BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003014
(857 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/779 (57%), Positives = 572/779 (73%), Gaps = 44/779 (5%)
Query: 63 FVTPQTQAPPGLLTLRTKDTSSAF-GDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYP 121
F P T APPGL+T + AF G S RP + A N G I +YP Y
Sbjct: 94 FGRPGTLAPPGLMT-----SPPAFPGSNPFSTTPRPGMSAGPAQMNPG--IHPHMYPPYH 146
Query: 122 SLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGL 181
SLP +PQG L+PP MG P PFL +P +P +P P G+ +P++ + P G
Sbjct: 147 SLP---GTPQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGI-SPNLPYSGSHPLGA 202
Query: 182 SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGAS-VNEQLDAWTA 240
S + + A+PG Q + G K E + + R G+ V +LDAWTA
Sbjct: 203 SPMGSVGNVH--ALPGRQPDISPGR---------KTEELSGIDDRAGSQLVGNRLDAWTA 251
Query: 241 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKK 300
HK++ G++YYYN+VTG+STYEKP GF GEPDKVPVQP P+SME L GTDWALV+TNDGKK
Sbjct: 252 HKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKK 311
Query: 301 YYYNSKMKVSSWQIPSEVTELKKKEDDDTLKE-QSVPNTNIVIEKGSNAISLSSPAVNTG 359
YYYN+K KVSSWQIP+EV + KK ++ ++ SVP+ ++ EKGS+ SLS+PA++ G
Sbjct: 312 YYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLT-EKGSDLTSLSAPAISNG 370
Query: 360 GRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKG 419
GRDA +L+T++ SSALDL+KKKL DSG P +S TSE+N K EVT G
Sbjct: 371 GRDAASLKTTNF--GSSALDLVKKKLHDSGMPVSS-------TITSEANSGKTTEVTPSG 421
Query: 420 LQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKE 479
++ N+ K+KD G G +SDSSSDSED ++GP+KEEC +FKEMLKERG+APFSKWEKE
Sbjct: 422 -ESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKE 480
Query: 480 LPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDI 539
LPKI+FDPRFKAI S S RR+LFE+YVKTRAEEER+EKRAA KAAIEGF+QLL++ S DI
Sbjct: 481 LPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDI 540
Query: 540 DHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSM 599
D TDY+ FKKKWG+D RFEA++RK+RE LLNERVL LKR+AE+KAQ IRAAAAS FK+M
Sbjct: 541 DQHTDYRAFKKKWGNDLRFEAIERKEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTM 600
Query: 600 LREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARR 659
LRE+ +I+++S WSKVKD LR++PRY+SV HEDREV + EY+ ELKAA+ + E KA R
Sbjct: 601 LRER-EISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEYIAELKAAQRGDDHEMKA-R 658
Query: 660 EEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRP 719
+E++KL+ERERE+RKRKERE QE+ERVR K+RRKEA +S+QALLVE I+DP+ASWTES+P
Sbjct: 659 DEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKP 718
Query: 720 KLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGK 779
LE+DPQ RA+N DL+ +D+EKLFR+H+K+LYERC HDF+ LLAE +++EAA +TEDGK
Sbjct: 719 ILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGK 778
Query: 780 TVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSR 838
T LNSWSTAK+VLKP+ RYSKMPR++RE +WRR+ E+I RK Q +N+++ K R
Sbjct: 779 TALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRK------QRHENYQEEKQR 831
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 461 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV-------------- 506
FK ML+ER ++ S W K + +PR++++ + R + Y+
Sbjct: 597 FKTMLREREISINSHWSKVKDSLRNEPRYRSVAHED-REVFYYEYIAELKAAQRGDDHEM 655
Query: 507 KTRAEE---------------------ERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDY 545
K R EE ER ++ +K A ++ LL E D + S +
Sbjct: 656 KARDEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEAS--W 713
Query: 546 QTFKKKWGSDPRFEA----LDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLR 601
K DP+ A L+ D+E L + V L +A+ A A SS + L+
Sbjct: 714 TESKPILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQ 773
Query: 602 EKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVREL------KAAEEEAEREA 655
+ T + WS K +L+ D RY + +DREV++ YV ++ + +EE +R+
Sbjct: 774 TEDGKTALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRKQRHENYQEEKQRDY 833
Query: 656 K 656
K
Sbjct: 834 K 834
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 207/721 (28%), Positives = 321/721 (44%), Gaps = 135/721 (18%)
Query: 158 PFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKK 217
PF +P GMP P Q V+T A T +PG APP
Sbjct: 367 PFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGM----------APPIVPMIH 416
Query: 218 EHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK---------G 268
V +S + + WT +KT G YYYN T EST+EKP K
Sbjct: 417 PQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIK 476
Query: 269 EPDK------------------VPV--------------------QPTPISMEHLTGTDW 290
EP K PV + P++ + GT W
Sbjct: 477 EPIKEASEEPLPMETEEEDPKEEPVKEIKEEPKEEEMTEEEKAAQKAKPVATTPIPGTPW 536
Query: 291 ALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAIS 350
+V T D + ++YN ++S W P DD + V
Sbjct: 537 CVVWTGDERVFFYNPTTRLSMWDRP-----------DDLIGRADVDKI------------ 573
Query: 351 LSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGS 410
+ P G D LR + + L + K + S +A E
