Query 003016
Match_columns 857
No_of_seqs 837 out of 3797
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 15:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-80 2.2E-85 766.0 49.5 608 86-774 173-841 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3.3E-77 7.2E-82 718.3 43.7 553 152-775 84-680 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.2E-70 4.8E-75 674.3 52.3 696 87-855 73-853 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-63 3.1E-68 603.5 65.9 431 149-628 364-798 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.6E-61 3.6E-66 585.7 63.7 456 153-655 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-62 2.5E-67 592.1 48.0 585 186-855 83-691 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 3E-21 6.5E-26 240.5 62.4 456 162-680 438-894 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 4.3E-21 9.3E-26 239.1 59.3 435 153-646 463-898 (899)
9 PRK11788 tetratricopeptide rep 99.8 6.1E-18 1.3E-22 190.5 35.1 314 199-565 44-363 (389)
10 PRK11788 tetratricopeptide rep 99.8 2.8E-17 6E-22 185.2 36.7 303 272-620 43-354 (389)
11 KOG4422 Uncharacterized conser 99.8 1.4E-14 3.1E-19 150.8 44.3 450 154-671 115-609 (625)
12 PRK11447 cellulose synthase su 99.7 6.3E-13 1.4E-17 168.9 59.4 445 166-657 246-750 (1157)
13 PRK11447 cellulose synthase su 99.7 2.5E-12 5.5E-17 163.4 63.7 444 159-649 116-701 (1157)
14 PRK15174 Vi polysaccharide exp 99.7 1.9E-13 4.1E-18 162.8 46.7 332 158-543 45-381 (656)
15 PRK15174 Vi polysaccharide exp 99.7 4.4E-13 9.6E-18 159.6 46.7 364 193-611 45-418 (656)
16 KOG4626 O-linked N-acetylgluco 99.7 4.7E-14 1E-18 152.8 34.2 384 189-634 115-508 (966)
17 TIGR00990 3a0801s09 mitochondr 99.7 1.3E-12 2.8E-17 155.8 50.4 414 160-611 132-569 (615)
18 KOG4626 O-linked N-acetylgluco 99.7 2.3E-13 5.1E-18 147.4 38.2 449 159-672 52-508 (966)
19 TIGR00990 3a0801s09 mitochondr 99.7 6E-12 1.3E-16 150.1 51.5 409 192-649 129-572 (615)
20 PRK10049 pgaA outer membrane p 99.7 4E-12 8.7E-17 154.6 49.3 415 188-660 13-466 (765)
21 PRK10049 pgaA outer membrane p 99.7 1E-11 2.2E-16 151.1 50.8 420 159-620 19-461 (765)
22 PRK09782 bacteriophage N4 rece 99.6 1.1E-10 2.3E-15 142.7 54.8 456 155-649 78-707 (987)
23 PRK14574 hmsH outer membrane p 99.6 7.9E-10 1.7E-14 132.5 54.7 446 164-661 43-524 (822)
24 KOG4318 Bicoid mRNA stability 99.6 3.3E-12 7.2E-17 144.1 30.5 439 175-651 10-597 (1088)
25 KOG4422 Uncharacterized conser 99.5 6.2E-11 1.3E-15 124.0 36.7 245 156-427 208-463 (625)
26 PRK09782 bacteriophage N4 rece 99.5 8.1E-10 1.7E-14 135.1 52.3 208 166-422 55-273 (987)
27 KOG2002 TPR-containing nuclear 99.5 1E-09 2.3E-14 126.0 43.9 454 152-658 267-753 (1018)
28 PRK14574 hmsH outer membrane p 99.4 1.7E-08 3.6E-13 121.3 52.7 419 160-612 73-512 (822)
29 KOG2003 TPR repeat-containing 99.4 1.2E-09 2.7E-14 114.7 34.3 400 190-633 201-708 (840)
30 KOG2002 TPR-containing nuclear 99.4 1.5E-08 3.2E-13 116.7 41.9 437 158-651 310-801 (1018)
31 KOG0495 HAT repeat protein [RN 99.3 3.5E-07 7.6E-12 101.1 48.2 424 167-650 452-882 (913)
32 PRK10747 putative protoheme IX 99.3 1.8E-08 3.9E-13 113.3 36.4 285 277-610 97-387 (398)
33 KOG2003 TPR repeat-containing 99.3 3.8E-09 8.2E-14 111.2 26.7 416 161-599 207-709 (840)
34 PRK10747 putative protoheme IX 99.2 3E-08 6.6E-13 111.5 35.5 290 203-542 97-389 (398)
35 KOG2076 RNA polymerase III tra 99.2 1.5E-06 3.2E-11 100.0 48.4 431 167-648 151-695 (895)
36 KOG4318 Bicoid mRNA stability 99.2 1.3E-09 2.8E-14 123.6 23.1 272 250-599 12-286 (1088)
37 PF13429 TPR_15: Tetratricopep 99.2 1.2E-10 2.6E-15 124.8 14.1 160 399-573 113-272 (280)
38 KOG2076 RNA polymerase III tra 99.2 3.2E-07 7E-12 105.4 41.6 373 193-611 142-553 (895)
39 TIGR00540 hemY_coli hemY prote 99.2 5.9E-08 1.3E-12 109.7 36.2 288 275-610 95-396 (409)
40 PF13429 TPR_15: Tetratricopep 99.2 8.9E-11 1.9E-15 125.8 12.4 259 319-610 13-274 (280)
41 KOG1915 Cell cycle control pro 99.2 6.2E-06 1.3E-10 88.3 47.3 429 168-651 86-539 (677)
42 TIGR00540 hemY_coli hemY prote 99.2 7.1E-08 1.5E-12 109.1 35.3 291 202-541 96-397 (409)
43 KOG0495 HAT repeat protein [RN 99.1 5.9E-06 1.3E-10 91.6 45.4 362 237-647 415-781 (913)
44 COG2956 Predicted N-acetylgluc 99.1 1.3E-07 2.8E-12 96.6 29.7 322 139-496 13-348 (389)
45 KOG1155 Anaphase-promoting com 99.1 3.9E-06 8.6E-11 89.8 41.4 361 185-610 159-533 (559)
46 KOG1126 DNA-binding cell divis 99.1 2.9E-08 6.4E-13 110.5 25.9 285 171-496 335-621 (638)
47 PF13041 PPR_2: PPR repeat fam 99.1 1.8E-10 4E-15 87.9 6.1 50 464-526 1-50 (50)
48 PF13041 PPR_2: PPR repeat fam 99.1 3.2E-10 6.9E-15 86.5 6.6 50 262-326 1-50 (50)
49 KOG2047 mRNA splicing factor [ 99.1 5.5E-05 1.2E-09 84.2 48.7 509 81-647 59-686 (835)
50 KOG1915 Cell cycle control pro 99.0 6.3E-05 1.4E-09 80.8 53.4 405 167-626 119-547 (677)
51 COG2956 Predicted N-acetylgluc 99.0 1.1E-06 2.5E-11 89.9 30.4 289 204-542 49-346 (389)
52 COG3071 HemY Uncharacterized e 99.0 2.3E-06 5E-11 90.4 33.6 285 277-611 97-388 (400)
53 COG3071 HemY Uncharacterized e 99.0 1.6E-05 3.4E-10 84.2 39.1 299 203-548 97-395 (400)
54 KOG1155 Anaphase-promoting com 99.0 2.8E-05 6.1E-10 83.5 40.7 355 226-642 162-530 (559)
55 TIGR02521 type_IV_pilW type IV 99.0 3.8E-07 8.3E-12 93.7 26.4 200 228-459 31-230 (234)
56 KOG1126 DNA-binding cell divis 98.9 2.2E-07 4.7E-12 103.7 25.2 281 279-614 334-621 (638)
57 TIGR02521 type_IV_pilW type IV 98.9 7E-07 1.5E-11 91.7 27.4 199 396-611 31-230 (234)
58 PRK12370 invasion protein regu 98.8 1.3E-06 2.9E-11 102.6 28.7 266 188-496 254-536 (553)
59 KOG0547 Translocase of outer m 98.8 3.2E-05 6.8E-10 83.6 34.7 407 163-610 123-563 (606)
60 PRK12370 invasion protein regu 98.8 2.3E-06 5E-11 100.6 28.5 233 226-495 254-502 (553)
61 PF12569 NARP1: NMDA receptor- 98.7 2.1E-05 4.5E-10 89.9 33.1 54 237-293 13-67 (517)
62 PF12569 NARP1: NMDA receptor- 98.7 3.4E-05 7.4E-10 88.2 33.2 289 271-611 11-332 (517)
63 KOG1156 N-terminal acetyltrans 98.7 0.0013 2.7E-08 74.0 42.5 435 168-644 20-495 (700)
64 KOG1840 Kinesin light chain [C 98.7 1.2E-05 2.5E-10 90.9 27.5 252 191-459 200-477 (508)
65 KOG1840 Kinesin light chain [C 98.7 7.2E-06 1.6E-10 92.6 25.6 246 229-493 200-477 (508)
66 KOG2047 mRNA splicing factor [ 98.6 0.0013 2.7E-08 73.7 41.6 274 191-496 103-417 (835)
67 KOG3785 Uncharacterized conser 98.6 0.00011 2.3E-09 76.3 30.6 418 163-623 30-498 (557)
68 KOG1173 Anaphase-promoting com 98.6 5E-05 1.1E-09 83.6 29.1 290 260-593 240-531 (611)
69 KOG1156 N-terminal acetyltrans 98.6 0.0033 7.1E-08 70.8 42.6 263 194-495 12-283 (700)
70 KOG1173 Anaphase-promoting com 98.6 7.3E-05 1.6E-09 82.3 28.9 286 188-524 242-532 (611)
71 KOG0547 Translocase of outer m 98.5 0.00025 5.4E-09 76.8 32.0 391 198-646 123-564 (606)
72 KOG1129 TPR repeat-containing 98.5 9E-06 2E-10 83.3 19.6 231 231-496 226-459 (478)
73 KOG1129 TPR repeat-containing 98.5 8.6E-06 1.9E-10 83.4 18.8 226 365-610 227-455 (478)
74 KOG3785 Uncharacterized conser 98.5 0.00062 1.3E-08 70.8 31.3 378 197-640 29-449 (557)
75 PRK11189 lipoprotein NlpI; Pro 98.5 0.00015 3.3E-09 78.2 28.9 95 230-342 66-160 (296)
76 cd05804 StaR_like StaR_like; a 98.4 0.0014 3E-08 72.7 36.2 203 227-460 5-214 (355)
77 PRK11189 lipoprotein NlpI; Pro 98.4 0.00027 5.9E-09 76.2 28.5 215 169-424 40-264 (296)
78 PF12854 PPR_1: PPR repeat 98.4 4.9E-07 1.1E-11 62.3 4.0 32 259-290 2-33 (34)
79 KOG1174 Anaphase-promoting com 98.3 0.0013 2.8E-08 70.0 30.2 291 235-578 201-500 (564)
80 cd05804 StaR_like StaR_like; a 98.3 0.0024 5.2E-08 70.8 35.0 308 193-542 9-335 (355)
81 KOG0985 Vesicle coat protein c 98.3 0.01 2.3E-07 69.5 38.9 427 160-678 843-1336(1666)
82 PF12854 PPR_1: PPR repeat 98.3 9.6E-07 2.1E-11 60.8 4.4 34 343-388 1-34 (34)
83 KOG2376 Signal recognition par 98.3 0.014 3.1E-07 65.2 40.6 421 156-646 13-518 (652)
84 KOG4162 Predicted calmodulin-b 98.2 0.02 4.4E-07 65.9 39.2 383 226-650 321-785 (799)
85 COG3063 PilF Tfp pilus assembl 98.2 0.0006 1.3E-08 67.5 23.0 197 435-648 38-236 (250)
86 KOG3616 Selective LIM binding 98.2 0.0022 4.8E-08 72.2 29.9 77 404-491 740-816 (1636)
87 KOG1070 rRNA processing protei 98.2 0.00068 1.5E-08 81.7 27.5 217 243-496 1440-1664(1710)
88 KOG1914 mRNA cleavage and poly 98.2 0.011 2.3E-07 65.4 34.2 422 151-610 16-498 (656)
89 KOG3617 WD40 and TPR repeat-co 98.2 0.011 2.5E-07 67.8 35.0 388 188-679 724-1167(1416)
90 PF04733 Coatomer_E: Coatomer 98.2 6E-05 1.3E-09 80.3 16.7 150 369-542 110-264 (290)
91 PRK04841 transcriptional regul 98.1 0.019 4.1E-07 72.3 41.8 347 237-613 383-760 (903)
92 PF14432 DYW_deaminase: DYW fa 98.1 5.2E-08 1.1E-12 88.1 -6.3 88 665-776 9-110 (116)
93 COG3063 PilF Tfp pilus assembl 98.1 0.0016 3.5E-08 64.5 24.1 200 266-496 37-237 (250)
94 KOG4162 Predicted calmodulin-b 98.1 0.022 4.8E-07 65.6 35.8 402 165-611 294-781 (799)
95 PRK04841 transcriptional regul 98.1 0.016 3.4E-07 73.1 39.3 373 159-578 345-760 (903)
96 KOG2376 Signal recognition par 98.1 0.036 7.7E-07 62.1 39.1 401 193-649 15-488 (652)
97 KOG1070 rRNA processing protei 98.1 0.0015 3.3E-08 78.9 27.0 242 178-454 1447-1693(1710)
98 KOG3617 WD40 and TPR repeat-co 98.0 0.05 1.1E-06 62.8 36.9 51 599-649 1306-1360(1416)
99 PF04733 Coatomer_E: Coatomer 98.0 0.00018 3.8E-09 76.8 16.7 127 365-496 135-266 (290)
100 KOG0548 Molecular co-chaperone 98.0 0.036 7.9E-07 61.5 34.2 235 365-631 228-471 (539)
101 KOG0985 Vesicle coat protein c 98.0 0.047 1E-06 64.4 35.3 259 149-482 978-1265(1666)
102 KOG1914 mRNA cleavage and poly 97.9 0.065 1.4E-06 59.5 37.4 376 226-648 18-501 (656)
103 KOG3616 Selective LIM binding 97.9 0.0048 1E-07 69.7 25.6 329 167-572 556-931 (1636)
104 KOG1127 TPR repeat-containing 97.9 0.055 1.2E-06 64.0 33.8 398 171-610 474-949 (1238)
105 KOG1125 TPR repeat-containing 97.9 0.0024 5.2E-08 71.1 21.9 259 274-608 295-566 (579)
106 KOG1128 Uncharacterized conser 97.8 0.0006 1.3E-08 77.5 17.2 213 365-613 402-616 (777)
107 KOG4340 Uncharacterized conser 97.8 0.0074 1.6E-07 61.7 23.0 358 185-610 5-372 (459)
108 TIGR03302 OM_YfiO outer membra 97.8 0.0022 4.9E-08 66.5 20.1 96 433-543 34-144 (235)
109 KOG1127 TPR repeat-containing 97.8 0.14 3.1E-06 60.7 35.1 325 153-491 524-909 (1238)
110 TIGR03302 OM_YfiO outer membra 97.7 0.0032 6.9E-08 65.4 20.2 186 395-613 32-232 (235)
111 KOG1128 Uncharacterized conser 97.7 0.0021 4.6E-08 73.2 19.2 243 306-595 390-634 (777)
112 KOG1174 Anaphase-promoting com 97.7 0.12 2.6E-06 55.6 40.0 305 311-651 191-503 (564)
113 KOG4340 Uncharacterized conser 97.7 0.027 5.9E-07 57.7 24.6 308 266-610 12-336 (459)
114 TIGR00756 PPR pentatricopeptid 97.7 5.1E-05 1.1E-09 52.5 3.9 35 315-349 1-35 (35)
115 COG5010 TadD Flp pilus assembl 97.7 0.0038 8.1E-08 63.2 18.5 167 187-388 63-229 (257)
116 TIGR00756 PPR pentatricopeptid 97.6 8.7E-05 1.9E-09 51.2 4.3 30 467-496 1-30 (35)
117 PF13812 PPR_3: Pentatricopept 97.6 8.8E-05 1.9E-09 51.0 3.9 33 315-347 2-34 (34)
118 PLN02789 farnesyltranstransfer 97.6 0.054 1.2E-06 58.7 27.2 214 316-561 39-267 (320)
119 PLN02789 farnesyltranstransfer 97.6 0.056 1.2E-06 58.6 27.0 127 196-344 43-172 (320)
120 KOG1125 TPR repeat-containing 97.5 0.0074 1.6E-07 67.3 19.7 249 371-641 295-564 (579)
121 COG4783 Putative Zn-dependent 97.5 0.086 1.9E-06 58.1 26.7 209 375-622 251-462 (484)
122 PRK15179 Vi polysaccharide bio 97.4 0.039 8.5E-07 65.9 26.1 193 197-439 35-229 (694)
123 PRK14720 transcript cleavage f 97.4 0.034 7.4E-07 67.2 25.5 220 191-496 32-253 (906)
124 PF13812 PPR_3: Pentatricopept 97.4 0.0002 4.3E-09 49.2 4.1 30 467-496 2-31 (34)
125 PRK14720 transcript cleavage f 97.4 0.048 1E-06 65.9 26.2 151 151-343 27-178 (906)
126 PRK15179 Vi polysaccharide bio 97.4 0.045 9.9E-07 65.4 25.5 159 225-423 83-243 (694)
127 COG4783 Putative Zn-dependent 97.4 0.17 3.6E-06 55.9 27.1 150 271-469 313-462 (484)
128 KOG3081 Vesicle coat complex C 97.4 0.1 2.2E-06 53.1 23.5 121 436-578 112-236 (299)
129 COG5010 TadD Flp pilus assembl 97.3 0.041 8.8E-07 56.0 20.5 163 227-422 66-228 (257)
130 PF01535 PPR: PPR repeat; Int 97.3 0.00032 6.8E-09 47.0 3.5 28 364-391 3-30 (31)
131 KOG3081 Vesicle coat complex C 97.3 0.11 2.4E-06 53.0 22.6 118 369-496 116-237 (299)
132 PF01535 PPR: PPR repeat; Int 97.3 0.00027 5.9E-09 47.3 3.1 31 315-345 1-31 (31)
133 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.0079 1.7E-07 66.5 15.9 128 228-389 169-296 (395)
134 PRK10370 formate-dependent nit 97.2 0.012 2.6E-07 59.2 16.1 120 374-496 52-174 (198)
135 KOG3060 Uncharacterized conser 97.2 0.17 3.7E-06 51.2 23.2 186 327-542 25-219 (289)
136 PF10037 MRP-S27: Mitochondria 97.2 0.0042 9.1E-08 69.0 13.3 134 177-327 50-186 (429)
137 PRK15359 type III secretion sy 97.2 0.0084 1.8E-07 57.0 13.8 96 399-496 27-122 (144)
138 PRK10370 formate-dependent nit 97.2 0.016 3.6E-07 58.2 16.6 120 168-294 52-174 (198)
139 KOG0624 dsRNA-activated protei 97.2 0.42 9.1E-06 50.3 28.0 90 160-257 43-135 (504)
140 PF10037 MRP-S27: Mitochondria 97.2 0.0032 7E-08 69.9 12.1 123 310-445 62-186 (429)
141 PRK15359 type III secretion sy 97.2 0.014 3.1E-07 55.4 15.1 96 192-293 26-121 (144)
142 KOG2053 Mitochondrial inherita 97.2 0.92 2E-05 53.7 42.6 104 166-277 54-157 (932)
143 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0096 2.1E-07 65.8 15.3 124 365-494 173-296 (395)
144 KOG0624 dsRNA-activated protei 97.1 0.54 1.2E-05 49.6 33.5 305 234-612 44-369 (504)
145 TIGR02552 LcrH_SycD type III s 97.1 0.021 4.4E-07 53.4 15.0 97 191-293 18-114 (135)
146 TIGR02552 LcrH_SycD type III s 97.0 0.019 4.2E-07 53.6 13.9 98 397-496 18-115 (135)
147 PF08579 RPM2: Mitochondrial r 96.9 0.0096 2.1E-07 52.5 9.7 88 317-408 28-116 (120)
148 PF08579 RPM2: Mitochondrial r 96.8 0.013 2.7E-07 51.7 10.2 81 468-561 27-116 (120)
149 cd00189 TPR Tetratricopeptide 96.8 0.017 3.7E-07 48.7 11.3 94 399-494 3-96 (100)
150 PF05843 Suf: Suppressor of fo 96.7 0.024 5.2E-07 60.5 13.8 132 191-343 2-136 (280)
151 PF09976 TPR_21: Tetratricopep 96.7 0.06 1.3E-06 51.2 15.2 125 467-609 13-143 (145)
152 PF04840 Vps16_C: Vps16, C-ter 96.7 1.2 2.6E-05 48.2 26.7 107 365-491 181-287 (319)
153 PF04840 Vps16_C: Vps16, C-ter 96.7 1.2 2.7E-05 48.1 31.3 127 468-633 179-305 (319)
154 PF09976 TPR_21: Tetratricopep 96.7 0.053 1.2E-06 51.5 14.6 125 230-386 14-143 (145)
155 PF05843 Suf: Suppressor of fo 96.7 0.03 6.4E-07 59.8 14.1 129 398-542 3-135 (280)
156 cd00189 TPR Tetratricopeptide 96.7 0.025 5.3E-07 47.8 11.3 93 232-342 4-96 (100)
157 PF06239 ECSIT: Evolutionarily 96.6 0.035 7.5E-07 55.1 12.7 88 262-376 45-153 (228)
158 KOG3060 Uncharacterized conser 96.6 1 2.3E-05 45.7 23.5 184 410-611 26-218 (289)
159 KOG0548 Molecular co-chaperone 96.6 1.9 4.1E-05 48.4 38.4 379 165-596 12-471 (539)
160 PF06239 ECSIT: Evolutionarily 96.5 0.029 6.2E-07 55.7 11.0 118 310-459 43-166 (228)
161 KOG2280 Vacuolar assembly/sort 96.4 1.6 3.5E-05 50.7 25.7 348 181-608 423-794 (829)
162 TIGR02795 tol_pal_ybgF tol-pal 96.2 0.13 2.7E-06 46.5 13.7 102 192-294 4-106 (119)
163 TIGR02795 tol_pal_ybgF tol-pal 96.2 0.14 3.1E-06 46.1 13.9 107 365-471 6-115 (119)
164 PF14938 SNAP: Soluble NSF att 96.0 1.2 2.5E-05 47.7 21.6 130 323-460 123-265 (282)
165 PRK10153 DNA-binding transcrip 95.9 0.4 8.6E-06 55.6 18.7 143 462-621 333-491 (517)
166 PF12895 Apc3: Anaphase-promot 95.8 0.023 4.9E-07 48.3 6.2 47 375-421 3-50 (84)
167 PLN03088 SGT1, suppressor of 95.8 0.14 2.9E-06 56.8 13.9 91 404-496 10-100 (356)
168 KOG2280 Vacuolar assembly/sort 95.8 4.4 9.4E-05 47.4 25.5 332 159-572 441-793 (829)
169 PRK02603 photosystem I assembl 95.8 0.42 9.2E-06 46.8 15.8 98 397-494 36-148 (172)
170 PLN03088 SGT1, suppressor of 95.7 0.22 4.7E-06 55.2 14.8 90 198-293 10-99 (356)
171 PF12921 ATP13: Mitochondrial 95.6 0.16 3.4E-06 46.8 11.2 88 189-276 1-100 (126)
172 PF12895 Apc3: Anaphase-promot 95.6 0.037 8.1E-07 47.0 6.7 80 479-574 2-83 (84)
173 PF14559 TPR_19: Tetratricopep 95.5 0.038 8.3E-07 44.6 6.2 53 444-496 3-55 (68)
174 PRK10153 DNA-binding transcrip 95.5 0.85 1.8E-05 52.9 19.3 146 184-352 331-489 (517)
175 KOG1538 Uncharacterized conser 95.4 1.4 3E-05 50.1 19.4 25 627-651 825-849 (1081)
176 PRK02603 photosystem I assembl 95.4 0.63 1.4E-05 45.5 15.7 81 364-447 38-121 (172)
177 PRK10866 outer membrane biogen 95.4 4 8.7E-05 42.4 23.1 195 319-540 37-238 (243)
178 KOG1538 Uncharacterized conser 95.3 0.39 8.4E-06 54.4 14.7 159 283-494 619-801 (1081)
179 PF14938 SNAP: Soluble NSF att 95.2 5.2 0.00011 42.6 27.1 25 317-341 38-62 (282)
180 CHL00033 ycf3 photosystem I as 95.0 0.39 8.5E-06 46.8 12.8 96 396-491 35-138 (168)
181 COG4235 Cytochrome c biogenesi 95.0 0.4 8.7E-06 50.1 13.0 115 394-523 154-269 (287)
182 PF12688 TPR_5: Tetratrico pep 95.0 0.94 2E-05 41.3 14.0 88 404-492 9-101 (120)
183 PF14559 TPR_19: Tetratricopep 94.9 0.11 2.4E-06 41.8 7.1 64 201-271 2-65 (68)
184 PF12921 ATP13: Mitochondrial 94.8 0.44 9.6E-06 43.9 11.6 93 465-557 1-96 (126)
185 PF03704 BTAD: Bacterial trans 94.8 0.7 1.5E-05 43.7 13.6 119 200-352 16-139 (146)
186 KOG2796 Uncharacterized conser 94.8 0.94 2E-05 46.1 14.5 136 266-424 179-314 (366)
187 CHL00033 ycf3 photosystem I as 94.8 0.83 1.8E-05 44.5 14.3 93 364-458 38-139 (168)
188 PRK15363 pathogenicity island 94.7 1.1 2.3E-05 42.7 13.9 97 466-578 35-132 (157)
189 KOG3941 Intermediate in Toll s 94.6 0.42 9.1E-06 49.0 11.4 118 311-460 64-187 (406)
190 KOG0553 TPR repeat-containing 94.6 1.4 3E-05 46.1 15.4 94 476-588 91-186 (304)
191 PRK10866 outer membrane biogen 94.5 6.7 0.00015 40.8 21.0 178 233-459 37-239 (243)
192 KOG0553 TPR repeat-containing 94.5 0.44 9.6E-06 49.6 11.7 118 484-632 76-195 (304)
193 PF08631 SPO22: Meiosis protei 94.5 7.8 0.00017 41.2 26.7 224 372-609 4-271 (278)
194 PF13432 TPR_16: Tetratricopep 94.4 0.18 3.9E-06 40.2 7.2 57 440-496 5-61 (65)
195 KOG2796 Uncharacterized conser 94.2 1.9 4E-05 44.1 15.0 129 365-494 181-314 (366)
196 PF12688 TPR_5: Tetratrico pep 94.2 1.8 3.8E-05 39.5 13.7 107 164-276 10-118 (120)
197 PF13525 YfiO: Outer membrane 94.0 7.6 0.00017 39.1 20.6 179 320-534 11-198 (203)
198 KOG2053 Mitochondrial inherita 93.8 19 0.00042 43.2 47.0 221 167-424 21-254 (932)
199 COG5107 RNA14 Pre-mRNA 3'-end 93.8 1.4 3E-05 48.2 14.0 147 362-527 398-548 (660)
200 COG4700 Uncharacterized protei 93.7 6.9 0.00015 38.1 17.0 128 261-419 86-216 (251)
201 PF13432 TPR_16: Tetratricopep 93.6 0.27 5.8E-06 39.2 6.7 55 236-292 5-59 (65)
202 PF03704 BTAD: Bacterial trans 93.6 0.41 8.9E-06 45.4 9.1 70 467-551 63-138 (146)
203 PF07079 DUF1347: Protein of u 93.4 16 0.00034 40.6 35.6 389 200-623 16-529 (549)
204 KOG2041 WD40 repeat protein [G 93.3 20 0.00044 41.7 31.5 244 188-496 690-953 (1189)
205 PF13414 TPR_11: TPR repeat; P 93.0 0.4 8.6E-06 38.7 6.9 65 263-343 2-67 (69)
206 PRK15363 pathogenicity island 92.9 3.6 7.7E-05 39.2 13.9 92 319-424 40-131 (157)
207 KOG2041 WD40 repeat protein [G 92.6 25 0.00054 41.0 27.2 191 203-460 747-951 (1189)
208 PF13414 TPR_11: TPR repeat; P 92.4 0.56 1.2E-05 37.7 7.1 60 435-494 6-66 (69)
209 PRK10803 tol-pal system protei 92.3 1.9 4.2E-05 45.3 12.7 96 466-578 143-246 (263)
210 KOG0550 Molecular chaperone (D 92.2 19 0.00041 39.5 19.6 151 442-612 179-349 (486)
211 PRK10803 tol-pal system protei 92.2 1.8 3.9E-05 45.5 12.2 101 228-344 143-247 (263)
212 PF13281 DUF4071: Domain of un 92.1 18 0.0004 39.8 20.1 92 437-541 146-253 (374)
213 smart00299 CLH Clathrin heavy 92.1 5.6 0.00012 37.2 14.6 126 365-526 11-137 (140)
214 KOG3941 Intermediate in Toll s 92.1 1 2.2E-05 46.3 9.6 46 331-388 140-186 (406)
215 KOG1920 IkappaB kinase complex 92.1 35 0.00075 42.5 23.6 90 510-611 931-1026(1265)
216 PF04053 Coatomer_WDAD: Coatom 91.7 6.6 0.00014 44.6 16.7 157 323-539 270-427 (443)
217 PF13371 TPR_9: Tetratricopept 91.5 0.98 2.1E-05 36.8 7.6 57 440-496 3-59 (73)
218 smart00299 CLH Clathrin heavy 91.2 11 0.00023 35.3 15.4 125 470-630 11-136 (140)
219 PF13525 YfiO: Outer membrane 91.1 18 0.0004 36.3 18.2 57 237-293 14-71 (203)
220 PF04053 Coatomer_WDAD: Coatom 90.9 5.5 0.00012 45.3 15.2 110 157-290 263-373 (443)
221 PF10300 DUF3808: Protein of u 90.8 9.9 0.00021 43.8 17.5 166 192-388 190-374 (468)
222 KOG2114 Vacuolar assembly/sort 90.8 44 0.00095 40.1 29.0 176 231-459 337-517 (933)
223 PF09205 DUF1955: Domain of un 90.7 11 0.00025 34.5 13.7 122 526-651 14-152 (161)
224 PF13424 TPR_12: Tetratricopep 90.5 0.99 2.1E-05 37.4 6.8 63 229-291 6-73 (78)
225 PF13371 TPR_9: Tetratricopept 90.4 1.3 2.7E-05 36.1 7.3 55 369-424 3-57 (73)
226 PF07035 Mic1: Colon cancer-as 90.2 14 0.0003 35.8 14.9 136 486-650 14-151 (167)
227 PF10300 DUF3808: Protein of u 90.2 9.5 0.00021 43.9 16.6 94 399-493 191-294 (468)
228 PF13170 DUF4003: Protein of u 89.5 13 0.00028 39.8 15.9 127 413-555 79-223 (297)
229 PF09205 DUF1955: Domain of un 89.5 16 0.00034 33.7 13.5 137 374-545 15-151 (161)
230 PF13281 DUF4071: Domain of un 89.4 34 0.00073 37.8 19.0 102 173-275 121-228 (374)
231 PLN03098 LPA1 LOW PSII ACCUMUL 89.3 4.2 9E-05 45.4 12.0 66 225-293 72-141 (453)
232 PF13424 TPR_12: Tetratricopep 88.5 1.7 3.8E-05 35.8 6.8 26 398-423 7-32 (78)
233 PLN03098 LPA1 LOW PSII ACCUMUL 88.5 5.2 0.00011 44.6 12.1 65 464-543 73-141 (453)
234 COG4700 Uncharacterized protei 88.3 27 0.00058 34.2 18.6 107 185-294 84-190 (251)
235 PF07035 Mic1: Colon cancer-as 87.9 27 0.00059 33.8 15.9 133 382-543 15-149 (167)
236 COG4235 Cytochrome c biogenesi 87.3 24 0.00053 37.1 15.5 99 227-343 155-256 (287)
237 COG3898 Uncharacterized membra 87.0 52 0.0011 36.0 34.7 215 244-496 69-293 (531)
238 KOG1130 Predicted G-alpha GTPa 86.7 13 0.00029 40.5 13.3 287 272-610 25-341 (639)
239 PF13170 DUF4003: Protein of u 86.2 52 0.0011 35.3 23.8 175 228-428 60-253 (297)
240 KOG1130 Predicted G-alpha GTPa 85.8 28 0.00061 38.1 15.1 132 515-646 196-342 (639)
241 PF07079 DUF1347: Protein of u 85.7 66 0.0014 36.0 36.7 375 238-646 16-522 (549)
242 PF08631 SPO22: Meiosis protei 85.0 57 0.0012 34.6 26.6 229 325-575 4-272 (278)
243 KOG1920 IkappaB kinase complex 84.3 98 0.0021 38.8 20.4 115 463-610 932-1052(1265)
244 KOG0543 FKBP-type peptidyl-pro 84.1 13 0.00028 40.7 12.1 61 434-494 259-319 (397)
245 KOG2610 Uncharacterized conser 83.5 34 0.00074 36.5 14.2 84 409-494 116-203 (491)
246 PF04097 Nic96: Nup93/Nic96; 83.2 46 0.00099 39.8 17.5 62 229-293 113-181 (613)
247 PRK15331 chaperone protein Sic 83.1 24 0.00052 33.9 12.1 87 475-577 46-133 (165)
248 COG5107 RNA14 Pre-mRNA 3'-end 82.6 87 0.0019 35.0 38.6 149 465-631 396-547 (660)
249 COG3629 DnrI DNA-binding trans 82.6 12 0.00027 39.4 10.9 80 190-273 153-236 (280)
250 COG3898 Uncharacterized membra 81.6 88 0.0019 34.3 29.3 267 187-496 115-393 (531)
251 PF10602 RPN7: 26S proteasome 81.5 23 0.0005 34.8 12.0 95 364-460 39-141 (177)
252 KOG4555 TPR repeat-containing 81.2 41 0.00088 31.0 12.0 96 272-392 51-146 (175)
253 PF04097 Nic96: Nup93/Nic96; 80.4 1.1E+02 0.0023 36.8 19.2 72 263-351 111-189 (613)
254 KOG1585 Protein required for f 80.3 74 0.0016 32.7 15.2 207 267-538 34-251 (308)
255 COG1729 Uncharacterized protei 79.5 20 0.00044 37.3 11.0 87 408-496 153-245 (262)
256 COG1729 Uncharacterized protei 78.9 23 0.0005 36.8 11.2 89 204-293 155-244 (262)
257 KOG2610 Uncharacterized conser 78.5 34 0.00073 36.6 12.2 157 372-541 114-274 (491)
258 PRK11906 transcriptional regul 78.4 94 0.002 35.1 16.4 162 156-339 252-432 (458)
259 PF04184 ST7: ST7 protein; In 77.0 1E+02 0.0022 35.0 16.1 50 596-645 271-321 (539)
260 PRK15331 chaperone protein Sic 76.8 21 0.00046 34.3 9.5 90 271-390 44-134 (165)
261 KOG0543 FKBP-type peptidyl-pro 76.8 33 0.00071 37.7 12.1 125 369-495 216-355 (397)
262 KOG4555 TPR repeat-containing 76.5 43 0.00093 30.8 10.7 55 441-495 52-106 (175)
263 cd00923 Cyt_c_Oxidase_Va Cytoc 75.5 16 0.00034 31.7 7.3 58 415-473 26-83 (103)
264 COG3629 DnrI DNA-binding trans 75.3 21 0.00045 37.7 9.9 83 433-523 154-236 (280)
265 KOG4570 Uncharacterized conser 74.6 27 0.00059 36.9 10.2 108 303-424 53-163 (418)
266 PF11207 DUF2989: Protein of u 74.5 21 0.00046 35.5 9.1 75 173-248 124-198 (203)
267 KOG1258 mRNA processing protei 74.4 1.8E+02 0.0038 33.9 34.4 401 152-599 42-490 (577)
268 PF00637 Clathrin: Region in C 74.2 0.063 1.4E-06 50.8 -8.3 82 367-456 13-94 (143)
269 KOG4570 Uncharacterized conser 73.9 34 0.00073 36.3 10.7 99 227-344 63-165 (418)
270 PF10602 RPN7: 26S proteasome 73.3 48 0.001 32.6 11.5 96 467-575 37-139 (177)
271 PF00637 Clathrin: Region in C 73.1 0.099 2.2E-06 49.4 -7.3 128 320-481 13-140 (143)
272 PF13428 TPR_14: Tetratricopep 73.0 10 0.00022 27.4 5.1 29 265-293 2-30 (44)
273 COG1747 Uncharacterized N-term 72.8 1.8E+02 0.0039 33.2 20.3 181 263-477 65-250 (711)
274 KOG1585 Protein required for f 72.4 1.2E+02 0.0027 31.2 18.7 207 399-642 34-250 (308)
275 PF13512 TPR_18: Tetratricopep 71.9 89 0.0019 29.4 12.3 76 200-277 20-95 (142)
276 PRK11906 transcriptional regul 71.1 1.9E+02 0.0041 32.8 16.7 138 481-633 273-422 (458)
277 PF02284 COX5A: Cytochrome c o 71.0 15 0.00033 32.0 6.3 48 426-473 39-86 (108)
278 COG3118 Thioredoxin domain-con 70.7 1.5E+02 0.0032 31.5 15.9 142 323-481 143-287 (304)
279 COG0457 NrfG FOG: TPR repeat [ 70.4 1.1E+02 0.0023 29.6 28.6 203 264-496 59-266 (291)
280 PF09613 HrpB1_HrpK: Bacterial 70.2 1E+02 0.0022 29.6 12.4 61 230-293 9-73 (160)
281 COG4649 Uncharacterized protei 69.9 1.1E+02 0.0024 29.7 14.3 129 238-394 68-200 (221)
282 PF13176 TPR_7: Tetratricopept 69.1 9.6 0.00021 26.2 4.0 26 266-291 1-26 (36)
283 PF13428 TPR_14: Tetratricopep 68.7 16 0.00034 26.4 5.3 27 398-424 3-29 (44)
284 PF13176 TPR_7: Tetratricopept 68.7 11 0.00023 25.9 4.2 26 468-493 1-26 (36)
285 PF13762 MNE1: Mitochondrial s 68.1 95 0.0021 29.3 11.5 93 421-527 27-128 (145)
286 KOG1550 Extracellular protein 67.5 2.3E+02 0.005 33.5 17.6 156 476-651 259-429 (552)
287 PF02284 COX5A: Cytochrome c o 66.8 44 0.00095 29.3 8.2 61 378-440 27-87 (108)
288 KOG2066 Vacuolar assembly/sort 64.9 3.1E+02 0.0068 33.0 28.7 26 365-390 509-534 (846)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 64.7 41 0.0009 29.2 7.6 45 567-611 25-69 (103)
290 COG0457 NrfG FOG: TPR repeat [ 62.6 1.5E+02 0.0032 28.5 30.6 223 277-542 36-264 (291)
291 PF00515 TPR_1: Tetratricopept 62.0 19 0.00041 24.0 4.4 30 467-496 2-31 (34)
292 KOG0276 Vesicle coat complex C 61.0 74 0.0016 36.8 10.9 27 315-341 667-693 (794)
293 PF13512 TPR_18: Tetratricopep 60.5 1.2E+02 0.0027 28.5 10.7 66 228-294 11-77 (142)
294 TIGR02561 HrpB1_HrpK type III 60.4 1.4E+02 0.0031 28.2 11.0 52 275-345 21-75 (153)
295 COG4105 ComL DNA uptake lipopr 60.4 2.2E+02 0.0047 29.6 21.3 55 239-293 45-100 (254)
296 COG3118 Thioredoxin domain-con 60.0 2.4E+02 0.0052 30.0 16.9 119 441-578 143-265 (304)
297 KOG0550 Molecular chaperone (D 58.8 3E+02 0.0064 30.7 22.2 119 370-494 178-315 (486)
298 PF13374 TPR_10: Tetratricopep 58.4 23 0.0005 24.6 4.6 28 397-424 3-30 (42)
299 PF09613 HrpB1_HrpK: Bacterial 57.9 1.8E+02 0.0039 27.9 13.6 50 444-495 22-73 (160)
300 PRK09687 putative lyase; Provi 57.7 2.6E+02 0.0056 29.7 27.9 131 366-525 147-278 (280)
301 PF00515 TPR_1: Tetratricopept 57.3 23 0.00051 23.5 4.2 28 265-292 2-29 (34)
302 PF13374 TPR_10: Tetratricopep 56.6 25 0.00055 24.3 4.6 29 466-494 2-30 (42)
303 TIGR02561 HrpB1_HrpK type III 56.1 1.9E+02 0.004 27.5 11.0 70 325-411 21-91 (153)
304 PF13929 mRNA_stabil: mRNA sta 55.5 2.8E+02 0.0061 29.4 15.7 135 410-557 142-286 (292)
305 PF13431 TPR_17: Tetratricopep 55.1 17 0.00038 24.6 3.2 23 226-248 11-33 (34)
306 KOG2114 Vacuolar assembly/sort 53.5 5E+02 0.011 31.7 23.5 149 157-339 336-488 (933)
307 PF07719 TPR_2: Tetratricopept 51.7 40 0.00088 22.1 4.7 30 467-496 2-31 (34)
308 PF11207 DUF2989: Protein of u 50.8 1.7E+02 0.0037 29.3 10.4 75 377-452 122-198 (203)
309 PF11848 DUF3368: Domain of un 50.3 46 0.001 24.7 5.1 33 595-627 13-45 (48)
310 PF04184 ST7: ST7 protein; In 50.2 4.5E+02 0.0097 30.2 19.3 74 400-473 263-338 (539)
311 PF07163 Pex26: Pex26 protein; 50.2 1.6E+02 0.0035 31.0 10.4 89 519-607 88-181 (309)
312 COG3947 Response regulator con 50.1 3.4E+02 0.0074 28.8 16.5 148 331-494 150-341 (361)
313 PF13929 mRNA_stabil: mRNA sta 48.8 3.6E+02 0.0077 28.7 15.8 118 373-490 140-262 (292)
314 KOG1464 COP9 signalosome, subu 48.4 3.4E+02 0.0074 28.3 18.6 273 373-660 39-342 (440)
315 PF13431 TPR_17: Tetratricopep 48.2 27 0.00059 23.7 3.3 25 462-486 9-33 (34)
316 KOG0403 Neoplastic transformat 48.0 4.5E+02 0.0097 29.6 19.2 62 589-651 514-575 (645)
317 KOG0276 Vesicle coat complex C 47.6 1.7E+02 0.0036 34.1 10.9 101 476-610 647-747 (794)
318 PF07719 TPR_2: Tetratricopept 47.6 41 0.00089 22.1 4.2 28 265-292 2-29 (34)
319 PHA02875 ankyrin repeat protei 45.8 3.6E+02 0.0079 30.1 14.1 191 318-550 36-231 (413)
320 KOG1941 Acetylcholine receptor 44.9 4.6E+02 0.0099 28.8 15.0 204 398-609 45-271 (518)
321 PF02259 FAT: FAT domain; Int 44.9 4.3E+02 0.0094 28.5 19.3 64 549-612 146-212 (352)
322 PF11848 DUF3368: Domain of un 43.3 65 0.0014 24.0 4.9 39 161-199 8-46 (48)
323 KOG3807 Predicted membrane pro 42.5 3.3E+02 0.0071 29.3 11.4 126 527-666 229-357 (556)
324 PF13762 MNE1: Mitochondrial s 42.3 3E+02 0.0066 26.0 11.3 113 310-445 10-128 (145)
325 PF13181 TPR_8: Tetratricopept 41.5 50 0.0011 21.8 3.9 28 467-494 2-29 (34)
326 COG4455 ImpE Protein of avirul 40.9 1.3E+02 0.0028 30.4 7.9 61 434-494 3-63 (273)
327 PF13174 TPR_6: Tetratricopept 40.8 47 0.001 21.5 3.6 26 471-496 5-30 (33)
328 PF10345 Cohesin_load: Cohesin 40.8 7E+02 0.015 29.8 40.5 166 167-341 72-252 (608)
329 KOG2063 Vacuolar assembly/sort 40.7 8.2E+02 0.018 30.5 24.2 59 231-294 310-376 (877)
330 COG4785 NlpI Lipoprotein NlpI, 39.5 4.3E+02 0.0093 26.9 14.5 85 202-294 77-163 (297)
331 PRK10564 maltose regulon perip 39.5 62 0.0013 34.3 5.8 45 344-399 251-295 (303)
332 COG2178 Predicted RNA-binding 38.6 3E+02 0.0066 27.3 9.8 60 370-431 38-102 (204)
333 PF07721 TPR_4: Tetratricopept 37.6 49 0.0011 20.8 3.0 20 233-252 6-25 (26)
334 KOG4648 Uncharacterized conser 37.5 84 0.0018 33.7 6.3 52 272-340 105-157 (536)
335 KOG4648 Uncharacterized conser 37.0 94 0.002 33.4 6.6 74 474-570 105-179 (536)
336 KOG4077 Cytochrome c oxidase, 36.5 1.7E+02 0.0038 26.8 7.2 57 416-473 69-125 (149)
337 PF06552 TOM20_plant: Plant sp 36.2 2.2E+02 0.0047 28.0 8.5 79 516-594 30-123 (186)
338 COG4105 ComL DNA uptake lipopr 36.1 5.2E+02 0.011 26.9 22.9 186 316-539 37-229 (254)
339 KOG1941 Acetylcholine receptor 36.1 6.2E+02 0.014 27.8 16.5 213 192-421 45-271 (518)
340 PF10366 Vps39_1: Vacuolar sor 35.6 2.1E+02 0.0045 25.5 7.8 26 399-424 42-67 (108)
341 PF11663 Toxin_YhaV: Toxin wit 35.5 28 0.0006 32.2 2.2 31 374-406 108-138 (140)
342 PF08311 Mad3_BUB1_I: Mad3/BUB 34.8 2.2E+02 0.0048 26.1 8.1 44 332-386 81-124 (126)
343 COG4649 Uncharacterized protei 33.8 4.7E+02 0.01 25.7 14.8 136 515-651 60-199 (221)
344 smart00540 LEM in nuclear memb 33.1 32 0.0007 25.1 1.8 23 2-25 9-31 (44)
345 PF11846 DUF3366: Domain of un 33.1 1.4E+02 0.003 29.5 7.2 54 240-293 120-173 (193)
346 COG3947 Response regulator con 32.6 1.6E+02 0.0036 31.1 7.4 99 151-254 223-339 (361)
347 cd08819 CARD_MDA5_2 Caspase ac 32.5 2.3E+02 0.005 24.2 7.0 38 373-415 48-85 (88)
348 COG4455 ImpE Protein of avirul 31.9 2.5E+02 0.0055 28.5 8.2 77 516-593 3-81 (273)
349 PF13181 TPR_8: Tetratricopept 31.6 97 0.0021 20.3 4.0 27 266-292 3-29 (34)
350 KOG4279 Serine/threonine prote 30.4 1.1E+03 0.023 28.7 14.9 182 211-424 184-394 (1226)
351 COG2178 Predicted RNA-binding 30.2 5E+02 0.011 25.9 9.8 73 530-611 19-96 (204)
352 smart00806 AIP3 Actin interact 28.8 1.6E+02 0.0036 32.8 7.1 26 1-26 233-258 (426)
353 PF07163 Pex26: Pex26 protein; 28.8 6.5E+02 0.014 26.7 10.9 92 271-384 90-181 (309)
354 PHA02875 ankyrin repeat protei 28.8 8.5E+02 0.018 27.1 16.9 210 370-619 8-230 (413)
355 PF06552 TOM20_plant: Plant sp 28.3 5.9E+02 0.013 25.1 11.7 62 464-546 66-139 (186)
356 TIGR03504 FimV_Cterm FimV C-te 28.2 93 0.002 22.7 3.5 26 366-391 4-29 (44)
357 PF11663 Toxin_YhaV: Toxin wit 27.7 59 0.0013 30.1 3.0 24 327-350 108-131 (140)
358 TIGR03504 FimV_Cterm FimV C-te 27.6 93 0.002 22.7 3.4 25 270-294 5-29 (44)
359 PF11846 DUF3366: Domain of un 27.4 2.8E+02 0.006 27.4 8.2 53 444-496 120-174 (193)
360 PF11838 ERAP1_C: ERAP1-like C 27.2 7.8E+02 0.017 26.2 16.9 114 482-609 146-262 (324)
361 PF11768 DUF3312: Protein of u 27.0 5.6E+02 0.012 29.8 11.0 14 483-496 495-508 (545)
362 COG5108 RPO41 Mitochondrial DN 26.5 3.8E+02 0.0082 31.7 9.5 77 195-276 33-115 (1117)
363 smart00386 HAT HAT (Half-A-TPR 26.3 1.3E+02 0.0027 19.1 3.9 29 446-474 1-29 (33)
364 TIGR02508 type_III_yscG type I 26.0 4.6E+02 0.01 23.2 8.2 79 205-294 20-98 (115)
365 COG2976 Uncharacterized protei 25.9 6.8E+02 0.015 25.0 13.5 87 237-344 98-189 (207)
366 PF14689 SPOB_a: Sensor_kinase 25.1 1.4E+02 0.0031 23.5 4.4 46 244-292 6-51 (62)
367 COG1747 Uncharacterized N-term 25.0 1.1E+03 0.024 27.2 24.7 164 395-579 65-235 (711)
368 PF14432 DYW_deaminase: DYW fa 24.4 22 0.00048 32.2 -0.4 41 755-801 26-74 (116)
369 PF13934 ELYS: Nuclear pore co 24.4 7.7E+02 0.017 25.2 12.7 107 516-633 78-186 (226)
370 PF10579 Rapsyn_N: Rapsyn N-te 24.3 1.9E+02 0.0042 24.2 5.0 46 561-606 18-65 (80)
371 TIGR02508 type_III_yscG type I 24.0 5.1E+02 0.011 22.9 8.1 53 439-496 46-98 (115)
372 KOG2066 Vacuolar assembly/sort 23.9 1.4E+03 0.03 27.9 27.6 163 162-342 363-533 (846)
373 COG5108 RPO41 Mitochondrial DN 23.3 3.4E+02 0.0075 32.0 8.4 49 401-449 33-82 (1117)
374 PF07064 RIC1: RIC1; InterPro 22.9 8.9E+02 0.019 25.3 15.0 91 552-651 156-252 (258)
375 KOG0687 26S proteasome regulat 22.7 1E+03 0.022 25.9 15.2 166 375-576 36-208 (393)
376 COG0735 Fur Fe2+/Zn2+ uptake r 22.7 3.1E+02 0.0067 25.8 7.0 49 336-397 8-56 (145)
377 PF14689 SPOB_a: Sensor_kinase 22.6 2E+02 0.0043 22.6 4.8 28 549-576 23-50 (62)
378 PF02259 FAT: FAT domain; Int 22.3 9.8E+02 0.021 25.6 22.6 195 196-424 4-212 (352)
379 PF10345 Cohesin_load: Cohesin 22.3 1.4E+03 0.03 27.3 39.4 299 161-460 106-481 (608)
380 smart00028 TPR Tetratricopepti 22.0 1.7E+02 0.0036 17.5 3.8 27 468-494 3-29 (34)
381 PF10579 Rapsyn_N: Rapsyn N-te 21.7 2E+02 0.0044 24.0 4.7 46 596-641 18-65 (80)
382 KOG2659 LisH motif-containing 21.4 7.6E+02 0.016 25.2 9.7 99 510-610 22-129 (228)
383 KOG3807 Predicted membrane pro 21.2 8.4E+02 0.018 26.3 10.2 109 326-460 228-339 (556)
384 PF13934 ELYS: Nuclear pore co 21.2 8.9E+02 0.019 24.7 12.4 105 365-480 80-186 (226)
385 cd07153 Fur_like Ferric uptake 21.1 1.9E+02 0.0041 25.8 5.1 49 159-207 4-52 (116)
386 PF12862 Apc5: Anaphase-promot 21.0 5.2E+02 0.011 22.0 7.7 21 236-256 49-69 (94)
387 COG2976 Uncharacterized protei 20.9 8.5E+02 0.019 24.4 13.3 131 156-294 55-189 (207)
388 PF14669 Asp_Glu_race_2: Putat 20.7 8.5E+02 0.018 24.3 13.5 150 389-539 1-206 (233)
389 PF10366 Vps39_1: Vacuolar sor 20.6 2.6E+02 0.0057 24.8 5.7 26 587-612 42-67 (108)
390 cd08819 CARD_MDA5_2 Caspase ac 20.5 5.5E+02 0.012 22.0 7.6 68 173-249 20-87 (88)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-80 Score=766.00 Aligned_cols=608 Identities=15% Similarity=0.133 Sum_probs=559.4
Q ss_pred HHHHHhhhhhcccccccccc---cccchhchHHHHHHHHhhhhhcccccccchhhhhhhcccccccccCC----------
Q 003016 86 ERIERLKFRQLASESKEFAG---DNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWR---------- 152 (857)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~~~~~~lk~~~~~d~~~~~~~~~~~~~~~~~~~~~---------- 152 (857)
..+.+|...++.|+..+++. +|.....+..++++|+.+++.|+..|+.+.+.++++ |.++
T Consensus 173 ~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~-------y~k~g~~~~A~~lf 245 (857)
T PLN03077 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM-------YVKCGDVVSARLVF 245 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHH-------HhcCCCHHHHHHHH
Confidence 34458988899999999864 677777889999999999999999999998888766 3333
Q ss_pred -----CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC
Q 003016 153 -----SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 153 -----~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
++..+|+.++..+.+.|.+++|+.+|.+|.+.|+.||..||+.+|.+|++.|+++.|.++|..+.+.+ ..||
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~d 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG---FAVD 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC---Cccc
Confidence 45567888888889999999999999999999999999999999999999999999999999998874 5589
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+||+||.+|+++|++++|.++|++|.. ||.++||+||.+|++.|++++|+++|++|.+.|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g------------- 384 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET-----KDAVSWTAMISGYEKNGLPDKALETYALMEQDN------------- 384 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------------
