 807 EAL--WRRHAEEIQRKHKSSLD-QNEDNHKDSKSRSSTDGGRPPSSSRRNQER 856
+AL + H + ++R++ LD Q + K R + D R R Q++
Sbjct: 374 DALVAFEDHVKHLEREY--ILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKK 424
Score = 55 (24.4 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 474 SKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507
+ +++ P I P F A+ S+ R A F++Y++
Sbjct: 567 ASYDEIRPLISILPEFAALHSEEHRMAAFDKYIR 600
Score = 52 (23.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 454 KEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRF 489
++E + F +L+ P+++W K DPR+
Sbjct: 326 RKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQDPRY 361
Score = 47 (21.6 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 596 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHE-DREVIFNEY 640
F ML+ I + W VK+ P + + E +++ +F EY
Sbjct: 265 FIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEY 310
Score = 45 (20.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 474 SKWEKELPKIVFDPRFKAIQSQSARRAL 501
+KW++ P I DPR+ + QS L
Sbjct: 429 TKWKELYPIIKDDPRYLNLLGQSGSTPL 456
>ZFIN|ZDB-GENE-050522-342 [details] [associations]
symbol:zgc:112384 "zgc:112384" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000690 InterPro:IPR001202 InterPro:IPR003604
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451 SMART:SM00456
ZFIN:ZDB-GENE-050522-342 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 HOVERGEN:HBG053152
KO:K13220 EMBL:BC095798 IPI:IPI00483634 RefSeq:NP_001018530.1
UniGene:Dr.78282 ProteinModelPortal:Q501Z8 GeneID:553723
KEGG:dre:553723 InParanoid:Q501Z8 NextBio:20880452 Uniprot:Q501Z8
Length = 412
Score = 166 (63.5 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 40/122 (32%), Positives = 56/122 (45%)
Query: 197 GHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTG 256
G + EAP KK V R S + + AW + T G++YYYN +T
Sbjct: 89 GESVCSAKAPAEAPVR-KQKKLKPSAVKPRSDPSSSSRTQAWVSGTTADGLLYYYNTLTA 147
Query: 257 ESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316
ES +EKP GF E T + +G+ W + DG YYYN++ SSW+ P
Sbjct: 148 ESQWEKPDGFVDECVSSTAGQT---QQESSGSAWMEAVSPDGFTYYYNTESGESSWEKPE 204
Query: 317 EV 318
E+
Sbjct: 205 EL 206
Score = 37 (18.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 11/67 (16%), Positives = 26/67 (38%)
Query: 472 PFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXXXXXXXXXGFKQL 531
P+ + +LP++ + A Q++ R+ ER + + G +
Sbjct: 345 PYESVDLQLPQVEVCVQSPAAAPQTSPRSFKERSISSLGADSSAGASFRKRKTENGKPRS 404
Query: 532 LEEVSED 538
L + ++D
Sbjct: 405 LRQRAQD 411
>POMBASE|SPAC13C5.02 [details] [associations]
symbol:dre4 "splicing associated factor Dre4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006260 "DNA
replication" evidence=IEA] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 PomBase:SPAC13C5.02
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0006260 Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AY227798
PIR:S58094 RefSeq:NP_592930.1 ProteinModelPortal:Q09685
IntAct:Q09685 STRING:Q09685 EnsemblFungi:SPAC13C5.02.1
GeneID:2542176 KEGG:spo:SPAC13C5.02 eggNOG:NOG307751 OMA:KLYWPEF
OrthoDB:EOG4XH37P NextBio:20803247 Gene3D:1.10.10.440
InterPro:IPR002713 Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698
Uniprot:Q09685
Length = 411
Score = 99 (39.9 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT 508
F E+LK++ + + WE PK++ D RF + S R+ +FE Y K+
Sbjct: 246 FTELLKDKNIGAYQPWELVYPKLLDDDRFYVLDSGERRKEVFEEYCKS 293
Score = 86 (35.3 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPA 264
WT HK +GI YY+NA +STY++P+
Sbjct: 9 WTEHKAPSGIPYYWNAELKKSTYQRPS 35
Score = 56 (24.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
W +V T + +++N K S W+ P E+
Sbjct: 95 WVVVFTKKNRYFFHNLKSHESYWEPPLEI 123
>SGD|S000001495 [details] [associations]
symbol:PRP40 "U1 snRNP protein involved in splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IMP] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] InterPro:IPR001202
Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456
SGD:S000001495 EMBL:BK006944 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0000398 EMBL:S53418 GO:GO:0071004
Gene3D:1.10.10.440 InterPro:IPR002713 Pfam:PF01846 SMART:SM00441
SUPFAM:SSF81698 GO:GO:0005685 KO:K12821 eggNOG:COG5104
GeneTree:ENSGT00530000062987 OrthoDB:EOG41VPBS EMBL:Z28012
PIR:S30014 RefSeq:NP_012913.3 RefSeq:NP_012915.3 PDB:1O6W PDB:2B7E
PDB:2KFD PDBsum:1O6W PDBsum:2B7E PDBsum:2KFD
ProteinModelPortal:P33203 SMR:P33203 DIP:DIP-1620N IntAct:P33203
MINT:MINT-386201 STRING:P33203 PaxDb:P33203 EnsemblFungi:YKL012W
GeneID:853857 GeneID:853859 KEGG:sce:YKL010C KEGG:sce:YKL012W
CYGD:YKL012w HOGENOM:HOG000001088 KO:K10590 OMA:DDDPLWK
EvolutionaryTrace:P33203 NextBio:975100 Genevestigator:P33203
GermOnline:YKL012W Uniprot:P33203
Length = 583
Score = 121 (47.7 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 235 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVT 294
+ W K +G +YYYN +T +ST+EKP + + + L W
Sbjct: 1 MSIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELL-----------LRENGWKAAK 49
Query: 295 TNDGKKYYYNSKMKVSSWQIPS 316
T DGK YYYN + +SW IP+
Sbjct: 50 TADGKVYYYNPTTRETSWTIPA 71
Score = 81 (33.6 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 41/203 (20%), Positives = 77/203 (37%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKI-VFDPRFKAIQSQSA-RRALFERYVKTXX 510
TKEE +F MLKE V + + + ++ DPR+ + ++ +FE+Y+
Sbjct: 131 TKEEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNRS 190
Query: 511 XXXXXXXXXXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFE--ALDRKDREL 568