Sbjct: 574 IQEPPHKKGLEDMKKLRHPA----PTMLSIQKWQF--------------SMSAIKEEQ-- 613
Query: 411 KAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECII-------KFKE 463
E+ + ++E K K + + + + + + E +E I+ +FK+
Sbjct: 614 ---ELMEEMNEDEPIKAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKD 670
Query: 464 MLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKA 523
ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKTRAEEER+EK+
Sbjct: 671 MLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKNKIMQ 729
Query: 524 AIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAE 582
A E FK+++EE + + F K D RF+A+++ KDRE L NE V ++ +
Sbjct: 730 AKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEK 787
Query: 583 EKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 641
E ++ S F +L + SRWSKVKD + DPRYK+V RE +F +Y+
Sbjct: 788 EDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 846
Query: 642 RELKA---AEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTS 698
++ +E+E E E +AR E L+ERERE++K + + +E++R R + +R+EA+ +
Sbjct: 847 EKIAKNLDSEKEKELERQARIEAS--LREREREVQKARSEQTKEIDREREQHKREEAIQN 904
Query: 699 FQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDF 758
F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L ++ F
Sbjct: 905 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEALTKKKREHF 963
Query: 759 RGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQ 818
R LL E T+ ++W K+++K +PR K +R+ +R EE
Sbjct: 964 RQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFSSSDRKK--QREFEEYI 1010
Query: 819 R 819
R
Sbjct: 1011 R 1011
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 76/323 (23%)
Query: 579 RAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFN 638
+AA E+A A FK ML E+G ++ S W K + DPRY + ++R+ +F+
Sbjct: 651 KAARERAIVPLEARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFD 709
Query: 639 EYVRELKAAEEEAEREAKAR--REEQEKLKE---------------------REREMRKR 675
+YV+ +A EE E++ K +E+ +K+ E R + + K
Sbjct: 710 QYVK-TRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKM 768
Query: 676 KEREE---------QEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ 726
K+RE ++ E+ K R ++ + F LL D Q+ W++ + K+E DP+
Sbjct: 769 KDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPR 828
Query: 727 GRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETE---------- 776
+A ++ SS RE LF+++I+ + + + L EA+ +E E
Sbjct: 829 YKAVDS---SSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQ 885
Query: 777 ------------------DGKTVLN--------SWSTAKRVLKPEPRY---SKMPRKERE 807
+ K +L+ SWS +R L+ + R+ S + R+E+E
Sbjct: 886 TKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 945
Query: 808 ALWRRHAEEIQRKHKSSLDQNED 830
L+ H E + +K + Q D
Sbjct: 946 KLFNEHIEALTKKKREHFRQLLD 968
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267
+ W +KT G VYYYNA T ES + KP G K
Sbjct: 135 EIWVENKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKE 325
W T DGK YYYN++ + S+W P V +++ E
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSE 172
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 218/785 (27%), Positives = 344/785 (43%), Gaps = 149/785 (18%)
Query: 98 SVPTP----SAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPA 153
SV TP S P+ + + +Q P +LPP P +P +P
Sbjct: 311 SVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAV----------PHSVPQPTTAIPAFPP 360
Query: 154 AYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSG 213
PF +P GMP P Q V+T A T +PG APP
Sbjct: 361 VMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGM----------APPIV 410
Query: 214 TDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKG----- 268
V +S + + WT +KT G YYYN T EST+EKP K
Sbjct: 411 PMIHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLE 470
Query: 269 --------EPDKVPV----------------------------------QPTPISMEHLT 286
EP + P+ + P++ +
Sbjct: 471 EKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATAPIP 530
Query: 287 GTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGS 346
GT W +V T D + ++YN ++S W P + L + D D +
Sbjct: 531 GTPWCVVWTGDERVFFYNPTTRLSMWDRPDD---LIGRADVDKI---------------- 571
Query: 347 NAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSE 406
+ P G + LR + + L + K + S +A E
Sbjct: 572 ----IQEPPHKKGMEELKKLRHPT----PTMLSIQKWQF--------------SMSAIKE 609
Query: 407 SNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECII------- 459
E+ + ++E K K + + + + + + E +E I+
Sbjct: 610 EQ-----ELMEEINEDEPVKAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMK 664
Query: 460 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRA 519
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKTRAEEER+EK+
Sbjct: 665 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKN 723
Query: 520 AQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLK 578
A E FK+++EE + + F K D RF+A+++ KDRE L NE V +
Sbjct: 724 KIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAAR 781
Query: 579 RAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIF 637