Confidence 99999999999999999999999999986 899999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.||..||+++|.+|++.|+++.|.++|+.|.+.|+.|+..+| |+||++|+++|++++|.++|++|
T Consensus 385 --~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~------------n~Li~~y~k~g~~~~A~~vf~~m 450 (857)
T PLN03077 385 --VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA------------NALIEMYSKCKCIDKALEVFHNI 450 (857)
T ss_pred --CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH------------HHHHHHHHHcCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999998 99999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCH
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNI 466 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~ 466 (857)
.++++ .+||+||.+|+++|+.++|+.+|++|.. ++.||..||+++|.+|++.|.++.+.+++..|.+ ++.+|.
T Consensus 451 ~~~d~----vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 451 PEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CCCCe----eeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 87654 4699999999999999999999999986 6999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 546 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~ 546 (857)
.++|+||++|+++|++++|.++|++| . ||.++||+||.+|+++|+.++|.++|++|.+.|+.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~---~---------------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH---E---------------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc---C---------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999987 2 89999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHH
Q 003016 547 LDQTKHAWLLVEASRAGKCHLLEHAFDSLL-EAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTEL 625 (857)
Q Consensus 547 pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~-~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~L 625 (857)
||..||+++|.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.+++++| +++||..+|++|
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHH
Confidence 999999999999999999999999999999 5699999999999999999999999999999999 799999999999
Q ss_pred HHHhhhc----------------------------------cCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHHHhc
Q 003016 626 FESNEDR----------------------------------ISRDKLEKLLNALCNCNAASSEITVSNL--SRALHALCR 669 (857)
Q Consensus 626 l~a~~~~----------------------------------g~~e~~~~l~~~m~~~g~~p~~~~~~~~--~~~l~~~~~ 669 (857)
+.+|..+ |+++++.++++.|++.|+. ++|+++|+ .+.+|.|..
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~-k~~g~s~ie~~~~~~~f~~ 742 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLT-VDPGCSWVEVKGKVHAFLT 742 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCC-CCCCccEEEECCEEEEEec
Confidence 9998744 5556777888999999999 89999998 788999999
Q ss_pred cCchhhhHhhhhccccccccCcchhhhhhhhhhhccCccccccccccccccccCCCCCC---cCCCccccccccCCCCcc
Q 003016 670 SEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQ---KTDVAVDIDSINHSSLSR 746 (857)
Q Consensus 670 ~~~~~~~~~~i~~~~~~v~~~~L~~l~~~~~~~~~g~vp~~~~~l~~~~~e~k~~~l~~---klaia~~~i~~~~~~~ir 746 (857)
+|++||..+.||. .|+.+.. +|++.||+|++++++ ++++|+||..|.+ |||||||||++|||+|||
T Consensus 743 ~d~~h~~~~~i~~--------~l~~l~~--~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~ 811 (857)
T PLN03077 743 DDESHPQIKEINT--------VLEGFYE--KMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIW 811 (857)
T ss_pred CCCCCcchHHHHH--------HHHHHHH--HHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEE
Confidence 9999999999999 6777777 777999999999998 5477889999887 999999999999999999
Q ss_pred ccC--cccccccccccccccCCCCCccccc
Q 003016 747 QAD--ADTEMFSKALSYIHSNDRPSNLCID 774 (857)
Q Consensus 747 i~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (857)
|.| ..|.|||.+.+||+.-.++-=|+=|
T Consensus 812 i~knlr~c~dch~~~k~~s~~~~r~i~~rd 841 (857)
T PLN03077 812 VTKNLYMCENCHNTVKFISKIVRREISVRD 841 (857)
T ss_pred EeCCCEeCccHHHHHHHHHHHhCeEEEEec
Confidence 964 5899999999999874444333333
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-77 Score=718.25 Aligned_cols=553 Identities=13% Similarity=0.145 Sum_probs=423.5
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSG-LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g-~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 230 (857)
..+...++.++..+.+.|.+.+|+.+|+.|...+ +.||..+|+.++.+|++.++++.|.++|..|.+.+ ..||..+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~~~~~ 160 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG---FEPDQYM 160 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCcchHH
Confidence 3345578999999999999999999999999864 78999999999999999999999999999998874 4579999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
||+||++|+++|+++.|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.+.| +
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---------------~ 220 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDG---------------S 220 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---------------C
Confidence 99999999999999999999999986 899999999999999999999999999999998 9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
.||..+|+.+|.+|++.|..+.+.+++..|.+.|+.||..+| |+||++|+++|++++|.++|++|.++
T Consensus 221 ~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~------------n~Li~~y~k~g~~~~A~~vf~~m~~~ 288 (697)
T PLN03081 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS------------CALIDMYSKCGDIEDARCVFDGMPEK 288 (697)
T ss_pred CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH------------HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999998 55666666666666666666665432
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHH
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTV 469 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~ 469 (857)
|..+||+||.+|+++|++++|+++|++|.. .|+.||..||+++|.+|++.|.+++|.++|..|.+ ++.||..+|
T Consensus 289 ----~~vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 289 ----TTVAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred ----ChhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 344566666666666666666666666655 55666666666666666666666666666666555 455666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~ 549 (857)
|+||++|+++|++++|.++|++|. .||.+|||+||.+|+++|+.++|.++|++|.+.|+.||.
T Consensus 364 ~~Li~~y~k~G~~~~A~~vf~~m~-----------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 364 TALVDLYSKWGRMEDARNVFDRMP-----------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC-----------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 666666666666666666666552 255556666666666666666666666666655666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 003016 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFES 628 (857)
Q Consensus 550 ~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a 628 (857)
.||++++.+|++.|.+++|.++|+.|.+. |+.|+..+|++||++|+++|++++|.+++++| ++.|+..+|++|+.+
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTA 503 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHH
Confidence 66666666666666666666666666542 55566666666666666666666666665555 555555555555555
Q ss_pred h----------------------------------hhccCHHHHHHHHHHHHhCCCCCChhhHHHH--HHHHHHHhccCc
Q 003016 629 N----------------------------------EDRISRDKLEKLLNALCNCNAASSEITVSNL--SRALHALCRSEK 672 (857)
Q Consensus 629 ~----------------------------------~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~--~~~l~~~~~~~~ 672 (857)
| .+.|++++|.++++.|++.|+. +.|+++|+ .+.+|.|..++.
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~-k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS-MHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc-cCCCeeEEEECCeEEEEccCCC
Confidence 5 4556667777888888888988 78888877 677899999999
Q ss_pred hhhhHhhhhccccccccCcchhhhhhhhhhhccCccccccccccccccccCCCCCC---cCCCccccccccCCCCccccC
Q 003016 673 ERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMFENADLGADPLPQ---KTDVAVDIDSINHSSLSRQAD 749 (857)
Q Consensus 673 ~~~~~~~i~~~~~~v~~~~L~~l~~~~~~~~~g~vp~~~~~l~~~~~e~k~~~l~~---klaia~~~i~~~~~~~iri~~ 749 (857)
.||..+.|+. .|+.+.. +|++.||+|++++++|++++++|+..|.+ |||||||+|++|||+||||.|
T Consensus 583 ~h~~~~~i~~--------~l~~l~~--~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~k 652 (697)
T PLN03081 583 LHPQSREIYQ--------KLDELMK--EISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQ 652 (697)
T ss_pred CCccHHHHHH--------HHHHHHH--HHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEec
Confidence 9999998988 5666666 77799999999999999999999998887 999999999999999999954
Q ss_pred --cccccccccccccccCCCCCcccccc
Q 003016 750 --ADTEMFSKALSYIHSNDRPSNLCIDM 775 (857)
Q Consensus 750 --~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (857)
..|.|||.+.+||+.-.++--|+=|.
T Consensus 653 nlr~c~dch~~~k~~s~~~~r~i~~rd~ 680 (697)
T PLN03081 653 SHRICKDCHKVIKFIALVTKREIVVRDA 680 (697)
T ss_pred CCEECCCchhhHHHHhhhcceEEEEecC
Confidence 58999999999998755544444443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-70 Score=674.34 Aligned_cols=696 Identities=15% Similarity=0.090 Sum_probs=567.8
Q ss_pred HHHHhhhhhcccccccccc---cccchhchHHHHHHHHhhhhhcccccccchhhhhhhccccc--------ccccCCCcH
Q 003016 87 RIERLKFRQLASESKEFAG---DNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWH--------PEKRWRSEA 155 (857)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~~~~~~~~~lk~~~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~ 155 (857)
.+.+|...++.++..++.. +|.....+..+..+|..+++.+...|+.+.+.++++..... ...-..+++
T Consensus 73 l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~ 152 (857)
T PLN03077 73 LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL 152 (857)
T ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCe
Confidence 3335555555555555432 56666778889999999999999888888888776511000 000123566
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
.+|+.++..+++.|.+++|+.+|++|...|+.||.+||+.++++|+..+++..+.++|..+.+.+ ..||+++||+||
T Consensus 153 ~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~n~Li 229 (857)
T PLN03077 153 FSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG---FELDVDVVNALI 229 (857)
T ss_pred eEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC---CCcccchHhHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999874 457999999999
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~ 315 (857)
.+|+++|++++|.++|++|++ ||.+|||+||.+|++.|++++|+++|.+|...| +.||.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g---------------~~Pd~~ 289 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELS---------------VDPDLM 289 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC---------------CCCChh
Confidence 999999999999999999986 899999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------------HhHHHHHHHHHHHcCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYR-------------------RCLLKVLVRAFWEEGK 376 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~-------------------~~~~~~Li~~y~k~g~ 376 (857)
||+++|.+|++.|+++.|.+++..|.+.|+.||..+|++++.+|. ..+||+||.+|++.|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999888887 6688999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 377 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.+++..|.+ .|+.|+..+|++||++|+++|++++|.++|+
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998889999999999999999999999999999999988 7888999999999999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHH
Q 003016 457 HMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 536 (857)
Q Consensus 457 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l 536 (857)
.|.+ +|+++||+||.+|+++|+.++|+++|++|.. + ++||.+||+++|.+|++.|.++.+.++
T Consensus 449 ~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~-------------~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 449 NIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T-------------LKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred hCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C-------------CCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 8886 7888999999999999999999999999974 4 889999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCc
Q 003016 537 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFH 616 (857)
Q Consensus 537 ~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~ 616 (857)
+..|.+.|+.+|..++++||++|+++|++++|.++|+.| .||..+||+||.+|+++|+.++|+++|++|...|+.
T Consensus 512 ~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999987 589999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHhccCchhhhHhhhhcccccccc------
Q 003016 617 ITERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITVSNLSRALHALCRSEKERDLSSSAHFGSQAIDI------ 689 (857)
Q Consensus 617 p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~-~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~v~~------ 689 (857)
||..||..++.+|.+.|.++++.++++.|. +.|+.|+...+ ...+..++..|..+++.+.+..++...+.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y---~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY---ACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH---HHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 999999999999999999999999999999 68888765444 44588888899999998888776422221
Q ss_pred -----------------------------------------Ccchhhhh-hhhhhhccCcc--ccccccccccccccCCC
Q 003016 690 -----------------------------------------SPLHGIHE-AFDVKETENVP--SSSASMMFENADLGADP 725 (857)
Q Consensus 690 -----------------------------------------~~L~~l~~-~~~~~~~g~vp--~~~~~l~~~~~e~k~~~ 725 (857)
+.++++.+ .-.|++.|..+ .++|+-.+ .+
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~----~~--- 736 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK----GK--- 736 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC----CE---
Confidence 22222222 11222333322 22222110 00
Q ss_pred CCCcCCCccccccccCCCCccccCcccccccccccccccCCCCCcccccccccccccccccCChhhhHHHHHhhhhcccC
Q 003016 726 LPQKTDVAVDIDSINHSSLSRQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 805 (857)
Q Consensus 726 l~~klaia~~~i~~~~~~~iri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (857)
-..+.-|.-+.|....|.-...++....+..||+|+ ++++. |+++++|+..+.+|||+|-- +.||-....
T Consensus 737 ---~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~---~~~~~-~~~~~~k~~~~~~hse~la~---a~~l~~~~~ 806 (857)
T PLN03077 737 ---VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS---ESSSM-DEIEVSKDDIFCGHSERLAI---AFGLINTVP 806 (857)
T ss_pred ---EEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC---cchhc-cccHHHHHHHHHhccHHHHH---HHhhhcCCC
Confidence 022334555666666666667777778888999999 77766 77889999999999999976 777766544
Q ss_pred CchhhhhhhcccccCCcccCCCCChHHHHHHHHHhhh---ccCccc-ccccCCC
Q 003016 806 DNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESRE---KDGIFF-PFEHGKK 855 (857)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~ 855 (857)
. ..|.+-+. -|+=+.|-+-.-.+++|. -|| ||..=| ||+.|+=
T Consensus 807 ~-~~i~i~kn-lr~c~dch~~~k~~s~~~-----~r~i~~rd~~rfh~f~~g~c 853 (857)
T PLN03077 807 G-MPIWVTKN-LYMCENCHNTVKFISKIV-----RREISVRDTEQFHHFKDGEC 853 (857)
T ss_pred C-CeEEEeCC-CEeCccHHHHHHHHHHHh-----CeEEEEecCCcceeCCCCcc
Confidence 3 23333332 133344433333444443 355 666544 5666653
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-63 Score=603.54 Aligned_cols=431 Identities=16% Similarity=0.226 Sum_probs=253.8
Q ss_pred ccCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC
Q 003016 149 KRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLM-FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 149 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~-p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
.....+...+..++..+.+.|.+.+|+++|++|.+.|+. ++..+++.++.+|++.|.++.|..+|+.|. .||
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd 436 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPT 436 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCC
Confidence 344556777888888888888888888888888888753 455555556666666666666666665552 145
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+||.||.+|++.|+++.|.++|+.|.+. |+.||..+||+||.+|++.|++++|.++|++|...|
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G------------- 502 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG------------- 502 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-------------
Confidence 666666666666666666666666666653 566666666666666666666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.||.++||+||.+|++.|++++|.++|++|.+.|+.||..|| |+||.+|++.|++++|.++|++|
T Consensus 503 --v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTY------------nsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 503 --VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF------------NALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred --CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHH------------HHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666665 55555555555555555555555
Q ss_pred hh--cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCC
Q 003016 388 EQ--RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEP 464 (857)
Q Consensus 388 ~~--~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p 464 (857)
.. .++.||..+|++||.+|++.|++++|.++|++|.+ .++.|+..+|+.+|.+|++.|++++|.++|++|.+ ++.|
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 43 34555555555555555555555555555555555 45555555555555555555555555555555554 4555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
|..+|++||++|++.|++++|.++|++|.+.| +.||..+|+++|.+|++.|++++|.++|++|.+.|
T Consensus 648 D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G-------------~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQG-------------IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555555555555555 55555555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHH
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 624 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~ 624 (857)
+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.+++++|...|+.||..+|++
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHH
Q 003016 625 LFES 628 (857)
Q Consensus 625 Ll~a 628 (857)
|+..
T Consensus 795 LIgl 798 (1060)
T PLN03218 795 ITGL 798 (1060)
T ss_pred HHHH
Confidence 5543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-61 Score=585.67 Aligned_cols=456 Identities=15% Similarity=0.244 Sum_probs=332.5
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
++..+|+.|+..+++.|.+++|+.+|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.+ ..||..+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCCCHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777776553 346777777
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc--CCChhhhhhhhhcCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ--KPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~~l~~m~~k~f~~~~ 310 (857)
+||.+|++.|++++|.++|++|... |+.||.+|||+||.+|++.|++++|.++|++|.. .| +
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g---------------i 575 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP---------------I 575 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC---------------C
Confidence 7777777777777777777777763 7777777777777777777777777777777764 34 6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
.||.++|+++|.+|++.|++++|.++|+.|.+.|+.|+..+| |+||.+|++.|++++|.++|++|.+.
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty------------nsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY------------TIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777777777777777777777776 77777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHH
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTV 469 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~ 469 (857)
|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++|++++|.++|+.|.. ++.||..+|
T Consensus 644 Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvty 722 (1060)
T PLN03218 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7777777777777777777777777777777777 67777777777777777777777777777777766 677777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~ 549 (857)
|+||.+|++.|++++|.++|++|...| +.||..||+++|.+|++.|+++.|.++|.+|.+.|+.||.
T Consensus 723 N~LI~gy~k~G~~eeAlelf~eM~~~G-------------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 723 NALITALCEGNQLPKALEVLSEMKRLG-------------LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 777777777777777777777777777 7777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHH----HcC-------------------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 550 TKHAWLLVEAS----RAG-------------------KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 550 ~t~~~Ll~~~~----~~G-------------------~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
.+|++++..|. +++ ..++|..+|++|.+.|+.||..+|+.+|.+++..+..+.+..+
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 77777765532 111 2355777777777777777777777777666666777777777
Q ss_pred HHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChh
Q 003016 607 INAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEI 655 (857)
Q Consensus 607 ~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~ 655 (857)
++.|...+..|+..+|++|+.+++.. .++|..++++|.+.|+.|+..
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77776667777777777777776543 356777777777777776543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-62 Score=592.11 Aligned_cols=585 Identities=14% Similarity=0.143 Sum_probs=492.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH
Q 003016 186 LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA 265 (857)
Q Consensus 186 ~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~ 265 (857)
..++..+++.+|.++.+.|++++|.++|++|...+ +..||..+|++++.+|++.++++.|.+++..|... |+.||..
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQY 159 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchH
Confidence 34667799999999999999999999999997643 23479999999999999999999999999999985 9999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
+||.|+.+|++.|++++|.++|++| ..||.++||++|.+|++.|++++|.++|++|.+.|+
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m-------------------~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 220 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEM-------------------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcC-------------------CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999 578999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.||..|| +.++.+|++.|..+.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|..
T Consensus 221 ~p~~~t~------------~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 287 (697)
T PLN03081 221 DAEPRTF------------VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE- 287 (697)
T ss_pred CCChhhH------------HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-
Confidence 9999998 899999999999999999999999999999999999999999999999999999999965
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 504 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~ 504 (857)
+|.++||++|.+|++.|++++|.++|++|.+ ++.||..||+++|.+|++.|.+++|.+++.+|.+.|
T Consensus 288 ----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------- 355 (697)
T PLN03081 288 ----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-------- 355 (697)
T ss_pred ----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC--------
Confidence 6999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003016 505 GDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP 584 (857)
Q Consensus 505 ~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~ 584 (857)
+.||..+|++||.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 356 -----~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 356 -----FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred -----CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 99999999999999999999999999999995 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhh-CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 003016 585 LFFTEMLIQAIVQSNYEKAVALINAMAY-APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRA 663 (857)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~l~~~M~~-~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~ 663 (857)
.||+++|.+|.+.|.+++|.++|+.|.. .|+.|+..+|+.++.++++.|++++|.++++.| ++.|+.. .+...
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~---~~~~L 500 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVN---MWAAL 500 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHH---HHHHH
Confidence 9999999999999999999999999976 699999999999999999999999999988654 5555443 34555
Q ss_pred HHHHhccCchhhhHhhhhccc----cccc-----------cCcchhhhhhh-hhhhccC--ccccccccccccccccCCC
Q 003016 664 LHALCRSEKERDLSSSAHFGS----QAID-----------ISPLHGIHEAF-DVKETEN--VPSSSASMMFENADLGADP 725 (857)
Q Consensus 664 l~~~~~~~~~~~~~~~i~~~~----~~v~-----------~~~L~~l~~~~-~~~~~g~--vp~~~~~l~~~~~e~k~~~ 725 (857)
+.+.+..+..+.+......+. .++. .+.++++.+++ +|++.|. .|.++|+-.+ .+
T Consensus 501 l~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~----~~--- 573 (697)
T PLN03081 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVK----KQ--- 573 (697)
T ss_pred HHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEEC----Ce---
Confidence 666666666655544322211 1111 16777777744 3456775 4666665221 00
Q ss_pred CCCcCCCccccccccCCCCccccCcccccccccccccccCCCCCcccccccccccccccccCChhhhHHHHHhhhhcccC
Q 003016 726 LPQKTDVAVDIDSINHSSLSRQADADTEMFSKALSYIHSNDRPSNLCIDMEGLADDWASSEHSDYLDKELAALYLSKQSQ 805 (857)
Q Consensus 726 l~~klaia~~~i~~~~~~~iri~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (857)
-..+..|..+.|....|.-....+....+..||.|+ ++++..|+++++|+..+.+|||+|-- +.||....+
T Consensus 574 ---~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~---~~~~~~~~~~~~~~~~~~~hsekla~---a~~l~~~~~ 644 (697)
T PLN03081 574 ---DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAE---ENELLPDVDEDEEKVSGRYHSEKLAI---AFGLINTSE 644 (697)
T ss_pred ---EEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCC---cchhhccccHHHHHHHHHhccHHHHH---HhhCccCCC
Confidence 022334555666666666666677777788899999 99999999999999999999999976 777776544
Q ss_pred CchhhhhhhcccccCCcccCCCCChHHHHHHHHHhhh---ccCccc-ccccCCC
Q 003016 806 DNDVVDLQKSMNRVGGSRRSELPSASEILEAWKESRE---KDGIFF-PFEHGKK 855 (857)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~ 855 (857)
.. .|.+-+.. |+=+.|-+-.-.+++|. -|| ||..=| ||..|+=
T Consensus 645 ~~-~i~i~knl-r~c~dch~~~k~~s~~~-----~r~i~~rd~~rfh~f~~g~c 691 (697)
T PLN03081 645 WT-PLQITQSH-RICKDCHKVIKFIALVT-----KREIVVRDASRFHHFKLGKC 691 (697)
T ss_pred CC-eEEEecCC-EECCCchhhHHHHhhhc-----ceEEEEecCCccccCCCCcc
Confidence 33 33333331 33333433333444432 355 666544 5776653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=3e-21 Score=240.53 Aligned_cols=456 Identities=11% Similarity=0.041 Sum_probs=328.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 162 VDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 162 ~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
...+.+.|.+++|..++..+.... +.+..++..+...+...|+++.|.+.|+.+++.. +.+...+..+...|...
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE----PDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHC
Confidence 344455566666666666665432 3455566666666666677777777776665432 22455666666666677
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
|++++|.+.|+.+... .+.+..++..+...+.+.|+.++|..+|.++...+ +.+...+..+.
T Consensus 513 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~l~ 574 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN----------------PQEIEPALALA 574 (899)
T ss_pred CCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------ccchhHHHHHH
Confidence 7777777777766652 23356666666667777777777777777665542 34556677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 401 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~ 401 (857)
..+...|++++|..+++.+.+.. ..+..+ |..+...|.+.|++++|...|+.+.+.+. .+...|..
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 640 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEA------------WLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLL 640 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHH
Confidence 77788888888888888776543 223333 37888888888888888888888876542 34556788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
+..+|.+.|++++|...|+++.. ..+.+..++..+...+...|++++|..+++.+....+.+...+..+...|.+.|+
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 718 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD 718 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC
Confidence 88888888888888888888876 2344567788888888888888888888888887666677888888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
+++|.+.|.++...+ |+..++..+..++...|++++|.+.+..+.+.. +.+...+..+...|..
T Consensus 719 ~~~A~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~ 782 (899)
T TIGR02917 719 YPAAIQAYRKALKRA---------------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLA 782 (899)
T ss_pred HHHHHHHHHHHHhhC---------------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 999999998888755 666777788888888899999999888888743 4466788888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHhhhccCHHHHHH
Q 003016 562 AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHI-TERQWTELFESNEDRISRDKLEK 640 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p-~~~~~~~Ll~a~~~~g~~e~~~~ 640 (857)
.|++++|..+|+.+.+.. ++++.+++.+...+...|+ .+|+..+++.... .| +..++..+-..+...|+.+.|..
T Consensus 783 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 783 QKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred CcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888763 4567888888888888888 7799998887643 22 33566677777888899999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHHHhccCchhhhHhhh
Q 003016 641 LLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSSSA 680 (857)
Q Consensus 641 l~~~m~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~i 680 (857)
.++.+.+.+.. .+.+. ......++..|+..++.+.+
T Consensus 859 ~~~~a~~~~~~--~~~~~--~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 859 LLRKAVNIAPE--AAAIR--YHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHhhCCC--ChHHH--HHHHHHHHHcCCHHHHHHHH
Confidence 99999877643 33222 33355566777777777643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=4.3e-21 Score=239.11 Aligned_cols=435 Identities=12% Similarity=0.030 Sum_probs=373.8
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
.+...+..+...+...|.+++|...|.++.+.. +.+...+..+...+...|+++.|.+.++.+.... +.+..+++
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~ 537 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID----PKNLRAIL 537 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cCcHHHHH
Confidence 455677778888889999999999999998764 3455677888889999999999999999998753 34788999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.+...|.+.|+.++|...|+++... .+.+...+..+...|...|++++|..+++.+... .+.
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~ 599 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADA----------------APD 599 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCC
Confidence 9999999999999999999999873 3456788999999999999999999999999875 456
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
+..+|..+..++...|++++|...|+.+.+.. |+ ... +..+...|.+.|++++|..+|+++.+..
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALA------------LLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH------------HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 78899999999999999999999999998754 33 333 3789999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 392 VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 392 ~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
. .+..+|..++..+...|++++|..+++.+.. . .+.+...+..+...+...|++++|...|..+.... |+..++..
T Consensus 666 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 741 (899)
T TIGR02917 666 P-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQK-Q-HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSSQNAIK 741 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h-CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCchHHHH
Confidence 2 3567899999999999999999999999987 3 35567788888999999999999999999998732 55578888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t 551 (857)
+..+|.+.|++++|.+.+.++.... ..+...+..+...|...|+.++|.++|+++.+.. +.+..+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 806 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTH--------------PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVV 806 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 9999999999999999999998865 2366788888899999999999999999999864 456788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 003016 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNED 631 (857)
Q Consensus 552 ~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~ 631 (857)
++.+...+...|+ .+|..+++.+.+.. +-+...+..+...+...|++++|...++++...+.. +..++..+..++..
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 9999999999999 88999999988752 235567788888899999999999999999876543 78899999999999
Q ss_pred ccCHHHHHHHHHHHH
Q 003016 632 RISRDKLEKLLNALC 646 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~ 646 (857)
.|+.++|.++++.|.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=6.1e-18 Score=190.49 Aligned_cols=314 Identities=12% Similarity=0.129 Sum_probs=236.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC---HHHHHHHHHHHH
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---IAAYHSVAVTLG 275 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd---~~t~~~li~~~~ 275 (857)
.+...|+++.|...|..+++.. +.+..++..+...|.+.|++++|..+++.+... +..++ ...|..+...|.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Confidence 3456688888888888887642 235678888888888889999999988888763 11111 356788888888
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
+.|++++|..+|.++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 119 ~~g~~~~A~~~~~~~l~~~----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--- 179 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG----------------DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--- 179 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC----------------cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---
Confidence 8999999999999887642 456778888888899999999999999988876543322111
Q ss_pred HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
...+..+...|.+.|+.++|...|+++.+.+. .+...+..+...|.+.|++++|..+|+++.. .+......++
T Consensus 180 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~ 252 (389)
T PRK11788 180 -----AHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVL 252 (389)
T ss_pred -----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHH
Confidence 00136677788889999999999998876542 2355677788889999999999999999876 2222224567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 515 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~ 515 (857)
+.+..+|.+.|++++|...++.+... .|+...+..+...+.+.|++++|..+|+++.+.. |+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~---------------P~~~ 316 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEE-YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH---------------PSLR 316 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------cCHH
Confidence 88888888999999999988888763 3566667888888999999999999998888744 8888
Q ss_pred HhhhhHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003016 516 TYSSMLEASAT---AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565 (857)
Q Consensus 516 t~~~ll~a~~~---~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~ 565 (857)
+++.++..+.. .|+.+++..++++|.+.++.|++. ..|++||..
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 88888877664 458888888999888888777776 336666653
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=2.8e-17 Score=185.15 Aligned_cols=303 Identities=11% Similarity=0.064 Sum_probs=210.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (857)
..+...|++++|...|.++.... +.+..+|..+...+...|++++|..+++.+...+..++...
