BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003016
(857 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570,
chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2
Length = 798
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/698 (59%), Positives = 525/698 (75%), Gaps = 43/698 (6%)
Query: 1 MEKIKQKLLKHGVFPTPKILRSIRKKEIQKHNRKQAK-IQSQAQL-SPSQQQALAEEQHF 58
MEKIK++LLK+GV PTPKIL ++RKKEIQKHNR+ + +S+A++ + +Q+Q++ EE F
Sbjct: 23 MEKIKRRLLKYGVDPTPKILNNLRKKEIQKHNRRTKRETESEAEVYTEAQKQSMEEEARF 82
Query: 59 QTLKREFKMFRRAVAAKSGDP---LVGKPWERIERLKFRQLAS--ESKEFAGDNLKRENL 113
QTL+RE+K F R+++ K G +VG PWE IER+K ++L S +E + LK+ENL
Sbjct: 83 QTLRREYKQFTRSISGKRGGDVGLMVGNPWEGIERVKLKELVSGVRREEVSAGELKKENL 142
Query: 114 RELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRVLVDRLSEREMTAK 173
+ELK++ EKDL WVLDDDV + K E+ P KRWR+E EA+RVLVDRLS RE+ K
Sbjct: 143 KELKKILEKDLRWVLDDDVDVEEFDLDK--EFDPAKRWRNEGEAVRVLVDRLSGREINEK 200
Query: 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233
+WKFVR+MNQSGL FTE QMLK++ LG K SW+QA +V+ WVY K ++ L+SRFVYTK
Sbjct: 201 HWKFVRMMNQSGLQFTEDQMLKIVDRLGRKQSWKQASAVVHWVYSDKKRKHLRSRFVYTK 260
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL++LG A RP EAL+IFN ML D LYPD+AAYH +AVTLGQ GLLKEL+K+IERMRQK
Sbjct: 261 LLSVLGFARRPQEALQIFNQMLGDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQK 320
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
P+K KN+ +KNWDPVLEPDLVVYNA+LNACVP+ QWK V WVF +LRK+GL+P+ ATYG
Sbjct: 321 PTKLTKNLRQKNWDPVLEPDLVVYNAILNACVPTLQWKAVSWVFVELRKNGLRPNGATYG 380
Query: 354 LAMES-------------YRR----------CLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
LAME +R+ KVLVRA W EGKI EAV AVR+MEQ+
Sbjct: 381 LAMEVMLESGKFDRVHDFFRKMKSSGEAPKAITYKVLVRALWREGKIEEAVEAVRDMEQK 440
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450
GV+GT SVYYELACCLCNNGRW DAML V ++K L + +PLEITFTGLI +S++GGH+DD
Sbjct: 441 GVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDD 500
Query: 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510
C++IFQ+MKD C+PNIGT N MLKVY RNDMFS+AKELFEE +S L
Sbjct: 501 CMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEE----------IVSRKETHL 550
Query: 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEH 570
P+EYTYS MLEASA + QWEYFE+VY+ M LSG Q+DQTKHA +L+EASRAGK LLEH
Sbjct: 551 VPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLEH 610
Query: 571 AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 630
AFD++LE GEIPHPLFFTE+L A + ++++A+ LIN +A A F I+E +WT+LFE ++
Sbjct: 611 AFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALASFQISEEEWTDLFEEHQ 670
Query: 631 DRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668
D +++D L KL + L C+ SE TVSNLS++L + C
Sbjct: 671 DWLTQDNLHKLSDHLIECDYV-SEPTVSNLSKSLKSRC 707
>sp|Q9SA76|PPR64_ARATH Pentatricopeptide repeat-containing protein At1g30610,
chloroplastic OS=Arabidopsis thaliana GN=EMB2279 PE=2
SV=1
Length = 1006
Score = 333 bits (855), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 277/502 (55%), Gaps = 60/502 (11%)
Query: 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVY 217
I L L+ ++ W+F + + + + +T+ +++L+ LG G+WR+ + V++W+
Sbjct: 437 IEKLAKVLNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWRRVLQVIEWLQ 496
Query: 218 GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277
+ K R +YT L +LGK+ RP EAL +F+ ML + YPD+ AY S+AVTLGQ
Sbjct: 497 RQDRYKSNKIRIIYTTALNVLGKSRRPVEALNVFHAMLLQISSYPDMVAYRSIAVTLGQA 556
Query: 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337
G +KEL +I+ MR P K+ K + WDP LEPD+VVYNAVLNACV QW+G FWV
Sbjct: 557 GHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAVLNACVQRKQWEGAFWVL 616
Query: 338 KQLRKSGLKPSAATYGLAMESYRRC----------------------LLKVLVRAFWEEG 375
+QL++ G KPS TYGL ME C +VLV W+EG
Sbjct: 617 QQLKQRGQKPSPVTYGLIMEVMLACEKYNLVHEFFRKMQKSSIPNALAYRVLVNTLWKEG 676
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM--------LVVEKIKSLRH 427
K +EAV V +ME RG+VG+A++YY+LA CLC+ GR + + +V++ I++L +
Sbjct: 677 KSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEGLNMVNFVNPVVLKLIENLIY 736
Query: 428 -------------------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 468
+KPL +T+TGLI + +D G+I + IF MK C PN+ T
Sbjct: 737 KADLVHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLVT 796
Query: 469 VNAMLKVYSRNDMFSKAKELFEETTR-----ANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
N MLK Y + +F +A+ELF++ + NSS + + + PD YT+++ML+
Sbjct: 797 CNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFE------SRVLPDTYTFNTMLDT 850
Query: 524 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583
A +W+ F Y Y+ M G + +H +++EASRAGK ++E ++ + + IP
Sbjct: 851 CAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGKEEVMEATWEHMRRSNRIPP 910
Query: 584 PLFFTEMLIQAIVQSNYEKAVA 605
E + + + ++ A++
Sbjct: 911 SPLIKERFFRKLEKGDHISAIS 932
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 96/419 (22%), Positives = 169/419 (40%), Gaps = 55/419 (13%)
Query: 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248
T ++L LKGLG + A+ DW KD + + V ++++LGK GR A
Sbjct: 134 TSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAA 193
Query: 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308
+FN + ED D+ +Y S+ G +E V + ++M + K
Sbjct: 194 NMFNGLQED-GFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCK------------ 240
Query: 309 VLEPDLVVYNAVLNACVP-SHQWKGVFWVFKQLRKSGLKPSAATYGLAME---------- 357
P L+ YN +LN W + + ++++ G+ P A TY +
Sbjct: 241 ---PTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 358 -------------SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 404
SY + L+ + + + EA+ + M G + Y L
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS 357
Query: 405 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCE 463
+G +AM + ++ + +KP T+T L+ G ++ +SIF+ M++ C+
Sbjct: 358 AYARDGMLDEAMELKNQMAE-KGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCK 416
Query: 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
PNI T NA +K+Y F++ ++F+E N G L PD T++++L
Sbjct: 417 PNICTFNAFIKMYGNRGKFTEMMKIFDEI---NVCG----------LSPDIVTWNTLLAV 463
Query: 524 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
V+K M +G ++ L+ SR G + +L+AG P
Sbjct: 464 FGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/403 (21%), Positives = 153/403 (37%), Gaps = 66/403 (16%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL G G AMS+ + + K ++ + + + + G G+ E ++IF+ +
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICT---FNAFIKMYGNRGKFTEMMKIFD-EI 445
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---PSKRIKN------------ 300
C L PDI ++++ GQ G+ E+ + + M++ P + N
Sbjct: 446 NVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSF 505
Query: 301 -----MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY--- 352
++R+ D + PDL YN VL A W+ V ++ KP+ TY
Sbjct: 506 EQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSL 565
Query: 353 --------------GLAMESY------RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392
LA E Y R LLK LV + + EA A +++RG
Sbjct: 566 LHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGF 625
Query: 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII---SSMDGGHID 449
+ + A V++ +K R P T+ L+ S D G +
Sbjct: 626 SPDITTLNSMVSIYGRRQMVAKANGVLDYMKE-RGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509
+ + + + +P+I + N ++ Y RN A +F E +
Sbjct: 685 EILR--EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSG------------- 729
Query: 510 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 552
+ PD TY++ + + A +E V + M GC+ +Q +
Sbjct: 730 IVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTY 772
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 115/254 (45%), Gaps = 28/254 (11%)
Query: 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422
++ +++ +EG+++ A +++ G Y L N+GR+++A+ V +K+
Sbjct: 175 VVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKM 234
Query: 423 KSLRHSKPLEITFTGLI-ISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRND 480
+ KP IT+ ++ + G + S+ + MK D P+ T N ++ R
Sbjct: 235 EE-DGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGS 293
Query: 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGM 540
+ +A ++FEE A G+++ D+ TY+++L+ +H+ + V M
Sbjct: 294 LHQEAAQVFEEMKAA---GFSY----------DKVTYNALLDVYGKSHRPKEAMKVLNEM 340
Query: 541 ALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF---DSLLEAGEIPHPLFFTEMLIQAIVQ 597
L+G + L+ +R G +L+ A + + E G P +T +L
Sbjct: 341 VLNGFSPSIVTYNSLISAYARDG---MLDEAMELKNQMAEKGTKPDVFTYTTLL------ 391
Query: 598 SNYEKAVALINAMA 611
S +E+A + +AM+
Sbjct: 392 SGFERAGKVESAMS 405
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 33/217 (15%)
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
L+ + K EA R F+ L++ PDI +S+ G+ ++ + +++ M+++
Sbjct: 600 LVLVCSKCDLLPEAERAFS-ELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKER 658
Query: 294 ---PSKRIKN----MHRKNWD-------------PVLEPDLVVYNAVLNACVPSHQWKGV 333
PS N MH ++ D ++PD++ YN V+ A + + +
Sbjct: 659 GFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV 393
+F ++R SG+ P TY + SY + EA+ VR M + G
Sbjct: 719 SRIFSEMRNSGIVPDVITYNTFIGSYA------------ADSMFEEAIGVVRYMIKHGCR 766
Query: 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ Y + C R +A L VE +++L P
Sbjct: 767 PNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAP 803
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/490 (21%), Positives = 191/490 (38%), Gaps = 88/490 (17%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L++G G R+A +L+ + G D+ Y +++ KAG + AL + + M
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDV---ITYNVMISGYCKAGEINNALSVLDRM- 198
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
++ PD+ Y+++ +L G LK+ +++++RM Q+ PD++
Sbjct: 199 ---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCY---------------PDVI 240
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y ++ A + ++R G P TY VLV +EG
Sbjct: 241 TYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY------------NVLVNGICKEG 288
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLVVEKIKSLRHSKPLEIT 434
+++EA+ + +M G + + +C+ GRW DA L+ + ++ + P +T
Sbjct: 289 RLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLR--KGFSPSVVT 346
Query: 435 FTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
F LI G + I I + M H C+PN + N +L + + +A E E
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE--- 403
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE-------------------YFE 534
R S G PD TY++ML A + E +
Sbjct: 404 RMVSRG----------CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 535 YVYKGMALSG----------------CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578
V G+A +G + D ++ L+ SR GK F
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERM 513
Query: 579 GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES-NEDRISRDK 637
G P+ + F +++ ++A+ + M E +T L E + ++++
Sbjct: 514 GIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Query: 638 LEKLLNALCN 647
LE LLN LCN
Sbjct: 574 LE-LLNELCN 582
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/409 (19%), Positives = 164/409 (40%), Gaps = 45/409 (11%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PD ++++ L G + E V L++RM + +PD+V YN+++
Sbjct: 156 PDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC---------------QPDVVTYNSIV 200
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381
N S + +++ + +K TY ++S R +G I+ A+
Sbjct: 201 NGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCR------------DGCIDAAI 248
Query: 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441
+ + ME +G+ + Y L LC G+W D L+++ + S R P ITF L+
Sbjct: 249 SLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS-REIVPNVITFNVLLDV 307
Query: 442 SMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 500
+ G + + +++ M PNI T N ++ Y + S+A + + R S
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS-- 365
Query: 501 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560
PD T++S+++ + + V++ ++ G + ++ L+
Sbjct: 366 -----------PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414
Query: 561 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITER 620
++GK L E F ++ G +P + + +L EKA+ + + + +
Sbjct: 415 QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 474
Query: 621 QWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCR 669
+T + E K+E N C+ + V + + LC+
Sbjct: 475 MYTTIIEG---MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCK 520
Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 59/313 (18%), Positives = 118/313 (37%), Gaps = 60/313 (19%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR------FVYTKLLAILGKAGRPHEALR 249
L++GL G W +L +D+ SR + LL + K G+ EA
Sbjct: 269 LVRGLCKAGKWNDGALLL---------KDMVSREIVPNVITFNVLLDVFVKEGKLQEANE 319
Query: 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM-RQKPS------------- 295
++ M+ + P+I Y+++ L E +++ M R K S
Sbjct: 320 LYKEMITR-GISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGY 378
Query: 296 ---KRIKN---MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
KR+ + + R L + V Y+ ++ S + K +F+++ G+ P
Sbjct: 379 CMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDV 438
Query: 350 ATYGL-------------AMESYRR----------CLLKVLVRAFWEEGKINEAVAAVRN 386
TYG+ A+E + + ++ + GK+ +A +
Sbjct: 439 MTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCS 498
Query: 387 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446
+ +GV Y + LC G +A +++ K++ + P + T+ LI + + G
Sbjct: 499 LPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE-DGNAPNDCTYNTLIRAHLRDG 557
Query: 447 HIDDCISIFQHMK 459
+ + + MK
Sbjct: 558 DLTASAKLIEEMK 570
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 93/400 (23%), Positives = 173/400 (43%), Gaps = 71/400 (17%)
Query: 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKEL 283
D++SR TKL+ L + GRP EA IFN ++E+ + P + Y ++ L + L
Sbjct: 318 DVRSR---TKLMNGLIERGRPQEAHSIFNTLIEEGH-KPSLITYTTLVTALTRQKHFHSL 373
Query: 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343
+ LI ++ + L+PD +++NA++NA S +F+++++S
Sbjct: 374 LSLISKVEKNG---------------LKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418
Query: 344 GLKPSAATYGLAMESY--------------------------RRCLLKVLVRAFWEEGKI 377
G KP+A+T+ ++ Y R C +LV+A+ + KI
Sbjct: 419 GCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTC--NILVQAWCNQRKI 476
Query: 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS--KPLEITF 435
EA V M+ GV + LA G A ++ I + H+ KP T
Sbjct: 477 EEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNKVKPNVRTC 534
Query: 436 TGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVY-SRNDM--FSKAKELFEE 491
++ + G +++ + F MK+ PN+ N+++K + + NDM + +L EE
Sbjct: 535 GTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEE 594
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
+KPD T+S+++ A ++ + E +Y M G D
Sbjct: 595 FG----------------VKPDVVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHA 638
Query: 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+ L +RAG+ E + + + G P+ + +T+++
Sbjct: 639 FSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQII 678
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 186/432 (43%), Gaps = 64/432 (14%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
VLV+ + E+ +T + F + +S L+ T+ ++ L+KGL D G W +A+ + +W+
Sbjct: 110 VLVNSIVEQPLTGLSRFFDSV--KSELLRTD--LVSLVKGLDDSGHWERAVFLFEWLVLS 165
Query: 220 KDKRDLK-SRFVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQV 277
+ LK V + ILG+ + A ++ + + L++ L D+ AY ++ +
Sbjct: 166 SNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLL--DVRAYTTILHAYSRT 223
Query: 278 GLLKELVKLIERMRQ-KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-SHQWKGVFW 335
G ++ + L ERM++ PS P LV YN +L+ W+ +
Sbjct: 224 GKYEKAIDLFERMKEMGPS----------------PTLVTYNVILDVFGKMGRSWRKILG 267
Query: 336 VFKQLRKSGLK----------PSAATYGLAMES------YRRC-------LLKVLVRAFW 372
V ++R GLK + A GL E+ + C L++ F
Sbjct: 268 VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFG 327
Query: 373 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432
+ G EA++ ++ ME+ + Y EL G ++A V+E + + P
Sbjct: 328 KAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTK-KGVMPNA 386
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
IT+T +I + G D+ + +F MK+ C PN T NA+L + + S++ E+ +
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKK---SRSNEMIKM 443
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
S+G + P+ T+++ML ++ V++ M G + D+
Sbjct: 444 LCDMKSNGCS----------PNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDT 493
Query: 552 HAWLLVEASRAG 563
L+ R G
Sbjct: 494 FNTLISAYGRCG 505
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 101/459 (22%), Positives = 184/459 (40%), Gaps = 63/459 (13%)
Query: 181 MNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240
M S + T +L + +G SWR+ + VLD + K D F + +L+ +
Sbjct: 239 MGPSPTLVTYNVILDVFGKMGR--SWRKILGVLDEMRSKGLKFD---EFTCSTVLSACAR 293
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300
G EA F L+ C P Y+++ G+ G+ E + +++ M +
Sbjct: 294 EGLLREAKEFFA-ELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEE-------- 344
Query: 301 MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYR 360
N P D V YN ++ A V + K V + + K G+ P+A TY
Sbjct: 345 ----NSCPA---DSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITY-------- 389
Query: 361 RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 420
++ A+ + GK +EA+ +M++ G V Y + L R + + ++
Sbjct: 390 ----TTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLC 445
Query: 421 KIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC--EPNIGTVNAMLKVYSR 478
+KS P T+ ++ + G +F+ MK C EP+ T N ++ Y R
Sbjct: 446 DMKS-NGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKS-CGFEPDRDTFNTLISAYGR 503
Query: 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538
A +++ E TRA + TY+++L A A W E V
Sbjct: 504 CGSEVDASKMYGEMTRAGFNACV-------------TTYNALLNALARKGDWRSGENVIS 550
Query: 539 GMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQS 598
M G + +T ++ +L ++ G +L ++ ++ G+I F + ML++ ++ +
Sbjct: 551 DMKSKGFKPTETSYSLMLQCYAKGGN-YLGIERIENRIKEGQI----FPSWMLLRTLLLA 605
Query: 599 NY--------EKAVALINAMAYAPFHITERQWTELFESN 629
N+ E+A L Y P + +F N
Sbjct: 606 NFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 644
Score = 67.0 bits (162), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 81/409 (19%), Positives = 162/409 (39%), Gaps = 46/409 (11%)
Query: 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD 263
G ++A V++ + K + + YT ++ GKAG+ EAL++F M ++ P+
Sbjct: 365 GFSKEAAGVIEM---MTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSM-KEAGCVPN 420
Query: 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA 323
Y++V LG+ E++K++ M+ P+ +N +L
Sbjct: 421 TCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGC---------------SPNRATWNTMLAL 465
Query: 324 CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383
C K V VF++++ G +P T+ + +Y RC +V + E
Sbjct: 466 CGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGE--------- 516
Query: 384 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443
M + G + Y L L G W+ V+ +KS + KP E +++ ++
Sbjct: 517 ---MTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKS-KGFKPTETSYSLMLQCYA 572
Query: 444 DGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 502
GG+ I +K+ P+ + +L + + ++ F T GY
Sbjct: 573 KGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAF---TLFKKHGY-- 627
Query: 503 LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 562
KPD ++SML + ++ E + + + G D + L+ R
Sbjct: 628 --------KPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRR 679
Query: 563 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611
G+C E +L ++ P + + ++ + ++AV +++ M
Sbjct: 680 GECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/435 (17%), Positives = 164/435 (37%), Gaps = 70/435 (16%)
Query: 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237
+ +M + G+M ++ G G +A+ + Y +K+ + + Y +L++
Sbjct: 374 IEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLF---YSMKEAGCVPNTCTYNAVLSL 430
Query: 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ----- 292
LGK R +E +++ M + P+ A ++++ G G+ K + ++ M+
Sbjct: 431 LGKKSRSNEMIKMLCDMKSN-GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEP 489
Query: 293 -------------------KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGV 333
SK M R ++ + YNA+LNA W+
Sbjct: 490 DRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV----TTYNALLNALARKGDWRSG 545
Query: 334 FWVFKQLRKSGLKPSAATYGLAMESYRR-----------------------CLLKVLVRA 370
V ++ G KP+ +Y L ++ Y + LL+ L+ A
Sbjct: 546 ENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLA 605
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
++ + + A ++ G ++ + N + A ++E I+ S
Sbjct: 606 NFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPD 665
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 489
L +T+ L+ + G I + + K +P++ + N ++K + R + +A +
Sbjct: 666 L-VTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRML 724
Query: 490 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549
E T ++P +TY++ + + E V + MA + C+ ++
Sbjct: 725 SEMTERG-------------IRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNE 771
Query: 550 TKHAWLLVEASRAGK 564
++ RAGK
Sbjct: 772 LTFKMVVDGYCRAGK 786
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 119/295 (40%), Gaps = 35/295 (11%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL L KG WR +V+ +K K + Y+ +L K G RI N +
Sbjct: 532 LLNALARKGDWRSGENVIS---DMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ-KPSKRIKNMHRKNWDPVLEPDL 314
E ++P LL+ L+ + R S+R + +K+ +PD+
Sbjct: 589 EG-QIFPSWM-------------LLRTLLLANFKCRALAGSERAFTLFKKHG---YKPDM 631
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE 374
V++N++L+ ++ + + + +R+ GL P TY M+ Y R
Sbjct: 632 VIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVR------------R 679
Query: 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434
G+ +A ++ +E+ + Y + C G Q+A+ ++ ++ R +P T
Sbjct: 680 GECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTE-RGIRPCIFT 738
Query: 435 FTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488
+ + G + + + M K+ C PN T ++ Y R +S+A +
Sbjct: 739 YNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDF 793
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 141/330 (42%), Gaps = 48/330 (14%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GL + G W +L + G + + ++ L+ + K G+ EA ++N M+
