BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003014
(857 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains
pdb|3HFH|B Chain B, Crystal Structure Of Tandem Ff Domains
Length = 190
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 86/184 (46%), Gaps = 6/184 (3%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 519
+F + L ERGV+ FS WE EL IVFDPR+ + R +F++YV T
Sbjct: 10 QFXDXLLERGVSAFSTWEXELHXIVFDPRYLLLNPXE-RXQVFDQYVXTRAEEERREXXN 68
Query: 520 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNERVLPLX 578
F EE + + F D RF A++ DRE L NE V
Sbjct: 69 XIXQAXEDFXXXXEEAX--FNPRATFSEFAAXHAXDSRFXAIEXXXDREALFNEFVAAAR 126
Query: 579 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV-RHEDREVIF 637
S F +L + SRWS V D + DPRY +V RE +F
Sbjct: 127 XXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSXREDLF 185
Query: 638 NEYV 641
+Y+
Sbjct: 186 XQYI 189
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507
F E+L + S+W + DPR+ A+ S S R LF +Y++
Sbjct: 144 FFELLSNHHLDSQSRWSXVXDXVESDPRYXAVDSSSXREDLFXQYIE 190
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
pdb|4FQG|B Chain B, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
Length = 190
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 64/117 (54%), Gaps = 12/117 (10%)
Query: 690 VRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKT 749
++R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+
Sbjct: 3 MKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEA 61
Query: 750 LYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER 806
L ++ FR LL E T+ ++W K+++K +PR K +R
Sbjct: 62 LTKKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFSSSDR 107
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 26/124 (20%)
Query: 527 GFKQLLEEV--SEDIDHSTDYQTFKKKWGSDPRFEA---LDRKDRELLLNERVLPLXXXX 581
FK LL ++ S D+ S +T +K D R+E+ L+R+++E L NE + L
Sbjct: 11 NFKALLSDMVRSSDVSWSDTRRTLRK----DHRWESGSLLEREEKEKLFNEHIEALTKKK 66
Query: 582 XXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRY----KSVRHEDREVIF 637
F+ +L E ITL+S W +VK I+++DPR S R + RE F
Sbjct: 67 R-----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQRE--F 113
Query: 638 NEYV 641
EY+
Sbjct: 114 EEYI 117
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 752 ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKEREA 808
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 6 EEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKEK 53
Query: 809 LWRRHAEEIQRKHKSSLDQ 827
L+ H E + +K + Q
Sbjct: 54 LFNEHIEALTKKKREHFRQ 72
>pdb|2DOD|A Chain A, Solution Structure Of The First Ff Domain Of Human
Transcription Factor Ca150
Length = 82
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT 508
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 22 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKT 69
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 596 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYV 641
FK ML E+G ++ S W K + DPRY + ++R+ +F++YV
Sbjct: 23 FKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYV 67
>pdb|2KIS|A Chain A, Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2
Interdomain Linker
Length = 71
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT 508
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 12 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKT 59
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 596 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYV 641
FK ML E+G ++ S W K + DPRY + ++R+ +F++YV
Sbjct: 13 FKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYV 57
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
WT HK+ G YYYN T +ST+EKP K TP + L+ W ++
Sbjct: 16 WTEHKSPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDS 64
Query: 298 GKKYYYNSKMKVSSWQIPSEV 318
GK YYYNS+ K S W P E+
Sbjct: 65 GKTYYYNSQTKESRWAKPKEL 85
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W T G YYY+ ++G S +EKP GF+G+ K V+ T W + D
Sbjct: 7 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVK-----------TVWVEGLSED 55
Query: 298 GKKYYYNSKMKVSSWQIPSE 317
G YYYN++ S W+ P +
Sbjct: 56 GFTYYYNTETGESRWEKPDD 75
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTD--WALVTT 295
W K +G +YYYN +T +ST+EKP IS E L + W T
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKEL-------------ISQEELLLRENGWKAAKT 50
Query: 296 NDGKKYYYNSKMKVSSWQIPS 316
DGK YYYN + +SW IP+
Sbjct: 51 ADGKVYYYNPTTRETSWTIPA 71
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPA 264
+ W A KT G VYYYN T E+++ PA
Sbjct: 43 NGWKAAKTADGKVYYYNPTTRETSWTIPA 71
>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human
Transcription Factor Ca150
Length = 85
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 687 RLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746
R + +R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EH
Sbjct: 11 REQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEH 69
Query: 747 IKTL 750
I+ L
Sbjct: 70 IEAL 73
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 744 REHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SK 800
RE + E +F+ LL++++ + SWS +R L+ + R+ S
Sbjct: 9 REREQHKREEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSL 56
Query: 801 MPRKEREALWRRHAEEIQRKHKSS 824
+ R+E+E L+ H E + +K + S
Sbjct: 57 LEREEKEKLFNEHIEALTKKKRES 80
>pdb|1UZC|A Chain A, The Structure Of An Ff Domain From Human HypaFBP11
pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate
At Atomic Resolution
Length = 71
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 505
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65
>pdb|2DOE|A Chain A, Solution Structure Of The Third Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 506
F E+L + S+W K K+ DPR+KA+ S S R LF++Y+
Sbjct: 23 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 68
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 610 SRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 641
SRWSKVKD + DPRYK+V RE +F +Y+
Sbjct: 36 SRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 68
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 689 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 13 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 69
Query: 749 TL 750
+
Sbjct: 70 KI 71
>pdb|2LKS|A Chain A, Ff11-60
Length = 50
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARR 499
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++
Sbjct: 3 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide
Apptppplpp
pdb|1YWJ|A Chain A, Structure Of The Fbp11ww1 Domain
Length = 41
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 229 ASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKP 263
ASV WT HK+ G YYYN T +ST+EKP
Sbjct: 5 ASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding
Transition State
Length = 49