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 106 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD----------------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQR 106 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC----------------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHH
Confidence 34456677777777777776642 23455667777777777777777777777766432222111
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 352 YGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 352 ~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
. ..+..|...|.+.|++++|..+|+++.+.+ ..+..+++.++..|.+.|++++|.+.++.+.. .+..+.
T Consensus 107 ~---------~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 175 (389)
T PRK11788 107 L---------LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK-LGGDSL 175 (389)
T ss_pred H---------HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH-hcCCcc
Confidence 0 113667777777778888887777776643 23455677777788888888888888877766 332221
Q ss_pred ----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 003016 432 ----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507 (857)
Q Consensus 432 ----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~ 507 (857)
...+..+...+.+.|++++|...|+++.+..+.+...+..+...|.+.|++++|.++|+++...+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------- 244 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD----------- 244 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------
Confidence 12345566667778888888888888776434456677778888888888888888888887644
Q ss_pred CCCCCC--HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003016 508 APLKPD--EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 585 (857)
Q Consensus 508 ~~~~pd--~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~ 585 (857)
|+ ..+++.+..+|...|++++|...++.+.+. .|+...+..+...+.+.|++++|..+++.+.+. .|+..
T Consensus 245 ----p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~ 316 (389)
T PRK11788 245 ----PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLR 316 (389)
T ss_pred ----hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHH
Confidence 43 356777888888888888888888888764 466666677777888888888888888877664 57777
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHhhhCCCccCHH
Q 003016 586 FFTEMLIQAIV---QSNYEKAVALINAMAYAPFHITER 620 (857)
Q Consensus 586 ~~~~li~~~~~---~g~~~~A~~l~~~M~~~~~~p~~~ 620 (857)
.++.++..+.. .|+.++|+.++++|...++.|++.
T Consensus 317 ~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 317 GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88877777664 457888888888887766666554
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.4e-14 Score=150.78 Aligned_cols=450 Identities=13% Similarity=0.094 Sum_probs=329.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 003016 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (857)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~ 233 (857)
.+++-+.|+. |...+.+.++.-+|+.|+..|+..+...-..|++.-+-.++-+--..-+++.+..... ...+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~-~E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNF-GEDSTSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccc-cccccccc--
Confidence 4455566655 5566778888899999999999999888777777655433222222223333322111 12244455
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd 313 (857)
|.|.+.+ -+|+..+ .+..||.+||.|+|+-...+.|.+++.+-.... .+.+
T Consensus 191 ------K~G~vAd--L~~E~~P------KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---------------~kv~ 241 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP------KTDETVSIMIAGLCKFSSLERARELYKEHRAAK---------------GKVY 241 (625)
T ss_pred ------ccccHHH--HHHhhcC------CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---------------heee
Confidence 4455444 4555544 477899999999999999999999999998876 7889
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHH----HHHHHHHhh
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEA----VAAVRNMEQ 389 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A----~~lf~~m~~ 389 (857)
..+||.+|.+-.- ....++..+|....+.||..|| |+++.+.++.|+++.| .+++.+|++
T Consensus 242 ~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~Tf------------NalL~c~akfg~F~~ar~aalqil~EmKe 305 (625)
T KOG4422|consen 242 REAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTF------------NALLSCAAKFGKFEDARKAALQILGEMKE 305 (625)
T ss_pred HHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhH------------HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 9999999988553 3337899999999999999999 9999999999988765 567788999
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHh-cCC--CC---C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 390 RGVVGTASVYYELACCLCNNGRWQD-AMLVVEKIKS-LRH--SK---P-LEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 390 ~~~~~d~~t~~~lI~~~~~~g~~~~-A~~l~~~m~~-~~g--~~---p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
-|+.|...+|..+|.-+++-++..+ |..++.+++. ..| ++ | |..-|...+..|.+..+.+.|.++..-...|
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 9999999999999999999888754 4555555543 112 22 2 4456888899999999999999999988874
Q ss_pred -----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHH
Q 003016 462 -----CEPNI---GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 462 -----~~p~~---~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 533 (857)
+.|+. .-|..+..+.|+....+.-+..++.|.-.- +-|+..+...++.|....+.++..
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~-------------y~p~~~~m~~~lrA~~v~~~~e~i 452 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA-------------YFPHSQTMIHLLRALDVANRLEVI 452 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce-------------ecCCchhHHHHHHHHhhcCcchhH
Confidence 44443 346778888999999999999999998766 779999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CH-------------HHHHHHH-------HHHHHCCCCCCHHHHHHHHH
Q 003016 534 EYVYKGMALSGCQLDQTKHAWLLVEASRAG-KC-------------HLLEHAF-------DSLLEAGEIPHPLFFTEMLI 592 (857)
Q Consensus 534 ~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G-~~-------------~~A~~~~-------~~m~~~gi~p~~~~~~~li~ 592 (857)
-+++..++..|...+...-.-++..+++.. .. +-|..++ .+|..... .....+++..
T Consensus 453 pRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~ 530 (625)
T KOG4422|consen 453 PRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAI 530 (625)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHH
Confidence 999999988875555444444444444333 00 0011222 22333333 4567788888
Q ss_pred HHHHcCCHHHHHHHHHHhhhCC----CccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHh
Q 003016 593 QAIVQSNYEKAVALINAMAYAP----FHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHALC 668 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M~~~~----~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~l~~~~ 668 (857)
.+.|.|..++|.+++.-....+ ..|....+.-|+.+.....+...|..+++.|...+ .+.+.-+.+.++.-|
T Consensus 531 Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n----~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 531 LLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN----LPICEGLAQRIMEDF 606 (625)
T ss_pred HHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----chhhhHHHHHHHHhc
Confidence 9999999999999999885543 44555667788889999999999999999997664 444555666677655
Q ss_pred ccC
Q 003016 669 RSE 671 (857)
Q Consensus 669 ~~~ 671 (857)
.-+
T Consensus 607 ~iN 609 (625)
T KOG4422|consen 607 AIN 609 (625)
T ss_pred CcC
Confidence 544
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=6.3e-13 Score=168.89 Aligned_cols=445 Identities=10% Similarity=0.012 Sum_probs=305.5
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
.....+..|...+..+......|+... ...-..+...|++++|...|+.+++.. +.+..++..|...|.+.|+++
T Consensus 246 p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~----P~~~~a~~~Lg~~~~~~g~~~ 320 (1157)
T PRK11447 246 SDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN----PKDSEALGALGQAYSQQGDRA 320 (1157)
T ss_pred CCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHH
Confidence 333334455555555444332333222 122345667899999999999998753 237889999999999999999
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSV------------AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd 313 (857)
+|+..|++..+...-.++...|..+ ...+.+.|++++|...|++..... +.+
T Consensus 321 eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~----------------P~~ 384 (1157)
T PRK11447 321 RAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD----------------NTD 384 (1157)
T ss_pred HHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCC
Confidence 9999999988732111222223222 345678999999999999998853 446
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH------------------------------Hh
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMESYR------------------------------RC 362 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~------------------------------~~ 362 (857)
...+..+...+...|++++|.+.|++..+.. |+ ...+..+...+. ..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~ 462 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQND 462 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 7778888899999999999999999998753 33 222211111110 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
.+..+...+...|++++|...|++..+.+.. +...+..+...|.+.|++++|...|++..... +.+...+..+...+
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~--P~~~~~~~a~al~l 539 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK--PNDPEQVYAYGLYL 539 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 2234556677788888888888887766532 34556677788888888888888888876522 12333333344455
Q ss_pred HcCCCHHHHHHHHHHHhhC-CCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 443 MDGGHIDDCISIFQHMKDH-CEPNIG---------TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~-~~p~~~---------~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
...++.++|...++.+... ..++.. .+..+...+...|+.++|.++++. ...
T Consensus 540 ~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------------------~p~ 601 (1157)
T PRK11447 540 SGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------------------QPP 601 (1157)
T ss_pred HhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------------------CCC
Confidence 6778888888888776541 112211 123445667788888888888772 223
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEML 591 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li 591 (857)
+...+..+...+...|+.++|+..|++..+.. +.+...+..+...|...|+.++|...++...+. .| +...+..+.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la 678 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVA 678 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHH
Confidence 44566677788889999999999999998742 334678888999999999999999999987754 33 455667777
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC-Ccc----CHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhH
Q 003016 592 IQAIVQSNYEKAVALINAMAYAP-FHI----TERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITV 657 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~~~~-~~p----~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~-~~g~~p~~~~~ 657 (857)
..+...|++++|.++++++.... -.| +...+..+-..+...|+.+.|...++... ..|+.|..|..
T Consensus 679 ~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~p~~ 750 (1157)
T PRK11447 679 LAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTRPQD 750 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 78888999999999999976532 222 22455556667788899999999887765 44566655553
No 13
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=2.5e-12 Score=163.44 Aligned_cols=444 Identities=9% Similarity=-0.021 Sum_probs=303.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~ 237 (857)
...-+.+...|.+++|+..|+...... +|+.. ....+.......|+.++|++.++.+.+.. +.+...+..+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----P~~~~~~~~LA~l 190 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 334456778899999999999988654 34432 11112222234589999999999987753 2367788899999
Q ss_pred HHHcCChhHHHHHHHHhHHcCC-----------------CCCC-HHHHH-------------------------------
Q 003016 238 LGKAGRPHEALRIFNLMLEDCN-----------------LYPD-IAAYH------------------------------- 268 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~g-----------------i~pd-~~t~~------------------------------- 268 (857)
+...|+.++|+..|+++..... ..++ ...+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999998754210 0000 00010
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 269 ---SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 269 ---~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
.....+...|++++|...|++..+.. +.|...+..+..++.+.|++++|...|++..+...
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~----------------P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN----------------PKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11234567788999999998887742 34788899999999999999999999999987643
Q ss_pred CC-CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 346 KP-SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 346 ~p-d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.. +...+..++..........+...+.+.|++++|...|++..+... .+...+..+...|...|++++|+..|++..+
T Consensus 335 ~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~ 413 (1157)
T PRK11447 335 HSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALR 413 (1157)
T ss_pred CccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 111221222111111112335567788999999999998887653 3455677788888999999999999988876
Q ss_pred cCCCCCcHHHHH------------------------------------------HHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 425 LRHSKPLEITFT------------------------------------------GLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 425 ~~g~~pd~~t~~------------------------------------------~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
.. +.+...+. .+...+...|++++|...|++..+..
T Consensus 414 ~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~ 491 (1157)
T PRK11447 414 MD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD 491 (1157)
T ss_pred hC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 21 11122221 12234556899999999999988755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhh-----------------------
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYS----------------------- 518 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~----------------------- 518 (857)
+-+...+..+...|.+.|++++|...|++..... |+. ..+.
T Consensus 492 P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~---------------P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~ 556 (1157)
T PRK11447 492 PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK---------------PNDPEQVYAYGLYLSGSDRDRAALAHLNTLP 556 (1157)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 5567788889999999999999999999987744 321 1111
Q ss_pred ---------------------hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 519 ---------------------SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 519 ---------------------~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
.+...+...|+.++|..+++ ..+.+...+..+...+.+.|++++|...|+...+
T Consensus 557 ~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 557 RAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred chhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12233444556666665554 1234455666777778888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 578 AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 578 ~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~-~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
.. +.+...+..+...+...|++++|+..++.... ..|+ ..++..+-.++...|+.++|.++++.+.+..
T Consensus 632 ~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 632 RE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 52 23567888888888899999999999987653 3333 3455556666777889999999998887654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=1.9e-13 Score=162.77 Aligned_cols=332 Identities=10% Similarity=-0.002 Sum_probs=243.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH
Q 003016 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI 237 (857)
Q Consensus 158 ~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~ 237 (857)
...++..+.+.|.+.+|..+++........+ ...+..+..++...|+++.|...++.+....+ .+...+..+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P----~~~~a~~~la~~ 119 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNV----CQPEDVLLVASV 119 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHH
Confidence 3566677778899999999988888775333 33444555666678999999999988876532 356678888888
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
|.+.|++++|...|++.... -+.+...|..+...+...|++++|...++.+.... +.+...+
T Consensus 120 l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----------------P~~~~a~ 181 (656)
T PRK15174 120 LLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV----------------PPRGDMI 181 (656)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------CCCHHHH
Confidence 88999999999999888762 12346778888888899999999999888876543 2233333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHH
Q 003016 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 318 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~ 397 (857)
..+ ..+...|++++|..+++.+.+....++...+ ..+...+.+.|+.++|...|+...+.+. .+..
T Consensus 182 ~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~------------~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~ 247 (656)
T PRK15174 182 ATC-LSFLNKSRLPEDHDLARALLPFFALERQESA------------GLAVDTLCAVGKYQEAIQTGESALARGL-DGAA 247 (656)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHH------------HHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHH
Confidence 333 3477889999999888888766433333332 4556778888999999999988887653 3466
Q ss_pred HHHHHHHHHHHCCCHHH----HHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQD----AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~----A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+..+...|.+.|++++ |...|++.... .+.+...+..+...+.+.|++++|...++......+.+...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 67778888888888875 78888887762 2334567778888888888888888888888774445567777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh-hhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY-SSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~-~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
..|.+.|++++|.+.|+++.... |+...+ ..+..++...|+.++|...|+...+.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~---------------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREK---------------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC---------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88888888888888888887754 655443 33456677888888888888887763
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=4.4e-13 Score=159.60 Aligned_cols=364 Identities=14% Similarity=0.087 Sum_probs=237.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
..-++..+.+.|+++.|..+++..+...+. +...+..+...+...|+++.|...|+++... -+.+...|..+..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~----~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~ 118 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN----GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC----chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 344566677778888888888777664322 3444555556666688888888888888763 1234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
.+.+.|++++|...|++.... -+.+...|..+...+...|++++|...++.+......+... +
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l----------------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~ 181 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA----------------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-I 181 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-H
Confidence 788888888888888887763 23356667777777888888888888887776553322221 1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH
Q 003016 353 GLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432 (857)
Q Consensus 353 ~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 432 (857)
..+ ..+...|++++|..+++.+......++...+..+...+.+.|++++|+..|++... . .+.+.
T Consensus 182 ------------~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~-~-~p~~~ 246 (656)
T PRK15174 182 ------------ATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA-R-GLDGA 246 (656)
T ss_pred ------------HHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh-c-CCCCH
Confidence 222 23667788888888888776665444444455556677788888888888888776 2 23345
Q ss_pred HHHHHHHHHHHcCCCHHH----HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDD----CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~----A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
..+..+-..+...|++++ |...|+......+.+...+..+...+.+.|++++|...+++.....
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------------ 314 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH------------ 314 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------
Confidence 566677777788888775 6777777776545567778888888888888888888888877644
Q ss_pred CCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 003016 509 PLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF 586 (857)
Q Consensus 509 ~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~ 586 (857)
|+ ...+..+..++...|++++|...|+.+... .|+.. .+..+..++...|+.++|...|+...+..-.--...
T Consensus 315 ---P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~ 389 (656)
T PRK15174 315 ---PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQS 389 (656)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhh
Confidence 54 345556667777788888888888877764 45443 233345567778888888888887765421111233
Q ss_pred HHHHHHHHH----HcCCHHHHHHHHHHhh
Q 003016 587 FTEMLIQAI----VQSNYEKAVALINAMA 611 (857)
Q Consensus 587 ~~~li~~~~----~~g~~~~A~~l~~~M~ 611 (857)
|...+..|. ..+...+......++.
T Consensus 390 ~~ea~~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 390 FEEGLLALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHHHHHHhcCCccchhhHHHHHh
Confidence 333333333 3355555445555543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=4.7e-14 Score=152.79 Aligned_cols=384 Identities=14% Similarity=0.104 Sum_probs=309.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~ 268 (857)
-..+|..+...+-..|+++.|+.++..+++..++ .+..|..+..+|...|+.+.|...|....+ +.|+.+...
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~----fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~ 187 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPK----FIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCAR 187 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhh
Confidence 4458888999999999999999999999875332 677899999999999999999999988876 457766655
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 269 SVAV-TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 269 ~li~-~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
+-+. .+-..|++++|...|.+..... +-=.+.|+.|-..+-.+|++..|++-|++.++. .|
T Consensus 188 s~lgnLlka~Grl~ea~~cYlkAi~~q----------------p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP 249 (966)
T KOG4626|consen 188 SDLGNLLKAEGRLEEAKACYLKAIETQ----------------PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DP 249 (966)
T ss_pred cchhHHHHhhcccchhHHHHHHHHhhC----------------CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CC
Confidence 5444 3445789999999998887642 223677999998999999999999999998864 45
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT-ASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~ 426 (857)
+-..- |-.|-+.|...+.++.|...+.+.... .|+ ...+..|...|-..|.++-|+..|++..+
T Consensus 250 ~f~dA-----------YiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~-- 314 (966)
T KOG4626|consen 250 NFLDA-----------YINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE-- 314 (966)
T ss_pred cchHH-----------HhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--
Confidence 53321 367888999999999999999887643 332 44577788889999999999999999876
Q ss_pred CCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 003016 427 HSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 505 (857)
Q Consensus 427 g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~ 505 (857)
+.|+ ...|+.|..++-..|++.+|.+.+.....-++....+.+.|-..|...|.+++|..+|....+
T Consensus 315 -~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~----------- 382 (966)
T KOG4626|consen 315 -LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE----------- 382 (966)
T ss_pred -cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh-----------
Confidence 3455 467999999999999999999999999886666788899999999999999999999999887
Q ss_pred CCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003016 506 DGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583 (857)
Q Consensus 506 ~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~ 583 (857)
+.|.- ..++.|...|-..|++++|...|++.++ +.|+-. .|+.+-..|-..|+++.|.+.+..... +.|.
T Consensus 383 ----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt 454 (966)
T KOG4626|consen 383 ----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPT 454 (966)
T ss_pred ----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcH
Confidence 44754 5688899999999999999999999886 888854 888899999999999999999988776 4454
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHh---hhccC
Q 003016 584 -PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESN---EDRIS 634 (857)
Q Consensus 584 -~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~---~~~g~ 634 (857)
...++.|-..|-.+|+..+|+.-+++.+ .++||. ..+..++.+. +.|.|
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHHHHhcccc
Confidence 4577888889999999999999999965 556665 3555555443 44544
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=1.3e-12 Score=155.77 Aligned_cols=414 Identities=11% Similarity=-0.026 Sum_probs=241.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~ 239 (857)
..-..+-+.|.+++|+..|.+.... .|+...|..+..+|...|+++.|+..+..+++.. +.+..+|..+-.+|.
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~----p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD----PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHH
Confidence 3345566789999999999998764 5788889999999999999999999999998753 236788999999999
Q ss_pred HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC-ChhhhhhhhhcCCCC---------
Q 003016 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP-SKRIKNMHRKNWDPV--------- 309 (857)
Q Consensus 240 k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~~l~~m~~k~f~~~--------- 309 (857)
..|++++|+.-|.......+. +......++..+........+...+..-.... ....+.-|...|...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF--RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 999999999988777653221 11111222221111111112222211100000 000000010000000
Q ss_pred --CCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHH
Q 003016 310 --LEPDL-VVYNAVLNA---CVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVA 382 (857)
Q Consensus 310 --~~pd~-~t~~~li~~---~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~ 382 (857)
..++. ..+..+... ....+++++|.+.|+...+.+ ..|+.... |+.+...|...|++++|..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a-----------~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA-----------LNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH-----------HHHHHHHHHHcCCHHHHHH
Confidence 00000 000000000 112356677777777776654 23333221 3566666677777777777
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 383 lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
.|++..+.+.. ....|..+...+...|++++|...|++.... .+.+..++..+...+...|++++|...|+...+..
T Consensus 353 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 353 DLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77776654321 2345666667777777777777777776652 22334566666667777777777777777776644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
+.+...|..+...+.+.|++++|+..|++..... | +...|+.+...+...|++++|...|+...
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF---------------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556666667777777777777777777766533 4 34566666667777777777777777766
Q ss_pred HcCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 542 LSGCQLDQT------KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 542 ~~g~~pd~~------t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
...-..+.. .++.....+...|++++|..+++...... +.+...+..+...+.+.|++++|+.+|++..
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 532111110 11111122333577777777777665542 1233456666777777777777777777654
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.69 E-value=2.3e-13 Score=147.44 Aligned_cols=449 Identities=14% Similarity=0.091 Sum_probs=345.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
..|-.+.-+.|++.+|.+.-...-+.. ..+......+-..+.+..+.+...+--...++. ...-..+|+.+.+.+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~----~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK----NPQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc----cchHHHHHHHHHHHH
Confidence 445566778899999887655443333 222223333333455555555444433333332 222457899999999
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
-..|++++|+..++.|.+. .| .+..|..+..++...|+.+.|.+.|.+..+ +.|+....
T Consensus 127 kerg~~~~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alq-----------------lnP~l~ca 186 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----------------LNPDLYCA 186 (966)
T ss_pred HHhchHHHHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----------------cCcchhhh
Confidence 9999999999999999883 45 478999999999999999999999999887 56877766
Q ss_pred HHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH
Q 003016 318 NAVLNAC-VPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396 (857)
Q Consensus 318 ~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~ 396 (857)
.+-+..+ -..|.+.+|..-+.+.++. .|.- .+.|+.|-..+-..|++..|..-|++....+... .
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~f-----------AiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f-~ 252 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIET--QPCF-----------AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-L 252 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhh--CCce-----------eeeehhcchHHhhcchHHHHHHHHHHhhcCCCcc-h
Confidence 5544443 4478999999988888765 3432 3458999999999999999999999987765321 2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
..|-.|-..|...+.+++|+.-|.+... ..|+ ...+..+-..|-..|.++.|+..+++..+.-+.-...||.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHH
Confidence 3577889999999999999999988764 4565 45677777788899999999999999887444447899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHA 553 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~ 553 (857)
+-..|++.+|.+.+.+..... |+. .+.+.|-..+...|.++.|..+|..... +.|.- ..++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~---------------p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~n 392 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLC---------------PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHN 392 (966)
T ss_pred HHhccchHHHHHHHHHHHHhC---------------CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhh
Confidence 999999999999999998854 644 5788899999999999999999998876 56664 4889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhh
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNED 631 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~~~ 631 (857)
.|...|-..|++++|...+++... +.|+ ...|+.|-..|-..|+...|++.+.+.. .+.|.. ...+.|-+.+..
T Consensus 393 NLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI--~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 393 NLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI--QINPTFAEAHSNLASIYKD 468 (966)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH--hcCcHHHHHHhhHHHHhhc
Confidence 999999999999999999998876 6776 4588888889999999999999999876 466766 578999999999
Q ss_pred ccCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHHHhccCc
Q 003016 632 RISRDKLEKLLNALCNCNAASSEITV-SNLSRALHALCRSEK 672 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~~~g~~p~~~~~-~~~~~~l~~~~~~~~ 672 (857)
.|++.+|.+-.+...+. .|+.|.. .++...+.-.|....
T Consensus 469 sGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred cCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999998888755 4444432 234444444455444
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.67 E-value=6e-12 Score=150.08 Aligned_cols=409 Identities=11% Similarity=0.018 Sum_probs=291.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSV 270 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~l 270 (857)
.+...-..+.+.|+++.|...|+..++ ..|+...|..+..+|.+.|++++|+..++...+. .| +...|..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~ 200 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRR 200 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHH
Confidence 345566678888999999999998863 4467788999999999999999999999998873 34 56789999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG--LKPS 348 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd 348 (857)
..+|...|++++|+.-|......+ ..+......++..+.. ..+........+.. ..|.
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~ 260 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIID----------------GFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPS 260 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC----------------CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCC
Confidence 999999999999999887765543 1122222222222221 12222222222221 1122
Q ss_pred HHHHHHHHHHHH---------------HhHHHHHHHHH------HHcCCHHHHHHHHHHHhhcC-CCC-CHHHHHHHHHH
Q 003016 349 AATYGLAMESYR---------------RCLLKVLVRAF------WEEGKINEAVAAVRNMEQRG-VVG-TASVYYELACC 405 (857)
Q Consensus 349 ~~t~~~ll~~~~---------------~~~~~~Li~~y------~k~g~~~~A~~lf~~m~~~~-~~~-d~~t~~~lI~~ 405 (857)
.......+..+. ......++..+ ...+++++|.+.|+...+.+ ..| ....|+.+...
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~ 340 (615)
T TIGR00990 261 VTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340 (615)
T ss_pred HHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence 111111111100 00000111111 22468999999999988765 223 44568888888
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK 484 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~ 484 (857)
+...|++++|+..|++... ..|+ ..+|..+...+...|++++|...|+...+..+.+...|..+...|...|++++
T Consensus 341 ~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 341 KCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999876 2354 55788888889999999999999999987555678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003016 485 AKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG 563 (857)
Q Consensus 485 A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G 563 (857)
|...|++..... |+ ...|..+...+...|++++|+..|++.++. .+-+...++.+...+...|
T Consensus 418 A~~~~~kal~l~---------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 418 AGKDYQKSIDLD---------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred HHHHHHHHHHcC---------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcc
Confidence 999999998854 64 566777788888999999999999998863 2334678888889999999
Q ss_pred CHHHHHHHHHHHHHCCCC--C---CHH-HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhhccCHH
Q 003016 564 KCHLLEHAFDSLLEAGEI--P---HPL-FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNEDRISRD 636 (857)
Q Consensus 564 ~~~~A~~~~~~m~~~gi~--p---~~~-~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~~~~g~~e 636 (857)
++++|...|+...+..-. + +.. .++.....+...|++++|..++++.... .|+. ..+..+...+...|+.+
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~ 559 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVD 559 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHH
Confidence 999999999998765211 1 111 1222222333469999999999997643 3444 46888888999999999
Q ss_pred HHHHHHHHHHhCC
Q 003016 637 KLEKLLNALCNCN 649 (857)
Q Consensus 637 ~~~~l~~~m~~~g 649 (857)
+|.+.++...+..
T Consensus 560 eAi~~~e~A~~l~ 572 (615)
T TIGR00990 560 EALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=4e-12 Score=154.58 Aligned_cols=415 Identities=11% Similarity=0.042 Sum_probs=218.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+.....-.+......|+.++|.+++..+... ...+...+..+...+.+.|++++|..+|++..+. -+.+...+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~----~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~ 86 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH----MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQ 86 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 34444455555555566666666666555321 1123445566666666666666666666665442 12234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
..+...+...|++++|+..+++..+.. +.+.. |..+..++...|+.++|...++++.+. .|
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~----------------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P 147 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA----------------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--AP 147 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CC
Confidence 555556666666666666666655431 22333 555555555666666666666666554 23
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH------HHHHHHHHHH-----HHCCCH---H
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA------SVYYELACCL-----CNNGRW---Q 413 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~------~t~~~lI~~~-----~~~g~~---~ 413 (857)
+.... +..+...+...|..+.|.+.++.... .|+. .....++..+ ...+++ +
T Consensus 148 ~~~~~-----------~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad 213 (765)
T PRK10049 148 QTQQY-----------PTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIAD 213 (765)
T ss_pred CCHHH-----------HHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHH
Confidence 32221 13344455555666666665554432 1110 0011111111 111223 5
Q ss_pred HHHHHHHHHHhcCCCCCcHH-HH----HHHHHHHHcCCCHHHHHHHHHHHhhCC--CCC-HHHHHHHHHHHHhcCCHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEI-TF----TGLIISSMDGGHIDDCISIFQHMKDHC--EPN-IGTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~-t~----~~ll~a~~~~g~~~~A~~if~~m~~~~--~p~-~~~~~~li~~~~~~g~~~~A 485 (857)
+|+..++.+.......|+.. .+ ...+.++...|+.++|...|+.+.+.- .|+ ...+ +...|...|++++|
T Consensus 214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A 291 (765)
T PRK10049 214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHH
Confidence 56666666654212222211 11 111223345566777777777666521 122 2222 35566667777777
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCC--CCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCCH---
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLK--PDEYTYSSMLEASATAHQWEYFEYVYKGMALSG-----------CQLDQ--- 549 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~--pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g-----------~~pd~--- 549 (857)
+.+|+++..... .. .....+..+..++...|++++|..+++.+.... -.|+.
T Consensus 292 ~~~l~~~l~~~p------------~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 292 QSILTELFYHPE------------TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHHHHhhcCC------------CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 777776654320 00 012234445555666677777777766666431 11231
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHH
Q 003016 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFES 628 (857)
Q Consensus 550 ~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a 628 (857)
..+..+...+...|+.++|+++++.+... .+-+...+..+...+...|++++|++.+++... ..|+. ..+......
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHH
Confidence 23344555567777888888887777654 223456777777777777888888888777653 34553 344444445
Q ss_pred hhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 629 NEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 629 ~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
....++++.|..+++.+.+. .|+.+.+..+
T Consensus 437 al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~ 466 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAR--EPQDPGVQRL 466 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 66677777788777777764 4555655555
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1e-11 Score=151.10 Aligned_cols=420 Identities=11% Similarity=0.046 Sum_probs=301.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
.-.+......|..++|+.++....... ..+...+..+..++...|++++|..+++..++.. +.+...+..+...+
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~l 93 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE----PQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 333455778899999999999988633 4556678999999999999999999999987642 33677788999999
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~ 318 (857)
...|++++|+..+++..+. .+.+.. |..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----------------P~~~~~~~ 154 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----------------PQTQQYPT 154 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHHHHH
Confidence 9999999999999999874 233455 8889999999999999999999998853 33566667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHH-----HHcCCH---HHHHHHHHHHhhc
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAF-----WEEGKI---NEAVAAVRNMEQR 390 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y-----~k~g~~---~~A~~lf~~m~~~ 390 (857)
.+..++...+..+.|+..++.... .|+.... +... ....++..+ ...+++ ++|+..++.+.+.
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~---l~~~---~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRD---LEAD---AAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHH---HHHH---HHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 777888889999999988876653 3432110 0000 002222222 222334 7788889888754
Q ss_pred -CCCCCHH-HH----HHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 003016 391 -GVVGTAS-VY----YELACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE 463 (857)
Q Consensus 391 -~~~~d~~-t~----~~lI~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~ 463 (857)
...|+.. .+ ...+..+...|++++|+..|+.+.. .+. .|+. .-..+..+|...|++++|..+|+.+...-+
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p 303 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPE 303 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCC
Confidence 2222221 11 1113455677999999999999988 442 2433 222246789999999999999999876321
Q ss_pred C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH---hHhhhhHHHHHhcCCHHHHHHH
Q 003016 464 P----NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE---YTYSSMLEASATAHQWEYFEYV 536 (857)
Q Consensus 464 p----~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~---~t~~~ll~a~~~~g~~~~a~~l 536 (857)
. ....+..+..++.+.|++++|.++++.+....+..... . +...-.|+. ..+..+...+...|+.++|+.+
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~-~-~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL-Y-GSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee-c-CCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 24556777778899999999999999998754110000 0 000123442 2345566778888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 003016 537 YKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPF 615 (857)
Q Consensus 537 ~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~ 615 (857)
++++... .+-+...+..+...+...|+.++|++.++...+. .|+ ...+..+...+...|++++|+.+++++.. .
T Consensus 382 l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~ 456 (765)
T PRK10049 382 ARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--R 456 (765)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 9999874 2445668888888899999999999999998874 354 56777777788889999999999999874 3
Q ss_pred ccCHH
Q 003016 616 HITER 620 (857)
Q Consensus 616 ~p~~~ 620 (857)
.|+..
T Consensus 457 ~Pd~~ 461 (765)
T PRK10049 457 EPQDP 461 (765)
T ss_pred CCCCH
Confidence 44443
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.62 E-value=1.1e-10 Score=142.67 Aligned_cols=456 Identities=7% Similarity=-0.045 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 003016 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (857)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L 234 (857)
......+...+.+.|.+++|...+++..+.. |+...|..++..+ ++..+|..+++.+++..+. +..++..+
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~----n~~~~~~l 148 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTVEELLAQQKA----CDAVPTLR 148 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC----ChhHHHHH
Confidence 4455778888999999999999999988764 6666665555444 8888999999999875332 45566555
Q ss_pred HHH--------HHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHcCCChh------hh
Q 003016 235 LAI--------LGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-AVTLGQVGLLKELVKLIERMRQKPSKR------IK 299 (857)
Q Consensus 235 i~~--------y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~~------l~ 299 (857)
... |.+.+....|++ .+.. ...|+..+.... ...|.+.|++++|+.++.++.+.+... +-
T Consensus 149 a~~~~~~~~l~y~q~eqAl~AL~--lr~~---~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~ 223 (987)
T PRK09782 149 CRSEVGQNALRLAQLPVARAQLN--DATF---AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWF 223 (987)
T ss_pred HHHhhccchhhhhhHHHHHHHHH--Hhhh---CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 555 777755555555 2221 223445544444 889999999999999999998886221 22
Q ss_pred hhhhh---------cCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH---------
Q 003016 300 NMHRK---------NWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-PSAATYGLAMESYR--------- 360 (857)
Q Consensus 300 ~m~~k---------~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~~~~--------- 360 (857)
+.|.. ++.+.++-|...+..+...+.+.|+.++|.++++++...-.. |+..++.-.+.-..
T Consensus 224 ~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 224 DVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred HHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 22322 244455678899999999999999999999999998654322 33333221111111
Q ss_pred ----------------------------------------------------------HhHH--------------HHHH
Q 003016 361 ----------------------------------------------------------RCLL--------------KVLV 368 (857)
Q Consensus 361 ----------------------------------------------------------~~~~--------------~~Li 368 (857)
...| --+-
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0000 0000
Q ss_pred HHHHHcCCHHHHHHHHHHHhh--cCCC-----------------------------------------------------
Q 003016 369 RAFWEEGKINEAVAAVRNMEQ--RGVV----------------------------------------------------- 393 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~--~~~~----------------------------------------------------- 393 (857)
-...+.|+..+|..+|+..-. .+..
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 111233444444444443322 0111
Q ss_pred ---------C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 394 ---------G--TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 394 ---------~--d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
+ +...|..+..++.. ++.++|+..|.+... ..|+......+..++...|++++|...|+.+...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 1 33344444444444 556666665555443 1244433333344445677777777777766543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.|+...+..+...+.+.|++++|...|++..... |+.. .+..+...+...|++++|...+++..
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---------------P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---------------LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444445566666777777777777777776543 4332 22222333444577788877777777
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccC-HH
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHIT-ER 620 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~-~~ 620 (857)
+ +.|+...+..+...+.+.|+.++|...|+...... +-+...++.+-..+...|++++|+..+++... ..|+ ..
T Consensus 604 ~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~ 678 (987)
T PRK09782 604 N--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPA 678 (987)
T ss_pred H--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 5 44666677777777777888888888887776642 22445666666677777888888887777653 2333 35
Q ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 621 QWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 621 ~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
.+..+-.++...|+.+.|...++...+..
T Consensus 679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 679 LIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66667777777788888877777777543
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.57 E-value=7.9e-10 Score=132.51 Aligned_cols=446 Identities=10% Similarity=0.023 Sum_probs=318.4
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
...+.|.+..|+..|++..+.. |+.. ....++..+...|+.++|+..++..+. .........-++...|...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcC
Confidence 4568999999999999998765 5542 333888888899999999999998862 11223444445566888999
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
+++.|.++|+++.+. -+-+...+..++..+...++.++|++.+..+... .|+...+-.++.
T Consensus 117 dyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----------------dp~~~~~l~lay 177 (822)
T PRK14574 117 RWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER-----------------DPTVQNYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----------------CcchHHHHHHHH
Confidence 999999999999984 2334677778889999999999999999999764 566666644444
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH--H
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY--Y 400 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~--~ 400 (857)
.+...++..+|++.++++.+. .|+...+ +..++....+.|-...|.++..+-+.. ..+...-| .
T Consensus 178 L~~~~~~~~~AL~~~ekll~~--~P~n~e~-----------~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~ 243 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRL--APTSEEV-----------LKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLER 243 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHH
Confidence 444566676699999999987 4654443 367788888999998888877764421 11111001 0
Q ss_pred HHHHHHHH---------CCC---HHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHcCCCHHHHHHHHHHHhh-CC
Q 003016 401 ELACCLCN---------NGR---WQDAMLVVEKIKSLRHSKPLEI-----TFTGLIISSMDGGHIDDCISIFQHMKD-HC 462 (857)
Q Consensus 401 ~lI~~~~~---------~g~---~~~A~~l~~~m~~~~g~~pd~~-----t~~~ll~a~~~~g~~~~A~~if~~m~~-~~ 462 (857)
..+.-..+ ..+ .+.|+.-++.+....+..|... ...-.+-++...|+..++.+.|+.+.. +.
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 00111111 122 4556666666665334334322 223445677889999999999999997 43
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+.-..+--++.++|...+++++|..++.+........ ....++......|.-++...+++++|..+++.+.+
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~--------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT--------FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc--------cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 3344577889999999999999999999986543000 00122444457889999999999999999999987
Q ss_pred cCC-----------CCCH--H-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 543 SGC-----------QLDQ--T-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 543 ~g~-----------~pd~--~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
.-- .||. . .+..++..+.-.|++.+|++.++.+... -+-|......+-+.+...|++.+|+..++
T Consensus 396 ~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 311 2332 2 3444566688999999999999999764 23478888999999999999999999997
Q ss_pred HhhhCCCccCH-HHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 003016 609 AMAYAPFHITE-RQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLS 661 (857)
Q Consensus 609 ~M~~~~~~p~~-~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~ 661 (857)
.... ..|+. .+......+....+++..+..+++.+.+. .|.++....+.
T Consensus 475 ~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~~~~l~ 524 (822)
T PRK14574 475 AVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIPSQELD 524 (822)
T ss_pred HHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchhHHHHH
Confidence 7653 35654 45666777778889999999999999866 45666666553
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=3.3e-12 Score=144.06 Aligned_cols=439 Identities=13% Similarity=0.062 Sum_probs=265.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003016 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (857)
Q Consensus 175 ~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 254 (857)
..++..|...|+.||.+||.++|..||..|+++.|- +|..|.-. ..+.+..+++.++.+..+.++.+.|.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k---sLpv~e~vf~~lv~sh~~And~Enpk------ 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK---SLPVREGVFRGLVASHKEANDAENPK------ 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc---cccccchhHHHHHhcccccccccCCC------
Confidence 467889999999999999999999999999999988 88887432 12225566777777777666666555
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHc----CC---------------------------------
Q 003016 255 LEDCNLYPDIAAYHSVAVTLGQVGLLKE---LVKLIERMRQ----KP--------------------------------- 294 (857)
Q Consensus 255 ~~~~gi~pd~~t~~~li~~~~~~g~~~~---A~~l~~~m~~----~g--------------------------------- 294 (857)
.|-..||+.|+.+|.+.|++.. ..+.+..... .|
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg 153 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG 153 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH
Confidence 2666677777777777776543 1111111111 11
Q ss_pred ----------------------------------ChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 295 ----------------------------------SKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 295 ----------------------------------~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
-..+.+|+++..+ .|+..+|.+++.+-..+|+.+.|..++.+|
T Consensus 154 lwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 154 LWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 0013344444443 578888888888888889999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHH---
Q 003016 341 RKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML--- 417 (857)
Q Consensus 341 ~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~--- 417 (857)
++.|+..+..-| |-.|+ + .++...+..+...|.+.|+.|+..|+...+..+..+|....+..
T Consensus 231 ke~gfpir~HyF-----------wpLl~-g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq 295 (1088)
T KOG4318|consen 231 KEKGFPIRAHYF-----------WPLLL-G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQ 295 (1088)
T ss_pred HHcCCCcccccc-----------hhhhh-c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccc
Confidence 888888777766 33333 3 78888888888888888988888888877776666554222211
Q ss_pred --------HHHHHHhc------------------------CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CC
Q 003016 418 --------VVEKIKSL------------------------RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---HC 462 (857)
Q Consensus 418 --------l~~~m~~~------------------------~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~ 462 (857)
++..|... .|+.... +.-+++.-..+.|.-++..++-..|.. ..
T Consensus 296 ~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~-aiws~c~~l~hQgk~e~veqlvg~l~npt~r~ 374 (1088)
T KOG4318|consen 296 LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILE-AIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRD 374 (1088)
T ss_pred hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccch-HHHHHHHHHHHcCCCchHHHHHhhhcCCcccc
Confidence 11111110 0000000 001111111224555555555555544 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHcC------------------CCCccccCC-----CCCCCCC----
Q 003016 463 -EPNIGTVNAMLKVYSRNDMFSKAKELFE--ETTRAN------------------SSGYTFLSG-----DGAPLKP---- 512 (857)
Q Consensus 463 -~p~~~~~~~li~~~~~~g~~~~A~~lf~--~M~~~g------------------~~~~~~~~~-----~~~~~~p---- 512 (857)
..++..|..++.-|.+.-+..-...++. +....+ .+....+.+ ......|
T Consensus 375 s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 375 SGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred CcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 1234445555555543211111111110 000000 000000000 0000111
Q ss_pred ---CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHH
Q 003016 513 ---DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPHPLFF 587 (857)
Q Consensus 513 ---d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~--gi~p~~~~~ 587 (857)
=...-+.++..|++.-+..+++..-+.....-+ ...|..||+-+.+..+.++|..+.+++... .+..|..-+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 011234455556665555555544333322111 156888999999999999999999988765 455677788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCC-CccC-HHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAP-FHIT-ERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~-~~p~-~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..+.+.+.+.+...++..++.+|...- ..|+ ..++-.+++.....|..+...++.+.+...|+.