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIG---RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI 342
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ PD Y+S+ + L E ++ + M K EPD+V
Sbjct: 343 TR-GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGC---------------EPDIV 386
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y+ ++N+ + + +F+++ GL P+ TY LV F + G
Sbjct: 387 TYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITY------------NTLVLGFCQSG 434
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
K+N A + M RGV + Y L LC+NG A+ + EK++ R + L I
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT--LGIGI 492
Query: 436 TGLIISSM-DGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
+II M + +DD S+F + D +P++ T N M+ + S+A LF +
Sbjct: 493 YNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRK-- 550
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
+ DG PD++TY+ ++ A
Sbjct: 551 ---------MKEDGC--TPDDFTYNILIRA 569
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/370 (19%), Positives = 151/370 (40%), Gaps = 43/370 (11%)
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301
GR EA+ + + M+E PD+ ++ L G + E + LI+RM +
Sbjct: 154 GRVSEAVALVDRMVE-MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG------- 205
Query: 302 HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRR 361
+PD V Y VLN S +F+++ + +K S Y + ++S
Sbjct: 206 --------FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDS--- 254
Query: 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEK 421
++G ++A++ ME +G+ Y L LCN+G+W D ++ +
Sbjct: 255 ---------LCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLRE 305
Query: 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRND 480
+ R+ P +TF+ LI + G + + ++ M P+ T N+++ + + +
Sbjct: 306 MIG-RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364
Query: 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGM 540
+A ++F+ +PD TYS ++ + A + + +++ +
Sbjct: 365 CLHEANQMFDLMVSKGC-------------EPDIVTYSILINSYCKAKRVDDGMRLFREI 411
Query: 541 ALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNY 600
+ G + + L++ ++GK + + F ++ G P + + +L
Sbjct: 412 SSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471
Query: 601 EKAVALINAM 610
KA+ + M
Sbjct: 472 NKALEIFEKM 481
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/398 (18%), Positives = 156/398 (39%), Gaps = 48/398 (12%)
Query: 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220
+++RL + +A R M + + + Q ++ L GS+ A+S+ + +
Sbjct: 216 VLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEM---- 271
Query: 221 DKRDLKSRFV-YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
+ + +K+ V Y+ L+ L G+ + ++ M+ N+ PD+ + ++ + G
Sbjct: 272 EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR-NIIPDVVTFSALIDVFVKEGK 330
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
L E +L M + + PD + YN++++ + +F
Sbjct: 331 LLEAKELYNEMITRG---------------IAPDTITYNSLIDGFCKENCLHEANQMFDL 375
Query: 340 LRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399
+ G +P TY +L+ ++ + ++++ + R + +G++ Y
Sbjct: 376 MVSKGCEPDIVTY------------SILINSYCKAKRVDDGMRLFREISSKGLIPNTITY 423
Query: 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM- 458
L C +G+ A + +++ S R P +T+ L+ D G ++ + IF+ M
Sbjct: 424 NTLVLGFCQSGKLNAAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 482
Query: 459 KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518
K IG N ++ A LF LS G +KPD TY+
Sbjct: 483 KSRMTLGIGIYNIIIHGMCNASKVDDAWSLF-----------CSLSDKG--VKPDVVTYN 529
Query: 519 SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556
M+ + +++ M GC D + L+
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 131/320 (40%), Gaps = 48/320 (15%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVR 369
+E D+ ++N + F V + K G +P T+ LV
Sbjct: 101 IEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITF------------STLVN 148
Query: 370 AFWEEGKINEAVAAVR---NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426
F EG+++EAVA V M+QR + T S L LC GR +A+++++++
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVST---LINGLCLKGRVSEALVLIDRMVEYG 205
Query: 427 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKA 485
+P E+T+ ++ G+ + +F+ M++ + + ++ + ++ ++ F A
Sbjct: 206 F-QPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDA 264
Query: 486 KELFEET----TRANSSGYTFLSG---------DGAPL---------KPDEYTYSSMLEA 523
LF E +A+ Y+ L G DGA + PD T+S++++
Sbjct: 265 LSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDV 324
Query: 524 SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583
+ + +Y M G D + L+ + H FD ++ G P
Sbjct: 325 FVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEP- 383
Query: 584 PLFFTEMLIQAIVQSNYEKA 603
+++ +I+ ++Y KA
Sbjct: 384 -----DIVTYSILINSYCKA 398
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 148/348 (42%), Gaps = 51/348 (14%)
Query: 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299
K GR +AL M +PD ++++ L + G +K +++++ M Q+
Sbjct: 271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE------ 324
Query: 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359
+DP D+ YN+V++ + K V Q+ P+ TY
Sbjct: 325 -----GYDP----DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY------- 368
Query: 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419
L+ +E ++ EA R + +G++ + L LC + AM +
Sbjct: 369 -----NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423
Query: 420 EKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSR 478
E+++S + +P E T+ LI S G +D+ +++ + M+ C ++ T N ++ + +
Sbjct: 424 EEMRS-KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 479 NDMFSKAKELFEE-----TTRANSSGYTFLSG--------DGAPL---------KPDEYT 516
+ +A+E+F+E +R + + T + G D A L KPD+YT
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYT 542
Query: 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
Y+S+L + + + M +GC+ D + L+ +AG+
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGR 590
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 77/340 (22%), Positives = 139/340 (40%), Gaps = 41/340 (12%)
Query: 157 AIRVLVDRLSEREMTAKNWKFVRIM-NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDW 215
++ V+V + F++ M NQ G + L+ GL G + A+ ++D
Sbjct: 261 SVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 216 VYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTL 274
+ L++ D + Y +++ L K G EA+ + + M+ DC+ P+ Y+++ TL
Sbjct: 321 M--LQEGYD-PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS--PNTVTYNTLISTL 375
Query: 275 GQVGLLKELVKLIERMRQKP--------SKRIKNM-----HRKNWDPV-------LEPDL 314
+ ++E +L + K + I+ + HR + EPD
Sbjct: 376 CKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDE 435
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE 374
YN ++++ + + KQ+ SG S TY L+ F +
Sbjct: 436 FTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITY------------NTLIDGFCKA 483
Query: 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434
K EA ME GV + Y L LC + R +DA +++++ + KP + T
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQM-IMEGQKPDKYT 542
Query: 435 FTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAML 473
+ L+ GG I I Q M + CEP+I T ++
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 82/430 (19%), Positives = 158/430 (36%), Gaps = 70/430 (16%)
Query: 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254
++L LG GS+ +L+ +K R + L+ + E L + + M
Sbjct: 88 EILLRLGRSGSFDDMKKILE---DMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWM 144
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
+++ L PD Y+ + L LK L+E I + W ++PD+
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLK----LVE---------ISHAKMSVWG--IKPDV 189
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY--------------- 359
+N ++ A +HQ + + + + GL P T+ M+ Y
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 360 --------RRCLLKVLVRAFWEEGKINEAVAAVRNM-EQRGVVGTASVYYELACCLCNNG 410
+ V+V F +EG++ +A+ ++ M Q G + L LC G
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTV 469
+ A+ +++ + + P T+ +I G + + + + M C PN T
Sbjct: 310 HVKHAIEIMDVMLQEGYD-PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTY 368
Query: 470 NAMLKVYSRNDMFSKAKELFEETT------------------------RANSSGYTFLSG 505
N ++ + + +A EL T R + +
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Query: 506 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
G +PDE+TY+ ++++ + + + + K M LSGC + L+ +A K
Sbjct: 429 KGC--EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKT 486
Query: 566 HLLEHAFDSL 575
E FD +
Sbjct: 487 REAEEIFDEM 496
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/501 (18%), Positives = 178/501 (35%), Gaps = 120/501 (23%)
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
KLL L ALR+FNL + N P+ A Y + + LG+ G ++ K++E M+
Sbjct: 51 VKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMK 110
Query: 292 QKPSKRIKN------------------MHRKNW---DPVLEPDLVVYNAVLNACVPSHQW 330
+ + + +W + L+PD YN +LN V +
Sbjct: 111 SSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSL 170
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
K V ++ G+KP +T+ VL++A ++ A+ + +M
Sbjct: 171 KLVEISHAKMSVWGIKPDVSTF------------NVLIKALCRAHQLRPAILMLEDMPSY 218
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450
G+V P E TFT ++ ++ G +D
Sbjct: 219 GLV------------------------------------PDEKTFTTVMQGYIEEGDLDG 242
Query: 451 CISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509
+ I + M + C + +VN ++ + + A +E +N G+
Sbjct: 243 ALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM--SNQDGFF-------- 292
Query: 510 LKPDEYTYSSML----EASATAHQWEYFE-----------YVYKGMALSGCQLDQTKHAW 554
PD+YT+++++ +A H E + Y Y + C+L + K A
Sbjct: 293 --PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350
Query: 555 LLVEASRAGKCHLLEHAFDSLLEA--------------------GEIPHPLFFTEMLIQA 594
+++ C +++L+ G +P F ++
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 595 IVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSE 654
+ N+ A+ L M E + L +S S+ KL++ LN L +
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS---LCSKGKLDEALNMLKQMELSGCA 467
Query: 655 ITVSNLSRALHALCRSEKERD 675
+V + + C++ K R+
Sbjct: 468 RSVITYNTLIDGFCKANKTRE 488
Score = 35.0 bits (79), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/261 (17%), Positives = 97/261 (37%), Gaps = 38/261 (14%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
L+ L + + + R++ G++ L++GL + R AM + + +
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE---M 426
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM-LEDCNLYPDIAAYHSVAVTLGQVG 278
+ K F Y L+ L G+ EAL + M L C + Y+++ +
Sbjct: 427 RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA--RSVITYNTLIDGFCKAN 484
Query: 279 LLKELVKLIERMRQK-----------------PSKRIKNMHRKNWDPVLE---PDLVVYN 318
+E ++ + M S+R+++ + ++E PD YN
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544
Query: 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKIN 378
++L K + + + +G +P TYG L+ + G++
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG------------TLISGLCKAGRVE 592
Query: 379 EAVAAVRNMEQRGVVGTASVY 399
A +R+++ +G+ T Y
Sbjct: 593 VASKLLRSIQMKGINLTPHAY 613
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/368 (20%), Positives = 150/368 (40%), Gaps = 32/368 (8%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
+PDLV Y V+N F + ++ + L+P Y ++
Sbjct: 218 QPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIY------------NTIIDG 265
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ +++A+ + ME +G+ Y L CLCN GRW DA ++ + R P
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 324
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 489
TF+ LI + + G + + ++ M K +P+I T ++++ + +D +AK++F
Sbjct: 325 DVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF 384
Query: 490 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549
E S + F PD TY+++++ + E V++ M+ G +
Sbjct: 385 EFMV----SKHCF---------PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNT 431
Query: 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINA 609
+ L+ +AG C + + F ++ G P+ + + +L EKA+ +
Sbjct: 432 VTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEY 491
Query: 610 MAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCR 669
+ + T + + E K+E + CN + + V + + CR
Sbjct: 492 LQRSKMEPTIYTYNIMIEG---MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 670 --SEKERD 675
S++E D
Sbjct: 549 KGSKEEAD 556
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/421 (19%), Positives = 173/421 (41%), Gaps = 54/421 (12%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDL---KSRFVYTKLLAILGKAGRPHEALRIFN 252
+ K +G W++++ + ++ +R + + +YT ++++LG+ G + L +F+
Sbjct: 111 VFKEFAGRGDWQRSLRLFKYM-----QRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 253 LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312
M + + +Y ++ G+ G + ++L++RM+ + + P
Sbjct: 166 EMPSQ-GVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK---------------ISP 209
Query: 313 DLVVYNAVLNACVPSH-QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAF 371
++ YN V+NAC W+G+ +F ++R G++P TY L+ A
Sbjct: 210 SILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTY------------NTLLSAC 257
Query: 372 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431
G +EA R M G+V + Y L R + ++ ++ S S P
Sbjct: 258 AIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMAS-GGSLPD 316
Query: 432 EITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFE 490
++ L+ + G I + + +F M+ C PN T + +L ++ ++ + ++LF
Sbjct: 317 ITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFL 376
Query: 491 ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 550
E +N+ PD TY+ ++E ++ ++ M + D
Sbjct: 377 EMKSSNTD-------------PDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDME 423
Query: 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN-YEKAVALINA 609
+ ++ + G + +P +T +I+A Q+ YE+A+ N
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTG-VIEAFGQAALYEEALVAFNT 482
Query: 610 M 610
M
Sbjct: 483 M 483
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/386 (20%), Positives = 144/386 (37%), Gaps = 54/386 (13%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
Y LL+ G EA +F M D + PD+ Y + T G++ L+++ L+
Sbjct: 249 TYNTLLSACAIRGLGDEAEMVFRTM-NDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGE 307
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M S PD+ YN +L A S K VF Q++ +G P+A
Sbjct: 308 MASGGSL---------------PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNA 352
Query: 350 ATYGLAMESY---------RRCLLK--------------VLVRAFWEEGKINEAVAAVRN 386
TY + + + R+ L+ +L+ F E G E V +
Sbjct: 353 NTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHD 412
Query: 387 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446
M + + Y + G +DA +++ + + P +TG+I +
Sbjct: 413 MVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTA-NDIVPSSKAYTGVIEAFGQAA 471
Query: 447 HIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 505
++ + F M + P+I T +++L ++R + +++ + L
Sbjct: 472 LYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSR-----------LVD 520
Query: 506 DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
G P D T+++ +EA ++E Y M S C D+ +L S A
Sbjct: 521 SGIPRNRD--TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLV 578
Query: 566 HLLEHAFDSLLEAGEIPHPLFFTEML 591
F+ + + +P + + ML
Sbjct: 579 DECREQFEEMKASDILPSIMCYCMML 604
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/376 (20%), Positives = 142/376 (37%), Gaps = 56/376 (14%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LL+ GS ++AM V + ++ + Y+ LL + G++GR + ++F L +
Sbjct: 323 LLEAYAKSGSIKEAMGVF---HQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF-LEM 378
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ N PD A Y+ + G+ G KE+V L M ++ +EPD+
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEEN---------------IEPDME 423
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLL----------- 364
Y ++ AC + + + + + + PS+ Y +E++ + L
Sbjct: 424 TYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTM 483
Query: 365 ------------KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 412
L+ +F G + E+ A + + G+ + G++
Sbjct: 484 HEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKF 543
Query: 413 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNA 471
++A+ ++ R P E T ++ +D+C F+ MK P+I
Sbjct: 544 EEAVKTYVDMEKSR-CDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCM 602
Query: 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 531
ML VY + + + EL EE S + G + +Y S W+
Sbjct: 603 MLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQ---MIKGDYDDDS---------NWQ 650
Query: 532 YFEYVYKGMALSGCQL 547
EYV + GC L
Sbjct: 651 IVEYVLDKLNSEGCGL 666
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 34/245 (13%)
Query: 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 455
A V+ E A G WQ ++ + + ++ KP E +T +I G +D C+ +F
Sbjct: 109 ALVFKEFA----GRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVF 164
Query: 456 QHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE-------------TTRANSSGYT 501
M ++ + A++ Y RN + + EL + T N+
Sbjct: 165 DEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARG 224
Query: 502 FLSGDG----------APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
L +G ++PD TY+++L A A + E V++ M G D T
Sbjct: 225 GLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTT 284
Query: 552 HAWLLVEASRAGKCHLLEHAFDSLLE---AGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608
++ L+ GK LE D L E G +P + +L + ++A+ + +
Sbjct: 285 YSHLV---ETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFH 341
Query: 609 AMAYA 613
M A
Sbjct: 342 QMQAA 346
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/395 (21%), Positives = 150/395 (37%), Gaps = 89/395 (22%)
Query: 221 DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280
D+ L Y ++A L KA +A+ + N M+++ + PD Y+S+ G
Sbjct: 224 DRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQP 282
Query: 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340
KE + +++MR +EPD+V Y+ +++ + + +F +
Sbjct: 283 KEAIGFLKKMRSDG---------------VEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327
Query: 341 RKSGLKPSAATYGLAMESY--------RRCLLKVLVR---------------AFWEEGKI 377
K GLKP TYG ++ Y LL ++VR A+ ++GK+
Sbjct: 328 TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKV 387
Query: 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTG 437
++A+ M Q+G+ A Y + LC +GR +DAML E++ S P I +
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLS-PGNIVYNS 446
Query: 438 ----------------LIISSMDGGHIDDCISIFQHMKDHC------------------- 462
LI+ +D G + I + HC
Sbjct: 447 LIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIG 506
Query: 463 -EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 521
+PN+ T N ++ Y +A +L LKP+ TYS+++
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVG-------------LKPNTVTYSTLI 553
Query: 522 EASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556
+ E ++K M SG D + +L
Sbjct: 554 NGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 92/455 (20%), Positives = 167/455 (36%), Gaps = 83/455 (18%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
LLKGL AM ++ + + + + + F Y LL L R EAL + ++M
Sbjct: 128 LLKGLCADKRTSDAMDIV--LRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMA 185
Query: 256 ED--CNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313
+D PD+ +Y +V G KE S + + + + D + PD
Sbjct: 186 DDRGGGSPPDVVSYTTVIN-----GFFKE----------GDSDKAYSTYHEMLDRGILPD 230
Query: 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE 373
+V YN+++ A + V + K+G+ P TY ++ +
Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTY------------NSILHGYCS 278
Query: 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 433
G+ EA+ ++ M GV Y L LC NGR +A + + + R KP EI
Sbjct: 279 SGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTK-RGLKP-EI 336
Query: 434 T------------------------------------FTGLIISSMDGGHIDDCISIFQH 457
T F+ LI + G +D + +F
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSK 396
Query: 458 MKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 516
M+ PN T A++ + ++ A FE+ L P
Sbjct: 397 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG-------------LSPGNIV 443
Query: 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576
Y+S++ T ++WE E + M G L+ ++ + G+ E F+ ++
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503
Query: 577 EAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611
G P+ + + ++ + ++A+ L++ M
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 96/467 (20%), Positives = 183/467 (39%), Gaps = 98/467 (20%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
+L+D L + + K M + GL LL+G KG+ + +LD +
Sbjct: 306 LLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 365
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
D +V++ L+ K G+ +A+ +F+ M + L P+ Y +V L + G
Sbjct: 366 GIHPD---HYVFSILICAYAKQGKVDQAMLVFSKMRQQ-GLNPNAVTYGAVIGILCKSGR 421
Query: 280 LKELVKLIERMRQK---PSKRIKN--MHR----KNWD-------PVLEPDLVVYNAVLNA 323
+++ + E+M + P + N +H W+ +L+ + + N+
Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 481
Query: 324 CVPSHQWKGVFW----VFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINE 379
+ SH +G +F+ + + G+KP+ TY L+ + GK++E
Sbjct: 482 IIDSHCKEGRVIESEKLFELMVRIGVKPNVITY------------NTLINGYCLAGKMDE 529
Query: 380 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL---EITFT 436
A+ + M G+ Y L C R +DA+++ ++++S S + I
Sbjct: 530 AMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQ 589
Query: 437 GLIIS-------------SMDGGHI------------------DDCISIFQHMKDHCEPN 465
GL + + G I DD + +FQ++ C +
Sbjct: 590 GLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNL---CLMD 646
Query: 466 IG--------TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 517
+ ++A+LKV RND +AK+LF S +G L P+ +TY
Sbjct: 647 LKLEARTFNIMIDALLKV-GRND---EAKDLF-----------VAFSSNG--LVPNYWTY 689
Query: 518 SSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
M E E + ++ M +GC +D +++ E + G+
Sbjct: 690 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 736
>sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620,
chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2
SV=1
Length = 563
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/431 (24%), Positives = 181/431 (41%), Gaps = 97/431 (22%)
Query: 158 IRVLVDRLSEREMTAKNW-KFVRIM--NQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLD 214
+R L+ R+S+RE K K+V+++ + L+F E LG W Q + V
