Query 003014
Match_columns 857
No_of_seqs 330 out of 1171
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 15:19:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003014.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003014hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0155 Transcription factor C 100.0 7.7E-83 1.7E-87 695.6 46.4 594 138-826 2-600 (617)
2 COG5104 PRP40 Splicing factor 100.0 5.3E-48 1.1E-52 414.9 26.7 455 234-814 13-482 (590)
3 KOG0155 Transcription factor C 100.0 1.1E-33 2.4E-38 310.4 25.0 258 522-833 242-549 (617)
4 KOG0152 Spliceosomal protein F 100.0 6.7E-29 1.4E-33 281.9 18.7 334 450-824 21-361 (463)
5 COG5104 PRP40 Splicing factor 99.9 3.1E-24 6.8E-29 232.1 25.1 256 522-824 146-427 (590)
6 KOG0152 Spliceosomal protein F 99.7 4.5E-17 9.7E-22 185.8 14.8 315 453-826 91-434 (463)
7 KOG4271 Rho-GTPase activating 99.3 2.1E-11 4.6E-16 143.4 16.0 251 521-824 51-337 (1100)
8 PF01846 FF: FF domain; Inter 99.1 1E-10 2.2E-15 94.7 5.5 50 456-505 1-51 (51)
9 smart00441 FF Contains two con 99.0 2E-10 4.3E-15 94.3 4.4 52 456-507 2-54 (55)
10 KOG1924 RhoA GTPase effector D 98.7 5.7E-08 1.2E-12 113.1 11.5 29 482-510 840-871 (1102)
11 PF00397 WW: WW domain; Inter 98.7 9.4E-09 2E-13 74.7 2.9 30 234-263 1-31 (31)
12 PF01846 FF: FF domain; Inter 98.7 5.1E-08 1.1E-12 78.9 6.2 50 695-746 2-51 (51)
13 smart00441 FF Contains two con 98.6 4.1E-08 9E-13 80.5 5.0 52 591-642 2-54 (55)
14 KOG1924 RhoA GTPase effector D 98.6 1.8E-07 4E-12 109.0 11.4 16 184-199 589-604 (1102)
15 PF00397 WW: WW domain; Inter 98.5 1.2E-07 2.7E-12 68.9 3.9 28 288-315 3-31 (31)
16 smart00456 WW Domain with 2 co 98.5 1.6E-07 3.5E-12 68.5 4.0 31 234-264 1-31 (32)
17 KOG4271 Rho-GTPase activating 98.4 1.7E-06 3.6E-11 103.1 13.8 180 457-646 54-265 (1100)
18 cd00201 WW Two conserved trypt 98.4 3.3E-07 7.2E-12 66.2 3.9 30 235-264 1-30 (31)
19 smart00456 WW Domain with 2 co 98.2 1.1E-06 2.4E-11 64.1 3.8 29 288-316 3-31 (32)
20 cd00201 WW Two conserved trypt 98.1 3.1E-06 6.7E-11 61.1 3.8 29 288-316 2-30 (31)
21 KOG1891 Proline binding protei 97.7 5.5E-05 1.2E-09 77.6 5.3 71 230-317 90-160 (271)
22 KOG3259 Peptidyl-prolyl cis-tr 97.7 2.1E-05 4.5E-10 75.9 2.1 37 230-266 3-40 (163)
23 KOG4849 mRNA cleavage factor I 97.6 0.00083 1.8E-08 73.0 14.0 17 87-103 234-250 (498)
24 KOG3259 Peptidyl-prolyl cis-tr 97.2 0.00017 3.7E-09 69.8 1.6 33 284-317 6-39 (163)
25 KOG3671 Actin regulatory prote 97.1 0.0057 1.2E-07 69.7 13.8 24 146-171 423-446 (569)
26 KOG0307 Vesicle coat complex C 97.0 0.021 4.6E-07 70.7 17.5 10 17-26 724-733 (1049)
27 KOG2893 Zn finger protein [Gen 96.9 0.0058 1.3E-07 63.6 10.0 28 99-126 115-142 (341)
28 KOG3671 Actin regulatory prote 96.8 0.032 6.9E-07 63.9 15.7 9 89-97 351-359 (569)
29 KOG0119 Splicing factor 1/bran 96.7 0.081 1.8E-06 60.7 18.4 23 12-35 326-349 (554)
30 KOG1984 Vesicle coat complex C 96.7 0.057 1.2E-06 65.5 17.7 11 295-305 355-365 (1007)
31 KOG0307 Vesicle coat complex C 96.4 0.1 2.2E-06 65.0 17.6 15 166-180 832-846 (1049)
32 KOG1984 Vesicle coat complex C 96.4 0.14 3.1E-06 62.3 18.3 15 297-311 371-385 (1007)
33 KOG0119 Splicing factor 1/bran 96.2 0.19 4.2E-06 57.8 17.3 10 50-59 384-393 (554)
34 KOG2893 Zn finger protein [Gen 96.0 0.11 2.3E-06 54.5 12.7 9 452-460 322-330 (341)
35 KOG0132 RNA polymerase II C-te 95.7 0.3 6.6E-06 58.8 16.7 11 120-130 645-655 (894)
36 KOG4672 Uncharacterized conser 94.4 1.4 3E-05 49.9 16.0 14 453-466 471-484 (487)
37 KOG0940 Ubiquitin protein liga 93.7 0.092 2E-06 59.4 5.6 83 233-318 60-146 (358)
38 KOG4849 mRNA cleavage factor I 93.0 2 4.3E-05 47.7 13.9 10 129-138 264-273 (498)
39 KOG0391 SNF2 family DNA-depend 92.5 2 4.3E-05 54.4 14.5 29 153-181 1898-1926(1958)
40 KOG1985 Vesicle coat complex C 92.5 2.4 5.2E-05 52.0 14.9 12 806-817 856-867 (887)
41 KOG1923 Rac1 GTPase effector F 90.8 0.84 1.8E-05 55.2 8.8 37 709-751 691-727 (830)
42 KOG1830 Wiskott Aldrich syndro 89.9 19 0.00042 41.2 17.8 9 118-126 335-343 (518)
43 PHA03378 EBNA-3B; Provisional 88.3 9.1 0.0002 46.1 14.4 7 193-199 812-818 (991)
44 KOG0150 Spliceosomal protein F 87.8 0.29 6.2E-06 53.3 1.8 37 231-267 146-182 (336)
45 PF03154 Atrophin-1: Atrophin- 87.4 39 0.00085 42.7 19.6 29 456-494 549-577 (982)
46 KOG1985 Vesicle coat complex C 87.2 6.5 0.00014 48.4 12.7 17 293-309 337-353 (887)
47 KOG0150 Spliceosomal protein F 87.1 0.5 1.1E-05 51.5 3.3 52 256-318 130-181 (336)
48 KOG3209 WW domain-containing p 85.0 1.5 3.3E-05 52.6 6.0 86 232-319 131-255 (984)
49 KOG4264 Nucleo-cytoplasmic pro 83.5 14 0.0003 43.3 12.5 8 244-252 652-659 (694)
50 KOG2932 E3 ubiquitin ligase in 82.9 35 0.00077 37.8 14.6 13 112-124 285-297 (389)
51 PF03154 Atrophin-1: Atrophin- 81.7 71 0.0015 40.6 18.3 33 710-742 758-798 (982)
52 KOG0260 RNA polymerase II, lar 80.8 75 0.0016 41.1 18.0 9 47-55 1457-1465(1605)
53 KOG4307 RNA binding protein RB 80.7 11 0.00023 45.6 10.6 27 161-187 244-270 (944)
54 KOG3161 Predicted E3 ubiquitin 79.3 19 0.00042 43.2 12.0 60 88-153 432-491 (861)
55 KOG0905 Phosphoinositide 3-kin 76.4 14 0.0003 47.3 10.2 8 120-127 147-154 (1639)
56 KOG4592 Uncharacterized conser 74.7 50 0.0011 39.8 13.6 13 711-723 633-645 (728)
57 KOG1891 Proline binding protei 74.4 2.5 5.4E-05 44.4 2.8 33 284-317 93-125 (271)
58 PRK14959 DNA polymerase III su 73.7 23 0.0005 43.3 11.2 10 233-242 491-500 (624)
59 KOG3209 WW domain-containing p 71.8 4.7 0.0001 48.7 4.6 80 230-317 219-300 (984)
60 KOG2236 Uncharacterized conser 71.0 16 0.00035 42.4 8.4 20 105-124 407-427 (483)
61 KOG3514 Neurexin III-alpha [Si 66.9 29 0.00063 44.1 9.9 48 26-73 1384-1432(1591)
62 KOG0608 Warts/lats-like serine 65.7 2.7E+02 0.0059 34.4 17.1 21 146-166 302-322 (1034)
63 PF12905 Glyco_hydro_101: Endo 64.5 2.6 5.6E-05 48.3 0.6 33 289-321 369-406 (425)
64 KOG1450 Predicted Rho GTPase-a 63.9 11 0.00024 45.7 5.6 83 234-317 269-357 (650)
65 KOG0702 Predicted GTPase-activ 63.3 1.9E+02 0.0042 34.2 15.0 16 173-188 466-481 (524)
66 KOG4822 Predicted nuclear memb 63.1 94 0.002 40.1 13.1 23 96-118 1728-1750(1906)
67 PTZ00234 variable surface prot 62.0 43 0.00093 39.3 9.8 31 136-171 323-353 (433)
68 KOG3753 Circadian clock protei 61.6 57 0.0012 40.8 10.9 18 477-495 1024-1041(1114)
69 KOG0162 Myosin class I heavy c 60.9 1.4E+02 0.0031 36.9 13.8 13 230-242 1078-1090(1106)
70 KOG2391 Vacuolar sorting prote 59.8 25 0.00054 39.5 7.0 19 40-58 66-84 (365)
71 COG5178 PRP8 U5 snRNP spliceos 59.8 8.1 0.00018 48.9 3.6 24 232-255 127-156 (2365)
72 PF07271 Cytadhesin_P30: Cytad 59.3 1.4E+02 0.0031 32.6 12.3 11 22-32 156-166 (279)
73 KOG1925 Rac1 GTPase effector F 58.9 16 0.00034 42.7 5.5 12 523-534 543-554 (817)
74 KOG1960 Predicted RNA-binding 58.4 99 0.0021 35.5 11.3 15 199-216 487-501 (531)
75 PF04625 DEC-1_N: DEC-1 protei 58.1 41 0.00088 37.4 8.1 22 561-582 332-354 (407)
76 KOG3753 Circadian clock protei 58.0 1E+02 0.0022 38.8 12.1 7 244-250 921-927 (1114)
77 KOG0391 SNF2 family DNA-depend 56.5 3.6E+02 0.0077 35.7 16.5 19 137-155 1824-1842(1958)
78 KOG3546 Collagens (type XV) [E 55.1 2.6E+02 0.0057 34.1 14.4 17 140-156 830-846 (1167)
79 KOG4307 RNA binding protein RB 55.1 1.1E+02 0.0025 37.5 11.6 23 39-61 176-198 (944)
80 KOG0905 Phosphoinositide 3-kin 55.0 63 0.0014 41.9 9.9 9 133-141 166-174 (1639)
81 KOG2375 Protein interacting wi 54.9 3.2E+02 0.0069 34.3 15.7 6 32-37 529-534 (756)
82 KOG1029 Endocytic adaptor prot 54.5 5.4E+02 0.012 32.4 18.1 8 713-720 412-419 (1118)
83 KOG0608 Warts/lats-like serine 50.3 2.1E+02 0.0045 35.4 12.7 13 632-644 721-733 (1034)
84 KOG2375 Protein interacting wi 49.7 99 0.0021 38.5 10.4 11 128-138 584-594 (756)
85 PF03276 Gag_spuma: Spumavirus 47.8 84 0.0018 37.5 9.0 16 191-206 290-305 (582)
86 KOG3161 Predicted E3 ubiquitin 47.5 2.3E+02 0.005 34.7 12.5 21 22-42 426-446 (861)
87 KOG4334 Uncharacterized conser 47.4 17 0.00036 42.5 3.3 35 283-318 153-187 (650)
88 PF06102 DUF947: Domain of unk 47.2 1.7E+02 0.0037 29.9 10.3 33 617-649 30-65 (168)
89 KOG2129 Uncharacterized conser 46.7 3.7E+02 0.008 31.3 13.4 9 638-646 252-260 (552)
90 KOG1049 Polyadenylation factor 43.5 6.7E+02 0.014 30.3 15.5 32 6-39 199-230 (538)
91 KOG3168 U1 snRNP component [Tr 43.3 1.6E+02 0.0034 30.0 8.9 14 66-79 97-110 (177)
92 PRK11138 outer membrane biogen 43.0 31 0.00066 39.4 4.7 65 241-317 125-189 (394)
93 KOG4786 Ubinuclein, nuclear pr 42.9 1.4E+02 0.003 36.8 9.8 11 110-120 1022-1032(1136)
94 COG5180 PBP1 Protein interacti 41.4 1.9E+02 0.004 34.0 10.3 13 25-37 431-443 (654)
95 KOG1920 IkappaB kinase complex 41.3 5.4E+02 0.012 33.9 15.1 39 609-647 908-952 (1265)
96 KOG3248 Transcription factor T 40.8 1.8E+02 0.0038 32.9 9.6 31 220-250 211-242 (421)
97 PF07960 CBP4: CBP4; InterPro 40.2 3.4E+02 0.0075 26.6 10.5 69 475-562 7-81 (128)
98 TIGR03300 assembly_YfgL outer 39.7 51 0.0011 37.1 5.8 61 243-315 72-132 (377)
99 COG5180 PBP1 Protein interacti 39.7 1.6E+02 0.0035 34.5 9.5 7 26-32 478-484 (654)
100 TIGR03300 assembly_YfgL outer 39.1 37 0.0008 38.2 4.6 64 241-316 110-173 (377)
101 PLN03162 golden-2 like transcr 38.8 2E+02 0.0044 32.7 9.8 9 131-139 372-380 (526)
102 PRK10263 DNA translocase FtsK; 37.0 2.7E+02 0.0058 37.2 11.9 12 460-471 893-904 (1355)
103 KOG4217 Nuclear receptors of t 36.9 2E+02 0.0043 34.0 9.6 14 46-59 142-155 (605)
104 KOG4334 Uncharacterized conser 36.9 27 0.00059 40.8 2.9 41 230-270 151-191 (650)
105 PF05518 Totivirus_coat: Totiv 36.9 3.5E+02 0.0076 33.9 12.3 7 96-102 683-689 (759)
106 KOG1546 Metacaspase involved i 36.7 49 0.0011 37.1 4.8 12 94-105 9-20 (362)
107 KOG1676 K-homology type RNA bi 36.4 2.5E+02 0.0055 34.0 10.7 12 115-126 449-460 (600)
108 KOG1029 Endocytic adaptor prot 36.2 1E+03 0.022 30.2 20.8 12 288-299 233-245 (1118)
109 KOG3600 Thyroid hormone recept 35.8 1.4E+02 0.0031 39.0 8.8 49 113-166 864-912 (2238)
110 KOG4264 Nucleo-cytoplasmic pro 35.3 4.5E+02 0.0098 31.5 12.2 14 51-64 469-482 (694)
111 KOG4364 Chromatin assembly fac 34.8 9.6E+02 0.021 29.8 15.0 12 564-575 246-257 (811)
112 PRK00247 putative inner membra 34.2 7.4E+02 0.016 29.2 14.0 15 458-472 88-102 (429)
113 PRK07764 DNA polymerase III su 34.2 4E+02 0.0087 34.1 12.8 12 456-467 800-811 (824)
114 KOG2133 Transcriptional corepr 33.6 7.8E+02 0.017 31.9 14.4 16 53-68 513-528 (1229)
115 PTZ00436 60S ribosomal protein 32.5 5.4E+02 0.012 28.8 11.6 43 598-648 107-149 (357)
116 PF13360 PQQ_2: PQQ-like domai 32.0 40 0.00087 34.8 3.1 60 243-314 43-102 (238)
117 KOG2047 mRNA splicing factor [ 31.8 5.9E+02 0.013 31.6 12.7 74 544-623 70-152 (835)
118 KOG1920 IkappaB kinase complex 31.2 1.1E+03 0.024 31.4 15.5 149 476-646 911-1079(1265)
119 smart00564 PQQ beta-propeller 30.8 52 0.0011 23.3 2.7 23 293-315 11-33 (33)
120 COG5178 PRP8 U5 snRNP spliceos 30.8 38 0.00083 43.3 3.0 15 588-602 713-727 (2365)
121 KOG0144 RNA-binding protein CU 30.4 1.1E+02 0.0025 35.5 6.4 33 234-266 451-483 (510)
122 KOG1676 K-homology type RNA bi 29.6 4.3E+02 0.0092 32.2 11.1 30 114-144 406-435 (600)
123 KOG2072 Translation initiation 29.2 1.3E+03 0.029 29.5 19.2 40 492-533 662-701 (988)
124 KOG4286 Dystrophin-like protei 28.4 23 0.00049 43.4 0.6 31 234-264 350-380 (966)
125 PRK11138 outer membrane biogen 27.9 90 0.002 35.6 5.4 60 243-316 263-322 (394)
126 KOG3895 Synaptic vesicle prote 27.6 4.1E+02 0.0089 30.4 9.9 7 136-142 432-438 (488)
127 PF15449 Retinal: Retinal prot 27.5 1.1E+03 0.024 31.1 14.4 17 91-107 1010-1026(1287)
128 KOG4592 Uncharacterized conser 27.4 2.2E+02 0.0049 34.6 8.3 16 145-160 187-202 (728)
129 KOG4339 RPEL repeat-containing 27.4 8.5E+02 0.019 29.3 12.8 15 154-168 227-241 (533)
130 KOG3600 Thyroid hormone recept 27.2 5E+02 0.011 34.4 11.4 18 173-190 953-970 (2238)
131 KOG2133 Transcriptional corepr 26.5 9.7E+02 0.021 31.1 13.6 16 38-53 581-596 (1229)
132 KOG3294 WW domain binding prot 26.2 6.7E+02 0.015 27.2 10.8 15 22-36 107-121 (261)
133 KOG3878 Protein involved in ma 26.2 4E+02 0.0086 30.1 9.4 15 589-603 103-117 (469)
134 PF09770 PAT1: Topoisomerase I 26.0 23 0.00049 44.9 0.0 6 300-305 387-392 (808)
135 PF07777 MFMR: G-box binding p 25.7 2.1E+02 0.0045 29.9 6.8 13 128-140 57-70 (189)
136 PRK14086 dnaA chromosomal repl 25.3 1.4E+03 0.03 28.4 17.4 14 711-724 569-582 (617)
137 KOG2072 Translation initiation 25.3 1.5E+03 0.033 28.9 21.3 10 497-506 568-577 (988)
138 KOG2391 Vacuolar sorting prote 24.9 2E+02 0.0043 32.6 6.9 8 117-124 185-192 (365)
139 KOG2070 Guanine nucleotide exc 24.9 1.8E+02 0.0038 34.5 6.7 9 527-535 648-656 (661)
140 PF09770 PAT1: Topoisomerase I 24.9 24 0.00053 44.6 0.0 8 713-720 711-718 (808)
141 KOG4364 Chromatin assembly fac 24.4 3.9E+02 0.0085 32.9 9.6 6 564-569 243-248 (811)
142 PF09301 DUF1970: Domain of un 24.2 34 0.00073 30.8 0.7 31 146-176 38-68 (117)
143 PHA03369 capsid maturational p 24.0 3E+02 0.0065 33.5 8.5 12 146-157 423-434 (663)
144 KOG3248 Transcription factor T 23.8 2.9E+02 0.0064 31.2 7.9 11 161-171 149-159 (421)
145 KOG3537 Adaptor protein NUMB [ 23.5 1.9E+02 0.0041 33.8 6.5 14 134-147 493-506 (543)
146 cd00216 PQQ_DH Dehydrogenases 23.3 1.1E+02 0.0025 36.1 5.2 69 244-315 364-433 (488)
147 KOG3771 Amphiphysin [Intracell 23.1 1.3E+03 0.028 27.4 13.5 15 207-221 393-407 (460)
148 KOG4594 Sequence-specific sing 22.5 4.4E+02 0.0096 29.2 8.8 86 116-206 94-179 (354)
149 PF15449 Retinal: Retinal prot 22.5 1.4E+03 0.03 30.2 14.0 14 14-27 980-993 (1287)
150 KOG1365 RNA-binding protein Fu 22.1 6.4E+02 0.014 29.2 10.2 6 135-140 422-427 (508)
151 PF05616 Neisseria_TspB: Neiss 22.0 7.3E+02 0.016 29.6 10.9 22 12-33 282-303 (502)
152 KOG3837 Uncharacterized conser 22.0 3.4E+02 0.0075 31.7 8.2 18 42-59 52-69 (523)
153 KOG0940 Ubiquitin protein liga 21.7 51 0.0011 37.7 1.8 32 235-266 115-146 (358)
154 KOG4302 Microtubule-associated 21.4 1.6E+03 0.036 27.9 26.1 81 564-646 159-240 (660)
155 KOG3537 Adaptor protein NUMB [ 21.0 3.9E+02 0.0084 31.4 8.3 12 117-128 438-449 (543)
156 KOG2047 mRNA splicing factor [ 20.2 1E+03 0.022 29.7 11.8 135 475-626 70-227 (835)
157 KOG1925 Rac1 GTPase effector F 20.1 1.8E+02 0.0038 34.5 5.5 15 136-150 232-246 (817)
158 PF02731 SKIP_SNW: SKIP/SNW do 20.1 5.3E+02 0.011 26.2 8.2 21 635-655 105-125 (158)
159 PF13360 PQQ_2: PQQ-like domai 20.0 1.6E+02 0.0034 30.2 5.0 62 239-313 175-237 (238)
No 1
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=7.7e-83 Score=695.55 Aligned_cols=594 Identities=31% Similarity=0.473 Sum_probs=473.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCcc
Q 003014 138 PQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKK 217 (857)
Q Consensus 138 p~~~~~~~pp~~~~~~~~~g~~~~p~~g~~~p~~~~p~~~ppg~~~~~~~~~~~~~~~~g~q~~~~~~~~~~~~~~~~~~ 217 (857)
|.|.|.+.|| +..+.|++|.|.|-.+.+ ++.....+-|.+...++..|++.. -||.+|.+...
