Query 003014
Match_columns 857
No_of_seqs 330 out of 1171
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hfh_A Transcription elongatio 100.0 6.9E-40 2.4E-44 334.1 13.8 188 451-642 1-190 (190)
2 3hfh_A Transcription elongatio 99.9 7E-26 2.4E-30 230.8 13.8 184 523-748 6-190 (190)
3 2l5f_A PRE-mRNA-processing fac 99.8 5.5E-20 1.9E-24 165.8 4.2 80 232-322 10-89 (92)
4 2jxw_A WW domain-binding prote 99.8 4.4E-19 1.5E-23 153.9 7.8 71 236-317 5-75 (75)
5 2dod_A Transcription elongatio 99.7 8E-19 2.7E-23 153.9 5.8 71 447-518 9-79 (82)
6 1uzc_A Hypothetical protein FL 99.7 8.4E-18 2.9E-22 143.6 6.3 63 448-510 8-70 (71)
7 2kxq_A E3 ubiquitin-protein li 99.7 1.2E-16 4.2E-21 143.3 9.1 82 230-317 6-87 (90)
8 1tk7_A CG4244-PB; WW domain, n 99.6 3E-16 1E-20 140.2 9.1 79 230-316 9-87 (88)
9 1o6w_A PRP40, PRE-mRNA process 99.6 2.2E-17 7.5E-22 143.2 1.1 71 236-317 2-72 (75)
10 2b7e_A PRE-mRNA processing pro 99.6 1.4E-16 4.8E-21 129.8 4.0 56 454-509 2-59 (59)
11 2dof_A Transcription elongatio 99.6 1.2E-16 4.2E-21 138.3 1.1 76 684-760 8-83 (85)
12 2juc_A PRE-mRNA-splicing facto 99.4 5.8E-14 2E-18 114.3 3.3 53 455-507 6-58 (59)
13 2doe_A Transcription elongatio 99.4 4.7E-13 1.6E-17 118.1 6.4 68 446-513 8-75 (83)
14 2dk7_A Transcription elongatio 99.1 1.3E-11 4.6E-16 104.2 3.4 44 277-320 9-52 (73)
15 2ysi_A Transcription elongatio 99.0 1.6E-10 5.5E-15 87.8 5.0 36 231-266 5-40 (40)
16 1e0l_A Formin binding protein; 99.0 1.6E-10 5.5E-15 86.3 4.5 34 234-267 4-37 (37)
17 1ywi_A Formin-binding protein 98.9 3.5E-10 1.2E-14 86.4 2.7 36 230-265 6-41 (41)
18 2doe_A Transcription elongatio 98.9 2.8E-10 9.5E-15 100.3 0.9 57 589-646 16-73 (83)
19 2cqn_A Formin-binding protein 98.8 3.2E-09 1.1E-13 92.1 6.5 59 454-512 8-68 (77)
20 2dk7_A Transcription elongatio 98.8 3.8E-10 1.3E-14 95.3 0.3 34 237-270 21-54 (73)
21 1e0l_A Formin binding protein; 98.8 1.8E-09 6.2E-14 80.6 3.7 33 286-318 4-36 (37)
22 2ysh_A GAS-7, growth-arrest-sp 98.8 3.4E-09 1.2E-13 80.5 5.2 35 231-265 5-39 (40)
23 1e0m_A Wwprototype; SH3 protot 98.8 3.8E-09 1.3E-13 78.8 4.1 33 233-265 3-35 (37)
24 2dk1_A WW domain-binding prote 98.8 4.6E-09 1.6E-13 83.4 4.4 37 236-272 7-43 (50)
25 2cqn_A Formin-binding protein 98.8 1.1E-08 3.9E-13 88.6 6.9 61 521-581 8-69 (77)
26 1wr3_A Ubiquitin-protein ligas 98.7 6.5E-09 2.2E-13 77.1 4.4 33 232-264 3-35 (36)
27 1ymz_A CC45; artificial protei 98.7 8.9E-09 3E-13 79.4 4.3 34 233-266 8-41 (43)
28 2dmv_A Itchy homolog E3 ubiqui 98.7 1.1E-08 3.8E-13 78.9 4.8 35 231-265 5-39 (43)
29 2kyk_A E3 ubiquitin-protein li 98.7 1.2E-08 4.2E-13 77.0 4.9 33 232-264 5-37 (39)
30 2ysi_A Transcription elongatio 98.7 9.4E-09 3.2E-13 78.0 3.9 31 288-318 10-40 (40)
31 1wr4_A Ubiquitin-protein ligas 98.7 1.2E-08 4E-13 75.6 4.1 33 232-264 3-35 (36)
32 2law_A Yorkie homolog; YAP, SM 98.7 7.9E-09 2.7E-13 77.6 3.0 34 231-264 4-37 (38)
33 2ysg_A Syntaxin-binding protei 98.7 1.7E-08 5.9E-13 76.6 4.8 34 231-264 5-38 (40)
34 1wr7_A NEDD4-2; all-beta, liga 98.7 1.2E-08 4.1E-13 77.9 3.8 34 231-264 6-39 (41)
35 2dof_A Transcription elongatio 98.6 2.9E-08 9.9E-13 86.2 5.9 67 749-827 14-83 (85)
36 1ymz_A CC45; artificial protei 98.6 1.8E-08 6.1E-13 77.7 3.9 31 288-318 11-41 (43)
37 2zaj_A Membrane-associated gua 98.6 2.4E-08 8.1E-13 79.1 4.5 37 229-265 9-45 (49)
38 2ysf_A E3 ubiquitin-protein li 98.6 2.9E-08 1E-12 75.3 4.7 34 231-264 5-38 (40)
39 1uzc_A Hypothetical protein FL 98.6 5.5E-08 1.9E-12 83.0 6.5 54 522-577 15-69 (71)
40 2ez5_W Dnedd4, E3 ubiquitin-pr 98.6 3.9E-08 1.3E-12 76.9 4.8 36 230-265 7-42 (46)
41 2jv4_A Peptidyl-prolyl CIS/tra 98.6 2.9E-08 9.9E-13 80.2 4.0 35 232-266 6-41 (54)
42 1ywi_A Formin-binding protein 98.6 3.5E-08 1.2E-12 75.3 3.7 31 287-317 11-41 (41)
43 2kpz_A E3 ubiquitin-protein li 98.5 4.4E-08 1.5E-12 77.7 3.9 35 231-265 10-44 (49)
44 2l4j_A YES-associated protein 98.5 7.2E-08 2.5E-12 75.4 4.8 34 231-264 9-42 (46)
45 2djy_A SMAD ubiquitination reg 98.5 5.9E-08 2E-12 74.4 4.1 34 232-265 6-39 (42)
46 2dk1_A WW domain-binding prote 98.5 2E-08 6.7E-13 79.8 1.4 35 287-321 6-40 (50)
47 2dod_A Transcription elongatio 98.5 8E-08 2.8E-12 84.2 5.3 60 522-583 17-76 (82)
48 2ysb_A Salvador homolog 1 prot 98.5 8.3E-08 2.8E-12 76.1 4.8 34 232-265 10-43 (49)
49 2yse_A Membrane-associated gua 98.5 6.3E-08 2.1E-12 79.8 4.1 35 230-264 10-44 (60)
50 1e0n_A Hypothetical protein; Y 98.5 5E-08 1.7E-12 67.6 2.9 27 236-263 1-27 (27)
51 1e0m_A Wwprototype; SH3 protot 98.5 9.4E-08 3.2E-12 71.2 4.4 33 284-317 3-35 (37)
52 1i5h_W Rnedd4, ubiquitin ligas 98.5 9.1E-08 3.1E-12 76.2 4.4 36 231-266 9-44 (50)
53 2dwv_A Salvador homolog 1 prot 98.5 1.7E-07 5.7E-12 74.3 5.2 45 256-317 1-45 (49)
54 2ho2_A Fe65 protein, amyloid b 98.4 1.4E-07 4.8E-12 70.7 4.0 32 233-265 3-34 (38)
55 1wr7_A NEDD4-2; all-beta, liga 98.4 1.7E-07 5.8E-12 71.5 4.6 33 283-316 7-39 (41)
56 2ysh_A GAS-7, growth-arrest-sp 98.4 2.1E-07 7.1E-12 70.6 4.5 32 284-316 7-38 (40)
57 2jx8_A Hpcif1, phosphorylated 98.4 5.6E-08 1.9E-12 78.0 1.0 35 232-266 9-44 (52)
58 1wr3_A Ubiquitin-protein ligas 98.4 2E-07 6.9E-12 69.0 3.9 32 284-316 4-35 (36)
59 2ysc_A Amyloid beta A4 precurs 98.4 1.8E-07 6.2E-12 70.5 3.7 32 232-264 7-38 (39)
60 1e0n_A Hypothetical protein; Y 98.4 2.3E-07 7.7E-12 64.3 3.6 26 289-315 2-27 (27)
61 2jmf_A E3 ubiquitin-protein li 98.3 3.4E-07 1.2E-11 73.7 4.4 34 232-265 17-50 (53)
62 2law_A Yorkie homolog; YAP, SM 98.3 3.1E-07 1.1E-11 68.9 3.8 32 284-316 6-37 (38)
63 2ysd_A Membrane-associated gua 98.3 4.5E-07 1.5E-11 74.1 4.9 37 230-266 11-47 (57)
64 2djy_A SMAD ubiquitination reg 98.3 4.5E-07 1.5E-11 69.5 4.6 33 284-317 7-39 (42)
65 2kyk_A E3 ubiquitin-protein li 98.3 4.3E-07 1.5E-11 68.5 4.3 32 284-316 6-37 (39)
66 2juc_A PRE-mRNA-splicing facto 98.3 3.4E-07 1.2E-11 74.7 3.8 50 592-642 8-58 (59)
67 1wr4_A Ubiquitin-protein ligas 98.3 4.6E-07 1.6E-11 67.0 4.3 32 284-316 4-35 (36)
68 2jxw_A WW domain-binding prote 98.3 2.9E-07 1E-11 79.5 3.4 33 233-265 43-75 (75)
69 2dwv_A Salvador homolog 1 prot 98.3 3.3E-07 1.1E-11 72.6 3.2 34 232-265 12-45 (49)
70 2e45_A Fe65 protein, amyloid b 98.3 4.3E-07 1.5E-11 72.5 3.6 34 231-265 17-50 (55)
71 2dmv_A Itchy homolog E3 ubiqui 98.3 6.2E-07 2.1E-11 69.1 4.4 33 284-317 7-39 (43)
72 2ysg_A Syntaxin-binding protei 98.3 7.3E-07 2.5E-11 67.6 4.3 32 284-316 7-38 (40)
73 2ysf_A E3 ubiquitin-protein li 98.2 8.8E-07 3E-11 67.2 4.6 32 284-316 7-38 (40)
74 2jv4_A Peptidyl-prolyl CIS/tra 98.2 7.2E-07 2.4E-11 72.1 4.3 34 284-318 7-41 (54)
75 2kpz_A E3 ubiquitin-protein li 98.2 7.9E-07 2.7E-11 70.4 4.2 33 284-317 12-44 (49)
76 2b7e_A PRE-mRNA processing pro 98.2 1.1E-06 3.6E-11 71.8 4.9 52 522-575 3-57 (59)
77 1wmv_A WWOX, WW domain contain 98.2 1E-06 3.5E-11 71.2 4.3 35 232-266 10-44 (54)
78 2ez5_W Dnedd4, E3 ubiquitin-pr 98.2 1.2E-06 4.2E-11 68.4 4.5 33 284-317 10-42 (46)
79 3l4h_A E3 ubiquitin-protein li 98.2 1.8E-07 6.3E-12 85.6 -1.0 59 234-317 46-104 (109)
80 2l4j_A YES-associated protein 98.1 1.7E-06 6E-11 67.5 4.5 32 284-316 11-42 (46)
81 1i5h_W Rnedd4, ubiquitin ligas 98.1 1.9E-06 6.5E-11 68.5 4.7 33 284-317 11-43 (50)
82 2ysb_A Salvador homolog 1 prot 98.1 1.7E-06 5.9E-11 68.5 4.2 33 284-317 11-43 (49)
83 2zaj_A Membrane-associated gua 98.1 1.9E-06 6.7E-11 68.1 4.1 33 284-317 13-45 (49)
84 2jx8_A Hpcif1, phosphorylated 98.1 1.4E-06 4.7E-11 69.9 3.0 30 288-317 13-43 (52)
85 2l5f_A PRE-mRNA-processing fac 98.1 2.8E-06 9.5E-11 76.2 4.6 33 288-320 14-46 (92)
86 1o6w_A PRP40, PRE-mRNA process 98.0 1.2E-06 4.2E-11 75.4 2.1 32 234-265 41-72 (75)
87 2ho2_A Fe65 protein, amyloid b 98.0 3.6E-06 1.2E-10 63.0 4.3 31 285-317 4-34 (38)
88 1jmq_A YAP65, 65 kDa YES-assoc 98.0 2E-06 6.8E-11 67.2 2.5 34 232-265 7-40 (46)
89 2ysc_A Amyloid beta A4 precurs 98.0 4.4E-06 1.5E-10 62.9 4.1 31 284-316 8-38 (39)
90 2jmf_A E3 ubiquitin-protein li 98.0 4.1E-06 1.4E-10 67.4 4.0 33 284-317 18-50 (53)
91 2yse_A Membrane-associated gua 97.9 4.5E-06 1.5E-10 68.7 3.6 33 284-317 13-45 (60)
92 2ysd_A Membrane-associated gua 97.9 5.8E-06 2E-10 67.5 4.2 33 284-317 14-46 (57)
93 1tk7_A CG4244-PB; WW domain, n 97.9 4.2E-06 1.4E-10 74.4 3.6 33 232-264 55-87 (88)
94 2kxq_A E3 ubiquitin-protein li 97.9 5.3E-06 1.8E-10 74.1 3.7 34 232-265 54-87 (90)
95 1wmv_A WWOX, WW domain contain 97.9 1.1E-05 3.7E-10 65.2 4.2 33 284-317 11-43 (54)
96 1jmq_A YAP65, 65 kDa YES-assoc 97.8 8.1E-06 2.8E-10 63.7 2.8 33 284-317 8-40 (46)
97 2e45_A Fe65 protein, amyloid b 97.6 3.6E-05 1.2E-09 61.5 3.7 31 284-316 19-49 (55)
98 3tc5_A Peptidyl-prolyl CIS-tra 97.5 4.1E-05 1.4E-09 76.0 3.9 34 232-265 8-42 (166)
99 3l4h_A E3 ubiquitin-protein li 97.4 8.2E-05 2.8E-09 68.2 3.8 35 231-265 70-104 (109)
100 3tc5_A Peptidyl-prolyl CIS-tra 97.0 0.00041 1.4E-08 68.7 4.1 33 284-317 9-42 (166)
101 1eg3_A Dystrophin; EF-hand lik 96.5 0.001 3.5E-08 70.4 3.0 33 232-264 10-42 (261)
102 2kfd_A PRE-mRNA-processing pro 96.5 0.0034 1.1E-07 51.9 5.2 60 747-814 6-67 (69)
103 2kfd_A PRE-mRNA-processing pro 96.1 0.0079 2.7E-07 49.7 5.3 53 454-506 10-67 (69)
104 1eg3_A Dystrophin; EF-hand lik 95.8 0.0045 1.6E-07 65.5 3.7 35 284-319 11-45 (261)
105 2k85_A Glucocorticoid receptor 95.7 0.024 8.1E-07 47.4 6.8 58 520-579 7-68 (69)
106 3olm_A E3 ubiquitin-protein li 95.7 0.0032 1.1E-07 71.3 2.2 34 232-265 7-40 (429)
107 1yw5_A Peptidyl prolyl CIS/tra 94.9 0.021 7.1E-07 56.9 4.7 34 232-265 6-40 (177)
108 2k85_A Glucocorticoid receptor 94.5 0.058 2E-06 45.0 5.5 57 695-752 11-68 (69)
109 3olm_A E3 ubiquitin-protein li 94.0 0.017 5.7E-07 65.5 1.9 33 284-317 8-40 (429)
110 1yw5_A Peptidyl prolyl CIS/tra 90.9 0.14 5E-06 50.7 3.8 35 284-319 7-42 (177)
111 3le4_A Microprocessor complex 81.6 1.5 5.2E-05 37.0 4.3 35 284-319 28-62 (79)
112 3le4_A Microprocessor complex 77.9 2.8 9.6E-05 35.4 4.8 39 230-268 25-63 (79)