Sbjct: 71 VRSLMSRISDREPLVKTLDKYVKVVRCDHCFLLFEE---------LGKSDKWLQCLEVFR 121
Query: 215 WVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274
W+ K + + VY+KL++++GK G+ A+ +F+ M ++ PD + Y+++
Sbjct: 122 WMQ--KQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEM-KNSGCRPDASVYNALITAH 178
Query: 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334
++ K +E++R K +K + R +P++V YN +L A S + V
Sbjct: 179 LHT---RDKAKALEKVRGYLDK-MKGIER------CQPNVVTYNILLRAFAQSGKVDQVN 228
Query: 335 WVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM---EQRG 391
+FK L S + P T+ M++Y + G I E A + M E +
Sbjct: 229 ALFKDLDMSPVSPDVYTFNGVMDAYGK------------NGMIKEMEAVLTRMRSNECKP 276
Query: 392 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK--PLEITFTGLIISSMDGGHID 449
+ T +V + + G+ Q+ + + KSL SK P TF +II+ ID
Sbjct: 277 DIITFNVLID------SYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID 330
Query: 450 DCISIFQHMKD------------------HCEP---------NIG---------TVNAML 473
+F+ M D +C +G T+NAML
Sbjct: 331 KAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAML 390
Query: 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533
+VY RN ++ +A +LF N+S + + PD TY + +A A E
Sbjct: 391 EVYCRNGLYIEADKLFH-----NASAFR--------VHPDASTYKFLYKAYTKADMKEQV 437
Query: 534 EYVYKGMALSG 544
+ + K M G
Sbjct: 438 QILMKKMEKDG 448
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 102/251 (40%), Gaps = 45/251 (17%)
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG-- 445
+QR + VY +L + G+ + AM + ++K+ +P + LI + +
Sbjct: 125 KQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKN-SGCRPDASVYNALITAHLHTRD 183
Query: 446 ---------GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496
G++D I + C+PN+ T N +L+ ++++ + LF++
Sbjct: 184 KAKALEKVRGYLDKMKGI-----ERCQPNVVTYNILLRAFAQSGKVDQVNALFKDL---- 234
Query: 497 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556
D +P+ PD YT++ +++A + E V M + C+ D L+
Sbjct: 235 ---------DMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVLI 285
Query: 557 VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL---------I 607
+ + +E F SL+ + E P F M+I NY KA + +
Sbjct: 286 DSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMII------NYGKARMIDKAEWVFKKM 339
Query: 608 NAMAYAPFHIT 618
N M Y P IT
Sbjct: 340 NDMNYIPSFIT 350
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 102/510 (20%), Positives = 208/510 (40%), Gaps = 63/510 (12%)
Query: 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVL 213
+A+A L++ + + ++ + M + ++ + ++KG+ G A +++
Sbjct: 381 QAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIV 440
Query: 214 DWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273
+ + ++ +YT L+ + R +A+R+ M E + PDI Y+S+ +
Sbjct: 441 KEMIASGCRPNV---VIYTTLIKTFLQNSRFGDAMRVLKEMKEQ-GIAPDIFCYNSLIIG 496
Query: 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGV 333
L + + E + M + L+P+ Y A ++ + + ++
Sbjct: 497 LSKAKRMDEARSFLVEMVENG---------------LKPNAFTYGAFISGYIEASEFASA 541
Query: 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV 393
K++R+ G+ P+ + L L+ + ++GK+ EA +A R+M +G++
Sbjct: 542 DKYVKEMRECGVLPN------------KVLCTGLINEYCKKGKVIEACSAYRSMVDQGIL 589
Query: 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453
G A Y L L N + DA + +++ + P ++ LI G++ S
Sbjct: 590 GDAKTYTVLMNGLFKNDKVDDAEEIFREMRG-KGIAPDVFSYGVLINGFSKLGNMQKASS 648
Query: 454 IFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT----RANSSGYTFL----- 503
IF M ++ PN+ N +L + R+ KAKEL +E + N+ Y +
Sbjct: 649 IFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYC 708
Query: 504 -SGDGA------------PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 550
SGD A L PD + Y+++++ + E ++ G GC
Sbjct: 709 KSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIF-GTNKKGCASSTA 767
Query: 551 KHAWLLVEASRAGKCHLLEHAFDSLLEA-----GEIPHPLFFTEMLIQAIVQSNYEKAVA 605
L+ + GK L + L++ G+ P+ + + M+ + N E A
Sbjct: 768 PFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGK-PNDVTYNIMIDYLCKEGNLEAAKE 826
Query: 606 LINAMAYAPFHITERQWTELFESNEDRISR 635
L + M A T +T L + D++ R
Sbjct: 827 LFHQMQNANLMPTVITYTSLL-NGYDKMGR 855
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/275 (18%), Positives = 109/275 (39%), Gaps = 31/275 (11%)
Query: 322 NACVPSHQWKGVF----WVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI 377
+ C+ +GV +F + SGL P A Y +E Y R E +
Sbjct: 351 DCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR------------EKNV 398
Query: 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTG 437
+ + M++R +V + Y + +C++G A +V+++ + +P + +T
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA-SGCRPNVVIYTT 457
Query: 438 LIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496
LI + + D + + + MK+ P+I N+++ S+ +A+ E
Sbjct: 458 LIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENG 517
Query: 497 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556
LKP+ +TY + + A ++ + K M G ++ L+
Sbjct: 518 -------------LKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLI 564
Query: 557 VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
E + GK A+ S+++ G + +T ++
Sbjct: 565 NEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 113/266 (42%), Gaps = 35/266 (13%)
Query: 214 DWVYGLKDKRDLKSRFVYTKLLAI------LGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267
D V L+ +K++ + ++A L KAGR EA +IF L+D L PD Y
Sbjct: 448 DSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF-YGLKDIGLVPDSVTY 506
Query: 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
+ + +VG + E +KL+ M + EPD++V N+++N +
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGC---------------EPDVIVVNSLINTLYKA 551
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387
+ + +F ++++ LKP+ TY L+ + GKI EA+ M
Sbjct: 552 DRVDEAWKMFMRMKEMKLKPTVVTY------------NTLLAGLGKNGKIQEAIELFEGM 599
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 447
Q+G + L CLC N A+ ++ K+ + P T+ +I + G
Sbjct: 600 VQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDM-GCVPDVFTYNTIIFGLVKNGQ 658
Query: 448 IDDCISIFQHMKDHCEPNIGTVNAML 473
+ + + F MK P+ T+ +L
Sbjct: 659 VKEAMCFFHQMKKLVYPDFVTLCTLL 684
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/508 (18%), Positives = 190/508 (37%), Gaps = 84/508 (16%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GLG + M +L + L K ++ + +T + +LG+AG+ +EA I M
Sbjct: 229 LMVGLGKRRDIDSVMGLLKEMETLGLKPNV---YTFTICIRVLGRAGKINEAYEILKRM- 284
Query: 256 EDCNLYPDIAAYHSVA---VTLGQVGLLKELVKLIERMRQKPSK--RIKNMHR----KNW 306
+D PD+ Y + T ++ KE+ + ++ R KP + I + R ++
Sbjct: 285 DDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDL 344
Query: 307 DPVLE-----------PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
D V + PD+V + +++A + + F +R G+ P+ TY
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTY--- 401
Query: 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415
L+ ++++A+ NME GV TA Y +G A
Sbjct: 402 ---------NTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSA 452
Query: 416 MLVVEKIKSL----------------------RHSK------------PLEITFTGLIIS 441
+ EK+K+ R +K P +T+ ++
Sbjct: 453 LETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKC 512
Query: 442 SMDGGHIDDCISIF-QHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 500
G ID+ I + + M++ CEP++ VN+++ + D +A ++F
Sbjct: 513 YSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMK---- 568
Query: 501 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560
LKP TY+++L + + +++GM GC + L
Sbjct: 569 ---------LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLC 619
Query: 561 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITER 620
+ + L +++ G +P + ++ + ++A+ + M +
Sbjct: 620 KNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYPDFVT 679
Query: 621 QWTELFESNEDRISRDKLEKLLNALCNC 648
T L + + D + + N L NC
Sbjct: 680 LCTLLPGVVKASLIEDAYKIITNFLYNC 707
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 135/340 (39%), Gaps = 56/340 (16%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y L+ L +A A +F L ++ PD+A Y+ + G+ G + EL +L + M
Sbjct: 788 YNLLIGGLLEADMIEIAQDVF-LQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEM 846
Query: 291 RQKPSKRIKNMHR---------KNWDPVLE------------PDLVVYNAVLNACVPSHQ 329
+ H N D L+ P Y +++ S +
Sbjct: 847 STHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 906
Query: 330 WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ 389
+F+ + G +P+ A Y +L+ F + G+ + A A + M +
Sbjct: 907 LYEAKQLFEGMLDYGCRPNCAIY------------NILINGFGKAGEADAACALFKRMVK 954
Query: 390 RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS--KPLEITFTGLIISSMDGGH 447
GV Y L CLC GR + + K L+ S P ++ LII+ + H
Sbjct: 955 EGVRPDLKTYSVLVDCLCMVGRVDEGL---HYFKELKESGLNP-DVVCYNLIINGLGKSH 1010
Query: 448 -IDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 504
+++ + +F MK P++ T N+++ M +A +++ E RA
Sbjct: 1011 RLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAG-------- 1062
Query: 505 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544
L+P+ +T+++++ + + + E+ VY+ M G
Sbjct: 1063 -----LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGG 1097
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/343 (19%), Positives = 124/343 (36%), Gaps = 36/343 (10%)
Query: 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKV 366
D ++P L YN ++ + + + VF Q++ +G P ATY +++Y +
Sbjct: 778 DLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGK----- 832
Query: 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426
GKI+E + M + + L G DA+ + + S R
Sbjct: 833 -------SGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDR 885
Query: 427 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKA 485
P T+ LI G + + +F+ M D+ C PN N ++ + + A
Sbjct: 886 DFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAA 945
Query: 486 KELF----EETTRANSSGYTFL---------SGDG---------APLKPDEYTYSSMLEA 523
LF +E R + Y+ L +G + L PD Y+ ++
Sbjct: 946 CALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIING 1005
Query: 524 SATAHQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
+H+ E ++ M S G D + L++ AG ++ + AG P
Sbjct: 1006 LGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEP 1065
Query: 583 HPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625
+ F ++ + E A A+ M F + +L
Sbjct: 1066 NVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 127/331 (38%), Gaps = 50/331 (15%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVR 369
P L Y++++ V + K++ GLKP+ T+ + +R
Sbjct: 219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTF------------TICIR 266
Query: 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429
GKINEA ++ M+ G Y L LC + A V EK+K+ RH K
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH-K 325
Query: 430 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT----VNAMLKVYSRNDMFSK 484
P +T+ L+ D +D + M KD P++ T V+A+ K + + F
Sbjct: 326 PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDT 385
Query: 485 AKELFEETTRANSSGY-TFLSG-----------------DGAPLKPDEYTYSSMLE---- 522
+ ++ N Y T + G + +KP YTY ++
Sbjct: 386 LDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGK 445
Query: 523 ASATAHQWEYFEYV-YKGMA--LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAG 579
+ + E FE + KG+A + C L ++AG+ + F L + G
Sbjct: 446 SGDSVSALETFEKMKTKGIAPNIVACNAS-------LYSLAKAGRDREAKQIFYGLKDIG 498
Query: 580 EIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610
+P + + M+ ++A+ L++ M
Sbjct: 499 LVPDSVTYNMMMKCYSKVGEIDEAIKLLSEM 529
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y ++ LGK+ R EAL +FN M + PD+ Y+S+ + LG G+++E K+ +
Sbjct: 999 YNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1058
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
++ LEP++ +NA++ S + + + V++ + G P+
Sbjct: 1059 QRAG---------------LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTG 1103
Query: 351 TY 352
TY
Sbjct: 1104 TY 1105
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 84/460 (18%), Positives = 170/460 (36%), Gaps = 56/460 (12%)
Query: 148 EKRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207
E + + L++ L + + + WK M + L T LL GLG G +
Sbjct: 531 ENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQ 590
Query: 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267
+A+ + + G+ K + + L L K AL++ M+ D PD+ Y
Sbjct: 591 EAIELFE---GMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMM-DMGCVPDVFTY 646
Query: 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327
+++ L + G +KE + +M++ ++ PD V +L V +
Sbjct: 647 NTIIFGLVKNGQVKEAMCFFHQMKK----------------LVYPDFVTLCTLLPGVVKA 690
Query: 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387
+ + + + A + + L+ + E I+ AV+ +
Sbjct: 691 SLIEDAYKIITNFLYNCADQPANLF-----------WEDLIGSILAEAGIDNAVSFSERL 739
Query: 388 EQRGVVGTA-SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446
G+ S+ + C + A + EK +P T+ LI ++
Sbjct: 740 VANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEAD 799
Query: 447 HIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRANSSGYT 501
I+ +F +K C P++ T N +L Y + +++F KE+ AN+ +
Sbjct: 800 MIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHN 859
Query: 502 F-LSG-------DGA-----------PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542
+SG D A P TY +++ + + + + +++GM
Sbjct: 860 IVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLD 919
Query: 543 SGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
GC+ + + L+ +AG+ F +++ G P
Sbjct: 920 YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRP 959
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/370 (20%), Positives = 144/370 (38%), Gaps = 49/370 (13%)
Query: 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300
R EA+ + + M+E PD + ++ L Q E V L+ERM K
Sbjct: 148 GNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGC----- 201
Query: 301 MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES-- 358
+PDLV Y AV+N + + ++ K ++ Y ++S
Sbjct: 202 ----------QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLC 251
Query: 359 -YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 417
YR +++A+ M+ +G+ Y L CLCN GRW DA
Sbjct: 252 KYRH---------------VDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 296
Query: 418 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVY 476
++ + R P +TF LI + G + + +F M + +PNI T N+++ +
Sbjct: 297 LLSDMLE-RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGF 355
Query: 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 536
+D +A+++F + PD TY++++ A + +
Sbjct: 356 CMHDRLDEAQQIFTLMVSKDC-------------LPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 537 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 596
++ M+ G + + L+ +A C + F ++ G P+ + + +L
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK 462
Query: 597 QSNYEKAVAL 606
EKA+ +
Sbjct: 463 NGKLEKAMVV 472
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/378 (20%), Positives = 139/378 (36%), Gaps = 78/378 (20%)
Query: 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA 265
+R L+ + +K F Y+ L++ L GR +A R+ + MLE + P++
Sbjct: 253 YRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER-KINPNVV 311
Query: 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325
++S+ + G L E KL + M Q+ ++P++V YN+++N
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRS---------------IDPNIVTYNSLINGFC 356
Query: 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385
+ +F + P TY L+ F + K+ + + R
Sbjct: 357 MHDRLDEAQQIFTLMVSKDCLPDVVTY------------NTLINGFCKAKKVVDGMELFR 404
Query: 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445
+M +RG+VG +T+T LI
Sbjct: 405 DMSRRGLVGNT------------------------------------VTYTTLIHGFFQA 428
Query: 446 GHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 504
D+ +F+ M D PNI T N +L +N KA +FE ++
Sbjct: 429 SDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK-------- 480
Query: 505 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
++PD YTY+ M E A + E ++ ++L G + D + ++ + G
Sbjct: 481 -----MEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535
Query: 565 CHLLEHAFDSLLEAGEIP 582
F + E G +P
Sbjct: 536 KEEAYTLFIKMKEDGPLP 553
Score = 40.4 bits (93), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 216 VYGLKDKRDLKSR------FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269
V G++ RD+ R YT L+ +A A +F M+ D ++P+I Y++
Sbjct: 397 VDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD-GVHPNIMTYNT 455
Query: 270 VAVTLGQVGLLKELVKLIERMRQ---KPSKRIKNMHRKN----------WDPV------- 309
+ L + G L++ + + E +++ +P N+ + WD
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVR 369
++PD++ YN +++ + + +F ++++ G P + TY L+R
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTY------------NTLIR 563
Query: 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419
A +G + ++ M G AS Y L + ++GR L V
Sbjct: 564 AHLRDGDKAASAELIKEMRSCRFAGDAST-YGLVTDMLHDGRLDKGFLEV 612
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/433 (20%), Positives = 172/433 (39%), Gaps = 51/433 (11%)
Query: 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254
KLL + + +S+ + + L+ DL S Y L+ + + AL + M
Sbjct: 85 KLLSAIAKMNKFDLVISLGERMQNLRISYDLYS---YNILINCFCRRSQLPLALAVLGKM 141
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM---RQKPSKRIKN-------MHRK 304
++ PDI S+ + E V L+++M +P+ N +H K
Sbjct: 142 MK-LGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200
Query: 305 NWDPV----------LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354
+ V +PDL Y V+N + K++ K ++ Y
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY-- 258
Query: 355 AMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 414
++ A +N+A+ M+ +G+ Y L CLCN GRW D
Sbjct: 259 ----------TTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSD 308
Query: 415 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAML 473
A ++ + R P +TF+ LI + + G + + ++ M K +P+I T ++++
Sbjct: 309 ASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 367
Query: 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533
+ +D +AK +FE +S D P+ TY+++++ A + E
Sbjct: 368 NGFCMHDRLDEAKHMFE----------LMISKDCF---PNVVTYNTLIKGFCKAKRVEEG 414
Query: 534 EYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQ 593
+++ M+ G + + L+ +AG C + + F ++ G P + ++ +L
Sbjct: 415 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Query: 594 AIVQSNYEKAVAL 606
EKA+ +
Sbjct: 475 LCKYGKLEKALVV 487
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/398 (20%), Positives = 160/398 (40%), Gaps = 49/398 (12%)
Query: 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHE 246
+FT G ++ GL +G A+S+L + K + D+ +YT ++ L ++
Sbjct: 220 LFTYGT---VVNGLCKRGDIDLALSLLKKMEKGKIEADV---VIYTTIIDALCNYKNVND 273
Query: 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306
AL +F M ++ + P++ Y+S+ L G + +L+ M + RK
Sbjct: 274 ALNLFTEM-DNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM----------IERK-- 320
Query: 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKV 366
+ P++V ++A+++A V + ++ ++ K + P TY
Sbjct: 321 ---INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY------------SS 365
Query: 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426
L+ F +++EA M + Y L C R ++ M + ++ S R
Sbjct: 366 LINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM-SQR 424
Query: 427 HSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKA 485
+T+ LI G D IF+ M D P+I T + +L + KA
Sbjct: 425 GLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA 484
Query: 486 KELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 545
+FE ++ ++PD YTY+ M+E A + E ++ ++L G
Sbjct: 485 LVVFEYLQKSK-------------MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV 531
Query: 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583
+ + + ++ R G + F + E G +P+
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 104/509 (20%), Positives = 189/509 (37%), Gaps = 51/509 (10%)
Query: 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234
+KF I +Q G FT L + L + +A S+++ V K K S F+
Sbjct: 105 FKF--ISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVE 162
Query: 235 LAILGKAGRPHEALRIFNLMLEDCNLYPD------IAAYHSVAVTLGQVG-LLKELVKLI 287
+ + G +AL I D PD ++ H V + G LL ++KL
Sbjct: 163 MRVTPMCGFLVDALMI---TYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKL- 218
Query: 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
P+ I + + D ++ V+N ++N VF ++ K L+P
Sbjct: 219 -----NPTGTIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQP 273
Query: 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 407
+ ++ L+ + + G ++E ME+ Y L LC
Sbjct: 274 TVVSF------------NTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALC 321
Query: 408 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 466
+ A + +++ R P ++ FT LI G ID +Q M +P+I
Sbjct: 322 KENKMDGAHGLFDEMCK-RGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDI 380
Query: 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526
N ++ + +N A+ + + R L+PD+ TY+++++
Sbjct: 381 VLYNTLVNGFCKNGDLVAARNIVDGMIRRG-------------LRPDKITYTTLIDGFCR 427
Query: 527 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 586
E + K M +G +LD+ + L+ + G+ E A +L AG P +
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487
Query: 587 FTEMLIQAIVQSNYEKAVALINAM---AYAPFHITERQWTELFESNEDRISRDKLEKLLN 643
+T M+ + + + L+ M + P +T + L + LL+
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVT---YNVLLNGLCKLGQMKNADMLLD 544
Query: 644 ALCNCNAASSEITVSNLSRALHALCRSEK 672
A+ N +IT + L H S K
Sbjct: 545 AMLNIGVVPDDITYNTLLEGHHRHANSSK 573
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 162/402 (40%), Gaps = 52/402 (12%)
Query: 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKEL 283
DL+ R T+L I + ++A+ +F+ M++ +P I ++ LL +
Sbjct: 51 DLRERLSKTRLRDI-----KLNDAIDLFSDMVKS-RPFPSIVDFNR---------LLSAI 95
Query: 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343
VKL K + ++ +K + DL +N V+N Q + ++ K
Sbjct: 96 VKL------KKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKL 149
Query: 344 GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELA 403
G +P T G LV F ++++AV+ V M + G Y +
Sbjct: 150 GYEPDRVTIG------------SLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAII 197
Query: 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHC 462
LC R DA ++I+ + +P +T+T L+ + D + M K
Sbjct: 198 DSLCKTKRVNDAFDFFKEIER-KGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKI 256
Query: 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 522
PN+ T +A+L + +N +AKELFEE R + + PD TYSS++
Sbjct: 257 TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS-------------IDPDIVTYSSLIN 303