+ +E ++ S F +L + SRWSKVKD + DPRYK+V RE +F
Sbjct: 782 KKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLF 840
Query: 638 NEYVRELKA---AEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKE 694
+Y+ ++ +E+E E E +AR E L+ERERE++K + + +E++R R + +R+E
Sbjct: 841 KQYIEKIAKNLDSEKEKELERQARIEAS--LREREREVQKARSEQTKEIDREREQHKREE 898
Query: 695 AVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERC 754
A+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L ++
Sbjct: 899 AIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEALTKKK 957
Query: 755 AHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHA 814
FR LL E T+ ++W K+++K +PR K +R+ +R
Sbjct: 958 REHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFSSSDRKK--QREF 1004
Query: 815 EEIQR 819
EE R
Sbjct: 1005 EEYIR 1009
Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 76/323 (23%)
Query: 579 RAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFN 638
+AA E+A A FK ML E+G ++ S W K + DPRY + ++R+ +F+
Sbjct: 649 KAARERAIVPLEARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFD 707
Query: 639 EYVRELKAAEEEAEREAKAR--REEQEKLKE---------------------REREMRKR 675
+YV+ +A EE E++ K +E+ +K+ E R + + K
Sbjct: 708 QYVK-TRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKM 766
Query: 676 KEREE---------QEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ 726
K+RE ++ E+ K R ++ + F LL D Q+ W++ + K+E DP+
Sbjct: 767 KDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPR 826
Query: 727 GRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETE---------- 776
+A ++ SS RE LF+++I+ + + + L EA+ +E E
Sbjct: 827 YKAVDS---SSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQ 883
Query: 777 ------------------DGKTVLN--------SWSTAKRVLKPEPRY---SKMPRKERE 807
+ K +L+ SWS +R L+ + R+ S + R+E+E
Sbjct: 884 TKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 943
Query: 808 ALWRRHAEEIQRKHKSSLDQNED 830
L+ H E + +K + Q D
Sbjct: 944 KLFNEHIEALTKKKREHFRQLLD 966
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267
+ W +KT G VYYYNA T ES + KP G K
Sbjct: 135 EIWVENKTPDGKVYYYNARTRESAWTKPDGVK 166
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 290 WALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKE 325
W T DGK YYYN++ + S+W P V +++ E
Sbjct: 137 WVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSE 172
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 148/547 (27%), Positives = 232/547 (42%), Gaps = 78/547 (14%)
Query: 121 PSLPPI-GVSPQGPLLRPPQMGVRPWLPFLP--YPAAYPSPFPLPAHGMPNPSVSQIDAQ 177
P+ PP+ G + GP P F+P YP P+ P M +
Sbjct: 97 PNAPPMTGFATSGPPFSSP-------YTFVPSSYPQQQPTSLVQPNSQM------HVAGV 143
Query: 178 PPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGASVNEQLDA 237
PP ++ S S + Q G + P + VS+ G +
Sbjct: 144 PPAANTWPVPVNQSTSLVSPVQQTGQ----QTPVA----------VSTDPGNLTPQSASD 189
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W H + G YYYN T +S +EKP TP+ + T W TT +
Sbjct: 190 WQEHTSADGRKYYYNKRTKQSNWEKPLELM----------TPLERADAS-TVWKEFTTPE 238
Query: 298 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVN 357
GKKYYYN K S W IP ED +EQ+ + EK S + + S+P +
Sbjct: 239 GKKYYYNKVTKESKWTIP---------EDLKLAREQA----QLASEKTSLSEAGSTPLSH 285
Query: 358 TGGRD---ATALRTSSMPGSSSALDLIKKKLQDSGT-------PTASPA-PVSSAAATSE 406
A + TS +P +SSAL +G P+ +P P S A + +E
Sbjct: 286 HAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQAGLAVPVTRPPSVAPVTPTSGAISDTE 345
Query: 407 SNGSKAVEVTVKGL---------QNENTKDKLKDINGDGTMSDSS--SDSEDGETGPTKE 455
+ K ++ +G QN ++K +NG +S + ++ E+ TK+
Sbjct: 346 ATTIKGDNLSSRGADDSNDGATAQNNEAENKEMSVNGKANLSPAGDKANVEEPMVYATKQ 405
Query: 456 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERK 515
E FK +L+ V WE+ L +IV D R+ A+++ R+ F Y+ R + E +
Sbjct: 406 EAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAE 465
Query: 516 EKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERV 574
E+R QK A E F ++LEE E++ S + + +D RF+A+DR +DRE L + +
Sbjct: 466 ERRRRQKKAREEFVKMLEEC-EELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYI 524
Query: 575 LPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDRE 634
+ L+R EKA + ++ L I ++W K++D L DD R + DR
Sbjct: 525 VELERKEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRL 584
Query: 635 VIFNEYV 641
+ F EY+
Sbjct: 585 IGFEEYI 591
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 17/201 (8%)
Query: 461 FKEMLKERGVAPF----SKWEKELPKIVFDPRFKAIQSQ---SARRALFERYVKTRAEEE 513
F+ +L+E A + W ++ P+++A+ S S + LFE V E++
Sbjct: 620 FRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFED-VTEELEKQ 678
Query: 514 RKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNER 573
E ++ K A++ K + VS S ++ FK D + + + +L+ ++
Sbjct: 679 YHEDKSYVKDAMKSRK--ISMVS-----SWLFEDFKSAISEDLSTQQISDINLKLIYDDL 731
Query: 574 VLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED- 632
V +K E++A+ ++ A F ++L +IT++S W K ++ + Y+S+ E
Sbjct: 732 VGRVKEKEEKEARKLQ-RLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESV 790