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999987632 3333 356677888888999999999999999988877
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=6.2e-11 Score=124.01 Aligned_cols=245 Identities=13% Similarity=0.188 Sum_probs=201.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
+++..++.+|++--..++|.+++++-.....+.+..+||.+|.+-.- ..+..+..+|+..+. .||.+++|+++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm---~Pnl~TfNalL 280 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKM---TPNLFTFNALL 280 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhc---CCchHhHHHHH
Confidence 56778888888888889999999999999889999999999988654 344889999988744 48999999999
Q ss_pred HHHHHcCChhHH----HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 236 AILGKAGRPHEA----LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE-LVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 236 ~~y~k~g~~~~A----~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
+..++.|+++.| .+++.+|++ .|+.|...+|..+|..+++.++..+ |..++.++.. ++-.|-|.+..
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N-------~ltGK~fkp~~ 352 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN-------SLTGKTFKPIT 352 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH-------hhccCcccCCC
Confidence 999999988765 567788888 6999999999999999999988744 5555555542 33457777777
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHH--HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG----LKPSAA--TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~pd~~--t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
+.|...|.+.++.|.+..+.+.|.++..-+.... +.|+.. .| |..+....|+....+.-...|
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fY-----------yr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFY-----------YRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999987765321 334322 23 477888888999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRH 427 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g 427 (857)
+.|.-+-..|+..+...++.+..-.|+++-.-+++.+|.. .|
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 9999888888888888899999999999988888888877 44
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=8.1e-10 Score=135.08 Aligned_cols=208 Identities=12% Similarity=0.045 Sum_probs=133.4
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
...|++++|+..|+...+.. +-+..++..+...|...|+.++|+...+..++.. +.|...+..| ..+ ++.+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld----P~n~~~~~~L-a~i---~~~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH----PGDARLERSL-AAI---PVEV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----cccHHHHHHH-HHh---ccCh
Confidence 34699999999999998875 2346688889999999999999999999998742 2366666655 222 9999
Q ss_pred HHHHHHHHhHHcCCCCCC-HHHHHHHHHH--------HHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH
Q 003016 246 EALRIFNLMLEDCNLYPD-IAAYHSVAVT--------LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd-~~t~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t 316 (857)
+|..+++++... .|+ ...+..+... |.+.+...++++ ..... ..|+..+
T Consensus 126 kA~~~ye~l~~~---~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~---------------~~~~~~v 183 (987)
T PRK09782 126 KSVTTVEELLAQ---QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFA---------------ASPEGKT 183 (987)
T ss_pred hHHHHHHHHHHh---CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhC---------------CCCCcHH
Confidence 999999999985 344 4444444444 666644444444 33222 4445554
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH-cCCHHHHHHHHHHHhhcCCCC
Q 003016 317 YNAV-LNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE-EGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 317 ~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k-~g~~~~A~~lf~~m~~~~~~~ 394 (857)
.... ...|.+.|++++|+.++..+.+.+....... ..|-.+|.. .++ +++..+++. .+.-
T Consensus 184 L~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~-------------~~L~~ay~q~l~~-~~a~al~~~----~lk~ 245 (987)
T PRK09782 184 LRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAER-------------RQWFDVLLAGQLD-DRLLALQSQ----GIFT 245 (987)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHH-------------HHHHHHHHHhhCH-HHHHHHhch----hccc
Confidence 4444 8899999999999999999999875443321 233334444 233 444444332 1113
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
+...+..+...|.+.|+.++|..++.++
T Consensus 246 d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 246 DPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444555555555555555555554444
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1e-09 Score=125.96 Aligned_cols=454 Identities=11% Similarity=0.091 Sum_probs=310.0
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLM--FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~--p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 229 (857)
..++...+.|-..+-..+.+..++.+...+...... .-...|-.+-++|-..|+++.|...|-...+..... -+.
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~---~~l 343 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN---FVL 343 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC---ccc
Confidence 344555566666666677777777777777654311 222346667777777788888887777665432221 133
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG----LLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+--|..+|.+.|+++.|...|+..... .+-+..|.-.|...|+..+ ..+.|..++......
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~------------ 409 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ------------ 409 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc------------
Confidence 4455677777888888888888777763 2233556666666666654 345555565555443
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR----KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~ 381 (857)
.+.|...|-.+-..+-+..-+ .++.+|.... ..+-.+..... |.+...+...|++..|.
T Consensus 410 ----~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~L------------NNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 410 ----TPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVL------------NNVASLHFRLGNIEKAL 472 (1018)
T ss_pred ----ccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHH------------HhHHHHHHHhcChHHHH
Confidence 345666776665555544333 3355554433 33433444444 89999999999999999
Q ss_pred HHHHHHhhc---CCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHcCCCHHHH
Q 003016 382 AAVRNMEQR---GVVGTA------SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI-TFTGLIISSMDGGHIDDC 451 (857)
Q Consensus 382 ~lf~~m~~~---~~~~d~------~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~~~~g~~~~A 451 (857)
..|.....+ ...+|. .+-.-+..++-..++.+.|.+.|..+... .|.-+ .|..+..+.-..+...+|
T Consensus 473 ~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke---hp~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 473 EHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE---HPGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---CchhHHHHHHhhHHHHhccCcHHH
Confidence 999987655 122222 12223456667778999999999999872 35433 344444444456788899
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhc----
Q 003016 452 ISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA---- 527 (857)
Q Consensus 452 ~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~---- 527 (857)
...+.........+...|+-+-..|.+...+..|.+-|......- ...+|.++..+|-+.|...
T Consensus 550 ~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~------------~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 550 SLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT------------STKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh------------ccCCchhHHHHhhHHHHHHhccc
Confidence 999999988666778888888889999999999999887776543 1347888877777755443
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 528 --------HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 528 --------g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
+..+.|+++|.+.++.. +-|...-|.+-..++..|++++|..+|....+... -...+|-.+-..|...|+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 45788999999888742 44666777787788999999999999999988743 233567788899999999
Q ss_pred HHHHHHHHHHhhh-CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 600 YEKAVALINAMAY-APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 600 ~~~A~~l~~~M~~-~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
+..|+++|+.... ..-+-+..++..|-.+.-..|.+.++.+.+.... ...|.++.+.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~--~~~p~~~~v~ 753 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR--HLAPSNTSVK 753 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCCccchHH
Confidence 9999999999544 3445566788888889999999888887765554 4455566554
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=1.7e-08 Score=121.25 Aligned_cols=419 Identities=9% Similarity=0.041 Sum_probs=294.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILG 239 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~ 239 (857)
.++..+...|..++|+..+++.... -......+..+...+...|+++.|.++++.+++..+ .+..++..++..|.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP----~n~~~l~gLa~~y~ 147 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP----TNPDLISGMIMTQA 147 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHh
Confidence 5556666779999999999988721 123334444456678888999999999999987533 36777888999999
Q ss_pred HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHH
Q 003016 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA 319 (857)
Q Consensus 240 k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~ 319 (857)
..++.++|++.+.++... .|+...+-.++..+...++..+|++.++++.... +-+...+..
T Consensus 148 ~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~----------------P~n~e~~~~ 208 (822)
T PRK14574 148 DAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA----------------PTSEEVLKN 208 (822)
T ss_pred hcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC----------------CCCHHHHHH
Confidence 999999999999999874 4776666444444444666667999999998853 446777788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHH--HhHHHHHHHHHHHcCCH---HHHHHHHHHHhhc-C
Q 003016 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA--MESYR--RCLLKVLVRAFWEEGKI---NEAVAAVRNMEQR-G 391 (857)
Q Consensus 320 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l--l~~~~--~~~~~~Li~~y~k~g~~---~~A~~lf~~m~~~-~ 391 (857)
+..+..+.|-...|.++..+ .|+.++=... |.... ..+-++.+..-....++ +.|+.-++.+... +
T Consensus 209 ~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 209 HLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 88999999999888876654 2322221110 00000 00001111110112233 4455555554432 2
Q ss_pred CCCC-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----
Q 003016 392 VVGT-A----SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH----- 461 (857)
Q Consensus 392 ~~~d-~----~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~----- 461 (857)
..|. . ...--.+-++...|+..+++..|+.|.. .+.+.-..+--++.++|...++.++|..++..+...
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~ 361 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTF 361 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccccc
Confidence 2232 1 2223457788899999999999999998 676655678899999999999999999999998662
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh-hhHHHHHhcCCHHHHHHHHHH
Q 003016 462 -CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS-SMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 462 -~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~-~ll~a~~~~g~~~~a~~l~~~ 539 (857)
..++......|.-+|...+++++|..+++.+....+..+...........||-..+. .++..+.-.|++.+|++.+++
T Consensus 362 ~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~ 441 (822)
T PRK14574 362 RNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLED 441 (822)
T ss_pred CCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 233555568899999999999999999999987432111111222233445555443 445667888999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 540 MALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 540 m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+... -+-|......+-+.+...|...+|+..++..... .| +..+.......+...|++.+|..+.+.+..
T Consensus 442 l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 442 LSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 9764 3557778889999999999999999999776654 45 456667777888888999999999988653
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=1.2e-09 Score=114.75 Aligned_cols=400 Identities=14% Similarity=0.121 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-----
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----- 263 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----- 263 (857)
-..+..|..-|.......+|+..++-+++.+.- |+. ..--.+-+.|.+...+..|++.++....+ .|+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf---~nag~lkmnigni~~kkr~fskaikfyrmaldq---vpsink~~ 274 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMF---PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ---VPSINKDM 274 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhccccc---CCCceeeeeecceeeehhhHHHHHHHHHHHHhh---ccccchhh
Confidence 334445555566666777888888777665322 221 11122344567777788888887766553 232
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 264 -IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 264 -~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...+.+-..+.+.|.++.|...|+.... ..||..+--.|+-++...|+.++..+.|..|..
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~-----------------~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ 337 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCME-----------------EAPNFIAALNLIICAFAIGDAEKMKEAFQKLID 337 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHH-----------------hCccHHhhhhhhhhheecCcHHHHHHHHHHHhc
Confidence 23455555667788888888888888765 357766655555566667888888888888875
Q ss_pred cCCC------------CCHHHHHHHHHH-----HH--------------------------------------HhHHH--
Q 003016 343 SGLK------------PSAATYGLAMES-----YR--------------------------------------RCLLK-- 365 (857)
Q Consensus 343 ~g~~------------pd~~t~~~ll~~-----~~--------------------------------------~~~~~-- 365 (857)
--.. |+....+-.|.. +. ...+.
T Consensus 338 ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 338 IPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred CCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 4322 222222222110 00 01111
Q ss_pred ------HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHH-HHHHH-------------------------------
Q 003016 366 ------VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL-ACCLC------------------------------- 407 (857)
Q Consensus 366 ------~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~l-I~~~~------------------------------- 407 (857)
.-..-|.+.|+++.|.+++.-...++-..-...-|.| .--|.
T Consensus 418 a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkg 497 (840)
T KOG2003|consen 418 AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKG 497 (840)
T ss_pred hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCC
Confidence 1123466778888888777766655432211111111 11111
Q ss_pred ----HCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 408 ----NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 408 ----~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
.+|++++|.+.|++... .........||.=+ .+-..|++++|+..|-.+..-+..+..+...+...|--..+..
T Consensus 498 n~~f~ngd~dka~~~ykeal~-ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALN-NDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHc-CchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHH
Confidence 13455555555555443 11111111122111 2334455555555555544433344445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003016 484 KAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRA 562 (857)
Q Consensus 484 ~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~ 562 (857)
.|++++.+... +.| |....+-|..-|-+.|+-..|.+.+-+--+ -++.|..|...|-.-|...
T Consensus 576 qaie~~~q~~s---------------lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidt 639 (840)
T KOG2003|consen 576 QAIELLMQANS---------------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDT 639 (840)
T ss_pred HHHHHHHHhcc---------------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhh
Confidence 55555544332 333 334444444555555555555554433222 1233444555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc
Q 003016 563 GKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV-QSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI 633 (857)
Q Consensus 563 G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~-~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g 633 (857)
.-++.+..+|+...- +.|+..-|..||..|.+ .|++.+|+++++.... .+.-|...+.-|++-|+..|
T Consensus 640 qf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 640 QFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 555555555554432 45555556655555544 3566666666555532 23334444555555554444
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.5e-08 Score=116.70 Aligned_cols=437 Identities=12% Similarity=0.054 Sum_probs=305.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG--QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 158 ~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~--t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
+-.+-+.+-..|++++|...|-+-.+.. ++.+ .+..|...+...|+++.+...|+.+.+..+ .+..+.-.|-
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p----~~~etm~iLG 383 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP----NNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc----chHHHHHHHH
Confidence 4445566778899999999987766553 5554 455688899999999999999999987532 2556666677
Q ss_pred HHHHHcC----ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCChhhhhhhhhcCC
Q 003016 236 AILGKAG----RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR----QKPSKRIKNMHRKNWD 307 (857)
Q Consensus 236 ~~y~k~g----~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~~l~~m~~k~f~ 307 (857)
..|+..+ ..+.|..+.....+. .+.|...|-.+...+-...-+.. +..|.... ..+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~------------- 447 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKG------------- 447 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcC-------------
Confidence 7777665 557777777777763 34577788777777765544433 66665433 333
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHH-HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKPSAA-TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~-t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
..+-....|.+-..+...|++..|...|...... ...+|.. +.+.-+ --.|...+-..++.+.|.+.
T Consensus 448 --~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~-------~YNlarl~E~l~~~~~A~e~ 518 (1018)
T KOG2002|consen 448 --KQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTL-------KYNLARLLEELHDTEVAEEM 518 (1018)
T ss_pred --CCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHH-------HHHHHHHHHhhhhhhHHHHH
Confidence 4467788999999999999999999999988765 2233332 000000 02344555566789999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 384 VRNMEQRGVVGTASVYYELACCLCNN-------GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 384 f~~m~~~~~~~d~~t~~~lI~~~~~~-------g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
|..+..... ..|.+|.+. +...+|...+.+........|+..+| +-..+.+...+..|..-|.
T Consensus 519 Yk~Ilkehp--------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 519 YKSILKEHP--------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred HHHHHHHCc--------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHHHHHhhhhhcccccHHH
Confidence 999887632 235555554 56778888998887744555555544 4445667777777777666
Q ss_pred HHhhC--CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHH
Q 003016 457 HMKDH--CEPNIGTVNAMLKVYSR------------NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 522 (857)
Q Consensus 457 ~m~~~--~~p~~~~~~~li~~~~~------------~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~ 522 (857)
.+.+. ..+|..+.-+|-..|.+ .+..++|+++|.+..+.. ..|.+.-|.+--
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--------------pkN~yAANGIgi 654 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--------------PKNMYAANGIGI 654 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--------------cchhhhccchhh
Confidence 66552 23566666555554432 346788999999988754 237788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHH
Q 003016 523 ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQSNYE 601 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g~~~ 601 (857)
.++..|++..|..+|.+..+... -+..+|..+...|..+|++-.|.++|+..... .-.-+..+..+|-.++.+.|.+.
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 89999999999999999998653 23446777888899999999999999987665 55567888999999999999999
Q ss_pred HHHHHHHHhhh-CCCccCHHHHHHHHHHh------------------hhccCHHHHHHHHHHHHhCCCC
Q 003016 602 KAVALINAMAY-APFHITERQWTELFESN------------------EDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 602 ~A~~l~~~M~~-~~~~p~~~~~~~Ll~a~------------------~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
+|.+.+..... .+..|. +.|+..+... ..-+..+.+.+++..|...+-.
T Consensus 734 eak~~ll~a~~~~p~~~~-v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 734 EAKEALLKARHLAPSNTS-VKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHhCCccch-HHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99988776443 333333 3333322211 1224456778888888877655
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.33 E-value=3.5e-07 Score=101.06 Aligned_cols=424 Identities=12% Similarity=0.094 Sum_probs=338.9
Q ss_pred cCCChHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 167 EREMTAKNWKFVR----IMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 167 ~~~~~~~A~~l~~----~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
.+|.++...+++. ++...|+..+...|..=..+|-..|..-.+..+...++..|.... .-..+|+.-...|.+.+
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee-d~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE-DRKSTWLDDAQSCEKRP 530 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc-hhHhHHhhhHHHHHhcc
Confidence 4555655555544 466779999999999999999999999999999888887765422 23578999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
.++-|+.+|....+ -++.+...|......=-..|..++...+|++.... ++...+.|-....
T Consensus 531 ~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~----------------~pkae~lwlM~ak 592 (913)
T KOG0495|consen 531 AIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ----------------CPKAEILWLMYAK 592 (913)
T ss_pred hHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh----------------CCcchhHHHHHHH
Confidence 99999999999887 24456778888888888889999999999999876 4556777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 402 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~l 402 (857)
-+-..|+...|+.++....+.. |+..-. |-+-+..-.....++.|+.+|.+... ..|+..+|.--
T Consensus 593 e~w~agdv~~ar~il~~af~~~--pnseei-----------wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs 657 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN--PNSEEI-----------WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKS 657 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC--CCcHHH-----------HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHH
Confidence 7888999999999999988763 443332 57888888999999999999998765 45777778777
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
+...--.+..++|+.++++..+ . -|+- -.|..+-+.+-+.++++.|...|..-.+.|+-.+..|-.+...=-+.|.
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk--~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALK--S-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHH--h-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 7777778999999999988876 2 3554 4566677778888999999999988777788888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 560 (857)
+-.|..+++...-.+ | |...|-..|..-.+.|+.+.|..+..+..+. ++.+...|.--|....
T Consensus 735 ~~rAR~ildrarlkN---------------Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 735 LVRARSILDRARLKN---------------PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred hhhHHHHHHHHHhcC---------------CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 999999999988766 5 7788999999999999999999998887763 4555667877787777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHhhhccCHHHHH
Q 003016 561 RAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELFESNEDRISRDKLE 639 (857)
Q Consensus 561 ~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll~a~~~~g~~e~~~ 639 (857)
+.++-......++.. .-|+.+.-++-..+....+++.|.+.|.+.. ...||. .+|..++.-...+|.-+.-.
T Consensus 799 ~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav--k~d~d~GD~wa~fykfel~hG~eed~k 871 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV--KKDPDNGDAWAWFYKFELRHGTEEDQK 871 (913)
T ss_pred CcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCccchHHHHHHHHHHHhCCHHHHH
Confidence 777755555444433 2345556666677778899999999999976 344554 69999999999999999999
Q ss_pred HHHHHHHhCCC
Q 003016 640 KLLNALCNCNA 650 (857)
Q Consensus 640 ~l~~~m~~~g~ 650 (857)
++++....+..
T Consensus 872 ev~~~c~~~EP 882 (913)
T KOG0495|consen 872 EVLKKCETAEP 882 (913)
T ss_pred HHHHHHhccCC
Confidence 99988886643
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.27 E-value=1.8e-08 Score=113.30 Aligned_cols=285 Identities=13% Similarity=0.065 Sum_probs=217.6
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|+++.|.+.+....... -.| ...|.....+..+.|+++.|.+.+.++.+. .|+...+.
T Consensus 97 eGd~~~A~k~l~~~~~~~---------------~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~--- 155 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---------------EQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPV--- 155 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---------------cch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHH---
Confidence 699999998877654432 111 223333344457899999999999999864 45543321
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH----
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE---- 432 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---- 432 (857)
.-.....+...|+.+.|...++++.+.+.. +...+..+...|.+.|++++|..++..+.+.....|..
T Consensus 156 -------~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 156 -------EITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 023367889999999999999999887633 45678889999999999999999999999833332332
Q ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 433 --ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 433 --~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
.+|..++.........+...++++.+.+..+.+......+...+...|+.++|.+++++..+..
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-------------- 293 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ-------------- 293 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 2345555555556667788888888877666788999999999999999999999999988744
Q ss_pred CCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003016 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM 590 (857)
Q Consensus 511 ~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~l 590 (857)
||... .++.+....++.+.+....+...+. .+-|...+.++-..|.+.|++++|.+.|+...+. .|+...|..+
T Consensus 294 -~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 294 -YDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred -CCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 55522 2334444559999999999988864 2334557778888899999999999999999874 6999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 003016 591 LIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 591 i~~~~~~g~~~~A~~l~~~M 610 (857)
...+.+.|+.++|.+++++-
T Consensus 368 a~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.8e-09 Score=111.16 Aligned_cols=416 Identities=13% Similarity=0.106 Sum_probs=295.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC-CHHHHHHHHHHH
Q 003016 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQML-KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK-SRFVYTKLLAIL 238 (857)
Q Consensus 161 l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~-~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~-~~~~~n~Li~~y 238 (857)
|...|.-++...+|+..|+...+....||...+- .+-..+.+.+.+..|++.+...+..-+..... -..+.|.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3455666778889999999998888888876543 34455667788899999998776553321110 123445555557
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChh---------------------
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKR--------------------- 297 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--------------------- 297 (857)
.+.|++++|+.-|+...+. .||..+--.|+-++..-|+-++..+.|..|...++..
T Consensus 287 iq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 7889999999999987764 4888776666666777899999999999998765211
Q ss_pred ----hhhhh--------------hhcCCCCCCCCHHH---HHH------------------HHHHHHhcCChHHHHHHHH
Q 003016 298 ----IKNMH--------------RKNWDPVLEPDLVV---YNA------------------VLNACVPSHQWKGVFWVFK 338 (857)
Q Consensus 298 ----l~~m~--------------~k~f~~~~~pd~~t---~~~------------------li~~~~~~g~~~~A~~l~~ 338 (857)
|.+|- -|+..+.+.||-.. |.. -...+.++|+++.|.++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 22221 34555555555321 111 1123678899999999999
Q ss_pred HHHHcCCCCCHHHHHH--HHHHHH-------Hh----------HHHHH-----HHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 003016 339 QLRKSGLKPSAATYGL--AMESYR-------RC----------LLKVL-----VRAFWEEGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 339 ~m~~~g~~pd~~t~~~--ll~~~~-------~~----------~~~~L-----i~~y~k~g~~~~A~~lf~~m~~~~~~~ 394 (857)
-+.+..-+.-...-+. +|.-+- .. -||+- -+.-...|+++.|.+.+.+..+.+...
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 8876543222111111 122111 11 11111 111234589999999999999887776
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
....||.=+ .+-..|++++|++.|-.+.. -+.-+..+...+.+.|-...+...|.+++.+...-++.|....+-|.+
T Consensus 524 ~ealfnigl-t~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 524 TEALFNIGL-TAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHhcc-cHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 666666433 35678999999999988764 334566677888888988999999999998887778889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
.|-+.|+-..|.+.+-+--+. +..+..|..-|..-|....-++.+.+.|++..- ++|+..-|-.
T Consensus 601 lydqegdksqafq~~ydsyry--------------fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwql 664 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRY--------------FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQL 664 (840)
T ss_pred Hhhcccchhhhhhhhhhcccc--------------cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHH
Confidence 999999999999887765442 344777777777888888999999999998764 8999999998
Q ss_pred HHHHH-HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 555 LLVEA-SRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 555 Ll~~~-~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
++..| -+.|++..|.++++.+-.. ++-|..+..-|++.+...|.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88776 5889999999999988654 66677888878887766653
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=3e-08 Score=111.48 Aligned_cols=290 Identities=10% Similarity=0.054 Sum_probs=220.4
Q ss_pred cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-HHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHH--HHHHHHHhcCC
Q 003016 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL-LAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH--SVAVTLGQVGL 279 (857)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L-i~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~--~li~~~~~~g~ 279 (857)
.|+++.|.+......+. .++..++-.+ ..+..+.|+++.|...|.++.+. .|+...+. .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~-----~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH-----AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhc-----ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCC
Confidence 59999999888765432 1123333333 33447899999999999999874 46654333 33568889999
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003016 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 359 (857)
++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 169 ~~~Al~~l~~~~~~~----------------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--- 228 (398)
T PRK10747 169 NHAARHGVDKLLEVA----------------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--- 228 (398)
T ss_pred HHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---
Confidence 999999999998763 446778888999999999999999999999998765332 221000
Q ss_pred HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 003016 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 439 (857)
Q Consensus 360 ~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 439 (857)
...|..++.......+.+...++++.+++.- ..+......+...+...|+.++|..++.+..+ . .||.. ..++
T Consensus 229 -~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~--~~~~~--l~~l 301 (398)
T PRK10747 229 -QQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLK-R--QYDER--LVLL 301 (398)
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCHH--HHHH
Confidence 0012344444455566777778888776542 34667788899999999999999999998876 3 34442 1233
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhh
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 519 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ 519 (857)
.+....++.+++....+...+..+-|...+.++-..|.+.+++++|.+.|+...+. .|+..+|..
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---------------~P~~~~~~~ 366 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---------------RPDAYDYAW 366 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------------CCCHHHHHH
Confidence 44446699999999999998877778888999999999999999999999999984 499999999
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH
Q 003016 520 MLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 520 ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+...+...|+.++|.+++++-..
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999987653
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.23 E-value=1.5e-06 Score=100.01 Aligned_cols=431 Identities=10% Similarity=0.042 Sum_probs=238.9
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhH
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHE 246 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~ 246 (857)
-+|+.++|..++.+..+.. +-+...|..|-..|-..|+.+.+...+-.+-.. .+.|...|-.+-....+.|.++.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL----~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL----NPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHhcccHHH
Confidence 4599999999999999876 467779999999999999999998877554332 23377899999999999999999
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHH----HHHH
Q 003016 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN----AVLN 322 (857)
Q Consensus 247 A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~----~li~ 322 (857)
|.-.|.+.... -+++...+--=+..|-+.|+...|...|.++.+.. .+.|..-+- .++.
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---------------p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---------------PPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---------------CchhHHHHHHHHHHHHH
Confidence 99999998873 23444444445677889999999999999998764 211222222 2344
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC---------
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV--------- 392 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~--------- 392 (857)
.+...++-+.|.+.+......+ -..+..++ +.++..|.+...++.|......+..+..
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~------------ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~ 356 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDL------------NILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDT 356 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHH------------HHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhh
Confidence 4555666677777777665522 11122222 5555555555556655555555544111
Q ss_pred ------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHcCCCHHHHH
Q 003016 393 ------------------VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL--EITFTGLIISSMDGGHIDDCI 452 (857)
Q Consensus 393 ------------------~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~ 452 (857)
.++..+.-. .-|+......+....+..-... ..+.|+ .--|.-+..++...|++.+|.
T Consensus 357 ~~~~~~~~~~~~~~~~~~s~~l~v~rl-~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 357 DERRREEPNALCEVGKELSYDLRVIRL-MICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhccccccccccCCCCCCccchhHhH-hhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111 1111121111111112222222 222222 223455555555555555555
Q ss_pred HHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCH
Q 003016 453 SIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQW 530 (857)
Q Consensus 453 ~if~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~ 530 (857)
.+|..+..+ ...+...|--+..+|-..|..++|.+.|+...... |+.. .-.+|-.-+-..|+.
T Consensus 435 ~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~---------------p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 435 RLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA---------------PDNLDARITLASLYQQLGNH 499 (895)
T ss_pred HHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------CCchhhhhhHHHHHHhcCCH
Confidence 555555542 33344555555555555555555555555555422 4322 122223334444555
Q ss_pred HHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------
Q 003016 531 EYFEYVYKGMA--------LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL-------------------------- 576 (857)
Q Consensus 531 ~~a~~l~~~m~--------~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~-------------------------- 576 (857)
++|.+.+..+. ..+..|+........+.|...|+.++=..+-..|.
T Consensus 500 EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~ 579 (895)
T KOG2076|consen 500 EKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTS 579 (895)
T ss_pred HHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccc
Confidence 55555555432 11223333322333333333343333221111111
Q ss_pred -------------------------------------HCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC--
Q 003016 577 -------------------------------------EAGEIPHP--LFFTEMLIQAIVQSNYEKAVALINAMAYAPF-- 615 (857)
Q Consensus 577 -------------------------------------~~gi~p~~--~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~-- 615 (857)
..|+.-+. ..+.-++..+++.+++++|+.+...+.....
T Consensus 580 ~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~ 659 (895)
T KOG2076|consen 580 KRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFF 659 (895)
T ss_pred cccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Confidence 01111111 1234567777888999999999888765432
Q ss_pred ccCH---HHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 616 HITE---RQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 616 ~p~~---~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
.++. ..-...+.++...+++..+...++.|...
T Consensus 660 ~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 660 QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2222 22344556677788888888888888754
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.22 E-value=1.3e-09 Score=123.61 Aligned_cols=272 Identities=15% Similarity=0.167 Sum_probs=168.0
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCC
Q 003016 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (857)
Q Consensus 250 vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~ 329 (857)
++-.|.. .|+.||.+||.++|.-||..|+.+.|- +|.-|+... ...+...|+.++.+..+.++
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks---------------Lpv~e~vf~~lv~sh~~And 74 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS---------------LPVREGVFRGLVASHKEAND 74 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc---------------ccccchhHHHHHhccccccc
Confidence 3445555 488888888888888888888888887 888887766 66777888888888888887
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHC
Q 003016 330 WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN 409 (857)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~ 409 (857)
.+.+. .|...|| ++|..+|...|++.. |+...+ -.-.++..+..+
T Consensus 75 ~Enpk-----------ep~aDty------------t~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~ 119 (1088)
T KOG4318|consen 75 AENPK-----------EPLADTY------------TNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDH 119 (1088)
T ss_pred ccCCC-----------CCchhHH------------HHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhh
Confidence 77665 5666666 788888888888766 332222 123344445555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcC-CHHHHH
Q 003016 410 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRND-MFSKAK 486 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~~~~~~~li~~~~~~g-~~~~A~ 486 (857)
|-......++..+.-..+..||..+.. .-..-.|.++.+.+++..++.. ..|-.+ .+.-+.... .+++-.
T Consensus 120 Gvgs~e~~fl~k~~c~p~~lpda~n~i---lllv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl 192 (1088)
T KOG4318|consen 120 GVGSPERWFLMKIHCCPHSLPDAENAI---LLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLL 192 (1088)
T ss_pred ccCcHHHHHHhhcccCcccchhHHHHH---HHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHH
Confidence 655555555544333244555544322 2222345555566666555441 112221 122222222 222222
Q ss_pred HHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003016 487 ELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCH 566 (857)
Q Consensus 487 ~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~ 566 (857)
.......+ + |+..+|.+++.+-.-+|+.+.|..++.+|.+.|+..+.+-|-.|+.+ .+...
T Consensus 193 ~~cksl~e-~---------------~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q 253 (1088)
T KOG4318|consen 193 NMCKSLVE-A---------------PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQ 253 (1088)
T ss_pred HHHHHhhc-C---------------CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---Cccch
Confidence 22222222 2 77777777777777777777777777777777777777766666655 56666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 567 LLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 567 ~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
-+..+.+.|.+.|+.|+..|+...+..+...|.
T Consensus 254 ~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 254 VFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 677777777777777777777777776666544
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.21 E-value=1.2e-10 Score=124.84 Aligned_cols=160 Identities=12% Similarity=0.027 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
+..++..+.+.++++++..+++..........+...|..+...+.+.|+.++|.+.++...+..+.|....+.++..+..
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID 192 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444333222223333444444444444444444444444444222234444444444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 558 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~ 558 (857)
.|+.+++.+++....... ..|...|..+..+|...|+.++|+..|++..+.. +.|+.+...+.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA--------------PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADA 257 (280)
T ss_dssp TCHHHHHHHHHHHHHHH---------------HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHC--------------cCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccc
Confidence 444444444444433321 1222334444444444444444444444444321 1233344444444
Q ss_pred HHHcCCHHHHHHHHH
Q 003016 559 ASRAGKCHLLEHAFD 573 (857)
Q Consensus 559 ~~~~G~~~~A~~~~~ 573 (857)
+...|+.++|.++.+
T Consensus 258 l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 258 LEQAGRKDEALRLRR 272 (280)
T ss_dssp HT-------------
T ss_pred ccccccccccccccc
Confidence 444444444444443
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.21 E-value=3.2e-07 Score=105.35 Aligned_cols=373 Identities=12% Similarity=0.089 Sum_probs=268.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
.......+...|+.+.|..++.++++..+ .+...|-.|-..|-..|+.+++...+-.... -.+.|..-|-.+-.
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp----~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~lad 215 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDP----RNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLAD 215 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCc----cchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 33333334445999999999999998643 4778899999999999999999988776654 23457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
-..+.|+++.|.-+|.+..+.. +++...+---...|-+.|+...|..-|.+|.+.....|..-+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~----------------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN----------------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC----------------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 9999999999999999998863 556555555667789999999999999999886432222222
Q ss_pred HHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 353 GLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR-GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 353 ~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
-..+ -..+..|...++-+.|.+.++..... +-..+...++.++..|.+..+++.|......+.. ....+|
T Consensus 280 ~d~i--------~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~-r~~e~d 350 (895)
T KOG2076|consen 280 EDLI--------RRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN-RESEKD 350 (895)
T ss_pred HHHH--------HHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc-cccCCC
Confidence 1111 34566777778889999998887652 2233445688899999999999999988888766 222333
Q ss_pred HHHH--------------------------HHHHHHHHcCCCHHHHHHHHHHHhh-C--CCCCHHHHHHHHHHHHhcCCH
Q 003016 432 EITF--------------------------TGLIISSMDGGHIDDCISIFQHMKD-H--CEPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 432 ~~t~--------------------------~~ll~a~~~~g~~~~A~~if~~m~~-~--~~p~~~~~~~li~~~~~~g~~ 482 (857)
..-+ .-+.-++.+....+....+..-... . ..-+...|.-+.++|...|++
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 2221 1122223333333333334443433 2 334567888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHH
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASR 561 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~ 561 (857)
.+|+.+|..+.... .--+...|--+..+|-..|..+.|.+.|...+. ..|+.. .-..|-..+-+
T Consensus 431 ~~Al~~l~~i~~~~-------------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 431 KEALRLLSPITNRE-------------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHHHhcCc-------------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHh
Confidence 99999999998755 333567888899999999999999999999986 456543 44556666889
Q ss_pred cCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 562 AGKCHLLEHAFDSLLE--------AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~--------~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
.|+.++|.+.+..|.. .+..|+...-.-....+...|+.++-++....|.
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999988642 2344555555556677778898888666655554
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=5.9e-08 Score=109.73 Aligned_cols=288 Identities=13% Similarity=0.041 Sum_probs=203.9
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL-VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (857)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (857)
...|+++.|.+.+.+..+. .|+. ..+-....+..+.|+.+.|.+.+....+....++....
T Consensus 95 ~~~g~~~~A~~~l~~~~~~-----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~- 156 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH-----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE- 156 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc-----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH-
Confidence 3579999999999887654 3443 33444456677889999999999998765433322222
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH
Q 003016 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 433 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 433 (857)
-+....+...|+.+.|...++.+.+.... +..++..+...|.+.|++++|..++..+.+ .+..+...
T Consensus 157 -----------~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~~~ 223 (409)
T TIGR00540 157 -----------IARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDDEE 223 (409)
T ss_pred -----------HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCHHH
Confidence 34577888899999999999999988633 456788899999999999999999999998 44433222
Q ss_pred H-------HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 003016 434 T-------FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 506 (857)
Q Consensus 434 t-------~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~ 506 (857)
. +..++..-......+.....+....+..+.+...+..+...+...|+.++|.+++++..+..
T Consensus 224 ~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---------- 293 (409)
T TIGR00540 224 FADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---------- 293 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----------
Confidence 2 11112111112223333344444333233588999999999999999999999999999855
Q ss_pred CCCCCCCHhHhh-hhHHH--HHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003016 507 GAPLKPDEYTYS-SMLEA--SATAHQWEYFEYVYKGMALSGCQLDQ---TKHAWLLVEASRAGKCHLLEHAFDSLLEAGE 580 (857)
Q Consensus 507 ~~~~~pd~~t~~-~ll~a--~~~~g~~~~a~~l~~~m~~~g~~pd~---~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi 580 (857)
||..... .++.. ....++.+.+.+.++...+. .|+. ....++-..|.+.|++++|.++|+.......
T Consensus 294 -----pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 294 -----GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred -----CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 6554210 12232 23347788888888777653 3443 4555777778899999999999995444445
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 581 IPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 581 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.|+...+..+...+.+.|+.++|.+++++-
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788888888889999999999999998873
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.20 E-value=8.9e-11 Score=125.79 Aligned_cols=259 Identities=13% Similarity=0.134 Sum_probs=109.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.+-..+.+.|++++|+++++......-.|+...| |..+...+...++.+.|...++++...+.. +...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~-----------~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~ 80 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEY-----------WRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc-----------cccccccccccccccccccccccccccccc-cccc
Confidence 4466678899999999999766555435666666 677777888899999999999999876644 4445
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVY 476 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~ 476 (857)
+..++.. ...+++++|..++....+ . .++...+..++..+...++++++..+++.+.. ....+...|..+...+
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~-~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 156 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYE-R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY 156 (280)
T ss_dssp -----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccc-c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 7777776 789999999999887655 2 25666778888889999999999999999776 3467888899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~L 555 (857)
.+.|+.++|++.+++..+.. |+ ....+.++..+...|+.+++.+++....+.. +.|+..+..+
T Consensus 157 ~~~G~~~~A~~~~~~al~~~---------------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l 220 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELD---------------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL 220 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred HHcCCHHHHHHHHHHHHHcC---------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 99999999999999999855 75 6677888888888999999888888877654 4555677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 556 LVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 556 l~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
..+|...|+.++|..+|+...... +.|+.....+..++...|+.++|..+.++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 888999999999999999887742 336777788888899999999999987765
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=6.2e-06 Score=88.32 Aligned_cols=429 Identities=11% Similarity=0.055 Sum_probs=316.1
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.+.+..|..+|+.-.... .-+...|...+..=.+...+..|+.+++..+...+. --..|-..+.+=-..|++..|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR----VdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR----VDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch----HHHHHHHHHHHHHHhcccHHH
Confidence 444566777777766554 346667777788888889999999999999865322 224677777777788999999
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 248 ~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
+++|++-.+ ..|+...|++.|..=.+....+.|..+|++..- +.|++.+|--...--.+.
T Consensus 161 RqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------------~HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 161 RQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------------VHPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------ecccHHHHHHHHHHHHhc
Confidence 999998765 479999999999999999999999999999875 789999998888888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 003016 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT-ASVYYELACCL 406 (857)
Q Consensus 328 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~ 406 (857)
|+...+..+|....+.- . |...- ...+.+....=.++..++.|.-+|+-..+.=.... ...|.....--
T Consensus 221 g~~~~aR~VyerAie~~-~-~d~~~--------e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 221 GNVALARSVYERAIEFL-G-DDEEA--------EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred CcHHHHHHHHHHHHHHh-h-hHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99999999999887641 1 11111 01124555555567888999999887665422221 22344444433
Q ss_pred HHCCCHH---HHHH-----HHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHH
Q 003016 407 CNNGRWQ---DAML-----VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI--GTVNAMLKVY 476 (857)
Q Consensus 407 ~~~g~~~---~A~~-----l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~--~~~~~li~~~ 476 (857)
-+.|+.. +++- -|+.+.+ ..+-|-.+|.-.+..-...|+.+...++|+....+++|-. ..|.-.|-..
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence 4456543 3332 2334443 3345666777777777888999999999999998877743 2343333222
Q ss_pred --------HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHh----cCCHHHHHHHHHHHHHc
Q 003016 477 --------SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASAT----AHQWEYFEYVYKGMALS 543 (857)
Q Consensus 477 --------~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~----~g~~~~a~~l~~~m~~~ 543 (857)
....+.+.+.++|....+ +.| ...||.-+--.|++ +.++..|.+++...+
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~---------------lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLD---------------LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh---------------hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 246788999999998887 445 55777766655554 478999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-ccCHHHH
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPF-HITERQW 622 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~-~p~~~~~ 622 (857)
|..|-..+|-..|..=.+.+.+|.+..+++...+-+ +-|..+|......-...|+.+.|..+|+-....|. ..-...|
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 788999999999999899999999999999998853 22556777666555667999999999999877664 3334678
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 623 TELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 623 ~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.+.+.--...|..+.++.+.+.+.+..-.
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 88888778889999999999999977543
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.18 E-value=7.1e-08 Score=109.05 Aligned_cols=291 Identities=11% Similarity=0.034 Sum_probs=193.3
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH--HHHHHHHHHHhcC
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA--AYHSVAVTLGQVG 278 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~--t~~~li~~~~~~g 278 (857)
..|+++.|.+.+....+.. |+ ...+-....++.+.|+++.|...|.+..+. .|+.. ..-.....+.+.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-----~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~ 167 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-----AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQN 167 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCC
Confidence 3589999999998775532 22 333444456677889999999999998763 25542 3334577788899
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMES 358 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 358 (857)
+++.|...++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.++.+.......-.