F+++L+ S I + T + T K+ +P ++ ++ K +
Sbjct: 191 ADQLLKEHNETSKFKEAFQKMLQNNSH-IKYYTRWPTAKRLIADEPIYKHSVVNEKTKRQ 249
Query: 569 LLNERVLPLXXXXXXXXXXXXXXXXSSFKSMLREKGDITLSSR-----WSKVKD--ILRD 621
+ + L + L G IT SS W ++ + +
Sbjct: 250 TFQDYIDTLIDTQKESKKKLKTQALKELREYLN--GIITTSSSETFITWQQLLNHYVFDK 307
Query: 622 DPRYKSVRHED---REVIFNEYV 641
RY + RH E + NEY+
Sbjct: 308 SKRYMANRHFKVLTHEDVLNEYL 330
Score = 63 (27.2 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 595 SFKSMLREKG-DITLSSRWSKVKDILRDDPRY 625
+FKS+LRE I ++RWS + ++ DPR+
Sbjct: 361 NFKSLLREVPIKIKANTRWSDIYPHIKSDPRF 392
Score = 60 (26.2 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 24/113 (21%), Positives = 45/113 (39%)
Query: 461 FKEMLKERGVA--PFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXX 518
FK +L+E + ++W P I DPRF + ++ L + ++
Sbjct: 362 FKSLLREVPIKIKANTRWSDIYPHIKSDPRFLHMLGRNGSSCL-DLFLDFVDEQRMYIFA 420
Query: 519 XXXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLN 571
Q E D D T Q +K +D +F+ +D++D L+++
Sbjct: 421 QRSIAQQTLIDQNFEWNDADSDEITK-QNIEKVLENDRKFDKVDKEDISLIVD 472
Score = 59 (25.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 37/148 (25%), Positives = 63/148 (42%)
Query: 688 LKVRRK---EAVTSFQALLVETIKDPQASWTESRPKLE---KDPQGRATNADLDSSDREK 741
L VRR+ EA F +L E D ++W+ SR E +DP R D D +++
Sbjct: 125 LNVRRRTKEEAEKEFITMLKENQVD--STWSFSRIISELGTRDP--RYWMVDDDPLWKKE 180
Query: 742 LFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLN---SWSTAKRVLKPEPRY 798
+F +++ R A E + A Q+ + + W TAKR++ EP Y
Sbjct: 181 MFEKYLSN---RSADQLLKEHNETSKFKEAFQKMLQNNSHIKYYTRWPTAKRLIADEPIY 237
Query: 799 --SKMPRKEREALWRRHAEEIQRKHKSS 824
S + K + ++ + + + K S
Sbjct: 238 KHSVVNEKTKRQTFQDYIDTLIDTQKES 265
Score = 40 (19.1 bits), Expect = 3.5e-07, Sum P(3) = 3.5e-07
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 721 LEKDPQGRATNADLDSSDREKLFREHIKTL 750
+E D Q + L + R+++ R++ K+L
Sbjct: 336 IENDLQNKLNELRLRNYTRDRIARDNFKSL 365
>MGI|MGI:2179723 [details] [associations]
symbol:Casc3 "cancer susceptibility candidate 3"
species:10090 "Mus musculus" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0031625 "ubiquitin protein ligase
binding" evidence=ISO] [GO:0035145 "exon-exon junction complex"
evidence=ISO] [GO:0042802 "identical protein binding" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] MGI:MGI:2179723
GO:GO:0005634 GO:GO:0005737 GO:GO:0048471 GO:GO:0006417
GO:GO:0006950 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 EMBL:CH466556 GO:GO:0042802
GO:GO:0030529 GO:GO:0008298 GO:GO:0051028 CTD:22794
eggNOG:NOG318950 GeneTree:ENSGT00390000006930 HOGENOM:HOG000069997
KO:K14323 OMA:HRHQGPG OrthoDB:EOG4P5K9B GO:GO:0035145
InterPro:IPR018545 Pfam:PF09405 SMART:SM01044 HOVERGEN:HBG050799
ChiTaRS:CASC3 EMBL:AF526276 EMBL:AJ292072 EMBL:AK139608
EMBL:AL590963 EMBL:BC034533 EMBL:BC060672 EMBL:BC141296
IPI:IPI00877339 RefSeq:NP_619601.2 UniGene:Mm.40120
ProteinModelPortal:Q8K3W3 SMR:Q8K3W3 STRING:Q8K3W3
PhosphoSite:Q8K3W3 PRIDE:Q8K3W3 Ensembl:ENSMUST00000017384
Ensembl:ENSMUST00000169695 GeneID:192160 KEGG:mmu:192160
UCSC:uc007lhq.1 InParanoid:A3KFP7 NextBio:371147 Bgee:Q8K3W3
CleanEx:MM_CASC3 Genevestigator:Q8K3W3
GermOnline:ENSMUSG00000052915 Uniprot:Q8K3W3
Length = 698
Score = 147 (56.8 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 72/240 (30%), Positives = 90/240 (37%)
Query: 49 WMPTIPSFSTPPGLFVTPQ-----TQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 103
W P+ PSF P L P PP + S YSS RP VP P
Sbjct: 471 WSPSQPSFLQPRELRGVPNHIHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRP-VPEPP 529
Query: 104 APSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQ-MGVRPWLPFLPYPAAYP--SPFP 160
AP S ++ Y PI P PPQ M V+P + LP+P +P SP P
Sbjct: 530 APPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEM-HLPHPGLHPHQSPGP 588
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS-GTDKKEH 219
LP G+ P VS QPP + A T SA PG G AP + H
Sbjct: 589 LPNPGLYPPPVSMSPGQPP---PQQLLAPTYFSA-PGVMNFGNPNYPYAPGALPPPPPPH 644
Query: 220 VHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
++ N Q A G V YYN + KP+ + P V ++P P
Sbjct: 645 LYP---------NTQ-----APPQVYGGVTYYNPAQ-QQVQPKPSPPRRTPQPVSIKPPP 689
>RGD|628766 [details] [associations]
symbol:Casc3 "cancer susceptibility candidate 3" species:10116
"Rattus norvegicus" [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0008298 "intracellular mRNA localization" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0019899 "enzyme binding" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA;ISO]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO]
[GO:0035145 "exon-exon junction complex" evidence=IEA;ISO]
[GO:0042802 "identical protein binding" evidence=IEA;ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] RGD:628766 GO:GO:0048471 GO:GO:0006417 GO:GO:0006950
GO:GO:0000184 GO:GO:0008380 GO:GO:0016607 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0008298 GO:GO:0051028 CTD:22794
eggNOG:NOG318950 HOGENOM:HOG000069997 KO:K14323 OrthoDB:EOG4P5K9B
GO:GO:0035145 InterPro:IPR018545 Pfam:PF09405 SMART:SM01044
HOVERGEN:HBG050799 EMBL:AF525467 IPI:IPI00202691 RefSeq:NP_671485.1
UniGene:Rn.162194 ProteinModelPortal:Q8K3X0 SMR:Q8K3X0
STRING:Q8K3X0 PhosphoSite:Q8K3X0 PRIDE:Q8K3X0 GeneID:259170
KEGG:rno:259170 UCSC:RGD:628766 InParanoid:Q8K3X0 NextBio:624218
Genevestigator:Q8K3X0 GermOnline:ENSRNOG00000009716 Uniprot:Q8K3X0
Length = 699
Score = 145 (56.1 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 72/240 (30%), Positives = 89/240 (37%)