Query: 633 REVIFNEYVRELKAAEEEAER 653
+ +F EY+ L+ +E ER
Sbjct: 791 SQGLFEEYITSLQEKAKEKER 811
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 209/465 (44%), Gaps = 84/465 (18%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
WT HK+ G YYYN T +ST+EKP K +++ L+ W ++
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL-----------LSKCPWKEYKSDS 194
Query: 298 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKG----SNAISLSS 353
GK YYYNS+ K S W P E+ +L+ + N ++ G SN ++
Sbjct: 195 GKPYYYNSQTKESRWAKPKELEDLEGYQ-------------NTIVAGGLITKSNLHAMIK 241
Query: 354 PAVNTGGRDATA-----LRTSSMPGSSSALDLIKKKLQD---------------SGTPT- 392
++ + T + T+ +P + S + + S TPT
Sbjct: 242 AEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTN 301
Query: 393 ------ASPAP-VSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGD---------- 435
+P P V+S AT+ N + T + Q NT ++D++GD
Sbjct: 302 TVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANTT-AIQDLSGDISSNTGEEPA 360
Query: 436 --GTMSDSSSDSEDGETGP--------TKEECIIKFKEMLKERGVAPFSKWEKELPKIVF 485
T+SD + E+ E+ P TKEE FKE+LKE+ V + WE+ + I+
Sbjct: 361 KQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 420
Query: 486 DPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDY 545
DPR+ A+ S ++ F Y +EE++E R+ K A E F++ LE E + +T Y
Sbjct: 421 DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLEN-HEKMTSTTRY 479
Query: 546 QTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGD 605
+ ++ +G + A+ +DR + + + L + +E+A+ +R + K++L +
Sbjct: 480 KKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMAN 539
Query: 606 ITLSSRWSKVKDILRDDPRY------KSVRHEDREVIFNEYVREL 644
+T S+ WS+ + L D+P + +++ ED + F E++R L
Sbjct: 540 VTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRAL 584
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 146/574 (25%), Positives = 243/574 (42%), Gaps = 86/574 (14%)
Query: 128 VSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTA 187
VS G L R P MG P + Y P A+ P P PP
Sbjct: 44 VSADGFLRRRPSMG----HPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQ 99
Query: 188 AATSHSAI-PGHQLVGTSGNTEAP--PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTD 244
S++ PG + S + P P G + DV++ + WT HK+
Sbjct: 100 MPGMMSSVMPGMMMSHMSQASMQPALPPGVNS----MDVAAGTASGAK---SMWTEHKSP 152
Query: 245 TGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYN 304
G YYYN T +ST+EKP K +++ L+ W ++ GK YYYN
Sbjct: 153 DGRTYYYNTETKQSTWEKPDDLKTPAEQL-----------LSKCPWKEYKSDSGKPYYYN 201
Query: 305 SKMKVSSWQIPSEVTELK---------------------------KKEDDDTLKEQSVPN 337
S+ K S W P E+ +L+ K+E+ T VP
Sbjct: 202 SQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPT 261
Query: 338 TNIVIEKGS-NAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPA 396
T I + A ++ V A A ++ S+SA + + SGT P
Sbjct: 262 TEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTV------SGTVPVVPE 315
Query: 397 P-VSSAAATSESNGSKAVEVTVKGLQNENT---KDKLKDINGDG--------TMSDSSSD 444
P V+S AT N + T + Q +T +D+ +++ + T++D +
Sbjct: 316 PEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPK 375
Query: 445 SEDGETGP--------TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQS 496
E+ E+ P TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S
Sbjct: 376 KEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLS 435
Query: 497 ARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDP 556
++ F Y +EE++E R+ K A E F++ LE E + +T Y+ ++ +G
Sbjct: 436 EKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQMFGEME 494
Query: 557 RFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVK 616
+ A+ +DR + + + L + +E+A+ +R + K++L ++T S+ WS+ +
Sbjct: 495 VWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQ 554
Query: 617 DILRDDPRY------KSVRHEDREVIFNEYVREL 644
L D+P + +++ ED + F E++R L
Sbjct: 555 QYLMDNPTFAEDEELQNMDKEDALICFEEHIRAL 588
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 122/451 (27%), Positives = 201/451 (44%), Gaps = 57/451 (12%)
Query: 235 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVT 294
L W H + G Y++N T +ST+EKP ++ + TDW +
Sbjct: 206 LTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADAR-----------TDWKEHS 254
Query: 295 TNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLK---EQSVPNTNIVIEKGSNA--- 348
+ DG+KYYYN K S+W +P E+ ++++ + +++ + + + + V+ + A
Sbjct: 255 SPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTA 314
Query: 349 --ISLSSPAVNTGGRDATALRT-----SSMPGSSSALDLIKKKLQDSGTPTASPAPVSSA 401
L S + G + L + +S+PGSSS ++ + + +Q S T+ S
Sbjct: 315 APTGLPSQTSTSEGVEKLTLTSDLKQPASVPGSSSPVENVDR-VQMSADETSQLCDTSET 373
Query: 402 AATS----ESNGSKAVEVTVKGLQNENTKDKLKDIN---GDGT--------MSDSS---S 443
S E++ + VE + N D + N G G+ M +S S
Sbjct: 374 DGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKPMVESEKVES 433
Query: 444 DSEDGETGP------TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSA 497
+E+ + K E + FK +LK V WE+ + +I+ D R+ A+++
Sbjct: 434 QTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGE 493