Query: 523 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
+ + ++ M GC D + L+ +A + F + + G +
Sbjct: 304 GLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVS 363
Query: 583 HPLFFTEMLIQAIVQS-NYEKAVALINAMAYAPFHITERQWT 623
+ + + LIQ Q+ + +KA + M + F I+ WT
Sbjct: 364 NTVTYNT-LIQGFFQAGDVDKAQEFFSQMDF--FGISPDIWT 402
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/350 (19%), Positives = 134/350 (38%), Gaps = 43/350 (12%)
Query: 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302
R +A+ + + M+E PDI AY+++ +L + + + + + +K
Sbjct: 170 RVSDAVSLVDKMVE-IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG-------- 220
Query: 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362
+ P++V Y A++N S +W + + K + P+ TY
Sbjct: 221 -------IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYS--------- 264
Query: 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422
L+ AF + GK+ EA M + + Y L LC + R +A + + +
Sbjct: 265 ---ALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 321
Query: 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDM 481
S + +++ LI ++D + +F+ M N T N +++ + +
Sbjct: 322 VS-KGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 541
KA+E F + D + PD +TY+ +L + E +++ M
Sbjct: 381 VDKAQEFFSQM-------------DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427
Query: 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
LD + ++ + GK F SL G P + +T M+
Sbjct: 428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMM 477
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 136/372 (36%), Gaps = 55/372 (14%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ G + A+S++D + + K D+ + Y ++ L K R ++A F +
Sbjct: 161 LVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVA---YNAIIDSLCKTKRVNDAFDFFK-EI 216
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E + P++ Y ++ L + +L+ M +K + P+++
Sbjct: 217 ERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK---------------ITPNVI 261
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y+A+L+A V + + +F+++ + + P TY L+
Sbjct: 262 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYS------------SLINGLCLHD 309
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
+I+EA M +G + Y L C R +D M + ++ S R +T+
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREM-SQRGLVSNTVTY 368
Query: 436 TGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE--- 491
LI G +D F M P+I T N +L N KA +FE+
Sbjct: 369 NTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQK 428
Query: 492 -------------------TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEY 532
T + + F S LKPD TY++M+ T
Sbjct: 429 REMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHE 488
Query: 533 FEYVYKGMALSG 544
E +Y M G
Sbjct: 489 VEALYTKMKQEG 500
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 129/304 (42%), Gaps = 33/304 (10%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
EP +V + ++LN + ++F Q+ G KP+ Y ++
Sbjct: 148 EPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIY------------NTIIDG 195
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ +++ A+ + ME+ G+ Y L LC++GRW DA +V + R P
Sbjct: 196 LCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTK-REIYP 254
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAM---LKVYSRNDMFSKAK 486
TF LI + + G + + ++ M + +P+I T + + L +YSR D +A+
Sbjct: 255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD---EAE 311
Query: 487 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 546
E+F F+ G PD TYS ++ + + E+ ++ M+ G
Sbjct: 312 EMF-----------GFMVSKGC--FPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358
Query: 547 LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606
+ + L+ RAGK ++ E F ++ G P+ + + +L EKA+ +
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 607 INAM 610
+ M
Sbjct: 419 LADM 422
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 44/244 (18%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDL-KSRFVYTKLLAILGKAGRPHEALRIFNLM 254
L+ GL G W A ++ + KR++ F + L+ K GR EA + M
Sbjct: 227 LISGLCSSGRWSDATRMVSCM----TKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEM 282
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
+ +L PDI Y + L L E ++ M K PD+
Sbjct: 283 IRR-SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGC---------------FPDV 326
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY-------------RR 361
V Y+ ++N S + + +F ++ + G+ + TY + ++ Y RR
Sbjct: 327 VTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRR 386
Query: 362 CLL----------KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 411
+ VL+ + GKI +A+ + +M++ G+ Y + +C G
Sbjct: 387 MVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGE 446
Query: 412 WQDA 415
DA
Sbjct: 447 VADA 450
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/365 (21%), Positives = 150/365 (41%), Gaps = 79/365 (21%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
+ YT+L+ LGKAGR EA + ML D L PD+ +++ LG+VG ++EL +
Sbjct: 304 YTYTELIKGLGKAGRVDEAYGFYKDMLRD-GLTPDVVFLNNLMNILGKVGRVEELTNVFS 362
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS--HQWKGVFWVFKQLRKSGLK 346
M M R P +V YN V+ A S H + W F +++ +
Sbjct: 363 EM---------GMWR------CTPTVVSYNTVIKALFESKAHVSEVSSW-FDKMKADSVS 406
Query: 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 406
PS TY +L+ + + ++ +A+ + M+++G + Y L L
Sbjct: 407 PSEFTYS------------ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINAL 454
Query: 407 CNNGRWQDAMLVVEKIKS-------------LRH---------------------SKPLE 432
R++ A + +++K ++H S P
Sbjct: 455 GKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDV 514
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
+ L+ + G I++ S+ + M+++ C +I + N +L ++R + +A E+FE
Sbjct: 515 YAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFET 574
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
+ +KPD TY+++L A A +E + + M G + D
Sbjct: 575 IKHSG-------------IKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAIT 621
Query: 552 HAWLL 556
++ +L
Sbjct: 622 YSSIL 626
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 14/214 (6%)
Query: 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422
+L LV+A +++A++ + R T+S Y + L G+ + V ++
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223
Query: 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC-EPNIGTVNAMLKVYSRNDM 481
+ P IT++ LI S G D I +F MKD+C +P +L +Y +
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGK 283
Query: 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 541
KA +LFEE RA S P YTY+ +++ A + + YK M
Sbjct: 284 VEKALDLFEEMKRAGCS-------------PTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Query: 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSL 575
G D L+ + G+ L + F +
Sbjct: 331 RDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEM 364
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 24/213 (11%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
+L+D + K + M++ G L+ LG + A + L
Sbjct: 414 ILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKE---L 470
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
K+ S VY ++ GK G+ EA+ +FN M ++ PD+ AY+++ + + G+
Sbjct: 471 KENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEM-KNQGSGPDVYAYNALMSGMVKAGM 529
Query: 280 LKELVKLIERMRQKPSKRIKNMHR----------------KNWDPV----LEPDLVVYNA 319
+ E L+ +M + + N H + ++ + ++PD V YN
Sbjct: 530 INEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNT 589
Query: 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352
+L + ++ + ++++ G + A TY
Sbjct: 590 LLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 14/163 (8%)
Query: 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526
++ ++K R M SKA +F + G KP TY+S++
Sbjct: 163 AVLSELVKALGRAKMVSKALSVFYQ-------------AKGRKCKPTSSTYNSVILMLMQ 209
Query: 527 AHQWEYFEYVYKGMALSG-CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 585
Q E VY M G C D ++ L+ + G+ FD + + P
Sbjct: 210 EGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEK 269
Query: 586 FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 628
+T +L EKA+ L M A T +TEL +
Sbjct: 270 IYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKG 312
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/401 (21%), Positives = 152/401 (37%), Gaps = 53/401 (13%)
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL R EA+ + + M+E PD + ++ L Q E V L+ERM K
Sbjct: 151 LLNGFCHGNRISEAVALVDQMVE-MGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVK 209
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
+PDLV Y AV+N + + ++ K ++ Y
Sbjct: 210 GC---------------QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY- 253
Query: 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413
++ + +++A ME +G+ Y L CLCN GRW
Sbjct: 254 -----------NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302
Query: 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM--KDHCEPNIGTVNA 471
DA ++ + ++ P + F LI + + G + + ++ M HC P++ N
Sbjct: 303 DASRLLSDMLE-KNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNT 361
Query: 472 MLKVYSRNDMFSKAKELFEETTR----ANSSGYTFL--------SGDGAPL--------- 510
++K + + + E+F E ++ N+ YT L D A +
Sbjct: 362 LIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDG 421
Query: 511 -KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLE 569
PD TY+ +L+ E V++ M +LD + ++ +AGK
Sbjct: 422 VHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGW 481
Query: 570 HAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610
F SL G P+ + +T M+ + E+A AL M
Sbjct: 482 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEM 522
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 42/296 (14%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
F Y L++ L GR +A R+ + MLE N+ PD+ ++++ + G L E KL +
Sbjct: 286 FTYNPLISCLCNYGRWSDASRLLSDMLEK-NINPDLVFFNALIDAFVKEGKLVEAEKLYD 344
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
M +K+ H PD+V YN ++ + + VF+++ + GL +
Sbjct: 345 EM-------VKSKH-------CFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408
TY L+ F++ + A + M GV Y L LCN
Sbjct: 391 TVTY------------TTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCN 438
Query: 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIG 467
NG + A++V E ++ R K +T+T +I + G ++D +F + +PN+
Sbjct: 439 NGNVETALVVFEYMQK-RDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
T M+ + R + +A LF E + DG PL P+ TY++++ A
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVE-----------MKEDG-PL-PNSGTYNTLIRA 540
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/305 (20%), Positives = 125/305 (40%), Gaps = 32/305 (10%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ L + G W A +L + DL + L+ K G+ EA ++++ M+
Sbjct: 291 LISCLCNYGRWSDASRLLSDMLEKNINPDL---VFFNALIDAFVKEGKLVEAEKLYDEMV 347
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ + +PD+ AY+++ + ++E +++ M Q+ L + V
Sbjct: 348 KSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRG---------------LVGNTV 392
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y +++ + VFKQ+ G+ P TY +L+ G
Sbjct: 393 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTY------------NILLDGLCNNG 440
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
+ A+ M++R + Y + LC G+ +D + + SL+ KP +T+
Sbjct: 441 NVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSL-SLKGVKPNVVTY 499
Query: 436 TGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494
T ++ G ++ ++F MK D PN GT N +++ R+ + + EL +E
Sbjct: 500 TTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRS 559
Query: 495 ANSSG 499
+G
Sbjct: 560 CGFAG 564
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 81/210 (38%), Gaps = 40/210 (19%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ +A A +F M+ D ++PDI Y+ + L G ++ + + E M
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSD-GVHPDIMTYNILLDGLCNNGNVETALVVFEYM 452
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
+++ K D+V Y ++ A + + + + +F L G+KP+
Sbjct: 453 QKRDMKL---------------DIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVV 497
Query: 351 TYGLAMESYRRCLLK-----------------------VLVRAFWEEGKINEAVAAVRNM 387
TY M + R LK L+RA +G + ++ M
Sbjct: 498 TYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEM 557
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAML 417
G G AS + L + ++GR + L
Sbjct: 558 RSCGFAGDAST-FGLVTNMLHDGRLDKSFL 586
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/359 (20%), Positives = 147/359 (40%), Gaps = 43/359 (11%)
Query: 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293
LL R +A+ + M+E PD ++++ L + E V L++RM K
Sbjct: 157 LLNGFCHGNRISDAVSLVGQMVE-MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVK 215
Query: 294 PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353
+PDLV Y V+N + K++ + ++P Y
Sbjct: 216 GC---------------QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIY- 259
Query: 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413
++ A +N+A+ M+ +G+ Y L CLCN GRW
Sbjct: 260 -----------NTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAM 472
DA ++ + R P +TF+ LI + + G + + ++ M K +P+I T +++
Sbjct: 309 DASRLLSDMIE-RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367
Query: 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEY 532
+ + +D +AK +FE +S D P+ TY+++++ A + +
Sbjct: 368 INGFCMHDRLDEAKHMFE----------LMISKD---CFPNVVTYNTLIKGFCKAKRVDE 414
Query: 533 FEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+++ M+ G + + L+ +A +C + F ++ G +P + ++ +L
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILL 473
Score = 63.9 bits (154), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/417 (20%), Positives = 153/417 (36%), Gaps = 97/417 (23%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFN-LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F + L+ L + R EA+ + + ++++ C PD+ Y V L + G + + L+
Sbjct: 187 FTFNTLIHGLFRHNRASEAVALVDRMVVKGCQ--PDLVTYGIVVNGLCKRGDIDLALSLL 244
Query: 288 ERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347
++M Q +EP +V+YN +++A +F ++ G++P
Sbjct: 245 KKMEQGK---------------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRP 289
Query: 348 SAATYGLAMESYRRCL---------------------------LKVLVRAFWEEGKINEA 380
+ TY S RCL L+ AF +EGK+ EA
Sbjct: 290 NVVTY----NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 345
Query: 381 VAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM----LVVEK------------IKS 424
M +R + Y L C + R +A L++ K IK
Sbjct: 346 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 405
Query: 425 LRHSKPLE------------------ITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPN 465
+K ++ +T+T LI D+ +F+ M D P+
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465
Query: 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 525
I T + +L N A +FE R+ ++PD YTY+ M+E
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSK-------------MEPDIYTYNIMIEGMC 512
Query: 526 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
A + E ++ ++L G + + + ++ R G + F + E G +P
Sbjct: 513 KAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569
Score = 40.0 bits (92), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 30/219 (13%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ +A A +F M+ D + PDI Y + L G ++ + + E +
Sbjct: 434 YTTLIHGFFQARECDNAQIVFKQMVSD-GVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
++ +EPD+ YN ++ + + + + +F L G+KP+
Sbjct: 493 QRSK---------------MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVV 537
Query: 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 410
TY M F +G EA A R M++ G + + Y L +G
Sbjct: 538 TYTTMMS------------GFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Query: 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 449
+ ++ +++S R + + GL+ + + G +D
Sbjct: 586 DKAASAELIREMRSCRFVG--DASTIGLVTNMLHDGRLD 622
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/391 (19%), Positives = 155/391 (39%), Gaps = 51/391 (13%)
Query: 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302
R +A+ + + M+E PD + ++ L E V L++RM Q+
Sbjct: 170 RISDAVALVDQMVE-MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC------- 221
Query: 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES---Y 359
+P+LV Y V+N + ++ + ++ + ++S Y
Sbjct: 222 --------QPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKY 273
Query: 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLV 418
R +++A+ + ME +G+ Y L CLC+ GRW DA L+
Sbjct: 274 RH---------------VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318
Query: 419 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYS 477
+ I+ + P +TF LI + + G + ++ M K +P+I T N+++ +
Sbjct: 319 SDMIE--KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFC 376
Query: 478 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 537
+D KAK++FE + PD TY+++++ + + E ++
Sbjct: 377 MHDRLDKAKQMFEFMVSKDCF-------------PDVVTYNTLIKGFCKSKRVEDGTELF 423
Query: 538 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 597
+ M+ G D + L+ G C + F ++ G P + ++ +L
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Query: 598 SNYEKAVALINAMAYAPFHITERQWTELFES 628
EKA+ + + M + + +T + E
Sbjct: 484 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 514
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 34/207 (16%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ L G A ++F M+ D + PDI Y + L G L++ +++ + M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496
Query: 291 RQKPSK--------RIKNMHR-----KNWDPV-------LEPDLVVYNAVLNACVPSHQW 330
++ K I+ M + WD ++P++V YN +++
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 556
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
+ + + K++++ G P++ TY L+RA +G + +R M
Sbjct: 557 QEAYALLKKMKEDGPLPNSGTY------------NTLIRAHLRDGDKAASAELIREMRSC 604
Query: 391 GVVGTASVYYELACCLCNNGRWQDAML 417
VG AS +A L ++GR + L
Sbjct: 605 RFVGDASTIGLVANML-HDGRLDKSFL 630
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 47/222 (21%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y L+ R +A ++F M+ +DC +PD+ Y++ L+K K
Sbjct: 366 FTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC--FPDVVTYNT---------LIKGFCK-- 412
Query: 288 ERMRQKPSKRIKN---MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
SKR+++ + R+ L D V Y ++ VFKQ+ G
Sbjct: 413 -------SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 345 LKPSAATYGL-------------AMESYRRC----------LLKVLVRAFWEEGKINEAV 381
+ P TY + A+E + + ++ + GK+++
Sbjct: 466 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 423
++ +GV Y + LC+ Q+A +++K+K
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 567
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 76.3 bits (186), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/391 (19%), Positives = 155/391 (39%), Gaps = 51/391 (13%)
Query: 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302
R +A+ + + M+E PD + ++ L E V L++RM Q+
Sbjct: 95 RISDAVALVDQMVE-MGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGC------- 146
Query: 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES---Y 359
+P+LV Y V+N F + ++ + ++ + ++S Y
Sbjct: 147 --------QPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKY 198
Query: 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLV 418
R +++A+ + ME +G+ Y L CLC+ GRW DA L+
Sbjct: 199 RH---------------VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243
Query: 419 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYS 477
+ I+ + P +TF LI + + G + + M K +P+I T N+++ +
Sbjct: 244 SDMIE--KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 301
Query: 478 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 537
+D KAK++FE + PD TY+++++ + + E ++
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCF-------------PDLDTYNTLIKGFCKSKRVEDGTELF 348
Query: 538 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 597
+ M+ G D + L+ G C + F ++ G P + ++ +L
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Query: 598 SNYEKAVALINAMAYAPFHITERQWTELFES 628
EKA+ + + M + + +T + E
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEG 439
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 34/207 (16%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT L+ L G A ++F M+ D + PDI Y + L G L++ +++ + M
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSD-GVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421
Query: 291 RQKPSK--------RIKNMHR-----KNWDPV-------LEPDLVVYNAVLNACVPSHQW 330
++ K I+ M + WD ++P++V YN +++
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLL 481
Query: 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390
+ + + K++++ G P + TY L+RA +G + +R M
Sbjct: 482 QEAYALLKKMKEDGPLPDSGTY------------NTLIRAHLRDGDKAASAELIREMRSC 529
Query: 391 GVVGTASVYYELACCLCNNGRWQDAML 417
VG AS +A L ++GR + L
Sbjct: 530 RFVGDASTIGLVANML-HDGRLDKSFL 555
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 47/222 (21%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLML-EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI 287
F Y L+ R +A ++F M+ +DC +PD+ Y++ L+K K
Sbjct: 291 FTYNSLINGFCMHDRLDKAKQMFEFMVSKDC--FPDLDTYNT---------LIKGFCK-- 337
Query: 288 ERMRQKPSKRIKN---MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
SKR+++ + R+ L D V Y ++ VFKQ+ G
Sbjct: 338 -------SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Query: 345 LKPSAATYGL-------------AMESYRRC----------LLKVLVRAFWEEGKINEAV 381
+ P TY + A+E + + ++ + GK+++
Sbjct: 391 VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 423
++ +GV Y + LC+ Q+A +++K+K
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMK 492
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/348 (22%), Positives = 140/348 (40%), Gaps = 47/348 (13%)
Query: 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKL 286
+ F Y ++ + K G A +F M + L PD Y+S+ G+VG L + V
Sbjct: 261 TVFTYNIMIDCMCKEGDVEAARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF 319
Query: 287 IERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346
E M+ D EPD++ YNA++N + +++++ +GLK
Sbjct: 320 FEEMK---------------DMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLK 364
Query: 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCL 406
P+ +Y LV AF +EG + +A+ +M + G+V Y L
Sbjct: 365 PNVVSY------------STLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412
Query: 407 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPN 465
C G DA + ++ + + +T+T LI D + + +F M PN
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNV-VTYTALIDGLCDAERMKEAEELFGKMDTAGVIPN 471