113 4gyx_A Type III collagen fragm 74.9 2.9 9.7E-05 28.4 3.2 14 60-73 12-25 (31)
114 2v8f_C MDIA1, profilin IIA; al 54.8 8.9 0.0003 25.5 2.5 9 59-67 4-12 (26)
115 2v8f_C MDIA1, profilin IIA; al 46.4 12 0.00039 25.0 2.1 20 54-73 2-21 (26)
116 3q7m_A Lipoprotein YFGL, BAMB; 35.1 35 0.0012 36.0 5.1 61 244-315 285-345 (376)
117 1w8x_P Protein P16, protein S, 34.4 21 0.00073 30.8 2.5 31 146-176 38-68 (117)
118 1f5n_A Interferon-induced guan 33.9 6.2E+02 0.021 29.4 17.3 28 738-765 519-546 (592)
119 3q7m_A Lipoprotein YFGL, BAMB; 32.9 28 0.00096 36.8 3.9 62 243-316 110-171 (376)
120 3ecq_A Protein SPR0328, endo-a 28.6 16 0.00055 46.1 1.1 25 296-320 943-967 (1531)
121 1v9d_A Diaphanous protein homo 26.8 4.5E+02 0.015 28.1 12.2 38 611-650 274-311 (340)
122 1zxh_A Immunoglobulin G bindin 25.9 19 0.00067 28.6 0.8 31 453-483 22-52 (56)
123 3qf7_D MRE11; ABC-ATPase, ATPa 25.4 50 0.0017 24.9 2.8 34 734-767 4-40 (50)
124 3obv_E Protein diaphanous homo 23.4 8.1E+02 0.028 27.3 14.0 38 611-650 345-382 (457)
125 2zxq_A Endo-alpha-N-acetylgala 21.7 25 0.00085 44.7 0.9 25 296-320 705-729 (1376)
No 1
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=100.00 E-value=6.9e-40 Score=334.09 Aligned_cols=188 Identities=37% Similarity=0.638 Sum_probs=159.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 451 GPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQ 530 (857)
Q Consensus 451 ~~tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr~~~k~a~e~F~~ 530 (857)
|+|+|||+.+|++||++++|+++|+|+++|++|++||||.+| +.++||++|++||.+++++++++++.+.+.++++|++
T Consensus 1 ~~s~ee~~~~F~~lL~~~~V~~~~~We~~~~~i~~Dpry~al-~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~ 79 (190)
T 3hfh_A 1 GPLGSARMXQFXDMLLERGVSAFSTWEXELHXIVFDPRYLLL-NPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXX 79 (190)
T ss_dssp -CCSCHHHHHHHHHHHHTTCCSSSCHHHHGGGTTTSGGGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCchhhhhhhhccCcchhcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999 7999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCCccHHHHHHHhcCCchhhcCCH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 003014 531 LLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLS 609 (857)
Q Consensus 531 LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~-~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e~~~It~~ 609 (857)
||++. +|+++++|.+|..+|.+||||++|.. .||+.||++||..|+++++++++..+++++.+|.+||.++ .|++.
T Consensus 80 lL~e~--~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~~~r~~~~~~f~~lL~~~-~l~~~ 156 (190)
T 3hfh_A 80 MMEEA--XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSXTRGEXIXSDFFELLSNH-HLDSQ 156 (190)
T ss_dssp -----------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHHHTHHHHHHHHHHHHHTS-CCCTT
T ss_pred HHHHc--CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhC-CCCCC
Confidence 99986 59999999999999999999999987 9999999999999999998888888899999999999998 89999
Q ss_pred CChHHHHHHhccCccccccccc-cHHHHHHHHHH
Q 003014 610 SRWSKVKDILRDDPRYKSVRHE-DREVIFNEYVR 642 (857)
Q Consensus 610 T~W~ev~~~L~~DpRy~~l~~~-dr~~lFeeyi~ 642 (857)
|+|.+|+..|.+||||++|... +|+.||++||+
T Consensus 157 t~W~~~~~~l~~D~ry~~v~~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 157 SRWSXVXDXVESDPRYXAVDSSSMREDLFXQYIE 190 (190)
T ss_dssp CCHHHHHHHHSSSHHHHTSCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhhChHhhcCCCHHHHHHHHHHHhC
Confidence 9999999999999999999985 99999999983
No 2
>3hfh_A Transcription elongation regulator 1; helix bundle, activator, alternative splicing, coiled coil, nucleus, phosphoprotein, repressor; HET: MLY; 2.70A {Homo sapiens} PDB: 2kis_A 2e71_A 2kiq_A
Probab=99.93 E-value=7e-26 Score=230.77 Aligned_cols=184 Identities=24% Similarity=0.380 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhcCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003014 523 AAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLRE 602 (857)
Q Consensus 523 ~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~~eRe~LF~Eyi~~Lkk~e~Ek~r~~R~~~~~~F~~LL~e 602 (857)
.++.+|+.||.+. +|+++++|..+..+|.+||||.+|+..+|+++|++|+....+++.++++...+.++++|+.||.+
T Consensus 6 e~~~~F~~lL~~~--~V~~~~~We~~~~~i~~Dpry~al~~~eRk~~f~~y~~~r~~ee~~ek~~~~~~ar~~F~~lL~e 83 (190)
T 3hfh_A 6 ARMXQFXDMLLER--GVSAFSTWEXELHXIVFDPRYLLLNPXERXQVFDQYVXTRAEEERREXXNXIMQAXEDFXXMMEE 83 (190)
T ss_dssp HHHHHHHHHHHHT--TCCSSSCHHHHGGGTTTSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHc--CcCCCCchhhhhhhhccCcchhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677999999986 69999999999999999999999988999999999999987777666666667899999999999
Q ss_pred cCCCCCCCChHHHHHHhccCcccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 603 KGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQ 681 (857)
Q Consensus 603 ~~~It~~T~W~ev~~~L~~DpRy~~l~~-~dr~~lFeeyi~~L~~~e~e~~r~~k~kre~~~~l~eRere~rk~k~ree~ 681 (857)
. .|++.++|.++...|.+||||.+|.. .+|+.||++||..|.+.+.+..+
T Consensus 84 ~-~i~~~~~w~~~~~~~~~Dpr~~~~~~~~eR~~lF~eyi~~lkk~e~e~~~---------------------------- 134 (190)
T 3hfh_A 84 A-XFNPRATFSEFAAXHAXDSRFXAIEXMXDREALFNEFVAAARXXEXEDSX---------------------------- 134 (190)
T ss_dssp ------------------TCCTTTTSCTTTTTTTTHHHHHHHHSTTTTTHHH----------------------------
T ss_pred c-CCCCCCCHHHHHHHhCCCchhhcCccchHHHHHHHHHHHHHHHHHHHHHH----------------------------
Confidence 7 79999999999999999999999987 89999999999999654321100
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHH
Q 003014 682 EMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 748 (857)
Q Consensus 682 e~er~R~~~rr~ea~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~ 748 (857)
.++..++..|.+||.+.-+++.++|.+++..|.+|++|.++. +..+|+.||++||+
T Consensus 135 --------~~r~~~~~~f~~lL~~~~l~~~t~W~~~~~~l~~D~ry~~v~---~~~~R~~~F~eyi~ 190 (190)
T 3hfh_A 135 --------TRGEXIXSDFFELLSNHHLDSQSRWSXVXDXVESDPRYXAVD---SSSMREDLFXQYIE 190 (190)
T ss_dssp --------HTHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHSSSHHHHTSC---CHHHHHHHHHHHHC
T ss_pred --------HHHHhHHHHHHHHHHhCCCCCCCCHHHHHHHHhhChHhhcCC---CHHHHHHHHHHHhC
Confidence 112236678999999986789999999999999999998743 23499999999984
No 3
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=99.78 E-value=5.5e-20 Score=165.79 Aligned_cols=80 Identities=38% Similarity=0.723 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeee
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSS 311 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~ 311 (857)
..++.+|+++++++|++||||+.|++|+|++|.++....+. .. ..++|+++++.+||+||||+.|++|+
T Consensus 10 ~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~~~e~----------~~-~~~~W~~~~~~~Gr~Yy~N~~T~~s~ 78 (92)
T 2l5f_A 10 SGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQ----------LL-SKCPWKEYKSDSGKTYYYNSQTKESR 78 (92)
T ss_dssp TBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGGTCHHHH----------HH-HSCSEEEEECTTCCEEEEETTTTEEE
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCceecccCccccccccc----------cc-cccceEEEECCCCCEEEEECCCCCee
Confidence 34788999999999999999999999999999987532111 12 24789999999999999999999999
Q ss_pred ccCChhhHHhh
Q 003014 312 WQIPSEVTELK 322 (857)
Q Consensus 312 We~P~e~~~~~ 322 (857)
|++|++|.+++
T Consensus 79 We~P~~~~~~~ 89 (92)
T 2l5f_A 79 WAKPKELEDLE 89 (92)
T ss_dssp SCCCHHHHTSS
T ss_pred ccCchhHhhhh
Confidence 99999998764
No 4
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=99.77 E-value=4.4e-19 Score=153.93 Aligned_cols=71 Identities=37% Similarity=0.781 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q 003014 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 236 ~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
.+|+++++++|++||||+.|++|+|++|.+++...+. .....+|+++.+.+||+||||..|++|+|++|
T Consensus 5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~~~~~~e~-----------~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P 73 (75)
T 2jxw_A 5 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK-----------TAVKTVWVEGLSEDGFTYYYNTETGESRWEKP 73 (75)
T ss_dssp CCEEEEEETTTEEEEEETTTTEEECSCCSSCSSCCSS-----------SSCCCSEEEEEETTTEEEEEETTTTEEESSCC
T ss_pred CCcEEEECCCCCEEEEECCCCCEeecCCCcccccccc-----------cCCCccEEEEECCCCCEEEEECcCCCEeccCc
Confidence 5899999999999999999999999999988754321 12347899999999999999999999999999
Q ss_pred hh
Q 003014 316 SE 317 (857)
Q Consensus 316 ~e 317 (857)
++
T Consensus 74 ~e 75 (75)
T 2jxw_A 74 DD 75 (75)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 5
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.75 E-value=8e-19 Score=153.90 Aligned_cols=71 Identities=49% Similarity=0.802 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 447 DGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKR 518 (857)
Q Consensus 447 ee~~~~tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keEreekr 518 (857)
.+..+.++||++++|++||++++|+++|+|+++|++|++||||.+|+ +.+||++|++||.+++++|++++|
T Consensus 9 ~e~~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~aL~-~~eRK~~F~~y~~~r~~eereekr 79 (82)
T 2dod_A 9 RERAIVPLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLN-PKERKQVFDQYVKTRAEEERRSGP 79 (82)
T ss_dssp SSSSSCCHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGGTSC-HHHHHHHHHHHHHHHHHGGGSSCS
T ss_pred HhcccCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccccCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999997 999999999999999999887765
No 6
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=99.70 E-value=8.4e-18 Score=143.57 Aligned_cols=63 Identities=35% Similarity=0.538 Sum_probs=59.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHH
Q 003014 448 GETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRA 510 (857)
Q Consensus 448 e~~~~tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~ 510 (857)
...+.++|||+++|++||++++|+++|+|++++++|++||||++|.++++||++|++||.+++