Query: 498 RRALFERYV---KTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGS 554
R+ F ++ K AEEER A QK E FK++LEE E + ST + +
Sbjct: 494 RKQAFNEFLLQTKRAAEEER---LARQKKLYEDFKRMLEECVE-LTPSTRWSKTVTMFED 549
Query: 555 DPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWS 613
D RF+AL+R KDR + + V LK KA R +K L I +S+W
Sbjct: 550 DERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWR 609
Query: 614 KVKDILRDDPRYKSVRHEDREVIFNEYVREL 644
KV+D L D R + D+ IF EY+R+L
Sbjct: 610 KVQDRLEVDERCSRLEKIDQLEIFQEYLRDL 640
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens
GN=TCERG1L PE=2 SV=2
Length = 586
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 77/319 (24%)
Query: 279 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNT 338
P++ + G+ W +V T D + +++N M +S W+ P +LK + D
Sbjct: 334 PVASTPVPGSPWCVVWTGDDRVFFFNPTMHLSVWEKP---MDLKDRGD-----------L 379
Query: 339 NIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPV 398
N +IE + L +PA +
Sbjct: 380 NRIIEDPPHKRKLEAPATD----------------------------------------- 398
Query: 399 SSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSED--GETGPTK-- 454
+S ++SE N ++++ K K G G+ + ED T P +
Sbjct: 399 NSDGSSSEDNR-----------EDQDVKTKRNRTEGCGSPKPEEAKREDKGTRTPPPQIL 447
Query: 455 ---EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAE 511
EE + F++ML ERGV+ FS WEKEL KIVFDPR+ + S+ R+ +FE++VKTR +
Sbjct: 448 LPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEE-RKQIFEQFVKTRIK 506
Query: 512 EERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLL 570
EE KEK++ A E FK+LLEE + T ++ F +K+G D RF + RKD+E
Sbjct: 507 EEYKEKKSKLLLAKEEFKKLLEE--SKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFF 564
Query: 571 NERVLPLKRAAEEKAQAIR 589
N+ +L LK+ +E +R
Sbjct: 565 NQFILILKKRDKENRLRLR 583
Score = 37.0 bits (84), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 593 ASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVR-ELKAAEEEA 651
+ F+ ML E+G ++ S W K + DPRY + E+R+ IF ++V+ +K +E
Sbjct: 454 VTHFRDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKEK 512
Query: 652 EREAKARREEQEKLKEREREMRKRKEREEQEM----ERVRLKVRRKEAVTSFQALLV 704
+ + +EE +KL E + + +E E +R RL +RK+ F ++
Sbjct: 513 KSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFIL 569
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 455 EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEER 514
EE + F++ML ERGV+ FS WEKEL KIVFDPR+ + S+ R+ +FE++VKTR +EE
Sbjct: 455 EERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEE-RKQIFEQFVKTRIKEEY 513
Query: 515 KEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNER 573
KE+++ A E FK+LLEE + T ++ F +K G D RF + RKD+E N+
Sbjct: 514 KERKSKLLLAKEEFKKLLEE--SKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQF 571
Query: 574 VLPLKRAAEEKAQAIR 589
+L LK+ +E +R
Sbjct: 572 ILILKKRDKENRLRLR 587
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 9/124 (7%)
Query: 593 ASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAE 652
+ F+ ML E+G ++ S W K + DPRY + E+R+ IF ++V+ + EE E
Sbjct: 458 VTHFRDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKT-RIKEEYKE 515
Query: 653 REAKAR--REEQEKLKEREREMRKRKEREEQEM----ERVRLKVRRKEAVTSF-QALLVE 705
R++K +EE +KL E + + +E E +R RL +RK+ F Q +L+
Sbjct: 516 RKSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILIL 575
Query: 706 TIKD 709
+D
Sbjct: 576 KKRD 579
Score = 36.6 bits (83), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 25/40 (62%)
Query: 279 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318
P++ + G+ W +V T D + +++N M++S W+ P ++
Sbjct: 338 PVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPVDL 377
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 119/535 (22%), Positives = 220/535 (41%), Gaps = 97/535 (18%)
Query: 148 FLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPP--GLSSVRTAAATSHSAIPGHQLVGTSG 205
LP ++ +P + A + ++Q PP ++ V +HS + H T
Sbjct: 1 MLPNGFSFLNPNLVAAANIQQVLLNQRFGMPPVGSIAQVPLLQMPTHSVVAPHVAAPTRP 60
Query: 206 NTEAPPSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265
+ P G E S SV W+ H + G YY+N VT ++++ KP
Sbjct: 61 SPMLVPPGMGIDE------SHSSPSVESD---WSVHTNEKGTPYYHNRVTKQTSWIKPDV 111
Query: 266 FKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS--EVTELKK 323
K P++ + S + G W ++DGK YYYN+ K + W P E+T+ ++
Sbjct: 112 LK-----TPLERS-TSGQPQQGQ-WKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQ 164
Query: 324 KEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTS-SMPGSSSALDLIK 382
K PA D AL + + S LD
Sbjct: 165 K-----------------------------PAAKAATVDTVALAAAVQQKKAESDLD--- 192
Query: 383 KKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSS 442
K + + P+ S ES EV +K Q+E ++ L+D DG ++ +
Sbjct: 193 -KAMKATLASMPNVPLPSEKKEEESVND---EVELKKRQSERFRELLRDKYNDGKITTNC 248
Query: 443 SDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALF 502
+ W++ + I DPRF+ + S ++ LF
Sbjct: 249 N--------------------------------WDQAVKWIQNDPRFRILNKVSEKKQLF 276