T Consensus 2 p~~~~~~~ap--s~wtef~ap~G~pyy~ns-~t~~st~ekP~~l~~~~s~~~~~~--~p~~sp~~~~~------------ 64 (617)
T KOG0155|consen 2 PHGQIPMSAP--SGWTEFKAPDGIPYYWNS-ETLESTWEKPSFLEKNESSGVTAS--EPSLSPAIAEA------------ 64 (617)
T ss_pred CCCCCCCCCC--CCCccCCCCCCcceeccc-ccccchhhCchhhhhccccCcccc--CCccCcchhhh------------
Confidence 4555556665 667788888888988887 444466777888888887765522 23332111111
Q ss_pred ccccccccccCCCCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCC
Q 003014 218 EHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 297 (857)
Q Consensus 218 ~~~~~~~t~~~~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~ 297 (857)
+...|+.+..+.|-.||||..+ +.+.|..+.+...+++.+|.+.. +++|++||.|||+|
T Consensus 65 ----------------~~~t~~~~~~e~~~~k~~~s~~---~~ee~~~~~~~~kk~p~rPi~~~--~ipgtdWcVVwTgD 123 (617)
T KOG0155|consen 65 ----------------QQKTSSNAFGENPSEKLFVSEN---AAEERKNSRAARKKLPDRPIFKK--PIPGTDWCVVWTGD 123 (617)
T ss_pred ----------------hhhhhhccCCcchHHHHHhCcc---hhhcCCCcccccccCCCCCCCCC--CCCCCCeEEEEeCC
Confidence 2457888999999999999988 88999888887777777766554 58999999999999
Q ss_pred CceEEEeCCCCeeeccCChhhHHhhhhcchhhhhhccCCCcchhhcccCCcccCCCCCccCCCCCccccccCCCCCCchh
Q 003014 298 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSA 377 (857)
Q Consensus 298 Gr~YyyN~~T~~S~We~P~e~~~~~~~~~~~~~ke~~~p~~~~~~e~~~~~~~~~~pa~~~~~~~~~~~~~~~~~~~~sa 377 (857)
||+||||+.|+.|+|++|.++.+. .+.+.+. +.|... .++.++....+.+|+...++.++.... +..
T Consensus 124 ~RvFFyNpktk~S~We~P~dlk~r---~dvdkii--s~Ppsk-k~eees~kt~~eap~~s~~~~~~aed~-------~~~ 190 (617)
T KOG0155|consen 124 NRVFFYNPKTKLSVWERPLDLKGR---LDVDKII--SKPPSK-KQEEESKKTNHEAPHESRHLQTEAEDP-------SGK 190 (617)
T ss_pred CceEEeCCccccccccCchhhccc---ccHHHHh--cCCcch-hhhhhcccccCCCcchhccccchhccC-------cch
Confidence 999999999999999999998763 3333322 223221 233445555667777666655442211 113
Q ss_pred HHHHHhhhccCCCCCCCCCCCCccccccc-cCCCccchhhhcccccccchhhhcccCCCCCCCCCCCCCCCCCCCCCHHH
Q 003014 378 LDLIKKKLQDSGTPTASPAPVSSAAATSE-SNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEE 456 (857)
Q Consensus 378 ~~~~kk~~~~~~~~~~sp~~~~~~~~~~e-~~~~~~~~~t~~~~~~~~~~~k~kd~~~~~~~s~~ssdseee~~~~tkEE 456 (857)
.+....+...++.++..- ...+ .++. + ..+.....+++.+..++...+++||
T Consensus 191 ~d~~~sEe~~E~~~vk~k-------k~ke~~~~~---------l-----------q~e~~~~~eas~da~~e~~~vplEe 243 (617)
T KOG0155|consen 191 EDVSYSEEFYEDSDVKEK-------KEKEHSAGE---------L-----------QPEQLAAEEASYDAAEERTNVPLEE 243 (617)
T ss_pred hhhhHHHhhhccCchhhh-------hhccccccC---------C-----------CccccchhhhccccccccccCCHHH
Confidence 333333333444332210 0000 0000 0 0111223344567778889999999
Q ss_pred HHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003014 457 CIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVS 536 (857)
Q Consensus 457 a~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~LL~e~~ 536 (857)
+..+|++||+|+||++|++|+.++++|++||||.+|.+. +|++||+.||+.++++++.+++.+.+.|+++|..||.++
T Consensus 244 r~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s~-~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~- 321 (617)
T KOG0155|consen 244 RRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSG-ERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEA- 321 (617)
T ss_pred HHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999999986 999999999999999999999999999999999999997
Q ss_pred cCCCCCccHHHHHHHhcCCchhhcCCH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHH
Q 003014 537 EDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKV 615 (857)
Q Consensus 537 ~~i~~~t~W~e~~~k~~~Dprfkal~~-~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~T~W~ev 615 (857)
.++..++|+.|..+|++|+||++++. +||+.||++||..|++.++++.+..+++++.+|..||.+. .|+..+.|+++
T Consensus 322 -~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~t 399 (617)
T KOG0155|consen 322 -ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSKT 399 (617)
T ss_pred -cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhHH
Confidence 47888999999999999999999998 9999999999999999999999999999999999999998 49999999999
Q ss_pred HHHhccCcccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003014 616 KDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKE 694 (857)
Q Consensus 616 ~~~L~~DpRy~~l~~-~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~ree~e~er~R~~~rr~e 694 (857)
+..|.+++||++|+. ++|+.||.+||.+|..+...+....+ .++.+++|++|+||+++++.+|.+|.+|+|+++++.|
T Consensus 400 k~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er-~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e 478 (617)
T KOG0155|consen 400 KDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQER-EKRLEAQLREREREVEKELGNQLRERTREREKQKRGE 478 (617)
T ss_pred HHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 89999999999999887553332222 3345677999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 003014 695 AVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQE 774 (857)
Q Consensus 695 a~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~~L~ek~~~~Fr~LL~e~~~~~~~~~~ 774 (857)
|.+.|++||.|+|+++..+|.|.+++|++|+|| +.+..|+..++++||+|||+.|.++|+++|+.||.++.
T Consensus 479 ~~~~y~all~d~irs~e~sw~e~rrilrkd~r~-as~~~le~~~keklf~dhiksl~~k~re~f~qllde~~-------- 549 (617)
T KOG0155|consen 479 AEDTYRALLIDLIRSTENSWHEARRILRKDERY-ASCDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEHE-------- 549 (617)
T ss_pred HHHHHHHHHHHHHhCcccchHHhHHHhhccccc-ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Confidence 999999999999999999999999999999994 66789999999999999999999999999999999985
Q ss_pred hccCCcccCCHHHHHHhcCCCccccCCChhHH--HHHHHHHHHHHHHhhhhccc
Q 003014 775 TEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER--EALWRRHAEEIQRKHKSSLD 826 (857)
Q Consensus 775 ~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~~eR--e~lf~~~ie~l~~~~k~~~~ 826 (857)
.||+.+.|.+++++|+++++|+++.+++| +.-|++|++...+-.+..|+
T Consensus 550 ---~it~~~~w~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~~~~~~~~d~fr 600 (617)
T KOG0155|consen 550 ---KITPMMRWREAKKIIQEEETFVKIASSERKVERDFRDWQERRHDHLTDEFR 600 (617)
T ss_pred ---hcchHHHHHHhhHHHhhhHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999998887765 45566666665555544443
No 2
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=5.3e-48 Score=414.92 Aligned_cols=455 Identities=22% Similarity=0.328 Sum_probs=319.7
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeecc
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQ 313 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We 313 (857)
..+.|.|.+++|||+||||.+|+.|+|+||.+|....+. .+.-.+|+++.|.||++||||+.|++|+|.
T Consensus 13 ~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~-----------~l~~~~Wke~~TadGkvyyyN~~TREs~W~ 81 (590)
T COG5104 13 ARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEE-----------DLDVDPWKECRTADGKVYYYNSITRESRWK 81 (590)
T ss_pred HHHHHHHhhCCCCceEEEecccccccccChHHHhcchHh-----------hhchhhHHHHhhcCCceEEecCcccccccc
Confidence 456899999999999999999999999999888755443 344568999999999999999999999999
Q ss_pred CChhhHHhhhhcchhhhhhccCCCcchhhcccCCcccCCCCCccCCCCCccccccCCCCCCchhHHHHHhhhccCCCCCC
Q 003014 314 IPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTA 393 (857)
Q Consensus 314 ~P~e~~~~~~~~~~~~~ke~~~p~~~~~~e~~~~~~~~~~pa~~~~~~~~~~~~~~~~~~~~sa~~~~kk~~~~~~~~~~ 393 (857)
+|.+.+....-++. . +.. .+-....-+.+++..+... +.+...- ...
T Consensus 82 iP~e~KkVe~~~eQ-K---~~~--------~S~i~~ngn~~ait~~e~~------------eP~~~~~-~~~-------- 128 (590)
T COG5104 82 IPPERKKVEPIAEQ-K---HDE--------RSMIGGNGNDMAITDHETS------------EPKYLLG-RLM-------- 128 (590)
T ss_pred CChhhhccCcHHhh-h---hHH--------HHHhccCCCcccccccccc------------cchhHHH-HHH--------
Confidence 99997652111000 0 000 0000000011111111000 0000000 000
Q ss_pred CCCCCCccccccccCCCccchhhhcccccccchhhhcccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCC
Q 003014 394 SPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPF 473 (857)
Q Consensus 394 sp~~~~~~~~~~e~~~~~~~~~t~~~~~~~~~~~k~kd~~~~~~~s~~ssdseee~~~~tkEEa~~aFk~mL~e~~V~~~ 473 (857)
+ |..... .++ ++ -..|+|+|..+|..||++++|++.
T Consensus 129 -------------s-------------Qy~~~s--t~~-----~v-----------~r~T~E~AEk~F~~~L~e~qVdst 164 (590)
T COG5104 129 -------------S-------------QYGITS--TKD-----AV-----------YRLTKEEAEKEFITMLKENQVDST 164 (590)
T ss_pred -------------H-------------hhcchh--HHH-----HH-----------HHHHHHHHHHHHHHHHhhccCCCc
Confidence 0 000000 000 00 124899999999999999999999
Q ss_pred CchHhhhcccccCchhhcccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccHHHHHHHh
Q 003014 474 SKWEKELPKIVFDPRFKAIQS-QSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKW 552 (857)
Q Consensus 474 stWe~~~~~i~~DPRy~al~~-~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~ 552 (857)
|+|.+++..+ -||||+-|.+ +..||.+|++|+.++.+..+.+..++....+++|..||... ..|.++|.|.+|...|
T Consensus 165 w~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~kml~~n-~~I~~yT~w~t~k~~f 242 (590)
T COG5104 165 WPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKMLAGN-SHIKYYTDWFTFKSIF 242 (590)
T ss_pred ccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHhcCC-CccceeehhhhHHhhh
Confidence 9999999998 8999999864 67999999999999999888888888999999999999975 4699999999999999
Q ss_pred cCCchhhcC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCccccccc--
Q 003014 553 GSDPRFEAL-DRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVR-- 629 (857)
Q Consensus 553 ~~Dprfkal-~~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~-- 629 (857)
.++|.|.++ .+++.+++|.+|+..|-.-+++-.+.++..+...|..+|+.++ ....++|.-..-.+..++||..+.
T Consensus 243 s~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l~-~E~f~~w~l~~~~fd~~~ry~~n~~m 321 (590)
T COG5104 243 SKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSLG-SETFIIWLLNHYVFDSVVRYLKNKEM 321 (590)
T ss_pred ccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhcC-cccchhhhhhhhhhcccHHHHhhccc
Confidence 999999985 6799999999999999888888888888899999999999984 667899997777889999998743
Q ss_pred ----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 003014 630 ----HEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVE 705 (857)
Q Consensus 630 ----~~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~ree~e~er~R~~~rr~ea~~~F~aLL~E 705 (857)
..|.+--|.+|++.|+++...+..+. ++++ ..+.+.++++|++||.+
T Consensus 322 k~l~~~d~L~~f~~~v~~lE~el~~~~~e~-----------------k~~~------------~~~~r~~rd~FrtLLr~ 372 (590)
T COG5104 322 KPLDRKDILFSFIRYVRRLEKELLSAIEER-----------------KAAA------------AQNARHHRDEFRTLLRK 372 (590)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHH------------HHHHHHhHHHHHHHHHH
Confidence 34555566777777765433211100 0111 11123477899999999
Q ss_pred hh----cCCCCChHHHHHhhhcCchhhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 003014 706 TI----KDPQASWTESRPKLEKDPQGRAT--NADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGK 779 (857)
Q Consensus 706 ~v----~~p~ssW~E~~~~l~kD~r~ra~--~~~Ls~~drekLF~dhi~~L~ek~~~~Fr~LL~e~~~~~~~~~~~~~~~ 779 (857)
+. ++..++|++++++|++||||-.+ ..+.++.| ||.|+|.+|.......=+..+.++....++... .-
T Consensus 373 l~~~~ki~~R~kwk~~yp~iKddprfLnlLGr~gsspld---lf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d---~~ 446 (590)
T COG5104 373 LYSEGKIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLD---LFFDFIVDLENMYGFARRSYERETRTGQISPTD---RR 446 (590)
T ss_pred hhhhhhhhhhhhhhhhcccccCCHHHHHHhccCCCChHH---HHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcc---cc
Confidence 85 35678899999999999999764 35666776 999999999776665555555555444322211 11
Q ss_pred cccCCHHH-HHHhcCCCccccCCChhHHHHHHHHHH
Q 003014 780 TVLNSWST-AKRVLKPEPRYSKMPRKEREALWRRHA 814 (857)
Q Consensus 780 t~~~~w~e-~k~~I~~D~Ry~~l~~~eRe~lf~~~i 814 (857)
+...-+.. +.++...|.-|.+++.++...|.+..|
T Consensus 447 ~vdei~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I 482 (590)
T COG5104 447 AVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLI 482 (590)
T ss_pred chHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHH
Confidence 11111222 233455666788888776665554444
No 3
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=1.1e-33 Score=310.43 Aligned_cols=258 Identities=29% Similarity=0.494 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhcCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003014 522 KAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLR 601 (857)
Q Consensus 522 k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~ 601 (857)
..++..|+.||.+. +|...++|.....++..||||..|+..+|..+|+.||...-+.+...++..++.++++|..||.
T Consensus 242 Eer~kqFkEMLkER--gVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~ 319 (617)
T KOG0155|consen 242 EERRKQFKEMLKER--GVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLA 319 (617)
T ss_pred HHHHHHHHHHHHhc--CCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999986 6999999999999999999999999999999999999876666655556667889999999999
Q ss_pred hcCCCCCCCChHHHHHHhccCcccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 602 EKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREE 680 (857)
Q Consensus 602 e~~~It~~T~W~ev~~~L~~DpRy~~l~~-~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~ree 680 (857)
++ .++..|+|+.+...+.+|+||+++.. .||+.+|++||-.|.+.+++..+.
T Consensus 320 e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~-------------------------- 372 (617)
T KOG0155|consen 320 EA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRA-------------------------- 372 (617)
T ss_pred hC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHH--------------------------
Confidence 98 78899999999999999999999997 899999999999997754431111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHHHHHH--------
Q 003014 681 QEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE-------- 752 (857)
Q Consensus 681 ~e~er~R~~~rr~ea~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~~L~e-------- 752 (857)
++..++..|..||.+...+..+.|..++..|.+++||+++.+ .+.|+.||++||..|..
T Consensus 373 ----------~kek~ks~fv~ll~e~~l~~~S~ws~tk~~le~eery~alds---Ss~re~lf~eyia~l~~~~~sd~e~ 439 (617)
T KOG0155|consen 373 ----------KKEKLKSDFVKLLEEQELTRKSKWSKTKDTLEDEERYIALDS---SSTRESLFREYIANLGDETASDIEQ 439 (617)
T ss_pred ----------HHHHHHHHHhhhcccchhhhhhhhhHHHHHhcccHHHhhhcc---cchHHHHHHHHHHHHHhhhcccHHH
Confidence 112256789999999877889999999999999999998753 46788999999998841
Q ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHhhhhhccCCcccCCHHHHHHhcCC
Q 003014 753 --------------------------------------RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKP 794 (857)
Q Consensus 753 --------------------------------------k~~~~Fr~LL~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~ 794 (857)
.+.+.|++||.++|.. ...+|.+.+++|+.