Query: 49 WMPTIPSFSTPPGLFVTPQ-----TQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 103
W P PSF P L P PP + S YSS RP VP P
Sbjct: 472 WSPGQPSFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRP-VPEPP 530
Query: 104 APSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQ-MGVRPWLPFLPYPAAYP--SPFP 160
AP S ++ Y PI P PPQ M V+P + LP+P +P SP P
Sbjct: 531 APPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEM-HLPHPGLHPHQSPAP 589
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS-GTDKKEH 219
LP G+ P VS QPP + A T SA PG G AP + H
Sbjct: 590 LPNPGLYPPPVSMSPGQPP---PQQLLAPTYFSA-PGVMNFGNPSYPYAPGALPPPPPPH 645
Query: 220 VHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
++ N Q A G V YYN + KP+ + P V ++P P
Sbjct: 646 LYP---------NTQ-----APSQVYGGVTYYNPAQ-QQVQPKPSPPRRTPQPVSIKPPP 690
>UNIPROTKB|Q5F457 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0008380 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AJ851443 IPI:IPI00584023
RefSeq:NP_001025995.1 UniGene:Gga.7915 ProteinModelPortal:Q5F457
STRING:Q5F457 GeneID:418829 KEGG:gga:418829 CTD:11193
eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
InParanoid:Q5F457 KO:K13220 OrthoDB:EOG4R7VBT NextBio:20821967
Uniprot:Q5F457
Length = 398
Score = 143 (55.4 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 34/101 (33%), Positives = 45/101 (44%)
Query: 215 DKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVP 274
+KKE S + W + G YYYN TGES +EKP GF+G
Sbjct: 117 EKKEKKKKTREGTSESPKTEPKEWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNS---- 172
Query: 275 VQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315
H TG+ W + DG YYYN++ VS+W+ P
Sbjct: 173 ------KTSH-TGSVWVEGVSEDGHTYYYNTQTGVSTWEKP 206
Score = 40 (19.1 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 818 QR-KHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
QR KH D + S ++G P ++ +R E
Sbjct: 218 QRGKHSEEADSRASESDSEQEDSESEGQSPGTNLKRKGE 256
Score = 38 (18.4 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSD 738
+ K A+ S +A E+ D W + + E++P + + +L S++
Sbjct: 295 KEKIALASKEASSDESKTDTYGKWKAIKNEEEEEPDEKV-DLELPSTE 341
>UNIPROTKB|F1NXG2 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IEA] [GO:0070064
"proline-rich region binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
IPI:IPI00584023 OMA:HEEVDLE GeneTree:ENSGT00390000013956
EMBL:AADN02005497 Ensembl:ENSGALT00000027397 Uniprot:F1NXG2
Length = 398
Score = 142 (55.0 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 34/101 (33%), Positives = 44/101 (43%)
Query: 215 DKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVP 274
+KKE S + W + G YYYN TGES +EKP GF+G
Sbjct: 117 EKKEKKKKTREGTSESPKTEPKEWVQGLSPEGYTYYYNTKTGESQWEKPKGFQGNS---- 172
Query: 275 VQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315
H TG W + DG YYYN++ VS+W+ P
Sbjct: 173 ------KTSH-TGAVWVEGVSEDGHTYYYNTQTGVSTWEKP 206
Score = 40 (19.1 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 818 QR-KHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQE 855
QR KH D + S ++G P ++ +R E
Sbjct: 218 QRGKHSEEADSRASESDSEQEDSESEGQSPGTNLKRKGE 256
Score = 38 (18.4 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 691 RRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSD 738
+ K A+ S +A E+ D W + + E++P + + +L S++
Sbjct: 295 KEKIALASKEASSDESKTDTYGKWKAIKNEEEEEPDEKV-DLELPSTE 341
>UNIPROTKB|E2R5K5 [details] [associations]
symbol:CASC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008298 "intracellular mRNA localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] GO:GO:0005737 GO:GO:0030529
GO:GO:0008298 CTD:22794 GeneTree:ENSGT00390000006930 KO:K14323
OMA:HRHQGPG GO:GO:0035145 InterPro:IPR018545 Pfam:PF09405
SMART:SM01044 EMBL:AAEX03006465 RefSeq:XP_537649.2
Ensembl:ENSCAFT00000025611 GeneID:480528 KEGG:cfa:480528
NextBio:20855536 Uniprot:E2R5K5
Length = 703
Score = 139 (54.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 70/240 (29%), Positives = 88/240 (36%)
Query: 49 WMPTIPSFSTPPGLFVTPQ-----TQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 103
W P PSF P L P PP + YSS RP VP P
Sbjct: 476 WSPGQPSFLQPRELRSMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRP-VPEPP 534
Query: 104 APSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQ-MGVRPWLPFLPYPAAYP--SPFP 160
AP S ++ Y PI P PPQ M V+P + LP+P +P +P P
Sbjct: 535 APPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEM-HLPHPGLHPHQTPAP 593
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS-GTDKKEH 219
LP G+ P VS QPP + A T SA PG G AP + H
Sbjct: 594 LPNPGLYPPPVSMSPGQPP---PQQLLAPTYFSA-PGVMNFGNPSYPYAPGALPPPPPPH 649
Query: 220 VHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
++ N Q A G V YYN + KP+ + P V ++P P
Sbjct: 650 LYP---------NTQ-----APSQVYGGVTYYNPAQ-QQVQPKPSPPRRTPQPVTIKPPP 694
>UNIPROTKB|O15234 [details] [associations]
symbol:CASC3 "Protein CASC3" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006950 "response to stress" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0008298 "intracellular mRNA
localization" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0035145 "exon-exon junction
complex" evidence=IDA] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0042802 "identical protein binding" evidence=IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 GO:GO:0005829 GO:GO:0048471
GO:GO:0010467 GO:GO:0006417 GO:GO:0006950 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0042802 TCDB:3.A.18.1.1 GO:GO:0030529 GO:GO:0008298
GO:GO:0051028 CTD:22794 eggNOG:NOG318950 HOGENOM:HOG000069997