T Consensus 168 ~~~~Al~~l~~l~~~~----------------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~-- 229 (409)
T TIGR00540 168 ELHAARHGVDKLLEMA----------------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQ-- 229 (409)
T ss_pred CHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH--
Confidence 9999999999998863 3466778889999999999999999999999987543332210000
Q ss_pred HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH-
Q 003016 359 YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV---VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT- 434 (857)
Q Consensus 359 ~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~---~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t- 434 (857)
..+..++ ..+..+.+...+..+.+... ..+...+..+...+...|+.++|..++++..+. .||...
T Consensus 230 ---~a~~~~l----~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~ 299 (409)
T TIGR00540 230 ---KAEIGLL----DEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAI 299 (409)
T ss_pred ---HHHHHHH----HHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccc
Confidence 0011112 22222222234443333221 126667888889999999999999999988762 233331
Q ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 435 --FTGLIISSMDGGHIDDCISIFQHMKDHCEPNI--GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 435 --~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~--~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
.....-.....++.+.+.+.++...+..+-|. ....++-..|.+.|++++|.+.|+...... .
T Consensus 300 ~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-------------~ 366 (409)
T TIGR00540 300 SLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-------------E 366 (409)
T ss_pred hhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-------------c
Confidence 11111222345677777777777666444444 566778888888888888888888422222 4
Q ss_pred CCCHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 511 KPDEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 511 ~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.||...+..+...+...|+.++|.+++++..
T Consensus 367 ~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 367 QLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5888878888888888888888888887653
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.14 E-value=5.9e-06 Score=91.65 Aligned_cols=362 Identities=12% Similarity=0.045 Sum_probs=260.5
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHcCCChhhhhhhhhcCCCCCCC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIER----MRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
+|++..-++.|..+++..++ .++.+...|.+-...=-++|+.+...++..+ +...| +..
T Consensus 415 AlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ng---------------v~i 477 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANG---------------VEI 477 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcc---------------eee
Confidence 44555556666666666665 3555566665555555556666555555443 23333 555
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
|...|-.=-..|-..|..--+..+....+.-|+.-... ..+|+.-...|.+.+.++-|+.+|....+-.
T Consensus 478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~----------~~tw~~da~~~~k~~~~~carAVya~alqvf- 546 (913)
T KOG0495|consen 478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR----------KSTWLDDAQSCEKRPAIECARAVYAHALQVF- 546 (913)
T ss_pred cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh----------HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-
Confidence 56666555555555565555555555555555443222 3457888889999999999999998877654
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
..+...|...+..--.+|..+.-..+|.+... .++.....|......+-..|++..|+.++....+-.+.+...|-+-
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~--~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaa 624 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVE--QCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAA 624 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 33566788888888889999999999999886 5566666777777778889999999999999988555688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TK 551 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t 551 (857)
+..-..+..++.|..+|.+....+ |+...|.--+.----.++.++|.+++++.++ .-|+- ..
T Consensus 625 vKle~en~e~eraR~llakar~~s---------------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl 687 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSIS---------------GTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKL 687 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccC---------------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHH
Confidence 999999999999999999988754 8888887666666667899999999988876 34554 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 003016 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNED 631 (857)
Q Consensus 552 ~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~ 631 (857)
|..+-..+-+.++++.|...|..-.+. ++-.+..|-.|...--+.|.+-+|..++++-... ..-+...|-..+..-.+
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR 765 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELR 765 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHH
Confidence 666666678888888888888765442 2223456776666666778999999999886433 23356788888998889
Q ss_pred ccCHHHHHHHHHHHHh
Q 003016 632 RISRDKLEKLLNALCN 647 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~~ 647 (857)
.|+.+.|+.++....+
T Consensus 766 ~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 766 AGNKEQAELLMAKALQ 781 (913)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999888766654
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.3e-07 Score=96.62 Aligned_cols=322 Identities=13% Similarity=0.063 Sum_probs=224.9
Q ss_pred hhhcccccccccCCCcHHHHHHHHHHHhc------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003016 139 FAKNVEWHPEKRWRSEAEAIRVLVDRLSE------REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSV 212 (857)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l 212 (857)
+.+.|+.....+...-.+.++.+-+.|.+ .+..++|+++|-+|.+.. +-+..+-.+|-+.|-+.|.++.|+++
T Consensus 13 aa~GWymgrrsaqq~~~~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRi 91 (389)
T COG2956 13 AAYGWYMGRRSAQQDKQDQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRI 91 (389)
T ss_pred HHHHHHHhhhHHHhhHHHHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHH
Confidence 33444444333444444445544444332 466789999999999843 22333556677888899999999999
Q ss_pred HHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 213 LDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
|..+.++..-....-..+.-.|-.=|...|-++.|..+|..+.+. | .--......|+..|-...++++|.++-++..+
T Consensus 92 HQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k 169 (389)
T COG2956 92 HQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVK 169 (389)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999876522211112345566777889999999999999999873 1 12245677899999999999999999999888
Q ss_pred CCChhhhhhhhhcCCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHH
Q 003016 293 KPSKRIKNMHRKNWDPVLEPDL----VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLV 368 (857)
Q Consensus 293 ~g~~~l~~m~~k~f~~~~~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li 368 (857)
.+ ..+.. ..|.-+-..+....+.+.|..++.+..+...+--..+ -.+-
T Consensus 170 ~~---------------~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAs-------------i~lG 221 (389)
T COG2956 170 LG---------------GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRAS-------------IILG 221 (389)
T ss_pred cC---------------CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehh-------------hhhh
Confidence 76 33332 2355555666678899999999999987643322222 3567
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCH
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI 448 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~ 448 (857)
+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+ ....++. -..+-.--....-.
T Consensus 222 ~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~~~g~~~--~l~l~~lie~~~G~ 298 (389)
T COG2956 222 RVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-TNTGADA--ELMLADLIELQEGI 298 (389)
T ss_pred HHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-ccCCccH--HHHHHHHHHHhhCh
Confidence 78889999999999999999998776667788899999999999999999998876 3333332 22232222333334
Q ss_pred HHHHHHH-HHHhhCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 003016 449 DDCISIF-QHMKDHCEPNIGTVNAMLKVYSR---NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 449 ~~A~~if-~~m~~~~~p~~~~~~~li~~~~~---~g~~~~A~~lf~~M~~~g 496 (857)
+.|.... +.+.++ |+...+..+|+.-.. -|...+.+.+++.|....
T Consensus 299 ~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 299 DAAQAYLTRQLRRK--PTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHHHhhC--CcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 4454444 444444 999999999987654 355777788888887654
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.9e-06 Score=89.81 Aligned_cols=361 Identities=12% Similarity=0.065 Sum_probs=230.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH
Q 003016 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 185 g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~ 264 (857)
+..-|.+.+-..-..+-..|....|...|-.++.. -+..|.+-+...--.-+.+.+..+-...+.+ +.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-------~P~~W~AWleL~~lit~~e~~~~l~~~l~~~-----~h 226 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-------YPWFWSAWLELSELITDIEILSILVVGLPSD-----MH 226 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-------CCcchHHHHHHHHhhchHHHHHHHHhcCccc-----ch
Confidence 33344443333333455667778888887766542 1234555444433334444433332222110 11
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 265 AA-YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 265 ~t-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.. =--+..++-.....+++++-.+.....| +.-+...-+-.-.+.-...++++|..+|+++++.
T Consensus 227 ~M~~~F~~~a~~el~q~~e~~~k~e~l~~~g---------------f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn 291 (559)
T KOG1155|consen 227 WMKKFFLKKAYQELHQHEEALQKKERLSSVG---------------FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN 291 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 11 1123345555567777777777777665 4444433333333445678899999999999887
Q ss_pred CC--CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003016 344 GL--KPSAATYGLAMESYRRCLLKVLVRAFWEEGKI---NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV 418 (857)
Q Consensus 344 g~--~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~---~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l 418 (857)
.. --|..+|+.+| |.+..+- --|..+++- ....| .|...+.+-|+-.++.++|...
T Consensus 292 DPYRl~dmdlySN~L--------------Yv~~~~skLs~LA~~v~~i---dKyR~--ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 292 DPYRLDDMDLYSNVL--------------YVKNDKSKLSYLAQNVSNI---DKYRP--ETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred CCCcchhHHHHhHHH--------------HHHhhhHHHHHHHHHHHHh---ccCCc--cceeeehhHHHHHHhHHHHHHH
Confidence 32 12566664322 2222211 122222221 11122 2456666777888889999999
Q ss_pred HHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 419 VEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497 (857)
Q Consensus 419 ~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~ 497 (857)
|+...+ +.|. ...|+.+-.-|....+...|.+-++...+-++.|-..|-.|-.+|.-.++..-|+-.|++...
T Consensus 353 FkRALk---LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--- 426 (559)
T KOG1155|consen 353 FKRALK---LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--- 426 (559)
T ss_pred HHHHHh---cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh---
Confidence 988876 2333 456777778888889999999999988887788889999999999999999999999998887
Q ss_pred CCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 498 SGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 498 ~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
++| |...|.+|-.+|.+.++.++|+..|......| ..+...+..|...|-+.++.++|..+|..-.
T Consensus 427 ------------~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 427 ------------LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred ------------cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 557 77889999999999999999999999888765 3366788888888999999999998887665
Q ss_pred HC----CCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHh
Q 003016 577 EA----GEIPHPLFFTE--MLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 577 ~~----gi~p~~~~~~~--li~~~~~~g~~~~A~~l~~~M 610 (857)
+. |..-+.....+ |-.-+.+.+++++|.......
T Consensus 494 ~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 494 EVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 42 44333222221 334455668888876655544
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=2.9e-08 Score=110.50 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=223.3
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh-hHHHH
Q 003016 171 TAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP-HEALR 249 (857)
Q Consensus 171 ~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~-~~A~~ 249 (857)
..+|...|..... .+.-+......+-++|-..++.++|.++|+.+.+..+. ...+..+|.+.+--+-+.-.+ -.|..
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 3689999998443 33445578888999999999999999999999776443 234778888887655433221 12344
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcC
Q 003016 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSH 328 (857)
Q Consensus 250 vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g 328 (857)
+.+.++ -.+.||.++-++|.-.++.+.|++.|++..+. .| ...+|+.+-.-+....
T Consensus 413 Li~~~~------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-----------------dp~faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 413 LIDTDP------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-----------------DPRFAYAYTLLGHESIATE 469 (638)
T ss_pred HHhhCC------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-----------------CCccchhhhhcCChhhhhH
Confidence 444443 35789999999999999999999999999884 45 7889998888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 003016 329 QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN 408 (857)
Q Consensus 329 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~ 408 (857)
.++.|...|+..+ ..|...|+. |--|.-.|.|.++++.|+-.|+...+-+.. +.+....+...+-+
T Consensus 470 e~d~a~~~fr~Al----~~~~rhYnA---------wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~ 535 (638)
T KOG1126|consen 470 EFDKAMKSFRKAL----GVDPRHYNA---------WYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQ 535 (638)
T ss_pred HHHhHHHHHHhhh----cCCchhhHH---------HHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHH
Confidence 9999999998876 346666643 677888999999999999999998877644 33445556667788
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 488 (857)
.|+.++|+.+|++..... ..|..+-......+...++.++|.+.++++++-.+.+..++..+...|.+.|+.+.|+.-
T Consensus 536 ~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 999999999999987622 234444444555667789999999999999987777788999999999999999999999
Q ss_pred HHHHHHcC
Q 003016 489 FEETTRAN 496 (857)
Q Consensus 489 f~~M~~~g 496 (857)
|.-+.+..
T Consensus 614 f~~A~~ld 621 (638)
T KOG1126|consen 614 FSWALDLD 621 (638)
T ss_pred hHHHhcCC
Confidence 99887744
No 47
>PF13041 PPR_2: PPR repeat family
Probab=99.09 E-value=1.8e-10 Score=87.86 Aligned_cols=50 Identities=30% Similarity=0.638 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHh
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~ 526 (857)
||+.+||++|++|++.|++++|.++|++|.+.| +.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g-------------~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG-------------IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 99999999999999975
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=3.2e-10 Score=86.54 Aligned_cols=50 Identities=26% Similarity=0.581 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh
Q 003016 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP 326 (857)
Q Consensus 262 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~ 326 (857)
||+++||++|.+|++.|++++|.++|++|.+.| +.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g---------------~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG---------------IKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC---------------CCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 99999999999999985
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.06 E-value=5.5e-05 Score=84.15 Aligned_cols=509 Identities=12% Similarity=0.137 Sum_probs=274.9
Q ss_pred cCChhHHHHHhhhhhcccccccccccccchhchHHHHHHHHhhhhhcccccccchhhhhhhcccccccccCCCcHHHHHH
Q 003016 81 VGKPWERIERLKFRQLASESKEFAGDNLKRENLRELKEMFEKDLNWVLDDDVQLGSDYFAKNVEWHPEKRWRSEAEAIRV 160 (857)
Q Consensus 81 ~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (857)
+.+-|...-+.....+..-+.+.+ +...+..+|+..+.. +.+-|.+....... .-+++++...+.
T Consensus 59 sykiW~~YL~~R~~~vk~~~~T~~-------~~~~vn~c~er~lv~-mHkmpRIwl~Ylq~-------l~~Q~~iT~tR~ 123 (835)
T KOG2047|consen 59 SYKIWYDYLKARRAQVKHLCPTDP-------AYESVNNCFERCLVF-MHKMPRIWLDYLQF-------LIKQGLITRTRR 123 (835)
T ss_pred chHHHHHHHHHHHHHhhccCCCCh-------HHHHHHHHHHHHHHH-HhcCCHHHHHHHHH-------HHhcchHHHHHH
Confidence 445566555555555555555655 555566666664421 11112222211111 224455555555
Q ss_pred HHHHHh--------------------cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCc
Q 003016 161 LVDRLS--------------------EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK 220 (857)
Q Consensus 161 l~~~l~--------------------~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~ 220 (857)
.|++-. +.+..+-++.++++-.+ .++..-.-.|.-++..+++++|.+.+..++...
T Consensus 124 tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d 199 (835)
T KOG2047|consen 124 TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQD 199 (835)
T ss_pred HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCch
Confidence 555433 33333444444444432 233345667788889999999999998876442
Q ss_pred C---CCCCCCHHHHHHHHHHHHHcCChhHHHH---HHHHhHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 221 D---KRDLKSRFVYTKLLAILGKAGRPHEALR---IFNLMLEDCNLYPD--IAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 221 ~---~~~~~~~~~~n~Li~~y~k~g~~~~A~~---vf~~m~~~~gi~pd--~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
. +....+...|+-+-+..++.-+.-..+. +++.+.. ..+| ...|++|..-|.+.|.++.|..+|++..+
T Consensus 200 ~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~---rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 200 EFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR---RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred hhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc---cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 1 1122356778888887777655544433 3444432 3456 35799999999999999999999988765
Q ss_pred CCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----------------cC------ChHHHHHHHHHHHHcCC-----
Q 003016 293 KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----------------SH------QWKGVFWVFKQLRKSGL----- 345 (857)
Q Consensus 293 ~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----------------~g------~~~~A~~l~~~m~~~g~----- 345 (857)
.- ..+.-|+.+.++|++ .+ +++..+.-|+.+...+.
T Consensus 277 ~v-----------------~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 277 TV-----------------MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hh-----------------eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 42 111122222222221 11 11222222333322210
Q ss_pred -----CC-CHHH------------------HHHHHHHHH--------HhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 003016 346 -----KP-SAAT------------------YGLAMESYR--------RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV 393 (857)
Q Consensus 346 -----~p-d~~t------------------~~~ll~~~~--------~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~ 393 (857)
.| ++.+ |+-++.... ...|..+.+.|-..|+++.|+.+|++...-...
T Consensus 340 VlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 01 1111 111111111 556788889999999999999999887664433
Q ss_pred CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------CCCC-cH------HHHHHHHHHHHcCCCHHHHHHH
Q 003016 394 GT---ASVYYELACCLCNNGRWQDAMLVVEKIKSLR---------HSKP-LE------ITFTGLIISSMDGGHIDDCISI 454 (857)
Q Consensus 394 ~d---~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~---------g~~p-d~------~t~~~ll~a~~~~g~~~~A~~i 454 (857)
-- ..+|..-...=.++.+++.|+.+.+...... +..| .. ..|+..++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 21 3345555555566778888888776654310 1111 11 1233344444457888888888
Q ss_pred HHHHhh-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhc---C
Q 003016 455 FQHMKD-H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATA---H 528 (857)
Q Consensus 455 f~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~---g 528 (857)
++.+.+ . ..|-++.--+| .+-.+..++++.+++++-...- --|++. .|+.-|.-+.+. .
T Consensus 500 YdriidLriaTPqii~NyAm--fLEeh~yfeesFk~YErgI~LF-------------k~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAM--FLEEHKYFEESFKAYERGISLF-------------KWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhhHHHHHHHHHHHcCCccC-------------CCccHHHHHHHHHHHHHHHhcCC
Confidence 888877 3 44444332222 2345667888888887654433 235553 566666555443 4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H-HHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHH
Q 003016 529 QWEYFEYVYKGMALSGCQLDQTKHAWLLVE-A-SRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 529 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-~-~~~G~~~~A~~~~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~ 604 (857)
.++.|..+|++..+ |++|...-+--|+.+ + -+.|....|+.++++... ++++. ...||..|.-....=-+....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR 642 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTR 642 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccH
Confidence 68999999999888 777776544444433 2 355888888999888654 34442 346666665433321122223
Q ss_pred HHHHHhhhCCCccCHHHHHHHHH---HhhhccCHHHHHHHHHHHHh
Q 003016 605 ALINAMAYAPFHITERQWTELFE---SNEDRISRDKLEKLLNALCN 647 (857)
Q Consensus 605 ~l~~~M~~~~~~p~~~~~~~Ll~---a~~~~g~~e~~~~l~~~m~~ 647 (857)
.++++..+. -|+...-...+. --.+.|..+.|+.+...-.+
T Consensus 643 ~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 643 EIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 334443322 344332222222 22455677777777655543
No 50
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=6.3e-05 Score=80.84 Aligned_cols=405 Identities=10% Similarity=0.067 Sum_probs=281.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
++..+..|..+++.-... .|-.. .|-..+-.=-..|++..|+++|+.-.. -.|+...|++.|+.=.+-..++
T Consensus 119 knk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeie 191 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIE 191 (677)
T ss_pred hhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHH
Confidence 344444455555444322 23222 233334444556899999999987653 4689999999999999999999
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHH
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV 325 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~ 325 (857)
.|+.++++..- ++|++.+|---..-=-++|....|..+|+.....-++ -.-+...|++...--.
T Consensus 192 raR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-------------d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 192 RARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-------------DEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-------------HHHHHHHHHHHHHHHH
Confidence 99999999875 5699999999999999999999999999988764200 1112233444433334
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHH---HHHHH-----HHHHhhcCCCCCHH
Q 003016 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKIN---EAVAA-----VRNMEQRGVVGTAS 397 (857)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~---~A~~l-----f~~m~~~~~~~d~~ 397 (857)
++..++.|.-+|+..+..= |...+- ..|..+...=-+-|+.. ++.-- ++.+...+ ..|-.
T Consensus 256 ~qkE~ERar~iykyAld~~--pk~rae---------eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYD 323 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHI--PKGRAE---------ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHhc--CcccHH---------HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCch
Confidence 5778899999999888753 322211 00233333334445543 33322 23333333 33556
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH-------HHHHHHHHH---HcCCCHHHHHHHHHHHhhCCCCCHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI-------TFTGLIISS---MDGGHIDDCISIFQHMKDHCEPNIG 467 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~A~~if~~m~~~~~p~~~ 467 (857)
+|-..+..-...|+.+...++|+.... +++|-.. .|.-+=-+| ....+++.+.++|+...+-++....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence 677788888888999999999999876 6677321 222221122 3578999999999998886666778
Q ss_pred HHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 468 TVNAMLKVYS----RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 468 ~~~~li~~~~----~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
|+.-+--+|+ ++.++..|.+++..... .-|-..+|..-|.-=.+.+.++.+..+++..+..
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG---------------~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG---------------KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc---------------cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 8887777776 56889999999988765 4588899988888888889999999999999874
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHH
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAG-EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQW 622 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g-i~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~ 622 (857)
+ +-|..++......=...|+.+.|..+|....+.+ +......|-+.|+--...|.++.|..+++++++.. +...+|
T Consensus 467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvW 543 (677)
T KOG1915|consen 467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVW 543 (677)
T ss_pred C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHH
Confidence 3 2244566655555567799999999999888763 33446788888888888999999999999987543 222355
Q ss_pred HHHH
Q 003016 623 TELF 626 (857)
Q Consensus 623 ~~Ll 626 (857)
.++-
T Consensus 544 isFA 547 (677)
T KOG1915|consen 544 ISFA 547 (677)
T ss_pred HhHH
Confidence 4443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.1e-06 Score=89.93 Aligned_cols=289 Identities=13% Similarity=0.143 Sum_probs=181.2
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH------HHHHHHHHHHHhc
Q 003016 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI------AAYHSVAVTLGQV 277 (857)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~------~t~~~li~~~~~~ 277 (857)
...++|..+|-.|.+. +..+..+--+|-+.|-+.|..+.|+++-..+.++ ||. ...-.|..-|...
T Consensus 49 ~Q~dKAvdlF~e~l~~----d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 49 NQPDKAVDLFLEMLQE----DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred cCcchHHHHHHHHHhc----CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHh
Confidence 4567888888888663 2234556667777888888888888888888775 552 2344556667778
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAME 357 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 357 (857)
|-+|.|.++|..+...| .--....-.|+..|-+..+|++|+++-+++.+.|-.+..+-.
T Consensus 121 Gl~DRAE~~f~~L~de~----------------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI----- 179 (389)
T COG2956 121 GLLDRAEDIFNQLVDEG----------------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI----- 179 (389)
T ss_pred hhhhHHHHHHHHHhcch----------------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH-----
Confidence 88888888888887654 233445667888888888888888888888777655443321
Q ss_pred HHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 003016 358 SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTG 437 (857)
Q Consensus 358 ~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ 437 (857)
+..|.-|...+....+++.|..++.+..+.+...... --.+-..+...|+++.|++.++...+ .+..--..+...
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA-si~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~ 254 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRA-SIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEM 254 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh-hhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHH
Confidence 1124556666666777888888887776655332111 22345566777888888888887776 332223345667
Q ss_pred HHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh
Q 003016 438 LIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 517 (857)
Q Consensus 438 ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~ 517 (857)
|..+|.+.|+.+++...+..+.+. .++...-..|-..-....-.+.|.....+-... +|+...+
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~-~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---------------~Pt~~gf 318 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET-NTGADAELMLADLIELQEGIDAAQAYLTRQLRR---------------KPTMRGF 318 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc-cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---------------CCcHHHH
Confidence 777777777777777777776651 123333333333333334445555555555443 3777777
Q ss_pred hhhHHHHHhc---CCHHHHHHHHHHHHH
Q 003016 518 SSMLEASATA---HQWEYFEYVYKGMAL 542 (857)
Q Consensus 518 ~~ll~a~~~~---g~~~~a~~l~~~m~~ 542 (857)
..+|..-..- |...+-+.+++.|+.
T Consensus 319 ~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 319 HRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHhhhccccccchhhhHHHHHHHHH
Confidence 7766643332 345555555555554
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.99 E-value=2.3e-06 Score=90.36 Aligned_cols=285 Identities=13% Similarity=0.049 Sum_probs=228.7
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++..|.++..+-.+.+ .. -...|..-..+.-+.|+.+.+-.++.+..+.--.++...+
T Consensus 97 eG~~~qAEkl~~rnae~~---------------e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~---- 156 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG---------------EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVE---- 156 (400)
T ss_pred cCcHHHHHHHHHHhhhcC---------------cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHH----
Confidence 599999999999977765 23 3445666667777899999999999999876445555554
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH----
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE---- 432 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---- 432 (857)
-+........|+.+.|..-.++..+.+..+ .........+|.+.|++.....+...|.+ .+.--|.
T Consensus 157 --------ltrarlll~~~d~~aA~~~v~~ll~~~pr~-~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~ 226 (400)
T COG3071 157 --------LTRARLLLNRRDYPAARENVDQLLEMTPRH-PEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAAR 226 (400)
T ss_pred --------HHHHHHHHhCCCchhHHHHHHHHHHhCcCC-hHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHH
Confidence 667778889999999999999988877554 44588899999999999999999999998 6765553
Q ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 003016 433 ---ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509 (857)
Q Consensus 433 ---~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~ 509 (857)
.+|..+++-+...+..+.-...++..+.....++..-.+++.-+.++|+.++|.++..+..+.+
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~------------- 293 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ------------- 293 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-------------
Confidence 4689999999999988888899999988777788888899999999999999999999998877
Q ss_pred CCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003016 510 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTE 589 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~ 589 (857)
..|+. ..+-.+.+.++.+.-++..++-.+. .+-++-.+.+|-..|.+.+.+.+|..+|+...+ ..|+..+|+-
T Consensus 294 ~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~ 366 (400)
T COG3071 294 WDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAE 366 (400)
T ss_pred cChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHH
Confidence 44542 2234556667777766666655542 223346778888889999999999999996665 5789999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhh
Q 003016 590 MLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 590 li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+-.++.+.|+.++|.+..++-.
T Consensus 367 la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 367 LADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 9999999999999999988743
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.98 E-value=1.6e-05 Score=84.21 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=224.7
Q ss_pred cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003016 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE 282 (857)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~ 282 (857)
.|+|.+|.++...--+. +.. ....|..-..+--+.|+.+.|-+.+.+..+. .-.++...+-+........|++..
T Consensus 97 eG~~~qAEkl~~rnae~---~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH---GEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhc---Ccc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchh
Confidence 48999999998775433 211 3445555556667789999999999999874 123556677777888899999999
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
|..-+++....+ +.+.........+|.+.|++.....++..|.+.|+-.|...- -+-..
T Consensus 172 A~~~v~~ll~~~----------------pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----~le~~ 230 (400)
T COG3071 172 ARENVDQLLEMT----------------PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----RLEQQ 230 (400)
T ss_pred HHHHHHHHHHhC----------------cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----HHHHH
Confidence 999999988764 557778899999999999999999999999999976665432 11123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
+|+.+++-....+..+.-...++..+++ ..-+...-.+++.-+.+.|+.++|.++..+..+ .+..|. -..+-.+
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~----L~~~~~~ 304 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPR----LCRLIPR 304 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChh----HHHHHhh
Confidence 3567776666666666655666666543 222334466778889999999999999998888 666666 2223345
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHH
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE 522 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~ 522 (857)
.+.++.+.-.+..+.-.+..+-+...+.+|-..|.+++.|.+|...|+...+ ..|+..+|+-+-.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~---------------~~~s~~~~~~la~ 369 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK---------------LRPSASDYAELAD 369 (400)
T ss_pred cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh---------------cCCChhhHHHHHH
Confidence 6677777777766666664555668899999999999999999999998877 4599999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003016 523 ASATAHQWEYFEYVYKGMALSGCQLD 548 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~g~~pd 548 (857)
++...|+.++|.+++++....-.+|+
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 99999999999999988765444443
No 54
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.8e-05 Score=83.46 Aligned_cols=355 Identities=12% Similarity=0.048 Sum_probs=238.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.|.+.+-..--.+-+.|....|...|...... -+.-|.+-+....-..+.+.+..+. ..
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-----~P~~W~AWleL~~lit~~e~~~~l~----~~------------ 220 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-----YPWFWSAWLELSELITDIEILSILV----VG------------ 220 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-----CCcchHHHHHHHHhhchHHHHHHHH----hc------------
Confidence 35544444444555677888888888777652 2233333332222222222222211 11
Q ss_pred CCCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 306 WDPVLEPDLVVYN--AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 306 f~~~~~pd~~t~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
...|...+. -+..++....+.+++.+=...+...|+.-+...- +-...++-...++++|+.+
T Consensus 221 ----l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~------------~~~A~~~y~~rDfD~a~s~ 284 (559)
T KOG1155|consen 221 ----LPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIK------------TQIAAASYNQRDFDQAESV 284 (559)
T ss_pred ----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHH------------HHHHHHHhhhhhHHHHHHH
Confidence 122211111 2344555666788888888888877765554432 3333344567899999999
Q ss_pred HHHHhhcCC--CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003016 384 VRNMEQRGV--VGTASVYYELACCLCNNGRWQD---AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHM 458 (857)
Q Consensus 384 f~~m~~~~~--~~d~~t~~~lI~~~~~~g~~~~---A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m 458 (857)
|+++.+.+. .-|..+|+-++ |.++.+-.- |..++.- ...+| .|...+-+-|+-.++.++|...|+..
T Consensus 285 Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~~i----dKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRA 356 (559)
T KOG1155|consen 285 FEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVSNI----DKYRP--ETCCIIANYYSLRSEHEKAVMYFKRA 356 (559)
T ss_pred HHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHHHh----ccCCc--cceeeehhHHHHHHhHHHHHHHHHHH
Confidence 999988753 23566777665 344433222 2222211 23344 46777778888899999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 459 KDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 459 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.+--+.....|+.|-+-|....+...|.+-++...+-+ +.|-..|-.+-++|...+...-|+-.|+
T Consensus 357 LkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--------------p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 357 LKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--------------PRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--------------chhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 88555667899999999999999999999999998854 2388899999999999999999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh----hC
Q 003016 539 GMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA----YA 613 (857)
Q Consensus 539 ~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~----~~ 613 (857)
+... ++| |+..+.+|-.+|.+.++.++|++.|......|-. +...+..|-..+-+.++..+|...|.+-. ..
T Consensus 423 kA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~e 499 (559)
T KOG1155|consen 423 KALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELE 499 (559)
T ss_pred HHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 9886 555 5779999999999999999999999998886532 55788889999999999999999887743 34
Q ss_pred CCccCHHHHHHHH--HHhhhccCHHHHHHHH
Q 003016 614 PFHITERQWTELF--ESNEDRISRDKLEKLL 642 (857)
Q Consensus 614 ~~~p~~~~~~~Ll--~a~~~~g~~e~~~~l~ 642 (857)
|..-+......++ .-..+.+++++|....
T Consensus 500 g~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 500 GEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 5444433333322 3344556666655543
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.95 E-value=3.8e-07 Score=93.71 Aligned_cols=200 Identities=17% Similarity=0.077 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
...+..+...|...|++++|...|++.... .+.+...+..+...|...|++++|.+.+++.....
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 95 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN------------- 95 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 456666777777777777777777777652 12345666777777777777777777777776542
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.+...+..+...+...|++++|.+.+....+....|..... +..+...|...|++++|...|++.
T Consensus 96 ---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 96 ---PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARS-----------LENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred ---CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHH-----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334556666666777777777777777777654222222111 244555666667777777777666
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
.+.... +...|..+...+...|++++|...+++.... ...+...+..+...+...|+.+.|..+.+.+.
T Consensus 162 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 162 LQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 554322 2344556666666666666666666666552 22233344444455555555555555554443
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=2.2e-07 Score=103.73 Aligned_cols=281 Identities=12% Similarity=0.086 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHH
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL-VVYNAVLNACVPSHQWKGVFWVFKQLRKSG--LKPSAATYGLA 355 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~l 355 (857)
+..+|..+|..... ..+|. ....-+-.+|...+++++|..+|+.+++.. ..-+..+|+++
T Consensus 334 ~~~~A~~~~~klp~-----------------h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~ 396 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-----------------HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTT 396 (638)
T ss_pred HHHHHHHHHHhhHH-----------------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHH
Confidence 34677788877444 33443 444557788999999999999999998753 12255566433
Q ss_pred HHHHHHhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHH
Q 003016 356 MESYRRCLLKVLVRAFWEEG-KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEI 433 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g-~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~ 433 (857)
|-..- +.- ----|..+.+.++ -...+|-++..+|.-+++.+.|++.|++..+ +.| ..+
T Consensus 397 LWHLq------------~~v~Ls~Laq~Li~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faY 456 (638)
T KOG1126|consen 397 LWHLQ------------DEVALSYLAQDLIDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAY 456 (638)
T ss_pred HHHHH------------hhHHHHHHHHHHHhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccch
Confidence 32111 100 0011222222222 2345799999999999999999999988765 455 677
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP- 512 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p- 512 (857)
+|+.+-.-+.....+|.|...|+....-.+.+-..|.-|...|.+.++++.|+-.|++...-+ |
T Consensus 457 ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---------------P~ 521 (638)
T KOG1126|consen 457 AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---------------PS 521 (638)
T ss_pred hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---------------cc
Confidence 888888888888999999999998887222333444456778899999999999999988744 6
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEML 591 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li 591 (857)
+.+....+...+-+.|+.++|++++++.....-. |+..-......+...+++++|...++++++ +.|+ ...|..+.
T Consensus 522 nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llg 598 (638)
T KOG1126|consen 522 NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLG 598 (638)
T ss_pred chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 5556666677778889999999999998864322 333333344445667899999999999987 4565 45677777
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC
Q 003016 592 IQAIVQSNYEKAVALINAMAYAP 614 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~~~~ 614 (857)
..|.+.|+.+.|+.-|--|....
T Consensus 599 ki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 599 KIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHccchHHHHhhHHHhcCC
Confidence 78888899999998888776443
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.93 E-value=7e-07 Score=91.75 Aligned_cols=199 Identities=11% Similarity=0.010 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...+..+...|...|++++|...+++.... .+.+...+..+...|...|++++|...++...+..+.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 445667777788888888888888877652 223345666677777777888888888777766444556677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
|...|++++|.+.|.+..... ..| ....+..+...+...|++++|...+.+..... +.+...+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 174 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-------------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLE 174 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-------------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHH
Confidence 778888888888887776532 112 23445556666677777777777777766532 223445666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+...+...|++++|..+++...+. ...+...+..+...+...|+.++|..+.+.+.
T Consensus 175 la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 175 LAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666677777777777777776665 23345555566666666777777777766653
No 58
>PRK12370 invasion protein regulator; Provisional
Probab=98.84 E-value=1.3e-06 Score=102.58 Aligned_cols=266 Identities=10% Similarity=-0.018 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH---------cCChhHHHHHHHH
Q 003016 188 FTEGQMLKLLKGLGD-----KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK---------AGRPHEALRIFNL 253 (857)
Q Consensus 188 p~~~t~~~ll~a~~~-----~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k---------~g~~~~A~~vf~~ 253 (857)
.+...|...+.+-.. .++++.|...|+..++..+ .+...|..+..+|.. .+++++|...+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP----~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP----NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 344555566555322 2457899999999987532 256667666655542 2447899999999
Q ss_pred hHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003016 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGV 333 (857)
Q Consensus 254 m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A 333 (857)
..+. -+-+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|
T Consensus 330 Al~l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~----------------P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 330 ATEL--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS----------------PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHhc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 8873 23367888888889999999999999999998753 33567788888899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 334 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
...+++..+.. |+...+ +..+...+...|++++|...+++.......-+...+..+..+|...|+.+
T Consensus 392 i~~~~~Al~l~--P~~~~~-----------~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 392 LQTINECLKLD--PTRAAA-----------GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHHHHHHhcC--CCChhh-----------HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHH
Confidence 99999998864 442211 02334456668999999999999876543324445777888899999999
Q ss_pred HHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFE 490 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~~~~~~~li~~~~~~g~~~~A~~lf~ 490 (857)
+|...+.++.. ..|+..+ .+.+...|+..| +.|...++.+.+. ..+.-..+ +-..|+-.|+-+.+..+ +
T Consensus 459 eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~ 530 (553)
T PRK12370 459 LARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-N 530 (553)
T ss_pred HHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-H
Confidence 99999988765 2444443 455556667777 5888888877662 23333333 33445566776666666 8
Q ss_pred HHHHcC
Q 003016 491 ETTRAN 496 (857)
Q Consensus 491 ~M~~~g 496 (857)
++.+.+
T Consensus 531 ~~~~~~ 536 (553)
T PRK12370 531 KFKNED 536 (553)
T ss_pred Hhhccc
Confidence 887766
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.2e-05 Score=83.56 Aligned_cols=407 Identities=10% Similarity=0.011 Sum_probs=235.2
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFT-EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~-~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
+.+-+++.+++|+++|.+-... .|| +.-|.....+|...|+|+...+--...++..++ -+-+++.=.+++-..
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~----Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD----YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH----HHHHHHHHHHHHHhh
Confidence 3455788999999999998875 588 777888888899999999999888877664221 234455555566666
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HH-HHcCC-----ChhhhhhhhhcCC
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLI--------ER-MRQKP-----SKRIKNMHRKNWD 307 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~--------~~-m~~~g-----~~~l~~m~~k~f~ 307 (857)
|++++|+.=. |-.+++.++....-.--+.+++ .+ |...+ +...+.-|...|.
T Consensus 197 g~~~eal~D~--------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 197 GKFDEALFDV--------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred ccHHHHHHhh--------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 7766664322 2233333333322222222222 11 21111 1222333333333
Q ss_pred CCCCCC-----HHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 308 PVLEPD-----LVVYNAVLNACVP--SH---QWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 308 ~~~~pd-----~~t~~~li~~~~~--~g---~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
..+.|. ..+...+..++.. .+ .+..|...+.+-.... ..++.-+...-+.-+ +.+...--..+.-+|+
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~-A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYM-AEALLLRGTFHFLKGD 341 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHH-HHHHHHhhhhhhhcCC
Confidence 222211 0111122222111 11 2222222222211100 011110000000000 0000111223445688
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 377 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
.-.|..-|+.....+..++.. |--+...|.+..+.++....|....+...- |..+|-.--+++.-.+++++|..=|+
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred chhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 888888888887766554432 666777888888888888888888763333 33455555555566678888888888
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHH
Q 003016 457 HMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYV 536 (857)
Q Consensus 457 ~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l 536 (857)
....--+-++..|--+--+.-|.+.+++++..|++..+.- .--...|+.....+...++++.|.+.
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------------P~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------------PNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 8877444456666666666678888999999998888764 22345677777788888889999988
Q ss_pred HHHHHHc-----CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 537 YKGMALS-----GCQ--LDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 537 ~~~m~~~-----g~~--pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
|+..++. ++. +.+.+.-+++..-.+ ++++.|..+++...+. .| ....|-+|-..-.+.|+.++|+++|+
T Consensus 485 YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 8887753 111 112333344433333 7888888888887764 23 34677888888888899999999888
Q ss_pred Hh
Q 003016 609 AM 610 (857)
Q Consensus 609 ~M 610 (857)
+-
T Consensus 562 ks 563 (606)
T KOG0547|consen 562 KS 563 (606)
T ss_pred HH
Confidence 75
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=98.79 E-value=2.3e-06 Score=100.59 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHH-----cCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHH
Q 003016 226 KSRFVYTKLLAILGK-----AGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLG---------QVGLLKELVKLIERM 290 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k-----~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~---------~~g~~~~A~~l~~~m 290 (857)
.+...|...+.+-.. .+..+.|...|++..+. .|+ ...|..+..+|. ..+++++|...+++.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l---dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM---SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 355556565555322 13467899999998873 464 455655555443 224478999999998
Q ss_pred HcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 003016 291 RQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRA 370 (857)
Q Consensus 291 ~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~ 370 (857)
.+.. +-+...|..+-..+...|++++|...|++..+.. |+.... +..+...
T Consensus 331 l~ld----------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a-----------~~~lg~~ 381 (553)
T PRK12370 331 TELD----------------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADI-----------KYYYGWN 381 (553)
T ss_pred HhcC----------------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHH-----------HHHHHHH
Confidence 8753 3467778888778888999999999999988763 554332 3667788
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHH
Q 003016 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHID 449 (857)
Q Consensus 371 y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~ 449 (857)
|...|+.++|...+++..+.+.... ..+..+...+...|++++|...+++... . ..|+ ...+..+-.++...|+.+
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~~-~~~~~~~~~~~~~g~~eeA~~~~~~~l~-~-~~p~~~~~~~~la~~l~~~G~~~ 458 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTRA-AAGITKLWITYYHTGIDDAIRLGDELRS-Q-HLQDNPILLSMQVMFLSLKGKHE 458 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCh-hhHHHHHHHHHhccCHHHHHHHHHHHHH-h-ccccCHHHHHHHHHHHHhCCCHH
Confidence 8888999999999998877664422 2233344456667888888888888765 2 2243 334555666677888888
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
+|...+..+....+.+...++.+...|++.| ++|...++.+.+.
T Consensus 459 eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 459 LARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8888887776543344555666666677777 4777767666553
No 61
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.74 E-value=2.1e-05 Score=89.88 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAY-HSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+...|++++|++.+..-... .+|..+| ......+.+.|+.++|..+|..+...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r 67 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR 67 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345667777777766654432 2444333 33445566667777777777776664
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=3.4e-05 Score=88.18 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=200.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY-NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (857)
...+...|++++|++.+..-.. ..+|..+| ......+.+.|+.++|..++..+++.+ |+.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~-----------------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn 71 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK-----------------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDN 71 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh-----------------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc
Confidence 3456788999999999987654 34565554 455666889999999999999999874 788
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHc-----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHH
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEE-----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ-DAMLVVEKIK 423 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~-----g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~-~A~~l~~~m~ 423 (857)
..| |..|..+..-. ...+....+++++...-...+..-.-.| .+.....+. .+...+..+.