T Consensus 8 ~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r~ 70 (71)
T 1uzc_A 8 TYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTE 70 (71)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHhc
Confidence 446889999999999999999999999999999999999999999999999999999999864
No 7
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=99.67 E-value=1.2e-16 Score=143.34 Aligned_cols=82 Identities=20% Similarity=0.384 Sum_probs=66.1
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCe
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKV 309 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~ 309 (857)
+...++.+|+++++++||+||||+.|++|+|++|........ ..+.....|+ .+|+++.+.+|++||||+.|++
T Consensus 6 ~~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~~~~~~-----~~~~~~~~LP-~gWe~~~~~~G~~Yy~n~~t~~ 79 (90)
T 2kxq_A 6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSN-----INCEELGPLP-PGWEIRNTATGRVYFVDHNNRT 79 (90)
T ss_dssp SCCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSCSSSCS-----CCGGGTCCCC-SSCCEEECTTSCEEEEETTTTE
T ss_pred CCCCCCCCcEEEECCCCCEEEEECCCCeEeeecccccccccc-----cCcccccccC-CCceEEECCCCCEEEEECCCCc
Confidence 345699999999999999999999999999999986542110 0111122455 7899999999999999999999
Q ss_pred eeccCChh
Q 003014 310 SSWQIPSE 317 (857)
Q Consensus 310 S~We~P~e 317 (857)
|+|+.|..
T Consensus 80 t~w~~Pr~ 87 (90)
T 2kxq_A 80 TQFTDPRL 87 (90)
T ss_dssp EESSCTTT
T ss_pred EecCCCCc
Confidence 99999964
No 8
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=99.64 E-value=3e-16 Score=140.22 Aligned_cols=79 Identities=18% Similarity=0.408 Sum_probs=64.8
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCe
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKV 309 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~ 309 (857)
....++.+|+++++++||+||||+.|++|+|++|........ .....+|+ .+|+++.+.+|++||||+.|++
T Consensus 9 ~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~~~~~~-------~~~~~~LP-~gWe~~~~~~G~~Yy~nh~t~~ 80 (88)
T 1tk7_A 9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVS-------LINEGPLP-PGWEIRYTAAGERFFVDHNTRR 80 (88)
T ss_dssp TTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCTTTCCH-------HHHSCSSC-SSCEEEEETTTEEEEEETTTTE
T ss_pred ccCCCCCCcEEEECCCCCEEEEECCCCCeEeecccccccccc-------cccccccC-CceEEEECCCCCEEEEECCCCc
Confidence 345689999999999999999999999999999987542110 00112455 6899999999999999999999
Q ss_pred eeccCCh
Q 003014 310 SSWQIPS 316 (857)
Q Consensus 310 S~We~P~ 316 (857)
|+|+.|.
T Consensus 81 ttw~~Pr 87 (88)
T 1tk7_A 81 TTFEDPR 87 (88)
T ss_dssp EESSSSC
T ss_pred EeCCCCC
Confidence 9999995
No 9
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=99.64 E-value=2.2e-17 Score=143.22 Aligned_cols=71 Identities=37% Similarity=0.761 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q 003014 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 236 ~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
++|+++++++|++||||+.|++|+|++|..+....+ ...++ .+|+++.+.+|++||||+.|++|+|++|
T Consensus 2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~~~~~~~----------~~~lp-~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P 70 (75)
T 1o6w_A 2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEE----------LLLRE-NGWKAAKTADGKVYYYNPTTRETSWTIP 70 (75)
T ss_dssp CCEEEEECTTCCEEEEETTTTEEESSCCHHHHHHHH----------HHHHH-HTCEEEECTTCCEEEEETTTTEEESSCC
T ss_pred CCCeEEECCCCCeEEEECCCCCEEeecchhhccccc----------ccCCC-CeEEEEECCCCCEEEEECCCCCEECCCC
Confidence 489999999999999999999999999986532110 01122 6899999999999999999999999999
Q ss_pred hh
Q 003014 316 SE 317 (857)
Q Consensus 316 ~e 317 (857)
..
T Consensus 71 ~~ 72 (75)
T 1o6w_A 71 AF 72 (75)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 10
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=99.62 E-value=1.4e-16 Score=129.78 Aligned_cols=56 Identities=25% Similarity=0.454 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCchHhhhccc-ccCchhhcccC-HHHHHHHHHHHHHHH
Q 003014 454 KEECIIKFKEMLKERGVAPFSKWEKELPKI-VFDPRFKAIQS-QSARRALFERYVKTR 509 (857)
Q Consensus 454 kEEa~~aFk~mL~e~~V~~~stWe~~~~~i-~~DPRy~al~~-~~ERK~lFeeY~~~r 509 (857)
+|||+++|++||++++|++.|+|+++|+.| ++||||++|++ +.+||++|++|+.+|
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~~r 59 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSNR 59 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 89999999995 999999999999753
No 11
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.59 E-value=1.2e-16 Score=138.28 Aligned_cols=76 Identities=32% Similarity=0.574 Sum_probs=69.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 684 ERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRG 760 (857)
Q Consensus 684 er~R~~~rr~ea~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls~~drekLF~dhi~~L~ek~~~~Fr~ 760 (857)
+++|+++++.||+.+|++||+|+|++|+.+|+|++++|++|+||. .+..|+..++++||++||+.|++||+++|++
T Consensus 8 dkere~h~r~EA~~~F~aLL~DlIr~pd~sW~Eakr~LrKD~R~~-~~~~Ld~~ekE~LF~eHi~~L~~K~r~~f~~ 83 (85)
T 2dof_A 8 DREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWE-SGSLLEREEKEKLFNEHIEALTKKKRESGPS 83 (85)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHSSTHH-HHTTSCHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhccCcccc-cCCcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445678889999999999999999999999999999999999987 4568999999999999999999999988863
No 12
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=99.41 E-value=5.8e-14 Score=114.33 Aligned_cols=53 Identities=28% Similarity=0.458 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHH
Q 003014 455 EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 507 (857)
Q Consensus 455 EEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~ 507 (857)
++++..|++||.+++|++|++|+.+..+|++||||.+|.++..|+.+|++||+
T Consensus 6 ~d~k~~F~~LL~e~~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 6 IDERNIFFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp CSSHHHHHHHHHHTTCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 45889999999999999999999999999999999999999999999999996
No 13
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=99.37 E-value=4.7e-13 Score=118.06 Aligned_cols=68 Identities=31% Similarity=0.511 Sum_probs=62.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHHH
Q 003014 446 EDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEE 513 (857)
Q Consensus 446 eee~~~~tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~keE 513 (857)
+.++....++.++.+|+.||++++|+++++|++++++|.+||||.+|.+..+|+++|++||.++.+++
T Consensus 8 EkEek~~r~~k~~~~F~~mL~e~~I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~~e 75 (83)
T 2doe_A 8 EKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNL 75 (83)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999999999999999999999999999999999999999999999999887654
No 14
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.3e-11 Score=104.15 Aligned_cols=44 Identities=27% Similarity=0.734 Sum_probs=40.5
Q ss_pred CCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhhHH
Q 003014 277 PTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTE 320 (857)
Q Consensus 277 p~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~~~ 320 (857)
..|++..++++++|++|+|.|||+||||+.|++|+|++|++|+.
T Consensus 9 ~~p~s~~pipgt~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~ 52 (73)
T 2dk7_A 9 AKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLIG 52 (73)
T ss_dssp CCEEEEEECSSSSCEEEEESSSCEEEEETTTTEECSSCCTTTTT
T ss_pred CCCCCCCCCCCCCcEEEECCCCCEEEecCcccceeccCChHhcC
Confidence 45777778999999999999999999999999999999999874
No 15
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=99.04 E-value=1.6e-10 Score=87.78 Aligned_cols=36 Identities=44% Similarity=0.770 Sum_probs=32.4
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
....+..|++|++++|++||||..|++|+|++|.+|
T Consensus 5 ~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 5 SSGTEEIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CCCCCCSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred cCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 345677999999999999999999999999999865
No 16
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=99.03 E-value=1.6e-10 Score=86.33 Aligned_cols=34 Identities=50% Similarity=0.789 Sum_probs=31.3
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCCCCC
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 267 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~ 267 (857)
....|++|.+++|++||||..|++|+|++|.+|+
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~k 37 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQELK 37 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSCC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCccC
Confidence 4458999999999999999999999999999874
No 17
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.92 E-value=3.5e-10 Score=86.37 Aligned_cols=36 Identities=47% Similarity=0.802 Sum_probs=27.6
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
+....+.+|++|++++|++||||..|++|+|++|.+
T Consensus 6 ~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 6 SVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp ------CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred cCCCCCCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 444567799999999999999999999999999963
No 18
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.88 E-value=2.8e-10 Score=100.33 Aligned_cols=57 Identities=37% Similarity=0.652 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCcccccccc-ccHHHHHHHHHHHHHH
Q 003014 589 RAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVRELKA 646 (857)
Q Consensus 589 R~~~~~~F~~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~~-~dr~~lFeeyi~~L~~ 646 (857)
..+++++|+.||++.+ |+++|+|.+|+.+|.+||||.+|.. .+|+.||++||..|..