Query: 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASA 525
+ + NA++ + + +A EL E L G G +KPD Y + +
Sbjct: 472 LASYNALIHGFVKAKNMDRALELLNE-----------LKGRG--IKPDLLLYGTFIWGLC 518
Query: 526 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK----CHLLE 569
+ + E + V M G + + + L+ ++G HLL+
Sbjct: 519 SLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 566
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/319 (22%), Positives = 128/319 (40%), Gaps = 36/319 (11%)
Query: 322 NACVPSHQWKGVF-WVFKQLRKSGLKPSAATYGLAMESYR------RCLLKVLVRAFWEE 374
N CVP GVF +F L G+ A M+ +R C L+ F +
Sbjct: 186 NVCVPGF---GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSC--NGLLHRFAKL 240
Query: 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434
GK ++ ++M G T Y + C+C G + A + E++K R P +T
Sbjct: 241 GKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK-FRGLVPDTVT 299
Query: 435 FTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEET- 492
+ +I G +DD + F+ MKD CEP++ T NA++ + + E + E
Sbjct: 300 YNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMK 359
Query: 493 ---TRANSSGYTFL----SGDG--------------APLKPDEYTYSSMLEASATAHQWE 531
+ N Y+ L +G L P+EYTY+S+++A+
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLS 419
Query: 532 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+ M G + + + L+ A + E F + AG IP+ + ++
Sbjct: 420 DAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALI 479
Query: 592 IQAIVQSNYEKAVALINAM 610
+ N ++A+ L+N +
Sbjct: 480 HGFVKAKNMDRALELLNEL 498
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 87/430 (20%), Positives = 168/430 (39%), Gaps = 56/430 (13%)
Query: 176 KFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235
+F R M +GL L+ +G +QA+ + ++ + + + YT L+
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK---FYVDMRRVGLVPNEYTYTSLI 409
Query: 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS 295
K G +A R+ N ML+ + ++ Y ++ L +KE +L +M
Sbjct: 410 DANCKIGNLSDAFRLGNEMLQ-VGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAG- 467
Query: 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
+ P+L YNA+++ V + + +L+ G+KP YG
Sbjct: 468 --------------VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTF 513
Query: 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415
+ + C L+ KI A + M++ G+ + +Y L +G +
Sbjct: 514 I--WGLCSLE----------KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEG 561
Query: 416 MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAML 473
+ +++++K L + +TF LI + + F + + + N AM+
Sbjct: 562 LHLLDEMKELDIEVTV-VTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMI 620
Query: 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533
+++ A LFE+ + L PD Y+S+++ +
Sbjct: 621 DGLCKDNQVEAATTLFEQMVQKG-------------LVPDRTAYTSLMDGNFKQGNVLEA 667
Query: 534 EYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE--AGEIPHPLFFTEML 591
+ MA G +LD + L+ S C+ L+ A S LE GE HP E+L
Sbjct: 668 LALRDKMAEIGMKLDLLAYTSLVWGLSH---CNQLQKA-RSFLEEMIGEGIHP---DEVL 720
Query: 592 IQAIVQSNYE 601
++++ +YE
Sbjct: 721 CISVLKKHYE 730
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/436 (22%), Positives = 174/436 (39%), Gaps = 79/436 (18%)
Query: 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD 263
G R A +L + L DK + + +Y ++ L + R +A ++ M + N+YPD
Sbjct: 249 GRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAM-DKINVYPD 307
Query: 264 IAAYHSVAVTLGQVGL-LKELVKLIERMRQKPSKRIKN---------------------- 300
+ TL + G KE+ ++ E+M +K K ++
Sbjct: 308 NVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQ 367
Query: 301 --MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES 358
M +K + + +VYN +++A S+ + V +F ++R GLKPSAATY + M++
Sbjct: 368 TEMEKKG----IRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDA 423
Query: 359 YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ----- 413
Y R + +V +R ME G+ Y C + GR +
Sbjct: 424 YARRMQPDIVETL------------LREMEDLGLEPNVKSY---TCLISAYGRTKKMSDM 468
Query: 414 --DAMLVVEKIKSLRHSKPLEITFTGLIIS-SMDGGHIDDCISIFQHMKDHCEPNIGTVN 470
DA L ++K+ KP ++T LI + S+ G H S + K+ +P++ T
Sbjct: 469 AADAFLRMKKV----GLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYT 524
Query: 471 AMLKVYSRNDMFSKAKELFEETTRANSSGY-----TFLSG-----------------DGA 508
++L + R+ K E+++ R G T L G
Sbjct: 525 SVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKM 584
Query: 509 PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLL 568
L+P TY+ ++ A A Q + K MA + D ++ ++ R
Sbjct: 585 GLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRA 644
Query: 569 EHAFDSLLEAGEIPHP 584
++++G++P P
Sbjct: 645 FFYHKMMVKSGQVPDP 660
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 89/397 (22%), Positives = 163/397 (41%), Gaps = 49/397 (12%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
VL+D L + K + + M + GLM L+ G +G A+ V++ +
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
K + ++ Y +L+ K+ H+A+ + N MLE + PD+ Y+S+ + G
Sbjct: 423 KLSPNTRT---YNELIKGYCKSNV-HKAMGVLNKMLER-KVLPDVVTYNSLIDGQCRSGN 477
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
+L+ M D L PD Y +++++ S + + +F
Sbjct: 478 FDSAYRLLSLMN---------------DRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDS 522
Query: 340 LRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399
L + G+ P+ Y L+ + + GK++EA + M + + + +
Sbjct: 523 LEQKGVNPNVVMY------------TALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM- 458
L LC +G+ ++A L+ EK+ + +P T T LI + G D S FQ M
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKI-GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQML 629
Query: 459 KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518
+P+ T ++ Y R A+++ + R N + PD +TYS
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKM-RENG------------VSPDLFTYS 676
Query: 519 SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555
S+++ Q + V K M +GC+ Q H +L
Sbjct: 677 SLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQ--HTFL 711
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 93/449 (20%), Positives = 185/449 (41%), Gaps = 73/449 (16%)
Query: 193 MLKLLKGLGDKGSWRQAMSVLDWVYGL-KDKR-DLKSRFV---YTKLLAILGKAGRPHEA 247
M+K +GD A+ VLD + KD+R +LK + + Y LL L + G E
Sbjct: 149 MIKSCDSVGD------ALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEM 202
Query: 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307
+++ MLED + P+I Y+ + ++G ++E + + ++ +
Sbjct: 203 KQVYMEMLED-KVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG------------- 248
Query: 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY-----GL-------- 354
L+PD Y +++ F VF ++ G + + Y GL
Sbjct: 249 --LDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 355 AMESYRR-----CL-----LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 404
AM+ + + C VL+++ + +EA+ V+ ME+ G+ Y L
Sbjct: 307 AMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366
Query: 405 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CE 463
LC+ +++ A ++ ++ + P IT+ LI G I+D + + + M+
Sbjct: 367 SLCSQCKFEKARELLGQMLE-KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLS 425
Query: 464 PNIGTVNAMLKVYSRNDMFSKA--------KELFEETTRANS------------SGYTFL 503
PN T N ++K Y ++++ +++ + NS S Y L
Sbjct: 426 PNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 504 S-GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 562
S + L PD++TY+SM+++ + + E ++ + G + + L+ +A
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545
Query: 563 GKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
GK + +L +P+ L F ++
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALI 574
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 108/265 (40%), Gaps = 32/265 (12%)
Query: 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234
++ + +MN GL+ + ++ L +A + D L+ K + +YT L
Sbjct: 482 YRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD---SLEQKGVNPNVVMYTAL 538
Query: 235 LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294
+ KAG+ EA + ML N P+ ++++ L G LKE L E+M
Sbjct: 539 IDGYCKAGKVDEAHLMLEKMLSK-NCLPNSLTFNALIHGLCADGKLKEATLLEEKMV--- 594
Query: 295 SKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354
+ P + D ++ + +L H + F+Q+ SG KP A TY
Sbjct: 595 --------KIGLQPTVSTDTILIHRLLKDGDFDHAYSR----FQQMLSSGTKPDAHTYTT 642
Query: 355 AMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 414
+++Y R EG++ +A + M + GV Y L + G+
Sbjct: 643 FIQTYCR------------EGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF 690
Query: 415 AMLVVEKIKSLRHSKPLEITFTGLI 439
A V+++++ +P + TF LI
Sbjct: 691 AFDVLKRMRD-TGCEPSQHTFLSLI 714
Score = 33.1 bits (74), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 22/214 (10%)
Query: 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291
T L+ L K G A F ML PD Y + T + G L + ++ +MR
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSS-GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMR 664
Query: 292 QKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351
+ + PDL Y++++ Q F V K++R +G +PS T
Sbjct: 665 ENG---------------VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT 709
Query: 352 Y------GLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 405
+ L M+ ++ + + A + + V + M + V A Y +L
Sbjct: 710 FLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILG 769
Query: 406 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 439
+C G + A V + ++ P E+ F L+
Sbjct: 770 ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALL 803
>sp|Q9M3A8|PP273_ARATH Pentatricopeptide repeat-containing protein At3g49240
OS=Arabidopsis thaliana GN=EMB1796 PE=2 SV=1
Length = 629
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 76/342 (22%), Positives = 147/342 (42%), Gaps = 47/342 (13%)
Query: 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302
+P AL + L +++ L P IA + + L L++ +++ E M K
Sbjct: 180 KPEIALEHYKLFIDNAPLNPSIATFRILVKGLVSNDNLEKAMEIKEDMAVKGF------- 232
Query: 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK--SGLKPSAATYGLAMESYR 360
V++P VVY+ ++ CV + GV ++++L++ G YG M+ Y
Sbjct: 233 ------VVDP--VVYSYLMMGCVKNSDADGVLKLYQELKEKLGGFVDDGVVYGQLMKGY- 283
Query: 361 RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVE 420
+K + + E EAV E V +A Y + L NG++ +A+ + +
Sbjct: 284 --FMKEMEKEAME--CYEEAVG-----ENSKVRMSAMAYNYVLEALSENGKFDEALKLFD 334
Query: 421 KIKSLRHSKPLEI-----TFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLK 474
+K H+ P + TF ++ GG ++ + +F+ M D C P+ + N ++
Sbjct: 335 AVKK-EHNPPRHLAVNLGTFNVMVNGYCAGGKFEEAMEVFRQMGDFKCSPDTLSFNNLMN 393
Query: 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFE 534
N++ ++A++L+ E N +KPDEYTY +++ + +
Sbjct: 394 QLCDNELLAEAEKLYGEMEEKN-------------VKPDEYTYGLLMDTCFKEGKIDEGA 440
Query: 535 YVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576
YK M S + + + L + +AGK + FD ++
Sbjct: 441 AYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMV 482
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 114/274 (41%), Gaps = 42/274 (15%)
Query: 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254
+L+KG K ++AM + G K + S Y +L L + G+ EAL++F+ +
Sbjct: 278 QLMKGYFMKEMEKEAMECYEEAVGENSKVRM-SAMAYNYVLEALSENGKFDEALKLFDAV 336
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELV----KLIERMRQKPSKRIKNMHRKNWDPVL 310
++ N +AV LG ++ K E M + R+ D
Sbjct: 337 KKEHN------PPRHLAVNLGTFNVMVNGYCAGGKFEEAME---------VFRQMGDFKC 381
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
PD + +N ++N + ++ ++ + +KP TYGL M++ C
Sbjct: 382 SPDTLSFNNLMNQLCDNELLAEAEKLYGEMEEKNVKPDEYTYGLLMDT---C-------- 430
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM----LVVEKIKSLR 426
++EGKI+E A + M + + +VY L L G+ DA ++V K+K
Sbjct: 431 -FKEGKIDEGAAYYKTMVESNLRPNLAVYNRLQDQLIKAGKLDDAKSFFDMMVSKLKMDD 489
Query: 427 HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460
+ + ++ + + G +D+ + I M D
Sbjct: 490 EA------YKFIMRALSEAGRLDEMLKIVDEMLD 517
>sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050
OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
Length = 473
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 141/355 (39%), Gaps = 45/355 (12%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-AYHSVAVTLGQVGLLKELVKLIER 289
Y L+ I + G R+ + M++D +P A ++ + + G+ GL K+ V ++
Sbjct: 152 YHLLMKIFAECGEYKAMWRLVDEMVQDG--FPTTARTFNLLICSCGEAGLAKQAV--VQF 207
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M+ K N+ P YNA+LN+ + Q+K + WV+KQ+ + G P
Sbjct: 208 MKSKTF---------NYRPFKHS----YNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDV 254
Query: 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409
TY +L+ + GK++ M + G + Y L L
Sbjct: 255 LTY------------NILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKG 302
Query: 410 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT 468
+ A+ + +K + P + +T LI G+++ C M K C P++
Sbjct: 303 NKPLAALTTLNHMKEV-GIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVC 361
Query: 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH 528
M+ Y + KAKE+F E T P+ +TY+SM+ A
Sbjct: 362 YTVMITGYVVSGELDKAKEMFREMTVKGQ-------------LPNVFTYNSMIRGLCMAG 408
Query: 529 QWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583
++ ++ K M GC + ++ L+ +AGK +++ G H
Sbjct: 409 EFREACWLLKEMESRGCNPNFVVYSTLVSYLRKAGKLSEARKVIREMVKKGHYVH 463
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/268 (19%), Positives = 104/268 (38%), Gaps = 24/268 (8%)
Query: 366 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425
+L++ F E G+ V M Q G TA + L C G + A++ K K+
Sbjct: 154 LLMKIFAECGEYKAMWRLVDEMVQDGFPTTARTFNLLICSCGEAGLAKQAVVQFMKSKTF 213
Query: 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSK 484
+ +P + ++ ++ S + +++ M +D P++ T N +L R +
Sbjct: 214 NY-RPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDR 272
Query: 485 AKELFEETTRANSS--GYTF------LSGDGAPLK--------------PDEYTYSSMLE 522
LF+E R S YT+ L PL P Y+++++
Sbjct: 273 FDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLID 332
Query: 523 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
+ A E +Y M +GC+ D + ++ +G+ + F + G++P
Sbjct: 333 GLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLP 392
Query: 583 HPLFFTEMLIQAIVQSNYEKAVALINAM 610
+ + M+ + + +A L+ M
Sbjct: 393 NVFTYNSMIRGLCMAGEFREACWLLKEM 420
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/438 (20%), Positives = 169/438 (38%), Gaps = 64/438 (14%)
Query: 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYG-------LKDKRDLK---- 226
+ + Q GL +M +K G S + VLD + G RD+K
Sbjct: 118 ISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGF 177
Query: 227 --SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284
+ F Y LL L K + A ++ + + + PD +Y +V ++ +VGL+KE
Sbjct: 178 EPNVFTYNVLLKALCKNNKVDGAKKLL-VEMSNKGCCPDAVSYTTVISSMCEVGLVKEGR 236
Query: 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
+L ER EP + VYNA++N H +KG F + +++ + G
Sbjct: 237 ELAER--------------------FEPVVSVYNALINGLCKEHDYKGAFELMREMVEKG 276
Query: 345 LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL-- 402
+ P+ +Y L+ G+I A + + M +RG L
Sbjct: 277 ISPNVISY------------STLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVK 324
Query: 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-H 461
C L G DA+ + ++ +P + + L+ G+I +S+F HM++
Sbjct: 325 GCFL--RGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIG 382
Query: 462 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 521
C PNI T +++ +++ A ++ + + P+ Y++M+
Sbjct: 383 CSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCC-------------PNVVVYTNMV 429
Query: 522 EASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 581
EA +++ E + + M+ C + AG+ E F + +
Sbjct: 430 EALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRC 489
Query: 582 PHPLFFTEMLIQAIVQSN 599
P + L+ + ++N
Sbjct: 490 PPNIVTYNELLDGLAKAN 507
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 45/249 (18%)
Query: 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ---KPSKR- 297
G +AL ++N M+ L P++ AY+++ G + + V + M + P+ R
Sbjct: 330 GTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRT 389
Query: 298 ----IKNMHRKN--------WDPVLE----PDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341
I ++ W+ +L P++VVY ++ A ++K + + +
Sbjct: 390 YGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMS 449
Query: 342 KSGLKPSAATY-----GLA--------------MESYRRCLLKV-----LVRAFWEEGKI 377
K PS T+ GL ME RC + L+ + +I
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRI 509
Query: 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTG 437
EA R + RGV ++S Y L CN G A+ +V K+ + P EIT
Sbjct: 510 EEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMM-VDGKSPDEITMNM 568
Query: 438 LIISSMDGG 446
+I++ G
Sbjct: 569 IILAYCKQG 577
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/407 (21%), Positives = 160/407 (39%), Gaps = 85/407 (20%)
Query: 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLML 255
L L K W QA+ V D L+++ + + Y KLL +LGK+G+P+ A ++F+ ML
Sbjct: 95 LSDLIAKKQWLQALEVFDM---LREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEML 151
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E+ L P + Y ++ + L+ + ++++M+ P +PD+
Sbjct: 152 EE-GLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ--------------CQPDVF 196
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y+ +L ACV + Q+ V ++K++ + + P+ T + + Y R G
Sbjct: 197 TYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV------------G 244
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
+ ++ + +M +V TA C W
Sbjct: 245 RFDQMEKVLSDM----LVSTA----------CKPDVW----------------------- 267
Query: 436 TGLIISSMDG--GHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492
T II S+ G G ID S ++ ++ EP T N ++ Y + M+ K + E
Sbjct: 268 TMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 327
Query: 493 TRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 552
+ T TY++++EA A + E + M G + D
Sbjct: 328 RKLEFPWTT-------------STYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTF 374
Query: 553 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599
L+ + AG H + + L EIP F +I A +++
Sbjct: 375 CCLINGYANAGLFHKVISSV-QLAAKFEIPENTAFYNAVISACAKAD 420
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/240 (19%), Positives = 97/240 (40%), Gaps = 39/240 (16%)
Query: 361 RCLL--------KVLVRAFWEEGK-------INEAVAAVRNMEQR--------GVVGTAS 397
RC+L V + W++G+ +N+ ++N++++ G V T +
Sbjct: 33 RCVLAASKSSPGSVTKKRLWKDGEFPGITEPVNQRRTPIKNVKKKLDRRSKANGWVNTVT 92
Query: 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 457
E L +W A+ V + ++ +P E T+ L++ G + +F
Sbjct: 93 ---ETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDE 149
Query: 458 M-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 516
M ++ EP + A+L Y+R+++ A + ++ +PD +T
Sbjct: 150 MLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQC------------QPDVFT 197
Query: 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576
YS++L+A A Q++ + +YK M + +L R G+ +E +L
Sbjct: 198 YSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDML 257
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 61/305 (20%), Positives = 115/305 (37%), Gaps = 48/305 (15%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL-LAILGKAGRPHEALRIFNLM 254
LLK D + ++D +Y D+R + V + L+ G+ GR + ++ + M
Sbjct: 201 LLKACVDASQF----DLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDM 256
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
L PD+ + + G +G + + E+ R N+ +EP+
Sbjct: 257 LVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFR-------------NFG--IEPET 301
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE 374
+N ++ + + + V + +RK + +TY ++ AF +
Sbjct: 302 RTFNILIGSYGKKRMYDKMSSVMEYMRKLEFPWTTSTYN------------NIIEAFADV 349
Query: 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI- 433
G M G+ + CCL N + +A L + I S++ + EI
Sbjct: 350 GDAKNMELTFDQMRSEGMKADTKTF----CCLING--YANAGLFHKVISSVQLAAKFEIP 403
Query: 434 ---TFTGLIISSMDGGHIDDCIS---IFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAK 486
F +IS+ DD I ++ MK+ C + T M++ Y + M K
Sbjct: 404 ENTAFYNAVISAC--AKADDLIEMERVYIRMKERQCVCDSRTFEIMVEAYEKEGMNDKIY 461
Query: 487 ELFEE 491
L +E
Sbjct: 462 YLEQE 466
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 98/424 (23%), Positives = 172/424 (40%), Gaps = 75/424 (17%)
Query: 223 RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG---QVGL 279
R ++SR TKL+ +L + GRPHEA +F + E + P + +Y ++ + Q G
Sbjct: 43 RTVRSR---TKLMNVLIERGRPHEAQTVFKTLAETGH-RPSLISYTTLLAAMTVQKQYGS 98
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
+ +V +E+ K D + +NAV+NA S + +
Sbjct: 99 ISSIVSEVEQSGTKL------------------DSIFFNAVINAFSESGNMEDAVQALLK 140
Query: 340 LRKSGLKPSAAT-------YGLAMESYRRCLL-------------------KVLVRAFWE 373
+++ GL P+ +T YG+A + R L VLV+A+ +
Sbjct: 141 MKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNIRTFNVLVQAWCK 200
Query: 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA-MLVVEKIKSLRHSKPLE 432
+ K+ EA V+ ME+ GV Y +A C G A VVEK+ +KP
Sbjct: 201 KKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVEKMVMKEKAKPNG 260
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNI----GTVNAMLKVYSRNDMFSKAKE 487
T ++ G + D + + MK+ E N+ +N ++V R D +
Sbjct: 261 RTCGIVVGGYCREGRVRDGLRFVRRMKEMRVEANLVVFNSLINGFVEVMDR-DGIDEVLT 319
Query: 488 LFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547
L +E +K D TYS+++ A ++A E V+K M +G +
Sbjct: 320 LMKECN----------------VKADVITYSTVMNAWSSAGYMEKAAQVFKEMVKAGVKP 363
Query: 548 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALI 607
D ++ L RA + E ++L+ P+ + FT ++ + + A+ +
Sbjct: 364 DAHAYSILAKGYVRAKEPKKAEELLETLIVESR-PNVVIFTTVISGWCSNGSMDDAMRVF 422
Query: 608 NAMA 611
N M
Sbjct: 423 NKMC 426
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 77/350 (22%), Positives = 140/350 (40%), Gaps = 58/350 (16%)
Query: 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM---RQKPS------------KRIK---- 299
+L PD+ Y ++ L +V + +++++ M R PS KR K
Sbjct: 292 DLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEA 351
Query: 300 -NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES 358
N+ ++ D + P+L VYNA++++ ++ +F ++ K GL+P+ TY + ++
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411
Query: 359 Y-RRCLLKV----------------------LVRAFWEEGKINEAVAAVRNMEQRGVVGT 395
+ RR L L+ + G I+ A + M + + T
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471
Query: 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIF 455
Y L C+ G+ A+ + ++ + P TFT L+ G I D + +F
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTG-KGIAPSIYTFTTLLSGLFRAGLIRDAVKLF 530
Query: 456 QHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE 514