Query: 503 ERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD 562
+ R +EER EKR A K + E ++ L+E + + S YQ + +P + A++
Sbjct: 277 NAWKVQRGKEERDEKRLAIKKSKEDLEKFLQEHPK-MKESLKYQKASDIFSKEPLWIAVN 335
Query: 563 RKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDD 622
+DR+ + + + + R +EK + R ++F +L+ IT + W++ + IL ++
Sbjct: 336 DEDRKEIFRDCIDFVARRDKEKKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYEN 395
Query: 623 PRY---KSVRHEDRE---VIFNEYVRELKAAEEEAEREAKAR-REEQEKLKERER 670
P++ K + D+E +F +++++ + +E + + + R R +Q K++E R
Sbjct: 396 PQFAERKDLHFMDKEDALTVFEDHIKQAEKEHDEEKEQEEKRLRRQQRKVREEYR 450
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 463 EMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQ--SARRALFERYVKTRAEEERKEKRA 519
E L +RG + S W P I D RF+ + Q S+ LF+ +V+ E+ +++R
Sbjct: 454 ESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRL 513
Query: 520 AQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLK- 578
K++L E + +T+Y+ F S + +D + +L N + +
Sbjct: 514 --------IKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAES 565
Query: 579 RAAEEKAQAIRAA--AASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REV 635
+A +E+ +++R S F+++L+E ++ S W+ +K + D Y ++ ++D RE
Sbjct: 566 KAKDEEKESLRRKRRLESEFRNLLKE-HNVDKDSEWTVIKPKIEKDKAYLAMENDDERET 624
Query: 636 IFNEY 640
FN Y
Sbjct: 625 AFNHY 629
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 119/525 (22%), Positives = 210/525 (40%), Gaps = 92/525 (17%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W KT+ VYYYN+VT +S +EKP + +K L+ W T D
Sbjct: 36 WHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEK-----------KLSKLAWKEYATAD 84
Query: 298 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVN 357
GKKY+YN + S W IP E E EQ + I+ N ++ S +
Sbjct: 85 GKKYWYNVNTRESVWDIPDEYKAALVDE-----PEQQKKALSSKIKSNDNKPAVQS--IQ 137
Query: 358 TGGRDATALRTSSMPGSSSA-----------LDLIKKK-----------LQDSGTPTASP 395
G D A SS P + ++ +++K ++ T A+
Sbjct: 138 RHGPDVAA--PSSQPAKDQSQQISQGSHKRTINFVQQKDKRQKRSNDYQHENYDTYEAAE 195
Query: 396 APVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKD-----INGDGTMSDSSSDSEDGET 450
+ N S E TV+ L + +KD D + + +D D E
Sbjct: 196 RAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEK 255
Query: 451 GPTKEECIIKFKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTR 509
+ +F EMLK + ++ W + P F A S++ ++ LF Y +
Sbjct: 256 NRVTK-IRKEFIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKL 314
Query: 510 AEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRF------EALDR 563
E+E++ ++ +K A++ F LL + + + T + + K+ DPR+ + L +
Sbjct: 315 LEDEKQLEKDRRKEALDDFCSLLRNM--NFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSK 372
Query: 564 KDRELLLNERVLPLKR-------AAEEKAQAIRAAAASSFKSML---REKGDITLSSRWS 613
D + + V L+R +++ I +F+++L R + ITL ++W
Sbjct: 373 LDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLRTKWK 432
Query: 614 KVKDILRDDPRY----------------------KSVRHEDREVIFNEY-VRELKAAEEE 650
++ I++DDPRY +++ E R ++ + V ++ +
Sbjct: 433 ELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLENMYREKRNLVLDCLEVLQISVDDTS 492
Query: 651 AEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEA 695
E AR EKLK+RE ++ E+ + R+R K K+A
Sbjct: 493 NIPEIIARL--SEKLKDREESEAVTEDLIEEVVNRLRDKAIHKKA 535
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 119/524 (22%), Positives = 204/524 (38%), Gaps = 96/524 (18%)
Query: 258 STYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317
S Y++ GF + P+ +DW V T D + YYYNS + S W+ P E
Sbjct: 9 SEYDETEGFTSNQEGPSAAPSKT-----VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEE 63
Query: 318 V-TELKKKEDDDTLKEQSVPN-----TNIVIEKGSNAI--SLSSPAVNTGGRDATALRTS 369
+ + +KK KE + + N+ + I + V+ + AL +
Sbjct: 64 LMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKKALSSK 123
Query: 370 SMPGSSS-ALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDK 428
+ A+ I++ D P++ PA S + S+ T+ +Q KDK
Sbjct: 124 IKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQISQGSHKR-----TINFVQQ---KDK 175
Query: 429 LKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPR 488
+ + D E+ +T E KF L V P WE+ + ++
Sbjct: 176 RQKRSNDYQ-------HENYDTYEAAERAFFKF---LDSHNVNPSWTWEQTVRELCDAKG 225
Query: 489 FKAIQSQSARRALFERYV------KTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHS 542
+ ++ R+ F+ Y+ ++ AE+ R K +K IE K S+ I
Sbjct: 226 YYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTK--IRKEFIEMLKS-----SDKIHSY 278
Query: 543 TDYQTFKKKWGSDPRFEALDRK-DRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLR 601
T ++T K ++ S P F A + +++ L E L ++ + R A F S+LR
Sbjct: 279 TLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLR 338
Query: 602 EKGDITLSSRWSKVKDILRDDPRY------KSVRHEDREVIFNEYVRELKAAEEEAEREA 655
+ +RWS + DPRY K + D V F ++V+ L
Sbjct: 339 -NMNFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHL----------- 386
Query: 656 KARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALL----VETIKDPQ 711
ERE K+++++E R+ K R +F+ALL V+ +