T Consensus 16 ~~k~~~~F~~mL~e~~-I~~~s~W~~~~~~i~~Dpry~av~~~~eRe~lF~eYi~~l~~ 73 (83)
T 2doe_A 16 GEKIKSDFFELLSNHH-LDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAK 73 (83)
T ss_dssp HHHHHHHHHHHHHHTT-CCTTCCHHHHHHHHTTSTHHHHCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhCC-CCCCCcHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 4567899999999996 9999999999999999999999986 7999999999999965
No 19
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.85 E-value=3.2e-09 Score=92.09 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCchHhhhcccccCchhhcccCHHHHHHHHHHHHHHHHHH
Q 003014 454 KEECIIKFKEMLKERG--VAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEE 512 (857)
Q Consensus 454 kEEa~~aFk~mL~e~~--V~~~stWe~~~~~i~~DPRy~al~~~~ERK~lFeeY~~~r~ke 512 (857)
..-++.+|+.||++.+ |..+++|+++.++|.+||+|++|.+..+|+.+|++|+..+.++
T Consensus 8 ~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkek 68 (77)
T 2cqn_A 8 MKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHE 68 (77)
T ss_dssp HHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4457889999999996 9999999999999999999999999999999999999877543
No 20
>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=3.8e-10 Score=95.33 Aligned_cols=34 Identities=26% Similarity=0.568 Sum_probs=32.2
Q ss_pred CcEEEEcCCCCeeeecCCCCceeccCCCCCCCCC
Q 003014 237 AWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEP 270 (857)
Q Consensus 237 ~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~ 270 (857)
.|.+|+++|||+||||..|++|+|++|++|++..
T Consensus 21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~eLk~~~ 54 (73)
T 2dk7_A 21 PWCVVWTGDERVFFYNPTTRLSMWDRPDDLIGRA 54 (73)
T ss_dssp SCEEEEESSSCEEEEETTTTEECSSCCTTTTTCS
T ss_pred CcEEEECCCCCEEEecCcccceeccCChHhcCHH
Confidence 6999999999999999999999999999999654
No 21
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=98.83 E-value=1.8e-09 Score=80.60 Aligned_cols=33 Identities=39% Similarity=0.870 Sum_probs=30.6
Q ss_pred CCCCcEEEEcCCCceEEEeCCCCeeeccCChhh
Q 003014 286 TGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318 (857)
Q Consensus 286 ~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~ 318 (857)
....|.++.+.+|++||||..|++|+|++|.+|
T Consensus 4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~~ 36 (37)
T 1e0l_A 4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36 (37)
T ss_dssp SSCSCEEEECTTSCEEEEETTTTEEESSCCSSC
T ss_pred CCCCeEEEECCCCCEEEEECCCCCEEecCCCcc
Confidence 346899999999999999999999999999876
No 22
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.82 E-value=3.4e-09 Score=80.46 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=32.0
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
...++.+|+++.|++|++||||+.|++|+|++|..
T Consensus 5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~ 39 (40)
T 2ysh_A 5 SSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS 39 (40)
T ss_dssp CSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 35589999999999999999999999999999973
No 23
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.78 E-value=3.8e-09 Score=78.79 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.1
Q ss_pred CCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 233 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 233 ~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
.++.+|+++.+++|++||||+.|++|+|++|..
T Consensus 3 ~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 588999999999999999999999999999974
No 24
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.77 E-value=4.6e-09 Score=83.44 Aligned_cols=37 Identities=41% Similarity=0.892 Sum_probs=33.4
Q ss_pred CCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCC
Q 003014 236 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDK 272 (857)
Q Consensus 236 ~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~ 272 (857)
..|.+|++++|+.||||..|++|+|++|.+|+...++
T Consensus 7 ~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~~~~ 43 (50)
T 2dk1_A 7 GRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKK 43 (50)
T ss_dssp CCEEECCCSTTCCCEEESSSCCEESSCCTTCCCCCST
T ss_pred CCeEEEECCCCCEEEEECCCCCEEeeCChhhhhhHHh
Confidence 4799999999999999999999999999999765544
No 25
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.75 E-value=1.1e-08 Score=88.64 Aligned_cols=61 Identities=16% Similarity=0.412 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhcCC-HHHHHHHHHHHHHHhhhHH
Q 003014 521 QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNERVLPLKRAA 581 (857)
Q Consensus 521 ~k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~-~~eRe~LF~Eyi~~Lkk~e 581 (857)
+++++++|+.||.++.+.|+.+++|.+++.+|.++++|++|+ +.+|+.||++||..|+++.
T Consensus 8 ~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lkekc 69 (77)
T 2cqn_A 8 MKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHEC 69 (77)
T ss_dssp HHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 456778999999987567999999999999999999999995 5899999999999997653
No 26
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.74 E-value=6.5e-09 Score=77.08 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
..++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 3 PPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp SCSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 358899999999999999999999999999995
No 27
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.71 E-value=8.9e-09 Score=79.44 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=31.8
Q ss_pred CCCCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 233 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 233 ~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
.++.+|+++.+++|++||||+.|++|+|++|..+
T Consensus 8 ~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 8 PLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp CCCSSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CCCCCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 4788999999999999999999999999999865
No 28
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.1e-08 Score=78.91 Aligned_cols=35 Identities=26% Similarity=0.603 Sum_probs=32.3
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
...++.+|+++.|++|++||||+.|++|+|++|..
T Consensus 5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp CCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCCCCCCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 35689999999999999999999999999999974
No 29
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.71 E-value=1.2e-08 Score=77.00 Aligned_cols=33 Identities=21% Similarity=0.558 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
..++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 5 ~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 5 GPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCCCSSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCCCCCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 458999999999999999999999999999996
No 30
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.69 E-value=9.4e-09 Score=78.03 Aligned_cols=31 Identities=42% Similarity=0.830 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCChhh
Q 003014 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318 (857)
Q Consensus 288 ~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~ 318 (857)
..|.++.+.+|++||||..|++|+|++|.+|
T Consensus 10 ~~W~e~~~~~G~~YYyN~~T~eS~We~P~~~ 40 (40)
T 2ysi_A 10 EIWVENKTPDGKVYYYNARTRESAWTKPDGV 40 (40)
T ss_dssp CSEEEEECTTSCEEEEETTTCCEESSCCSCC
T ss_pred CCCEEEECCCCCEEEEECCCCCEEeCCCCCC
Confidence 6899999999999999999999999999864
No 31
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.68 E-value=1.2e-08 Score=75.60 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
..++.+|+++.|++|++||||+.|++|+|++|.
T Consensus 3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 3 PGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TTCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 358899999999999999999999999999995
No 32
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.67 E-value=7.9e-09 Score=77.62 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=31.1
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
...++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 4 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 4 EGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp -CCCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred cCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 3468999999999999999999999999999995
No 33
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.67 E-value=1.7e-08 Score=76.62 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.6
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
...++.+|++..+++|++||||+.|++|+|++|.
T Consensus 5 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 5 SSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp SSCCCTTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 3568999999999999999999999999999996
No 34
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.67 E-value=1.2e-08 Score=77.91 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
...++.+|+++.+++|++||||+.|++|+|++|.
T Consensus 6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred cCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 3458999999999999999999999999999995
No 35
>2dof_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.64 E-value=2.9e-08 Score=86.22 Aligned_cols=67 Identities=27% Similarity=0.558 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccCCHHHHHHhcCCCcccc---CCChhHHHHHHHHHHHHHHHhhhhcc
Q 003014 749 TLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYS---KMPRKEREALWRRHAEEIQRKHKSSL 825 (857)
Q Consensus 749 ~L~ek~~~~Fr~LL~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~D~Ry~---~l~~~eRe~lf~~~ie~l~~~~k~~~ 825 (857)
...+.+...|+.||.|+| .++..+|.+++++|+.|+||. .|+.++++.||++||+.|.+|.++.|
T Consensus 14 h~r~EA~~~F~aLL~DlI------------r~pd~sW~Eakr~LrKD~R~~~~~~Ld~~ekE~LF~eHi~~L~~K~r~~f 81 (85)
T 2dof_A 14 HKREEAIQNFKALLSDMV------------RSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTKKKRESG 81 (85)
T ss_dssp HHHHHHHHHHHHHHHHHT------------CCSSCCHHHHHHHHHHSSTHHHHTTSCHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHHHHHh------------cCCCCCHHHHHHHhccCcccccCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778999999999995 456779999999999999998 57889999999999999999999988
Q ss_pred cc
Q 003014 826 DQ 827 (857)
Q Consensus 826 ~~ 827 (857)
++
T Consensus 82 ~~ 83 (85)
T 2dof_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred hh
Confidence 75
No 36
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=98.63 E-value=1.8e-08 Score=77.72 Aligned_cols=31 Identities=29% Similarity=0.761 Sum_probs=28.7
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCChhh
Q 003014 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 318 (857)
Q Consensus 288 ~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~ 318 (857)
.+|+++.+.+|++||||..|++|+|++|..+
T Consensus 11 ~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~~ 41 (43)
T 1ymz_A 11 PGWERRTDVEGKVYYFNVRTLTTTWERPTII 41 (43)
T ss_dssp SSEEEEECTTSCEEEEETTTTEEESSCCCSC
T ss_pred CCCEEEECCCCCEEEEECCCCCCcccCCccc
Confidence 5799999999999999999999999999764
No 37
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.62 E-value=2.4e-08 Score=79.11 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=33.5
Q ss_pred CCCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 229 ASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 229 ~~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
.....++.+|++..+++|++||||+.|++|+|++|..
T Consensus 9 ~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 3556799999999999999999999999999999974
No 38
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.62 E-value=2.9e-08 Score=75.33 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=31.7
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
...++.+|++..+++|++||||+.|+.|+|+.|.
T Consensus 5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCCCCSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred cCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 4568999999999999999999999999999996
No 39
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=98.60 E-value=5.5e-08 Score=82.98 Aligned_cols=54 Identities=24% Similarity=0.413 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhcCCH-HHHHHHHHHHHHHh
Q 003014 522 KAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPL 577 (857)
Q Consensus 522 k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~-~eRe~LF~Eyi~~L 577 (857)
+.|+++|+.||.+. +|+++++|..+.++|.+||||.+|.. .+|+++|++|+...
T Consensus 15 eea~~~F~~LL~e~--~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ey~~~r 69 (71)
T 1uzc_A 15 EEAKQAFKELLKEK--RVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT 69 (71)
T ss_dssp HHHHHHHHHHHHHT--TCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc--CcCCCCCHHHHHHHHccCccccccCCHHHHHHHHHHHHHHh
Confidence 46788999999997 59999999999999999999999974 99999999999654
No 40
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.59 E-value=3.9e-08 Score=76.94 Aligned_cols=36 Identities=11% Similarity=0.351 Sum_probs=32.8
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
....++.+|++..+++|++||||+.|++|+|+.|..
T Consensus 7 ~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 7 EEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 345699999999999999999999999999999974
No 41
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.58 E-value=2.9e-08 Score=80.24 Aligned_cols=35 Identities=29% Similarity=0.606 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEcC-CCCeeeecCCCCceeccCCCCC
Q 003014 232 NEQLDAWTAHKTD-TGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 232 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~StWekP~~l 266 (857)
..++.+|+++.+. +|++||||+.|++|+|++|...
T Consensus 6 ~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 6 TGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 4599999999987 8999999999999999999864
No 42
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=98.56 E-value=3.5e-08 Score=75.31 Aligned_cols=31 Identities=35% Similarity=0.876 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 287 GTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 287 ~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
..+|.++.+.+|++||||..|++|+|++|.+
T Consensus 11 ~~~W~e~~~~~G~~YYyN~~T~eS~We~P~e 41 (41)
T 1ywi_A 11 KSMWTEHKSPDGRTYYYNTETKQSTWEKPDD 41 (41)
T ss_dssp -CCEEEEEETTTEEEEEETTTTEEEESCC--
T ss_pred CCCcEEEECCCCCEEEEECCCCCEEeCCCCC
Confidence 3689999999999999999999999999974
No 43
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.54 E-value=4.4e-08 Score=77.71 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=31.5
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
...++.+|+++.+++|++||||+.|++|+|++|..
T Consensus 10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp --CCCTTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 34589999999999999999999999999999975
No 44
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.53 E-value=7.2e-08 Score=75.42 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=31.7
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
...++.+|++..+++|++||||+.|++|+|+.|.