KO:K14323 OMA:HRHQGPG OrthoDB:EOG4P5K9B GO:GO:0035145
InterPro:IPR018545 Pfam:PF09405 SMART:SM01044 EMBL:X80199
EMBL:AK292425 EMBL:AC068669 EMBL:BC044656 EMBL:BC050526
IPI:IPI00289491 RefSeq:NP_031385.2 UniGene:Hs.592129 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
ProteinModelPortal:O15234 SMR:O15234 DIP:DIP-33288N IntAct:O15234
STRING:O15234 PhosphoSite:O15234 PaxDb:O15234 PRIDE:O15234
Ensembl:ENST00000264645 GeneID:22794 KEGG:hsa:22794 UCSC:uc002hue.3
GeneCards:GC17P038296 HGNC:HGNC:17040 HPA:HPA024592 MIM:606504
neXtProt:NX_O15234 PharmGKB:PA134948596 HOVERGEN:HBG050799
InParanoid:O15234 PhylomeDB:O15234 ChiTaRS:CASC3
EvolutionaryTrace:O15234 GenomeRNAi:22794 NextBio:43124
PMAP-CutDB:O15234 ArrayExpress:O15234 Bgee:O15234 CleanEx:HS_CASC3
Genevestigator:O15234 GermOnline:ENSG00000108349 Uniprot:O15234
Length = 703
Score = 138 (53.6 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 70/240 (29%), Positives = 88/240 (36%)
Query: 49 WMPTIPSFSTPPGLFVTPQ-----TQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 103
W P PSF P L P PP + YSS RP VP P
Sbjct: 476 WSPGQPSFLQPRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRP-VPEPP 534
Query: 104 APSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQ-MGVRPWLPFLPYPAAYP--SPFP 160
AP S ++ Y PI P PPQ M V+P + LP+P +P +P P
Sbjct: 535 APPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMLVQPGMN-LPHPGLHPHQTPAP 593
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS-GTDKKEH 219
LP G+ P VS QPP + A T SA PG G AP + H
Sbjct: 594 LPNPGLYPPPVSMSPGQPP---PQQLLAPTYFSA-PGVMNFGNPSYPYAPGALPPPPPPH 649
Query: 220 VHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
++ N Q A G V YYN + KP+ + P V ++P P
Sbjct: 650 LYP---------NTQ-----APSQVYGGVTYYNPAQ-QQVQPKPSPPRRTPQPVTIKPPP 694
>MGI|MGI:1913401 [details] [associations]
symbol:Prr13 "proline rich 13" species:10090 "Mus musculus"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1913401 GO:GO:0005730 GO:GO:0006355
GO:GO:0006351 CTD:54458 EMBL:AK002430 EMBL:AK003850 EMBL:AK008611
EMBL:AK008894 EMBL:AK154583 EMBL:BC016234 IPI:IPI00132616
RefSeq:NP_001164382.1 RefSeq:NP_079661.1 UniGene:Mm.393955
PhosphoSite:Q9CQJ5 PRIDE:Q9CQJ5 Ensembl:ENSMUST00000023810
Ensembl:ENSMUST00000164688 Ensembl:ENSMUST00000164957
Ensembl:ENSMUST00000171245 GeneID:66151 KEGG:mmu:66151
UCSC:uc007xvr.2 eggNOG:NOG26810 GeneTree:ENSGT00440000039014
InParanoid:Q9CQJ5 OMA:PQGNPAF OrthoDB:EOG4D26S6 NextBio:320780
Bgee:Q9CQJ5 CleanEx:MM_PRR13 Genevestigator:Q9CQJ5
GermOnline:ENSMUSG00000023048 Uniprot:Q9CQJ5
Length = 137
Score = 110 (43.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 40/134 (29%), Positives = 53/134 (39%)
Query: 92 SAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLP-PIGVSPQG----PLLRPPQMGVRPWL 146
+AG P P P S A + P +P P P G+ PQG P RPP +P
Sbjct: 5 NAGPNPYPPQVVCPGGSNPACPPPLNPAFPPGPCPPGI-PQGNPAFPPCRPPYPVPQPGC 63
Query: 147 PFLPYPAAYPSPFPLPAHGM-P-NPSVSQIDAQPPGL---SSVRTAAATSHSAIPGHQLV 201
P YP P+P PA GM P NP + PG+ R +H H
Sbjct: 64 PGYQPSGPYPPPYPPPAPGMCPVNPPAPGMVG--PGIVIDKKTRKKMKKAHKKSHKHHKH 121
Query: 202 GTSGNTEAPPSGTD 215
G ++ + S +D
Sbjct: 122 GKHSSSSSSSSSSD 135
>UNIPROTKB|F1NI65 [details] [associations]
symbol:SHISA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004871 "signal transducer activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0043123 "positive regulation of
I-kappaB kinase/NF-kappaB cascade" evidence=IEA] [GO:0050699 "WW
domain binding" evidence=IEA] GO:GO:0005783 GO:GO:0005635
GO:GO:0006915 GO:GO:0006917 GO:GO:0043123 GO:GO:0004871
InterPro:IPR026910 Pfam:PF13908 GeneTree:ENSGT00530000063874
IPI:IPI00601649 OMA:YHETVAA EMBL:AADN02013897
Ensembl:ENSGALT00000007426 Uniprot:F1NI65
Length = 141
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 100 PTPSAPSNSGSAIQHQIYPTYPSLPP-IGVSP-QGPLLRPPQMGVRPWLPFLPYPAAYPS 157
P P + + + + H YP +PP +P QG +P + +P +P PYPA YP
Sbjct: 41 PQPVVTTTTATTVVHAPYPQQQGVPPSYPAAPYQG--YQPVAIQPQPGMPVAPYPAQYPP 98
Query: 158 PFPLPAHGMP 167
P+P+ G P
Sbjct: 99 PYPMQPPGPP 108
>UNIPROTKB|F1SKK9 [details] [associations]
symbol:SHISA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050699 "WW domain binding" evidence=IEA] [GO:0043123
"positive regulation of I-kappaB kinase/NF-kappaB cascade"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005635 "nuclear
envelope" evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] GO:GO:0005783 GO:GO:0005635 GO:GO:0006915
GO:GO:0006917 GO:GO:0043123 GO:GO:0004871 InterPro:IPR026910
Pfam:PF13908 GeneTree:ENSGT00530000063874 KO:K10135 EMBL:CU633242
RefSeq:XP_003483225.1 Ensembl:ENSSSCT00000012434 GeneID:100738352
KEGG:ssc:100738352 OMA:YHETVAA Uniprot:F1SKK9
Length = 137
Score = 108 (43.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 100 PTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRP-PQMGVRPWLPFLPYPAAYPSP 158
P P + + + + H YP PS+PP S GP + M +P +P PYP YP P
Sbjct: 39 PRPVVTTTTATTVVHAPYPQPPSVPP---SYPGPTYQGYHSMPSQPAMPAAPYPTQYPPP 95
Query: 159 FPLPAHGMP 167
+P G P
Sbjct: 96 YPAQPMGPP 104
>RGD|1308627 [details] [associations]
symbol:Sf3a2 "splicing factor 3a, subunit 2" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA;ISO] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000690 InterPro:IPR003604 InterPro:IPR015880
InterPro:IPR019134 PROSITE:PS50171 SMART:SM00355 SMART:SM00451
SMART:SM01050 RGD:1308627 GO:GO:0008380 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0005681 GO:GO:0003676 eggNOG:COG5246
GeneTree:ENSGT00670000097795 KO:K12826 CTD:8175