T Consensus 440 er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all~d~irs------------~e~sw~e~rrilrk 507 (617)
T KOG0155|consen 440 EREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALLIDLIRS------------TENSWHEARRILRK 507 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------cccchHHhHHHhhc
Confidence 1345688888888643 44689999999999
Q ss_pred CccccCCC---hhHHHHHHHHHHHHHHHhhhhcccccccccC
Q 003014 795 EPRYSKMP---RKEREALWRRHAEEIQRKHKSSLDQNEDNHK 833 (857)
Q Consensus 795 D~Ry~~l~---~~eRe~lf~~~ie~l~~~~k~~~~~~~~~~~ 833 (857)
|+||.+++ ..+.+.||++||+.|.++.++.|++..++|.
T Consensus 508 d~r~as~~~le~~~keklf~dhiksl~~k~re~f~qllde~~ 549 (617)
T KOG0155|consen 508 DERYASCDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEHE 549 (617)
T ss_pred ccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999876 4678999999999999999999999877763
No 4
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.96 E-value=6.7e-29 Score=281.85 Aligned_cols=334 Identities=24% Similarity=0.390 Sum_probs=279.3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 450 TGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFK 529 (857)
Q Consensus 450 ~~~tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~ 529 (857)
.+.+|++++.+|++||++++|++.|+|+++++.|++|+||.++.++.+++++|+.|..++.+.+..+.....+.++++|.
T Consensus 21 ~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~ 100 (463)
T KOG0152|consen 21 RFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFL 100 (463)
T ss_pred HhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999777777788888899999999
Q ss_pred HHHHhhhcCCCCCccHHHHHHHhcCCchhhcCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 003014 530 QLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLS 609 (857)
Q Consensus 530 ~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~ 609 (857)
+||.++ ..+...+.|.++...|..+|+|.+....+++.+|++||.+|.+.+++++...|...+..|..+|..+..+...
T Consensus 101 ~~l~e~-~~~~~~~~~~~~~~~fa~~p~~~~~~~~~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~ 179 (463)
T KOG0152|consen 101 QMLQEE-SKYKSSTEWKTAKELFAGDPRWSEHISEDGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLD 179 (463)
T ss_pred HhHhhc-ccccccccccccccccccccchhhccchhhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhcccccccc
Confidence 999987 4688899999999999999999998877999999999999999888888777778899999999988789999
Q ss_pred CChHHHHHHhccCccccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 610 SRWSKVKDILRDDPRYKS-VRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRL 688 (857)
Q Consensus 610 T~W~ev~~~L~~DpRy~~-l~~~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~ree~e~er~R~ 688 (857)
++|..++..+..|++|.. |+..|++..|++||..+..++.+..+ ++ ++ .
T Consensus 180 ~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~~---------------~~---~~------------~ 229 (463)
T KOG0152|consen 180 RDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKEQ---------------ER---KR------------N 229 (463)
T ss_pred chHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhcc---------------hh---hh------------h
Confidence 999999999999999999 99999999999999999876543200 11 11 1
Q ss_pred HHhHHHHHHHHHHHHHHhh----cCCCCChHHHHHhhhcCchhhcc--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 689 KVRRKEAVTSFQALLVETI----KDPQASWTESRPKLEKDPQGRAT--NADLDSSDREKLFREHIKTLYERCAHDFRGLL 762 (857)
Q Consensus 689 ~~rr~ea~~~F~aLL~E~v----~~p~ssW~E~~~~l~kD~r~ra~--~~~Ls~~drekLF~dhi~~L~ek~~~~Fr~LL 762 (857)
++..+..++.|+.||.++. ++.++.|.++.+.|+.|++|-.+ ..++++.| +|.++|+.| +...+..+.+|
T Consensus 230 ~~~~Rk~rD~~~~lL~~~~~~~ki~s~T~w~~~~~~i~~~~r~~~~ln~sgstp~d---lf~d~ve~l-~~~~~~~~~~i 305 (463)
T KOG0152|consen 230 KRQERKNRDAFRSLLQELPATGKITSTTGWEDLFPSIKDDPRSANALNQSGSTPLD---LFEDPVEPL-EPRYYEYPPLI 305 (463)
T ss_pred hhhhhhhhhhhhhHHHhhccccccccccCCccccchhcCCcchHhhcCCCCCChhh---ccccccccc-ccccccchHHH
Confidence 1122235677999999987 46799999999999999887542 35666666 999999999 44567778888
Q ss_pred HHHHHHHHhhhhhccCCcccCCHHHHHHhcCCCccccCCChhHHHHHHHHHHHHHHHhhhhc
Q 003014 763 AEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSS 824 (857)
Q Consensus 763 ~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~~eRe~lf~~~ie~l~~~~k~~ 824 (857)
.+++....+.+ ...++...+..+|.+|..|..++.......|...+++...+..+.
T Consensus 306 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~L~~~~~~~~~~~ 361 (463)
T KOG0152|consen 306 KDCLKERQIEL------SAQTSLQEFNSVLSKDKENEKVDAASMKLVFQSLIEKAKSKIPER 361 (463)
T ss_pred HHHHHhhcccc------cchhhHHHhhhhhhhhhccccccHHHHHHHHHHHHHHHhccccHH
Confidence 88876643322 223345779999999999999998888888877776666544433
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=232.05 Aligned_cols=256 Identities=18% Similarity=0.231 Sum_probs=198.7
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhcCC--HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003014 522 KAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD--RKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSM 599 (857)
Q Consensus 522 k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~--~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~L 599 (857)
++|..+|..||.++ ++++.++|..+.+.+ .||+|.-++ .--|+.+|..|+..-.+...++..+...+.+.+|.+|
T Consensus 146 E~AEk~F~~~L~e~--qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~km 222 (590)
T COG5104 146 EEAEKEFITMLKEN--QVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKM 222 (590)
T ss_pred HHHHHHHHHHHhhc--cCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHH
Confidence 45556899999986 589999999888887 788888775 3789999999998765554444445556789999999
Q ss_pred hhhcCCCCCCCChHHHHHHhccCcccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 600 LREKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKER 678 (857)
Q Consensus 600 L~e~~~It~~T~W~ev~~~L~~DpRy~~l~~-~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~r 678 (857)
|.....|...|.|..++.+|.++|-|.++.. .+...+|.+|++.|-.-+...
T Consensus 223 l~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~--------------------------- 275 (590)
T COG5104 223 LAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYV--------------------------- 275 (590)
T ss_pred hcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHH---------------------------
Confidence 9998899999999999999999999998765 688999999999996543211
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcc--cCCCCHHHHHHHHHHHHHHHH-----
Q 003014 679 EEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRAT--NADLDSSDREKLFREHIKTLY----- 751 (857)
Q Consensus 679 ee~e~er~R~~~rr~ea~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~--~~~Ls~~drekLF~dhi~~L~----- 751 (857)
.++++.+|...|..+|..+...+-+.|.-..-.+-+++||... ..-|+..|..--|.+||..|.
T Consensus 276 ---------~k~~~~~al~~l~e~lr~l~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~~ 346 (590)
T COG5104 276 ---------GKHMGGTALGRLEEVLRSLGSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELLS 346 (590)
T ss_pred ---------HHhhcccchHHHHHHHHhcCcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445777888889888777888999777888888888652 244667776667888888885
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHhhhhhccCCcccCCHHHHHHhcCCCccccCCCh---hHHHHHHHHHHH
Q 003014 752 -------------ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR---KEREALWRRHAE 815 (857)
Q Consensus 752 -------------ek~~~~Fr~LL~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~---~eRe~lf~~~ie 815 (857)
+..++.||.||.++.... .++.-+.|+++..+|++||||..|-. +.-..||-++|-
T Consensus 347 ~~~e~k~~~~~~~r~~rd~FrtLLr~l~~~~--------ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~iv 418 (590)
T COG5104 347 AIEERKAAAAQNARHHRDEFRTLLRKLYSEG--------KIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFIV 418 (590)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh--------hhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHHH
Confidence 235778999999986432 35666789999999999999998743 445667778787
Q ss_pred HHHHhhhhc
Q 003014 816 EIQRKHKSS 824 (857)
Q Consensus 816 ~l~~~~k~~ 824 (857)
++.+....+
T Consensus 419 Dlenmy~~~ 427 (590)
T COG5104 419 DLENMYGFA 427 (590)
T ss_pred hHHHHHHHH
Confidence 777755433
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.72 E-value=4.5e-17 Score=185.76 Aligned_cols=315 Identities=21% Similarity=0.338 Sum_probs=245.7
Q ss_pred CHHHHHHHHHHHHHhc-CCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 453 TKEECIIKFKEMLKER-GVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQL 531 (857)
Q Consensus 453 tkEEa~~aFk~mL~e~-~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~L 531 (857)
...+++..|..||.++ .+.+...|.++...|..||+|.+.... .++.+|+.|+.++.+.+++++...++..+.+|..+
T Consensus 91 ~~kk~k~d~~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~ 169 (463)
T KOG0152|consen 91 DVKKAKEDFLQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKHL 169 (463)
T ss_pred hhhhhHHHHHHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcc
Confidence 4456889999999998 699999999999999999999998775 89999999999999888877766667788899999
Q ss_pred HHhhhcCCCCCccHHHHHHHhcCCchhhc-CCHHHHHHHHHHHHHHhhhHHHHHHHH------HHHHHHHHHHHHhhhcC
Q 003014 532 LEEVSEDIDHSTDYQTFKKKWGSDPRFEA-LDRKDRELLLNERVLPLKRAAEEKAQA------IRAAAASSFKSMLREKG 604 (857)
Q Consensus 532 L~e~~~~i~~~t~W~e~~~k~~~Dprfka-l~~~eRe~LF~Eyi~~Lkk~e~Ek~r~------~R~~~~~~F~~LL~e~~ 604 (857)
|... ..+...+.|..+...+..+++|.. |+..|+...|++||..+.+++.++.+. .-+++++.|+.||.+..
T Consensus 170 ~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~~ 248 (463)
T KOG0152|consen 170 LNSE-SSIGLDRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQELP 248 (463)
T ss_pred hhcc-ccccccchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhhc
Confidence 9865 358889999999999999999998 999999999999999887766533221 12467888999999974
Q ss_pred ---CCCCCCChHHHHHHhccCccccccc---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 605 ---DITLSSRWSKVKDILRDDPRYKSVR---HEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKER 678 (857)
Q Consensus 605 ---~It~~T~W~ev~~~L~~DpRy~~l~---~~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~r 678 (857)
.|+..|.|.++...|.+|++|..+. ++..+++|.+++..|+....+....
T Consensus 249 ~~~ki~s~T~w~~~~~~i~~~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~------------------------ 304 (463)
T KOG0152|consen 249 ATGKITSTTGWEDLFPSIKDDPRSANALNQSGSTPLDLFEDPVEPLEPRYYEYPPL------------------------ 304 (463)
T ss_pred cccccccccCCccccchhcCCcchHhhcCCCCCChhhcccccccccccccccchHH------------------------
Confidence 7999999999999999999999876 4688999999999997643221110
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHHHHHH------
Q 003014 679 EEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE------ 752 (857)
Q Consensus 679 ee~e~er~R~~~rr~ea~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~~L~e------ 752 (857)
+++.++.+..+. ...+...++...+.+|..+. .++......+|+..+.....
T Consensus 305 ----------------i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~k~~~~~L~~~~~~~~~~~~ 362 (463)
T KOG0152|consen 305 ----------------IKDCLKERQIEL--SAQTSLQEFNSVLSKDKENE----KVDAASMKLVFQSLIEKAKSKIPERK 362 (463)
T ss_pred ----------------HHHHHHhhcccc--cchhhHHHhhhhhhhhhccc----cccHHHHHHHHHHHHHHHhccccHHH
Confidence 122233332222 33445577778888887653 34566666677777666642
Q ss_pred --------HHHHHHHHHHHHHHHHHHhhhhhccCCcccCCHHHHHHhcCCCccccCCChh-HHHHHHHHHHHHHHHhhhh
Q 003014 753 --------RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRK-EREALWRRHAEEIQRKHKS 823 (857)
Q Consensus 753 --------k~~~~Fr~LL~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~~-eRe~lf~~~ie~l~~~~k~ 823 (857)
+...+|+.||..+. +++..++|..+++.+...++|..|.++ .|..+|..|+..+......
T Consensus 363 ~~~~~~l~~~~~~f~~~l~~~~-----------~~~~~~~~~~a~p~~~~s~~~~~~~~e~~~~~~~~~~~t~~~~~~~~ 431 (463)
T KOG0152|consen 363 RIENRRLRRHANNFRNLLKSLN-----------GIPKSSTWDSAKPLVEDSEEFSALGSEESRVPGFPDYVTPLVSTQPG 431 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----------CCcccCCchhhccccccChhhhhcCCccccceeccccccchhhcccc
Confidence 33456777777662 577889999999999999999999765 5999999999888886654
Q ss_pred ccc
Q 003014 824 SLD 826 (857)
Q Consensus 824 ~~~ 826 (857)
...
T Consensus 432 ~~~ 434 (463)
T KOG0152|consen 432 SES 434 (463)
T ss_pred ccc
Confidence 443
No 7
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.32 E-value=2.1e-11 Score=143.39 Aligned_cols=251 Identities=19% Similarity=0.311 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhc---C-CHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHH
Q 003014 521 QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEA---L-DRKDRELLLNERVLPLKRAAEEKAQAIR-AAAASS 595 (857)
Q Consensus 521 ~k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfka---l-~~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R-~~~~~~ 595 (857)
--.|++.|..||... +...++|-.+..++..+|.|.. | +.+-...+|..||.+||.++..++++.. ..+-.+
T Consensus 51 ~~~~k~~f~~lvs~~---v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~ 127 (1100)
T KOG4271|consen 51 NLTAKDKFETLVSQA---VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEA 127 (1100)
T ss_pred hhhHHHHHHHHHHHH---hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999876 4556779999999999999986 3 3466678999999999999988776654 456688
Q ss_pred HHHHhhhcCCCCCCCChHHHHHHhccCcccccccc----------------------------ccHHHHHHHHHHHHHHH
Q 003014 596 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRH----------------------------EDREVIFNEYVRELKAA 647 (857)
Q Consensus 596 F~~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~~----------------------------~dr~~lFeeyi~~L~~~ 647 (857)
|..||.....|. --|.+++++++..|.|..+-. -+.+.+|+.|+..|.
T Consensus 128 f~~~l~~ld~~e--~~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~-- 203 (1100)
T KOG4271|consen 128 FQVLLPNLDEIE--HLWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLR-- 203 (1100)
T ss_pred HHHhcccHHHHH--HHHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhh--
Confidence 999987764443 357799999999988765311 122334444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-hcCCCCChHHHHHhhhcCch
Q 003014 648 EEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVET-IKDPQASWTESRPKLEKDPQ 726 (857)
Q Consensus 648 e~e~~r~~k~kre~~~~l~eRere~rk~k~ree~e~er~R~~~rr~ea~~~F~aLL~E~-v~~p~ssW~E~~~~l~kD~r 726 (857)
..+++.+.+..|+.+|.+. ++.++..|+++...|+++..
T Consensus 204 ----------------------------------------n~r~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~ 243 (1100)
T KOG4271|consen 204 ----------------------------------------NERKRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDF 243 (1100)
T ss_pred ----------------------------------------hhhhhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhH
Confidence 2223344566799999997 57999999999999999987
Q ss_pred hhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccCCHHHHHHhcCCCccccCCCh--h
Q 003014 727 GRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR--K 804 (857)
Q Consensus 727 ~ra~~~~Ls~~drekLF~dhi~~L~ek~~~~Fr~LL~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~--~ 804 (857)
|+.+ ++.....+|..|+..|.++++..|+++|.++... |.....++...+...++|+.+|..+.||..+-. -
T Consensus 244 ~qkl----te~v~t~vy~r~qk~i~ekak~~~qE~l~e~s~L--f~d~~~~a~~fsdKmeti~d~le~e~rye~~~~~Ap 317 (1100)
T KOG4271|consen 244 YQKL----TESVYTDVYGRHQKQIIEKAKEEFQELLLEYSEL--FYDLELDAKPFSDKMETIQDVLEEEARYEAALKQAP 317 (1100)
T ss_pred HHhc----ccceeeccchHHHHHHHHHHHHHHHHHHHHHhhh--hhhhhhccccccchhHHHHHHHHhHHHHHHHHHhCc
Confidence 7653 4555566899999999999999999999998654 333234456677789999999999999999875 4
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 003014 805 EREALWRRHAEEIQRKHKSS 824 (857)
Q Consensus 805 eRe~lf~~~ie~l~~~~k~~ 824 (857)
+|++|.-.|+-.+..-.++.
T Consensus 318 erdalil~higfv~~~t~~t 337 (1100)
T KOG4271|consen 318 ERDALILKHIGFVYHPTKET 337 (1100)
T ss_pred chhhhhhhcCceeeCCCCCC
Confidence 79999988887777666643
No 8
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.11 E-value=1e-10 Score=94.71 Aligned_cols=50 Identities=50% Similarity=0.891 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcc-cCHHHHHHHHHHH
Q 003014 456 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAI-QSQSARRALFERY 505 (857)
Q Consensus 456 Ea~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al-~~~~ERK~lFeeY 505 (857)
+|+++|++||++++|+++++|+.+++.|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999 8999999999998
No 9
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.03 E-value=2e-10 Score=94.32 Aligned_cols=52 Identities=42% Similarity=0.665 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCC-CCCchHhhhcccccCchhhcccCHHHHHHHHHHHHH
Q 003014 456 ECIIKFKEMLKERGVA-PFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507 (857)
Q Consensus 456 Ea~~aFk~mL~e~~V~-~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~ 507 (857)
+++++|++||++.++. ++++|+.++++|.+||||.+|.+..+|+++|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 5889999999999866 999999999999999999999999999999999996
No 10
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.72 E-value=5.7e-08 Score=113.10 Aligned_cols=29 Identities=7% Similarity=0.260 Sum_probs=15.3
Q ss_pred ccccCchhhc-ccCH--HHHHHHHHHHHHHHH
Q 003014 482 KIVFDPRFKA-IQSQ--SARRALFERYVKTRA 510 (857)
Q Consensus 482 ~i~~DPRy~a-l~~~--~ERK~lFeeY~~~r~ 510 (857)
.+.+|=+|.+ |.+. .+-|...-.|+.+.-
T Consensus 840 afgF~is~L~kL~dTKsaDqk~TLLHfLae~~ 871 (1102)
T KOG1924|consen 840 AFGFNISFLCKLRDTKSADQKTTLLHFLAEIC 871 (1102)
T ss_pred hhccchHHHHhhccccccchhhHHHHHHHHHH
Confidence 3566666665 3322 355566666665544
No 11
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.70 E-value=9.4e-09 Score=74.74 Aligned_cols=30 Identities=40% Similarity=0.707 Sum_probs=27.7
Q ss_pred CCCCcEEEEcCC-CCeeeecCCCCceeccCC
Q 003014 234 QLDAWTAHKTDT-GIVYYYNAVTGESTYEKP 263 (857)
Q Consensus 234 ~~~~W~e~~~~~-Gr~YYyN~~T~~StWekP 263 (857)
++.+|+++.+++ |++||||+.|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 467899999875 999999999999999998
No 12
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.65 E-value=5.1e-08 Score=78.88 Aligned_cols=50 Identities=44% Similarity=0.662 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHH
Q 003014 695 AVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 746 (857)
Q Consensus 695 a~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dh 746 (857)
|+++|++||.++.+++.++|.+++++|.+||+|.++ +.+..+|+.||++|
T Consensus 2 a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i--~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 2 AREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAI--GDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHS--TSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHh--cCCHHHHHHHHHhC
Confidence 667899999999999999999999999999999886 46899999999997
No 13
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.62 E-value=4.1e-08 Score=80.55 Aligned_cols=52 Identities=35% Similarity=0.707 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCChHHHHHHhccCcccccccc-ccHHHHHHHHHH
Q 003014 591 AAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVR 642 (857)
Q Consensus 591 ~~~~~F~~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~~-~dr~~lFeeyi~ 642 (857)
+++++|+.||.+...++++++|++++.+|.+||||.+|.. .+|+.+|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 3678999999999778899999999999999999988765 799999999996
No 14
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=1.8e-07 Score=108.96 Aligned_cols=16 Identities=13% Similarity=0.025 Sum_probs=8.9
Q ss_pred ccCCCCCCCCCCCCCc
Q 003014 184 VRTAAATSHSAIPGHQ 199 (857)
Q Consensus 184 ~~~~~~~~~~~~~g~q 199 (857)
+|..||..+|+.+|+.