T Consensus 9 ~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr 42 (46)
T 2l4j_A 9 SGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPR 42 (46)
T ss_dssp TSCCCTTCEEEECTTSCEEEEETTTTEEECSCCS
T ss_pred CCCCCcCceeEECCCCCEEEEECCCCCEeCCCCC
Confidence 3458999999999999999999999999999997
No 45
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.52 E-value=5.9e-08 Score=74.43 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 6 ~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 6 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp SCCCSSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 4589999999999999999999999999999974
No 46
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.52 E-value=2e-08 Score=79.81 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=31.9
Q ss_pred CCCcEEEEcCCCceEEEeCCCCeeeccCChhhHHh
Q 003014 287 GTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTEL 321 (857)
Q Consensus 287 ~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~~~~ 321 (857)
.+.|.++.+.+|+.||||..|++|+|++|.+|...
T Consensus 6 ~~~W~e~~s~~G~~YYyN~~T~eS~WekP~~~~~~ 40 (50)
T 2dk1_A 6 SGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGD 40 (50)
T ss_dssp SCCEEECCCSTTCCCEEESSSCCEESSCCTTCCCC
T ss_pred CCCeEEEECCCCCEEEEECCCCCEEeeCChhhhhh
Confidence 46899999999999999999999999999987653
No 47
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=98.52 E-value=8e-08 Score=84.19 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhcCCHHHHHHHHHHHHHHhhhHHHH
Q 003014 522 KAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEE 583 (857)
Q Consensus 522 k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfkal~~~eRe~LF~Eyi~~Lkk~e~E 583 (857)
..++..|+.||.+. +|+++++|..+.+++.+||||.+|...+|+++|++|+....+.+++
T Consensus 17 eea~~~Fk~LL~e~--~V~p~~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y~~~r~~eere 76 (82)
T 2dod_A 17 EARMKQFKDMLLER--GVSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERR 76 (82)
T ss_dssp HHHHHHHHHHHHHT--TCCSSSCHHHHHHHHHTCSGGGTSCHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHc--CcCCCCCHHHHHHHHccCCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999987 6999999999999999999999999999999999999876655443
No 48
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.51 E-value=8.3e-08 Score=76.05 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.9
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|++..+++|++||||+.|++|+|++|..
T Consensus 10 ~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 10 LPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCCCTTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCCCCCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 4589999999999999999999999999999985
No 49
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=6.3e-08 Score=79.79 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
+...++.+|++..|++|++||||+.|+.|+|+.|.
T Consensus 10 ~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~ 44 (60)
T 2yse_A 10 SELELPAGWEKIEDPVYGIYYVDHINRKTQYENPV 44 (60)
T ss_dssp CCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHH
T ss_pred CCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCC
Confidence 45679999999999999999999999999999996
No 50
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.50 E-value=5e-08 Score=67.60 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCCeeeecCCCCceeccCC
Q 003014 236 DAWTAHKTDTGIVYYYNAVTGESTYEKP 263 (857)
Q Consensus 236 ~~W~e~~~~~Gr~YYyN~~T~~StWekP 263 (857)
++|+ +...+|+.||||..|++|+|++|
T Consensus 1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 1 PGWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence 4799 77789999999999999999998
No 51
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=98.49 E-value=9.4e-08 Score=71.17 Aligned_cols=33 Identities=39% Similarity=0.795 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|+++.+.+|++||||+.|++|+|++|..
T Consensus 3 ~LP-~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~ 35 (37)
T 1e0m_A 3 GLP-PGWDEYKTHNGKTYYYNHNTKTSTWTDPRM 35 (37)
T ss_dssp CSC-TTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCC-CCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence 355 689999999999999999999999999964
No 52
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.48 E-value=9.1e-08 Score=76.17 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
...++.+|+++.+.+|++||||+.|++|+|++|...
T Consensus 9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~ 44 (50)
T 1i5h_W 9 LGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ 44 (50)
T ss_dssp CSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred CCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence 345899999999999999999999999999999753
No 53
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.45 E-value=1.7e-07 Score=74.32 Aligned_cols=45 Identities=27% Similarity=0.427 Sum_probs=37.5
Q ss_pred CceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 256 GESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 256 ~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+.|+|+.|..- ..|+ .+|++..+.+|++||+|+.|++|+|+.|..
T Consensus 1 ~tt~W~~P~~~----------------~~LP-~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 1 GSSGSSGPLER----------------EGLP-PGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp CCSSSCCSCCS----------------SCCC-TTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CeecCcCCCCC----------------CCCC-cCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 46899999741 1345 689999999999999999999999999963
No 54
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.43 E-value=1.4e-07 Score=70.67 Aligned_cols=32 Identities=25% Similarity=0.652 Sum_probs=29.8
Q ss_pred CCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 233 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 233 ~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
.++.+|++..+.+| +||||+.|++|+|++|..
T Consensus 3 ~LP~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 3 DLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp CSCTTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred cCCCCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 48899999999999 999999999999999973
No 55
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Probab=98.43 E-value=1.7e-07 Score=71.49 Aligned_cols=33 Identities=18% Similarity=0.675 Sum_probs=29.9
Q ss_pred cCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 283 EHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 283 ~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
.+|+ .+|++..+.+|++||||+.|++|+|+.|.
T Consensus 7 ~~LP-~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr 39 (41)
T 1wr7_A 7 SFLP-PGWEMRIAPNGRPFFIDHNTKTTTWEDPR 39 (41)
T ss_dssp CSSC-TTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred CCCC-CCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence 3566 68999999999999999999999999996
No 56
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.41 E-value=2.1e-07 Score=70.58 Aligned_cols=32 Identities=28% Similarity=0.733 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
.|+ .+|+++.+.+|++||||..|++|+|++|.
T Consensus 7 ~LP-~gW~~~~d~~Gr~YY~n~~T~~t~We~P~ 38 (40)
T 2ysh_A 7 GLP-PGWQSYLSPQGRRYYVNTTTNETTWERPS 38 (40)
T ss_dssp SCC-TTCEEEECTTSCEEEECSSSCCEESSSCC
T ss_pred CCC-CCceEEECCCCCEEEEECCCCCEeCCCCC
Confidence 455 68999999999999999999999999995
No 57
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.39 E-value=5.6e-08 Score=77.97 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEcC-CCCeeeecCCCCceeccCCCCC
Q 003014 232 NEQLDAWTAHKTD-TGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 232 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~StWekP~~l 266 (857)
..++.+|+++.+. +|+.||||+.|++|+||+|.+.
T Consensus 9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~ 44 (52)
T 2jx8_A 9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG 44 (52)
T ss_dssp HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence 4478899999985 8999999999999999999864
No 58
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=98.39 E-value=2e-07 Score=68.99 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=29.0
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|+++.+.+|++||||+.|++|+|++|.
T Consensus 4 ~LP-~GWe~~~d~~G~~Yy~n~~t~~t~We~P~ 35 (36)
T 1wr3_A 4 PLP-PGWEEKVDNLGRTYYVNHNNRSTQWHRPS 35 (36)
T ss_dssp CSC-TTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred CCC-CCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence 355 68999999999999999999999999995
No 59
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.39 E-value=1.8e-07 Score=70.47 Aligned_cols=32 Identities=19% Similarity=0.627 Sum_probs=29.5
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
..++.+|+++.+++| .||||+.|++|+|++|.
T Consensus 7 ~~LP~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 7 GGLPPGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCCCTTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCCCCCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 458999999999999 59999999999999995
No 60
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=98.37 E-value=2.3e-07 Score=64.31 Aligned_cols=26 Identities=27% Similarity=0.676 Sum_probs=24.6
Q ss_pred CcEEEEcCCCceEEEeCCCCeeeccCC
Q 003014 289 DWALVTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 289 ~W~e~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
+|+ +....|+.||||..|++|+|++|
T Consensus 2 gWe-~~~~~g~~YYyN~~T~~s~We~P 27 (27)
T 1e0n_A 2 GWE-IIHENGRPLYYNAEQKTKLHYPP 27 (27)
T ss_dssp CEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred CCe-EECCCCCeEEEECCCCCEeccCC
Confidence 699 88899999999999999999998
No 61
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=98.34 E-value=3.4e-07 Score=73.71 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|++..+.+|++||||+.|++|+|+.|..
T Consensus 17 ~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 17 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp SCCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 4589999999999999999999999999999974
No 62
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}
Probab=98.33 E-value=3.1e-07 Score=68.88 Aligned_cols=32 Identities=41% Similarity=0.744 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|.
T Consensus 6 ~LP-~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr 37 (38)
T 2law_A 6 PLP-DGWEQAMTQDGEIYYINHKNKTTSWLDPR 37 (38)
T ss_dssp CCS-SSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred CCC-CCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 355 68999999999999999999999999995
No 63
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.33 E-value=4.5e-07 Score=74.07 Aligned_cols=37 Identities=19% Similarity=0.443 Sum_probs=33.3
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
....++.+|++..+.+|++||||+.|+.|+|+.|...
T Consensus 11 ~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~ 47 (57)
T 2ysd_A 11 NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL 47 (57)
T ss_dssp CCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred CCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence 3446999999999999999999999999999999854
No 64
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A
Probab=98.32 E-value=4.5e-07 Score=69.51 Aligned_cols=33 Identities=18% Similarity=0.503 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 7 ~LP-~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~ 39 (42)
T 2djy_A 7 PLP-PGWEIRNTATGRVYFVDHNNRTTQFTDPRL 39 (42)
T ss_dssp CCC-SSEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCC-cCcEEEECCCCCEEEEECCCCCEeCCCCCC
Confidence 466 689999999999999999999999999964
No 65
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}
Probab=98.31 E-value=4.3e-07 Score=68.47 Aligned_cols=32 Identities=28% Similarity=0.658 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|++..+.+|++||||+.|++|+|++|.
T Consensus 6 ~LP-~gWe~~~d~~G~~YY~n~~t~~t~We~P~ 37 (39)
T 2kyk_A 6 PLP-PGWERRVDNMGRIYYVDHFTRTTTWQRPT 37 (39)
T ss_dssp CCC-SSCEEEECTTSCEEEECSSSCCEECCCCC
T ss_pred CCC-CCcEEEEcCCCCEEEEECCCCCEeccCCC
Confidence 355 68999999999999999999999999995
No 66
>2juc_A PRE-mRNA-splicing factor URN1; FF, helical bundle, solution, mRNA processing, nucleus, spliceosome, unknown function; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=3.4e-07 Score=74.69 Aligned_cols=50 Identities=22% Similarity=0.450 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhcCCCCCCCChHHHHHHhccCcccccccc-ccHHHHHHHHHH
Q 003014 592 AASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVR 642 (857)
Q Consensus 592 ~~~~F~~LL~e~~~It~~T~W~ev~~~L~~DpRy~~l~~-~dr~~lFeeyi~ 642 (857)
++..|++||.+. .|++.++|......|.+||||.+|+. +.|+++|++|++
T Consensus 8 ~k~~F~~LL~e~-~InPys~W~~e~~ki~~DpRY~~l~s~~~R~e~F~ew~r 58 (59)
T 2juc_A 8 ERNIFFELFDRY-KLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEWCG 58 (59)
T ss_dssp SHHHHHHHHHHT-TCCTTTCSHHHHHHHSSSTTGGGSSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCCCCCchhhhcccccCCCCeeecCChHHHHHHHHHHhh
Confidence 356899999998 69999999999999999999999997 899999999986
No 67
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=98.31 E-value=4.6e-07 Score=66.97 Aligned_cols=32 Identities=25% Similarity=0.661 Sum_probs=28.9
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|++..+.+|++||||+.|++|+|++|.
T Consensus 4 ~LP-~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~ 35 (36)
T 1wr4_A 4 GLP-SGWEERKDAKGRTYYVNHNNRTTTWTRPI 35 (36)
T ss_dssp TCC-TTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred CCC-CCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence 355 68999999999999999999999999995
No 68
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=98.30 E-value=2.9e-07 Score=79.49 Aligned_cols=33 Identities=39% Similarity=0.787 Sum_probs=30.5
Q ss_pred CCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 233 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 233 ~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
.+..+|+++.+++|++||||+.|++|+|++|.+
T Consensus 43 ~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~e 75 (75)
T 2jxw_A 43 AVKTVWVEGLSEDGFTYYYNTETGESRWEKPDD 75 (75)
T ss_dssp SCCCSEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCccEEEEECCCCCEEEEECcCCCEeccCcCC
Confidence 467789999999999999999999999999974
No 69
>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.29 E-value=3.3e-07 Score=72.62 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|++..|++|++||+|+.|++|+|+.|..