HOGENOM:HOG000154298 OrthoDB:EOG4P8FK1 HOVERGEN:HBG060566
OMA:GIHPQAP EMBL:BC079320 IPI:IPI00464554 RefSeq:NP_001011986.1
UniGene:Rn.102569 STRING:Q6AXT8 Ensembl:ENSRNOT00000026202
GeneID:299620 KEGG:rno:299620 UCSC:RGD:1308627 InParanoid:Q6AXT8
NextBio:645532 Genevestigator:Q6AXT8 Uniprot:Q6AXT8
Length = 471
Score = 129 (50.5 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 51/178 (28%), Positives = 69/178 (38%)
Query: 51 PTIPSFSTPPGLFVTPQTQAP-PGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSG 109
PT P+ S PPG PQ P PG+ G + G+ P P P++
Sbjct: 266 PTGPAPSGPPG---PPQMPPPAPGVHPPAPVVHPPTSGVHPPAPGVHPPAPVVHPPTSGV 322
Query: 110 SAIQHQIYPTYPSL-PPI-GVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMP 167
++P P + PP GV P P + PP GV P P + PA P P PA G+
Sbjct: 323 HPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPA--PGVHP-PAPGVH 379
Query: 168 NPSVSQIDAQPPGLS----SVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVH 221
P + + Q PG+ +V A H PG + + PP VH
Sbjct: 380 PPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAPGIHPQAPGVHPQPPPGVHPAAPGVH 437
>UNIPROTKB|F1RXC7 [details] [associations]
symbol:CASC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0031625
"ubiquitin protein ligase binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008298
"intracellular mRNA localization" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] GO:GO:0005737 GO:GO:0030529 GO:GO:0008298
GeneTree:ENSGT00390000006930 OMA:HRHQGPG GO:GO:0035145
InterPro:IPR018545 Pfam:PF09405 SMART:SM01044 EMBL:FP015991
Ensembl:ENSSSCT00000019028 Uniprot:F1RXC7
Length = 605
Score = 129 (50.5 bits), Expect = 0.00011, P = 0.00011
Identities = 68/240 (28%), Positives = 87/240 (36%)
Query: 49 WMPTIPSFSTPPGLFVTPQTQ-----APPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 103
W P PSF L P PP + YSS RP +P P
Sbjct: 378 WTPGQPSFMQSRELRGVPNHMHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRP-MPEPP 436
Query: 104 APSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQ-MGVRPWLPFLPYPAAYP--SPFP 160
AP S ++ Y PI P PPQ M V+P + LP+P +P +P P
Sbjct: 437 APPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEM-HLPHPGLHPHQTPAP 495
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS-GTDKKEH 219
LP G+ P VS QPP + A T SA PG G AP + H
Sbjct: 496 LPNPGLYPPPVSMSPGQPP---PQQLLAPTYFSA-PGVMNFGNPSYPYAPGALPPPPPPH 551
Query: 220 VHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
++ N Q A G V YYN + KP+ + P V ++P P
Sbjct: 552 LYP---------NTQ-----APSQVYGGVTYYNPAQ-QQVQPKPSPPRRTPQPVTIKPPP 596
>TAIR|locus:2143241 [details] [associations]
symbol:AT5G15780 "AT5G15780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002688 EMBL:AL391144
InterPro:IPR006041 Pfam:PF01190 EMBL:BT002428 EMBL:BT015871
IPI:IPI00546193 PIR:T51407 RefSeq:NP_197082.1 UniGene:At.10161
EnsemblPlants:AT5G15780.1 GeneID:831434 KEGG:ath:AT5G15780
TAIR:At5g15780 InParanoid:Q9LFU8 OMA:GTVYCDT
ProtClustDB:CLSN2719311 Genevestigator:Q9LFU8 Uniprot:Q9LFU8
Length = 401
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 44/130 (33%), Positives = 56/130 (43%)
Query: 51 PTIPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGS 110
P IPS TP L P +PP L + T + L P+ PTP+ P
Sbjct: 276 PLIPSIPTPT-LPPNPLIPSPPSLPPIPLIPTPPTL----PTIPLLPTPPTPTLPP---- 326
Query: 111 AIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPN-P 169
PT P+LPP+ V P P++ PP LP P P ++P P P P G+P P
Sbjct: 327 ------IPTIPTLPPLPVLPPVPIVNPPS------LP--PPPPSFPVPLP-PVPGLPGIP 371
Query: 170 SVSQIDAQPP 179
V I PP
Sbjct: 372 PVPLIPGIPP 381
>UNIPROTKB|F1NPB1 [details] [associations]
symbol:F1NPB1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005509 "calcium ion binding" evidence=IEA]
[GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA]
GeneTree:ENSGT00680000100026 OMA:TGPFPAS EMBL:AADN02055495
EMBL:AADN02055496 EMBL:AADN02055497 EMBL:AADN02055498
EMBL:AADN02055499 IPI:IPI00588066 ProteinModelPortal:F1NPB1
Ensembl:ENSGALT00000000020 Uniprot:F1NPB1
Length = 536
Score = 127 (49.8 bits), Expect = 0.00015, P = 0.00015
Identities = 48/147 (32%), Positives = 64/147 (43%)
Query: 53 IPSFSTPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSV---PTPSAPSNSG 109
+PS PP + P + PP L + G + P V P + P G
Sbjct: 315 LPSQGVPPTVGQLPPQEVPPS--PLPPQGLPPTVGQLPPPGAMPPIVLQLPPGAMPQTVG 372
Query: 110 SAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNP 169
+ PT LPP GV+P L+ PPQ G+ P + LP P A P P PL A MP P
Sbjct: 373 ELPPQVVPPTVGPLPPQGVAPMVGLI-PPQ-GLPPTVGQLP-PGAMP-P-PLTAGAMP-P 426
Query: 170 SVSQIDAQPPGLSSVRTAAATSHSAIP 196
+V Q+ P G+ + TA S +P
Sbjct: 427 TVGQLP--PQGVPA--TAGQLSIQGVP 449
>SGD|S000006356 [details] [associations]
symbol:URN1 "Putative protein of unknown function containing
WW and FF domains" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001202 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 SMART:SM00456 SGD:S000006356
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
EMBL:BK006949 EMBL:U40829 Gene3D:2.20.70.10 SUPFAM:SSF51045
OrthoDB:EOG4XH37P Gene3D:1.10.10.440 InterPro:IPR002713
Pfam:PF01846 SMART:SM00441 SUPFAM:SSF81698 EMBL:AY692740 PIR:S69038
RefSeq:NP_015478.1 PDB:2JUC PDBsum:2JUC ProteinModelPortal:Q06525
SMR:Q06525 DIP:DIP-2017N IntAct:Q06525 MINT:MINT-401712
STRING:Q06525 PaxDb:Q06525 EnsemblFungi:YPR152C GeneID:856275
KEGG:sce:YPR152C CYGD:YPR152c eggNOG:NOG305481 HOGENOM:HOG000141866
OMA:EPTKYHY EvolutionaryTrace:Q06525 NextBio:981586
Genevestigator:Q06525 GermOnline:YPR152C Uniprot:Q06525
Length = 465