M + + +PN T N M++ Y SKA E +E T + PD
Sbjct: 531 NEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKG-------------IVPDT 577
Query: 515 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
Y+Y ++ Q + G+ C+L++ + LL R GK
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 97/473 (20%), Positives = 188/473 (39%), Gaps = 75/473 (15%)
Query: 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248
+E + L++GL +G +A++++ V +L FVY L+ L K + HEA
Sbjct: 331 SEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNL---FVYNALIDSLCKGRKFHEAE 387
Query: 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQVG-------LLKELVKLIERMRQKPSKRIKNM 301
+F+ M L P+ Y + + G L E+V ++ P + N
Sbjct: 388 LLFDRM-GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Query: 302 HRKNWD-------------PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
H K D LEP +V Y +++ + ++ ++ G+ PS
Sbjct: 447 HCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPS 506
Query: 349 AATY----------GLAMESYR-------------RCLLKVLVRAFWEEGKINEAVAAVR 385
T+ GL ++ + R V++ + EEG +++A ++
Sbjct: 507 IYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLK 566
Query: 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445
M ++G+V Y L LC G+ +A + V+ + + + EI +TGL+
Sbjct: 567 EMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHK-GNCELNEICYTGLLHGFCRE 625
Query: 446 GHIDDCISIFQHMKDH-------CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSS 498
G +++ +S+ Q M C + ++ LK R F KE+ +
Sbjct: 626 GKLEEALSVCQEMVQRGVDLDLVCYGVL--IDGSLKHKDRKLFFGLLKEMHDRG------ 677
Query: 499 GYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 558
LKPD+ Y+SM++A + ++ ++ M GC ++ + ++
Sbjct: 678 -----------LKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVING 726
Query: 559 ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML-IQAIVQSNYEKAVALINAM 610
+AG + E + +P+ + + L I + + +KAV L NA+
Sbjct: 727 LCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAI 779
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/478 (19%), Positives = 180/478 (37%), Gaps = 61/478 (12%)
Query: 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219
+L+D R F+ M +GL + L+ G G A ++ +
Sbjct: 407 ILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEG---FMAEM 463
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
+K+ + YT L+ G+ ++ALR+++ M + P I + ++ L + GL
Sbjct: 464 INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK-GIAPSIYTFTTLLSGLFRAGL 522
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
+++ VKL M + W+ ++P+ V YN ++ F K+
Sbjct: 523 IRDAVKLFNEMAE-------------WN--VKPNRVTYNVMIEGYCEEGDMSKAFEFLKE 567
Query: 340 LRKSGLKPSAATY-----GLAMESYR-------------RCLLK-----VLVRAFWEEGK 376
+ + G+ P +Y GL + C L L+ F EGK
Sbjct: 568 MTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGK 627
Query: 377 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL--RHSKPLEIT 434
+ EA++ + M QRGV Y L + + + +D L +K + R KP ++
Sbjct: 628 LEEALSVCQEMVQRGVDLDLVCYGVL---IDGSLKHKDRKLFFGLLKEMHDRGLKPDDVI 684
Query: 435 FTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
+T +I + G + I+ M + C PN T A++ + ++A+ L +
Sbjct: 685 YTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQ 744
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553
+S P++ TY L+ L G + +
Sbjct: 745 PVSSV-------------PNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYN 791
Query: 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611
L+ R G+ ++ G P + +T M+ + +++ +KA+ L N+M
Sbjct: 792 MLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMT 849
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 76/390 (19%), Positives = 151/390 (38%), Gaps = 48/390 (12%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
+++G ++G +A +++ + +K + + Y L+ L G+ EA ++F L
Sbjct: 548 MIEGYCEEGDMSKA---FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVFVDGL 603
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
N + Y + + G L+E + + + M Q+ ++ DLV
Sbjct: 604 HKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRG---------------VDLDLV 648
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y +++ + K F + K++ GLKP Y ++ A + G
Sbjct: 649 CYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIY------------TSMIDAKSKTG 696
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
EA M G V Y + LC G +A ++ K++ + S P ++T+
Sbjct: 697 DFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPV-SSVPNQVTY 755
Query: 436 TGLIISSMDGGHID--DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
G + + G +D + + + N T N +++ + R +A EL
Sbjct: 756 -GCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELI---- 810
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553
T + GDG + PD TY++M+ + + ++ M G + D+ +
Sbjct: 811 -------TRMIGDG--VSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYN 861
Query: 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583
L+ AG+ + +L G IP+
Sbjct: 862 TLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
Score = 40.0 bits (92), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 45/239 (18%), Positives = 96/239 (40%), Gaps = 42/239 (17%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLK---- 365
L P++ +A+L+ V + +F + G++P Y + S C LK
Sbjct: 188 LLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSL--CELKDLSR 245
Query: 366 ---------------------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 404
VL+ ++ K+ EAV +++ + + Y L
Sbjct: 246 AKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVY 305
Query: 405 CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CE 463
LC ++ + +++++ LR S P E + L+ G I++ +++ + + D
Sbjct: 306 GLCKVQEFEIGLEMMDEMLCLRFS-PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVS 364
Query: 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 522
PN+ NA++ + F +A+ LF+ + L+P++ TYS +++
Sbjct: 365 PNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG-------------LRPNDVTYSILID 410
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/377 (20%), Positives = 163/377 (43%), Gaps = 48/377 (12%)
Query: 181 MNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK-SRFVYTKLLAILG 239
M + G+ E L+ + G W A VL + + D++ + FV+++LLA
Sbjct: 365 MEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEM----EAGDVQPNSFVFSRLLAGFR 420
Query: 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299
G + ++ M + + PD Y+ V T G+ L + +RM +
Sbjct: 421 DRGEWQKTFQVLKEM-KSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG----- 474
Query: 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359
+EPD V +N +++ + +F+ + + G P A TY + + SY
Sbjct: 475 ----------IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSY 524
Query: 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419
+ W++ K + M+ +G++ + L +GR+ DA+ +
Sbjct: 525 GD-------QERWDDMK-----RLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECL 572
Query: 420 EKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSR 478
E++KS+ KP + LI + G + ++ F+ M D +P++ +N+++ +
Sbjct: 573 EEMKSV-GLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGE 631
Query: 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538
+ ++A + + ++ +G +KPD TY+++++A +++ VY+
Sbjct: 632 DRRDAEAFAVLQ-----------YMKENG--VKPDVVTYTTLMKALIRVDKFQKVPVVYE 678
Query: 539 GMALSGCQLDQTKHAWL 555
M +SGC+ D+ + L
Sbjct: 679 EMIMSGCKPDRKARSML 695
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 85/395 (21%), Positives = 151/395 (38%), Gaps = 48/395 (12%)
Query: 220 KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
+DK +L + V ++ K+G P +AL++ M + L A S+ L G
Sbjct: 262 RDKLELDVQLVNDIIMG-FAKSGDPSKALQLLG-MAQATGLSAKTATLVSIISALADSGR 319
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
E L E +RQ K P YNA+L V + K + +
Sbjct: 320 TLEAEALFEELRQSGIK---------------PRTRAYNALLKGYVKTGPLKDAESMVSE 364
Query: 340 LRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399
+ K G+ P TY L +++Y WE +I ++ ME V + V+
Sbjct: 365 MEKRGVSPDEHTYSLLIDAYVNA-------GRWESARI-----VLKEMEAGDVQPNSFVF 412
Query: 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH-IDDCISIFQHM 458
L + G WQ V++++KS+ KP + F ++I + + +D ++ F M
Sbjct: 413 SRLLAGFRDRGEWQKTFQVLKEMKSI-GVKP-DRQFYNVVIDTFGKFNCLDHAMTTFDRM 470
Query: 459 -KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 517
+ EP+ T N ++ + ++ A+E+FE R P TY
Sbjct: 471 LSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGC-------------LPCATTY 517
Query: 518 SSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577
+ M+ + +W+ + + M G + H L+ ++G+ + + +
Sbjct: 518 NIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKS 577
Query: 578 AGEIPHPLFFTEMLIQAIVQSNY-EKAVALINAMA 611
G P + LI A Q E+AV M
Sbjct: 578 VGLKPSSTMYNA-LINAYAQRGLSEQAVNAFRVMT 611
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 117/299 (39%), Gaps = 50/299 (16%)
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC------------ 362
+ YNA++ AC ++ + + ++R+ G + Y L ++S R
Sbjct: 198 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 257
Query: 363 -------------LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409
L+ ++ F + G ++A+ + + G+ + + L ++
Sbjct: 258 KEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADS 317
Query: 410 GRWQDAMLVVEKIKSLRHS--KPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNI 466
GR +A + E+ LR S KP + L+ + G + D S+ M K P+
Sbjct: 318 GRTLEAEALFEE---LRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDE 374
Query: 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526
T + ++ Y + A+ + +E +GD ++P+ + +S +L
Sbjct: 375 HTYSLLIDAYVNAGRWESARIVLKEME----------AGD---VQPNSFVFSRLLAGFRD 421
Query: 527 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA---FDSLLEAGEIP 582
+W+ V K M G + D+ + V GK + L+HA FD +L G P
Sbjct: 422 RGEWQKTFQVLKEMKSIGVKPDRQFYN---VVIDTFGKFNCLDHAMTTFDRMLSEGIEP 477
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 123/302 (40%), Gaps = 27/302 (8%)
Query: 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVR 369
EPD+V + +++N ++ + + Q+ + G+KP Y ++
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMY------------TTIID 185
Query: 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429
+ + G +N A++ ME G+ +Y L LCN+GRW+DA ++ + R K
Sbjct: 186 SLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK-RKIK 244
Query: 430 PLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488
P ITF LI + + G D ++ M + PNI T +++ + +A+++
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304
Query: 489 FEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548
F + G PD Y+S++ + + ++ M+ G +
Sbjct: 305 F-----------YLMETKGC--FPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGN 351
Query: 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608
+ L+ + GK ++ + F ++ G P+ + +L +KA+ +
Sbjct: 352 TITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFE 411
Query: 609 AM 610
M
Sbjct: 412 DM 413
Score = 70.1 bits (170), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 81/385 (21%), Positives = 150/385 (38%), Gaps = 51/385 (13%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
+T L+ R EA+ + N M+E + PD+ Y ++ +L + G + + L ++M
Sbjct: 145 FTSLINGFCLGNRMEEAMSMVNQMVE-MGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM 203
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
+N+ + PD+V+Y +++N S +W+ + + + K +KP
Sbjct: 204 -------------ENYG--IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248
Query: 351 TYGLAMESYRR-----------------------CLLKVLVRAFWEEGKINEAVAAVRNM 387
T+ ++++ + L+ F EG ++EA M
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308
Query: 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 447
E +G Y L C + DAM + ++ S + IT+T LI G
Sbjct: 309 ETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEM-SQKGLTGNTITYTTLIQGFGQVGK 367
Query: 448 IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 506
+ +F HM PNI T N +L N KA +FE+ + G
Sbjct: 368 PNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG------- 420
Query: 507 GAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 566
+ P+ +TY+ +L + E V++ M + + ++ +AGK
Sbjct: 421 ---VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVK 477
Query: 567 LLEHAFDSLLEAGEIPHPLFFTEML 591
+ F SL G P+ + +T M+
Sbjct: 478 NAVNLFCSLPSKGVKPNVVTYTTMI 502
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/350 (21%), Positives = 128/350 (36%), Gaps = 85/350 (24%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+ GL + G WR A S+L + K K D+ + + L+ K G+ +A ++N M+
Sbjct: 218 LVNGLCNSGRWRDADSLLRGMTKRKIKPDVIT---FNALIDAFVKEGKFLDAEELYNEMI 274
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
++ P+I Y S+ G + E ++ M K PD+V
Sbjct: 275 R-MSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGC---------------FPDVV 318
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
Y +++N + +F ++ + GL + TY L++ F + G
Sbjct: 319 AYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITY------------TTLIQGFGQVG 366
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
K N A +M RGV Y L CLC NG+ + A+++ E ++
Sbjct: 367 KPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQK----------- 415
Query: 436 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE---- 491
MDG PNI T N +L N KA +FE+
Sbjct: 416 -----REMDG----------------VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKR 454
Query: 492 ------------------TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
+ ++ F S +KP+ TY++M+
Sbjct: 455 EMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISG 504
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 86/207 (41%), Gaps = 25/207 (12%)
Query: 217 YGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276
Y + K + YT L+ G+ G+P+ A +F+ M+ + P+I Y+ + L
Sbjct: 341 YEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSR-GVPPNIRTYNVLLHCLCY 399
Query: 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWV 336
G +K+ + + E +M ++ D V P++ YN +L+ + + + V
Sbjct: 400 NGKVKKALMIFE-----------DMQKREMDGV-APNIWTYNVLLHGLCYNGKLEKALMV 447
Query: 337 FKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396
F+ +RK + TY + ++ + GK+ AV ++ +GV
Sbjct: 448 FEDMRKREMDIGIITYTIIIQ------------GMCKAGKVKNAVNLFCSLPSKGVKPNV 495
Query: 397 SVYYELACCLCNNGRWQDAMLVVEKIK 423
Y + L G +A ++ K+K
Sbjct: 496 VTYTTMISGLFREGLKHEAHVLFRKMK 522
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 96/450 (21%), Positives = 170/450 (37%), Gaps = 69/450 (15%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVY--GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL 253
L+ GL G A+ ++D + G + + Y +L ++ K+G+ A+ +
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQ-----PNEVTYGPVLNVMCKSGQTALAMELLRK 253
Query: 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313
M E+ N+ D Y + L + G L L M K K D
Sbjct: 254 M-EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK---------------AD 297
Query: 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE 373
++ YN ++ + +W + + + K + P+ T+ VL+ +F +
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTF------------SVLIDSFVK 345
Query: 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 433
EGK+ EA ++ M QRG+ Y L C R ++A+ +V+ + S + P +
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMIS-KGCDPDIM 404
Query: 434 TFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492
TF LI IDD + +F+ M N T N +++ + ++ AK+LF+E
Sbjct: 405 TFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEM 464
Query: 493 ----TRANSSGYTFLSGDG-------------------APLKPDEYTYS----SMLEASA 525
R + Y L DG + ++ D Y M AS
Sbjct: 465 VSRRVRPDIVSYKILL-DGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASK 523
Query: 526 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 585
W+ F + L G +LD + ++ E R + F + E G P L
Sbjct: 524 VDDAWDLF----CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDEL 579
Query: 586 FFTEMLIQAIVQSNYEKAVALINAMAYAPF 615
+ ++ + + A LI M + F
Sbjct: 580 TYNILIRAHLGDDDATTAAELIEEMKSSGF 609
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/379 (20%), Positives = 151/379 (39%), Gaps = 45/379 (11%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
++ LL L R EAL + + M+E + P + +++ L G + + V LI+R
Sbjct: 160 IFNTLLNGLCLECRVSEALELVDRMVEMGH-KPTLITLNTLVNGLCLNGKVSDAVVLIDR 218
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M + +P+ V Y VLN S Q + +++ + +K A
Sbjct: 219 MVETG---------------FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDA 263
Query: 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409
Y +++ ++G ++ A ME +G Y L CN
Sbjct: 264 VKY------------SIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNA 311
Query: 410 GRWQD-AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIG 467
GRW D A L+ + IK R P +TF+ LI S + G + + + + M PN
Sbjct: 312 GRWDDGAKLLRDMIK--RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTI 369
Query: 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 527
T N+++ + + + +A ++ + + G PD T++ ++ A
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMVD-----------LMISKGC--DPDIMTFNILINGYCKA 416
Query: 528 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587
++ + +++ M+L G + + L+ ++GK + + F ++ P + +
Sbjct: 417 NRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSY 476
Query: 588 TEMLIQAIVQSNYEKAVAL 606
+L EKA+ +
Sbjct: 477 KILLDGLCDNGELEKALEI 495
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/323 (16%), Positives = 128/323 (39%), Gaps = 38/323 (11%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC--------- 362
P ++ +N + +A + Q++ V + KQ+ G+ S T + + + RC
Sbjct: 86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145
Query: 363 --------------LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408
+ L+ E +++EA+ V M + G T L LC
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205
Query: 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIG 467
NG+ DA+++++++ +P E+T+ ++ G + + + M++ + + +
Sbjct: 206 NGKVSDAVVLIDRMVETGF-QPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAV 264
Query: 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 527
+ ++ ++ A LF E G+ K D TY++++ A
Sbjct: 265 KYSIIIDGLCKDGSLDNAFNLFNEM---EIKGF----------KADIITYNTLIGGFCNA 311
Query: 528 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587
+W+ + + M + + L+ + GK + +++ G P+ + +
Sbjct: 312 GRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITY 371
Query: 588 TEMLIQAIVQSNYEKAVALINAM 610
++ ++ E+A+ +++ M
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLM 394
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 111/530 (20%), Positives = 197/530 (37%), Gaps = 118/530 (22%)
Query: 117 KEMFEKDLNWVLDDDVQLGSDYFA-------KNVEWHPEKRWRSEAEAIRVLVDRLSE-- 167
KE+F + LN ++ + GS A K+ + P + + + DRL
Sbjct: 196 KEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSAS 255
Query: 168 ---REMTAKNWKFVRIMNQSGLMFTEGQMLKLLK-GLGDKGSWRQAMSVLDWVYGLKDKR 223
REM+ N + +G L+ L G WR+A+++++ + D
Sbjct: 256 LIHREMSLANLRM------------DGFTLRCFAYSLCKVGKWREALTLVETENFVPDT- 302
Query: 224 DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKEL 283
YTKL++ L +A EA+ N M L P++ Y ++ L
Sbjct: 303 -----VFYTKLISGLCEASLFEEAMDFLNRMRATSCL-PNVVTYSTL------------L 344
Query: 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343
+ + + KR+ NM P ++N++++A S + + K++ K
Sbjct: 345 CGCLNKKQLGRCKRVLNMMMMEG---CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKC 401
Query: 344 GLKPSAATYG-------------------LAMESYRRCLLKVLV----------RAFWEE 374
G P Y LA ++Y L +V R
Sbjct: 402 GHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSA 461
Query: 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI- 433
GK +A + +R M +G + S Y ++ LCN + + A L+ E++K R ++
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMK--RGGLVADVY 519
Query: 434 TFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFE-- 490
T+T ++ S G I+ F M++ C PN+ T A++ Y + S A ELFE
Sbjct: 520 TYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579
Query: 491 --ETTRANSSGYT----------------------------------FLSGDGAPLKPDE 514
E N Y+ F D +P+
Sbjct: 580 LSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNV 639
Query: 515 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564
TY ++L+ +H+ E + M++ GC+ +Q + L+ + GK
Sbjct: 640 VTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK 689
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 81/415 (19%), Positives = 144/415 (34%), Gaps = 50/415 (12%)
Query: 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR 297
L K G+ EAL ++E N PD Y + L + L +E + + RMR
Sbjct: 280 LCKVGKWREALT----LVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCL- 334
Query: 298 IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357
P++V Y+ +L C+ Q V + G PS +
Sbjct: 335 --------------PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIF----- 375
Query: 358 SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 417
LV A+ G + A ++ M + G + VY L +C + + L
Sbjct: 376 -------NSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDL 428
Query: 418 VVEKIKSLRHSKPLEITFTGLIISSM-----DGGHIDDCISIFQHMKDH-CEPNIGTVNA 471
+ K+ + + +SS G + S+ + M P+ T +
Sbjct: 429 LDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSK 488
Query: 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 531
+L A LFEE R L D YTY+ M+++ A E
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGG-------------LVADVYTYTIMVDSFCKAGLIE 535
Query: 532 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+ M GC + + L+ +A K F+++L G +P+ + ++ ++
Sbjct: 536 QARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALI 595
Query: 592 IQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 646
EKA + M + + + ++ N +R + LL+ C
Sbjct: 596 DGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFC 650
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 74/348 (21%), Positives = 125/348 (35%), Gaps = 66/348 (18%)
Query: 316 VYNAVLNACVPSHQWKGVFWV----FKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAF 371
V+ LN V H G F + +L+ +PS +TY L++AF
Sbjct: 198 VFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTY------------NCLIQAF 245
Query: 372 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431
+ +++ A R M + A LC G+W++A+ +VE + P
Sbjct: 246 LKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVET----ENFVPD 301
Query: 432 EITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGTVNAMLKVYSRNDMFSKAKELFE 490
+ +T LI + ++ + M+ C PN+ T + +L + K +
Sbjct: 302 TVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVL- 360
Query: 491 ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 550
+ +G P ++S++ A T+ Y + K M G