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARR 499
TKEE FKE LKE+ V + WE+ + I+ DPR+ A+ S ++
Sbjct: 3 TKEEAKQAFKEALKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|2DK1|A Chain A, Solution Structure Of Ww Domain In Ww Domain Binding
Protein 4 (Wbp-4)
Length = 50
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKV 273
W T G YYY+ ++G S +EKP GF+G+ K
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKT 44
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 82 TSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMG 141
T FGD S AG P P+ P+ S S +++ PTY + P P+L Q+G
Sbjct: 17 TLVVFGDSLSDAG---QFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLG 73
Query: 142 VRP 144
+ P
Sbjct: 74 IAP 76
>pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11
pdb|2DYF|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 HYPA
(Fbp11 Ww1) Complexed With A Pl (Pplp) Motif Peptide
Ligand
Length = 30
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 237 AWTAHKTDTGIVYYYNAVTGESTYEKP 263
+WT HK+ G YYYN T +ST+EKP
Sbjct: 2 SWTEHKSPDGRTYYYNTETKQSTWEKP 28
>pdb|2DK7|A Chain A, Solution Structure Of Ww Domain In Transcription
Elongation Regulator 1
Length = 73
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 279 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
P++ + GT W +V T D + ++YN ++S W P ++
Sbjct: 11 PVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL 50
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus
pdb|2JUP|W Chain W, Fbp28ww2 Domain In Complex With The Pplipppp Peptide
pdb|2RLY|W Chain W, Fbp28ww2 Domain In Complex With Ptppplpp Peptide
pdb|2RM0|W Chain W, Fbp28ww2 Domain In Complex With A Ppplipppp Peptide
Length = 37
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267
WT +KT G YYYN T EST+EKP K
Sbjct: 8 WTEYKTADGKTYYYNNRTLESTWEKPQELK 37
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
++W T DGK YYYN++ S+W+ P E+
Sbjct: 6 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36
>pdb|2YSI|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Transcription Elongation Regulator 1, Transcription
Factor Ca150
Length = 40
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 228 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265
G+S E++ W +KT G VYYYNA T ES + KP G
Sbjct: 4 GSSGTEEI--WVENKTPDGKVYYYNARTRESAWTKPDG 39
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
W T DGK YYYN++ + S+W P V
Sbjct: 12 WVENKTPDGKVYYYNARTRESAWTKPDGV 40
>pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|B Chain B, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|C Chain C, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|D Chain D, General Structural Motifs Of Amyloid Protofilaments
Length = 40
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267
WT +KT G +YYN T EST+EKP K
Sbjct: 11 WTEYKTADGKTFYYNNRTLESTWEKPQELK 40
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 281 SMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
SM ++W T DGK +YYN++ S+W+ P E+
Sbjct: 2 SMGATAVSEWTEYKTADGKTFYYNNRTLESTWEKPQEL 39
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 237 AWTAHKTDTGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
W + G VYY+N +T S +E+P+G +GEP +V
Sbjct: 10 GWEKRMSADGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 54
>pdb|2KIQ|A Chain A, Solution Structure Of The Ff Domain 2 Of Human
Transcription Elongation Factor Ca150
Length = 62
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 506
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 12 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV 57
>pdb|2JUC|A Chain A, Urn1 Ff Domain Yeast
Length = 59
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 505
F E+ + FS W + KI DP F I+ + R +LFE +
Sbjct: 12 FFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEW 56
>pdb|2E71|A Chain A, Solution Structure Of The Second Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 506
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 23 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV 68
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 240 AHKTDTGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
A +G VYY+N +T S +E+P+G +GEP +V
Sbjct: 9 AMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 50
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 240 AHKTDTGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
A +G VYY+N +T S +E+P+G +GEP +V
Sbjct: 14 AMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 55
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product Derivatives
Length = 166
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 245 TGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
+G VYY+N +T S +E+P+G +GEP +V
Sbjct: 22 SGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 58
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 245 TGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
+G VYY+N +T S +E+P+G +GEP +V
Sbjct: 23 SGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 242 KTDTGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
+ G VYY+N +T S +E+P+G +GEP +V
Sbjct: 14 RMSNGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 53
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1 Inhibitors
By Structure-Guided Fragment Evolution
Length = 167
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 8/37 (21%)
Query: 245 TGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 273
+G VYY+N +T S +E+P+G +GEP +V
Sbjct: 23 SGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 59
>pdb|3JZE|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
pdb|3JZE|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of
Dihydroorotase (Pyrc) From Salmonella Enterica Subsp.
Enterica Serovar Typhimurium Str. Lt2
Length = 372
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 726 QGRATNADLDSSDREKLFREHIKTLYERCAHDFRGL--LAEVITAEAAAQETEDGKTVLN 783
G T+AD+D DRE F I T+ E L + E IT + AAQ DG L
Sbjct: 164 HGEVTHADVDIFDREARF---IDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLA 220
Query: 784 SWSTAKRVL 792
+ T + ++
Sbjct: 221 ATITPQHLM 229
>pdb|1E0M|A Chain A, Prototype Ww Domain
Length = 37
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIP 315
W T++GK YYYN K S+W P
Sbjct: 8 WDEYKTHNGKTYYYNHNTKTSTWTDP 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,334,817
Number of Sequences: 62578
Number of extensions: 860456
Number of successful extensions: 1886
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1803
Number of HSP's gapped (non-prelim): 78
length of query: 857
length of database: 14,973,337
effective HSP length: 107
effective length of query: 750
effective length of database: 8,277,491
effective search space: 6208118250
effective search space used: 6208118250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)