Score = 107 (42.7 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 29/78 (37%), Positives = 38/78 (48%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKG-------EPDKVPVQPTPISMEHLTGTDW 290
W KT G YYYN T +S +EKP KG + + +PT S+E + G W
Sbjct: 5 WQEFKTPAGKKYYYNKNTKQSRWEKPNLKKGSNLESNAKESQTERKPT-FSLELVNG--W 61
Query: 291 ALVTTNDGKKYYYNSKMK 308
L+ NDG K Y+N K
Sbjct: 62 HLIIYNDGTKLYFNDDSK 79
Score = 67 (28.6 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 505
F E+ + FS W + KI DP F I+ + R +LFE +
Sbjct: 219 FFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEW 263
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(3) = 0.00017
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 765 VITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRR 812
++ A A + ED + ++ EPRY + E+ +W R
Sbjct: 393 LLKAPADSSSIEDILLSIEHRCCVSPIVVTEPRYYVVGILEKTVVWVR 440
>UNIPROTKB|A5D7H5 [details] [associations]
symbol:CASC3 "Protein CASC3" species:9913 "Bos taurus"
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0035145 "exon-exon junction
complex" evidence=IEA] [GO:0031625 "ubiquitin protein ligase
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] GO:GO:0048471 GO:GO:0006417 GO:GO:0006950
GO:GO:0000184 GO:GO:0008380 GO:GO:0016607 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0008298 GO:GO:0051028
EMBL:BC140556 IPI:IPI00695565 RefSeq:NP_001091538.1
UniGene:Bt.65846 ProteinModelPortal:A5D7H5 SMR:A5D7H5 STRING:A5D7H5
Ensembl:ENSBTAT00000008203 GeneID:531673 KEGG:bta:531673 CTD:22794
eggNOG:NOG318950 GeneTree:ENSGT00390000006930 HOGENOM:HOG000069997
InParanoid:A5D7H5 KO:K14323 OMA:HRHQGPG OrthoDB:EOG4P5K9B
NextBio:20875501 GO:GO:0035145 InterPro:IPR018545 Pfam:PF09405
SMART:SM01044 Uniprot:A5D7H5
Length = 703
Score = 127 (49.8 bits), Expect = 0.00022, P = 0.00022
Identities = 68/240 (28%), Positives = 87/240 (36%)
Query: 49 WMPTIPSFSTPPGLFVTPQ-----TQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 103
W P P+F L P PP + YSS RP VP P
Sbjct: 476 WSPGQPAFLQSRELRGMPNHIHMGAGPPPQFNRMEEMGVQGGRAKRYSSQRQRP-VPEPP 534
Query: 104 APSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQ-MGVRPWLPFLPYPAAYP--SPFP 160
AP S ++ Y PI P PPQ M V+P + LP+P +P +P P
Sbjct: 535 APPVHISIMEGHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEM-HLPHPGLHPHQTPAP 593
Query: 161 LPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPS-GTDKKEH 219
LP G+ P VS QPP + A T SA PG G AP + H
Sbjct: 594 LPNPGLYPPPVSMSPGQPP---PQQLLAPTYFSA-PGVMNFGNPSYPYAPGALPPPPPPH 649
Query: 220 VHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTP 279
++ N Q A G V YYN + KP+ + P V ++P P
Sbjct: 650 LYP---------NTQ-----APSQVYGGVTYYNPAQ-QQVQPKPSPPRRTPQPVTIKPPP 694
>UNIPROTKB|Q8N114 [details] [associations]
symbol:SHISA5 "Protein shisa-5" species:9606 "Homo sapiens"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0005789 "endoplasmic reticulum
membrane" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IMP] [GO:0043123 "positive regulation of I-kappaB
kinase/NF-kappaB cascade" evidence=IMP] [GO:0050699 "WW domain
binding" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0007165 "signal transduction" evidence=IMP] GO:GO:0016021
GO:GO:0006915 GO:GO:0006917 GO:GO:0005789 EMBL:CH471055
GO:GO:0043123 GO:GO:0031965 GO:GO:0004871 InterPro:IPR026910
Pfam:PF13908 CTD:51246 eggNOG:NOG42686 HOVERGEN:HBG106208 KO:K10135
OrthoDB:EOG4HX52F EMBL:AF520698 EMBL:AH011688 EMBL:AB097007
EMBL:AK056328 EMBL:AK075441 EMBL:AK124652 EMBL:AL117413
EMBL:AL832568 EMBL:BC001463 IPI:IPI00166039 IPI:IPI00743122
IPI:IPI00796691 IPI:IPI00876934 RefSeq:NP_001258995.1
RefSeq:NP_001258996.1 RefSeq:NP_001258997.1 RefSeq:NP_001259011.1
RefSeq:NP_001259012.1 RefSeq:NP_057563.3 UniGene:Hs.414579
ProteinModelPortal:Q8N114 IntAct:Q8N114 STRING:Q8N114
PhosphoSite:Q8N114 DMDM:74714697 PaxDb:Q8N114 PRIDE:Q8N114
Ensembl:ENST00000296444 Ensembl:ENST00000426002
Ensembl:ENST00000442747 Ensembl:ENST00000444115 GeneID:51246
KEGG:hsa:51246 UCSC:uc003ctm.2 UCSC:uc003cto.1 UCSC:uc003ctt.3
GeneCards:GC03M048485 HGNC:HGNC:30376 HPA:HPA042295 MIM:607290
neXtProt:NX_Q8N114 PharmGKB:PA162403295 InParanoid:Q8N114
OMA:MSGFGAT PhylomeDB:Q8N114 ChiTaRS:SHISA5 GenomeRNAi:51246
NextBio:54370 ArrayExpress:Q8N114 Bgee:Q8N114 CleanEx:HS_SHISA5
Genevestigator:Q8N114 Uniprot:Q8N114
Length = 240
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 27/70 (38%), Positives = 34/70 (48%)
Query: 100 PTPSAPSNSGSAIQHQIYPTYPSLPPI--GVSPQGPLLRPPQMGVRPWLPFLPYPAAYPS 157
P P + + + + H YP PS+PP G S QG PPQ P +P PYP YP
Sbjct: 142 PRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQ----PGMPAAPYPMQYPP 197
Query: 158 PFPLPAHGMP 167
P+P G P
Sbjct: 198 PYPAQPMGPP 207
>UNIPROTKB|B7Z4M2 [details] [associations]
symbol:WBP4 "cDNA FLJ52917, highly similar to WW
domain-binding protein 4" species:9606 "Homo sapiens" [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001202
InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159
PROSITE:PS50020 SMART:SM00456 GO:GO:0008270 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL157877 HOVERGEN:HBG053152 UniGene:Hs.411300
HGNC:HGNC:12739 EMBL:AK297536 IPI:IPI00922785 SMR:B7Z4M2
STRING:B7Z4M2 Ensembl:ENST00000542082 UCSC:uc010tfd.2
Uniprot:B7Z4M2
Length = 355
Score = 121 (47.7 bits), Expect = 0.00034, P = 0.00034
Identities = 30/108 (27%), Positives = 48/108 (44%)
Query: 210 PPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGE 269
PP+ T ++ + + + W T G YYY+ ++G S +EKP GF+G+
Sbjct: 81 PPTSTSNQQK--EKKEKKKRKKDPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGD 138