T Consensus 589 ~g~~Gg~ppPP~~gm~ 604 (1102)
T KOG1924|consen 589 GGFLGGPPPPPPPGMF 604 (1102)
T ss_pred CCCCCCCCCCCCCCcc
Confidence 4445555555556654
No 15
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.50 E-value=1.2e-07 Score=68.89 Aligned_cols=28 Identities=36% Similarity=0.820 Sum_probs=25.7
Q ss_pred CCcEEEEcCC-CceEEEeCCCCeeeccCC
Q 003014 288 TDWALVTTND-GKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 288 ~~W~e~~t~~-Gr~YyyN~~T~~S~We~P 315 (857)
.+|+++.+++ |++||||..|++|+|+.|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 4699999876 999999999999999998
No 16
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.47 E-value=1.6e-07 Score=68.48 Aligned_cols=31 Identities=39% Similarity=0.693 Sum_probs=29.1
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
++.+|+++.+.+|+.||||+.|++|+|++|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 4679999999999999999999999999996
No 17
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=98.45 E-value=1.7e-06 Score=103.12 Aligned_cols=180 Identities=19% Similarity=0.338 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhcCCCCCCchHhhhcccccCchhhc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 003014 457 CIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKA---IQSQSARRALFERYVKTRAEEERKEKRAAQKA-AIEGFKQLL 532 (857)
Q Consensus 457 a~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~a---l~~~~ERK~lFeeY~~~r~keEreekr~~~k~-a~e~F~~LL 532 (857)
|+..|-.||... |...+.|-++..+|-..|.|.- |.....-+.+|+.|+.+++++....+|...-. .-++|..||
T Consensus 54 ~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l 132 (1100)
T KOG4271|consen 54 AKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLL 132 (1100)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677787777653 4444569999999999999987 44556677899999999888877655554433 357899998
Q ss_pred HhhhcCCCCCccHHHHHHHhcCCchhhcC----------------------------CHHHHHHHHHHHHHHhhhHHHHH
Q 003014 533 EEVSEDIDHSTDYQTFKKKWGSDPRFEAL----------------------------DRKDRELLLNERVLPLKRAAEEK 584 (857)
Q Consensus 533 ~e~~~~i~~~t~W~e~~~k~~~Dprfkal----------------------------~~~eRe~LF~Eyi~~Lkk~e~Ek 584 (857)
... ..|.+ -|..+++.++..|.|..| +.-+.+++|+.|+..|..+.
T Consensus 133 ~~l-d~~e~--~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r--- 206 (1100)
T KOG4271|consen 133 PNL-DEIEH--LWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNER--- 206 (1100)
T ss_pred ccH-HHHHH--HHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhh---
Confidence 764 23443 466888888888877531 11356889999987775431
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCccccccccccHHHHHHHHHHHHHH
Q 003014 585 AQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKA 646 (857)
Q Consensus 585 ~r~~R~~~~~~F~~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~~~dr~~lFeeyi~~L~~ 646 (857)
.+-+.+.+|+.+|++...|+++-.|.++...|.++.-|+.+....--++|..|..+|-.
T Consensus 207 ---~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i~e 265 (1100)
T KOG4271|consen 207 ---KRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQIIE 265 (1100)
T ss_pred ---hhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHHHH
Confidence 33456789999999999999999999999999999999999887777888778777743
No 18
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.39 E-value=3.3e-07 Score=66.15 Aligned_cols=30 Identities=37% Similarity=0.684 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 235 LDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 235 ~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
+.+|+++.+.+|++||||+.|++|+|++|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 468999999999999999999999999995
No 19
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.24 E-value=1.1e-06 Score=64.12 Aligned_cols=29 Identities=34% Similarity=0.850 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 288 ~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
.+|.++.+.+|++||||..|++|+|+.|.
T Consensus 3 ~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 3 PGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 68999999999999999999999999995
No 20
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.11 E-value=3.1e-06 Score=61.06 Aligned_cols=29 Identities=34% Similarity=0.772 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 288 ~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
.+|..+++.+|++||||..|++|+|+.|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 47999999999999999999999999995
No 21
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=97.66 E-value=5.5e-05 Score=77.62 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=61.0
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCe
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKV 309 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~ 309 (857)
....++++|..--+-.||+||.++.+..|.|..|.+-. .|+ .+|+.|.+..--+||||..+|.
T Consensus 90 edlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerE----------------gLp-pGW~rv~s~e~GtyY~~~~~k~ 152 (271)
T KOG1891|consen 90 EDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLERE----------------GLP-PGWKRVFSPEKGTYYYHEEMKR 152 (271)
T ss_pred ccCCCCCCcceeeEecCceeEeecCCCcccccChhhhc----------------cCC-cchhhccccccceeeeecccch
Confidence 44569999999999999999999999999999997532 233 5899999987669999999999
Q ss_pred eeccCChh
Q 003014 310 SSWQIPSE 317 (857)
Q Consensus 310 S~We~P~e 317 (857)
++++-|..
T Consensus 153 tQy~HPc~ 160 (271)
T KOG1891|consen 153 TQYEHPCI 160 (271)
T ss_pred hhhcCCCC
Confidence 99999864
No 22
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.1e-05 Score=75.89 Aligned_cols=37 Identities=30% Similarity=0.638 Sum_probs=32.8
Q ss_pred CCCCCCCCcEEEEc-CCCCeeeecCCCCceeccCCCCC
Q 003014 230 SVNEQLDAWTAHKT-DTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 230 ~~~~~~~~W~e~~~-~~Gr~YYyN~~T~~StWekP~~l 266 (857)
+.+.++.+|+...+ .+||.||||+.|++|+||+|.+.
T Consensus 3 ~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t 40 (163)
T KOG3259|consen 3 DEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGT 40 (163)
T ss_pred ccccCCchhheeccccCCCcceeccccchhhccCCCcc
Confidence 34568999999998 58999999999999999999864
No 23
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.63 E-value=0.00083 Score=73.01 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003014 87 GDFYSSAGLRPSVPTPS 103 (857)
Q Consensus 87 ~~~~~~~~~~~~~p~~~ 103 (857)
+.-|+.+.++|.|+.-+
T Consensus 234 ~s~P~N~~~~P~~~~Q~ 250 (498)
T KOG4849|consen 234 TSLPSNLNQAPQMRLQI 250 (498)
T ss_pred CCCCCCcCcCcccCcCc
Confidence 44566666777666543
No 24
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00017 Score=69.76 Aligned_cols=33 Identities=30% Similarity=0.772 Sum_probs=28.7
Q ss_pred CCCCCCcEEEEc-CCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTT-NDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t-~~Gr~YyyN~~T~~S~We~P~e 317 (857)
.|| .+|+...+ ..||+||||+.|++|+|+.|.+
T Consensus 6 ~LP-~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 6 KLP-PGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred cCC-chhheeccccCCCcceeccccchhhccCCCc
Confidence 345 78998766 6899999999999999999986
No 25
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.15 E-value=0.0057 Score=69.69 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 146 LPFLPYPAAYPSPFPLPAHGMPNPSV 171 (857)
Q Consensus 146 pp~~~~~~~~~g~~~~p~~g~~~p~~ 171 (857)
||...+|+++ +.|||..|..+|++
T Consensus 423 Pp~apPppPP--PPPmPs~gagppPP 446 (569)
T KOG3671|consen 423 PPSAPPPPPP--PPPMPSTGAGPPPP 446 (569)
T ss_pred CCCCCCCCCc--CCCCCccCCCCCCC
Confidence 4444444332 33356555544444
No 26
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.021 Score=70.69 Aligned_cols=10 Identities=30% Similarity=0.096 Sum_probs=7.2
Q ss_pred ccCCCCcccc
Q 003014 17 STNSQPVQAS 26 (857)
Q Consensus 17 ~~~~~~~~~~ 26 (857)
+.++||.|.+
T Consensus 724 ~~~~qP~~~~ 733 (1049)
T KOG0307|consen 724 IGVTQPQCYS 733 (1049)
T ss_pred CCcCCCcccc
Confidence 6678888763
No 27
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=96.89 E-value=0.0058 Score=63.60 Aligned_cols=28 Identities=14% Similarity=0.020 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 99 VPTPSAPSNSGSAIQHQIYPTYPSLPPI 126 (857)
Q Consensus 99 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (857)
||.+.+.+-|++.++++.|+++.-.+||
T Consensus 115 ~p~~~~~~f~~~p~~p~g~~pp~~~~gm 142 (341)
T KOG2893|consen 115 MPFPQHFPFPGMPPMPSGPPPPSMAYGM 142 (341)
T ss_pred CCCcccCCCCCCCCCCCCCCCcccccCC
Confidence 5555665666666777777765555665
No 28
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.80 E-value=0.032 Score=63.90 Aligned_cols=9 Identities=22% Similarity=-0.060 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 003014 89 FYSSAGLRP 97 (857)
Q Consensus 89 ~~~~~~~~~ 97 (857)
++..+-+|-
T Consensus 351 ~~~pa~gRs 359 (569)
T KOG3671|consen 351 IPLPAQGRS 359 (569)
T ss_pred CCCCccccC
Confidence 333333443
No 29
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=96.74 E-value=0.081 Score=60.67 Aligned_cols=23 Identities=39% Similarity=0.381 Sum_probs=10.5
Q ss_pred ccccccc-CCCCcccceeccccccc
Q 003014 12 LGSSTST-NSQPVQASVRTFSDSTV 35 (857)
Q Consensus 12 ~~~~~~~-~~~~~~~~~~~~~~~~~ 35 (857)
||+.++- ||-|+ .||+..-...+
T Consensus 326 ~~~a~~~~~~~P~-~s~~as~~~~a 349 (554)
T KOG0119|consen 326 LGHATSLGNSRPP-DSNPASLSGTA 349 (554)
T ss_pred ccchhcCCCCCCC-cccccCCCCCC
Confidence 4444433 56554 45554433333
No 30
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.057 Score=65.49 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=8.3
Q ss_pred cCCCceEEEeC
Q 003014 295 TNDGKKYYYNS 305 (857)
Q Consensus 295 t~~Gr~YyyN~ 305 (857)
+.+||+|+.|-
T Consensus 355 ~~~gr~f~Cn~ 365 (1007)
T KOG1984|consen 355 IDGGRKFICNF 365 (1007)
T ss_pred ecCCceEEecC
Confidence 56788888775
No 31
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.1 Score=64.95 Aligned_cols=15 Identities=27% Similarity=0.082 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCCC
Q 003014 166 MPNPSVSQIDAQPPG 180 (857)
Q Consensus 166 ~~~p~~~~p~~~ppg 180 (857)
+++++++.|..++|+
T Consensus 832 ~~~~~~S~p~~~~pv 846 (1049)
T KOG0307|consen 832 PPAAPPSFPYAPNPV 846 (1049)
T ss_pred CCCCCccCCCCCCCC
Confidence 333444444444433
No 32
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=0.14 Score=62.27 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=9.4
Q ss_pred CCceEEEeCCCCeee
Q 003014 297 DGKKYYYNSKMKVSS 311 (857)
Q Consensus 297 ~Gr~YyyN~~T~~S~ 311 (857)
+=...|||+.+....
T Consensus 371 ~vp~~yf~~L~~~gr 385 (1007)
T KOG1984|consen 371 QVPDDYFNHLGPTGR 385 (1007)
T ss_pred cCChhhcccCCCccc
Confidence 345677888776543
No 33
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=96.22 E-value=0.19 Score=57.76 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=4.2
Q ss_pred CCCCCCCCCC
Q 003014 50 MPTIPSFSTP 59 (857)
Q Consensus 50 ~~~~~~~~~~ 59 (857)
++-+|.+|.|
T Consensus 384 ~~~ap~~P~P 393 (554)
T KOG0119|consen 384 RPHAPNGPPP 393 (554)
T ss_pred cccCCCCCCC
Confidence 3344444333
No 34
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=95.99 E-value=0.11 Score=54.52 Aligned_cols=9 Identities=22% Similarity=0.006 Sum_probs=5.3
Q ss_pred CCHHHHHHH
Q 003014 452 PTKEECIIK 460 (857)
Q Consensus 452 ~tkEEa~~a 460 (857)
.+.||++.+
T Consensus 322 isleerraq 330 (341)
T KOG2893|consen 322 ISLEERRAQ 330 (341)
T ss_pred ccHHHHhhh
Confidence 466666544
No 35
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.73 E-value=0.3 Score=58.79 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=5.4
Q ss_pred CCCCCCCCCCC
Q 003014 120 YPSLPPIGVSP 130 (857)
Q Consensus 120 ~~~~~~~~~~~ 130 (857)
+|.+|+|+-+|
T Consensus 645 Pp~~Ppm~~pp 655 (894)
T KOG0132|consen 645 PPGQPPMGIPP 655 (894)
T ss_pred CCCCCCCCCCC
Confidence 44555555443
No 36
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=94.43 E-value=1.4 Score=49.89 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=9.7
Q ss_pred CHHHHHHHHHHHHH
Q 003014 453 TKEECIIKFKEMLK 466 (857)
Q Consensus 453 tkEEa~~aFk~mL~ 466 (857)
|++++-.+|++=|+
T Consensus 471 tkDDaY~~FMkEM~ 484 (487)
T KOG4672|consen 471 TKDDAYNAFMKEMD 484 (487)
T ss_pred cchHHHHHHHHHHh
Confidence 67778888875443
No 37
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.75 E-value=0.092 Score=59.39 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=60.5
Q ss_pred CCCCCcEEEEcCCC---CeeeecCCCC-ceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCC
Q 003014 233 EQLDAWTAHKTDTG---IVYYYNAVTG-ESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMK 308 (857)
Q Consensus 233 ~~~~~W~e~~~~~G---r~YYyN~~T~-~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~ 308 (857)
.++.+|....+.+| ..||+|+.+. .|+|..|....... .+ ....+....++-.+|....++.|.+||||+.-+
T Consensus 60 glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~-~l--~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~~ 136 (358)
T KOG0940|consen 60 GLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPG-HL--TYFRFVGGVLALAGWHMRFTDTGQRPFYKHILK 136 (358)
T ss_pred CCCcceeeeeccccCCcceeeeeecccccccccCCccCCCCC-cc--cccccccccccccceeeEecCCCceehhhhhhc
Confidence 36678999999998 9999999999 59999998652211 10 001111112222379999999999999999999
Q ss_pred eeeccCChhh
Q 003014 309 VSSWQIPSEV 318 (857)
Q Consensus 309 ~S~We~P~e~ 318 (857)
.++|-.|.+.
T Consensus 137 ktt~ldd~e~ 146 (358)
T KOG0940|consen 137 KTTTLDDREA 146 (358)
T ss_pred CccccCchhh
Confidence 9999888775
No 38
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.01 E-value=2 Score=47.65 Aligned_cols=10 Identities=40% Similarity=0.484 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 003014 129 SPQGPLLRPP 138 (857)
Q Consensus 129 ~~~~~~~~pp 138 (857)
|++.|.+-||
T Consensus 264 P~~t~~G~pP 273 (498)
T KOG4849|consen 264 PQQTMLGNPP 273 (498)
T ss_pred CccccCCCCC
Confidence 3444444444
No 39
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.51 E-value=2 Score=54.43 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 153 AAYPSPFPLPAHGMPNPSVSQIDAQPPGL 181 (857)
Q Consensus 153 ~~~~g~~~~p~~g~~~p~~~~p~~~ppg~ 181 (857)
++.||+.+++..|.+.|..+...-.++|.
T Consensus 1898 ~~~pqp~gpqPp~~p~p~l~~v~~~rrg~ 1926 (1958)
T KOG0391|consen 1898 AAQPQPQGPQPPQQPSPQLTTVTAPRRGA 1926 (1958)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCCC
Confidence 34444444444444444444333445555
No 40
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=2.4 Score=51.97 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 003014 806 REALWRRHAEEI 817 (857)
Q Consensus 806 Re~lf~~~ie~l 817 (857)
|...|..+|||.
T Consensus 856 k~~f~~~lvEDr 867 (887)
T KOG1985|consen 856 KAWFFSRLVEDR 867 (887)
T ss_pred HHHHHHHHHhhh
Confidence 455555555554
No 41
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=90.82 E-value=0.84 Score=55.24 Aligned_cols=37 Identities=11% Similarity=0.204 Sum_probs=17.6
Q ss_pred CCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHHHHH
Q 003014 709 DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLY 751 (857)
Q Consensus 709 ~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~~L~ 751 (857)
+....++++..++-+.|.- .++.--..+|.-++..++
T Consensus 691 ~A~~af~~~~~y~Gespk~------tppt~ff~~f~~F~~~~k 727 (830)
T KOG1923|consen 691 DAAEAFEDVVEYFGESPKT------TPPTVFFQLFVRFVRAYK 727 (830)
T ss_pred HHHHHHHhHhHhhCCCCCC------CCCCccHHHHHHHHHHHH
Confidence 3444555666666555421 122222335665665553
No 42
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=89.91 E-value=19 Score=41.21 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 003014 118 PTYPSLPPI 126 (857)
Q Consensus 118 ~~~~~~~~~ 126 (857)
|++|....|
T Consensus 335 ppPpp~~~~ 343 (518)
T KOG1830|consen 335 PPPPPPLLM 343 (518)
T ss_pred CCCCCcccc
Confidence 333333333
No 43
>PHA03378 EBNA-3B; Provisional
Probab=88.32 E-value=9.1 Score=46.06 Aligned_cols=7 Identities=57% Similarity=0.928 Sum_probs=3.5
Q ss_pred CCCCCCc
Q 003014 193 SAIPGHQ 199 (857)
Q Consensus 193 ~~~~g~q 199 (857)
.+.+|+|
T Consensus 812 ~~~~gq~ 818 (991)
T PHA03378 812 RAAPGQQ 818 (991)
T ss_pred CCCcccc
Confidence 3445554
No 44
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=87.75 E-value=0.29 Score=53.35 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=32.4
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~ 267 (857)
.+.....|++-+.++|.+||||..|++|.|..|..+.