T Consensus 72 ~~Y-----------y~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L--~~~~g~~F~~~~~~yl~~~l 138 (517)
T PF12569_consen 72 YDY-----------YRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPL--DFLEGDEFKERLDEYLRPQL 138 (517)
T ss_pred HHH-----------HHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhc--ccCCHHHHHHHHHHHHHHHH
Confidence 887 56666665322 3577888889988766533332222211 122212232 3344455555
Q ss_pred hcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---------------CCCCHHHH--HHHHHHHHhcCCHHHHH
Q 003016 424 SLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---------------CEPNIGTV--NAMLKVYSRNDMFSKAK 486 (857)
Q Consensus 424 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---------------~~p~~~~~--~~li~~~~~~g~~~~A~ 486 (857)
. .|+++ +|+.|-..|......+-..+++...... -.|....| .-+-..|...|++++|+
T Consensus 139 ~-KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 139 R-KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred h-cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5 56553 5666666677666666666666665431 13444444 56677888999999999
Q ss_pred HHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003016 487 ELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC 565 (857)
Q Consensus 487 ~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~ 565 (857)
+++++..... |+. ..|..-...+-+.|++++|.+..+....... -|...-+-....+.++|++
T Consensus 215 ~~Id~aI~ht---------------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 215 EYIDKAIEHT---------------PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhcC---------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCH
Confidence 9999998854 753 4666677788899999999999999887542 3666777777788999999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHH--HHHHHHHHcCCHHHHHHHHHHhh
Q 003016 566 HLLEHAFDSLLEAGEIPHP------LFFT--EMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 566 ~~A~~~~~~m~~~gi~p~~------~~~~--~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
++|.+++......+..|-. ..|- ..-.+|.+.|++..|+..|....
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999998877654421 1332 33557888999999988877653
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.66 E-value=0.0013 Score=73.96 Aligned_cols=435 Identities=12% Similarity=0.092 Sum_probs=236.3
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.+.+...+++.+.... +.+-...|+...--.+...|+-++|......-++ ++..+.+.|..+--.+-...++++|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr----~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR----NDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhc----cCcccchhHHHHHHHHhhhhhHHHH
Confidence 4555566666666555 2222222333222234556777777776655433 4445667777776666666777777
Q ss_pred HHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh
Q 003016 248 LRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP 326 (857)
Q Consensus 248 ~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~ 326 (857)
++.|..... +.| |...|--+--.-++.|+++.......+..+. .......|..+..++.-
T Consensus 95 iKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----------------~~~~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 95 IKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----------------RPSQRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----------------hhhhHHHHHHHHHHHHH
Confidence 777777665 234 3455555555556667777666666666553 23355667777777777
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003016 327 SHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 405 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~ 405 (857)
.|+...|..+.++..+.. -.|+...|.-.... ---.....+.|..+.|.+.+..-... ++-....--+....
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~------Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELL------LYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH------HHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHH
Confidence 777777777777776654 24555554211100 01112234556666666655443322 11111112233445
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH-cC-CCHHHHHHHHHHHhhCC----CC---------------
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM-DG-GHIDDCISIFQHMKDHC----EP--------------- 464 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~-~~-g~~~~A~~if~~m~~~~----~p--------------- 464 (857)
+.+.+++++|..++..+.. ..||..-|.-.+..+. +. +..+....+|....+.. .|
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~---rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~ 305 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLE---RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKE 305 (700)
T ss_pred HHHHhhHHhHHHHHHHHHh---hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHH
Confidence 5666777777777766655 1355554443333222 22 22222224443333210 00
Q ss_pred -------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC--CCCCCCCCCHhHhh--hhHHHHHhc
Q 003016 465 -------------NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS--GDGAPLKPDEYTYS--SMLEASATA 527 (857)
Q Consensus 465 -------------~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~--~~~~~~~pd~~t~~--~ll~a~~~~ 527 (857)
-+.++..+...|-.-...+--.++.-.+.. +.++-..+. ..+..-.|....|+ .+...+-+.
T Consensus 306 ~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~-~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 306 IVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQH-SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHh-hcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 011222233333222211111111112211 100000111 11112356666555 466778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 528 HQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
|+++.|+...+..+. ..|+.+ .|..=...+.+.|.+++|..++++..+.+ .||...-+--..-..++++.++|.++
T Consensus 385 g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 385 GDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred ccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHH
Confidence 999999999998874 567754 55555577899999999999999988764 35555544555667788999999999
Q ss_pred HHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHH
Q 003016 607 INAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNA 644 (857)
Q Consensus 607 ~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~ 644 (857)
....-..|. ...+.|-..-+.|-.++.++...++
T Consensus 462 ~skFTr~~~----~~~~~L~~mqcmWf~~E~g~ay~r~ 495 (700)
T KOG1156|consen 462 LSKFTREGF----GAVNNLAEMQCMWFQLEDGEAYLRQ 495 (700)
T ss_pred HHHhhhccc----chhhhHHHhhhHHHhHhhhHHHHHH
Confidence 988877775 3444455555566666666555543
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.66 E-value=1.2e-05 Score=90.89 Aligned_cols=252 Identities=14% Similarity=0.132 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCC---CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHHc-----CCCC
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR---DLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLED-----CNLY 261 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~-~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~gi~ 261 (857)
.++..+...|...|+++.|..++++.++.-.+. ..|.+ ...+.+-..|...+++++|..+|.++..- +...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 366778899999999999999999987652111 12222 23444667888999999999999988652 1122
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHH
Q 003016 262 PD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV-YNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 262 pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t-~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
|. ..+++.|..+|.+.|++++|..++++... .+.++. ....|.+.+ ++.+...|+..+.+++|..++..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------I~~~~~-~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~ 350 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------IYEKLL-GASHPEVAAQLSELAAILQSMNEYEEAKKLLQK 350 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------HHHHhh-ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 32 45788888899999999999888877643 222211 113444443 55677778999999999999987
Q ss_pred HHHc---CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-------CCCCHHHHHHHHHHHHHC
Q 003016 340 LRKS---GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG-------VVGTASVYYELACCLCNN 409 (857)
Q Consensus 340 m~~~---g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-------~~~d~~t~~~lI~~~~~~ 409 (857)
..+. -+.++.+.. ..+++.|-..|-+.|++++|+++|++...+. ..-....++.|...|.+.
T Consensus 351 al~i~~~~~g~~~~~~--------a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 351 ALKIYLDAPGEDNVNL--------AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHhhccccchHH--------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 7542 233343221 2335889999999999999999998765431 112234466777777888
Q ss_pred CCHHHHHHHHHHHHhc---CC-CCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 410 GRWQDAMLVVEKIKSL---RH-SKPL-EITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~---~g-~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
++.++|..+|.+-... .| ..|+ ..+|..|...|...|+++.|.++.+...
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 8888777777654320 11 1122 2345555555555555555555554443
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.66 E-value=7.2e-06 Score=92.60 Aligned_cols=246 Identities=16% Similarity=0.134 Sum_probs=185.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHc----CC-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhh
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLED----CN-LYPDIAAY-HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~g-i~pd~~t~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~ 302 (857)
.+...|..+|...|+++.|..+|....+. .| ..|.+.+- +.+...|...+++++|..+|+++... +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------~ 271 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------R 271 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--------H
Confidence 55556999999999999999999887652 12 13444433 34667888999999999999998753 3
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-----G-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 303 ~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
..+|....+.-..+++.|-..|.+.|++++|...++...+- | ..|.+.+. .+.+...|+..+.
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-----------l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ-----------LSELAAILQSMNE 340 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH-----------HHHHHHHHHHhcc
Confidence 55555555556677888888999999999999888877532 2 22333333 4788889999999
Q ss_pred HHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCCc-HHHHHHHHHHHH
Q 003016 377 INEAVAAVRNMEQR-------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKPL-EITFTGLIISSM 443 (857)
Q Consensus 377 ~~~A~~lf~~m~~~-------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~pd-~~t~~~ll~a~~ 443 (857)
+++|..+++...+. ..+.-..+++.|...|.+.|++++|.++|++..... +..+. ...++.|-..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 99999998865321 112235679999999999999999999999876521 11222 345788889999
Q ss_pred cCCCHHHHHHHHHHHhh-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 444 DGGHIDDCISIFQHMKD-----H-CEPN-IGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~-----~-~~p~-~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
+.+..++|.++|.+... | ..|+ ..+|..|...|.+.|+++.|.++-+...
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999887543 2 3334 5789999999999999999999988765
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.65 E-value=0.0013 Score=73.71 Aligned_cols=274 Identities=12% Similarity=0.088 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
..|...+..+...|++..-+..|+..+..-+. .....+|.-.+......|-++-+.+++++-.+ -++..-+--
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv--tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eey 175 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPV--TQHDRIWDLYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEY 175 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCch--HhhccchHHHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHH
Confidence 35666677778889999999999988764321 12346899999999999999999999999987 456667888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG---VFWVFKQLRKSGLKP 347 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~---A~~l~~~m~~~g~~p 347 (857)
|.-++..+++++|.+.+........+ .....+.+...|+-+-...++.-+.-. +..+++.+.. .-+
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f---------~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rft 244 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEF---------VSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFT 244 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhh---------hhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCc
Confidence 99999999999999999887654300 001134456667766665555443332 2233333332 345
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH--------------
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ-------------- 413 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~-------------- 413 (857)
|..-+ .|++|.+-|.+.|.++.|..+|++-.+.- .+..-++.+.++|++-....
T Consensus 245 Dq~g~----------Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n 312 (835)
T KOG2047|consen 245 DQLGF----------LWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGN 312 (835)
T ss_pred HHHHH----------HHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 65544 58999999999999999999998866542 22223555555555432211
Q ss_pred --------HHHHHHHHHHhcCCCC----------CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC------HHHH
Q 003016 414 --------DAMLVVEKIKSLRHSK----------PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN------IGTV 469 (857)
Q Consensus 414 --------~A~~l~~~m~~~~g~~----------pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~------~~~~ 469 (857)
-.+.-|+.+.....+- -++.+|..-+. ...|+..+-...+.+..+.+.|- ...|
T Consensus 313 ~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw 390 (835)
T KOG2047|consen 313 EEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLW 390 (835)
T ss_pred hhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHH
Confidence 1122222222211000 01111111111 12456666677777766643332 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+.+.|-.+|+++.|..+|++....+
T Consensus 391 ~~faklYe~~~~l~~aRvifeka~~V~ 417 (835)
T KOG2047|consen 391 VEFAKLYENNGDLDDARVIFEKATKVP 417 (835)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhcCC
Confidence 888888888888888888888876543
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=0.00011 Score=76.26 Aligned_cols=418 Identities=10% Similarity=0.083 Sum_probs=196.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKG-LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a-~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
+.+..+.++..|..+++--...+- -.....+..|.- +-..|++++|..++..+... ..++..++-.|.-.+.-.
T Consensus 30 edfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~----~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK----DDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc----CCCCcccchhHHHHHHHH
Confidence 444555666666666665443331 122234444433 34568888888888776542 223444555555555555
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---------------hhhhhhhhhcC
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS---------------KRIKNMHRKNW 306 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------~~l~~m~~k~f 306 (857)
|.+.+|..+-...++ ++..-..|+..-.+.++-++...+.+.+...-. ...++.|.++.
T Consensus 105 g~Y~eA~~~~~ka~k------~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 105 GQYIEAKSIAEKAPK------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHHhhCCC------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665444322 122222222222233333333332222221100 00122222222
Q ss_pred CCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH------HhHHHH-------------
Q 003016 307 DPVLEPDLVVYNAVLNA-CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYR------RCLLKV------------- 366 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~------~~~~~~------------- 366 (857)
. -.|+-...|.-+.. |.+..-++-+.++++--.+. -||... ..=+.+|. ..+-..
T Consensus 179 ~--dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSti-A~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 179 Q--DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTI-AKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred h--cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHH-HHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 1 24555566654444 56677777777777766654 344322 22222332 000000
Q ss_pred -HHHHHHHc-----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-----HHH
Q 003016 367 -LVRAFWEE-----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-----ITF 435 (857)
Q Consensus 367 -Li~~y~k~-----g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~ 435 (857)
.+.-.++. .+-+.|++++-.+.+ +.|.+ --.+|--|.+.++.++|..+.+++ ....|-. +++
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl---~PttP~EyilKgvv~ 326 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEA--RLNLIIYYLNQNDVQEAISLCKDL---DPTTPYEYILKGVVF 326 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHh--hhhheeeecccccHHHHHHHHhhc---CCCChHHHHHHHHHH
Confidence 11111111 111233333322211 12222 222444566777777777766554 3344543 345
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKD-HCEPN-IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD 513 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd 513 (857)
.++-+-......+.-|.+.|+-.-. +..-| +.--.+|.+.+.-.-++++.+-.++.+..-- ..-|
T Consensus 327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-------------~NdD 393 (557)
T KOG3785|consen 327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-------------TNDD 393 (557)
T ss_pred HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cCcc
Confidence 5555555555566666666665544 22222 2223445555555556667666666665543 2233
Q ss_pred HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 003016 514 EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL-VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEM-L 591 (857)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll-~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~l-i 591 (857)
...| .+..|.+..|++.+|+++|-.+....+ -|..+|-+++ .+|.++++.+.|+.++-.+.. ..+..+.-.+ .
T Consensus 394 ~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIA 468 (557)
T KOG3785|consen 394 DFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIA 468 (557)
T ss_pred hhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHH
Confidence 3333 345666667777777777755443222 2344554433 445677777777666544422 1222222222 3
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCccCHHHHH
Q 003016 592 IQAIVQSNYEKAVALINAMAYAPFHITERQWT 623 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~ 623 (857)
.-|.+.+.+=-|-+.|+.+. -..|++.-|.
T Consensus 469 n~CYk~~eFyyaaKAFd~lE--~lDP~pEnWe 498 (557)
T KOG3785|consen 469 NDCYKANEFYYAAKAFDELE--ILDPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHhhhHHH--ccCCCccccC
Confidence 35666666666666666554 2345555553
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=5e-05 Score=83.60 Aligned_cols=290 Identities=16% Similarity=0.082 Sum_probs=214.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 260 LYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 260 i~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...+....-.-..-+-..+++.+..++++...+. .+++...+..-|.++...|+..+-..+=..
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----------------dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~ 303 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEK----------------DPFHLPCLPLHIACLYELGKSNKLFLLSHK 303 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----------------CCCCcchHHHHHHHHHHhcccchHHHHHHH
Confidence 3455666666667777889999999999998776 456666777778888888988887777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003016 340 LRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419 (857)
Q Consensus 340 m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~ 419 (857)
|++. -|+... +|-++.--|.-.|+..+|++.|.+...-+..- ...|-.....|+-.|..++|+.-|
T Consensus 304 LV~~--yP~~a~-----------sW~aVg~YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY 369 (611)
T KOG1173|consen 304 LVDL--YPSKAL-----------SWFAVGCYYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAY 369 (611)
T ss_pred HHHh--CCCCCc-----------chhhHHHHHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHH
Confidence 8765 344322 24677777778899999999999876544332 235999999999999999999888
Q ss_pred HHHHhc-CCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 420 EKIKSL-RHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497 (857)
Q Consensus 420 ~~m~~~-~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~ 497 (857)
...-+. .|. .| .-| +-.-|.+.++++.|.++|.+...-++.|+...+-+--.....+.+.+|..+|......-
T Consensus 370 ~tAarl~~G~hlP--~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i- 444 (611)
T KOG1173|consen 370 FTAARLMPGCHLP--SLY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI- 444 (611)
T ss_pred HHHHHhccCCcch--HHH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh-
Confidence 765541 121 22 222 33357888999999999999988788889999988888888999999999999876321
Q ss_pred CCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 498 SGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 498 ~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
........-...+++.|-.+|.+.+.+++|+..|++.+.. .+-|..+|.++--.|...|+++.|.+.|+...-
T Consensus 445 ------k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 445 ------KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred ------hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 0000001124557888888899999999999999988764 345677888888888899999999999987654
Q ss_pred CCCCCCHHHHHHHHHH
Q 003016 578 AGEIPHPLFFTEMLIQ 593 (857)
Q Consensus 578 ~gi~p~~~~~~~li~~ 593 (857)
+.|+..+-..++..
T Consensus 518 --l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 518 --LKPDNIFISELLKL 531 (611)
T ss_pred --cCCccHHHHHHHHH
Confidence 67776666666553
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.0033 Score=70.77 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHH
Q 003016 194 LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT 273 (857)
Q Consensus 194 ~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~ 273 (857)
-.+++.| ..+.+..+++..+.+++..+ ..++ +....---+...|+-++|....+.-.. +-..+.+.|+.+.-.
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k~~--eHge--slAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKKFP--EHGE--SLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHhCC--ccch--hHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHH
Confidence 3344444 34667777888777776321 1222 322222234556899999988877765 345678999999999
Q ss_pred HHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (857)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (857)
+-...++++|++.|......+ +-|...|.-+--.-++.++++.....-..+.+. .|....+
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~----------------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~- 145 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE----------------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRAS- 145 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC----------------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHH-
Confidence 999999999999999998753 445666665555556788888888877777764 5666555
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCCHHHHHHHH------HHHHHCCCHHHHHHHHHHHHhcC
Q 003016 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG-VVGTASVYYELA------CCLCNNGRWQDAMLVVEKIKSLR 426 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-~~~d~~t~~~lI------~~~~~~g~~~~A~~l~~~m~~~~ 426 (857)
|..+..++.-.|+...|..+.++..... -.|+...|.-.. ....+.|..++|++.+..-+.
T Consensus 146 ----------w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-- 213 (700)
T KOG1156|consen 146 ----------WIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-- 213 (700)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--
Confidence 7888888999999999999999887654 356655555443 345667888888887765543
Q ss_pred CCCCcHHHH-HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 003016 427 HSKPLEITF-TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK-ELFEETTRA 495 (857)
Q Consensus 427 g~~pd~~t~-~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~lf~~M~~~ 495 (857)
...|...| -.-..-+.+.+++++|..++..+....+-+...|--+..++.+--+.-++. .+|....+.
T Consensus 214 -~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 214 -QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred -HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 22333332 334456788999999999999998855445555555566665444444444 666666543
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.3e-05 Score=82.35 Aligned_cols=286 Identities=12% Similarity=0.062 Sum_probs=215.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
-+......-..-|-..+++++..++.+.+... ++++...+..=|..+...|+..+-..+=.+|.+. .+-...||
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~----dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW 315 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEK----DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSW 315 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh----CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcch
Confidence 34444455555566778899999999888763 4445566777777888888888777777777774 34457899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
-++.--|--.|...+|.+.|.+..... ..=...|-.....|+-.|..+.|...+...-+.=...
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD----------------~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~ 379 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLD----------------PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC 379 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcC----------------ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC
Confidence 999888888899999999998876543 2234578888888888999999888877765532111
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL-- 425 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-- 425 (857)
...++ -+---|.+.+++.-|.+.|.+..... +.|....+-+....-+.+.+.+|..+|......
T Consensus 380 hlP~L-------------Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 380 HLPSL-------------YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred cchHH-------------HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 11111 13335777899999999998876543 235667787777777788999999999877631
Q ss_pred --CCCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Q 003016 426 --RHSK-PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 502 (857)
Q Consensus 426 --~g~~-pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~ 502 (857)
..-. --..+++.|-.+|.+++.+++|...|+....-.+.+..++.++.-.|...|+++.|.+.|.+...
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~-------- 517 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA-------- 517 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--------
Confidence 0111 13456888999999999999999999999988889999999999999999999999999999887
Q ss_pred cCCCCCCCCCCHhHhhhhHHHH
Q 003016 503 LSGDGAPLKPDEYTYSSMLEAS 524 (857)
Q Consensus 503 ~~~~~~~~~pd~~t~~~ll~a~ 524 (857)
+.||..+-..++..+
T Consensus 518 -------l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 518 -------LKPDNIFISELLKLA 532 (611)
T ss_pred -------cCCccHHHHHHHHHH
Confidence 669988887777743
No 71
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00025 Score=76.84 Aligned_cols=391 Identities=14% Similarity=0.049 Sum_probs=235.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCcCCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHH
Q 003016 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKS-RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLG 275 (857)
Q Consensus 198 ~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~ 275 (857)
.-|-+.|.+++|++.+.+.+... || .+-|...-.+|...|+++...+.-....+ +.|+ +-.+..-.+++-
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~-----p~epiFYsNraAcY~~lgd~~~Vied~TkALE---l~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC-----PDEPIFYSNRAACYESLGDWEKVIEDCTKALE---LNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC-----CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh---cCcHHHHHHHHHHHHHH
Confidence 45667899999999999998643 34 67788888999999999998887777765 3465 446666677888
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHH--------HHHHHH-c--C
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWV--------FKQLRK-S--G 344 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l--------~~~m~~-~--g 344 (857)
..|++++|+.=..-. +++.++....-.-.+.++ .++-.+ . -
T Consensus 195 ~lg~~~eal~D~tv~----------------------------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p 246 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL----------------------------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPP 246 (606)
T ss_pred hhccHHHHHHhhhHH----------------------------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 888888775432211 111111111111111111 111111 1 1
Q ss_pred CCCCHHHHHHHHHHHH-----------HhHHHHHHHHH----HHc-CCHHHHHHHHHHHhh---cCCCC---CHHHHHHH
Q 003016 345 LKPSAATYGLAMESYR-----------RCLLKVLVRAF----WEE-GKINEAVAAVRNMEQ---RGVVG---TASVYYEL 402 (857)
Q Consensus 345 ~~pd~~t~~~ll~~~~-----------~~~~~~Li~~y----~k~-g~~~~A~~lf~~m~~---~~~~~---d~~t~~~l 402 (857)
+-|......+.+..|. .-+...+..++ ... ..+..|...+.+-.. ..... |... --|
T Consensus 247 ~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~ 325 (606)
T KOG0547|consen 247 VLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYM 325 (606)
T ss_pred CCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHH
Confidence 2233332222222222 00111111111 110 112222222222110 00000 1111 111
Q ss_pred HH-------HHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 403 AC-------CLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 403 I~-------~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
.. -+.-.|+.-.|...|+..... .-.++. .|--+-.+|....+-++....|+...+--+-|..+|..--.+
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l-~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm 403 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKL-DPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM 403 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhc-Ccccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH
Confidence 11 233457888888888888762 222222 266666788999999999999999887444566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
+.-.+++++|..=|++.+. +.| +...|..+--+..+.+.+++++..|++.++. ++--+.+|+.
T Consensus 404 ~flL~q~e~A~aDF~Kai~---------------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~ 467 (606)
T KOG0547|consen 404 RFLLQQYEEAIADFQKAIS---------------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNL 467 (606)
T ss_pred HHHHHHHHHHHHHHHHHhh---------------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHH
Confidence 7778889999999999887 446 4566777766777788999999999998873 5555678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH-HHHHHHH
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEA-----GEIPHPLF--FTEMLIQAIVQSNYEKAVALINAMAYAPFHITE-RQWTELF 626 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~-----gi~p~~~~--~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll 626 (857)
....+...++++.|.+.|+...+. ++..++.. --.++-.- =.+++..|++++++..+ +.|-. ..+.+|-
T Consensus 468 fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tla 544 (606)
T KOG0547|consen 468 FAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLA 544 (606)
T ss_pred HHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHH
Confidence 888899999999999999987653 22222221 12222221 23888999999988753 33433 4677777
Q ss_pred HHhhhccCHHHHHHHHHHHH
Q 003016 627 ESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 627 ~a~~~~g~~e~~~~l~~~m~ 646 (857)
.--...|+.++|.++++.-.
T Consensus 545 q~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 545 QFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 77778888888888886554
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=9e-06 Score=83.29 Aligned_cols=231 Identities=11% Similarity=0.127 Sum_probs=183.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
-+-+-..|.+.|.+.+|.+.|..-.++ .|-+.||-.|-..|.+..+...|+.+|.+-...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----------------- 285 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----------------- 285 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----------------
Confidence 366788899999999999999988775 488889999999999999999999999988763
Q ss_pred CCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 311 EPDLVVYN-AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 311 ~pd~~t~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
.|-.+||- -+-+.+-..++.++|.++++...+.. ..++... ..+...|.-.++.+-|++.+.++.+
T Consensus 286 fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEai------------Acia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 286 FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAI------------ACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceee------------eeeeeccccCCChHHHHHHHHHHHH
Confidence 45555554 45566778899999999999988753 1122222 4556677788999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHH
Q 003016 390 RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI--TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIG 467 (857)
Q Consensus 390 ~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~ 467 (857)
.|+. +...|+.+.-+|...+++|-++.-|.+... .-..|+.. +|-.+-......|++..|.+.|+-...+-..+..
T Consensus 353 mG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 353 MGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred hcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 9976 445577777788888999999999988877 33445543 4555555666789999999999998886667788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|.|.-.-.+.|++++|..++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887643
No 73
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=8.6e-06 Score=83.43 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=112.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH-HHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF-TGLIISSM 443 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~a~~ 443 (857)
+-+-.+|.+.|...+|.+.|+.-...-. -..||-.|-.+|.+..++..|+.+|.+-.+ ..|-.+|| ..+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhhhhhHHHHH
Confidence 4455555566666666666555444322 223455555556666666666666555443 12333332 33444444
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
..++.++|.++++...+..+.++....++..+|.-.++++-|+..++++...| + -+...|+.+--+
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-------------~-~speLf~NigLC 367 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-------------A-QSPELFCNIGLC 367 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-------------C-CChHHHhhHHHH
Confidence 45555555555555555334455555555555555555555555555555554 1 233445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLDQT--KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYE 601 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd~~--t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~ 601 (857)
|.-.++++.++.-|.+....--.|+.. +|..+-......|++..|.+.|+.....+ .-+...++.|--.-.+.|+++
T Consensus 368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~ 446 (478)
T KOG1129|consen 368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL 446 (478)
T ss_pred HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence 555555555555555554433333322 33333333344455555555555544432 113344555544445555555
Q ss_pred HHHHHHHHh
Q 003016 602 KAVALINAM 610 (857)
Q Consensus 602 ~A~~l~~~M 610 (857)
+|..+++..
T Consensus 447 ~Arsll~~A 455 (478)
T KOG1129|consen 447 GARSLLNAA 455 (478)
T ss_pred HHHHHHHHh
Confidence 555555543
No 74
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00062 Score=70.83 Aligned_cols=378 Identities=11% Similarity=0.074 Sum_probs=216.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
+.-+...+++..|+.+++.-...+.. ...++.. .+...|.+.|++++|..++.-+.++ -.|+...|..|.-++.-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~l--Wia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQL--WIAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHH--HHHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHH
Confidence 45566678999999999876533221 1112233 3556778899999999999988763 35788888888888888
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|.+.+|..+-... ..++..-..|+...-+.++-++-..++..+...- -|.
T Consensus 104 Lg~Y~eA~~~~~ka--------------------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~--Edq------- 154 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKA--------------------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL--EDQ------- 154 (557)
T ss_pred HHHHHHHHHHHhhC--------------------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH--HHH-------
Confidence 89999998876543 3344445556666667788888777777775431 122
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHH-HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYY-ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~-~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
-+|..+.-..-.+++|..++.+....+.. -...| -|.-+|.+..-++-+.++++-..+ .++-+.+..
T Consensus 155 --------LSLAsvhYmR~HYQeAIdvYkrvL~dn~e--y~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdStiA~ 222 (557)
T KOG3785|consen 155 --------LSLASVHYMRMHYQEAIDVYKRVLQDNPE--YIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDSTIAK 222 (557)
T ss_pred --------HhHHHHHHHHHHHHHHHHHHHHHHhcChh--hhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcHHHH
Confidence 23444444445778888888887755422 11122 244567788888888888877765 222223333
Q ss_pred HHHHHHHHc--CCCH---------------------------------HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 003016 436 TGLIISSMD--GGHI---------------------------------DDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 436 ~~ll~a~~~--~g~~---------------------------------~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g 480 (857)
|....-..+ .|+. +.|.+++-.+.+. -...--.|+--|.+.+
T Consensus 223 NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeecccc
Confidence 322221111 1111 1222222222211 1122234555678889
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHH-H----hcCCHHHHHHHHHHHHHcCCCCCHHHH-HH
Q 003016 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS-A----TAHQWEYFEYVYKGMALSGCQLDQTKH-AW 554 (857)
Q Consensus 481 ~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~-~----~~g~~~~a~~l~~~m~~~g~~pd~~t~-~~ 554 (857)
++.+|..+.+++.- ..|-.+....+..+- . ....+.-|.+.|+..-.++..-|...- -+
T Consensus 300 dVqeA~~L~Kdl~P---------------ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 300 DVQEAISLCKDLDP---------------TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred cHHHHHHHHhhcCC---------------CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 99999988887642 345444444433321 1 112356677777665555555443322 22
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHh-hhcc
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESN-EDRI 633 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~-~~~g 633 (857)
+...+.-.-++++..-+++.+..--..-|...|| +..+.+..|++.+|.++|-+.....+ -|..+|.+++..| .+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC
Confidence 3333344456777777777776543333334443 55667777777777777766543222 3445665555544 4445
Q ss_pred CHHHHHH
Q 003016 634 SRDKLEK 640 (857)
Q Consensus 634 ~~e~~~~ 640 (857)
..+.|-.
T Consensus 443 kP~lAW~ 449 (557)
T KOG3785|consen 443 KPQLAWD 449 (557)
T ss_pred CchHHHH
Confidence 5555433
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.47 E-value=0.00015 Score=78.15 Aligned_cols=95 Identities=12% Similarity=-0.041 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.|..+-..|.+.|+.+.|...|++..+. -+.+...|+.+...+...|++++|...|++..+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--------------- 128 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--------------- 128 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------
Confidence 3444444555555555555555555441 11234455555555555555555555555554421
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+-+..+|..+..++...|++++|.+.|+...+
T Consensus 129 -P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 129 -PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11334444444445555555555555555544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.42 E-value=0.0014 Score=72.67 Aligned_cols=203 Identities=15% Similarity=0.100 Sum_probs=122.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~-t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
....|..+...|...|+++.|.+.+........-.++.. ........+...|++++|..++++.....
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----------- 73 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY----------- 73 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----------
Confidence 345566666667777777777666666554211112221 12222345567788888888888876642
Q ss_pred CCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~ 381 (857)
+.|...++. ...+.. .+....+.+.+.. .....|+.... ...+...+...|++++|.
T Consensus 74 -----P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~-----------~~~~a~~~~~~G~~~~A~ 134 (355)
T cd05804 74 -----PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYL-----------LGMLAFGLEEAGQYDRAE 134 (355)
T ss_pred -----CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHH-----------HHHHHHHHHHcCCHHHHH
Confidence 334444442 222222 3444444444443 12233443322 245556777888888888
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE--ITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 382 ~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
..+++..+.... +...+..+...|...|++++|...+.+........|+. ..|..+...+...|+.++|..+++...
T Consensus 135 ~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 135 EAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 888888776532 34557777888888888888888888776522112332 235567777888888888888888875
Q ss_pred h
Q 003016 460 D 460 (857)
Q Consensus 460 ~ 460 (857)
.
T Consensus 214 ~ 214 (355)
T cd05804 214 A 214 (355)
T ss_pred c
Confidence 4
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.40 E-value=0.00027 Score=76.16 Aligned_cols=215 Identities=16% Similarity=0.020 Sum_probs=146.9
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 169 EMTAKNWKFVRIMNQSG-LMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 169 ~~~~~A~~l~~~M~~~g-~~p~--~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
+..+.++.-+.++.... ..|+ ...|..+-..+...|+.+.|...|...++.. +.+..+|+.+-..|...|+++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR----PDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHCCCHH
Confidence 44556666666666432 2232 2346666777889999999999999998753 337889999999999999999
Q ss_pred HHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHH
Q 003016 246 EALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC 324 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~ 324 (857)
.|...|+...+. .| +..+|..+..++...|++++|.+.|+...+.. |+..........+
T Consensus 116 ~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----------------P~~~~~~~~~~l~ 175 (296)
T PRK11189 116 AAYEAFDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----------------PNDPYRALWLYLA 175 (296)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHH
Confidence 999999999872 35 47788889999999999999999999988743 4332222222234
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh---cCCC--C-CHHH
Q 003016 325 VPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ---RGVV--G-TASV 398 (857)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~--~-d~~t 398 (857)
...++.++|...|....... .|+... ..+... ..|+...+ ..|..+.+ ..+. | ....
T Consensus 176 ~~~~~~~~A~~~l~~~~~~~-~~~~~~-------------~~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea 238 (296)
T PRK11189 176 ESKLDPKQAKENLKQRYEKL-DKEQWG-------------WNIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCET 238 (296)
T ss_pred HccCCHHHHHHHHHHHHhhC-CccccH-------------HHHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHH
Confidence 55778999999997765432 333221 122222 34454443 24444432 1111 1 2346
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
|..+...+.+.|++++|...|++...
T Consensus 239 ~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 239 YFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788888888888888888888876
No 78
>PF12854 PPR_1: PPR repeat
Probab=98.36 E-value=4.9e-07 Score=62.31 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 259 NLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (857)
Q Consensus 259 gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 290 (857)
|+.||.+|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.0013 Score=69.97 Aligned_cols=291 Identities=12% Similarity=0.042 Sum_probs=170.8
Q ss_pred HHHHHHc--CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 235 LAILGKA--GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 235 i~~y~k~--g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
|.+|+.+ ++-..|...|-......-++-|+.....+...+...|+.++|...|+..+. ..|
T Consensus 201 ika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~-----------------~dp 263 (564)
T KOG1174|consen 201 IKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC-----------------ANP 263 (564)
T ss_pred HHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh-----------------CCh
Confidence 4444443 333333333333333223444666677777777777777777777777654 334
Q ss_pred CHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 313 DLVV----YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 313 d~~t----~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.++ |..| +.+.|+++....+...+....-. .... |-.-........++..|+.+-++-.
T Consensus 264 y~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~~~-ta~~------------wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 264 DNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKVKY-TASH------------WFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred hhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhhhc-chhh------------hhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 3322 2222 34566666666666665433100 0000 1112222334566777777666655
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHH
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 468 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~ 468 (857)
+.+... ...|-.=...+.+.|+.++|.--|+..+.. -+-+..+|..|+..|...|.+.+|.-.-....+-+..+..+
T Consensus 328 ~~~~r~-~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~ 404 (564)
T KOG1174|consen 328 DSEPRN-HEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARS 404 (564)
T ss_pred ccCccc-chHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhh
Confidence 433221 112333334566778888888888776541 12355678888888888888888776655554433345555
Q ss_pred HHHHH-HHHHh-cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 469 VNAML-KVYSR-NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 469 ~~~li-~~~~~-~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
.+.+- ..+.- ...-++|.++++.-.+ +.|+-. ..+.+..-|...|..+.+..+++.... .
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~---------------~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~ 467 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLK---------------INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--I 467 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhc---------------cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--h
Confidence 44442 22221 2234788888888776 447653 344455567777888888888887765 5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 546 ~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
.||...++.|-+.+.....+.+|++.|......
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 788888888888888888888888888877663
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=0.0024 Score=70.79 Aligned_cols=308 Identities=12% Similarity=0.024 Sum_probs=163.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR-FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~-~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
+..+...+...|+.+.+.+.+....+..... .+. .........+...|+++.|..++++..+. .+.|...++. .
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~ 83 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAAR--ATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-h
Confidence 3333344444566666555555544332221 121 22222233456678888888888887663 2234444442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 272 VTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD-LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 272 ~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
..+.. .+....+.+.+.. ..+ ..|+ ......+...+...|++++|...+++..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~--~~~---------------~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 144 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL--WAP---------------ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-- 144 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc--cCc---------------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 22222 3444444444443 111 2333 3344455566778888888888888887753
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTA--SVYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d~--~t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
|+.... +..+...|...|++++|...+++...... .++. ..|..+...+...|++++|..+|++..
T Consensus 145 p~~~~~-----------~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 145 PDDAWA-----------VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCCcHH-----------HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 333221 26777788888888888888887665432 1222 345567778888888888888888875
Q ss_pred hcCCCCCcHHHH-H--HHHHHHHcCCCHHHHHHH---HHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 424 SLRHSKPLEITF-T--GLIISSMDGGHIDDCISI---FQHMKDHCEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 424 ~~~g~~pd~~t~-~--~ll~a~~~~g~~~~A~~i---f~~m~~~~~p~--~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
......+..... + .++.-+...|....+.++ ...-....... .........++...|+.+.|..++..+...
T Consensus 214 ~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 214 APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 421111222211 1 333334444544444333 22211111111 122235666778889999999999998764
Q ss_pred CCCCccccCCCCCCCCCCHhHhhhhHH--HHHhcCCHHHHHHHHHHHHH
Q 003016 496 NSSGYTFLSGDGAPLKPDEYTYSSMLE--ASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 496 g~~~~~~~~~~~~~~~pd~~t~~~ll~--a~~~~g~~~~a~~l~~~m~~ 542 (857)
... + ...+... ..+-..++. ++...|+.+.|.+.+.....
T Consensus 294 ~~~----~--~~~~~~~-~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 294 ASS----A--DDNKQPA-RDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred Hhc----c--CchhhhH-HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 300 0 0000100 111122222 34456888888887776554
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.01 Score=69.53 Aligned_cols=427 Identities=15% Similarity=0.170 Sum_probs=248.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH--------HHHHHHH-hCcCC-------
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS-WRQAM--------SVLDWVY-GLKDK------- 222 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~-~~~A~--------~l~~~~~-~~~~~------- 222 (857)
.|+....++++..--+-+++.....|. -+..+++++.+.|....+ ++.-+ .+.+... ++.+.
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 344445566666666677788888885 588999988887765532 22211 1111111 11000
Q ss_pred CCCCC---------HHHHHHHHHHHHHcCChh-----------HHHHHHHHhHHcCCC--CCCHHHHHHHHHHHHhcCCH
Q 003016 223 RDLKS---------RFVYTKLLAILGKAGRPH-----------EALRIFNLMLEDCNL--YPDIAAYHSVAVTLGQVGLL 280 (857)
Q Consensus 223 ~~~~~---------~~~~n~Li~~y~k~g~~~-----------~A~~vf~~m~~~~gi--~pd~~t~~~li~~~~~~g~~ 280 (857)
.+.-| ...|-.+..-+.+..+++ .-+.+.++.... ++ ..|+..-...+.++...+..
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~t-al~E~~dPe~vS~tVkAfMtadLp 1000 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQT-ALPETQDPEEVSVTVKAFMTADLP 1000 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHh-cCCccCChHHHHHHHHHHHhcCCc
Confidence 00001 112222333333333322 234566766552 32 24677777888999999999
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHH---------------------------HHhcCChHHH
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA---------------------------CVPSHQWKGV 333 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~---------------------------~~~~g~~~~A 333 (857)
.+..++++++.-.++. +.-+...-|.+|-. +...+-+++|
T Consensus 1001 ~eLIELLEKIvL~~S~-------------Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 1001 NELIELLEKIVLDNSV-------------FSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEA 1067 (1666)
T ss_pred HHHHHHHHHHhcCCcc-------------cccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHH
Confidence 9999999999765411 11122222223222 2233334444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 334 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
+.+|+..-. +.... +.||. .-+.++.|.+.-++.. ...+|+.+..+-.+.|...
T Consensus 1068 F~ifkkf~~-----n~~A~------------~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1068 FAIFKKFDM-----NVSAI------------QVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHHhcc-----cHHHH------------HHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchH
Confidence 444443211 11111 23332 2344555555444432 2345888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M 492 (857)
+|++-|-+. -|...|.-+++.+.+.|.+++-.+.+....+ .-.|.+ =+.||-+|++.+++.+-.++.
T Consensus 1122 dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1122 DAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh---
Confidence 888766432 4566788899999999999998888876665 333444 367888999999888776665
Q ss_pred HHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 493 TRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572 (857)
Q Consensus 493 ~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~ 572 (857)
.-||......+-.-|...|.++.|.-+|.. ...|..|...+.+.|.+..|...-
T Consensus 1190 -----------------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1190 -----------------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred -----------------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 338888888888888888888888877763 345666666677777776666554
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCC
Q 003016 573 DSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAAS 652 (857)
Q Consensus 573 ~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p 652 (857)
+.. .+..+|-.+-.+|...+.+.-| +|--..+.....-+.-|+.-|...|-+++...+++.-. |+..
T Consensus 1244 RKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLER 1310 (1666)
T KOG0985|consen 1244 RKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLER 1310 (1666)
T ss_pred hhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhH
Confidence 433 2456677766676665544433 22222334445556666677777777666665554433 4443
Q ss_pred ChhhHHHHHHHHHHHhccCchhhhHh
Q 003016 653 SEITVSNLSRALHALCRSEKERDLSS 678 (857)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~~~~~~ 678 (857)
...++-+-+..+|+....++..+..+
T Consensus 1311 AHMgmfTELaiLYskykp~km~EHl~ 1336 (1666)
T KOG0985|consen 1311 AHMGMFTELAILYSKYKPEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44444444666666666655555554
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.30 E-value=9.6e-07 Score=60.85 Aligned_cols=34 Identities=26% Similarity=0.626 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
.|+.||..|| |+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty------------~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTY------------NTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHH------------HHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4899999998 999999999999999999999994
No 83
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.014 Score=65.18 Aligned_cols=421 Identities=14% Similarity=0.097 Sum_probs=238.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH-
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL- 234 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L- 234 (857)
..+-+=++.....+.+++|+.....+...+ +-+...+..=+-++.+.+.++.|+.+.+.-. -..++|..