Query: 270 PDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
K V+ T W + DG YYYN++ S W+ P +
Sbjct: 139 LKKTAVK-----------TVWVEGLSEDGFTYYYNTETGESRWEKPDD 175
>UNIPROTKB|Q17QQ6 [details] [associations]
symbol:WBP4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070064 "proline-rich region binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000690
InterPro:IPR001202 InterPro:IPR003604 InterPro:IPR013085
Pfam:PF00397 Pfam:PF06220 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50171 SMART:SM00451 SMART:SM00456 GO:GO:0005886
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 GO:GO:0005681
GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0045292
CTD:11193 eggNOG:NOG125287 HOGENOM:HOG000067962 HOVERGEN:HBG053152
KO:K13220 OrthoDB:EOG4R7VBT OMA:HEEVDLE
GeneTree:ENSGT00390000013956 EMBL:DAAA02032752 EMBL:DAAA02032753
EMBL:BC118233 IPI:IPI00700299 RefSeq:NP_001068719.1
UniGene:Bt.21949 SMR:Q17QQ6 STRING:Q17QQ6
Ensembl:ENSBTAT00000022129 GeneID:506275 KEGG:bta:506275
InParanoid:Q17QQ6 NextBio:20867534 Uniprot:Q17QQ6
Length = 395
Score = 117 (46.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTG-TDWALVTTN 296
W T G YYY+ +TG S +EKP GF+G +++ TG T W +
Sbjct: 125 WVEGITSEGHHYYYDLITGASQWEKPEGFQG------------NLKKATGKTVWIEGLSE 172
Query: 297 DGKKYYYNSKMKVSSWQIPSE 317
DG YYYN++ S W+ P +
Sbjct: 173 DGYTYYYNTETGESRWEKPDD 193
Score = 49 (22.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 689 KVRRKEAV-TSFQALLVETIKDPQAS--WTESRPKLEKDPQGRATNADLDSSDREK 741
K ++KE + T Q L+++ + + S TE + EK+ QG+ ++ + +EK
Sbjct: 234 KEKKKEEIPTETQKLIIKFKEKNKNSNKRTEPETQKEKNTQGKNSSGPSEEKPKEK 289
Score = 48 (22.0 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 804 KEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSRSSTDGGRPPSSSRRNQER 856
KE+ + E +K K++ +N + K + G+ SSS N+E+
Sbjct: 253 KEKNKNSNKRTEPETQKEKNTQGKNSSGPSEEKPKEKNTQGK--SSSGSNEEK 303
>UNIPROTKB|O75554 [details] [associations]
symbol:WBP4 "WW domain-binding protein 4" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0070064 "proline-rich region binding"
evidence=IPI] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR000690 InterPro:IPR001202
InterPro:IPR003604 InterPro:IPR013085 Pfam:PF00397 Pfam:PF06220
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50171 SMART:SM00451
SMART:SM00456 GO:GO:0005886 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0005681 GO:GO:0003676 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0045292 EMBL:AL157877 eggNOG:COG5104
CTD:11193 HOGENOM:HOG000067962 HOVERGEN:HBG053152 KO:K13220
OrthoDB:EOG4R7VBT EMBL:AF071185 EMBL:BC104879 EMBL:BC108310
IPI:IPI00026957 RefSeq:NP_009118.1 UniGene:Hs.411300 PDB:2DK1
PDB:2JXW PDBsum:2DK1 PDBsum:2JXW ProteinModelPortal:O75554
SMR:O75554 MINT:MINT-127038 STRING:O75554 PhosphoSite:O75554
PaxDb:O75554 PRIDE:O75554 Ensembl:ENST00000379487 GeneID:11193
KEGG:hsa:11193 UCSC:uc001uxt.3 GeneCards:GC13P041635
HGNC:HGNC:12739 HPA:HPA038965 MIM:604981 neXtProt:NX_O75554
PharmGKB:PA37350 InParanoid:O75554 OMA:HEEVDLE PhylomeDB:O75554
EvolutionaryTrace:O75554 GenomeRNAi:11193 NextBio:42605
ArrayExpress:O75554 Bgee:O75554 CleanEx:HS_WBP4
Genevestigator:O75554 GermOnline:ENSG00000120688 Uniprot:O75554
Length = 376
Score = 121 (47.7 bits), Expect = 0.00038, P = 0.00038
Identities = 30/108 (27%), Positives = 48/108 (44%)
Query: 210 PPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGE 269
PP+ T ++ + + + W T G YYY+ ++G S +EKP GF+G+
Sbjct: 102 PPTSTSNQQK--EKKEKKKRKKDPSKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGD 159
Query: 270 PDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
K V+ T W + DG YYYN++ S W+ P +
Sbjct: 160 LKKTAVK-----------TVWVEGLSEDGFTYYYNTETGESRWEKPDD 196
>UNIPROTKB|Q5ZIS9 [details] [associations]
symbol:Shisa5 "Protein shisa-5" species:9031 "Gallus
gallus" [GO:0006915 "apoptotic process" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0005789 "endoplasmic
reticulum membrane" evidence=IEA] [GO:0031965 "nuclear membrane"
evidence=IEA] GO:GO:0016021 GO:GO:0006915 GO:GO:0005789
GO:GO:0031965 InterPro:IPR026910 Pfam:PF13908 CTD:51246
eggNOG:NOG42686 HOGENOM:HOG000063715 HOVERGEN:HBG106208 KO:K10135
OrthoDB:EOG4HX52F EMBL:AJ720705 IPI:IPI00601649
RefSeq:NP_001025762.1 UniGene:Gga.7816 GeneID:415948
KEGG:gga:415948 InParanoid:Q5ZIS9 NextBio:20819473 Uniprot:Q5ZIS9
Length = 139
Score = 101 (40.6 bits), Expect = 0.00050, P = 0.00050
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 100 PTPSAPSNSGSAIQHQIYPTYPSLPP-IGVSP-QGPLLRPPQMGVRPWLPFLPYPAAYPS 157
P P + + + + H YP +PP +P QG +P + +P +P PYPA YP
Sbjct: 39 PQPVVTTTTATTVVHAPYPQQQGVPPSYPAAPYQG--YQPVAIQPQPGMPVAPYPAQYPP 96
Query: 158 PFPL 161
P+P+
Sbjct: 97 PYPM 100
>ZFIN|ZDB-GENE-050222-4 [details] [associations]
symbol:tcf7 "transcription factor 7 (T-cell specific,
HMG-box)" species:7955 "Danio rerio" [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0021513 "spinal cord
dorsal/ventral patterning" evidence=IMP] [GO:0033339 "pectoral fin
development" evidence=IMP] [GO:0033333 "fin development"
evidence=IMP] InterPro:IPR009071 InterPro:IPR024940 Pfam:PF00505
ZFIN:ZDB-GENE-050222-4 GO:GO:0016055 Gene3D:1.10.30.10
SMART:SM00398 SUPFAM:SSF47095 PROSITE:PS50118 GO:GO:0033339
HOVERGEN:HBG000419 InterPro:IPR013558 PANTHER:PTHR10373
Pfam:PF08347 GO:GO:0021513 EMBL:AY825025 IPI:IPI00896294
UniGene:Dr.134827 ProteinModelPortal:Q5PU94 SMR:Q5PU94
STRING:Q5PU94 Uniprot:Q5PU94
Length = 355
Score = 99 (39.9 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 36/108 (33%), Positives = 43/108 (39%)