T Consensus 146 ~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ 182 (336)
T KOG0150|consen 146 ANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISF 182 (336)
T ss_pred hhhhhhhcccccCCCCCCcceecCCCccccCCCCccc
Confidence 3446668999999999999999999999999998654
No 45
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=87.37 E-value=39 Score=42.70 Aligned_cols=29 Identities=17% Similarity=0.301 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccC
Q 003014 456 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQS 494 (857)
Q Consensus 456 Ea~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~ 494 (857)
-.-+.|.+-|.. |-|+-++ .|-.|+-|.+
T Consensus 549 SQSArF~kHldR-G~NSCaR---------TDL~F~Pl~g 577 (982)
T PF03154_consen 549 SQSARFNKHLDR-GYNSCAR---------TDLYFVPLPG 577 (982)
T ss_pred hHHHHHHHHhhc-ccccccc---------cceeeeecCc
Confidence 345678888765 4454333 5666666665
No 46
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.18 E-value=6.5 Score=48.42 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=8.8
Q ss_pred EEcCCCceEEEeCCCCe
Q 003014 293 VTTNDGKKYYYNSKMKV 309 (857)
Q Consensus 293 ~~t~~Gr~YyyN~~T~~ 309 (857)
+.+=|...+||+...+-
T Consensus 337 fi~fDs~ihfy~~~~~~ 353 (887)
T KOG1985|consen 337 FITFDSTIHFYSVQGDL 353 (887)
T ss_pred EEEeeceeeEEecCCCc
Confidence 44445555555555444
No 47
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=87.14 E-value=0.5 Score=51.51 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=41.1
Q ss_pred CceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhh
Q 003014 256 GESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318 (857)
Q Consensus 256 ~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~ 318 (857)
..++|..|.++.+..+.. .-...|.+-..++|..||||..|++|+|..|...
T Consensus 130 ~a~q~~~~~g~v~~~e~~-----------~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~ 181 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEAN-----------AETKEWVEGKNESGPTYYSNKRTNESVWKPPRIS 181 (336)
T ss_pred ccchhhccccccchhhhh-----------hhhhhcccccCCCCCCcceecCCCccccCCCCcc
Confidence 678888888887544321 1125699999999999999999999999999864
No 48
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=84.98 E-value=1.5 Score=52.58 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=61.9
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCC------------C--------CC--------CCCC-Cc--
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPD------------K--------VP--------VQPT-PI-- 280 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~------------~--------~~--------~qp~-P~-- 280 (857)
--++..|.+.....+..|.-...++.++||.+++..-..+ . .+ .|++ +.
T Consensus 131 ~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~~~~~~~~E~~e~s~~~s~~m~ssy~aPsts~s~~~~~~ 210 (984)
T KOG3209|consen 131 LLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENGSGQNYSVEMEESSYPTSSDMPSSYFAPSTSQSTTPMDR 210 (984)
T ss_pred ccCCCcchhcccccCcceeehhccCCCCcccccccCccccccCCcccchhhhhccCCccCCCcccccccccCCCCCcccc
Confidence 3467789999999999999999999999999887631100 0 00 0111 11
Q ss_pred ----c----ccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhhH
Q 003014 281 ----S----MEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVT 319 (857)
Q Consensus 281 ----~----~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~~ 319 (857)
. ..+++ ..|..-.|..|-+||.++.|++++|-+|. |.
T Consensus 211 ~~~~~~e~~~gplp-~nwemayte~gevyfiDhntkttswLdpr-l~ 255 (984)
T KOG3209|consen 211 YSPATQEDNLGPLP-HNWEMAYTEQGEVYFIDHNTKTTSWLDPR-LT 255 (984)
T ss_pred cCccccccccCCCC-ccceEeEeecCeeEeeecccccceecChh-hh
Confidence 1 12333 57999999999999999999999999998 43
No 49
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=83.50 E-value=14 Score=43.33 Aligned_cols=8 Identities=38% Similarity=0.978 Sum_probs=4.2
Q ss_pred CCCCeeeec
Q 003014 244 DTGIVYYYN 252 (857)
Q Consensus 244 ~~Gr~YYyN 252 (857)
++|.+|| |
T Consensus 652 ~~~v~y~-~ 659 (694)
T KOG4264|consen 652 PTDVVYF-D 659 (694)
T ss_pred cCCceee-C
Confidence 4555555 5
No 50
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=82.89 E-value=35 Score=37.75 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=8.0
Q ss_pred CCCCCCCCCCCCC
Q 003014 112 IQHQIYPTYPSLP 124 (857)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (857)
.||...|.|+..+
T Consensus 285 p~q~~~p~y~~~~ 297 (389)
T KOG2932|consen 285 PQQFGFPSYPTTE 297 (389)
T ss_pred CCCCCCCcCCccc
Confidence 4555577777655
No 51
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=81.68 E-value=71 Score=40.58 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=18.3
Q ss_pred CCCChHHHHHhhhcC--------chhhcccCCCCHHHHHHH
Q 003014 710 PQASWTESRPKLEKD--------PQGRATNADLDSSDREKL 742 (857)
Q Consensus 710 p~ssW~E~~~~l~kD--------~r~ra~~~~Ls~~drekL 742 (857)
+..-|-|.....-.- .-|-....+|+.++||+|
T Consensus 758 ~~~~~~e~~~r~~~~~lp~~~gph~f~~~~pgl~~lererl 798 (982)
T PF03154_consen 758 PVPNPLEHFRRHGALGLPPPPGPHPFAPFHPGLNPLERERL 798 (982)
T ss_pred CCCccchhhhcccccCCCCCCCCCccccCCCCCChHHHHHH
Confidence 456787776643221 112222467788888776
No 52
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=80.78 E-value=75 Score=41.15 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=4.2
Q ss_pred ccCCCCCCC
Q 003014 47 TSWMPTIPS 55 (857)
Q Consensus 47 ~~~~~~~~~ 55 (857)
|.++||.|+
T Consensus 1457 p~ysptsp~ 1465 (1605)
T KOG0260|consen 1457 PNYSPTSPS 1465 (1605)
T ss_pred CCCCCCCCc
Confidence 444444444
No 53
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=80.73 E-value=11 Score=45.63 Aligned_cols=27 Identities=4% Similarity=0.003 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCC
Q 003014 161 LPAHGMPNPSVSQIDAQPPGLSSVRTA 187 (857)
Q Consensus 161 ~p~~g~~~p~~~~p~~~ppg~~~~~~~ 187 (857)
.++.|++++..+.-++-++++.+.|-.
T Consensus 244 ~q~SG~~~~n~p~vs~~e~~~~gSgnp 270 (944)
T KOG4307|consen 244 KQFSGNKLGNNPDVSSRENHIQGSGNP 270 (944)
T ss_pred cccCCCCCCCCCCcCcCccccccCCCh
Confidence 344566555544444445555554443
No 54
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=19 Score=43.25 Aligned_cols=60 Identities=18% Similarity=-0.017 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 88 DFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPA 153 (857)
Q Consensus 88 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~~~pp~~~~~~ 153 (857)
+-+-+.+.|-.|+.+.|.+.-. +.|-.-.+.=-| ++|+++-+.||.++|+.+||+....+
T Consensus 432 nv~~~s~prgs~~~~~H~s~~~-----pr~r~r~~~yqm-~~P~~~~~pP~Vpsg~~~pp~~~~~~ 491 (861)
T KOG3161|consen 432 NVPESSLPRGSMPYADHYSTFS-----PRDRMRSSPYQM-PPPQPYGPPPPVPSGMYAPPYDSRRI 491 (861)
T ss_pred CCCcccCCCCCCCcccccCccC-----cccchhcCCCCC-CCCCcCCCCCCCCccccCCCcccccC
Confidence 3444566688888888854421 111111111122 23566666788889999998887743
No 55
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=76.39 E-value=14 Score=47.28 Aligned_cols=8 Identities=25% Similarity=0.276 Sum_probs=4.3
Q ss_pred CCCCCCCC
Q 003014 120 YPSLPPIG 127 (857)
Q Consensus 120 ~~~~~~~~ 127 (857)
|+..|.|+
T Consensus 147 v~~~~~~~ 154 (1639)
T KOG0905|consen 147 VSLLPDMY 154 (1639)
T ss_pred cccCcccC
Confidence 55555554
No 56
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.72 E-value=50 Score=39.79 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=9.3
Q ss_pred CCChHHHHHhhhc
Q 003014 711 QASWTESRPKLEK 723 (857)
Q Consensus 711 ~ssW~E~~~~l~k 723 (857)
..+|.+++..|-+
T Consensus 633 ~~tW~evf~~lfn 645 (728)
T KOG4592|consen 633 TATWLEVFSDLFN 645 (728)
T ss_pred HHHHHHHHHHHHH
Confidence 4688888877643
No 57
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=74.38 E-value=2.5 Score=44.37 Aligned_cols=33 Identities=33% Similarity=0.756 Sum_probs=29.3
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|| .+|..-+|-.||+||.++.+++|-|.-|-+
T Consensus 93 PLP-pgWav~~T~~grkYYIDHn~~tTHW~HPle 125 (271)
T KOG1891|consen 93 PLP-PGWAVEFTTEGRKYYIDHNNRTTHWVHPLE 125 (271)
T ss_pred CCC-CCcceeeEecCceeEeecCCCcccccChhh
Confidence 355 689998888999999999999999999966
No 58
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.74 E-value=23 Score=43.33 Aligned_cols=10 Identities=10% Similarity=0.325 Sum_probs=5.9
Q ss_pred CCCCCcEEEE
Q 003014 233 EQLDAWTAHK 242 (857)
Q Consensus 233 ~~~~~W~e~~ 242 (857)
.++..|.-+.
T Consensus 491 ~~~~~~~~~~ 500 (624)
T PRK14959 491 SGPRTWDGFL 500 (624)
T ss_pred CCcccHHHHH
Confidence 3666786544
No 59
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=71.84 E-value=4.7 Score=48.68 Aligned_cols=80 Identities=19% Similarity=0.372 Sum_probs=59.1
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcc-cc-CCCCCCcEEEEcCCCceEEEeCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPIS-ME-HLTGTDWALVTTNDGKKYYYNSKM 307 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~-~~-~~~~~~W~e~~t~~Gr~YyyN~~T 307 (857)
....++..|+-.-+..|-+||.++.|+.++|-+|. +...+ + .|.. .. -+| .+|...-++-=..|||++..
T Consensus 219 ~~gplp~nwemayte~gevyfiDhntkttswLdpr-l~kka-K-----~~eeckd~elP-ygWeki~dpiYg~yyvdHiN 290 (984)
T KOG3209|consen 219 NLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPR-LTKKA-K-----PPEECKDQELP-YGWEKIEDPIYGTYYVDHIN 290 (984)
T ss_pred ccCCCCccceEeEeecCeeEeeecccccceecChh-hhccc-C-----Chhhccccccc-ccccccCCccceeEEecccc
Confidence 44458889999999999999999999999999998 32111 0 0100 00 133 67988876644599999999
Q ss_pred CeeeccCChh
Q 003014 308 KVSSWQIPSE 317 (857)
Q Consensus 308 ~~S~We~P~e 317 (857)
..|+++-|-.
T Consensus 291 ~~sq~enpvl 300 (984)
T KOG3209|consen 291 RKSQYENPVL 300 (984)
T ss_pred hhhhhccchh
Confidence 9999999854
No 60
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.99 E-value=16 Score=42.40 Aligned_cols=20 Identities=50% Similarity=0.800 Sum_probs=12.5
Q ss_pred CCCCCCCCCCCCCCCC-CCCC
Q 003014 105 PSNSGSAIQHQIYPTY-PSLP 124 (857)
Q Consensus 105 ~~~~~~~~~~~~~~~~-~~~~ 124 (857)
..+++...|+|-||+| |+.+
T Consensus 407 ~~~s~p~pq~qNyppp~p~f~ 427 (483)
T KOG2236|consen 407 SDNSGPSPQQQNYPPPSPSFP 427 (483)
T ss_pred cCCCCCCcccCCCCCCCCCCC
Confidence 3444566788888877 4444
No 61
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=66.91 E-value=29 Score=44.07 Aligned_cols=48 Identities=27% Similarity=0.189 Sum_probs=28.6
Q ss_pred ceeccccccccccccccccccccCCC-CCCCCCCCCCCCCCCCCCCCCC
Q 003014 26 SVRTFSDSTVATSSATALSTTTSWMP-TIPSFSTPPGLFVTPQTQAPPG 73 (857)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (857)
|-.+|.-+-..|+.-.++.+.++.+- |.-+.|+|++-..+-|+.|-||
T Consensus 1384 Sgetfds~lpptddedfyttf~lvTd~tt~s~~~p~p~~Rtt~t~~~p~ 1432 (1591)
T KOG3514|consen 1384 SGETFDSSLPPTDDEDFYTTFPLVTDRTTLSKPAPRPNLRTTGTTGAPG 1432 (1591)
T ss_pred ccccccccCCCccccccccccccccccccccCCCCCccccccccccCcc
Confidence 34455555555555555555555442 2225677777778888888887
No 62
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=65.66 E-value=2.7e+02 Score=34.43 Aligned_cols=21 Identities=24% Similarity=0.181 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 003014 146 LPFLPYPAAYPSPFPLPAHGM 166 (857)
Q Consensus 146 pp~~~~~~~~~g~~~~p~~g~ 166 (857)
||...+-|+.+.|+.+...|.
T Consensus 302 p~~pv~ka~~~~p~~lq~~ks 322 (1034)
T KOG0608|consen 302 PPHPVVKAPGPNPTMLQHNKS 322 (1034)
T ss_pred CCCccccCCCCCchHhhhccc
Confidence 333344555555555555444
No 63
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=64.54 E-value=2.6 Score=48.29 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=21.1
Q ss_pred CcE-----EEEcCCCceEEEeCCCCeeeccCChhhHHh
Q 003014 289 DWA-----LVTTNDGKKYYYNSKMKVSSWQIPSEVTEL 321 (857)
Q Consensus 289 ~W~-----e~~t~~Gr~YyyN~~T~~S~We~P~e~~~~ 321 (857)
+|. ...+...|.|+||..-|+|||+.|..+..+
T Consensus 369 PW~d~~g~~~~~~~eKLYHyN~~GGtSTW~LP~~w~~~ 406 (425)
T PF12905_consen 369 PWNDANGKKLDDDEEKLYHYNPDGGTSTWTLPDSWAGL 406 (425)
T ss_dssp EE--TTS-B--GGG-EEEEEESS-CEEEEE--HHHCT-
T ss_pred ecccccCcccCCCcceeEEEcCCCCeeeeeCCccccCC
Confidence 487 234456799999999999999999998763
No 64
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=63.89 E-value=11 Score=45.71 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=53.9
Q ss_pred CCCCcEEEEcC-CCCeeeecCCCCceeccCCCCCCCCC--CCCCCCCCCcc--ccCCCCCCcEEEEc-CCCceEEEeCCC
Q 003014 234 QLDAWTAHKTD-TGIVYYYNAVTGESTYEKPAGFKGEP--DKVPVQPTPIS--MEHLTGTDWALVTT-NDGKKYYYNSKM 307 (857)
Q Consensus 234 ~~~~W~e~~~~-~Gr~YYyN~~T~~StWekP~~l~~~~--~~~~~qp~P~~--~~~~~~~~W~e~~t-~~Gr~YyyN~~T 307 (857)
....|..+.+. +|+.|||+..|+.++|+- ....... ...+..-.|.. ...-..+.|..++. ..+..+|||..+
T Consensus 269 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (650)
T KOG1450|consen 269 KSTVWETSTDALTGNPLYYYSDTGSTTWSG-HHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSH 347 (650)
T ss_pred CCcccccchhhcccccceeecccCcccccC-CCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCC
Confidence 45679999886 899999999999999996 2111110 00000001111 11112367887764 577899999999
Q ss_pred CeeeccCChh
Q 003014 308 KVSSWQIPSE 317 (857)
Q Consensus 308 ~~S~We~P~e 317 (857)
+++.|...-.
T Consensus 348 net~~~d~~~ 357 (650)
T KOG1450|consen 348 NETSFEDWSS 357 (650)
T ss_pred CCccccchhh
Confidence 9999988755
No 65
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=63.32 E-value=1.9e+02 Score=34.20 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=8.4
Q ss_pred CCCCCCCCCCcccCCC
Q 003014 173 QIDAQPPGLSSVRTAA 188 (857)
Q Consensus 173 ~p~~~ppg~~~~~~~~ 188 (857)
++-+|+||+..+|..+
T Consensus 466 t~~~q~~~~~~~~~~~ 481 (524)
T KOG0702|consen 466 TPQVQQPGGSHFGLAG 481 (524)
T ss_pred cccccCCCCCCccccc
Confidence 3445556665555444
No 66
>KOG4822 consensus Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation [RNA processing and modification; Signal transduction mechanisms]
Probab=63.08 E-value=94 Score=40.13 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=12.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 003014 96 RPSVPTPSAPSNSGSAIQHQIYP 118 (857)
Q Consensus 96 ~~~~p~~~~~~~~~~~~~~~~~~ 118 (857)
||+.|.-+.-.+|+++.-||+..
T Consensus 1728 ~~~~~~d~Fr~rpqntsRPpSmh 1750 (1906)
T KOG4822|consen 1728 RPSSLPDPFRGRPQNTSRPPSMH 1750 (1906)
T ss_pred CCCCCCcccccCCCCCCCCCcee
Confidence 45555555555555555544443
No 67
>PTZ00234 variable surface protein Vir12; Provisional
Probab=62.01 E-value=43 Score=39.26 Aligned_cols=31 Identities=13% Similarity=-0.053 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 136 RPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSV 171 (857)
Q Consensus 136 ~pp~~~~~~~pp~~~~~~~~~g~~~~p~~g~~~p~~ 171 (857)
..|+++|.|.. .|.+..+ .|.+..+.|...-
T Consensus 323 ~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~l~ 353 (433)
T PTZ00234 323 MPHGSKDIQQV---SYTTLPT--APEVNPDTSNFLE 353 (433)
T ss_pred ccCCCCCCCCc---ccccCCC--CCcCCCCCCchhh
Confidence 45666666655 3333322 3356666654433
No 68
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=61.57 E-value=57 Score=40.81 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=11.2
Q ss_pred HhhhcccccCchhhcccCH
Q 003014 477 EKELPKIVFDPRFKAIQSQ 495 (857)
Q Consensus 477 e~~~~~i~~DPRy~al~~~ 495 (857)
+.+++ +..||.|..+...
