BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003016
         (857 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ESB|A Chain A, Crystal Structure Of Padr-Like Transcriptional Regulator
           (Bc4206) From Bacillus Cereus Strain Atcc 14579
          Length = 115

 Score = 30.4 bits (67), Expect = 4.5,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)

Query: 489 FEETTRANSSGYTFLS-GDGAPL---KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544
           +E +T+ N  G+TF+S G   PL      E      L+AS+   + +Y+    KG+    
Sbjct: 26  YELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLE--- 82

Query: 545 CQLDQTKHAWLLVEAS 560
            QL++ K +W +V  +
Sbjct: 83  -QLEEFKQSWGMVSTT 97


>pdb|4A0S|A Chain A, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
           In Complex With Nadp And 2-Octenoyl-Coa
 pdb|4A0S|B Chain B, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
           In Complex With Nadp And 2-Octenoyl-Coa
 pdb|4A0S|C Chain C, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
           In Complex With Nadp And 2-Octenoyl-Coa
 pdb|4A0S|D Chain D, Structure Of The 2-Octenoyl-Coa Carboxylase Reductase Cinf
           In Complex With Nadp And 2-Octenoyl-Coa
 pdb|4A10|A Chain A, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
           From Streptomyces Sp.
 pdb|4A10|B Chain B, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
           From Streptomyces Sp.
 pdb|4A10|C Chain C, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
           From Streptomyces Sp.
 pdb|4A10|D Chain D, Apo-Structure Of 2-Octenoyl-Coa Carboxylase Reductase Cinf
           From Streptomyces Sp
          Length = 447

 Score = 30.0 bits (66), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKL 286
           +R+++ KL  I+G  G  HE  +  N + E   + P ++A + +A          E  ++
Sbjct: 347 NRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVVPAMSAVYPLAEA-------AEACRV 399

Query: 287 IERMRQKPSKRIKNMHRKNWDPVLEPDL 314
           ++  RQ     +  M  +    V +PDL
Sbjct: 400 VQTSRQVGKVAVLCMAPEQGLGVTDPDL 427


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,841,201
Number of Sequences: 62578
Number of extensions: 938699
Number of successful extensions: 2507
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2504
Number of HSP's gapped (non-prelim): 6
length of query: 857
length of database: 14,973,337
effective HSP length: 107
effective length of query: 750
effective length of database: 8,277,491
effective search space: 6208118250
effective search space used: 6208118250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)