Query: 121 PSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQP-P 179
P LP VSP + Q G+ P P LPY PSP +P G P V + Q
Sbjct: 106 PYLPNGPVSPSSNKVSVVQQGMHPLTPLLPYEHFNPSPTHMPTDGGQKPGVHRHQTQEIS 165
Query: 180 GLSSVRTAAAT------SHSAI--PGHQLVGTSGNTEAPPSGTDKKEH 219
G S+ T SHS + G G PPSG K+EH
Sbjct: 166 GFYSLPQGQITPSMNWFSHSLMLQSGMHPTGIPHPAIVPPSG--KQEH 211
Score = 64 (27.6 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 24/91 (26%), Positives = 43/91 (47%)
Query: 764 EVITAEAAAQETEDGKTVLNS-WSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQR-KH 821
EVI AE +E+ +L W R + + +Y ++ RKER+ + + R +
Sbjct: 254 EVI-AECTLKESAAINQILGRRWHALTR--EEQAKYYELARKERQLHMQLYPSWSARDNY 310
Query: 822 KSSLDQNEDNHKDSKSRSSTDGGRPPSSSRR 852
S+L + + +D + SST G R ++ R
Sbjct: 311 VSALGKKKRRKRDKQQDSSTGGKRSAFATSR 341
>UNIPROTKB|Q9DEG2 [details] [associations]
symbol:avenaII "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0046907 "intracellular transport" evidence=IEA]
InterPro:IPR000156 InterPro:IPR000697 Pfam:PF00568 PROSITE:PS50229
SMART:SM00160 SMART:SM00461 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 GO:GO:0046907 HOVERGEN:HBG006655 InterPro:IPR014885
Pfam:PF08776 GeneTree:ENSGT00440000039080 HSSP:P70429
EMBL:AADN02012170 EMBL:AADN02012171 UniGene:Gga.42897 EMBL:AB035522
IPI:IPI00578290 SMR:Q9DEG2 STRING:Q9DEG2 Ensembl:ENSGALT00000015140
Uniprot:Q9DEG2
Length = 513
Score = 120 (47.3 bits), Expect = 0.00081, P = 0.00081
Identities = 61/231 (26%), Positives = 88/231 (38%)
Query: 91 SSAGL--RPSVPTPSAPSNSGSAIQHQIY---PTYPSLPPIGVSPQGPLLRPPQMGVRPW 145
S+AG+ P P P P G A Q + P P PP + P GP PP +
Sbjct: 249 SNAGVVQGPPAPPPPPPLPPGPA-QASVAAPPPPGPPPPPPPLPPSGPPPPPPPPPLPSQ 307
Query: 146 LPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSG 205
P +P P P+P PLPA G VS+ + GL++ A A G +SG
Sbjct: 308 APTVPLPP--PAP-PLPASGFSAGFVSEENRPLTGLAAA-LAGAKLRKVSRGEDSSSSSG 363
Query: 206 NTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265
+ PS TD + G+ + E++ A A + + + E +K
Sbjct: 364 GGGSAPSKTDSGRGNGPLPLG-GSGLMEEMSALLARRRR---IAEKGSTEPEQKEDKTEE 419
Query: 266 FKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316
+ K TP LT W T +G K S+ K ++ PS
Sbjct: 420 AESSTSKASSTSTP----ELTRKPWERTNTVNGSKSPVISRPKSTTTGQPS 466
>FB|FBgn0013949 [details] [associations]
symbol:Ela "Elastin-like" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0035094 "response
to nicotine" evidence=IEP] EMBL:AE014297 GO:GO:0035094
GeneTree:ENSGT00700000104761 FlyBase:FBgn0013949 UniGene:Dm.5522
GeneID:42970 KEGG:dme:Dmel_CG7021 CTD:42970 GenomeRNAi:42970
NextBio:831584 EMBL:AY075334 RefSeq:NP_524491.1 IntAct:Q8SY52
MINT:MINT-339897 STRING:Q8SY52 EnsemblMetazoa:FBtr0084708
UCSC:CG7021-RA InParanoid:Q8SY52 OMA:LNNHNAF Uniprot:Q8SY52
Length = 329
Score = 117 (46.2 bits), Expect = 0.00083, P = 0.00083
Identities = 70/228 (30%), Positives = 93/228 (40%)
Query: 53 IPSFSTPPGLFVTPQTQAP-PGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSA 111
IP++ PPG P QAP P + SS+ G Y SAG +V P P A
Sbjct: 122 IPAYP-PPGF---PGQQAPVPYPAAGGSSGGSSSSGG-YQSAG---AVSPPGYPV--AGA 171
Query: 112 IQHQIYPT-YPSLPPIGVSPQGPLLRPPQMGVRPWLPF----LP-YPAAYPSPFPLPAHG 165
+ Q YP P P+G G P G P P+ LP YPA YP P PA+G
Sbjct: 172 VPAQ-YPVGVPPQQPVGAGAPGYF---PGTGAYPGYPYPGVYLPQYPA-YPQPAQFPAYG 226
Query: 166 MPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGH--QLVGTSG-NTEAPPSGT--DKKEHV 220
+ +V+Q PG++ V A + +PG Q TSG N P+ D
Sbjct: 227 VLPGAVAQPGV--PGVAGVPGAPGVA--GVPGAAGQAPATSGMNYHRYPAHNPADPSHWD 282
Query: 221 HDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKG 268
H S +N + HK G++ +NA S Y G+ G
Sbjct: 283 HHFS------MNTEYKEDGVHKGPFGVLNNHNAFGYGSGYG--GGYNG 322
>UNIPROTKB|E1BYV9 [details] [associations]
symbol:ENAH "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0046907 "intracellular transport" evidence=IEA]
InterPro:IPR000156 InterPro:IPR000697 Pfam:PF00568 PROSITE:PS50229
SMART:SM00160 SMART:SM00461 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0005622 GO:GO:0046907 InterPro:IPR014885 Pfam:PF08776
GeneTree:ENSGT00440000039080 EMBL:AADN02012170 EMBL:AADN02012171
IPI:IPI00819612 Ensembl:ENSGALT00000038757 ArrayExpress:E1BYV9
Uniprot:E1BYV9
Length = 552
Score = 120 (47.3 bits), Expect = 0.00090, P = 0.00090
Identities = 59/235 (25%), Positives = 85/235 (36%)
Query: 82 TSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMG 141
T A G P P P P+ + A P P PP + P GP PP
Sbjct: 286 TQQALGVVQGPPAPPPPPPLPPGPAQASVAAPP---PPGPPPPPPPLPPSGPPPPPPPPP 342
Query: 142 VRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLV 201
+ P +P P P+P PLPA G VS+ + GL++ A A G
Sbjct: 343 LPSQAPTVPLPP--PAP-PLPASGFSAGFVSEENRPLTGLAAA-LAGAKLRKVSRGEDSS 398
Query: 202 GTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYE 261
+SG + PS TD + G+ + E++ A A + + + E +
Sbjct: 399 SSSGGGGSAPSKTDSGRGNGPLPLG-GSGLMEEMSALLARRRR---IAEKGSTEPEQKED 454
Query: 262 KPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316
K + K TP LT W T +G K S+ K ++ PS
Sbjct: 455 KTEEAESSTSKASSTSTP----ELTRKPWERTNTVNGSKSPVISRPKSTTTGQPS 505
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.372 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 857 709 0.00083 121 3 11 23 0.48 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 57
No. of states in DFA: 621 (66 KB)
Total size of DFA: 369 KB (2180 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 73.92u 0.12s 74.04t Elapsed: 00:00:03
Total cpu time: 73.95u 0.12s 74.07t Elapsed: 00:00:03
Start: Fri May 10 10:16:29 2013 End: Fri May 10 10:16:32 2013