T Consensus 1024 ~~v~~-v~qdPiw~~~~~a 1041 (1114)
T KOG3753|consen 1024 ESVIK-VLQDPIWLLMAPA 1041 (1114)
T ss_pred cchhh-cccCchhhhccCC
Confidence 34455 6678888776543
No 69
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=60.86 E-value=1.4e+02 Score=36.85 Aligned_cols=13 Identities=23% Similarity=0.376 Sum_probs=8.6
Q ss_pred CCCCCCCCcEEEE
Q 003014 230 SVNEQLDAWTAHK 242 (857)
Q Consensus 230 ~~~~~~~~W~e~~ 242 (857)
-+.+.++||---+
T Consensus 1078 i~~edpSGWw~gk 1090 (1106)
T KOG0162|consen 1078 IMREDPSGWWLGK 1090 (1106)
T ss_pred EeccCCCcchhhc
Confidence 4456777887655
No 70
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.85 E-value=25 Score=39.45 Aligned_cols=19 Identities=11% Similarity=0.142 Sum_probs=10.1
Q ss_pred cccccccccCCCCCCCCCC
Q 003014 40 ATALSTTTSWMPTIPSFST 58 (857)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~ 58 (857)
+|-.-|+..|.+..=++.+
T Consensus 66 ~tYnIPV~iWlldtyP~~p 84 (365)
T KOG2391|consen 66 VTYNIPVIIWLLDTYPYYP 84 (365)
T ss_pred CcccceEEEEecccCCCCC
Confidence 3444455666666555443
No 71
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=59.76 E-value=8.1 Score=48.88 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCCCCCcEEEEc------CCCCeeeecCCC
Q 003014 232 NEQLDAWTAHKT------DTGIVYYYNAVT 255 (857)
Q Consensus 232 ~~~~~~W~e~~~------~~Gr~YYyN~~T 255 (857)
+..+..|+++.- -+|-+-+.|..-
T Consensus 127 eNmP~pWe~~~evkvlyh~~Gaitfvne~p 156 (2365)
T COG5178 127 ENMPSPWEDVSEVKVLYHCHGAITFVNEVP 156 (2365)
T ss_pred hcCCChHhhhheeeEEeeccceEEEeecCc
Confidence 447888986542 268888877543
No 72
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=59.31 E-value=1.4e+02 Score=32.64 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=6.3
Q ss_pred Ccccceecccc
Q 003014 22 PVQASVRTFSD 32 (857)
Q Consensus 22 ~~~~~~~~~~~ 32 (857)
+||-+|..-|+
T Consensus 156 ~Vq~~~~~~fq 166 (279)
T PF07271_consen 156 QVQPSFRPLFQ 166 (279)
T ss_pred ccccccCcccc
Confidence 45666665554
No 73
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=58.92 E-value=16 Score=42.65 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 003014 523 AAIEGFKQLLEE 534 (857)
Q Consensus 523 ~a~e~F~~LL~e 534 (857)
.|+-+|.+|+.+
T Consensus 543 SAkVDf~qL~DN 554 (817)
T KOG1925|consen 543 SAKVDFEQLTDN 554 (817)
T ss_pred hhhccHHHHHHH
Confidence 344445555443
No 74
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=58.44 E-value=99 Score=35.54 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=7.2
Q ss_pred cccCCCCCCCCCCCCCCc
Q 003014 199 QLVGTSGNTEAPPSGTDK 216 (857)
Q Consensus 199 q~~~~~~~~~~~~~~~~~ 216 (857)
|.++++|. +-||++.
T Consensus 487 ~~~~~p~~---~~~gi~~ 501 (531)
T KOG1960|consen 487 PGTGTPGL---TTPGVDP 501 (531)
T ss_pred CCCCCCCC---ccCCcCc
Confidence 34445554 4455553
No 75
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=58.09 E-value=41 Score=37.37 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=11.9
Q ss_pred CCHHHHHHHHH-HHHHHhhhHHH
Q 003014 561 LDRKDRELLLN-ERVLPLKRAAE 582 (857)
Q Consensus 561 l~~~eRe~LF~-Eyi~~Lkk~e~ 582 (857)
|.+-|.|..++ +||.+|-.+|.
T Consensus 332 ITRADIE~ALRDDYVRRLl~kEa 354 (407)
T PF04625_consen 332 ITRADIERALRDDYVRRLLHKEA 354 (407)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455565444 47777654443
No 76
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=57.97 E-value=1e+02 Score=38.80 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=3.9
Q ss_pred CCCCeee
Q 003014 244 DTGIVYY 250 (857)
Q Consensus 244 ~~Gr~YY 250 (857)
+.|..+|
T Consensus 921 ~~gs~~~ 927 (1114)
T KOG3753|consen 921 PHGSLFY 927 (1114)
T ss_pred CCccccC
Confidence 4555555
No 77
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=56.47 E-value=3.6e+02 Score=35.75 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 003014 137 PPQMGVRPWLPFLPYPAAY 155 (857)
Q Consensus 137 pp~~~~~~~pp~~~~~~~~ 155 (857)
+|..-.+.+||+..-++++
T Consensus 1824 ~P~~~v~~~pP~p~s~ap~ 1842 (1958)
T KOG0391|consen 1824 APAQVVHTQPPKPISPAPF 1842 (1958)
T ss_pred CCccccccCCCCCCCCCCC
Confidence 3333334455554444433
No 78
>KOG3546 consensus Collagens (type XV) [Extracellular structures]
Probab=55.15 E-value=2.6e+02 Score=34.10 Aligned_cols=17 Identities=35% Similarity=0.424 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003014 140 MGVRPWLPFLPYPAAYP 156 (857)
Q Consensus 140 ~~~~~~pp~~~~~~~~~ 156 (857)
||+.|-+|..+-|+.++
T Consensus 830 ~s~~pg~pg~pgp~g~~ 846 (1167)
T KOG3546|consen 830 GSSLPGPPGPPGPRGYP 846 (1167)
T ss_pred cCCCCCCCCCCCCCCCC
Confidence 33334444434444333
No 79
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=55.06 E-value=1.1e+02 Score=37.46 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=13.1
Q ss_pred ccccccccccCCCCCCCCCCCCC
Q 003014 39 SATALSTTTSWMPTIPSFSTPPG 61 (857)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~ 61 (857)
|+.-.+..-+.+++.+++|+|+.
T Consensus 176 lk~~~gg~a~p~~~~qpPplPav 198 (944)
T KOG4307|consen 176 LKDPFGGDAGPYKFQQPPPLPAV 198 (944)
T ss_pred ecccCCCCCCCCccCCCCCCCCc
Confidence 44445555566666666665543
No 80
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=54.98 E-value=63 Score=41.86 Aligned_cols=9 Identities=33% Similarity=0.242 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 003014 133 PLLRPPQMG 141 (857)
Q Consensus 133 ~~~~pp~~~ 141 (857)
.|++||+.+
T Consensus 166 ~pg~pP~~s 174 (1639)
T KOG0905|consen 166 VPGVPPQHS 174 (1639)
T ss_pred CCCCCCCCC
Confidence 344444444
No 81
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=54.90 E-value=3.2e+02 Score=34.31 Aligned_cols=6 Identities=33% Similarity=0.263 Sum_probs=2.3
Q ss_pred cccccc
Q 003014 32 DSTVAT 37 (857)
Q Consensus 32 ~~~~~~ 37 (857)
+..+.|
T Consensus 529 ~~~v~t 534 (756)
T KOG2375|consen 529 QKPVFT 534 (756)
T ss_pred cccccc
Confidence 333333
No 82
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.49 E-value=5.4e+02 Score=32.41 Aligned_cols=8 Identities=25% Similarity=0.879 Sum_probs=3.9
Q ss_pred ChHHHHHh
Q 003014 713 SWTESRPK 720 (857)
Q Consensus 713 sW~E~~~~ 720 (857)
.|+-++..
T Consensus 412 ewErar~q 419 (1118)
T KOG1029|consen 412 EWERARRQ 419 (1118)
T ss_pred HHHHHHHH
Confidence 45555443
No 83
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=50.34 E-value=2.1e+02 Score=35.40 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHHH
Q 003014 632 DREVIFNEYVREL 644 (857)
Q Consensus 632 dr~~lFeeyi~~L 644 (857)
-|..||++.+...
T Consensus 721 IrmgIFeE~LARF 733 (1034)
T KOG0608|consen 721 IRMGIFEEDLARF 733 (1034)
T ss_pred HHhccCHHHHHHH
Confidence 4566777654443
No 84
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=49.72 E-value=99 Score=38.52 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=4.2
Q ss_pred CCCCCCCCCCC
Q 003014 128 VSPQGPLLRPP 138 (857)
Q Consensus 128 ~~~~~~~~~pp 138 (857)
.+|++|-+.|+
T Consensus 584 ~~p~~~~~~P~ 594 (756)
T KOG2375|consen 584 NPPTGTSVAPS 594 (756)
T ss_pred CCCCcceecCC
Confidence 33444433333
No 85
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=47.76 E-value=84 Score=37.50 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=7.8
Q ss_pred CCCCCCCCcccCCCCC
Q 003014 191 SHSAIPGHQLVGTSGN 206 (857)
Q Consensus 191 ~~~~~~g~q~~~~~~~ 206 (857)
++++.-|.=|..++.+
T Consensus 290 ~a~AIeGVfP~~tpd~ 305 (582)
T PF03276_consen 290 NAPAIEGVFPTTTPDL 305 (582)
T ss_pred cchhhcccccCCCccH
Confidence 4445555544444444
No 86
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.46 E-value=2.3e+02 Score=34.67 Aligned_cols=21 Identities=19% Similarity=-0.077 Sum_probs=9.9
Q ss_pred Ccccceecccccccccccccc
Q 003014 22 PVQASVRTFSDSTVATSSATA 42 (857)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~ 42 (857)
|.|-+.+.---|-.-++.-+|
T Consensus 426 ~l~r~~nv~~~s~prgs~~~~ 446 (861)
T KOG3161|consen 426 RLVRSNNVPESSLPRGSMPYA 446 (861)
T ss_pred hhhhccCCCcccCCCCCCCcc
Confidence 344455554444444444443
No 87
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=47.44 E-value=17 Score=42.46 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.7
Q ss_pred cCCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhh
Q 003014 283 EHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318 (857)
Q Consensus 283 ~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~ 318 (857)
.+|| .+|..++-..|-+.|||..|+..+|.+|=.|
T Consensus 153 epLP-eGW~~i~HnSGmPvylHr~tRVvt~SrPYfl 187 (650)
T KOG4334|consen 153 EPLP-EGWTVISHNSGMPVYLHRFTRVVTHSRPYFL 187 (650)
T ss_pred CcCC-CceEEEeecCCCceEEeeeeeeEeccCceee
Confidence 3566 7999999999999999999999999999776
No 88
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=47.19 E-value=1.7e+02 Score=29.91 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=24.7
Q ss_pred HHhccCccccccccccHHHHHH---HHHHHHHHHHH
Q 003014 617 DILRDDPRYKSVRHEDREVIFN---EYVRELKAAEE 649 (857)
Q Consensus 617 ~~L~~DpRy~~l~~~dr~~lFe---eyi~~L~~~e~ 649 (857)
.....||||..+.+.--.++|. .||+++...+.
T Consensus 30 k~~~rDPRFd~~~G~~~~~~f~k~Y~FL~d~r~~E~ 65 (168)
T PF06102_consen 30 KKKRRDPRFDSLSGEFNEDLFRKNYGFLDDYREKEI 65 (168)
T ss_pred CCCCCCCCcCccccccCHHHHHHhhhhHHHHHHHHH
Confidence 4467899999998876666776 57888766554
No 89
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=46.69 E-value=3.7e+02 Score=31.31 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 003014 638 NEYVRELKA 646 (857)
Q Consensus 638 eeyi~~L~~ 646 (857)
.-||+.|+.
T Consensus 252 ~~hi~~l~~ 260 (552)
T KOG2129|consen 252 KLHIDKLQA 260 (552)
T ss_pred HHHHHHHHH
Confidence 345555544
No 90
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=43.47 E-value=6.7e+02 Score=30.27 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=19.0
Q ss_pred HhHhcCcccccccCCCCcccceeccccccccccc
Q 003014 6 AVEDAGLGSSTSTNSQPVQASVRTFSDSTVATSS 39 (857)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (857)
+++.+|.+..++++.+=++- +.|.-+..++.+
T Consensus 199 rie~~~~~~~~~~e~~r~~~--~~~~~l~~q~~g 230 (538)
T KOG1049|consen 199 RIEFAGGGLERTTEPLRRQR--DLFGELKIQIPG 230 (538)
T ss_pred hhhhcccccccccccccccc--cCcchhhhccCC
Confidence 46677777777766553222 666666666544
No 91
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=43.28 E-value=1.6e+02 Score=30.01 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=7.8
Q ss_pred CCCCCCCCccccCC
Q 003014 66 PQTQAPPGLLTLRT 79 (857)
Q Consensus 66 ~~~~~~~~~~~~~~ 79 (857)
+|..+.||+.-.+.
T Consensus 97 ag~~~g~G~ar~~G 110 (177)
T KOG3168|consen 97 AGAARGPGIARVAG 110 (177)
T ss_pred ccccCCcccccccC
Confidence 55555666555544
No 92
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=43.02 E-value=31 Score=39.40 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=46.3
Q ss_pred EEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 241 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 241 ~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
..+.+|.+|-+|..|++..|.....-. . ...|. -..+-.-+.+.+|..|-+|..||+..|..+..
T Consensus 125 v~~~~g~l~ald~~tG~~~W~~~~~~~--~-----~ssP~-----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 125 IGSEKGQVYALNAEDGEVAWQTKVAGE--A-----LSRPV-----VSDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEcCCCEEEEEECCCCCCcccccCCCc--e-----ecCCE-----EECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 345689999999999999999875321 0 11121 11233445678999999999999999998753
No 93
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=42.90 E-value=1.4e+02 Score=36.80 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q 003014 110 SAIQHQIYPTY 120 (857)
Q Consensus 110 ~~~~~~~~~~~ 120 (857)
..-++++|.++
T Consensus 1022 S~L~~~~Y~S~ 1032 (1136)
T KOG4786|consen 1022 SPLQQQFYQSP 1032 (1136)
T ss_pred ChhhhccccCC
Confidence 34667777743
No 94
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=41.41 E-value=1.9e+02 Score=34.05 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=8.4
Q ss_pred cceeccccccccc
Q 003014 25 ASVRTFSDSTVAT 37 (857)
Q Consensus 25 ~~~~~~~~~~~~~ 37 (857)
-+|.||.-|+-+-
T Consensus 431 ~~F~m~~K~~~~~ 443 (654)
T COG5180 431 KSFNMFIKSKEAH 443 (654)
T ss_pred ccccccccccccc
Confidence 4677777766554
No 95
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=41.30 E-value=5.4e+02 Score=33.94 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=30.0
Q ss_pred CCChHHHHHHhccCcccccc------ccccHHHHHHHHHHHHHHH
Q 003014 609 SSRWSKVKDILRDDPRYKSV------RHEDREVIFNEYVRELKAA 647 (857)
Q Consensus 609 ~T~W~ev~~~L~~DpRy~~l------~~~dr~~lFeeyi~~L~~~ 647 (857)
.+-|.+++.+|+++.-|... +.+.+..+++-|-+.|.+.
T Consensus 908 ~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~ 952 (1265)
T KOG1920|consen 908 ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREE 952 (1265)
T ss_pred ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHh
Confidence 56899999999999998852 2345677888888888653
No 96
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=40.76 E-value=1.8e+02 Score=32.86 Aligned_cols=31 Identities=26% Similarity=0.511 Sum_probs=13.0
Q ss_pred ccccccccCCCCCCCC-CCcEEEEcCCCCeee
Q 003014 220 VHDVSSRIGASVNEQL-DAWTAHKTDTGIVYY 250 (857)
Q Consensus 220 ~~~~~t~~~~~~~~~~-~~W~e~~~~~Gr~YY 250 (857)
|.+++-...++++... -.|-...-..--+||
T Consensus 211 vaEctlKeSAaiNqiLGrRWH~LSrEEQAKYy 242 (421)
T KOG3248|consen 211 VAECTLKESAAINQILGRRWHALSREEQAKYY 242 (421)
T ss_pred HHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHH
Confidence 3334333444444322 336554444434444
No 97
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=40.23 E-value=3.4e+02 Score=26.61 Aligned_cols=69 Identities=20% Similarity=0.379 Sum_probs=37.2
Q ss_pred chHhhhc----ccccCchhhc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccHHHH
Q 003014 475 KWEKELP----KIVFDPRFKA--IQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTF 548 (857)
Q Consensus 475 tWe~~~~----~i~~DPRy~a--l~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~LL~e~~~~i~~~t~W~e~ 548 (857)
+|-+++- .|++-|-+.- .+++ .+||+.|-=++++.-.+.+..+ .+--++|+..|.+...
T Consensus 7 ~W~K~~~~G~~ii~~G~~l~~y~tPTe---EeL~~r~sPELrkr~~~~r~~R-q~e~~~~~~~lKe~sk----------- 71 (128)
T PF07960_consen 7 RWAKMLVAGAVIIGGGPALVKYTTPTE---EELFKRYSPELRKRYLENRELR-QQEFDEFMKILKETSK----------- 71 (128)
T ss_pred HHHHHHHhcceeEeechHHheecCCCH---HHHHHhcCHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhc-----------
Confidence 4555442 3444554333 3443 6789988776665544333222 2223567777776521
Q ss_pred HHHhcCCchhhcCC
Q 003014 549 KKKWGSDPRFEALD 562 (857)
Q Consensus 549 ~~k~~~Dprfkal~ 562 (857)
.++|.|.+..
T Consensus 72 ----SdkPIW~~~~ 81 (128)
T PF07960_consen 72 ----SDKPIWKTGK 81 (128)
T ss_pred ----cCCCceeeCC
Confidence 2578888754
No 98
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=39.69 E-value=51 Score=37.11 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=42.3
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q 003014 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 243 ~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
+.+|.+|-||..|++..|........ ...| ....+..-+.+.+|.+|-+|..||+..|...
T Consensus 72 ~~~g~v~a~d~~tG~~~W~~~~~~~~-------~~~p-----~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 72 DADGTVVALDAETGKRLWRVDLDERL-------SGGV-----GADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCCCeEEEEEccCCcEeeeecCCCCc-------ccce-----EEcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 34789999999999999986543210 0011 1223455566778899999999999999765
No 99
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=39.65 E-value=1.6e+02 Score=34.52 Aligned_cols=7 Identities=43% Similarity=0.467 Sum_probs=2.8
Q ss_pred ceecccc
Q 003014 26 SVRTFSD 32 (857)
Q Consensus 26 ~~~~~~~ 32 (857)
+++.||+
T Consensus 478 ~~~~FF~ 484 (654)
T COG5180 478 SYKTFFP 484 (654)
T ss_pred HHhccCC
Confidence 3344443
No 100
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=39.10 E-value=37 Score=38.24 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=46.0
Q ss_pred EEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 241 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 241 ~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
..+.+|.+|-+|..|++-.|....... . ...| +-..+..-+.+.+|..|-+|..|++..|+...