T Consensus 12 ~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~ 45 (49)
T 2dwv_A 12 EGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSG 45 (49)
T ss_dssp SCCCTTEEEEEETTTEEEEEETTTTEEESSCCCC
T ss_pred CCCCcCcEEEECCCCCEEEEECCCCCEeccCcCC
Confidence 4589999999999999999999999999999974
No 70
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.27 E-value=4.3e-07 Score=72.50 Aligned_cols=34 Identities=24% Similarity=0.595 Sum_probs=31.1
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
...++++|+++.|++| +||||+.|+.++|++|..
T Consensus 17 ~~~LPpGW~~~~D~sG-tYY~h~~T~tTQWerP~~ 50 (55)
T 2e45_A 17 DSDLPAGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 50 (55)
T ss_dssp CSCCCTTEEEEEETTE-EEEEETTTCCEESSCCCC
T ss_pred CCCCCCCCeEeecCCC-CEEEEcCCCCCccCCCCC
Confidence 3459999999999999 999999999999999964
No 71
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=6.2e-07 Score=69.10 Aligned_cols=33 Identities=27% Similarity=0.616 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|+++.+.+|++||||+.|++|+|++|..
T Consensus 7 ~LP-~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~ 39 (43)
T 2dmv_A 7 GLP-PGWEQRVDQHGRVYYVDHVEKRTTWDRPSG 39 (43)
T ss_dssp SCC-TTEEEEECTTSCEEEEETTTCCEESSCSSS
T ss_pred CCC-CCceEEECCCCCEEEEECCCCCEecCCcCC
Confidence 455 689999999999999999999999999964
No 72
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.25 E-value=7.3e-07 Score=67.62 Aligned_cols=32 Identities=34% Similarity=0.631 Sum_probs=29.1
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP-~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~ 38 (40)
T 2ysg_A 7 GLP-YGWEEAYTADGIKYFINHVTQTTSWIHPV 38 (40)
T ss_dssp CCC-TTEEEEECSSSCEEEEESSSCCEECCCCC
T ss_pred CCC-CCcEEEEcCCCCEEEEECCCCcCcCCCCC
Confidence 455 68999999999999999999999999995
No 73
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=98.25 E-value=8.8e-07 Score=67.18 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=29.3
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|.
T Consensus 7 ~LP-~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 38 (40)
T 2ysf_A 7 GLP-EGWEMRFTVDGIPYFVDHNRRTTTYIDPR 38 (40)
T ss_dssp CCC-SSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred CCC-cCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence 456 68999999999999999999999999996
No 74
>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}
Probab=98.24 E-value=7.2e-07 Score=72.09 Aligned_cols=34 Identities=26% Similarity=0.706 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEcC-CCceEEEeCCCCeeeccCChhh
Q 003014 284 HLTGTDWALVTTN-DGKKYYYNSKMKVSSWQIPSEV 318 (857)
Q Consensus 284 ~~~~~~W~e~~t~-~Gr~YyyN~~T~~S~We~P~e~ 318 (857)
.|| .+|+++.+. +|++||||..|++|+|++|...
T Consensus 7 ~LP-~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~ 41 (54)
T 2jv4_A 7 GLP-AGWEVRHSNSKNLPYYFNPATRESRWEPPADT 41 (54)
T ss_dssp CCC-SSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred CCC-CCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence 455 689998875 8999999999999999999874
No 75
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=98.23 E-value=7.9e-07 Score=70.44 Aligned_cols=33 Identities=18% Similarity=0.638 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 12 ~LP-~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~ 44 (49)
T 2kpz_A 12 FLP-KGWEVRHAPNGRPFFIDHNTKTTTWEDPRL 44 (49)
T ss_dssp CCC-TTEEEEECTTSCEEEEETTTTEEESSCTTC
T ss_pred CCC-CCcEEEECCCCCEEEEECCCCCEecCCCCC
Confidence 455 689999999999999999999999999975
No 76
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=98.22 E-value=1.1e-06 Score=71.85 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccHHHHHHHh-cCCchhhcCCH--HHHHHHHHHHHH
Q 003014 522 KAAIEGFKQLLEEVSEDIDHSTDYQTFKKKW-GSDPRFEALDR--KDRELLLNERVL 575 (857)
Q Consensus 522 k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~-~~Dprfkal~~--~eRe~LF~Eyi~ 575 (857)
++|.++|++||.++ +|++.++|+.+.+.+ .+||+|.+|.+ .+|+.+|++|+.
T Consensus 3 eEae~aF~~lL~~~--~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y~~ 57 (59)
T 2b7e_A 3 MEAEKEFITMLKEN--QVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS 57 (59)
T ss_dssp THHHHHHHHHHHHT--TCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc--CCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHHHh
Confidence 35677999999986 699999999999999 89999999984 999999999985
No 77
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=98.20 E-value=1e-06 Score=71.23 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=32.3
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 266 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l 266 (857)
..++.+|+...+++|++||||+.|+.|+|+.|...
T Consensus 10 ~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~ 44 (54)
T 1wmv_A 10 GDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLA 44 (54)
T ss_dssp SCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSS
T ss_pred CCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCc
Confidence 45899999999999999999999999999999754
No 78
>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}
Probab=98.19 E-value=1.2e-06 Score=68.41 Aligned_cols=33 Identities=15% Similarity=0.616 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
.|+ .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 10 ~LP-~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~ 42 (46)
T 2ez5_W 10 PLP-PRWSMQVAPNGRTFFIDHASRRTTWIDPRN 42 (46)
T ss_dssp CCC-TTEEEEECTTSSEEEEETTTTEEESBCTTT
T ss_pred CCC-cCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence 455 689999999999999999999999999964
No 79
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=98.15 E-value=1.8e-07 Score=85.60 Aligned_cols=59 Identities=14% Similarity=0.370 Sum_probs=50.4
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeecc
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQ 313 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We 313 (857)
.+.+|+.+.++.|++||.|+.+.. . .++| .+|+...+.+|++||.|+.|++|+|+
T Consensus 46 ~p~~we~~~~~~~lV~~vn~~~d~------~------------------~pLP-~GWE~r~d~~Gr~YfIdH~tktTtW~ 100 (109)
T 3l4h_A 46 DARNFERYQHNRDLVNFINMFADT------R------------------LELP-RGWEIKTDQQGKSFFVDHNSRATTFI 100 (109)
T ss_dssp CTHHHHHHTTCHHHHHHHHTTCCT------T------------------SCCC-TTEEEEECTTCCEEEEETTTTEEESS
T ss_pred CCcChhhhcCcCCceEEeccCCCC------C------------------CCCC-CCCeEEECCCCCEEEEeCCCCCEeeC
Confidence 667999999999999999999731 1 1245 68999999999999999999999999
Q ss_pred CChh
Q 003014 314 IPSE 317 (857)
Q Consensus 314 ~P~e 317 (857)
.|..
T Consensus 101 dPRl 104 (109)
T 3l4h_A 101 DPRI 104 (109)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 9963
No 80
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=98.14 E-value=1.7e-06 Score=67.55 Aligned_cols=32 Identities=38% Similarity=0.705 Sum_probs=29.3
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|.
T Consensus 11 ~LP-~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr 42 (46)
T 2l4j_A 11 PLP-EGWEQAITPEGEIYYINHKNKTTSWLDPR 42 (46)
T ss_dssp CCC-TTCEEEECTTSCEEEEETTTTEEECSCCS
T ss_pred CCC-cCceeEECCCCCEEEEECCCCCEeCCCCC
Confidence 455 68999999999999999999999999996
No 81
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*
Probab=98.14 E-value=1.9e-06 Score=68.54 Aligned_cols=33 Identities=27% Similarity=0.654 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|| .+|++..+.+|++||||+.|++|+|++|..
T Consensus 11 ~LP-~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~ 43 (50)
T 1i5h_W 11 PLP-PGWEERTHTDGRVFFINHNIKKTQWEDPRM 43 (50)
T ss_dssp SCS-TTEEEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred CCC-cCcEEEEcCCCCEEEEECCCCCEEeeCCCC
Confidence 455 689999999999999999999999999974
No 82
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Probab=98.13 E-value=1.7e-06 Score=68.46 Aligned_cols=33 Identities=30% Similarity=0.676 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 11 ~LP-~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~ 43 (49)
T 2ysb_A 11 PLP-PGWSVDWTMRGRKYYIDHNTNTTHWSHPLE 43 (49)
T ss_dssp CCC-TTEEEEECSSSCEEEEETTTTEEESSCTTT
T ss_pred CCC-CCceEEECCCCCEEEEEcCCCCEEecCCCC
Confidence 455 689999999999999999999999999975
No 83
>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}
Probab=98.10 E-value=1.9e-06 Score=68.13 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
.|| .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 13 ~LP-~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~ 45 (49)
T 2zaj_A 13 ELP-AGWEKIEDPVYGIYYVDHINRKTQYENPSG 45 (49)
T ss_dssp CCC-TTEEEEEETTTEEEEEETTTTEEESSCCCS
T ss_pred CCC-cCceEEEcCCCCEEEEeCCCCCEecCCCCC
Confidence 355 689999999999999999999999999963
No 84
>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}
Probab=98.09 E-value=1.4e-06 Score=69.89 Aligned_cols=30 Identities=23% Similarity=0.648 Sum_probs=27.5
Q ss_pred CCcEEEEc-CCCceEEEeCCCCeeeccCChh
Q 003014 288 TDWALVTT-NDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 288 ~~W~e~~t-~~Gr~YyyN~~T~~S~We~P~e 317 (857)
.+|+++++ .+|+.||||..|++|+|+.|..
T Consensus 13 ~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~ 43 (52)
T 2jx8_A 13 AGWEKCWSRRENRPYYFNRFTNQSLWEMPVL 43 (52)
T ss_dssp HTCCEEEETTTTEEEEEETTTTEEESSCCCC
T ss_pred cCcEEEEccccCCEEEEECCCCCEEeCCCCC
Confidence 68999987 5899999999999999999975
No 85
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=98.05 E-value=2.8e-06 Score=76.22 Aligned_cols=33 Identities=33% Similarity=0.852 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCChhhHH
Q 003014 288 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTE 320 (857)
Q Consensus 288 ~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~~~ 320 (857)
.+|.++.+.+||+||||+.|++|+|++|.++..
T Consensus 14 ~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~~~ 46 (92)
T 2l5f_A 14 SMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKT 46 (92)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEESSCSGGGTC
T ss_pred CCcEEEEcCCCCEEEEECCCCceecccCccccc
Confidence 689999999999999999999999999998764
No 86
>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1
Probab=98.05 E-value=1.2e-06 Score=75.41 Aligned_cols=32 Identities=44% Similarity=0.759 Sum_probs=30.0
Q ss_pred CCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 234 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 234 ~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
++.+|+++.+++|++||||+.|++|+|+.|..
T Consensus 41 lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~ 72 (75)
T 1o6w_A 41 RENGWKAAKTADGKVYYYNPTTRETSWTIPAF 72 (75)
T ss_dssp HHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred CCCeEEEEECCCCCEEEEECCCCCEECCCCCC
Confidence 56799999999999999999999999999974
No 87
>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A
Probab=98.04 E-value=3.6e-06 Score=63.01 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=27.9
Q ss_pred CCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 285 LTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 285 ~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
|+ .+|+++.+.+| +||||+.|++|+|++|..
T Consensus 4 LP-~GWe~~~d~~g-~YY~n~~t~~tqWe~P~~ 34 (38)
T 2ho2_A 4 LP-AGWMRVQDTSG-TYYWHIPTGTTQWEPPGR 34 (38)
T ss_dssp SC-TTEEEEECSSC-EEEEETTTTEEESSCCCC
T ss_pred CC-CCceEEEeCCC-CEEEecCCCCEeccCCCC
Confidence 55 68999999999 999999999999999963
No 88
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=98.01 E-value=2e-06 Score=67.19 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|++..+++|+.||||++|++|+|+.|..
T Consensus 7 ~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 7 VPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCCCcCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 4589999999999999999999999999999974
No 89
>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=98.00 E-value=4.4e-06 Score=62.89 Aligned_cols=31 Identities=26% Similarity=0.693 Sum_probs=27.5
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+|+ .+|+++.+.+| .||||+.|++|+|++|.