Sbjct: 387 -------------EREYILDKQKQKKEKHRIERKNR-----DAFRALLQDLRVQKKITLR 428
Query: 712 ASWTESRPKLEKDPQ-----GRATNADLD-----SSDREKLFRE 745
W E P ++ DP+ G++ + LD D E ++RE
Sbjct: 429 TKWKELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLENMYRE 472
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 32/151 (21%)
Query: 671 EMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ-GRA 729
E +++ +E+++E K RRKEA+ F +LL +P W+ ++ K ++DP+ R
Sbjct: 309 EYKQKLLEDEKQLE----KDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQDPRYTRN 364
Query: 730 TNAD-LDSSDREKLFREHIKTL-----------------YERCAHD-FRGLLAEVITAEA 770
+N L D F +H+K L ER D FR LL ++
Sbjct: 365 SNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDL----- 419
Query: 771 AAQETEDGKTVLNSWSTAKRVLKPEPRYSKM 801
+ T+ W ++K +PRY +
Sbjct: 420 ---RVQKKITLRTKWKELYPIIKDDPRYLNL 447
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B
PE=1 SV=1
Length = 871
Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 102/200 (51%), Gaps = 7/200 (3%)
Query: 448 GETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507
G + +E+ FKE+L+++ V + WE+ + +V DPR+ A+ S ++ F Y
Sbjct: 270 GLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKA 329
Query: 508 TRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRE 567
R +EE++E R K A + + LE+ E + +T Y+ ++ +G + + +DR+
Sbjct: 330 QREKEEKEEARLRAKEAKQTLQHFLEQ-HERMTSTTRYRRAEQTFGELEVWAVVPERDRK 388
Query: 568 LLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRY-- 625
+ ++ + L + +E+A+ +R + KS+L + + WS+ + L D+P +
Sbjct: 389 EVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQ 448
Query: 626 ----KSVRHEDREVIFNEYV 641
+++ ED + F E++
Sbjct: 449 DHQLQNMDKEDALICFEEHI 468
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W+ H G +YYYNA +S +EKP+ K + + + L+ W ++
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELL-----------LSQCPWKEYKSDT 146
Query: 298 GKKYYYNSKMKVSSWQIPSEVTELK 322
GK YYYN++ K S W P ++ +L+
Sbjct: 147 GKPYYYNNQSKESRWTRPKDLDDLE 171
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b
PE=2 SV=2
Length = 870
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 102/200 (51%), Gaps = 7/200 (3%)
Query: 448 GETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507
G + +E+ FKE+L+++ V + WE+ + +V DPR+ A+ S ++ F Y
Sbjct: 270 GLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKA 329
Query: 508 TRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRE 567
R +EE++E R K A + + LE+ E + +T Y+ ++ +G + + ++R+
Sbjct: 330 QREKEEKEEARLRAKEAKQTLQHFLEQ-HERMTSTTRYRRAEQTFGDLEVWAVVPERERK 388
Query: 568 LLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRY-- 625
+ ++ + L + +E+A+ +R + KS+L + + WS+ + L D+P +
Sbjct: 389 EVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQ 448
Query: 626 ----KSVRHEDREVIFNEYV 641
+++ ED + F E++
Sbjct: 449 DQQLQNMDKEDALICFEEHI 468
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W+ H G +YYYNA +S +EKP+ K + + + L+ W ++
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELL-----------LSQCPWKEYKSDT 146
Query: 298 GKKYYYNSKMKVSSWQIPSEVTELK 322
GK YYYN++ + S W P ++ +L+
Sbjct: 147 GKPYYYNNQSQESRWTRPKDLDDLE 171
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 97/421 (23%), Positives = 179/421 (42%), Gaps = 59/421 (14%)
Query: 235 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTD--WAL 292
+ W K +G +YYYN +T +ST+EKP IS E L + W
Sbjct: 1 MSIWKEAKDASGRIYYYNTLTKKSTWEKPKEL-------------ISQEELLLRENGWKA 47
Query: 293 VTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLS 352
T DGK YYYN + +SW IP+ KK E K +V + + N I+L+
Sbjct: 48 AKTADGKVYYYNPTTRETSWTIPAFE---KKVEPIAEQKHDTVSHAQV----NGNRIALT 100
Query: 353 SPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKA 412
+ GR T S ++S L ++++ ++ + ++ S
Sbjct: 101 AGEKQEPGR--TINEEESQYANNSKLLNVRRRTKEEAEKEFITMLKENQVDSTWSFSRII 158
Query: 413 VEVTVKGLQNENTKDK--LKDINGDGTMSDSSSDS---EDGETGPTKEECIIKFKEMLKE 467
E+ + + D K + +S+ S+D E ET KE F++ML+
Sbjct: 159 SELGTRDPRYWMVDDDPLWKKEMFEKYLSNRSADQLLKEHNETSKFKE----AFQKMLQN 214
Query: 468 RG-VAPFSKWEKELPKIVFDPRFK-AIQSQSARRALFERYVKTRAEEERKEKRAAQKAAI 525
+ +++W I +P +K ++ ++ +R F+ Y+ T + +++ K+ + A+
Sbjct: 215 NSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKKKLKTQAL 274
Query: 526 EGFKQLLEEV-----SEDI---DHSTDYQTF--KKKWGSDPRFEALDRKDRELLLNER-- 573
+ ++ L + SE ++ F K++ ++ F+ L +D +LNE
Sbjct: 275 KELREYLNGIITTSSSETFITWQQLLNHYVFDKSKRYMANRHFKVLTHED---VLNEYLK 331
Query: 574 -VLPLKRAAEEKAQAIRA-------AAASSFKSMLREK-GDITLSSRWSKVKDILRDDPR 624
V ++ + K +R A +FKS+LRE I ++RWS + ++ DPR
Sbjct: 332 IVNTIENDLQNKLNELRLRNYTRDRIARDNFKSLLREVPIKIKANTRWSDIYPHIKSDPR 391
Query: 625 Y 625
+
Sbjct: 392 F 392
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
Length = 398
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W + G YYYN TGES +EKP GF+G S TG+ W + D
Sbjct: 140 WVQGLSPEGYTYYYNTKTGESQWEKPKGFQGN-----------SKTSHTGSVWVEGVSED 188
Query: 298 GKKYYYNSKMKVSSWQIP 315
G YYYN++ VS+W+ P