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~---------~~~~~~~~~ 82 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG---------ALLVINSFF 82 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---------hhhhcchhh
Confidence 334444566778889999999999998876 4455567777778888999999997765321 11223333
Q ss_pred -HHHHH--HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 235 -LAILG--KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 235 -i~~y~--k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
=.+|| +.+..++|+..++.... -|..+...-...+-+.|++++|+.+|+.+.+.+. ..
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~--------------dd 143 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS--------------DD 143 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--------------ch
Confidence 44555 67899999999984433 2444555666778899999999999999977651 11
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh--
Q 003016 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ-- 389 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~-- 389 (857)
-|...-..++.+-... .+ ..|......| ..+|..+ || ....+...|++.+|+++++...+
T Consensus 144 ~d~~~r~nl~a~~a~l----~~----~~~q~v~~v~-e~syel~--------yN-~Ac~~i~~gky~qA~elL~kA~~~~ 205 (652)
T KOG2376|consen 144 QDEERRANLLAVAAAL----QV----QLLQSVPEVP-EDSYELL--------YN-TACILIENGKYNQAIELLEKALRIC 205 (652)
T ss_pred HHHHHHHHHHHHHHhh----hH----HHHHhccCCC-cchHHHH--------HH-HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1222222222221110 11 1222222333 2233221 12 22345567788888877776611
Q ss_pred ------cCCC-----CCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHc---------
Q 003016 390 ------RGVV-----GTA-SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI----TFTGLIISSMD--------- 444 (857)
Q Consensus 390 ------~~~~-----~d~-~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~a~~~--------- 444 (857)
.+.. ... .+--.|.-++-..|+-++|..+|..... ...+|.. .-|.|+..-..
T Consensus 206 ~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~--~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 206 REKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK--RNPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred HHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH--hcCCCchHHHHHhcchhhhccccccCchHHH
Confidence 1111 000 1122344556677888888888777766 2233321 12222221111
Q ss_pred ------------------------------------CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh--cCCHHHHH
Q 003016 445 ------------------------------------GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR--NDMFSKAK 486 (857)
Q Consensus 445 ------------------------------------~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~--~g~~~~A~ 486 (857)
.+..+.+.++-..... ..|.. .+.+++....+ .....+|.
T Consensus 284 ~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~-~~p~~-~~~~ll~~~t~~~~~~~~ka~ 361 (652)
T KOG2376|consen 284 KSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPG-MSPES-LFPILLQEATKVREKKHKKAI 361 (652)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc-cCchH-HHHHHHHHHHHHHHHHHhhhH
Confidence 1111222222111111 11222 22333333222 22456666
Q ss_pred HHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhhhHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHH
Q 003016 487 ELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSSMLEASATAHQWEYFEYVYK--------GMALSGCQLDQTKHAWLL 556 (857)
Q Consensus 487 ~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~l~~--------~m~~~g~~pd~~t~~~Ll 556 (857)
+++...-... |+. ...-.++.-....|+++.|.+++. ...+.+..|.. ..+++
T Consensus 362 e~L~~~~~~~---------------p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv 424 (652)
T KOG2376|consen 362 ELLLQFADGH---------------PEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIV 424 (652)
T ss_pred HHHHHHhccC---------------CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHH
Confidence 6666655433 433 344455566677899999999998 55555555544 45677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhh
Q 003016 557 VEASRAGKCHLLEHAFDSLLEA--GEIPHP----LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNE 630 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~m~~~--gi~p~~----~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~ 630 (857)
..+.+.++-+-|..++++.... .-.+.. .+|.-+..--.++|+-++|..+++++... ..+|..+...++.+++
T Consensus 425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~ 503 (652)
T KOG2376|consen 425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYA 503 (652)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHH
Confidence 7788888888888888766542 111222 23333344445679999999999998753 3567778888888887
Q ss_pred hccCHHHHHHHHHHHH
Q 003016 631 DRISRDKLEKLLNALC 646 (857)
Q Consensus 631 ~~g~~e~~~~l~~~m~ 646 (857)
. -+++.+..+-+.+.
T Consensus 504 ~-~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 504 R-LDPEKAESLSKKLP 518 (652)
T ss_pred h-cCHHHHHHHhhcCC
Confidence 6 46777777665443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=0.02 Score=65.93 Aligned_cols=383 Identities=13% Similarity=0.064 Sum_probs=205.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.|..+|..|.-+..++|+++.+-+.|++... +..-....|+.+-..|...|.-..|..+++.-....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~----------- 387 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS----------- 387 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc-----------
Confidence 4788899999999999999999999998765 455677889999999999999889999888765542
Q ss_pred CCCCCCCC-HHHHHHHHHHHH-hcCChHHHHHHHHHHHHc--C----CCCCHHHHHHHHHHHH-----------------
Q 003016 306 WDPVLEPD-LVVYNAVLNACV-PSHQWKGVFWVFKQLRKS--G----LKPSAATYGLAMESYR----------------- 360 (857)
Q Consensus 306 f~~~~~pd-~~t~~~li~~~~-~~g~~~~A~~l~~~m~~~--g----~~pd~~t~~~ll~~~~----------------- 360 (857)
..|+ ...+-..-..|. +.+..+++..+-.+.... | +.|-...+-.+-..+.
T Consensus 388 ----~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 388 ----EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred ----cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 2243 333322222233 245555555555554441 1 1111111100000000
Q ss_pred ---------------HhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 361 ---------------RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 361 ---------------~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.+. --|---|+..++++.|.....+...-+-..+...|..+.-.+...+++.+|+.+.+.....
T Consensus 464 lqale~av~~d~~dp~~i-f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVI-FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHHHhcCCCCchHH-HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 000 0122234445556666665555555544445555555555555566666666555544431
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh----------------------C-------CCCCHHHHHHHHHHH
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD----------------------H-------CEPNIGTVNAMLKVY 476 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~----------------------~-------~~p~~~~~~~li~~~ 476 (857)
.|.. ..-...-+..-...++.+++......+.. + ..-.+.++..+....
T Consensus 543 ~~~N--~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 543 FGDN--HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred hhhh--hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 1110 00000000000001111111111111000 0 000011111111111
Q ss_pred HhcC---CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC------HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003016 477 SRND---MFSKAKELFEETTRANSSGYTFLSGDGAPLKPD------EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547 (857)
Q Consensus 477 ~~~g---~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd------~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p 547 (857)
...+ ..+.. |.. . ...-.|+ ...|......+...++.++|...+.+..+ +.|
T Consensus 621 a~~~~~~~se~~------Lp~-----s------~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~ 681 (799)
T KOG4162|consen 621 ASQLKSAGSELK------LPS-----S------TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDP 681 (799)
T ss_pred Hhhhhhcccccc------cCc-----c------cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cch
Confidence 0000 00000 000 0 0012343 34566666778888888888877776654 333
Q ss_pred C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHhhhCCCccCHHHHH
Q 003016 548 D-QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQSNYEKAVA--LINAMAYAPFHITERQWT 623 (857)
Q Consensus 548 d-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g~~~~A~~--l~~~M~~~~~~p~~~~~~ 623 (857)
- ...|.-.-..+...|..++|.+.|...... .| ++.+.+++-..+.+.|+..-|.. ++..+.+-+ .-+...|-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHH
Confidence 3 345555555677889999999999877653 44 34567777778888888777777 888876432 23457888
Q ss_pred HHHHHhhhccCHHHHHHHHHHHHhCCC
Q 003016 624 ELFESNEDRISRDKLEKLLNALCNCNA 650 (857)
Q Consensus 624 ~Ll~a~~~~g~~e~~~~l~~~m~~~g~ 650 (857)
.|-......|+.+.|...+....+..-
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 888888899999999888887776543
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.21 E-value=0.0006 Score=67.47 Aligned_cols=197 Identities=11% Similarity=-0.007 Sum_probs=130.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD- 513 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd- 513 (857)
...|--+|...|+...|..-+++..+.-+.+..+|..+...|-+.|..+.|.+-|++.... .|+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---------------~p~~ 102 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---------------APNN 102 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---------------CCCc
Confidence 4445566777777777777777777765566677777777777777777777777777663 353
Q ss_pred HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003016 514 EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLI 592 (857)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~ 592 (857)
....|.--.-+|..|.+++|.+.|++....=.-+ -..+|..+.-+..+.|+.+.|.++|+...+.. +-.....-.+..
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~ 181 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELAR 181 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHH
Confidence 3445555555677777777777777776542222 23466666666677788888888887776652 112345556667
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 593 QAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
.....|++-.|..+++.....+. ++...+--.+.-....|+.+.+.+.-..+...
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777888888777777766554 77766666666667777777776666655543
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.20 E-value=0.0022 Score=72.25 Aligned_cols=77 Identities=13% Similarity=0.277 Sum_probs=38.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
.+-.....|.+|+.+++.++. .. .-.--|..+.+.|+..|+++.|.++|-+.- .++--|.+|.++|+|+
T Consensus 740 eaai~akew~kai~ildniqd-qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQD-QK--TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhh-hc--cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 333444555566665555544 11 111224444555556666666666554332 2444555666666666
Q ss_pred HHHHHHHH
Q 003016 484 KAKELFEE 491 (857)
Q Consensus 484 ~A~~lf~~ 491 (857)
.|.++-.+
T Consensus 809 da~kla~e 816 (1636)
T KOG3616|consen 809 DAFKLAEE 816 (1636)
T ss_pred HHHHHHHH
Confidence 66555443
No 87
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00068 Score=81.73 Aligned_cols=217 Identities=14% Similarity=0.092 Sum_probs=173.7
Q ss_pred ChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC-----HHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD-----LVV 316 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd-----~~t 316 (857)
.++.|.++-+.++.. || ...|-..|.-..+.++.++|.+++++.... +.+. ...
T Consensus 1440 ~pesaeDferlvrss----PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t----------------IN~REeeEKLNi 1499 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSS----PNSSILWIRYMAFHLELSEIEKARKIAERALKT----------------INFREEEEKLNI 1499 (1710)
T ss_pred CCcCHHHHHHHHhcC----CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----------------CCcchhHHHHHH
Confidence 344555555555543 55 678999999999999999999999998765 2221 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~ 396 (857)
|.++++.-..-|.-+...++|+++.+.- |..+. |..|...|.+.+..++|-++|+.|.++-- -..
T Consensus 1500 WiA~lNlEn~yG~eesl~kVFeRAcqyc---d~~~V-----------~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~ 1564 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYC---DAYTV-----------HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTR 1564 (1710)
T ss_pred HHHHHhHHHhhCcHHHHHHHHHHHHHhc---chHHH-----------HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chh
Confidence 8888888788888888999999998753 44443 58999999999999999999999987632 344
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP--LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p--d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
.+|...+..+.++.+-+.|..++.+... . ++- ......-.+..-.+.|+.+.++.+|+......+.-...|+..|+
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~-~-lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALK-S-LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHh-h-cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 5699999999999999999999998876 2 222 22334555666678999999999999998877778899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 003016 475 VYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+=.++|+.+.+..+|++....+
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999877
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.011 Score=65.41 Aligned_cols=422 Identities=10% Similarity=0.076 Sum_probs=221.9
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 003016 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 230 (857)
...|+++|..|++.+..+ ..+++..++++|... ++-....|..-|+.-....+++...++|.+.+.. ..+...
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-----vLnlDL 88 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-----VLNLDL 88 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----HhhHhH
Confidence 467899999999988777 999999999999854 2345557888899999999999999999988653 236778
Q ss_pred HHHHHHHHHHc-CChhH----HHHHHHHhHHcCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHcCCC
Q 003016 231 YTKLLAILGKA-GRPHE----ALRIFNLMLEDCNLYPDI-AAYHSVAVT---------LGQVGLLKELVKLIERMRQKPS 295 (857)
Q Consensus 231 ~n~Li~~y~k~-g~~~~----A~~vf~~m~~~~gi~pd~-~t~~~li~~---------~~~~g~~~~A~~l~~~m~~~g~ 295 (857)
|..-|+---+. |.... -.+.|+-..+..|+.+-. ..|+.-+.- |..+.+.+...++|.++...+.
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 88777644332 33332 233455555544544432 235554432 4445566778888998887652
Q ss_pred hhhhhhhhhcCCCCCCCCHHHHHHHHHHH-------HhcCChHHHHHHHHHHHH--cCCCCCHHH------HHHHHHHHH
Q 003016 296 KRIKNMHRKNWDPVLEPDLVVYNAVLNAC-------VPSHQWKGVFWVFKQLRK--SGLKPSAAT------YGLAMESYR 360 (857)
Q Consensus 296 ~~l~~m~~k~f~~~~~pd~~t~~~li~~~-------~~~g~~~~A~~l~~~m~~--~g~~pd~~t------~~~ll~~~~ 360 (857)
..+-.|. .|-..|-.=|+.. -+...+..|+++++++.. .|+.-+..+ -..+..
T Consensus 169 ~nlEkLW---------~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q--- 236 (656)
T KOG1914|consen 169 HNLEKLW---------KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ--- 236 (656)
T ss_pred ccHHHHH---------HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH---
Confidence 2222221 0111121111111 123445566666666532 233221111 100000
Q ss_pred HhHHHHHHHHHHHcCCH------H--HHHHHHHH-HhhcCCCCCHHHHHHHHHH-------HHHCC-------CHHHHHH
Q 003016 361 RCLLKVLVRAFWEEGKI------N--EAVAAVRN-MEQRGVVGTASVYYELACC-------LCNNG-------RWQDAML 417 (857)
Q Consensus 361 ~~~~~~Li~~y~k~g~~------~--~A~~lf~~-m~~~~~~~d~~t~~~lI~~-------~~~~g-------~~~~A~~ 417 (857)
...|-.+|.-=-..+-. - ...-++++ |.--+..|+. |----.- +...| .-+++..
T Consensus 237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~pei--Wy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEI--WYDYSMYLIEISDLLTEKGDVPDAKSLTDEAAS 314 (656)
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhHHHHHhcccccchhhHHHHHH
Confidence 11122222111111000 0 00001111 1111222211 1110000 11111 1345555
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHH---cCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 418 VVEKIKSLRHSKPLEITFTGLIISSM---DGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492 (857)
Q Consensus 418 l~~~m~~~~g~~pd~~t~~~ll~a~~---~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M 492 (857)
+++.... .-..-+..+|..+.+--- +....+....++++... ...|+ .+|...|..--+..-+..|..+|.+.
T Consensus 315 ~yEr~I~-~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 315 IYERAIE-GLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555443 222223344443332211 11134555555555554 23333 34666666666666677777777777
Q ss_pred HHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 493 TRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHA 571 (857)
Q Consensus 493 ~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~ 571 (857)
.+.+ ..+ ++..++++|.-+|. ++.+-|.++|+--.+. +.-++.--...++-+++.++=+.+..+
T Consensus 393 R~~~-------------r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~L 457 (656)
T KOG1914|consen 393 REDK-------------RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARAL 457 (656)
T ss_pred hhcc-------------CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHH
Confidence 7766 555 56666666666555 6667777777654432 222233334555566677777777777
Q ss_pred HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 572 FDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 572 ~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
|+.....++.|+ ...|..+|.-=..-|++.-++++-+++
T Consensus 458 FEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 458 FERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 777777655554 357777777777777777777776665
No 89
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.011 Score=67.80 Aligned_cols=388 Identities=14% Similarity=0.143 Sum_probs=228.0
Q ss_pred CCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCC-----
Q 003016 188 FTEGQMLKLLKG--LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNL----- 260 (857)
Q Consensus 188 p~~~t~~~ll~a--~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi----- 260 (857)
-|..|--.++.- |...|+.+.|.+-...+ .+..+|..|.+++.+..+++-|.-.+..|....|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 456666666543 66779999999887765 26689999999999999999888777777652121
Q ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 003016 261 ---YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVF 337 (857)
Q Consensus 261 ---~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~ 337 (857)
.|+ .+=.-+.....+.|.+++|+.+|++-++.. .|=..|...|.|++|+++-
T Consensus 795 a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D------------------------LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 795 AQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD------------------------LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred HHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH------------------------HHHHHHHhcccHHHHHHHH
Confidence 122 222223333457788999999999887642 3334466778888888876
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH-----------hhc--------CCCCCHHH
Q 003016 338 KQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM-----------EQR--------GVVGTASV 398 (857)
Q Consensus 338 ~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m-----------~~~--------~~~~d~~t 398 (857)
+.=-+-.++.+-+-| ..-+-..++++.|++.|++- .+. .-..|...
T Consensus 850 E~~DRiHLr~Tyy~y---------------A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L 914 (1416)
T KOG3617|consen 850 ETKDRIHLRNTYYNY---------------AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESL 914 (1416)
T ss_pred hhccceehhhhHHHH---------------HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHH
Confidence 543332233222222 12222334455555444432 111 00123333
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
|.--..-+-..|+.+.|+.+|...+. |.+++...|-.|++++|-++-++- -|......+...|-.
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~es-----gd~AAcYhlaR~YEn 979 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEES-----GDKAACYHLARMYEN 979 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhc-----ccHHHHHHHHHHhhh
Confidence 44444444567888888888776654 566777777889999998887664 366777788899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC---------------CHHHHHHHHHHHHHc
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH---------------QWEYFEYVYKGMALS 543 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g---------------~~~~a~~l~~~m~~~ 543 (857)
.|++.+|..+|.+.+. |...|.-|-.++ +.-.|-+.|++ .
T Consensus 980 ~g~v~~Av~FfTrAqa----------------------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe---~ 1034 (1416)
T KOG3617|consen 980 DGDVVKAVKFFTRAQA----------------------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE---L 1034 (1416)
T ss_pred hHHHHHHHHHHHHHHH----------------------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH---c
Confidence 9999999999987653 333333332222 22233333433 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAF---------DSLLEA-GEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA 613 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~---------~~m~~~-gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~ 613 (857)
|... ..-+..|-++|.+..|.++- +.+.+. .-..|+...+.--+-++.+.++++|..++-...
T Consensus 1035 g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar-- 1107 (1416)
T KOG3617|consen 1035 GGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR-- 1107 (1416)
T ss_pred chhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH--
Confidence 2221 12234578888888887762 222221 223466666666666777788888888765542
Q ss_pred CCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHHHhcc-CchhhhHhh
Q 003016 614 PFHITERQWTELFESNEDRISRDKLEKLLNALC-NCNAASSEITVSNLSRALHALCRS-EKERDLSSS 679 (857)
Q Consensus 614 ~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~-~~g~~p~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 679 (857)
-|..-++-|.. .++...+++.+.|. ..+-.|++.+-..++..+-.+|-. |..|.+.+.
T Consensus 1108 -------~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKK 1167 (1416)
T KOG3617|consen 1108 -------EFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKK 1167 (1416)
T ss_pred -------HHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 23334444433 33344444444444 222344555556666666666643 445665553
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.16 E-value=6e-05 Score=80.34 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=94.2
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH----c
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM----D 444 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~----~ 444 (857)
.+|...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ . ..| .+...+..++. -
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD-~~l~qLa~awv~l~~g 179 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DED-SILTQLAEAWVNLATG 179 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCC-HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCc-HHHHHHHHHHHHHHhC
Confidence 3455677777777776542 2334455667777888888888888888765 1 223 33333333332 2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS 524 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~ 524 (857)
...+.+|..+|+++...+.+++.+.|.+..++...|++++|.+++.+..... .-|..|+..++.++
T Consensus 180 ~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------------~~~~d~LaNliv~~ 245 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------------PNDPDTLANLIVCS 245 (290)
T ss_dssp TTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------------CCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------------cCCHHHHHHHHHHH
Confidence 3467888888888777667778888888888888888888888888765533 12445666677766
Q ss_pred HhcCCH-HHHHHHHHHHHH
Q 003016 525 ATAHQW-EYFEYVYKGMAL 542 (857)
Q Consensus 525 ~~~g~~-~~a~~l~~~m~~ 542 (857)
...|+. +.+.+.+.++..
T Consensus 246 ~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 246 LHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCChhHHHHHHHHHHH
Confidence 777766 556667776665
No 91
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15 E-value=0.019 Score=72.30 Aligned_cols=347 Identities=12% Similarity=-0.012 Sum_probs=208.8
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH-
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV- 315 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~- 315 (857)
.+...|+++.+...+..++.. ....+..........+...|++++|..++......-... +....+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~---------~~~~~~~~~~ 452 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDR---------NIELDGTLQA 452 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhcccc---------CcccchhHHH
Confidence 344567788777777776431 111122222334445567899999999988775431000 000011111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q 003016 316 -VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR---- 390 (857)
Q Consensus 316 -t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~---- 390 (857)
....+-..+...|+++.|...++.....-...+.... ....+.+...+...|++++|...+.+....
T Consensus 453 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 453 EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR--------IVATSVLGEVHHCKGELARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 1222223456789999999999998764212222111 011256677788899999999999887642
Q ss_pred CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCC--C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--
Q 003016 391 GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSL---RHSK--P-LEITFTGLIISSMDGGHIDDCISIFQHMKDH-- 461 (857)
Q Consensus 391 ~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~---~g~~--p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-- 461 (857)
|. .....+++.+...+...|+++.|...+.+.... .+.. + ....+..+...+...|++++|...+......
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 11 111234555667788999999999998876541 1211 1 2233444555667789999999999887551
Q ss_pred -CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh-----hhHHHHHhcCCHHHH
Q 003016 462 -CEP--NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS-----SMLEASATAHQWEYF 533 (857)
Q Consensus 462 -~~p--~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~-----~ll~a~~~~g~~~~a 533 (857)
..+ ....+..+...+...|+.++|.+.+.+...... .......+. ..+..+...|+.+.|
T Consensus 605 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 672 (903)
T PRK04841 605 NYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG------------NGRYHSDWIANADKVRLIYWQMTGDKEAA 672 (903)
T ss_pred ccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh------------cccccHhHhhHHHHHHHHHHHHCCCHHHH
Confidence 222 233445566677889999999999988865320 001111111 122344557899999
Q ss_pred HHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 003016 534 EYVYKGMALSGCQLDQ---TKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIPH-PLFFTEMLIQAIVQSNYEKAVA 605 (857)
Q Consensus 534 ~~l~~~m~~~g~~pd~---~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p~-~~~~~~li~~~~~~g~~~~A~~ 605 (857)
...+............ ..+..+..++...|+.++|...++..... |..++ ..+...+-.++.+.|+.++|..
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 673 ANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9887765432111111 11344556678899999999999877653 33332 2355556667788899999999
Q ss_pred HHHHhhhC
Q 003016 606 LINAMAYA 613 (857)
Q Consensus 606 l~~~M~~~ 613 (857)
.+.+....
T Consensus 753 ~L~~Al~l 760 (903)
T PRK04841 753 VLLEALKL 760 (903)
T ss_pred HHHHHHHH
Confidence 99987653
No 92
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=98.13 E-value=5.2e-08 Score=88.12 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=70.9
Q ss_pred HHHhccCchhhhHhhhhccccccccCcchhhhhhhhhhhccCcccccccccccccccc--------CCCCCC---cCCCc
Q 003016 665 HALCRSEKERDLSSSAHFGSQAIDISPLHGIHEAFDVKETENVPSSSASMMFENADLG--------ADPLPQ---KTDVA 733 (857)
Q Consensus 665 ~~~~~~~~~~~~~~~i~~~~~~v~~~~L~~l~~~~~~~~~g~vp~~~~~l~~~~~e~k--------~~~l~~---klaia 733 (857)
|.|..++.+||..+.++ ++...||+|+++.+.|+++++++ +..+.+ |||||
T Consensus 9 h~F~sgd~shp~~~~~~------------------~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAia 70 (116)
T PF14432_consen 9 HSFVSGDRSHPQSELIN------------------KMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIA 70 (116)
T ss_pred EEEEeCCCcCccHHHHH------------------HHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHH
Confidence 88999999999885333 44578999999999999888766 445555 99999
Q ss_pred cccccccCCCCcccc--C-cccccccccccccccCCCCCccccccc
Q 003016 734 VDIDSINHSSLSRQA--D-ADTEMFSKALSYIHSNDRPSNLCIDME 776 (857)
Q Consensus 734 ~~~i~~~~~~~iri~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (857)
||++++ ||. + ..|.|||...+||+--.|+.-++-|..
T Consensus 71 fgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~ 110 (116)
T PF14432_consen 71 FGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSN 110 (116)
T ss_pred hcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCC
Confidence 999999 442 3 579999999999998777777777754
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.12 E-value=0.0016 Score=64.50 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
+...|.-+|.+.|+...|..-+++..+.. +.+..+|..+-..|.+.|+.+.|.+-|+...+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D----------------Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-- 98 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----------------PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-- 98 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--
Confidence 45567778999999999999999988863 446778888888899999999999999998875
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-TASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.|+.... .|..-..+|..|.+++|...|++....-..+ -..||.-+.-|..+.|+.+.|...|++-..
T Consensus 99 ~p~~GdV-----------LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 APNNGDV-----------LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred CCCccch-----------hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 4444332 2777778889999999999998876543222 234577778888889999999999998876
Q ss_pred cCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 425 LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 425 ~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+-...+.-.+.....+.|++-.|...++....+..++..+.-.-|..-.+.|+.+.|-+.=..+.+.-
T Consensus 168 --~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 168 --LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred --hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2233345677788888889999999999999888666888888888888888999888888877777754
No 94
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.10 E-value=0.022 Score=65.62 Aligned_cols=402 Identities=12% Similarity=0.016 Sum_probs=245.8
Q ss_pred HhcCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH
Q 003016 165 LSEREMTAKNWK----FVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK 240 (857)
Q Consensus 165 l~~~~~~~~A~~----l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k 240 (857)
+.-++..+++.- .+++++...++-+...|-.+.-++...|.++.+.+.|+..... .......|+.+-..|+-
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~sa 369 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSA 369 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHH
Confidence 444555556543 3455555556678889999999999999999999999987543 22356789999999999
Q ss_pred cCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH-HH-HhcCCHHHHHHHHHHHHcCCC-----------------------
Q 003016 241 AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV-TL-GQVGLLKELVKLIERMRQKPS----------------------- 295 (857)
Q Consensus 241 ~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~-~~-~~~g~~~~A~~l~~~m~~~g~----------------------- 295 (857)
+|.-..|..+.+.-... .-.|+..+--.|+. .| -+.+.+++++..-.+.....+
T Consensus 370 ag~~s~Av~ll~~~~~~-~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 370 AGSDSKAVNLLRESLKK-SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred hccchHHHHHHHhhccc-ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh
Confidence 99999999998876542 11143333333332 23 344666777666655554210
Q ss_pred ----hhhhh--------hh-hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 296 ----KRIKN--------MH-RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 296 ----~~l~~--------m~-~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
.+..+ .+ +-+--.+..|++.-|-++ -|+..++++.|.+..++..+.+-.-+...
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~----------- 515 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKA----------- 515 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHH-----------
Confidence 00000 01 112222345555555444 35667778888888888877654555554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCCCHHHHHHH---HHHHHHCCCHHHHHHHHHHHHhc-------------
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQ-RGVVGTASVYYEL---ACCLCNNGRWQDAMLVVEKIKSL------------- 425 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~-~~~~~d~~t~~~l---I~~~~~~g~~~~A~~l~~~m~~~------------- 425 (857)
|.-|.-.+...+++.+|+.+.+...+ .|.- |+.| |..-...++.++|+.....+...
T Consensus 516 -whLLALvlSa~kr~~~Al~vvd~al~E~~~N-----~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~ 589 (799)
T KOG4162|consen 516 -WHLLALVLSAQKRLKEALDVVDAALEEFGDN-----HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDE 589 (799)
T ss_pred -HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh-----hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhh
Confidence 47777788888999999999876543 2220 0000 11112234555554444333320
Q ss_pred -------CCC-----CC-c-HHHHHHHHHHHH-c--CCCHHHHHHHHHHHhhCCCCC------HHHHHHHHHHHHhcCCH
Q 003016 426 -------RHS-----KP-L-EITFTGLIISSM-D--GGHIDDCISIFQHMKDHCEPN------IGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 426 -------~g~-----~p-d-~~t~~~ll~a~~-~--~g~~~~A~~if~~m~~~~~p~------~~~~~~li~~~~~~g~~ 482 (857)
.|. .| + ..|+..+..-.. + .-..+.....+... -.|+ ...|....+.+.+.+..
T Consensus 590 g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~---~~~~~~~~~~~~lwllaa~~~~~~~~~ 666 (799)
T KOG4162|consen 590 GKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL---PGPDSLWYLLQKLWLLAADLFLLSGND 666 (799)
T ss_pred hhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc---CCCCchHHHHHHHHHHHHHHHHhcCCc
Confidence 010 01 1 112222211111 1 11111111111111 1122 35677788889999999
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEAS 560 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~ 560 (857)
++|.-.+.+.... .| ....|.-.-..+-..|..++|.+.|..... +.|+.+ ...++-.++.
T Consensus 667 ~~a~~CL~Ea~~~---------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 667 DEARSCLLEASKI---------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLL 729 (799)
T ss_pred hHHHHHHHHHHhc---------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence 9998777776552 24 444555555666777999999999988775 677754 7778888899
Q ss_pred HcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 561 RAGKCHLLEH--AFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 561 ~~G~~~~A~~--~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
..|+-.-|.. ++..+.+.+ +.+...|..+-..+-+.|+.+.|.+.|....
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9998877777 888887754 3477899999999999999999999998853
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.09 E-value=0.016 Score=73.05 Aligned_cols=373 Identities=10% Similarity=0.001 Sum_probs=223.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKL----LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~l----l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L 234 (857)
......+...|.+.+|..... ..+ +......+ .......|.+..+...+..+..... .. +.......
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~---~a~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~-~~--~~~l~~~~ 415 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHAL---AAG---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL-LE--NPRLVLLQ 415 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHH---HCC---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH-hc--CcchHHHH
Confidence 344445556777776665333 222 22222222 2234445777776666655421100 11 22223344
Q ss_pred HHHHHHcCChhHHHHHHHHhHHcCCC-----CCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 235 LAILGKAGRPHEALRIFNLMLEDCNL-----YPDIA--AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 235 i~~y~k~g~~~~A~~vf~~m~~~~gi-----~pd~~--t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
...+...|++++|...+........- .+... ....+-..+...|++++|...+++....-
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------------- 482 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL------------- 482 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-------------
Confidence 55566789999999999877542110 11111 12222344567899999999999876531
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHH
Q 003016 308 PVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK---PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEA 380 (857)
Q Consensus 308 ~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A 380 (857)
...+ ...++.+...+...|+++.|...+.+.....-. +....+ ++..+...+...|++++|
T Consensus 483 --~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~----------~~~~la~~~~~~G~~~~A 550 (903)
T PRK04841 483 --PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW----------SLLQQSEILFAQGFLQAA 550 (903)
T ss_pred --CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH----------HHHHHHHHHHHCCCHHHH
Confidence 1122 234555666677899999999999888653211 111111 125667788899999999
Q ss_pred HHHHHHHhh----cCCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCc--HHHHHHHHHHHHcCCCHHH
Q 003016 381 VAAVRNMEQ----RGVV--G-TASVYYELACCLCNNGRWQDAMLVVEKIKSLR-HSKPL--EITFTGLIISSMDGGHIDD 450 (857)
Q Consensus 381 ~~lf~~m~~----~~~~--~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-g~~pd--~~t~~~ll~a~~~~g~~~~ 450 (857)
...+++... .+.. + ....+..+...+...|++++|...+.+..... ...+. ..++..+...+...|+.+.
T Consensus 551 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 630 (903)
T PRK04841 551 YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDN 630 (903)
T ss_pred HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHH
Confidence 999887543 2211 1 23345555666777899999999988765411 11122 2334455667778999999
Q ss_pred HHHHHHHHhh--CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---HhHhhhh
Q 003016 451 CISIFQHMKD--HCEPNIGTV-----NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD---EYTYSSM 520 (857)
Q Consensus 451 A~~if~~m~~--~~~p~~~~~-----~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd---~~t~~~l 520 (857)
|.+.+..... ........+ ...+..+...|+.+.|.+.+....... .... ...+..+
T Consensus 631 A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-------------~~~~~~~~~~~~~~ 697 (903)
T PRK04841 631 ARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-------------FANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-------------CccchhHHHHHHHH
Confidence 9999988754 111111111 112344566899999999987754321 1111 1123455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 521 LEASATAHQWEYFEYVYKGMALS----GCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~~~----g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
..++...|+.++|...+.+.... |..++. .+...+-.++.+.|+.++|...+.+..+.
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66778889999999999887753 433332 35556666688999999999999988765
No 96
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.036 Score=62.12 Aligned_cols=401 Identities=13% Similarity=0.131 Sum_probs=218.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH--
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-- 270 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l-- 270 (857)
+-+=++.+...|++++|.+....++..+ +.+...+-.=+-++.+.+++++|+.+.+.-. -..+++..
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~----pdd~~a~~cKvValIq~~ky~~ALk~ikk~~-------~~~~~~~~~f 83 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV----PDDEDAIRCKVVALIQLDKYEDALKLIKKNG-------ALLVINSFFF 83 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC----CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-------hhhhcchhhH
Confidence 3344566777899999999999987653 2356666666667888999999996654432 22233333
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 271 AVTLG--QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 271 i~~~~--~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
=.+|| +.+..++|+..+. | ..+ |..+...--..|.+.|++++|+.+|+.+.+.+..-
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-----~---------------~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd 143 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-----G---------------LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD 143 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-----c---------------ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence 44554 6789999999988 2 333 33355555566889999999999999998876432
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT---ASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d---~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
-..-. + ..|+.+-. +..+ +.|.....+|+ ...||. .+.+...|++.+|++++....+
T Consensus 144 ~d~~~----r-------~nl~a~~a-------~l~~-~~~q~v~~v~e~syel~yN~-Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 144 QDEER----R-------ANLLAVAA-------ALQV-QLLQSVPEVPEDSYELLYNT-ACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHH----H-------HHHHHHHH-------hhhH-HHHHhccCCCcchHHHHHHH-HHHHHhcccHHHHHHHHHHHHH
Confidence 21111 0 12221111 1111 12333334443 123443 4667889999999999988732
Q ss_pred c------CCCCCc--HH-----HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH----HHHHHHHHHHHhcCCHH-HHH
Q 003016 425 L------RHSKPL--EI-----TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI----GTVNAMLKVYSRNDMFS-KAK 486 (857)
Q Consensus 425 ~------~g~~pd--~~-----t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~----~~~~~li~~~~~~g~~~-~A~ 486 (857)
. .+-.-+ .. .-..+.-.+-..|+.++|..++....+...+|. +.-|.|+.+-....-++ .++
T Consensus 204 ~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 204 ICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred HHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHH
Confidence 0 011111 11 112333345578999999999999887544444 22344443322211111 111
Q ss_pred HHHHHHHHcCCCC---------cccc----------CC----------CCCCCCCCHhHhhhhHHHHHhc--CCHHHHHH
Q 003016 487 ELFEETTRANSSG---------YTFL----------SG----------DGAPLKPDEYTYSSMLEASATA--HQWEYFEY 535 (857)
Q Consensus 487 ~lf~~M~~~g~~~---------~~~~----------~~----------~~~~~~pd~~t~~~ll~a~~~~--g~~~~a~~ 535 (857)
..|+......... |..+ .+ .-.+..| ...+.+++..+... .....+..
T Consensus 284 ~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e 362 (652)
T KOG2376|consen 284 KSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIE 362 (652)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1111110000000 0000 00 0011223 23445555554443 23455555
Q ss_pred HHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003016 536 VYKGMALSGCQLDQ--TKHAWLLVEASRAGKCHLLEHAFD--------SLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVA 605 (857)
Q Consensus 536 l~~~m~~~g~~pd~--~t~~~Ll~~~~~~G~~~~A~~~~~--------~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~ 605 (857)
++....+ + .|.. .+.-..+......|+++.|.+++. .+.+.+..| .+-.+++..+.+.++-+-|-.
T Consensus 363 ~L~~~~~-~-~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 363 LLLQFAD-G-HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHHhc-c-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHH
Confidence 5555443 2 3333 344444455678999999999998 666655555 444556677777766544544
Q ss_pred HHHHhhhC--CCccCH----HHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 606 LINAMAYA--PFHITE----RQWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 606 l~~~M~~~--~~~p~~----~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
++.+.... ...+.. .+|.-+..---++|+.+++..+++++.+..
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 44443210 111111 233333333446699999999999998753
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.07 E-value=0.0015 Score=78.88 Aligned_cols=242 Identities=8% Similarity=0.017 Sum_probs=181.9
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003016 178 VRIMNQSGLMFTE-GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK-RDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255 (857)
Q Consensus 178 ~~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~-~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 255 (857)
|.++.++. ||. ..|...+.-....++++.|+++++++++.--. ...--.-+|.++++.-.--|.-+...++|++..
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444433 555 47888999999999999999999998765311 111124689999998888898889999999998
Q ss_pred HcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003016 256 EDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334 (857)
Q Consensus 256 ~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~ 334 (857)
+- -| -..|..|...|.+.+.+++|-++|+.|.+. +.-....|...+..+.+..+-+.|.
T Consensus 1525 qy----cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK----------------F~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1525 QY----CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK----------------FGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred Hh----cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH----------------hcchhhHHHHHHHHHhcccHHHHHH
Confidence 73 34 446888999999999999999999999987 4567788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHH
Q 003016 335 WVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQD 414 (857)
Q Consensus 335 ~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~ 414 (857)
.++.+.++.=.+-...-+ ..-.+.+-.++|+.+.++.+|+........ -...|+..|..-.++|+.+.
T Consensus 1585 ~lL~rAL~~lPk~eHv~~-----------IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEF-----------ISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred HHHHHHHhhcchhhhHHH-----------HHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHH
Confidence 999999876333223322 145666677899999999999988765433 23459999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcH--HHHHHHHHHHHcCCCHHHHHHH
Q 003016 415 AMLVVEKIKSLRHSKPLE--ITFTGLIISSMDGGHIDDCISI 454 (857)
Q Consensus 415 A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~i 454 (857)
+..+|++... .++.|-. +.|.--|..=-..|+-..+..+
T Consensus 1653 vR~lfeRvi~-l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1653 VRDLFERVIE-LKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHHHh-cCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999988 5666543 3455555544444554444333
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.05 Score=62.83 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhhhCCCccCH----HHHHHHHHHhhhccCHHHHHHHHHHHHhCC
Q 003016 599 NYEKAVALINAMAYAPFHITE----RQWTELFESNEDRISRDKLEKLLNALCNCN 649 (857)
Q Consensus 599 ~~~~A~~l~~~M~~~~~~p~~----~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g 649 (857)
+..+.+.-...|..+++-|+. ..|..|+..+....++..|-+.++.|..+.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 555566666778888877765 478889999999999999999999998664
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=0.00018 Score=76.82 Aligned_cols=127 Identities=15% Similarity=0.244 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 440 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 440 (857)
...+..|.+.++++.|.+.++.|.+.+ .|. +...+..++.. .+.+.+|..+|+++.. ...++..+.+.+..
T Consensus 135 al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~ 209 (290)
T PF04733_consen 135 ALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAV 209 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHH
Confidence 345566666666666666666666543 222 22233333222 2356677777777654 34456666666666
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 003016 441 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMF-SKAKELFEETTRAN 496 (857)
Q Consensus 441 a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~-~~A~~lf~~M~~~g 496 (857)
++...|++++|.+++.+....-+.+..+...+|.+....|+. +.+.+++.++....
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 677777777777776666554444555666666666666665 55666666666543
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.036 Score=61.47 Aligned_cols=235 Identities=11% Similarity=0.061 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--Cc----HHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK--PL----EITFTGL 438 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~--pd----~~t~~~l 438 (857)
..|.++.-+..+++.|.+-+....+.. .+..-++..-.+|...|++.+....-..-.+ .|.. -+ ...+..+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E-~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVE-VGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHH-HhHHHHHHHHHHHHHHHHh
Confidence 445555556666666666666655544 3333344555556666655554444333222 1100 00 1112222
Q ss_pred HHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-H
Q 003016 439 IISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-T 516 (857)
Q Consensus 439 l~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t 516 (857)
-.+|.+.++++.|...|..... +..|+. ..+....++++...+...-. .|+.. -
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~---------------~pe~A~e 360 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI---------------NPEKAEE 360 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh---------------ChhHHHH
Confidence 2345555666666666666544 222222 22333344555544444332 24331 1
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 003016 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAI 595 (857)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~ 595 (857)
...--..+.+.|++..|...|.++++.. +-|...|..---+|.+.|.+..|..=-+...+. .|+ ...|.-=..++.
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence 1122455777899999999999998865 445668888888889999998888876666554 232 223333233333
Q ss_pred HcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh
Q 003016 596 VQSNYEKAVALINAMAYAPFHITERQWTELFESNED 631 (857)
Q Consensus 596 ~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~ 631 (857)
...+++.|++.|.+-+. ..|+..-+..-+.-|..