T Consensus 110 v~~~~g~l~ald~~tG~~~W~~~~~~~--~-----~~~p-----~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 110 VGTEKGEVIALDAEDGKELWRAKLSSE--V-----LSPP-----LVANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred EEcCCCEEEEEECCCCcEeeeeccCce--e-----ecCC-----EEECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 345689999999999999998764211 0 0111 11235555667899999999999999998754
No 101
>PLN03162 golden-2 like transcription factor; Provisional
Probab=38.76 E-value=2e+02 Score=32.72 Aligned_cols=9 Identities=11% Similarity=0.014 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 003014 131 QGPLLRPPQ 139 (857)
Q Consensus 131 ~~~~~~pp~ 139 (857)
-+||.++..
T Consensus 372 v~mWp~h~~ 380 (526)
T PLN03162 372 VHMWQQPAV 380 (526)
T ss_pred ccccccccc
Confidence 355554443
No 102
>PRK10263 DNA translocase FtsK; Provisional
Probab=36.96 E-value=2.7e+02 Score=37.21 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=6.4
Q ss_pred HHHHHHHhcCCC
Q 003014 460 KFKEMLKERGVA 471 (857)
Q Consensus 460 aFk~mL~e~~V~ 471 (857)
...+-|++.+|.
T Consensus 893 ~l~~~L~~F~i~ 904 (1355)
T PRK10263 893 LVEARLADFRIK 904 (1355)
T ss_pred HHHHHHHHCCcc
Confidence 344455666654
No 103
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=36.92 E-value=2e+02 Score=33.96 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=8.3
Q ss_pred cccCCCCCCCCCCC
Q 003014 46 TTSWMPTIPSFSTP 59 (857)
Q Consensus 46 ~~~~~~~~~~~~~~ 59 (857)
-....||+|.|.+|
T Consensus 142 ss~~sPttpafqpp 155 (605)
T KOG4217|consen 142 SSPPSPTTPAFQPP 155 (605)
T ss_pred CCCCCCCCCCCCCC
Confidence 34455667777655
No 104
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=36.91 E-value=27 Score=40.81 Aligned_cols=41 Identities=17% Similarity=0.270 Sum_probs=36.3
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEP 270 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~ 270 (857)
-.+.++.||+...-..|-.-||+..|+.-||.+|--+.+..
T Consensus 151 ~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYflGtGs 191 (650)
T KOG4334|consen 151 KSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFLGTGS 191 (650)
T ss_pred CCCcCCCceEEEeecCCCceEEeeeeeeEeccCceeecccc
Confidence 55779999999999999999999999999999998775443
No 105
>PF05518 Totivirus_coat: Totivirus coat protein; InterPro: IPR008871 This family of proteins contain the coat proteins of the Totiviruses.
Probab=36.85 E-value=3.5e+02 Score=33.87 Aligned_cols=7 Identities=57% Similarity=0.980 Sum_probs=2.8
Q ss_pred CCCCCCC
Q 003014 96 RPSVPTP 102 (857)
Q Consensus 96 ~~~~p~~ 102 (857)
-|+.|++
T Consensus 683 ~P~~~~~ 689 (759)
T PF05518_consen 683 APLRPTP 689 (759)
T ss_pred CCCCccc
Confidence 3344443
No 106
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=36.70 E-value=49 Score=37.08 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCC
Q 003014 94 GLRPSVPTPSAP 105 (857)
Q Consensus 94 ~~~~~~p~~~~~ 105 (857)
-+|||+|.+..-
T Consensus 9 ~~~p~~~pp~ar 20 (362)
T KOG1546|consen 9 CQRPMAPPPGAR 20 (362)
T ss_pred CCCCCCCCCCCc
Confidence 467887776553
No 107
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=36.43 E-value=2.5e+02 Score=34.00 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCC
Q 003014 115 QIYPTYPSLPPI 126 (857)
Q Consensus 115 ~~~~~~~~~~~~ 126 (857)
+..+.+.+.|.+
T Consensus 449 ~~q~~~~~~P~~ 460 (600)
T KOG1676|consen 449 QVQPQQTMAPSA 460 (600)
T ss_pred cccCCCCCCccc
Confidence 334445555544
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.16 E-value=1e+03 Score=30.23 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=7.0
Q ss_pred CCcEEE-EcCCCc
Q 003014 288 TDWALV-TTNDGK 299 (857)
Q Consensus 288 ~~W~e~-~t~~Gr 299 (857)
+-|..- ++.||+
T Consensus 233 ~IW~LsDvd~DGk 245 (1118)
T KOG1029|consen 233 HIWTLSDVDGDGK 245 (1118)
T ss_pred hheeeeccCCCCc
Confidence 457663 356774
No 109
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=35.84 E-value=1.4e+02 Score=38.97 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 113 QHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGM 166 (857)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~~~pp~~~~~~~~~g~~~~p~~g~ 166 (857)
+|.+-|.|+-+|+|=++|++|-.+| +||- ||.|.|--.-+|.+ .|.+||
T Consensus 864 ~P~~~~a~adl~~mfPtpPsleqhp---~~Fs-P~~mn~k~~gs~~t-~p~~gm 912 (2238)
T KOG3600|consen 864 HPMGPPAYADLPGMFPTPPSLEQHP---GPFS-PPGMNQKMMGSGGT-PPQMGM 912 (2238)
T ss_pred CCCCCccccCccccCCCCCccccCC---CCCC-CCCcchhccCCCCC-CCccee
Confidence 3444455677777766555543332 2344 55555554334444 444444
No 110
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=35.30 E-value=4.5e+02 Score=31.52 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCCC
Q 003014 51 PTIPSFSTPPGLFV 64 (857)
Q Consensus 51 ~~~~~~~~~~~~~~ 64 (857)
+--++|-.+-++-|
T Consensus 469 ~gq~~~~~~~~~~g 482 (694)
T KOG4264|consen 469 RGQGTVTRGTGGYG 482 (694)
T ss_pred cCCceeeccccccC
Confidence 33344444444333
No 111
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=34.79 E-value=9.6e+02 Score=29.81 Aligned_cols=12 Identities=17% Similarity=-0.133 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 003014 564 KDRELLLNERVL 575 (857)
Q Consensus 564 ~eRe~LF~Eyi~ 575 (857)
+.+.+-|++-+.
T Consensus 246 ~l~~KQ~rk~me 257 (811)
T KOG4364|consen 246 KLLLKQLRKNME 257 (811)
T ss_pred hHHHHHHHHhHH
Confidence 334444444433
No 112
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=34.21 E-value=7.4e+02 Score=29.22 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcCCCC
Q 003014 458 IIKFKEMLKERGVAP 472 (857)
Q Consensus 458 ~~aFk~mL~e~~V~~ 472 (857)
.+..++|-+++||++
T Consensus 88 qqe~~~LyKe~ginP 102 (429)
T PRK00247 88 QQKQKDLNKEYGYNP 102 (429)
T ss_pred HHHHHHHHHHcCCCc
Confidence 334444555555554
No 113
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=34.16 E-value=4e+02 Score=34.08 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHh
Q 003014 456 ECIIKFKEMLKE 467 (857)
Q Consensus 456 Ea~~aFk~mL~e 467 (857)
++...=++||++
T Consensus 800 ~~~~~~~~~~~~ 811 (824)
T PRK07764 800 DAEEVAMELLEE 811 (824)
T ss_pred cHHHHHHHHHHH
Confidence 344444455554
No 114
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=33.59 E-value=7.8e+02 Score=31.86 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCCCC
Q 003014 53 IPSFSTPPGLFVTPQT 68 (857)
Q Consensus 53 ~~~~~~~~~~~~~~~~ 68 (857)
+|++..|=.|.|..|.
T Consensus 513 Pp~g~spHpl~g~as~ 528 (1229)
T KOG2133|consen 513 PPPGRSPHPLYGAASK 528 (1229)
T ss_pred CCCCCCCCCCCCcccc
Confidence 4555666447777665
No 115
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=32.54 E-value=5.4e+02 Score=28.82 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHhhhcCCCCCCCChHHHHHHhccCccccccccccHHHHHHHHHHHHHHHH
Q 003014 598 SMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAE 648 (857)
Q Consensus 598 ~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~~~dr~~lFeeyi~~L~~~e 648 (857)
.-|++.+.|+. ..|.++|.....+. |+++. ...+||..++.+.
T Consensus 107 KklRd~gKIDk-h~YR~LYrKAKGn~-FKNK~------~L~e~I~k~KaE~ 149 (357)
T PTZ00436 107 RKYREEKKIDR-HIYRELYVKAKGNV-FRNKR------NLMEHIHKVKNEK 149 (357)
T ss_pred HHHHhcCCCCH-HHHHHHHHHhcCCc-cCcHH------HHHHHHHHHHHHH
Confidence 34566667754 46777777665543 33332 2367888877643
No 116
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=32.04 E-value=40 Score=34.76 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=43.7
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccC
Q 003014 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQI 314 (857)
Q Consensus 243 ~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~ 314 (857)
+.+|.+|-||..|++-.|.....-. .. ..+....+-.-+.+.+|+.|.+|..||+..|..
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~--~~----------~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGP--IS----------GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSC--GG----------SGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeecccc--cc----------ceeeecccccccccceeeeEecccCCcceeeee
Confidence 5899999999999999998775211 00 001112344556678889999999999999995
No 117
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=31.82 E-value=5.9e+02 Score=31.61 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=39.6
Q ss_pred cHHHHHHHhcCCchhhcCCH-HHHH--------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHH
Q 003014 544 DYQTFKKKWGSDPRFEALDR-KDRE--------LLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSK 614 (857)
Q Consensus 544 ~W~e~~~k~~~Dprfkal~~-~eRe--------~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~T~W~e 614 (857)
+|..++.+...||.|..+.. -+|- .|+-.|+.-|-++- .-...+-.|..-|+.++.--+.--|.-
T Consensus 70 R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~------~iT~tR~tfdrALraLpvtqH~rIW~l 143 (835)
T KOG2047|consen 70 RRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG------LITRTRRTFDRALRALPVTQHDRIWDL 143 (835)
T ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------hHHHHHHHHHHHHHhCchHhhccchHH
Confidence 45555556666777776543 2222 35566666554332 112234556666666532223445887
Q ss_pred HHHHhccCc
Q 003014 615 VKDILRDDP 623 (857)
Q Consensus 615 v~~~L~~Dp 623 (857)
+...++..+
T Consensus 144 yl~Fv~~~~ 152 (835)
T KOG2047|consen 144 YLKFVESHG 152 (835)
T ss_pred HHHHHHhCC
Confidence 777776654
No 118
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.23 E-value=1.1e+03 Score=31.35 Aligned_cols=149 Identities=14% Similarity=0.188 Sum_probs=72.7
Q ss_pred hHhhhcccccCchhhc-----ccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcCCCCCc
Q 003014 476 WEKELPKIVFDPRFKA-----IQSQSARRALFERYVKTRAEEERKEKRAA-------QKAAIEGFKQLLEEVSEDIDHST 543 (857)
Q Consensus 476 We~~~~~i~~DPRy~a-----l~~~~ERK~lFeeY~~~r~keEreekr~~-------~k~a~e~F~~LL~e~~~~i~~~t 543 (857)
|+.++..|...+-|.. ..+...++++++-|-..++++..-+..+. .++|.++|+. .-
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~-----------~~ 979 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKE-----------CG 979 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHH-----------hc
Confidence 4444455555566653 23556788888888887776554332221 1222222221 23
Q ss_pred cHHHHHHHhcCCchhhcCCHHHHHHHHHHHHHHhhhHHH--HHHHHHH---HHHHHHHHHHhhhcCCCCCCCChHHHHHH
Q 003014 544 DYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAE--EKAQAIR---AAAASSFKSMLREKGDITLSSRWSKVKDI 618 (857)
Q Consensus 544 ~W~e~~~k~~~Dprfkal~~~eRe~LF~Eyi~~Lkk~e~--Ek~r~~R---~~~~~~F~~LL~e~~~It~~T~W~ev~~~ 618 (857)
.|+++...... ...++.+-..+-++-+..|...++ |..+... .....+|..|++. ..|.++...
T Consensus 980 dWr~~l~~a~q----l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka-------~~~~eAlrv 1048 (1265)
T KOG1920|consen 980 DWREALSLAAQ----LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKA-------KEWEEALRV 1048 (1265)
T ss_pred cHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhH-------hHHHHHHHH
Confidence 57777653321 112233333333555555543322 1111110 0122344444432 478888765
Q ss_pred hc---cCccccccccccHHHHHHHHHHHHHH
Q 003014 619 LR---DDPRYKSVRHEDREVIFNEYVRELKA 646 (857)
Q Consensus 619 L~---~DpRy~~l~~~dr~~lFeeyi~~L~~ 646 (857)
.. .|.++.-+-....++.|.++...|+.
T Consensus 1049 a~~~~~~d~iee~l~~al~e~~~~~~~~L~~ 1079 (1265)
T KOG1920|consen 1049 ASKAKRDDIIEEVLKPALLEAFGEVLEFLED 1079 (1265)
T ss_pred HHhcccchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 43 35566655555666667776666654
No 119
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=30.82 E-value=52 Score=23.26 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEcCCCceEEEeCCCCeeeccCC
Q 003014 293 VTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 293 ~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
+.+.+|..|-+|..||+..|+.+
T Consensus 11 ~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 11 VGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EEcCCCEEEEEEcccCcEEEEcC
Confidence 44678999999999999999753
No 120
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=30.77 E-value=38 Score=43.35 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhh
Q 003014 588 IRAAAASSFKSMLRE 602 (857)
Q Consensus 588 ~R~~~~~~F~~LL~e 602 (857)
+|+..+++...||.+
T Consensus 713 Lr~~vM~dil~mlpe 727 (2365)
T COG5178 713 LRRQVMADILSMLPE 727 (2365)
T ss_pred HHHHHHHHHHHhcCc
Confidence 466777777777765
No 121
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=30.37 E-value=1.1e+02 Score=35.47 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=30.0
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
....|+.+.-++|-.||||.+|.++.|+++.+.
T Consensus 451 Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 451 VLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred eeEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 456799999999999999999999999999764
No 122
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=29.61 E-value=4.3e+02 Score=32.19 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 114 HQIYPTYPSLPPIGVSPQGPLLRPPQMGVRP 144 (857)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~~ 144 (857)
.|+++.+|..|+. .+++.+|..+|..++.+
T Consensus 406 ~q~~~~~p~~~g~-~~~~~~~~~~p~~g~p~ 435 (600)
T KOG1676|consen 406 TQFGNYGPHAPGP-FGQQQQGAPQPANGGPP 435 (600)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Confidence 6667777777753 44667777777665544
No 123
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=29.16 E-value=1.3e+03 Score=29.46 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=16.6
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 492 IQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLE 533 (857)
Q Consensus 492 l~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~LL~ 533 (857)
|.-..-++..-++-.++++. .+++-+.+.+.++.|..-+.
T Consensus 662 lD~d~i~~~q~eel~Ke~kE--lq~rL~~q~KkiDh~ERA~R 701 (988)
T KOG2072|consen 662 LDADQIKARQIEELEKERKE--LQSRLQYQEKKIDHLERAKR 701 (988)
T ss_pred cCHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHH
Confidence 33333344444444444332 22233333444555555443
No 124
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=28.42 E-value=23 Score=43.44 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=28.4
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
....|+...+++--.||.|+.|..+.|++|.
T Consensus 350 vq~pw~rais~nkvpyyinh~~q~t~wdhp~ 380 (966)
T KOG4286|consen 350 VQGPWERAISPNKVPYYINHETQTTCWDHPK 380 (966)
T ss_pred CcccchhccCccccchhhcccchhhhccchH
Confidence 5557999999999999999999999999996
No 125
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=27.90 E-value=90 Score=35.57 Aligned_cols=60 Identities=10% Similarity=0.211 Sum_probs=44.6
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 243 ~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+.+|.+|-+|..|++-.|..+.... . . .+...+..-+.+.+|++|=+|..|++..|..+.
T Consensus 263 ~~~g~l~ald~~tG~~~W~~~~~~~--~-------~-----~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVWKREYGSV--N-------D-----FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred EcCCeEEEEECCCCCEEEeecCCCc--c-------C-----cEEECCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 4589999999999999999874211 0 0 112235555677899999999999999998653
No 126
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.64 E-value=4.1e+02 Score=30.42 Aligned_cols=7 Identities=57% Similarity=1.047 Sum_probs=2.6
Q ss_pred CCCCCCC
Q 003014 136 RPPQMGV 142 (857)
Q Consensus 136 ~pp~~~~ 142 (857)
+||..||
T Consensus 432 rPppqgg 438 (488)
T KOG3895|consen 432 RPPPQGG 438 (488)
T ss_pred CCCCCCC
Confidence 3333333
No 127
>PF15449 Retinal: Retinal protein
Probab=27.51 E-value=1.1e+03 Score=31.05 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003014 91 SSAGLRPSVPTPSAPSN 107 (857)
Q Consensus 91 ~~~~~~~~~p~~~~~~~ 107 (857)
++++.|-+.|+-.+.++
T Consensus 1010 sp~~~Rk~SPtR~hwsp 1026 (1287)
T PF15449_consen 1010 SPPLVRKASPTRAHWSP 1026 (1287)
T ss_pred CCcccccCCCCcCCCCC
Confidence 34455777777766333
No 128
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.39 E-value=2.2e+02 Score=34.58 Aligned_cols=16 Identities=19% Similarity=0.119 Sum_probs=9.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 003014 145 WLPFLPYPAAYPSPFP 160 (857)
Q Consensus 145 ~pp~~~~~~~~~g~~~ 160 (857)
+||.+-.|+++||+.+
T Consensus 187 ~~psq~~p~vpp~~~g 202 (728)
T KOG4592|consen 187 QPPSQAQPKVPPGFLG 202 (728)
T ss_pred CChhhcCCCCCCcccC
Confidence 3555555556666554
No 129
>KOG4339 consensus RPEL repeat-containing protein [General function prediction only]
Probab=27.36 E-value=8.5e+02 Score=29.26 Aligned_cols=15 Identities=7% Similarity=-0.079 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCCC
Q 003014 154 AYPSPFPLPAHGMPN 168 (857)
Q Consensus 154 ~~~g~~~~p~~g~~~ 168 (857)
..-+.+...+.|...
T Consensus 227 ~e~~n~~~~k~gq~~ 241 (533)
T KOG4339|consen 227 EEDQNTTADKRGQLS 241 (533)
T ss_pred hhhcccccccccccC
Confidence 344445455555553
No 130
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=27.23 E-value=5e+02 Score=34.42 Aligned_cols=18 Identities=17% Similarity=-0.068 Sum_probs=9.7
Q ss_pred CCCCCCCCCCcccCCCCC
Q 003014 173 QIDAQPPGLSSVRTAAAT 190 (857)
Q Consensus 173 ~p~~~ppg~~~~~~~~~~ 190 (857)
++.+|+|...+|+..+..