Sbjct: 189 GHTYYYNTQTGVSTWEKP 206
>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1
Length = 376
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W T G YYY+ ++G S +EKP GF+G+ K V+ T W + D
Sbjct: 128 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVK-----------TVWVEGLSED 176
Query: 298 GKKYYYNSKMKVSSWQIPSEV 318
G YYYN++ S W+ P +
Sbjct: 177 GFTYYYNTETGESRWEKPDDF 197
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 237 AWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266
W ++ G YYYN TGES +EKP F
Sbjct: 168 VWVEGLSEDGFTYYYNTETGESRWEKPDDF 197
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 237 AWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTN 296
W T G YYY+ +TG S +EKP GF+G K + W +
Sbjct: 128 GWVEGVTADGHCYYYDLITGASQWEKPEGFQGNLKKTAAKAV-----------WVEGLSE 176
Query: 297 DGKKYYYNSKMKVSSWQIPSEV 318
DG YYYN++ S W+ P +
Sbjct: 177 DGYTYYYNTETGESKWEKPEDF 198
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1
Length = 374
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 238 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297
W T G YYY+ VTG S +EKP GF+G K + W + D
Sbjct: 127 WVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAI-----------WVEGLSED 175
Query: 298 GKKYYYNSKMKVSSWQIPSEV 318
G YYYN++ S W+ P +
Sbjct: 176 GYTYYYNTETGESKWEKPDDF 196
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 559 EALDRKDRELLLNERVLPLKRAAEEKAQAI-RAAAASSFKSMLREKGDITLSSRWSKVKD 617
E L R+++E L E+ L++ E K Q R + K +E R K ++
Sbjct: 2751 EELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQE--------RLQKEEE 2802
Query: 618 ILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEA-EREAKARREEQEKLKEREREMRKRK 676
+ R + + + E +E + E ELK E+E ++E +R+EQE+L ++E E+ KR+
Sbjct: 2803 LKRQEQ--ERLEREKQEQLQKE--EELKRQEQERLQKEEALKRQEQERL-QKEEEL-KRQ 2856
Query: 677 EREEQEMERVRLKVRRKEAVTSFQALLVETIKD 709
E+E E +++ L R + + ++ +V+ IKD
Sbjct: 2857 EQERLERKKIELAEREQHIKSKLESDMVKIIKD 2889
Score = 40.8 bits (94), Expect = 0.048, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 15/116 (12%)
Query: 643 ELKAAEEEA-EREAKARREEQEKLKE-----REREMRKRKEREEQEMERVRLKVRRKEAV 696
ELK E+E ++E +R+EQE+L++ R+ + R +E++EQ + LK + +E +
Sbjct: 2774 ELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERL 2833
Query: 697 TSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 752
+AL K + + +L++ Q R ++ ++RE +HIK+ E
Sbjct: 2834 QKEEAL-----KRQEQERLQKEEELKRQEQERLERKKIELAERE----QHIKSKLE 2880
Score = 37.0 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 559 EALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDI 618
E L R+++E L E L KR +E+ Q + + REK ++
Sbjct: 2773 EELKRQEQERLQKEEAL--KRQEQERLQKEEELKRQEQERLEREK------------QEQ 2818
Query: 619 LRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKER 678
L+ + K R E + E ++ + +E ++E + +R+EQE+L+ ++ E+ +R++
Sbjct: 2819 LQKEEELK--RQEQERLQKEEALK--RQEQERLQKEEELKRQEQERLERKKIELAEREQH 2874
Query: 679 EEQEMERVRLKVRRKE 694
+ ++E +K+ + E
Sbjct: 2875 IKSKLESDMVKIIKDE 2890
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 646 AAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQA 701
AAEEEA R+ KA EE E+LK + E R+ +ER EQE R +L++ ++ A QA
Sbjct: 2132 AAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESAR-QLQLAQEAAQKRLQA 2186
>sp|A8WM57|EIF3A_CAEBR Eukaryotic translation initiation factor 3 subunit A
OS=Caenorhabditis briggsae GN=egl-45 PE=3 SV=1
Length = 1098
Score = 33.9 bits (76), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 15/123 (12%)
Query: 650 EAEREAKARREEQEKLKEREREM-RKRKEREEQEMER--VRLKVRRKEAVTSFQALL--- 703
+A+RE AR EE ++L E+ +E RKRK+ E++E+++ R ++ + + +QA++
Sbjct: 608 QAKREEAARAEEMKRLDEQNKESERKRKQAEQEEIQKKIKRDQLHKMQQNVIYQAIIKEK 667
Query: 704 -VETIK--DPQASWTESRPKLEKDPQGRA-TNADLDSSDREKLFREHIKTLYERCAHDFR 759
+E + DP+ E R +L+K+ RA T L +EK F HI+ L+ ++ R
Sbjct: 668 GLEQFRDMDPEQVLREQRERLDKE---RAETQRRL--QQQEKKFDHHIRALHLEEMNERR 722
Query: 760 GLL 762
++
Sbjct: 723 AVM 725
>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1
Length = 4473
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 646 AAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQA 701
AAEEEA R+ KA EE E+LK + E R+ +ER EQE R +L++ ++ A QA
Sbjct: 1921 AAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESAR-QLQLAQEAAQKRLQA 1975
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.125 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,734,940
Number of Sequences: 539616
Number of extensions: 15420231
Number of successful extensions: 125382
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 3041
Number of HSP's that attempted gapping in prelim test: 84127
Number of HSP's gapped (non-prelim): 20953
length of query: 857
length of database: 191,569,459
effective HSP length: 126
effective length of query: 731
effective length of database: 123,577,843
effective search space: 90335403233
effective search space used: 90335403233
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)