T Consensus 8 ~LP-~GWe~~~~~~G-~YY~n~~t~~tqWe~P~ 38 (39)
T 2ysc_A 8 GLP-PGWRKIHDAAG-TYYWHVPSGSTQWQRPT 38 (39)
T ss_dssp CCC-TTEEEEEETTE-EEEEESSSCCEESSCCC
T ss_pred CCC-CCcEEEEcCCC-CEEEEcCCCCEeccCCC
Confidence 456 68999999889 59999999999999994
No 90
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A
Probab=97.99 E-value=4.1e-06 Score=67.38 Aligned_cols=33 Identities=15% Similarity=0.527 Sum_probs=29.8
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 18 ~LP-~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~ 50 (53)
T 2jmf_A 18 PLP-PGWEIRYTAAGERFFVDHNTRRTTFEDPRP 50 (53)
T ss_dssp CCC-TTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred CCC-cCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence 455 789999999999999999999999999964
No 91
>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=4.5e-06 Score=68.75 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
.|| .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 13 ~LP-~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~ 45 (60)
T 2yse_A 13 ELP-AGWEKIEDPVYGIYYVDHINRKTQYENPVL 45 (60)
T ss_dssp SCC-SSEEEEECSSSCEEEEETTTTEEESSCHHH
T ss_pred CCC-CCcEEEECCCCCEEEEeCCCCCeeccCCCc
Confidence 355 689999999999999999999999999975
No 92
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=97.95 E-value=5.8e-06 Score=67.51 Aligned_cols=33 Identities=27% Similarity=0.672 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|+ .+|++..+.+|++||||+.|++|+|+.|..
T Consensus 14 ~LP-~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~ 46 (57)
T 2ysd_A 14 PLP-ENWEMAYTENGEVYFIDHNTKTTSWLDPRC 46 (57)
T ss_dssp SCC-SSEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred CCC-cCcEEEECCCCCEEEEECCCCcEecCCCCC
Confidence 455 789999999999999999999999999975
No 93
>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1
Probab=97.94 E-value=4.2e-06 Score=74.44 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
..++.+|+++.+++|++||||+.|++|+|+.|.
T Consensus 55 ~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr 87 (88)
T 1tk7_A 55 GPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR 87 (88)
T ss_dssp CSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred cccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence 458899999999999999999999999999995
No 94
>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*
Probab=97.91 E-value=5.3e-06 Score=74.10 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|+++.+.+|++||||+.|++|+|+.|..
T Consensus 54 ~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~ 87 (90)
T 2kxq_A 54 GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRL 87 (90)
T ss_dssp CCCCSSCCEEECTTSCEEEEETTTTEEESSCTTT
T ss_pred cccCCCceEEECCCCCEEEEECCCCcEecCCCCc
Confidence 4689999999999999999999999999999974
No 95
>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}
Probab=97.86 E-value=1.1e-05 Score=65.22 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
.|+ .+|++..+.+|++||+|+.|++|+|+.|..
T Consensus 11 ~LP-~GWe~~~~~~G~~Yyinh~tk~TtwedPr~ 43 (54)
T 1wmv_A 11 DLP-YGWEQETDENGQVFFVDHINKRTTYLDPRL 43 (54)
T ss_dssp CSC-TTEEEEECTTSCEEEEESSSCCEESSCTTS
T ss_pred CCC-cCcEEEECCCCCEEEEeCCCCCEeecCCCC
Confidence 355 689999999999999999999999999964
No 96
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=97.82 E-value=8.1e-06 Score=63.71 Aligned_cols=33 Identities=27% Similarity=0.718 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|| .+|.++.+.+||+||+|..|++|+|+.|..
T Consensus 8 ~LP-~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~ 40 (46)
T 1jmq_A 8 PLP-AGWEMAKTSSGQRYFKNHIDQTTTWQDPRK 40 (46)
T ss_dssp CCC-TTBCCBCCSSCCCBEEETTTTEEESSCTTT
T ss_pred CCC-cCcEEEEcCCCceEEEEecCCceeecCCCc
Confidence 355 689999899999999999999999999975
No 97
>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=97.61 E-value=3.6e-05 Score=61.52 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
.|+ .+|+++.+..| .||||..|++++|++|.
T Consensus 19 ~LP-pGW~~~~D~sG-tYY~h~~T~tTQWerP~ 49 (55)
T 2e45_A 19 DLP-AGWMRVQDTSG-TYYWHIPTGTTQWEPPG 49 (55)
T ss_dssp CCC-TTEEEEEETTE-EEEEETTTCCEESSCCC
T ss_pred CCC-CCCeEeecCCC-CEEEEcCCCCCccCCCC
Confidence 355 68999999999 99999999999999995
No 98
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=97.54 E-value=4.1e-05 Score=75.98 Aligned_cols=34 Identities=32% Similarity=0.759 Sum_probs=29.0
Q ss_pred CCCCCCcEEEEcC-CCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTD-TGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|+++.++ +|++||||+.|++|+|++|..
T Consensus 8 ~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~ 42 (166)
T 3tc5_A 8 EKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSG 42 (166)
T ss_dssp --CCTTEEEEECTTTCCEEEEETTTCCEESSCC--
T ss_pred CCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCC
Confidence 3589999999995 999999999999999999974
No 99
>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}
Probab=97.41 E-value=8.2e-05 Score=68.17 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=32.2
Q ss_pred CCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 231 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 231 ~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
...++.||+...+++|++||.|+.|+.|||+.|..
T Consensus 70 ~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl 104 (109)
T 3l4h_A 70 RLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRI 104 (109)
T ss_dssp TSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCC
T ss_pred CCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCc
Confidence 34699999999999999999999999999999974
No 100
>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...
Probab=96.99 E-value=0.00041 Score=68.73 Aligned_cols=33 Identities=30% Similarity=0.751 Sum_probs=27.8
Q ss_pred CCCCCCcEEEEc-CCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTT-NDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t-~~Gr~YyyN~~T~~S~We~P~e 317 (857)
+|| .+|+++.+ .+|++||||+.|++|+|+.|..
T Consensus 9 ~LP-~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~ 42 (166)
T 3tc5_A 9 KLP-PGWEKAMSRSSGRVYYFNHITNASQWERPSG 42 (166)
T ss_dssp -CC-TTEEEEECTTTCCEEEEETTTCCEESSCC--
T ss_pred CCC-CCceEEEcCCCCCEEEEECCCCCEEecCCCC
Confidence 355 68999998 6999999999999999999975
No 101
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=96.50 E-value=0.001 Score=70.43 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 264 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~ 264 (857)
..++++|++..+++|++||.||.|+.|+|+.|.
T Consensus 10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~ 42 (261)
T 1eg3_A 10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPK 42 (261)
T ss_dssp TTCCTTEEEEECTTSCEEEEETTTTEEESSCHH
T ss_pred CCCCCCcceeECCCCCeEeecCCcccccCCCCc
Confidence 458889999999999999999999999999996
No 102
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0034 Score=51.93 Aligned_cols=60 Identities=22% Similarity=0.342 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccCCHHHHHHhcCCCccccCCCh--hHHHHHHHHHH
Q 003014 747 IKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR--KEREALWRRHA 814 (857)
Q Consensus 747 i~~L~ek~~~~Fr~LL~e~~~~~~~~~~~~~~~t~~~~w~e~k~~I~~D~Ry~~l~~--~eRe~lf~~~i 814 (857)
..++.+++++.|.-||..+... .+++....|+++++.|++-+.|++|.. +.++.||++|.
T Consensus 6 e~r~lEqKK~yF~llL~Rvy~~--------~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 6 ERRILEQKKHYFWLLLQRTYTK--------TGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCS--------SSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcc--------cCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 4566688999999999998532 245566799999999999999999965 35899998873
No 103
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.0079 Score=49.74 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhc--CC-CCC-CchHhhhcccccCchhhcccC-HHHHHHHHHHHH
Q 003014 454 KEECIIKFKEMLKER--GV-APF-SKWEKELPKIVFDPRFKAIQS-QSARRALFERYV 506 (857)
Q Consensus 454 kEEa~~aFk~mL~e~--~V-~~~-stWe~~~~~i~~DPRy~al~~-~~ERK~lFeeY~ 506 (857)
.|+.+.-|+-||... ++ ++. .+||.+...|.+-|.|++|.+ +.-+|++|++|.
T Consensus 10 lEqKK~yF~llL~Rvy~~~~k~kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~ 67 (69)
T 2kfd_A 10 LEQKKHYFWLLLQRTYTKTGKPKPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFK 67 (69)
T ss_dssp HHHHHHHHHHHHHHHSCSSSSCCCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcccCCCCCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcC
Confidence 466788899998886 23 344 499999999999999999955 489999999984
No 104
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=95.81 E-value=0.0045 Score=65.51 Aligned_cols=35 Identities=17% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhhH
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVT 319 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~~ 319 (857)
+++ .+|++..|.+|++||.|+.|++|+|+.|.-..
T Consensus 11 ~l~-~~we~~~~~~~~~y~~~h~~~tt~w~~p~~~~ 45 (261)
T 1eg3_A 11 SVQ-GPWERAISPNKVPYYINHETQTTCWDHPKMTE 45 (261)
T ss_dssp TCC-TTEEEEECTTSCEEEEETTTTEEESSCHHHHH
T ss_pred CCC-CCcceeECCCCCeEeecCCcccccCCCCchhh
Confidence 455 58999999999999999999999999998544
No 105
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=95.73 E-value=0.024 Score=47.35 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhhc---C-CHHHHHHHHHHHHHHhhh
Q 003014 520 AQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEA---L-DRKDRELLLNERVLPLKR 579 (857)
Q Consensus 520 ~~k~a~e~F~~LL~e~~~~i~~~t~W~e~~~k~~~Dprfka---l-~~~eRe~LF~Eyi~~Lkk 579 (857)
....|.+.|..|+...+ .+++..|..+.+++...|+|.. | +....++||+.||..|+.
T Consensus 7 ~l~satd~~e~LIr~~V--td~~~~W~~~skkL~~~pE~~~yv~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 7 QIATAKDKYEWLVSRIV--KNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp TTTHHHHHHHHHHHHHC--SSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hhHHHHhHHHHHHHhcCccHHHHHHHhChHHHHHHHHHHHHHhhc
Confidence 34567899999997664 5789999999999999999986 3 568889999999999975
No 106
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0032 Score=71.35 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEcCCCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++++|++..+++|++||.||.|+.|||+.|..
T Consensus 7 ~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 7 GPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCCCCCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 4589999999999999999999999999999974
No 107
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=94.87 E-value=0.021 Score=56.91 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEcC-CCCeeeecCCCCceeccCCCC
Q 003014 232 NEQLDAWTAHKTD-TGIVYYYNAVTGESTYEKPAG 265 (857)
Q Consensus 232 ~~~~~~W~e~~~~-~Gr~YYyN~~T~~StWekP~~ 265 (857)
..++.+|+...+. .|+.||||..|++++|++|..
T Consensus 6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~ 40 (177)
T 1yw5_A 6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYG 40 (177)
T ss_dssp CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTT
T ss_pred CCCCchHHHHhcccCCchhhhhHHHhhHhhcCccc
Confidence 4599999999986 799999999999999999974
No 108
>2k85_A Glucocorticoid receptor DNA-binding factor 1; FF domain, P190-A rhogap, protein phosphorylation, alternative splicing, anti-oncogene, cell cycle; NMR {Homo sapiens}
Probab=94.46 E-value=0.058 Score=45.04 Aligned_cols=57 Identities=23% Similarity=0.435 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHhhhcCchhhcccCCCC-HHHHHHHHHHHHHHHHH
Q 003014 695 AVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLD-SSDREKLFREHIKTLYE 752 (857)
Q Consensus 695 a~~~F~aLL~E~v~~p~ssW~E~~~~l~kD~r~ra~~~~Ls-~~drekLF~dhi~~L~e 752 (857)
|.+.|..|....|.|....|.-+...|...+.|... ..|. -....+||..||+.|++
T Consensus 11 atd~~e~LIr~~Vtd~~~~W~~~skkL~~~pE~~~y-v~L~G~~kaqrlF~rHi~kLk~ 68 (69)
T 2k85_A 11 AKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQDY-VYLEGTQKAKKLFLQHIHRLKH 68 (69)
T ss_dssp HHHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHHHH-HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHhcCccHHHH-HHHhChHHHHHHHHHHHHHhhc
Confidence 567799998888999999999999999999988642 1232 33468999999999964
No 109
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.017 Score=65.52 Aligned_cols=33 Identities=24% Similarity=0.629 Sum_probs=29.5
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 317 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e 317 (857)
++| .+|+...|.+|++||.|+.|++|+|+.|+-
T Consensus 8 ~lP-~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~ 40 (429)
T 3olm_A 8 PLP-SGWEMRLTNTARVYFVDHNTKTTTWDDPRL 40 (429)
T ss_dssp CCC-TTCCCCCSSCCCCCEEETTTTEEESSCTTS
T ss_pred CCC-CCceeEECCCCCeEEEeCCCcceeccCCCC
Confidence 355 689998899999999999999999999965
No 110
>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}
Probab=90.88 E-value=0.14 Score=50.75 Aligned_cols=35 Identities=26% Similarity=0.622 Sum_probs=29.4
Q ss_pred CCCCCCcEEEEc-CCCceEEEeCCCCeeeccCChhhH
Q 003014 284 HLTGTDWALVTT-NDGKKYYYNSKMKVSSWQIPSEVT 319 (857)
Q Consensus 284 ~~~~~~W~e~~t-~~Gr~YyyN~~T~~S~We~P~e~~ 319 (857)
.|| .+|..... ..|+.||||..|++++|+.|..+.