T Consensus 953 v~~~q~~vG~sMfaplks 970 (2238)
T KOG3600|consen 953 VNAIQSPVGFSMFAPLKS 970 (2238)
T ss_pred ccccccccccccCCCccc
Confidence 355566665555555443
No 131
>KOG2133 consensus Transcriptional corepressor Atrophin-1/DRPLA [General function prediction only]
Probab=26.54 E-value=9.7e+02 Score=31.07 Aligned_cols=16 Identities=31% Similarity=0.052 Sum_probs=8.5
Q ss_pred cccccccccccCCCCC
Q 003014 38 SSATALSTTTSWMPTI 53 (857)
Q Consensus 38 ~~~~~~~~~~~~~~~~ 53 (857)
+|+++.+..+++--++
T Consensus 581 sls~~as~~~sq~~~P 596 (1229)
T KOG2133|consen 581 SLSTRASKSESQRRTP 596 (1229)
T ss_pred ccccccCCchhhcCCC
Confidence 5566655555554443
No 132
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=26.25 E-value=6.7e+02 Score=27.24 Aligned_cols=15 Identities=13% Similarity=-0.053 Sum_probs=7.2
Q ss_pred Ccccceecccccccc
Q 003014 22 PVQASVRTFSDSTVA 36 (857)
Q Consensus 22 ~~~~~~~~~~~~~~~ 36 (857)
.-||||.|-|.---+
T Consensus 107 ~g~as~Kl~F~~GG~ 121 (261)
T KOG3294|consen 107 EGEASFKLTFNEGGC 121 (261)
T ss_pred cceeEEEEEecCCCc
Confidence 335555555544333
No 133
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.17 E-value=4e+02 Score=30.12 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhhc
Q 003014 589 RAAAASSFKSMLREK 603 (857)
Q Consensus 589 R~~~~~~F~~LL~e~ 603 (857)
|..++..|..||..+
T Consensus 103 re~AM~~FV~Lldr~ 117 (469)
T KOG3878|consen 103 REQAMEGFVDLLDRM 117 (469)
T ss_pred HHHHHHHHHHHHHhc
Confidence 345788999999765
No 134
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=25.97 E-value=23 Score=44.85 Aligned_cols=6 Identities=33% Similarity=1.160 Sum_probs=0.0
Q ss_pred eEEEeC
Q 003014 300 KYYYNS 305 (857)
Q Consensus 300 ~YyyN~ 305 (857)
=|||-.
T Consensus 387 DfYYQV 392 (808)
T PF09770_consen 387 DFYYQV 392 (808)
T ss_dssp ------
T ss_pred cccccc
Confidence 366643
No 135
>PF07777 MFMR: G-box binding protein MFMR; InterPro: IPR012900 This region is found to the N terminus of IPR011616 from INTERPRO, which is a transcription factor domain. It is between 150 and 200 amino acids in length. The N-terminal half is rather rich in proline residues and has been termed the PRD (proline rich domain) [], whereas the C-terminal half is more polar and has been called the MFMR (multifunctional mosaic region). It has been suggested that this family is composed of three sub-families called A, B and C [], classified according to motif composition. It has been suggested that some of these motifs may be involved in mediating protein-protein interactions []. The MFMR region contains a nuclear localisation signal in bZIP opaque and GBF-2 []. The MFMR also contains a transregulatory activity in TAF-1. The MFMR in CPRF-2 contains cytoplasmic retention signals []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.66 E-value=2.1e+02 Score=29.91 Aligned_cols=13 Identities=15% Similarity=-0.041 Sum_probs=7.5
Q ss_pred CCCCCCCC-CCCCC
Q 003014 128 VSPQGPLL-RPPQM 140 (857)
Q Consensus 128 ~~~~~~~~-~pp~~ 140 (857)
.+.+=||+ +.|+|
T Consensus 57 ~phPYMWG~~q~mm 70 (189)
T PF07777_consen 57 QPHPYMWGPQQPMM 70 (189)
T ss_pred CCCCcccCCCcccc
Confidence 34667888 44444
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=25.31 E-value=1.4e+03 Score=28.39 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=7.9
Q ss_pred CCChHHHHHhhhcC
Q 003014 711 QASWTESRPKLEKD 724 (857)
Q Consensus 711 ~ssW~E~~~~l~kD 724 (857)
+.+..+|-..|-.|
T Consensus 569 ~~Sl~~IG~~FgRd 582 (617)
T PRK14086 569 DLSLPKIGQQFGRD 582 (617)
T ss_pred CCCHHHHHHHhCCC
Confidence 55566666665544
No 137
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=25.26 E-value=1.5e+03 Score=28.93 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 003014 497 ARRALFERYV 506 (857)
Q Consensus 497 ERK~lFeeY~ 506 (857)
.|+.+.+++.
T Consensus 568 aRk~liE~rK 577 (988)
T KOG2072|consen 568 ARKSLIEKRK 577 (988)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 138
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.91 E-value=2e+02 Score=32.63 Aligned_cols=8 Identities=13% Similarity=-0.089 Sum_probs=3.7
Q ss_pred CCCCCCCC
Q 003014 117 YPTYPSLP 124 (857)
Q Consensus 117 ~~~~~~~~ 124 (857)
+++|+..+
T Consensus 185 ~~~~~~~d 192 (365)
T KOG2391|consen 185 ALPYMTDD 192 (365)
T ss_pred cCcccCCC
Confidence 44444444
No 139
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=24.89 E-value=1.8e+02 Score=34.53 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.2
Q ss_pred HHHHHHHhh
Q 003014 527 GFKQLLEEV 535 (857)
Q Consensus 527 ~F~~LL~e~ 535 (857)
++..||..+
T Consensus 648 dLe~ll~k~ 656 (661)
T KOG2070|consen 648 DLEKLLRKM 656 (661)
T ss_pred HHHHHHHHH
Confidence 444555443
No 140
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=24.88 E-value=24 Score=44.57 Aligned_cols=8 Identities=38% Similarity=0.696 Sum_probs=2.4
Q ss_pred ChHHHHHh
Q 003014 713 SWTESRPK 720 (857)
Q Consensus 713 sW~E~~~~ 720 (857)
.|.+++..
T Consensus 711 ~W~~~~~~ 718 (808)
T PF09770_consen 711 QWTEFYDQ 718 (808)
T ss_dssp HHHHH---
T ss_pred Hhhhhhhh
Confidence 44444443
No 141
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=24.44 E-value=3.9e+02 Score=32.94 Aligned_cols=6 Identities=33% Similarity=0.645 Sum_probs=2.4
Q ss_pred HHHHHH
Q 003014 564 KDRELL 569 (857)
Q Consensus 564 ~eRe~L 569 (857)
..++.+
T Consensus 243 ~p~~l~ 248 (811)
T KOG4364|consen 243 RPEKLL 248 (811)
T ss_pred cchhHH
Confidence 344444
No 142
>PF09301 DUF1970: Domain of unknown function (DUF1970); InterPro: IPR015380 This entry is represented by Bacteriophage PRD1, P16; it is a family of uncharacterised viral proteins.; PDB: 1W8X_P.
Probab=24.16 E-value=34 Score=30.82 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=5.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 146 LPFLPYPAAYPSPFPLPAHGMPNPSVSQIDA 176 (857)
Q Consensus 146 pp~~~~~~~~~g~~~~p~~g~~~p~~~~p~~ 176 (857)
||+|.|..++.|+.-.|..|--.|+|..|+-
T Consensus 38 ppymtynqpqagsvtlpvagytspsptlpnr 68 (117)
T PF09301_consen 38 PPYMTYNQPQAGSVTLPVAGYTSPSPTLPNR 68 (117)
T ss_dssp --TT-SS---S-S---S--------------
T ss_pred CCcccccCCCCcceeeeeccccCCCCCCCCC
Confidence 4556677777888888998887777766543
No 143
>PHA03369 capsid maturational protease; Provisional
Probab=23.97 E-value=3e+02 Score=33.47 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCC
Q 003014 146 LPFLPYPAAYPS 157 (857)
Q Consensus 146 pp~~~~~~~~~g 157 (857)
+|.++|++.+.|
T Consensus 423 ~p~ts~~p~pv~ 434 (663)
T PHA03369 423 SPGTSYGPEPVG 434 (663)
T ss_pred CCccCCCCCCCC
Confidence 344444443333
No 144
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=23.80 E-value=2.9e+02 Score=31.19 Aligned_cols=11 Identities=36% Similarity=0.981 Sum_probs=5.6
Q ss_pred CCCCCCCCCCC
Q 003014 161 LPAHGMPNPSV 171 (857)
Q Consensus 161 ~p~~g~~~p~~ 171 (857)
..+.|+|+|..
T Consensus 149 ~~tagiPhpai 159 (421)
T KOG3248|consen 149 LHTAGIPHPAI 159 (421)
T ss_pred ccccCCCCccc
Confidence 34455555544
No 145
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=23.48 E-value=1.9e+02 Score=33.80 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCCC
Q 003014 134 LLRPPQMGVRPWLP 147 (857)
Q Consensus 134 ~~~pp~~~~~~~pp 147 (857)
|.--|.+.|+++||
T Consensus 493 ~~a~p~P~~~~~pP 506 (543)
T KOG3537|consen 493 WNASPNPMKIPQPP 506 (543)
T ss_pred cccCCCcCCCCCCC
Confidence 33333344556664
No 146
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=23.34 E-value=1.1e+02 Score=36.13 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCc-cccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q 003014 244 DTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPI-SMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 244 ~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~-~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
.+|++|-+|..|++..|..+......... ...|. .....-..+-.-+-+.+|+.|-+|..||+..|...
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~---~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWN---IGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccc---cCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 46899999999999999998651100000 00000 00011112333344679999999999999999864
No 147
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.09 E-value=1.3e+03 Score=27.39 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=6.9
Q ss_pred CCCCCCCCCcccccc
Q 003014 207 TEAPPSGTDKKEHVH 221 (857)
Q Consensus 207 ~~~~~~~~~~~~~~~ 221 (857)
.+++++++-.-+.|.
T Consensus 393 ~~~~p~~~~~v~a~~ 407 (460)
T KOG3771|consen 393 ADLPPGFLYKVKALH 407 (460)
T ss_pred ccCCCCCccceeccc
Confidence 345555555433333
No 148
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=22.54 E-value=4.4e+02 Score=29.23 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCC
Q 003014 116 IYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAI 195 (857)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~pp~~~~~~~pp~~~~~~~~~g~~~~p~~g~~~p~~~~p~~~ppg~~~~~~~~~~~~~~~ 195 (857)
.+..+..+-+..++..+|++.+-.++-|+ ||++ .-|+|+-.+|.+|...|+-.+|+.||.=..+|--.-.+.+ .+
T Consensus 94 ~~aApsp~~~~~pp~dgMpgG~~~PGFFq--pfm~--pRy~ggp~Pp~~g~~~Ppg~~pG~qPllPnsmdPtrqqgh-pn 168 (354)
T KOG4594|consen 94 AAAAPSPVLGNIPPGDGMPGGPVPPGFFQ--PFMS--PRYPGGPRPPRMGGMQPPGGVPGSQPLLPNSMDPTRQQGH-PN 168 (354)
T ss_pred cccCCCcccCCCCCCCCCCCCCCCCcccc--cccc--ccCCCCCCCcccCCCCCCCCCCCCCccCCCCCCcccccCC-CC
Q ss_pred CCCcccCCCCC
Q 003014 196 PGHQLVGTSGN 206 (857)
Q Consensus 196 ~g~q~~~~~~~ 206 (857)
=|+-+..-.||
T Consensus 169 mgqRMnPPrGm 179 (354)
T KOG4594|consen 169 MGQRMNPPRGM 179 (354)
T ss_pred cCCcCCCCCCC
No 149
>PF15449 Retinal: Retinal protein
Probab=22.52 E-value=1.4e+03 Score=30.19 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=7.8
Q ss_pred cccccCCCCcccce
Q 003014 14 SSTSTNSQPVQASV 27 (857)
Q Consensus 14 ~~~~~~~~~~~~~~ 27 (857)
+...+|+-|.+|-+
T Consensus 980 sgq~rt~e~s~arp 993 (1287)
T PF15449_consen 980 SGQNRTSEPSLARP 993 (1287)
T ss_pred CCccCccCccccCC
Confidence 33356666666644
No 150
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=22.06 E-value=6.4e+02 Score=29.17 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.9
Q ss_pred CCCCCC
Q 003014 135 LRPPQM 140 (857)
Q Consensus 135 ~~pp~~ 140 (857)
.||..|
T Consensus 422 ~Yp~~~ 427 (508)
T KOG1365|consen 422 IYPIHM 427 (508)
T ss_pred eecccc
Confidence 355544
No 151
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=21.99 E-value=7.3e+02 Score=29.59 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=15.2
Q ss_pred cccccccCCCCcccceeccccc
Q 003014 12 LGSSTSTNSQPVQASVRTFSDS 33 (857)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~ 33 (857)
+|.-|-+|.+|+|.-+-+--.|
T Consensus 282 ~gP~t~~~gkpvq~~~tF~~Ds 303 (502)
T PF05616_consen 282 MGPVTDRNGKPVQTVITFGRDS 303 (502)
T ss_pred cCCccCCCCCEEEEEEEEeccC
Confidence 4556678999999876554443
No 152
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=21.96 E-value=3.4e+02 Score=31.66 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=11.9
Q ss_pred cccccccCCCCCCCCCCC
Q 003014 42 ALSTTTSWMPTIPSFSTP 59 (857)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~ 59 (857)
-|.++-+++|+.|++|+|
T Consensus 52 ~lkP~~s~ap~~p~sppP 69 (523)
T KOG3837|consen 52 GLKPGDSDAPVRPDSPPP 69 (523)
T ss_pred CCCccccCCCCCCCCCCC
Confidence 355566777777776665
No 153
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=51 Score=37.69 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 235 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 235 ~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
.++|..+.+++|+.||||++-+.++|-.|.+.
T Consensus 115 l~~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 115 LAGWHMRFTDTGQRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred ccceeeEecCCCceehhhhhhcCccccCchhh
Confidence 33999999999999999999999999988765
No 154
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.45 E-value=1.6e+03 Score=27.93 Aligned_cols=81 Identities=16% Similarity=0.179 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhcc-CccccccccccHHHHHHHHHH
Q 003014 564 KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRD-DPRYKSVRHEDREVIFNEYVR 642 (857)
Q Consensus 564 ~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~T~W~ev~~~L~~-DpRy~~l~~~dr~~lFeeyi~ 642 (857)
.++..-|+.+|..|+++...+.++ -...+.....|...+ .+.....-.++...|.+ +.++...-..++++-+..-+.
T Consensus 159 l~kLeelr~~L~~L~~ek~~Rlek-v~~~~~~I~~l~~~L-g~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~ 236 (660)
T KOG4302|consen 159 LEKLEELREHLNELQKEKSDRLEK-VLELKEEIKSLCSVL-GLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVK 236 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-CCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHH
Confidence 466678899998887654433322 123344444454444 46666666777766644 444554334455555556666
Q ss_pred HHHH
Q 003014 643 ELKA 646 (857)
Q Consensus 643 ~L~~ 646 (857)
.|+.
T Consensus 237 ~l~~ 240 (660)
T KOG4302|consen 237 KLKE 240 (660)
T ss_pred HHHH
Confidence 6644
No 155
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=20.99 E-value=3.9e+02 Score=31.41 Aligned_cols=12 Identities=33% Similarity=0.573 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCC
Q 003014 117 YPTYPSLPPIGV 128 (857)
Q Consensus 117 ~~~~~~~~~~~~ 128 (857)
-+.||.+|++|+
T Consensus 438 ~~sy~v~p~sg~ 449 (543)
T KOG3537|consen 438 TQSYSVLPKSGP 449 (543)
T ss_pred ccccccccCCCC
Confidence 344556665544
No 156
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=20.23 E-value=1e+03 Score=29.68 Aligned_cols=135 Identities=15% Similarity=0.238 Sum_probs=74.7
Q ss_pred chHhhhcccccCchhhcccCHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccHH
Q 003014 475 KWEKELPKIVFDPRFKAIQSQSARRAL--------FERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQ 546 (857)
Q Consensus 475 tWe~~~~~i~~DPRy~al~~~~ERK~l--------FeeY~~~r~keEreekr~~~k~a~e~F~~LL~e~~~~i~~~t~W~ 546 (857)
+|+++..++..||.|..+.+--||--+ |-.||.-+.+.-. ....+-.|-.-|... +-.-|.--|.
T Consensus 70 R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~------iT~tR~tfdrALraL-pvtqH~rIW~ 142 (835)
T KOG2047|consen 70 RRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGL------ITRTRRTFDRALRAL-PVTQHDRIWD 142 (835)
T ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcch------HHHHHHHHHHHHHhC-chHhhccchH
Confidence 677888899999999999877777665 5567776654332 223334555555533 2122334465
Q ss_pred HHHHHhcCC--c--------hhhcCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCCCC
Q 003014 547 TFKKKWGSD--P--------RFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKG-----DITLSSR 611 (857)
Q Consensus 547 e~~~k~~~D--p--------rfkal~~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~-----~It~~T~ 611 (857)
-+.+-++.. | ||-.+....| +|||.-|.+...- .++...+..+|.... .-+..--
T Consensus 143 lyl~Fv~~~~lPets~rvyrRYLk~~P~~~----eeyie~L~~~d~~------~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 143 LYLKFVESHGLPETSIRVYRRYLKVAPEAR----EEYIEYLAKSDRL------DEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCHHHH----HHHHHHHHhccch------HHHHHHHHHhcCchhhhhhcccchhhH
Confidence 555443332 2 3444554443 3455555443211 123334555554321 1234456
Q ss_pred hHHHHHHhccCcccc
Q 003014 612 WSKVKDILRDDPRYK 626 (857)
Q Consensus 612 W~ev~~~L~~DpRy~ 626 (857)
|.++.++|..+|.-.
T Consensus 213 w~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 213 WLELCDLISQNPDKV 227 (835)
T ss_pred HHHHHHHHHhCcchh
Confidence 999999998888543
No 157
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=20.10 E-value=1.8e+02 Score=34.54 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCC
Q 003014 136 RPPQMGVRPWLPFLP 150 (857)
Q Consensus 136 ~pp~~~~~~~pp~~~ 150 (857)
.||.++..|.|||++
T Consensus 232 ~P~~P~~~P~~~~L~ 246 (817)
T KOG1925|consen 232 IPASPKELPTRDFLL 246 (817)
T ss_pred CCCChhccCCchhhh
Confidence 344444455555543
No 158
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=20.09 E-value=5.3e+02 Score=26.25 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003014 635 VIFNEYVRELKAAEEEAEREA 655 (857)
Q Consensus 635 ~lFeeyi~~L~~~e~e~~r~~ 655 (857)
+=|-.+...|..++.....+.
T Consensus 105 d~Fa~LseAL~~Ad~~aReev 125 (158)
T PF02731_consen 105 DKFAKLSEALYIADRKAREEV 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 335555556655544333333
No 159
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=20.02 E-value=1.6e+02 Score=30.24 Aligned_cols=62 Identities=26% Similarity=0.316 Sum_probs=41.8
Q ss_pred EEEEcC-CCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeecc
Q 003014 239 TAHKTD-TGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQ 313 (857)
Q Consensus 239 ~e~~~~-~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We 313 (857)
.-+... +|+++=+|..|++..|.++. .+... ......+-.-+.+.+|++|-+|..||+..|.
T Consensus 175 ~v~~~~~~g~~~~~d~~tg~~~w~~~~--~~~~~-----------~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 175 RVYVSSGDGRVVAVDLATGEKLWSKPI--SGIYS-----------LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEEEECCTSSEEEEETTTTEEEEEECS--S-ECE-----------CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCCEEEEecC--CCccC-----------CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 555544 77777779999998897772 21100 0122234444555789999999999999995
Done!