Sbjct: 361 ----------NMMMMEGC--YPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYV 408
Query: 551 KHAWLLVEASRAG-----KCHLL---EHAFDSLLEAGEIPHPL---FFTEMLIQAIVQSN 599
+ L+ S G C LL E A+ +L AG + + + FT L A
Sbjct: 409 VYNILI--GSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSA---GK 463
Query: 600 YEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCN 647
YEKA ++I M F ++ K+LN LCN
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYS----------------KVLNYLCN 495
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/263 (18%), Positives = 108/263 (41%), Gaps = 32/263 (12%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
+YT+++ L K G+ EA ++ +M E+ P++ Y ++ G +G ++ ++L+ER
Sbjct: 746 IYTEMIDGLCKVGKTDEAYKLMQMM-EEKGCQPNVVTYTAMIDGFGMIGKIETCLELLER 804
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M K + P+ V Y +++ C + + ++++++
Sbjct: 805 MGSKG---------------VAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHT 849
Query: 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409
A Y +E + + + E++ + + Q SVY L L
Sbjct: 850 AGYRKVIEGFNK--------------EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKA 895
Query: 410 GRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIG 467
R + A+ ++E++ + + T+ LI S ++ +F M K P +
Sbjct: 896 QRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQ 955
Query: 468 TVNAMLKVYSRNDMFSKAKELFE 490
+ +++K RN S+A L +
Sbjct: 956 SFCSLIKGLFRNSKISEALLLLD 978
Score = 40.0 bits (92), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 99/263 (37%), Gaps = 50/263 (19%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-------------VYTKLLAILGKAG 242
L+ G G +A + + + G KD D+ F Y LL K+
Sbjct: 594 LIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSH 653
Query: 243 RPHEALRIFNLM-LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM----------- 290
R EA ++ + M +E C P+ Y ++ L +VG L E ++ M
Sbjct: 654 RVEEARKLLDAMSMEGCE--PNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 711
Query: 291 ------RQKPSKRIKNMHRKNWDPVLE----PDLVVYNAVLNACVPSHQWKGVFWVFKQL 340
R KR +++ K +LE P++V+Y +++ + + + + +
Sbjct: 712 YSSLIDRYFKVKR-QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 770
Query: 341 RKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYY 400
+ G +P+ TY ++ F GKI + + M +GV Y
Sbjct: 771 EEKGCQPNVVTY------------TAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 401 ELACCLCNNGRWQDAMLVVEKIK 423
L C NG A ++E++K
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMK 841
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/282 (20%), Positives = 118/282 (41%), Gaps = 27/282 (9%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
+PDLV Y V+N + K++ K ++ Y ++
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIY------------NTIIDG 267
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ +++A+ M+ +G+ Y L CLCN GRW DA ++ + R P
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE-RKINP 326
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELF 489
+TF+ LI + + G + + ++ M K +P+I T ++++ + +D +AK +F
Sbjct: 327 NVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMF 386
Query: 490 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549
E +S D P+ TYS++++ A + E +++ M+ G +
Sbjct: 387 E----------LMISKD---CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 433
Query: 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+ L+ +A C + F ++ G P+ L + +L
Sbjct: 434 VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILL 475
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/388 (19%), Positives = 144/388 (37%), Gaps = 78/388 (20%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
F Y+ L++ L GR +A R+ + M+E + P++ + ++ + G L E KL +
Sbjct: 294 FTYSSLISCLCNYGRWSDASRLLSDMIER-KINPNVVTFSALIDAFVKEGKLVEAEKLYD 352
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
M ++ ++PD+ Y++++N + +F+ + P+
Sbjct: 353 EMIKRS---------------IDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408
TY L++ F + ++ E + R M QRG+VG
Sbjct: 398 VVTY------------STLIKGFCKAKRVEEGMELFREMSQRGLVGNT------------ 433
Query: 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIG 467
+T+T LI D+ +F+ M PNI
Sbjct: 434 ------------------------VTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNIL 469
Query: 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 527
T N +L +N +KA +FE R+ ++PD YTY+ M+E A
Sbjct: 470 TYNILLDGLCKNGKLAKAMVVFEYLQRST-------------MEPDIYTYNIMIEGMCKA 516
Query: 528 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587
+ E ++ ++L G + + ++ R G + + E G +P+ +
Sbjct: 517 GKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576
Query: 588 TEMLIQAIVQSNYEKAVALINAMAYAPF 615
++ + + E + LI M F
Sbjct: 577 NTLIRARLRDGDREASAELIKEMRSCGF 604
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/304 (19%), Positives = 123/304 (40%), Gaps = 36/304 (11%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
EPD+V +++LN S + + Q+ + G KP T+ L+
Sbjct: 150 EPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTF------------TTLIHG 197
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ K +EAVA V M QRG Y + LC G A+ +++K++ +
Sbjct: 198 LFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEAD 257
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELF 489
+ + + +I H+DD +++F M + P++ T ++++ +S A L
Sbjct: 258 V-VIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLL 316
Query: 490 EETT--RANSSGYTFLSGDGAPLK--------------------PDEYTYSSMLEASATA 527
+ + N + TF + A +K PD +TYSS++
Sbjct: 317 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 376
Query: 528 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587
+ + +++++ M C + ++ L+ +A + F + + G + + + +
Sbjct: 377 DRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 436
Query: 588 TEML 591
T ++
Sbjct: 437 TTLI 440
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/331 (21%), Positives = 133/331 (40%), Gaps = 42/331 (12%)
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
PD + ++ L E V LI+RM Q+ +PDLV Y AV+
Sbjct: 181 PDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGC---------------QPDLVTYGAVV 225
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381
N + ++ + ++ + Y ++S L + E+ +A+
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS--------LCKYRHED----DAL 273
Query: 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441
ME +GV Y L CLCN GRW DA ++ + R P +TF+ LI +
Sbjct: 274 NLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIE-RKINPNLVTFSALIDA 332
Query: 442 SMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGY 500
+ G + +++ M K +PNI T ++++ + D +AK++ E R +
Sbjct: 333 FVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDC--- 389
Query: 501 TFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560
P+ TY++++ A + + +++ M+ G + + L+
Sbjct: 390 ----------LPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFF 439
Query: 561 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEML 591
+A C + F ++ G P+ L + +L
Sbjct: 440 QARDCDNAQMVFKQMVSVGVHPNILTYNILL 470
Score = 63.5 bits (153), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 140/337 (41%), Gaps = 46/337 (13%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
++ GL +G A+++L+ + K + ++ +Y+ ++ L K +AL +F M
Sbjct: 224 VVNGLCKRGDTDLALNLLNKMEAAKIEANV---VIYSTVIDSLCKYRHEDDALNLFTEM- 279
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E+ + P++ Y S+ L G + +L+ M + RK + P+LV
Sbjct: 280 ENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM----------IERK-----INPNLV 324
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375
++A+++A V + +++++ K + P+ TY L+ F
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY------------SSLINGFCMLD 372
Query: 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435
++ EA + M ++ + Y L C R M + ++ S R +T+
Sbjct: 373 RLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREM-SQRGLVGNTVTY 431
Query: 436 TGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494
T LI D+ +F+ M PNI T N +L +N +KA +FE R
Sbjct: 432 TTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQR 491
Query: 495 ANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 531
+ ++PD YTY+ M+E A +W+
Sbjct: 492 ST-------------MEPDIYTYNIMIEGMCKAGKWK 515
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 103/251 (41%), Gaps = 16/251 (6%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
EPD+V N++LN ++ + Q+ + G KP T+ L+
Sbjct: 145 EPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTF------------TTLIHG 192
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
+ K +EAVA + M QRG Y + LC G A+ ++ K+++ +
Sbjct: 193 LFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEAN 252
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELF 489
+ I ++ +I S H DD +++F M++ PN+ T ++++ +S A L
Sbjct: 253 VVI-YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLL 311
Query: 490 EETT--RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547
+ + N + TF + A +K + + L + + Y + C L
Sbjct: 312 SDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCML 371
Query: 548 DQTKHAWLLVE 558
D+ A ++E
Sbjct: 372 DRLGEAKQMLE 382
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/391 (20%), Positives = 161/391 (41%), Gaps = 51/391 (13%)
Query: 219 LKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG 278
+K + + + YT ++ +G+ G+ EA+ +FN M+ + L ++ Y+++ L +
Sbjct: 261 MKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITE-GLTLNVVGYNTLMQVLAKGK 319
Query: 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW---KGVFW 335
++ + +++ RM + + P+ Y+ +LN V Q GV
Sbjct: 320 MVDKAIQVFSRMVETGCR---------------PNEYTYSLLLNLLVAEGQLVRLDGVVE 364
Query: 336 VFKQLRKSG----LKPSAATYGLAMESYR-------------RCLLKVLVRAFWEEGKIN 378
+ K+ G L + + G E++R R ++ + GK
Sbjct: 365 ISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTI 424
Query: 379 EAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL 438
EA+ + + ++GVV +Y + L + + EK+K S P T+ L
Sbjct: 425 EAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPS-PDIFTYNIL 483
Query: 439 IISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497
I S G +D+ I+IF+ + + C+P+I + N+++ +N +A F+E
Sbjct: 484 IASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKG- 542
Query: 498 SGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLV 557
L PD TYS+++E + E +++ M + GCQ + + LL
Sbjct: 543 ------------LNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLD 590
Query: 558 EASRAGKCHLLEHAFDSLLEAGEIPHPLFFT 588
+ G+ + + + G P + +T
Sbjct: 591 CLEKNGRTAEAVDLYSKMKQQGLTPDSITYT 621
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 47/227 (20%)
Query: 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIF-NLMLEDCNLYP 262
G +Q + D +K F Y L+A G+ G EA+ IF L DC P
Sbjct: 453 GKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCK--P 510
Query: 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322
DI +Y+S+ LG+ G + E R K M K L PD+V Y+ ++
Sbjct: 511 DIISYNSLINCLGKNGDVDE-----------AHVRFKEMQEKG----LNPDVVTYSTLME 555
Query: 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVA 382
+ + + + +F+++ G +P+ TY + ++ CL K G+ EAV
Sbjct: 556 CFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLD----CLEK--------NGRTAEAVD 603
Query: 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429
M+Q+G+ + Y V+E+++S+ H K
Sbjct: 604 LYSKMKQQGLTPDSITY-----------------TVLERLQSVSHGK 633
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/441 (20%), Positives = 177/441 (40%), Gaps = 53/441 (12%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
F Y L+ AG AL +F+ M E P++ Y+++ ++ + + KL+
Sbjct: 206 FTYNILIRGFCFAGNIDVALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLR 264
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
M K LEP+L+ YN V+N + K V +V ++ + G
Sbjct: 265 SMALKG---------------LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLD 309
Query: 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408
TY L++ + +EG ++A+ M + G+ + Y L +C
Sbjct: 310 EVTY------------NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCK 357
Query: 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIG 467
G AM +++++ +R P E T+T L+ G++++ + + M D+ P++
Sbjct: 358 AGNMNRAMEFLDQMR-VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 468 TVNAMLKVYSRN----DMFSKAKELFEETTRANSSGY-TFLSG-------DGA------- 508
T NA++ + D + +++ E+ + Y T LSG D A
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 509 ---PLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565
+KPD TYSS+++ + + +Y+ M G D+ + L+ G
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 566 HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625
+ ++E G +P + ++ ++ QS +A L+ + Y ++ + L
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 626 FESNEDRISRDKLEKLLNALC 646
E N I + L+ C
Sbjct: 597 IE-NCSNIEFKSVVSLIKGFC 616
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/382 (19%), Positives = 157/382 (41%), Gaps = 51/382 (13%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L++G G+ A+++ D ++ K L + Y L+ K + + ++ M
Sbjct: 211 LIRGFCFAGNIDVALTLFD---KMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMA 267
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP--------SKRIKN------- 300
L P++ +Y+ V L + G +KE+ ++ M ++ + IK
Sbjct: 268 LK-GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNF 326
Query: 301 -----MHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355
MH + L P ++ Y +++++ + Q+R GL P+ TY
Sbjct: 327 HQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY--- 383
Query: 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415
LV F ++G +NEA +R M G + Y L C G+ +DA
Sbjct: 384 ---------TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDA 434
Query: 416 MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLK 474
+ V+E +K + P ++++ ++ +D+ + + + M + +P+ T +++++
Sbjct: 435 IAVLEDMKE-KGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFE 534
+ +A +L+EE R G P PDE+TY++++ A E
Sbjct: 494 GFCEQRRTKEACDLYEEMLRV-----------GLP--PDEFTYTALINAYCMEGDLEKAL 540
Query: 535 YVYKGMALSGCQLDQTKHAWLL 556
++ M G D ++ L+
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLI 562
Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 96/456 (21%), Positives = 171/456 (37%), Gaps = 77/456 (16%)
Query: 168 REMTAKNWKFVRI-MNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWV--YGLKDKRD 224
RE K FV MN+ G E L+KG +G++ QA+ + + +GL
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT---- 342
Query: 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284
S YT L+ + KAG + A+ + M L P+ Y ++ Q G + E
Sbjct: 343 -PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEAY 400
Query: 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344
+++ M D P +V YNA++N + + + V + +++ G
Sbjct: 401 RVLREMN---------------DNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 345 LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC 404
L P +Y ++ F ++EA+ R M ++G+ Y L
Sbjct: 446 LSPDVVSYS------------TVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 405 CLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-C 462
C R ++A + E++ LR P E T+T LI + G ++ + + M +
Sbjct: 494 GFCEQRRTKEACDLYEEM--LRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGV 551
Query: 463 EPNIGTVNAMLKVYSRNDMFSKAKEL-----FEETTRANSSGYT---------------- 501
P++ T + ++ ++ +AK L +EE+ ++ + +T
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSL 611
Query: 502 ----------------FLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 545
F S G KPD Y+ M+ A +YK M SG
Sbjct: 612 IKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGF 671
Query: 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI 581
L L+ + GK + L +L + E+
Sbjct: 672 LLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCEL 707
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 121/308 (39%), Gaps = 37/308 (12%)
Query: 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220
LVD S++ + ++ +R MN +G + L+ G G A++VL+ +K
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLE---DMK 442
Query: 221 DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280
+K Y+ +L+ ++ EALR+ M+E + PD Y S+ +
Sbjct: 443 EKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK-GIKPDTITYSSLIQGFCEQRRT 501
Query: 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340
KE L E M + L PD Y A++NA + + ++
Sbjct: 502 KEACDLYEEMLRVG---------------LPPDEFTYTALINAYCMEGDLEKALQLHNEM 546
Query: 341 RKSGLKPSAATY-----GLAMESYRRCLLKVLVRAFWEEGKINEA-----VAAVRNMEQR 390
+ G+ P TY GL +S R ++L++ F+EE ++ + N+E +
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFK 606
Query: 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450
VV + C G +A V E + H KP + +I G I
Sbjct: 607 SVVSLIKGF-------CMKGMMTEADQVFESMLGKNH-KPDGTAYNIMIHGHCRAGDIRK 658
Query: 451 CISIFQHM 458
++++ M
Sbjct: 659 AYTLYKEM 666
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/389 (19%), Positives = 147/389 (37%), Gaps = 97/389 (24%)
Query: 312 PDLVVYNAVLNACVPSHQWKGVFW-VFKQLRKSGLKPSAATYGLAMESY----------- 359
P ++ YNAVL+A + S + VFK++ +S + P+ TY + + +
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226
Query: 360 -------RRCLLKV-----LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLC 407
+ CL V L+ + + KI++ +R+M +G+ Y + LC
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286
Query: 408 NNGRWQDAMLVVEKI---------------------------------KSLRHS-KPLEI 433
GR ++ V+ ++ + LRH P I
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346
Query: 434 TFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
T+T LI S G+++ + M+ C PN T ++ +S+ ++A + E
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYMNEAYRVLRE 405
Query: 492 TTRANSSGYT--------FLSGDGAP-----------------LKPDEYTYSSMLEASAT 526
N +G++ ++G L PD +YS++L
Sbjct: 406 ---MNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462
Query: 527 AHQWEYFEYVYKGMALSGCQLDQTKHAWLL---VEASRAGK-CHLLEHAFDSLLEAGEIP 582
++ + V + M G + D ++ L+ E R + C L ++ +L G P
Sbjct: 463 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDL----YEEMLRVGLPP 518
Query: 583 HPLFFTEMLIQAIVQSNYEKAVALINAMA 611
+T ++ ++ + EKA+ L N M
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMV 547
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 79/202 (39%), Gaps = 20/202 (9%)
Query: 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKEL 488
P T+ LI G+ID +++F M+ C PN+ T N ++ Y +
Sbjct: 203 PNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK---------- 252
Query: 489 FEETTRANSSGYTFLSGDGAP-LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547
R G+ L L+P+ +Y+ ++ + + +V M G L
Sbjct: 253 ----LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL 308
Query: 548 DQTKHAWLLVEASRAGKCH--LLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVA 605
D+ + L+ + G H L+ HA +L G P + +T ++ N +A+
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHA--EMLRHGLTPSVITYTSLIHSMCKAGNMNRAME 366
Query: 606 LINAMAYAPFHITERQWTELFE 627
++ M ER +T L +
Sbjct: 367 FLDQMRVRGLCPNERTYTTLVD 388
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 47/298 (15%)
Query: 304 KNWDPVL------------EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351
K WD ++ +PD++ +N +++A Q+K ++ QL +S P+ T
Sbjct: 133 KKWDSIILVCEWILRKSSFQPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDT 192
Query: 352 YGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV----VGTASVYYELACCLC 407
Y L L++A+ G I A + M+ V +G + +
Sbjct: 193 YAL------------LIKAYCMAGLIERAEVVLVEMQNHHVSPKTIGVTVYNAYIEGLMK 240
Query: 408 NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS--IFQHMKDH-CEP 464
G ++A+ V +++K R KP T+ +I ++ G +S ++ M+ H C+P
Sbjct: 241 RKGNTEEAIDVFQRMKRDR-CKPTTETYNLMI--NLYGKASKSYMSWKLYCEMRSHQCKP 297
Query: 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS 524
NI T A++ ++R + KA+E+FE+ L DG L+PD Y Y++++E+
Sbjct: 298 NICTYTALVNAFAREGLCEKAEEIFEQ-----------LQEDG--LEPDVYVYNALMESY 344
Query: 525 ATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582
+ A ++ M GC+ D+ + ++ RAG E F+ + G P
Sbjct: 345 SRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAP 402
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 145/362 (40%), Gaps = 52/362 (14%)
Query: 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE-DCNLY 261
KG+ +A+ V +K R + Y ++ + GKA + + + +++ M C
Sbjct: 242 KGNTEEAIDVFQR---MKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCK-- 296
Query: 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321
P+I Y ++ + GL ++ ++ E++++ LEPD+ VYNA++
Sbjct: 297 PNICTYTALVNAFAREGLCEKAEEIFEQLQEDG---------------LEPDVYVYNALM 341
Query: 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381
+ + G +F ++ G +P A+Y + +++Y R L A +EE
Sbjct: 342 ESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEE------- 394
Query: 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441
M++ G+ T + L L + +D +K + + TF +
Sbjct: 395 -----MKRLGIAPTMKSHMLL---LSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSML 446
Query: 442 SMDG--GHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSS 498
++ G G I M++ C +I T N ++ +Y + + +ELF E N
Sbjct: 447 NLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKN-- 504
Query: 499 GYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 558
+PD T++S + A + + V++ M SGC D LL
Sbjct: 505 -----------FRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSA 553
Query: 559 AS 560
S
Sbjct: 554 CS 555
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/280 (20%), Positives = 105/280 (37%), Gaps = 44/280 (15%)
Query: 336 VFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 395
VF+++++ KP+ TY L + Y + + + E + ++ +
Sbjct: 251 VFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNI----------- 299
Query: 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH---IDDCI 452
Y L G + A + E+++ +P + L+ S G+ +
Sbjct: 300 -CTYTALVNAFAREGLCEKAEEIFEQLQE-DGLEPDVYVYNALMESYSRAGYPYGAAEIF 357
Query: 453 SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS-----------SGYT 501
S+ QHM CEP+ + N M+ Y R + S A+ +FEE R S Y+
Sbjct: 358 SLMQHM--GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYS 415
Query: 502 F-------------LSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548
+S +G ++PD + +SML Q+ E + M C D
Sbjct: 416 KARDVTKCEAIVKEMSENG--VEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTAD 473
Query: 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT 588
+ + L+ +AG +E F L E P + +T
Sbjct: 474 ISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWT 513
Score = 36.6 bits (83), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 70/170 (41%), Gaps = 29/170 (17%)