T Consensus 7 ~lp-~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~vs 42 (177)
T 1yw5_A 7 GLP-PNWTIRVSRSHNKEYFLNQSTNESSWDPPYGTD 42 (177)
T ss_dssp CCC-TTEEEEECSSTTCEEEEETTTCCEESSCCTTCC
T ss_pred CCC-chHHHHhcccCCchhhhhHHHhhHhhcCcccCC
Confidence 355 68998776 579999999999999999997654
No 111
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=81.61 E-value=1.5 Score=36.96 Aligned_cols=35 Identities=23% Similarity=0.515 Sum_probs=31.0
Q ss_pred CCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhhH
Q 003014 284 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVT 319 (857)
Q Consensus 284 ~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~e~~ 319 (857)
.+| .+|..++-..|-.-||+..|+..+|.+|=.|-
T Consensus 28 ~LP-eGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG 62 (79)
T 3le4_A 28 PLP-DGWIMTFHNSGVPVYLHRESRVVTWSRPYFLG 62 (79)
T ss_dssp CCC-TTEEEEECTTSSEEEEETTTTEEESSCCCCCT
T ss_pred cCC-CccEEEEecCCceEEEeccceEEeccCCeEec
Confidence 355 78999999999999999999999999997653
No 112
>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}
Probab=77.86 E-value=2.8 Score=35.38 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=34.9
Q ss_pred CCCCCCCCcEEEEcCCCCeeeecCCCCceeccCCCCCCC
Q 003014 230 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKG 268 (857)
Q Consensus 230 ~~~~~~~~W~e~~~~~Gr~YYyN~~T~~StWekP~~l~~ 268 (857)
....++.+|...+-..|-.-||+..|+.-||.+|-.+..
T Consensus 25 ~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~lG~ 63 (79)
T 3le4_A 25 PTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFLGT 63 (79)
T ss_dssp CCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCCTT
T ss_pred cCCcCCCccEEEEecCCceEEEeccceEEeccCCeEecC
Confidence 445699999999999999999999999999999987753
No 113
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=74.91 E-value=2.9 Score=28.42 Aligned_cols=14 Identities=43% Similarity=0.973 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCCC
Q 003014 60 PGLFVTPQTQAPPG 73 (857)
Q Consensus 60 ~~~~~~~~~~~~~~ 73 (857)
|++-|-+|++||||
T Consensus 12 pgvmgfpgppgppg 25 (31)
T 4gyx_A 12 PGVMGFPGPPGPPG 25 (31)
T ss_dssp CCCCCCCCCCCCCC
T ss_pred CccccCCCCCCCCC
Confidence 55555666666665
No 114
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=54.77 E-value=8.9 Score=25.53 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=3.6
Q ss_pred CCCCCCCCC
Q 003014 59 PPGLFVTPQ 67 (857)
Q Consensus 59 ~~~~~~~~~ 67 (857)
||.++|..|
T Consensus 4 PPplPg~~g 12 (26)
T 2v8f_C 4 PPPLPGVAS 12 (26)
T ss_pred CCCCCCCCC
Confidence 334444444
No 115
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=46.45 E-value=12 Score=25.01 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 003014 54 PSFSTPPGLFVTPQTQAPPG 73 (857)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~ 73 (857)
|+.|..||+.|.+.++..||
T Consensus 2 PPPPplPg~~giPpPpplPg 21 (26)
T 2v8f_C 2 PPPPPLPGVASIPPPPPLPG 21 (26)
T ss_pred cCCCCCCCCCCCCCCCCCCC
Confidence 34456667777777776666
No 116
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=35.08 E-value=35 Score=35.97 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=37.7
Q ss_pred CCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q 003014 244 DTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 315 (857)
Q Consensus 244 ~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P 315 (857)
.+|.+|.||..|++..|..+...... ...|. ...+-.-+.+.+|.+|.||..|++..|...
T Consensus 285 ~~g~l~~~d~~tG~~~w~~~~~~~~~------~~~~~-----~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 285 QNDRVMALTIDGGVTLWTQSDLLHRL------LTSPV-----LYNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp TTCCEEEEETTTCCEEEEECTTTTSC------CCCCE-----EETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEeecccCCCc------ccCCE-----EECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 46777888888888888765211000 00111 112333345678999999999999999753
No 117
>1w8x_P Protein P16, protein S, GPS; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=34.41 E-value=21 Score=30.82 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003014 146 LPFLPYPAAYPSPFPLPAHGMPNPSVSQIDA 176 (857)
Q Consensus 146 pp~~~~~~~~~g~~~~p~~g~~~p~~~~p~~ 176 (857)
||+|.|..++.|+.-.|..|--.|+|..|+-
T Consensus 38 ppymtynqpqagsvtlpvagytspsptlpnr 68 (117)
T 1w8x_P 38 PPYMTYNQPQAGSVTLPVAGYTSPSPTLPNR 68 (117)
T ss_dssp CCTTCSSCCCSCSCCCSCC------------
T ss_pred CCcccccCCCCcceeeeecccCCCCCCCCCC
Confidence 4556677778888888999987777766553
No 118
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=33.87 E-value=6.2e+02 Score=29.40 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003014 738 DREKLFREHIKTLYERCAHDFRGLLAEV 765 (857)
Q Consensus 738 drekLF~dhi~~L~ek~~~~Fr~LL~e~ 765 (857)
+.++-|.+||..|.++...+-+.+|.+.
T Consensus 519 ~~~~~~~e~~~ql~~kme~~~~~~~~e~ 546 (592)
T 1f5n_A 519 QKERSYQEHLKQLTEKMENDRVQLLKEQ 546 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888877777666666664
No 119
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=32.92 E-value=28 Score=36.77 Aligned_cols=62 Identities=16% Similarity=0.336 Sum_probs=42.8
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCccccCCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 003014 243 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 316 (857)
Q Consensus 243 ~~~Gr~YYyN~~T~~StWekP~~l~~~~~~~~~qp~P~~~~~~~~~~W~e~~t~~Gr~YyyN~~T~~S~We~P~ 316 (857)
+.+|.+|.||..|++..|..+..-.. ...|. + ..+-.-+.+.+|.+|.||..|++..|....
T Consensus 110 ~~~g~l~a~d~~tG~~~W~~~~~~~~-------~~~p~----~-~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 110 SEKAQVYALNTSDGTVAWQTKVAGEA-------LSRPV----V-SDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ETTSEEEEEETTTCCEEEEEECSSCC-------CSCCE----E-ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cCCCEEEEEECCCCCEEEEEeCCCce-------EcCCE----E-ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 45799999999999999987643110 01111 1 123233456789999999999999998654
No 120
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=28.62 E-value=16 Score=46.06 Aligned_cols=25 Identities=28% Similarity=0.816 Sum_probs=22.3
Q ss_pred CCCceEEEeCCCCeeeccCChhhHH
Q 003014 296 NDGKKYYYNSKMKVSSWQIPSEVTE 320 (857)
Q Consensus 296 ~~Gr~YyyN~~T~~S~We~P~e~~~ 320 (857)
...|.|+||..-|+|+|+.|..+..
T Consensus 943 ~~eKLYH~N~~GGtsTW~LP~~w~~ 967 (1531)
T 3ecq_A 943 DKEKMYYFNTQAGATTWTLPSDWAK 967 (1531)
T ss_dssp GGCEEEEEESSCSEEEEECCHHHHT
T ss_pred CccceEEEcCCCCeEeeECCCcccC
Confidence 3569999999999999999999875
No 121
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=26.78 E-value=4.5e+02 Score=28.05 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=23.3
Q ss_pred ChHHHHHHhccCccccccccccHHHHHHHHHHHHHHHHHH
Q 003014 611 RWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEE 650 (857)
Q Consensus 611 ~W~ev~~~L~~DpRy~~l~~~dr~~lFeeyi~~L~~~e~e 650 (857)
.+.++..++..||. .+...+--.+|.+|+..+++..++
T Consensus 274 ~~~~l~~yfged~~--~~~~~~fF~~~~~F~~~f~~a~~e 311 (340)
T 1v9d_A 274 LYKELGDYFVFDPK--KLSVEEFFMDLHNFRNMFLQAVKE 311 (340)
T ss_dssp HHHHHHHHTTCCTT--TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666664 233345556777888888776554
No 122
>1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP}
Probab=25.95 E-value=19 Score=28.60 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCCchHhhhccc
Q 003014 453 TKEECIIKFKEMLKERGVAPFSKWEKELPKI 483 (857)
Q Consensus 453 tkEEa~~aFk~mL~e~~V~~~stWe~~~~~i 483 (857)
.-|++++.|++-|++.+|+.-|+++.+-+.|
T Consensus 22 ~~e~a~n~F~Qy~ndng~dg~w~yd~atktf 52 (56)
T 1zxh_A 22 DAETARNAFIQSLKDDGVQGVWTYDDATKTF 52 (56)
T ss_dssp SHHHHHHHHHHHHHHHHTTSEECCCTTTCEE
T ss_pred hHHHHHHHHHHHHhcCCccceeecccceeeE
Confidence 5688999999999999999989888776544
No 123
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=25.45 E-value=50 Score=24.89 Aligned_cols=34 Identities=35% Similarity=0.366 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 003014 734 LDSSDREKLFREHIKTLY---ERCAHDFRGLLAEVIT 767 (857)
Q Consensus 734 Ls~~drekLF~dhi~~L~---ek~~~~Fr~LL~e~~~ 767 (857)
++..|-..||.++++.-. ++...-|-+||.++..
T Consensus 4 ~~kld~felfkey~k~r~~~he~l~k~~~ell~evkk 40 (50)
T 3qf7_D 4 LDKLDYFELFKEYLKKREENHEKLLKILDELLDEVKK 40 (50)
T ss_dssp ---CCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345566678888887653 3455556666666643
No 124
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=23.40 E-value=8.1e+02 Score=27.35 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=25.1
Q ss_pred ChHHHHHHhccCccccccccccHHHHHHHHHHHHHHHHHH
Q 003014 611 RWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEE 650 (857)
Q Consensus 611 ~W~ev~~~L~~DpRy~~l~~~dr~~lFeeyi~~L~~~e~e 650 (857)
.+.++..++..||. .+...+--.+|.+|+..++++.++
T Consensus 345 ~~~~l~~yFgedp~--~~~~~eFF~~~~~F~~~fkkA~~e 382 (457)
T 3obv_E 345 LYKELGDYFVFDPK--KLSVEEFFMDLHNFRNMFLQAVKE 382 (457)
T ss_dssp HHHHHHHHTTCCTT--TSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777774 233345666777888888876554
No 125
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=21.67 E-value=25 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.587 Sum_probs=22.4
Q ss_pred CCCceEEEeCCCCeeeccCChhhHH
Q 003014 296 NDGKKYYYNSKMKVSSWQIPSEVTE 320 (857)
Q Consensus 296 ~~Gr~YyyN~~T~~S~We~P~e~~~ 320 (857)
...|.|+||..-|+|+|+.|..+..
T Consensus 705 ~~~KlYh~N~~gG~stW~Lp~~w~~ 729 (1376)
T 2zxq_A 705 SEQKLYHWNTKGGTTTWTLPDSWKN 729 (1376)
T ss_dssp GGCEEEEEESSCEEEEEECCGGGTT
T ss_pred CcceeEEEeCCCCeeeEECCcccCC
Confidence 3579999999999999999999875
Done!