Query: 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIE 288
FV +L + G+ G+ + +I M E+ DI+ Y+ + G+ G L+ + +L
Sbjct: 440 FVLNSMLNLYGRLGQFTKMEKILAEM-ENGPCTADISTYNILINIYGKAGFLERIEELFV 498
Query: 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348
+++K PD+V + + + A + VF+++ SG P
Sbjct: 499 ELKEKN---------------FRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPD 543
Query: 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398
T KVL+ A E ++ + + +R M +GV ++ V
Sbjct: 544 GGT------------AKVLLSACSSEEQVEQVTSVLRTM-HKGVTVSSLV 580
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/404 (20%), Positives = 148/404 (36%), Gaps = 52/404 (12%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
Y ++ + + GR EA + L++E PD+ +Y +V + G L ++ KLIE M
Sbjct: 249 YNIVIHFVCQLGRIKEAHHLL-LLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVM 307
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
++K L+P+ +Y +++ + F ++ + G+ P
Sbjct: 308 KRKG---------------LKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTV 352
Query: 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 410
Y L+ F + G I A M R + Y + C G
Sbjct: 353 VY------------TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400
Query: 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTV 469
+A + ++ + +P +TFT LI GH+ D + HM + C PN+ T
Sbjct: 401 DMVEAGKLFHEM-FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTY 459
Query: 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTF--------------------LSG--DG 507
++ + A EL E + F L G +
Sbjct: 460 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA 519
Query: 508 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL 567
A L D TY+++++A + + + + + K M G Q L+ G
Sbjct: 520 AGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLED 579
Query: 568 LEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611
E + +L G P+ F ++ Q +++N + A A+ M
Sbjct: 580 GEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMC 623
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 43/289 (14%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLE-DCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
+T+L+ KAG +A R+ N M++ C+ P++ Y ++ L + G L +L+
Sbjct: 424 FTELINGYCKAGHMKDAFRVHNHMIQAGCS--PNVVTYTTLIDGLCKEGDLDSANELLHE 481
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M W L+P++ YN+++N S + + + +GL
Sbjct: 482 M---------------WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADT 526
Query: 350 ATYGLAMESYRR-----------------------CLLKVLVRAFWEEGKINEAVAAVRN 386
TY M++Y + VL+ F G + + +
Sbjct: 527 VTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNW 586
Query: 387 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446
M +G+ A+ + L C + A + + + S R P T+ L+
Sbjct: 587 MLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCS-RGVGPDGKTYENLVKGHCKAR 645
Query: 447 HIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494
++ + +FQ MK ++ T + ++K + + F +A+E+F++ R
Sbjct: 646 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRR 694
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 92/475 (19%), Positives = 166/475 (34%), Gaps = 112/475 (23%)
Query: 230 VYTKLLAILGKAGRPHEALRIFNLML--------EDCNLYP------------------- 262
V+ +L G EA R+F ML + CN+Y
Sbjct: 177 VFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFRE 236
Query: 263 --------DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL 314
++A+Y+ V + Q+G +KE L+ M K PD+
Sbjct: 237 FPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKG---------------YTPDV 281
Query: 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE 374
+ Y+ V+N + V+ + + +++ GLKP++ YG ++ +L R
Sbjct: 282 ISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYG--------SIIGLLCRI---- 329
Query: 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434
K+ EA A M ++G++ VY L C G + A ++ S R P +T
Sbjct: 330 CKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHS-RDITPDVLT 388
Query: 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494
+T +I S F + D E A +LF E
Sbjct: 389 YTAII-------------SGFCQIGDMVE---------------------AGKLFHEM-- 412
Query: 495 ANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554
F G L+PD T++ ++ A + V+ M +GC + +
Sbjct: 413 -------FCKG----LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAP 614
L+ + G + + G P+ + ++ N E+AV L+ A
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 615 FHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRA--LHAL 667
+ +T L ++ DK +++L + + +T + L LH +
Sbjct: 522 LNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGM 576
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/373 (21%), Positives = 151/373 (40%), Gaps = 41/373 (10%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L++ G+ G +++++ + +K S + LL+IL K GR A +F+ M
Sbjct: 144 LIRSYGNAGLFQESVKLFQ---TMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR 200
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
+ PD ++++ + ++ E ++ + M ++ N PD+V
Sbjct: 201 RTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDME---------LYHCN------PDVV 245
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRK--SGLKPSAATYGLAMESYRRCLLKVLVRAFWE 373
YN +++ + + K V + K + + P+ +Y LVR +
Sbjct: 246 TYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSY------------TTLVRGYCM 293
Query: 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM-LVVEKIKSLRHSKPLE 432
+ +I+EAV +M RG+ A Y L L R+ + +++ + P
Sbjct: 294 KQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDA 353
Query: 433 ITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491
TF LI + D GH+D + +FQ M + P+ + + +++ + F +A+ LF E
Sbjct: 354 CTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLCMRNEFDRAETLFNE 413
Query: 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551
L D KP Y+ M E + + E V++ + G Q D
Sbjct: 414 LFEKE----VLLGKDEC--KPLAAAYNPMFEYLCANGKTKQAEKVFRQLMKRGVQ-DPPS 466
Query: 552 HAWLLVEASRAGK 564
+ L+ R GK
Sbjct: 467 YKTLITGHCREGK 479
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 15/179 (8%)
Query: 435 FTGLIISSMDGGHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493
F LI S + G + + +FQ MK P++ T N++L + + A +LF+E
Sbjct: 141 FNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMR 200
Query: 494 RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553
R + G T PD YT+++++ + ++K M L C D +
Sbjct: 201 R--TYGVT----------PDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYN 248
Query: 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHP--LFFTEMLIQAIVQSNYEKAVALINAM 610
++ RAGK + + +L+ HP + +T ++ ++ ++AV + + M
Sbjct: 249 TIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDM 307
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 111/518 (21%), Positives = 196/518 (37%), Gaps = 124/518 (23%)
Query: 186 LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL------LAILG 239
L F + QMLK+ G++ +++ +L+ + D+ + TKL L +
Sbjct: 85 LGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDV---ILCTKLIKGFFTLRNIP 141
Query: 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299
KA R E L F PD+ AY+++ ++ + + ++++RMR K
Sbjct: 142 KAVRVMEILEKFG--------QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKD----- 188
Query: 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES- 358
PD V YN ++ + + V QL +P+ TY + +E+
Sbjct: 189 ----------FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEAT 238
Query: 359 ----------------YRRCL------LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396
R L ++R +EG ++ A VRN+E +G
Sbjct: 239 MLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDV 298
Query: 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456
Y L L N G+W++ ++ K+ S P +T++ LI + G I++ +++ +
Sbjct: 299 ISYNILLRALLNQGKWEEGEKLMTKMFS-EKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357
Query: 457 HMK------------------------------------DHCEPNIGTVNAMLKVYSRND 480
MK D C P+I N +L +N
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 417
Query: 481 MFSKAKELF----EETTRANSSGYTFL------SGD------------GAPLKPDEYTYS 518
+A E+F E NSS Y + SGD + PDE TY+
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477
Query: 519 SMLEASATAHQW-EYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA---FDS 574
SM+ E FE + + + C+ + + +V K H +E A +S
Sbjct: 478 SMISCLCREGMVDEAFELL---VDMRSCEFHPSVVTYNIVLLGFC-KAHRIEDAINVLES 533
Query: 575 LLEAGEIPHPLFFTEMLIQAIVQSNYE-KAVALINAMA 611
++ G P+ +T +LI+ I + Y +A+ L N +
Sbjct: 534 MVGNGCRPNETTYT-VLIEGIGFAGYRAEAMELANDLV 570
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/399 (18%), Positives = 160/399 (40%), Gaps = 46/399 (11%)
Query: 213 LDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272
+D + R L S ++K+L+ + K+ + +F+ M E C + D+ +Y+ V
Sbjct: 54 IDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHM-EVCGIGHDLYSYNIVIN 112
Query: 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG 332
L + + ++ +M + EPD+V ++++N ++
Sbjct: 113 CLCRCSRFVIALSVVGKMMKFG---------------YEPDVVTVSSLINGFCQGNRVFD 157
Query: 333 VFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392
+ ++ + G +P Y ++ + G +N+AV ME+ GV
Sbjct: 158 AIDLVSKMEEMGFRPDVVIY------------NTIIDGSCKIGLVNDAVELFDRMERDGV 205
Query: 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 452
A Y L LC +GRW DA ++ + +R P ITFT +I + G + +
Sbjct: 206 RADAVTYNSLVAGLCCSGRWSDAARLMRDM-VMRDIVPNVITFTAVIDVFVKEGKFSEAM 264
Query: 453 SIFQHMKDHC-EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK 511
+++ M C +P++ T N+++ + +AK++ +
Sbjct: 265 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGC-------------L 311
Query: 512 PDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 571
PD TY++++ + + + +++ MA G D + ++ +AG+ +
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 572 FDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610
F + P+ ++ +L + EKA+ L M
Sbjct: 372 FSRM---DSRPNIRTYSILLYGLCMNWRVEKALVLFENM 407
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/316 (21%), Positives = 127/316 (40%), Gaps = 48/316 (15%)
Query: 231 YTKLLAILGKAGRPHEALRIF-NLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER 289
Y L+A L +GR +A R+ ++++ D + P++ + +V + G E +KL E
Sbjct: 212 YNSLVAGLCCSGRWSDAARLMRDMVMRD--IVPNVITFTAVIDVFVKEGKFSEAMKLYEE 269
Query: 290 MRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349
M ++ ++PD+ YN+++N + + + G P
Sbjct: 270 MTRR---------------CVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDV 314
Query: 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409
TY L+ F + +++E R M QRG+VG Y +
Sbjct: 315 VTY------------NTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQA 362
Query: 410 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGT 468
GR A + ++ S + + I GL ++ ++ + +F++M K E +I T
Sbjct: 363 GRPDAAQEIFSRMDSRPNIRTYSILLYGLCMN----WRVEKALVLFENMQKSEIELDITT 418
Query: 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH 528
N ++ + A +LF LS G LKPD +Y++M+
Sbjct: 419 YNIVIHGMCKIGNVEDAWDLFRS-----------LSCKG--LKPDVVSYTTMISGFCRKR 465
Query: 529 QWEYFEYVYKGMALSG 544
QW+ + +Y+ M G
Sbjct: 466 QWDKSDLLYRKMQEDG 481
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/399 (20%), Positives = 169/399 (42%), Gaps = 65/399 (16%)
Query: 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCN 259
L + W++++++LDWV+ ++ + S F Y +L + +A + A +F+ M +
Sbjct: 129 LSRENDWQRSLALLDWVH--EEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRA- 185
Query: 260 LYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP---------------------SKRI 298
L PD Y ++ + G+ G+ + +++M Q SK I
Sbjct: 186 LAPDRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAI 245
Query: 299 KNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES 358
R + PDLV YN+++N + ++ + K++ ++G+ P+ +Y
Sbjct: 246 SIFSRLKRSGI-TPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYS----- 299
Query: 359 YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 418
L+ + E K EA++ M++ + +L C + +V
Sbjct: 300 -------TLLSVYVENHKFLEALSVFAEMKE------VNCALDLTTCNIMIDVYGQLDMV 346
Query: 419 VEKIK---SLRHS--KPLEITFTGLIISSMDGGHIDDCISIFQHM-KDHCEPNIGTVNAM 472
E + SLR +P +++ ++ + + I +F+ M + E N+ T N M
Sbjct: 347 KEADRLFWSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTM 406
Query: 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEY 532
+K+Y + KA L +E S G ++P+ TYS+++ A + +
Sbjct: 407 IKIYGKTMEHEKATNLVQEM---QSRG----------IEPNAITYSTIISIWGKAGKLDR 453
Query: 533 FEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 571
+++ + SG ++DQ + ++V R G L+ HA
Sbjct: 454 AATLFQKLRSSGVEIDQVLYQTMIVAYERVG---LMGHA 489
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/400 (19%), Positives = 161/400 (40%), Gaps = 50/400 (12%)
Query: 177 FVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236
++ MN++G++ LL + + +A+SV + + DL + + ++
Sbjct: 282 LIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNI---MID 338
Query: 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK 296
+ G+ EA R+F L ++ P++ +Y+++ G+ L E + L M++K
Sbjct: 339 VYGQLDMVKEADRLF-WSLRKMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKD-- 395
Query: 297 RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356
+E ++V YN ++ + + + + ++++ G++P+A TY
Sbjct: 396 -------------IEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYS--- 439
Query: 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM 416
++ + + GK++ A + + GV +Y + G A
Sbjct: 440 ---------TIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAK 490
Query: 417 LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE-PNIGTVNAMLKV 475
++ ++K L + P E T L G ++ +F+ + E +I M+ +
Sbjct: 491 RLLHELK-LPDNIPRETAITIL----AKAGRTEEATWVFRQAFESGEVKDISVFGCMINL 545
Query: 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEY 535
YSRN + E+FE + ++GY PD + +L A ++E +
Sbjct: 546 YSRNQRYVNVIEVFE---KMRTAGYF----------PDSNVIAMVLNAYGKQREFEKADT 592
Query: 536 VYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSL 575
VY+ M GC H +L S ++E F L
Sbjct: 593 VYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRL 632
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 132/295 (44%), Gaps = 45/295 (15%)
Query: 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290
YT LL G++ +P +A +F LM+ P++ Y+++ G G L E V++ +M
Sbjct: 393 YTCLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451
Query: 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350
Q ++P++V +L AC S + V V + G+ + A
Sbjct: 452 EQDG---------------IKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTA 496
Query: 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 410
Y A+ SY ++ +A+A ++M ++ V + + L C
Sbjct: 497 AYNSAIGSY------------INAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMS 544
Query: 411 RWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMK-DHCEPNIGT 468
++ +A+ +++++ L S PL + ++ ++ + G + + SIF MK CEP++
Sbjct: 545 KYPEAISYLKEMEDL--SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIA 602
Query: 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523
+ML Y+ ++ + KA ELF E + +G ++PD S+++ A
Sbjct: 603 YTSMLHAYNASEKWGKACELFLE-----------MEANG--IEPDSIACSALMRA 644
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 110/502 (21%), Positives = 188/502 (37%), Gaps = 102/502 (20%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH-EALRIFNLM 254
L+ G G+WR+A+ V + DL V ++ K+GR + +AL F LM
Sbjct: 219 LINACGSSGNWREALEVCKKMTDNGVGPDL----VTHNIVLSAYKSGRQYSKALSYFELM 274
Query: 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK---------RIKNMHR-- 303
+ + PD ++ + L ++G + + L MR+K ++ I +++
Sbjct: 275 -KGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVK 333
Query: 304 ---KNWDPVLE--------PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352
+N V E P++V YNA++ A V ++++G+ P +Y
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSY 393
Query: 353 GLAMESYRR-----------------------CLLKVLVRAFWEEGKINEAVAAVRNMEQ 389
+ SY R L+ A+ G + EAV R MEQ
Sbjct: 394 TCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ 453
Query: 390 RGV-VGTASVYYELACCL---------------------CNNGRWQDAM------LVVEK 421
G+ SV LA C N + A+ +EK
Sbjct: 454 DGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEK 513
Query: 422 IKSLRHS------KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV-NAMLK 474
+L S K +TFT LI S + IS + M+D P V +++L
Sbjct: 514 AIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLC 573
Query: 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFE 534
YS+ ++A+ +F + A +PD Y+SML A + +W
Sbjct: 574 AYSKQGQVTEAESIFNQMKMAGC-------------EPDVIAYTSMLHAYNASEKWGKAC 620
Query: 535 YVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQ 593
++ M +G + D + L+ ++ G+ + D L+ EIP F E+
Sbjct: 621 ELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD-LMREKEIPFTGAVFFEIFSA 679
Query: 594 AIVQSNYEKAVALINAM-AYAP 614
+++A+ LI M Y P
Sbjct: 680 CNTLQEWKRAIDLIQMMDPYLP 701
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/475 (18%), Positives = 190/475 (40%), Gaps = 57/475 (12%)
Query: 162 VDRLSEREMTAKNWKFV-RIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220
V + +R M W+ V ++N F L++ L +G ++V W +K
Sbjct: 78 VSEVVDRLMALNRWEEVDGVLNSWVGRFARKNFPVLIRELSRRGCIELCVNVFKW---MK 134
Query: 221 DKRDLKSRF-VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279
+++ +R +Y ++ + + +A +F ++ + PD Y ++ G+ G
Sbjct: 135 IQKNYCARNDIYNMMIRLHARHNWVDQARGLF-FEMQKWSCKPDAETYDALINAHGRAGQ 193
Query: 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339
+ + L++ M + + P YN ++NAC S W+ V K+
Sbjct: 194 WRWAMNLMDDMLR---------------AAIAPSRSTYNNLINACGSSGNWREALEVCKK 238
Query: 340 LRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399
+ +G+ P T+ + + +Y+ + ++A++ M+ V + +
Sbjct: 239 MTDNGVGPDLVTHNIVLSAYK------------SGRQYSKALSYFELMKGAKVRPDTTTF 286
Query: 400 YELACCLCNNGRWQDAMLVVEKIKSLR-HSKPLEITFTGLIISSMDGGHIDDCISIFQHM 458
+ CL G+ A+ + ++ R +P +TFT ++ G I++C ++F+ M
Sbjct: 287 NIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAM 346
Query: 459 -KDHCEPNIGTVNAMLKVYSRNDMFSKA-------------KELFEETTRANSSGYTFLS 504
+ +PNI + NA++ Y+ + M A ++ T NS G +
Sbjct: 347 VAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQP 406
Query: 505 GDGAPL---------KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555
G + KP+ TY+++++A + +++ M G + + L
Sbjct: 407 GKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTL 466
Query: 556 LVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610
L SR+ K ++ + G + + + I + EKA+AL +M
Sbjct: 467 LAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSM 521
Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 65/280 (23%)
Query: 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370
EPD++ Y ++L+A S +W +F ++ +G++P + L+RA
Sbjct: 597 EPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIA------------CSALMRA 644
Query: 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430
F + G+ + + M ++ + T +V++E+ W+ A
Sbjct: 645 FNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRA--------------- 689
Query: 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP-NIGTVNAMLKVYSRNDMFSKAKELF 489
I + Q M + +IG N ML ++ ++ +LF
Sbjct: 690 ---------------------IDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLF 728
Query: 490 EETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549
+ SG G LK TY+ +LE W + V + M+ +G Q
Sbjct: 729 YK---------IIASGVGINLK----TYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSN 775
Query: 550 TKHAWLLVEASRAGKCH---LLEHAFDSLLEAGEIPHPLF 586
+ ++ R+ L+ +SL GE P F
Sbjct: 776 QMYRDIISFGERSAGIEFEPLIRQKLESLRNKGEGLIPTF 815
>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330
OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1
Length = 471
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/337 (20%), Positives = 134/337 (39%), Gaps = 51/337 (15%)
Query: 221 DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280
D R + + ++ ++ G+ P AL +F+ M P +V + L
Sbjct: 76 DTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEM-------PQYRCQRTVKSLNSLLSAL 128
Query: 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340
+ +L E+M+++ S + D +PD YN +++ C S + +F ++
Sbjct: 129 LKCGEL-EKMKERLS---------SIDEFGKPDACTYNILIHGCSQSGCFDDALKLFDEM 178
Query: 341 RKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM-EQRGVVGTASVY 399
K +KP+ T+G L+ ++ ++ EA+ +M + GV T +Y
Sbjct: 179 VKKKVKPTGVTFG------------TLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIY 226
Query: 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI---TFTGLIISSMDGGHIDDCISIFQ 456
L LC G A K+K + +++ ++ LI S + G ++ I +
Sbjct: 227 ASLIKALCQIGELSFAF----KLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILE 282
Query: 457 HMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 515
M + C+P+ T N ++ + + A + +E LKPD
Sbjct: 283 EMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKG-------------LKPDVI 329
Query: 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 552
+Y+ +L +WE Y+++ M GC D +
Sbjct: 330 SYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSY 366
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 45/259 (17%)
Query: 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255
L+K L G A + D Y K K D +Y+ L++ L KAGR +E I M
Sbjct: 229 LIKALCQIGELSFAFKLKDEAYEGKIKVDAA---IYSTLISSLIKAGRSNEVSMILEEMS 285
Query: 256 EDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315
E PD Y+ + +E + ++ + M K L+PD++
Sbjct: 286 EK-GCKPDTVTYNVLINGF-----------CVENDSESANRVLDEMVEKG----LKPDVI 329
Query: 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY---------GLAMESY------- 359
YN +L +W+ ++F+ + + G P +Y GL E
Sbjct: 330 SYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEM 389
Query: 360 -------RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 412
RR L+ ++ E GK+ E ++ V + RG+ G A V+ + +C
Sbjct: 390 LFKGYKPRRDRLEGFLQKLCESGKL-EILSKVISSLHRGIAGDADVWSVMIPTMCKEPVI 448
Query: 413 QDAMLVVEKIKSLRHSKPL 431
D++ ++ + +++ PL
Sbjct: 449 SDSIDLL--LNTVKEDGPL 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,693,528
Number of Sequences: 539616
Number of extensions: 12556823
Number of successful extensions: 41259
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 258
Number of HSP's that attempted gapping in prelim test: 37947
Number of HSP's gapped (non-prelim): 1700
length of query: 857
length of database: 191,569,459
effective HSP length: 126
effective length of query: 731
effective length of database: 123,577,843
effective search space: 90335403233
effective search space used: 90335403233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)