T Consensus 438 ~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 34678888888887653 34666655555555554
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.047 Score=64.41 Aligned_cols=259 Identities=13% Similarity=0.137 Sum_probs=142.5
Q ss_pred ccCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH----------------------------
Q 003016 149 KRWRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTE-GQMLKLLKG---------------------------- 199 (857)
Q Consensus 149 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~-~t~~~ll~a---------------------------- 199 (857)
..-..|++.....+.++-..+...+-+++++...-..-..+. ..+..|+-.
T Consensus 978 l~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~i 1057 (1666)
T KOG0985|consen 978 LPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEI 1057 (1666)
T ss_pred CCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHH
Confidence 344567777777778888888888888888877633211111 111111111
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCC
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~ 279 (857)
+...+-.++|..+|+.. ..+....+.||. .-+.++.|.+.-++.. .+..|..+..+-.+.|.
T Consensus 1058 ai~~~LyEEAF~ifkkf--------~~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKF--------DMNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred HhhhhHHHHHHHHHHHh--------cccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHHHHHHhcCc
Confidence 11112223333333321 112223333332 1233444444333332 34567777777777777
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003016 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESY 359 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 359 (857)
..+|.+-|-+. -|+..|.-++..+.+.|.|++-...+...++..-.|...
T Consensus 1120 v~dAieSyika---------------------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--------- 1169 (1666)
T KOG0985|consen 1120 VKDAIESYIKA---------------------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--------- 1169 (1666)
T ss_pred hHHHHHHHHhc---------------------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch---------
Confidence 77777665432 356678888888888888888888777777777777766
Q ss_pred HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 003016 360 RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLI 439 (857)
Q Consensus 360 ~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 439 (857)
+.||-+|++.+++.+.+++.. -|+..-...+..-|...|.++.|.-+|.... -|..|.
T Consensus 1170 -----~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La 1227 (1666)
T KOG0985|consen 1170 -----SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLA 1227 (1666)
T ss_pred -----HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHH
Confidence 568888888888777665542 2344344455555666666666655554332 244444
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCH
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~ 482 (857)
..+...|.+..|...-+.. .++.||--+-.+|...+.+
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhh
Confidence 4444555555444433322 3455555555555554443
No 102
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.92 E-value=0.065 Score=59.49 Aligned_cols=376 Identities=11% Similarity=0.093 Sum_probs=220.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
-|+.+|+.||.-+... .+++++..++++.. -++-....|..-|.+-.+..+++....+|.+....-
T Consensus 18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv----------- 83 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV----------- 83 (656)
T ss_pred ccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----------
Confidence 4888999999877655 88999999999876 233356788888999889999999999998887642
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCChHHHH----HHHHHH-HHcCCCCCHHHHHHHHHHHHHhHHHHHHH---------H
Q 003016 306 WDPVLEPDLVVYNAVLNACVP-SHQWKGVF----WVFKQL-RKSGLKPSAATYGLAMESYRRCLLKVLVR---------A 370 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~-~g~~~~A~----~l~~~m-~~~g~~pd~~t~~~ll~~~~~~~~~~Li~---------~ 370 (857)
-+...|..-|+---+ .|+...+. +.|+.. .+.|+.+-...+ |+.-|+ -
T Consensus 84 ------LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~si-----------W~eYi~FL~~vea~gk 146 (656)
T KOG1914|consen 84 ------LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSI-----------WDEYINFLEGVEAVGK 146 (656)
T ss_pred ------hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchh-----------HHHHHHHHHccccccc
Confidence 346667766654322 33333322 233332 344544443332 444443 3
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHH------HHH-------HHCCCHHHHHHHHHHHHhc-CCCCCcHHH--
Q 003016 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELA------CCL-------CNNGRWQDAMLVVEKIKSL-RHSKPLEIT-- 434 (857)
Q Consensus 371 y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI------~~~-------~~~g~~~~A~~l~~~m~~~-~g~~pd~~t-- 434 (857)
|....+++..+++++++...-+..=...|+-.. +-. -+...+..|..++++.+.. .|..-+..+
T Consensus 147 ~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 147 YEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 444556777788888776543322122233221 100 0112344455554444320 111111000
Q ss_pred -------------HHHHHH----------------------------H---------------------HHcCCC-----
Q 003016 435 -------------FTGLII----------------------------S---------------------SMDGGH----- 447 (857)
Q Consensus 435 -------------~~~ll~----------------------------a---------------------~~~~g~----- 447 (857)
|-.+|. . +...|+
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 111111 0 111222
Q ss_pred --HHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhH
Q 003016 448 --IDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRN---DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 521 (857)
Q Consensus 448 --~~~A~~if~~m~~~-~~p~~~~~~~li~~~~~~---g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll 521 (857)
-+++..+++....+ ...+..+|..+.+-=-.. ...+.....+++..... ...|+ .+|...+
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~------------~~~~t-Lv~~~~m 373 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE------------DIDLT-LVYCQYM 373 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh------------ccCCc-eehhHHH
Confidence 23333344333331 111222222222110000 12333444444444322 13333 4577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Q 003016 522 EASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 522 ~a~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g~ 599 (857)
+.-.+...++.|..+|.+..+.+..+ +..++++++.-|| .++..-|.++|+.=..+ |- ++.--...++-+.+-++
T Consensus 374 n~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNd 450 (656)
T KOG1914|consen 374 NFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLND 450 (656)
T ss_pred HHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCc
Confidence 88888889999999999999988888 6678888887665 46778899999875543 43 23444566777778899
Q ss_pred HHHHHHHHHHhhhCCCccCH--HHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 600 YEKAVALINAMAYAPFHITE--RQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 600 ~~~A~~l~~~M~~~~~~p~~--~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
-..|..+|++....++.|+. .+|...|.-=..-|+...+.++-+.+...
T Consensus 451 d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 451 DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999998887666666 68999999889999999999988877744
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.91 E-value=0.0048 Score=69.66 Aligned_cols=329 Identities=13% Similarity=0.160 Sum_probs=158.2
Q ss_pred cCCChHHHHHHHHHHHH----------CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 167 EREMTAKNWKFVRIMNQ----------SGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~----------~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
.++.+++|+.+|.++.+ .|. |-.. .-.+.++++...|.-+.|-++-.. .+ | --+.|
T Consensus 556 eqn~te~aigmy~~lhkwde~i~lae~~~~-p~~eklk~sy~q~l~dt~qd~ka~elk~s------dg---d---~laai 622 (1636)
T KOG3616|consen 556 EQNATEEAIGMYQELHKWDEAIALAEAKGH-PALEKLKRSYLQALMDTGQDEKAAELKES------DG---D---GLAAI 622 (1636)
T ss_pred hcccHHHHHHHHHHHHhHHHHHHHHHhcCC-hHHHHHHHHHHHHHHhcCchhhhhhhccc------cC---c---cHHHH
Confidence 45566777777766542 232 3222 335567777777877777665321 11 2 12457
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--------Chh---hhhhhhh
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP--------SKR---IKNMHRK 304 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~~---l~~m~~k 304 (857)
..|.+.|.+..|.+.-..=.+ +..|......+..++.+...++.|-.+|+++..-. +++ .+.+.|-
T Consensus 623 qlyika~~p~~a~~~a~n~~~---l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 623 QLYIKAGKPAKAARAALNDEE---LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHcCCchHHHHhhcCHHH---hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 788888888877665432211 12454444444445444444444444444432211 000 0111111
Q ss_pred cCCCCCCCCHHHH--------------H------H---HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 305 NWDPVLEPDLVVY--------------N------A---VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRR 361 (857)
Q Consensus 305 ~f~~~~~pd~~t~--------------~------~---li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 361 (857)
.|...+..=...| | . .|.+.....+|.+|+.+++.+........ |
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~---y--------- 767 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASG---Y--------- 767 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccc---c---------
Confidence 1111000000001 0 1 11222334455555555554444322111 1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003016 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441 (857)
Q Consensus 362 ~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 441 (857)
|.-+.+.|+..|+++.|.++|-+-.. ++-.|..|.++|+|++|.++-.+. .|.......|.+-..-
T Consensus 768 --y~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~---~~~e~t~~~yiakaed 833 (1636)
T KOG3616|consen 768 --YGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEEC---HGPEATISLYIAKAED 833 (1636)
T ss_pred --chHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHh---cCchhHHHHHHHhHHh
Confidence 24555666666666666666654321 445566666666666666654443 2222233334444444
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhh
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSS 519 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ 519 (857)
.-+.|++.+|.+++-.+.. |+. -|.+|-+.|..+..+++..+- .||. .|-..
T Consensus 834 ldehgkf~eaeqlyiti~~---p~~-----aiqmydk~~~~ddmirlv~k~------------------h~d~l~dt~~~ 887 (1636)
T KOG3616|consen 834 LDEHGKFAEAEQLYITIGE---PDK-----AIQMYDKHGLDDDMIRLVEKH------------------HGDHLHDTHKH 887 (1636)
T ss_pred HHhhcchhhhhheeEEccC---chH-----HHHHHHhhCcchHHHHHHHHh------------------ChhhhhHHHHH
Confidence 4556666666666544443 433 355666666666666665542 1322 23334
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 520 MLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572 (857)
Q Consensus 520 ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~ 572 (857)
+..-+-..|++..|+.-|-+.. -|.+-+++|-.++.+++|.++-
T Consensus 888 f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 4444555566666665554432 2445556666666666665554
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.86 E-value=0.055 Score=64.00 Aligned_cols=398 Identities=10% Similarity=0.020 Sum_probs=203.8
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003016 171 TAKNWKFVRIMNQSGLMFTE-GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALR 249 (857)
Q Consensus 171 ~~~A~~l~~~M~~~g~~p~~-~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~ 249 (857)
...|+..|-+-.+. .|+- ..|..|-..|+..-+...|.+.|...... +..+...+.+..+.|++...++.|..
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHHH
Confidence 44444444433332 2332 36667777777777788888888887654 33477788888888888888888888
Q ss_pred HHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCC
Q 003016 250 IFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQ 329 (857)
Q Consensus 250 vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~ 329 (857)
+.-...+......-...|...--.|...++...|..-|+...+. -+.|...|..+..+|...|.
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCc
Confidence 84444332111111223334334456677777777777777664 24577888888888888888
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH---------------------HhHHHHHHHHHHHc-------CCH--
Q 003016 330 WKGVFWVFKQLRKSGLKPSAA--TYGLAMESYR---------------------RCLLKVLVRAFWEE-------GKI-- 377 (857)
Q Consensus 330 ~~~A~~l~~~m~~~g~~pd~~--t~~~ll~~~~---------------------~~~~~~Li~~y~k~-------g~~-- 377 (857)
+..|.++|.+.... .|+.. .|-.++--|. ....+.|...+.++ |-.
T Consensus 612 y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 88888888776543 34322 1111111111 11112222222111 222
Q ss_pred -----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHH---HCC--CHH-HHHHHHH-HHHhcCCCCCc--------------
Q 003016 378 -----NEAVAAVRNMEQRGVVGTASVYYELACCLC---NNG--RWQ-DAMLVVE-KIKSLRHSKPL-------------- 431 (857)
Q Consensus 378 -----~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~---~~g--~~~-~A~~l~~-~m~~~~g~~pd-------------- 431 (857)
+.+.+.|.-........+...|-.+-.+|. +-. .+. ..+.+|. +... .+.-|+
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~-~~~l~~~d~l~Lg~~c~~~h 768 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEK-TGALKKNDLLFLGYECGIAH 768 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHh-cccCcchhHHHHHHHHhhHH
Confidence 222222222222222223333333322221 111 000 0011111 1111 111111
Q ss_pred ------HHHHHHHHHHHHc----C---C-CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 432 ------EITFTGLIISSMD----G---G-HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANS 497 (857)
Q Consensus 432 ------~~t~~~ll~a~~~----~---g-~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~ 497 (857)
..+|..+...|.+ + + +...|...+....+-+..+..+||+|--. ...|.+.-|..-|-+-....
T Consensus 769 lsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se- 846 (1238)
T KOG1127|consen 769 LSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE- 846 (1238)
T ss_pred HHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-
Confidence 1122222211111 1 1 22345555555555455677777776554 55566776766666554432
Q ss_pred CCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH--
Q 003016 498 SGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGKCHLLEHAFDS-- 574 (857)
Q Consensus 498 ~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~-- 574 (857)
+....+|..+-.-|....+++.|...|...+. +.|+ ...+-..-...-..|+.-++..+|..
T Consensus 847 -------------p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 847 -------------PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred -------------ccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 23566777777777777888888888876654 3443 33333332223455666777777765
Q ss_pred HHH--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 575 LLE--AGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 575 m~~--~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
... .|--|+..-|-+........|+.++-+...+..
T Consensus 912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 221 244566666666666666667766655544443
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0024 Score=71.09 Aligned_cols=259 Identities=13% Similarity=0.124 Sum_probs=142.4
Q ss_pred HHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 274 LGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYG 353 (857)
Q Consensus 274 ~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 353 (857)
+.+.|++.+|.-.|+...+.. +-+...|--|-...+..++-..|+..+.+..+. .|+....
T Consensus 295 lm~nG~L~~A~LafEAAVkqd----------------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~Nlea- 355 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD----------------PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEA- 355 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC----------------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHH-
Confidence 457788888888888887763 447788888888888888888888888877764 5665443
Q ss_pred HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH
Q 003016 354 LAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI 433 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 433 (857)
.-+|.-.|...|.-.+|...++.-...... |..+..+ ...++.. .+
T Consensus 356 ----------LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~---------------~~--- 401 (579)
T KOG1125|consen 356 ----------LMALAVSYTNEGLQNQALKMLDKWIRNKPK-----YVHLVSA-GENEDFE---------------NT--- 401 (579)
T ss_pred ----------HHHHHHHHhhhhhHHHHHHHHHHHHHhCcc-----chhcccc-Ccccccc---------------CC---
Confidence 256667788888888888888765443221 1111100 0000000 00
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK 511 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~ 511 (857)
....+...+....++|-.+.. +..+|..+++.|--.|--.|.+++|.+.|+.... ++
T Consensus 402 ------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~---------------v~ 460 (579)
T KOG1125|consen 402 ------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ---------------VK 460 (579)
T ss_pred ------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh---------------cC
Confidence 011111122223333433333 2234555555555556666666666666665554 33
Q ss_pred C-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH---C------CC
Q 003016 512 P-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLE---A------GE 580 (857)
Q Consensus 512 p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~---~------gi 580 (857)
| |...||-|-..++...+.++|...|.+.++ ++|+-+ +...|-..|...|.+++|.+.|-.... . +-
T Consensus 461 Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~ 538 (579)
T KOG1125|consen 461 PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAP 538 (579)
T ss_pred CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCC
Confidence 5 444566666666666666666666666554 445422 333344445556666666655543322 1 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 581 IPHPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 581 ~p~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
.++...|.+|=.++...++.+-+.+...
T Consensus 539 ~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 539 MASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 1234566666656666666665544443
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.82 E-value=0.0006 Score=77.49 Aligned_cols=213 Identities=13% Similarity=0.098 Sum_probs=171.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+...+.+.|....|..+|++... |.-.|-+|+..|+..+|..+..+-.+ -+||..-|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHHhhhhccC
Confidence 5678889999999999999998753 88899999999999999988877654 47899999999999888
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEA 523 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a 523 (857)
...++.|.++++....+ .-..+-....+.++++++.+.|+.-.+.+ | -..||-..-.+
T Consensus 470 ~s~yEkawElsn~~sar------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---------------plq~~~wf~~G~~ 528 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR------AQRSLALLILSNKDFSEADKHLERSLEIN---------------PLQLGTWFGLGCA 528 (777)
T ss_pred hHHHHHHHHHhhhhhHH------HHHhhccccccchhHHHHHHHHHHHhhcC---------------ccchhHHHhccHH
Confidence 88899999999887652 11122222234789999999999876644 4 44678777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEK 602 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~ 602 (857)
.-+.++++.|.+.|..-.. ..||. ..||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|-..+-....-|.+++
T Consensus 529 ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 7788999999999987775 57775 489999999999999999999999998876 4455667777777888899999
Q ss_pred HHHHHHHhhhC
Q 003016 603 AVALINAMAYA 613 (857)
Q Consensus 603 A~~l~~~M~~~ 613 (857)
|++.+.+|...
T Consensus 606 a~~A~~rll~~ 616 (777)
T KOG1128|consen 606 AIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHHh
Confidence 99999997653
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.0074 Score=61.71 Aligned_cols=358 Identities=14% Similarity=0.082 Sum_probs=166.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH
Q 003016 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 185 g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~ 264 (857)
|+.....-+.+++..+.+...++.|.+++..-.+.. +.+....+.|-..|-...++..|-..++++... .|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~----p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~ 77 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS----PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPEL 77 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHH
Confidence 333333344555555555566666666665544321 125555566666666666666666666666542 3444
Q ss_pred HHHHHH-HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHH
Q 003016 265 AAYHSV-AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC--VPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 265 ~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~--~~~g~~~~A~~l~~~m~ 341 (857)
.-|... ...+-+.+.+..|+.+...|... |+...-..-+.+. -..+++..+..+.++..
T Consensus 78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~------------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp 139 (459)
T KOG4340|consen 78 EQYRLYQAQSLYKACIYADALRVAFLLLDN------------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP 139 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHhcCC------------------HHHHHHHHHHHHHHhcccccCcchHHHHHhcc
Confidence 333321 23444556666666666666431 2221111112221 23556666666665554
Q ss_pred HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 003016 342 KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR-GVVGTASVYYELACCLCNNGRWQDAMLVVE 420 (857)
Q Consensus 342 ~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~ 420 (857)
..| +..+. +..--...+.|+.++|.+-|+...+- |..| ...||.-+.- .+.|+++.|++...
T Consensus 140 ~en---~Ad~~------------in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iS 202 (459)
T KOG4340|consen 140 SEN---EADGQ------------INLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHIS 202 (459)
T ss_pred CCC---ccchh------------ccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHH
Confidence 322 11111 22222334666677777666665543 3333 3335544433 34466666666666
Q ss_pred HHHhcCCCCCcHHHH----HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 421 KIKSLRHSKPLEITF----TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 421 ~m~~~~g~~pd~~t~----~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
++.+ +|++-.+..- +-.++ ...+..-..++.. --+..+|.-...+.+.|+++.|.+-+-.|.-..
T Consensus 203 EIie-RG~r~HPElgIGm~tegiD----vrsvgNt~~lh~S------al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 203 EIIE-RGIRQHPELGIGMTTEGID----VRSVGNTLVLHQS------ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHH-hhhhcCCccCccceeccCc----hhcccchHHHHHH------HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 6665 4443211000 00000 0000000000000 011223333334456777777777777775443
Q ss_pred CCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 497 SSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 497 ~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
.-..|.+|...+.-.=. .+++..+.+-+.-+.... +....||..++-.||+..-++.|-.++-+=.
T Consensus 272 ------------E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 272 ------------EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ------------cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 13346666655432211 133444444344444321 2234577777777888777777777765432
Q ss_pred HCCC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHh
Q 003016 577 EAGE-IPHPLFFTEMLIQAIVQ-SNYEKAVALINAM 610 (857)
Q Consensus 577 ~~gi-~p~~~~~~~li~~~~~~-g~~~~A~~l~~~M 610 (857)
..-. -.+...|+ |++++... -..++|++=++.+
T Consensus 338 ~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 338 HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 2111 11333333 34444443 4556665544443
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.79 E-value=0.0022 Score=66.50 Aligned_cols=96 Identities=9% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN---IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAP 509 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~---~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~ 509 (857)
..+..+...+...|+++.|...|+.+....+.+ ...+..+..+|.+.|++++|...++++.+..
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~------------- 100 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH------------- 100 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-------------
Confidence 344555555666666666666666665522222 2456667777888888888888888887754
Q ss_pred CCCCHh----HhhhhHHHHHhc--------CCHHHHHHHHHHHHHc
Q 003016 510 LKPDEY----TYSSMLEASATA--------HQWEYFEYVYKGMALS 543 (857)
Q Consensus 510 ~~pd~~----t~~~ll~a~~~~--------g~~~~a~~l~~~m~~~ 543 (857)
|+.. ++..+-.++... |+.+.|.+.|+.+.+.
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 144 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR 144 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH
Confidence 4222 333333344433 6788888888888764
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=0.14 Score=60.73 Aligned_cols=325 Identities=13% Similarity=0.064 Sum_probs=163.4
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT---EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~---~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 229 (857)
++...+....+.+.+....+.|..+ .+......|- ...|...--.|...++...|+.-|+..++. .+.|..
T Consensus 524 tdaeaaaa~adtyae~~~we~a~~I--~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----dPkD~n 597 (1238)
T KOG1127|consen 524 TDAEAAAASADTYAEESTWEEAFEI--CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----DPKDYN 597 (1238)
T ss_pred hhhhhHHHHHHHhhccccHHHHHHH--HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----CchhHH
Confidence 4556666777777777777777666 2221111111 112222333355567777777777777653 445889
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHcCC------Chhh---
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA--VTLGQVGLLKELVKLIERMRQKP------SKRI--- 298 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li--~~~~~~g~~~~A~~l~~~m~~~g------~~~l--- 298 (857)
.|..|..+|..+|++..|.++|++...- .|+ .+|...- ..-+..|.+.+|+..+......- .+.+
T Consensus 598 ~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~ 673 (1238)
T KOG1127|consen 598 LWLGLGEAYPESGRYSHALKVFTKASLL---RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAES 673 (1238)
T ss_pred HHHHHHHHHHhcCceehHHHhhhhhHhc---CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999999999999999999999988762 243 2333322 23456788999988887765542 0111
Q ss_pred -hhh----hhhcCCC-------------------CCCCCHHHHHHHHHHHHhcCChH------HHHH-HHHHHHHcCCCC
Q 003016 299 -KNM----HRKNWDP-------------------VLEPDLVVYNAVLNACVPSHQWK------GVFW-VFKQLRKSGLKP 347 (857)
Q Consensus 299 -~~m----~~k~f~~-------------------~~~pd~~t~~~li~~~~~~g~~~------~A~~-l~~~m~~~g~~p 347 (857)
+.+ +-.-|.. ...-|...|-.+-.+|.-.-+.+ .... ++.+....+..|
T Consensus 674 ~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~ 753 (1238)
T KOG1127|consen 674 VIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALK 753 (1238)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCc
Confidence 100 0000000 00122222322222221100000 0000 111122233332
Q ss_pred CHHHHHHHHHHHH--------HhHHHHHHHHHHH----c----CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC
Q 003016 348 SAATYGLAMESYR--------RCLLKVLVRAFWE----E----GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 411 (857)
Q Consensus 348 d~~t~~~ll~~~~--------~~~~~~Li~~y~k----~----g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~ 411 (857)
+....-.....+. ...|..|...|.+ + .+...|...+..-.+.. .-+..+||.|--. ...|.
T Consensus 754 ~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 754 KNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred chhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccch
Confidence 2221000000000 2333333333333 1 12234555555443322 1234456655333 33344
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 412 WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 412 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
+.-|..-|-+-.. -.+....+|..+-..|....+++.|...|.....-.+.|...|--+-...-..|+.-++..+|..
T Consensus 832 va~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4444443333222 22334556666666677788888888888877765555667776666666667777777777766
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.73 E-value=0.0032 Score=65.36 Aligned_cols=186 Identities=13% Similarity=0.065 Sum_probs=127.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH---HHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI---GTVN 470 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~---~~~~ 470 (857)
....+..+...+.+.|++++|...|++......-.|. ..++..+..++...|++++|...++.+.+..+.+. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456777888899999999999999998762211121 23567778888999999999999999987322222 2455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 471 AMLKVYSRN--------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 471 ~li~~~~~~--------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.+..++.+. |+.++|.+.|+.+.... |+.. .+..+.... . .... ..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------------p~~~~~~~a~~~~~-~---~~~~------~~ 166 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---------------PNSEYAPDAKKRMD-Y---LRNR------LA 166 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---------------CCChhHHHHHHHHH-H---HHHH------HH
Confidence 555555554 78999999999998855 6542 222221111 1 0100 00
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-G-EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA 613 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-g-i~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~ 613 (857)
.....+...|.+.|++++|...++...+. . -+.....|..+..++...|++++|...++.+...
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 01124445688999999999999998875 2 2224578889999999999999999999888543
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.0021 Score=73.18 Aligned_cols=243 Identities=12% Similarity=0.097 Sum_probs=181.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+-...+|-...=..+...+...|-...|..+|+++.. |.-.|.+|+..|+...|..+..
T Consensus 390 ya~~lpp~Wq~q~~laell~slGitksAl~I~Erlem---------------------w~~vi~CY~~lg~~~kaeei~~ 448 (777)
T KOG1128|consen 390 YAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLEM---------------------WDPVILCYLLLGQHGKAEEINR 448 (777)
T ss_pred ccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------------------HHHHHHHHHHhcccchHHHHHH
Confidence 3334455444445566677888999999999988753 5788889999999999999998
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
+-.++ .||...|..+.+......-+++|.++++...... ...++.+ ....++++++.+.|+.-.+--+--
T Consensus 449 q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA-----~r~~~~~---~~~~~~fs~~~~hle~sl~~nplq 518 (777)
T KOG1128|consen 449 QELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARA-----QRSLALL---ILSNKDFSEADKHLERSLEINPLQ 518 (777)
T ss_pred HHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHH-----HHhhccc---cccchhHHHHHHHHHHHhhcCccc
Confidence 87774 5777788888888888888999999998765510 0111111 123689999999998877644456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
..+|-.+-.+..+.+++..|.+.|..-.. ..||. ..||.+-.+|.+.++-.+|...+.+..+.+
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvt---------------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVT---------------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhh---------------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 78899999999999999999999998876 55865 589999999999999999999999999887
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAG-EIPHPLFFTEMLIQAI 595 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g-i~p~~~~~~~li~~~~ 595 (857)
.. +...+-..+....+.|.+++|++.+.++.+.. ...|..+-..++....
T Consensus 584 ~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 584 YQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred CC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 43 33344444555578899999999999887652 1224455555544443
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.12 Score=55.62 Aligned_cols=305 Identities=8% Similarity=-0.006 Sum_probs=192.8
Q ss_pred CCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 311 EPDLVVYNAVLNACVP--SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
.|+..+....|.++++ .++...+...+-.+.....-|+.+.. ..++.+.|...|+..+|...|+...
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-----------l~~lak~~~~~Gdn~~a~~~Fe~~~ 259 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-----------MMALGKCLYYNGDYFQAEDIFSSTL 259 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-----------HHHHhhhhhhhcCchHHHHHHHHHh
Confidence 3333344444555444 45555666666666555555555544 3889999999999999999999876
Q ss_pred hcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH
Q 003016 389 QRGVV--GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 389 ~~~~~--~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~ 466 (857)
-.+.- -....|.. .+.+.|+.++...+...+... ..-...-|..-........+++.|..+-++..+--+.++
T Consensus 260 ~~dpy~i~~MD~Ya~---LL~~eg~~e~~~~L~~~Lf~~--~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~ 334 (564)
T KOG1174|consen 260 CANPDNVEAMDLYAV---LLGQEGGCEQDSALMDYLFAK--VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH 334 (564)
T ss_pred hCChhhhhhHHHHHH---HHHhccCHhhHHHHHHHHHhh--hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc
Confidence 54321 11112322 246778888888887777651 111122222223333456677777777776665333445
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGC 545 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~ 545 (857)
..|-.--.++...|+.++|.--|+..+. +.| +...|..++.+|.-.|...+|.-+-+...+. +
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~---------------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~ 398 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQM---------------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-F 398 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHh---------------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-h
Confidence 5554445567788999999999998877 445 7789999999999999999998877766542 2
Q ss_pred CCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHH
Q 003016 546 QLDQTKHAWLL-VEA-SRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQW 622 (857)
Q Consensus 546 ~pd~~t~~~Ll-~~~-~~~G~~~~A~~~~~~m~~~gi~p~~-~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~ 622 (857)
.-+..+.+.+- ..| -....-++|..+++.-.. +.|+. ..-+.+...|...|..++++.++++-. ...||....
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH 474 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLH 474 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHH
Confidence 22333332221 111 122233677777776554 44543 345556667778899999999999865 567888877
Q ss_pred HHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 623 TELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 623 ~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..|-.-......++++..-+......+..
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 77777777777777777766666544433
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.027 Score=57.72 Aligned_cols=308 Identities=12% Similarity=0.071 Sum_probs=193.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
-+++++..+.+..++..|.+++..-.+.. +.+....+.+-.+|-...++..|-..++++-..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~----------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-- 73 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS----------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-- 73 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 46677777788889999999988776652 447777888888889999999999999998764
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
.|...-|.. --....-+.+.+.+|+++...|.+..-.-+ .+...-....-+.+++-.+..++++...
T Consensus 74 ~P~~~qYrl-----------Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~-~~lqLqaAIkYse~Dl~g~rsLveQlp~- 140 (459)
T KOG4340|consen 74 HPELEQYRL-----------YQAQSLYKACIYADALRVAFLLLDNPALHS-RVLQLQAAIKYSEGDLPGSRSLVEQLPS- 140 (459)
T ss_pred ChHHHHHHH-----------HHHHHHHHhcccHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcccccCcchHHHHHhccC-
Confidence 565555521 122344567888999999998876421100 0010001112345677777777766542
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccC
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLS 504 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~ 504 (857)
. -+..+.+..-....+.|+.+.|.+-|+...+ +--.....||.-+.. .+.|+...|++...++.+.|....+-+.
T Consensus 141 e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 141 E---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred C---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 1 1222333332334578999999999999987 333345567766554 4668899999999999999855444332
Q ss_pred CCCCCCCCCHhH--------hhhhHHH-------HHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003016 505 GDGAPLKPDEYT--------YSSMLEA-------SATAHQWEYFEYVYKGMAL-SGCQLDQTKHAWLLVEASRAGKCHLL 568 (857)
Q Consensus 505 ~~~~~~~pd~~t--------~~~ll~a-------~~~~g~~~~a~~l~~~m~~-~g~~pd~~t~~~Ll~~~~~~G~~~~A 568 (857)
-+-..-.||+.+ -+.++.+ +.+.|+.+.|.+-+..|-- .....|++|...+.-. -..|++.+.
T Consensus 217 IGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 217 IGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred ccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 111111223221 2233333 3455888888888877742 2344566655443221 123445555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 569 EHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 569 ~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.+-+.-+...+- -...||..++-.||+...++.|-+++-+=
T Consensus 296 ~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 296 FEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 555555555422 23589999999999999999998887664
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.68 E-value=5.1e-05 Score=52.45 Aligned_cols=35 Identities=20% Similarity=0.493 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (857)
++||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.68 E-value=0.0038 Score=63.25 Aligned_cols=167 Identities=14% Similarity=0.021 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
.|.......+-..+-..|+-+.+..+...... ....|..+.+.++....+.|++..|...|++... .-++|...
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~----~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~ 136 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI----AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEA 136 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc----cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhh
Confidence 34333334455556666776666666554322 2233666777778888888888888888888776 45677888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|+.+--+|.+.|++++|..-|.+..+. ..-+...+|.|.-.+.-.|+.+.|..++......+..
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L----------------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALEL----------------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHh----------------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 888888888888888888888887764 2335566777777777788888888888877766543
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
...+- ..|.......|++++|..+-..-.
T Consensus 201 d~~v~-------------~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 201 DSRVR-------------QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred chHHH-------------HHHHHHHhhcCChHHHHhhccccc
Confidence 33332 567777777888888877765443
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.61 E-value=8.7e-05 Score=51.24 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+||+||.+|++.|++++|.++|.+|.+.|
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 379999999999999999999999999999
No 117
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.58 E-value=8.8e-05 Score=51.03 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 118
>PLN02789 farnesyltranstransferase
Probab=97.57 E-value=0.054 Score=58.66 Aligned_cols=214 Identities=9% Similarity=-0.035 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC-CHHHHHHHHHHHhhcCCCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG-KINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g-~~~~A~~lf~~m~~~~~~~ 394 (857)
++..+-..+...+..++|+.+..++++. .|+..|. |+..-.++.+.| .+++++..++++.+.+..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~yta-----------W~~R~~iL~~L~~~l~eeL~~~~~~i~~npk- 104 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTV-----------WHFRRLCLEALDADLEEELDFAEDVAEDNPK- 104 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHH-----------HHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-
Confidence 3444555566678889999999998864 5776664 565555666667 679999999999887654
Q ss_pred CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRW--QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~--~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
+..+|+.--..+.+.|+. ++++.+++.+.+ .-.-|..+|+..--.+.+.|.++++.+.++.+.+.-..|...|+..
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R 182 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQR 182 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHH
Confidence 334577665556666763 678888888876 2345667788888888888999999999999988656778888877
Q ss_pred HHHHHhc---CC----HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc----CCHHHHHHHHHHH
Q 003016 473 LKVYSRN---DM----FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA----HQWEYFEYVYKGM 540 (857)
Q Consensus 473 i~~~~~~---g~----~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~----g~~~~a~~l~~~m 540 (857)
...+.+. |. .+++++...++.... | |...|+.+...+... +...+|...+.+.
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~---------------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILAN---------------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhC---------------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 7666554 22 246777777777643 6 667888888877773 3445677777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHH
Q 003016 541 ALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 541 ~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
.+.+ ..+......|++.|+.
T Consensus 248 ~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 248 LSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred hccc-CCcHHHHHHHHHHHHh
Confidence 6532 2234566677777764
No 119
>PLN02789 farnesyltranstransferase
Probab=97.56 E-value=0.056 Score=58.56 Aligned_cols=127 Identities=11% Similarity=0.036 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHH
Q 003016 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL 274 (857)
Q Consensus 196 ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~ 274 (857)
+-..+...+..++|+.+.+.++...+. +..+|+.--.++.+.| .+++++..++.+.+. -+.+..+|+.--..+
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~----~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPG----NYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCch----hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 333344455566666666666553221 4445555444455555 356666666665542 223444555444444
Q ss_pred HhcCCH--HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 275 GQVGLL--KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 275 ~~~g~~--~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
.+.|.. ++++.+++.+.... ..|..+|+...-++...|+++++++.+.++++.+
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d----------------pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD----------------AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 444432 44555555555432 3455566665555555666666666666665554
No 120
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.0074 Score=67.31 Aligned_cols=249 Identities=16% Similarity=0.155 Sum_probs=172.2
Q ss_pred HHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHH
Q 003016 371 FWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHID 449 (857)
Q Consensus 371 y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~ 449 (857)
+.+.|++.+|.-.|+.....+.. +...|--|-..-..+++-..|+..+.+..+ +.|+ ....-+|--.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHH
Confidence 34667777777777776666532 556677777777788887778777777765 3343 455667777777777777
Q ss_pred HHHHHHHHHhh-C-----CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhh
Q 003016 450 DCISIFQHMKD-H-----CE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSM 520 (857)
Q Consensus 450 ~A~~if~~m~~-~-----~~---p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~l 520 (857)
.|...++.-.. + .. ++...-+. ..+.....+....++|-++.... +.++|......|
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~------------~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL------------PTKIDPDVQSGL 436 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC------------CCCCChhHHhhh
Confidence 77777766533 1 00 01110000 22333445667777888777654 134666677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 003016 521 LEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP-LFFTEMLIQAIVQS 598 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~-~~~~~li~~~~~~g 598 (857)
---|-..|.+++|...|+..+. +.|+. .+||-|-..++...+.++|...|++..+ +.|+- .++..|-..|...|
T Consensus 437 GVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhh
Confidence 7778888999999999999886 66764 5999999999999999999999999987 45653 45666788899999
Q ss_pred CHHHHHHHHHH---hhhCC------CccCHHHHHHHHHHhhhccCHHHHHHH
Q 003016 599 NYEKAVALINA---MAYAP------FHITERQWTELFESNEDRISRDKLEKL 641 (857)
Q Consensus 599 ~~~~A~~l~~~---M~~~~------~~p~~~~~~~Ll~a~~~~g~~e~~~~l 641 (857)
.+++|...|-. |...+ -.++..+|.+|=.+..-.+..+.+.+.
T Consensus 513 ~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 99999988766 43331 223456888888777777776655443
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.47 E-value=0.086 Score=58.11 Aligned_cols=209 Identities=10% Similarity=0.031 Sum_probs=131.1
Q ss_pred CCHHHHHHHHHHHhhcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHH
Q 003016 375 GKINEAVAAVRNMEQRG--VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCI 452 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~--~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 452 (857)
.++.++...-+.|+..+ -.|+...+...+.+.........+-.++ .+..+. .-...-|..-+ .+...|.+++|+
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~ 326 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSKR--GGLAAQYGRAL-QTYLAGQYDEAL 326 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhCc--cchHHHHHHHH-HHHHhcccchHH
Confidence 44556666666666433 2344444555555444333333332222 222211 11112233322 344568888888
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHH
Q 003016 453 SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWE 531 (857)
Q Consensus 453 ~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~ 531 (857)
..++.+....+.|...+....+.+.+.|+..+|.+.++++... .|+ ...+-.+-.++...|+..
T Consensus 327 ~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---------------~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 327 KLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---------------DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------CCCccHHHHHHHHHHHhcCChH
Confidence 8888887777777888888888888888888888888888874 376 344556667788888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 532 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 532 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+|..+++..... .+-|+..|..|-.+|...|+..++.....+ ++...|+++.|+.++....
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHH
Confidence 888888877653 355677888888888888887777665543 3445678888887777764
Q ss_pred hCCCccCHHHH
Q 003016 612 YAPFHITERQW 622 (857)
Q Consensus 612 ~~~~~p~~~~~ 622 (857)
+. ++++..+|
T Consensus 453 ~~-~~~~~~~~ 462 (484)
T COG4783 453 QQ-VKLGFPDW 462 (484)
T ss_pred Hh-ccCCcHHH
Confidence 43 33444444
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.44 E-value=0.039 Score=65.90 Aligned_cols=193 Identities=14% Similarity=0.036 Sum_probs=127.6
Q ss_pred HHHHHhcCCHHH-HHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 003016 197 LKGLGDKGSWRQ-AMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (857)
Q Consensus 197 l~a~~~~g~~~~-A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~ 275 (857)
=.+++..|.-++ +.+++.+.. -++...++...+.+++--...... .+..++..+-.|.....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~La~i~~ 97 (694)
T PRK15179 35 EAALAEPGESEEAGRELLQQAR---------------QVLERHAAVHKPAAALPELLDYVR--RYPHTELFQVLVARALE 97 (694)
T ss_pred HHHhcCcccchhHHHHHHHHHH---------------HHHHHhhhhcchHhhHHHHHHHHH--hccccHHHHHHHHHHHH
Confidence 334555565544 356665542 133334444444444443333333 23455778888888888
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGL 354 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 354 (857)
+.|.+++|..+++...+ ..| +...+..+..++.+.+.+++|+...++.... .|+..+.
T Consensus 98 ~~g~~~ea~~~l~~~~~-----------------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~-- 156 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQ-----------------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSARE-- 156 (694)
T ss_pred HcCCcHHHHHHHHHHHh-----------------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHH--
Confidence 88888888888888876 345 4555667777788888888888888888765 4666554
Q ss_pred HHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH
Q 003016 355 AMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434 (857)
Q Consensus 355 ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 434 (857)
.+.+-.++.+.|+.++|..+|++....+. -+..+|..+..++-..|+.++|...|+.... ...|....
T Consensus 157 ---------~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~ 224 (694)
T PRK15179 157 ---------ILLEAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARK 224 (694)
T ss_pred ---------HHHHHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHH
Confidence 36677777788888888888888887432 2356677788888888888888888888776 23344455
Q ss_pred HHHHH
Q 003016 435 FTGLI 439 (857)
Q Consensus 435 ~~~ll 439 (857)
|+..+
T Consensus 225 ~~~~~ 229 (694)
T PRK15179 225 LTRRL 229 (694)
T ss_pred HHHHH
Confidence 55444
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.44 E-value=0.034 Score=67.17 Aligned_cols=220 Identities=10% Similarity=0.073 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
..+..|+..+-..+++++|.++.+..++..+. ....|-.+...|.+.++.++|..+ .+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~----~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------- 89 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKK----SISALYISGILSLSRRPLNDSNLL--NL---------------- 89 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----ceehHHHHHHHHHhhcchhhhhhh--hh----------------
Confidence 36667777777777777777777765543211 122222222255566665555444 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
+.......++.-+..+...|...+ -+...+-.+..+|-+.|+.+++..+++++++.. |+..
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~-----------------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~ 150 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG-----------------ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNP 150 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh-----------------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccH
Confidence 222223333333333333444322 234467778888899999999999999999876 4433
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
.. .|.+...|+.. ++++|.+++.+...+ |....++..+.+++.++... .|
T Consensus 151 ~a-----------LNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~---~~ 200 (906)
T PRK14720 151 EI-----------VKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY---NS 200 (906)
T ss_pred HH-----------HHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc---Cc
Confidence 32 28888888888 999999888766443 56666777788888777651 23
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.+ +.-.++.+.+.. +...-+.++-.+-..|-...+++++..+++...+..
T Consensus 201 ~d~---------------d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~ 253 (906)
T PRK14720 201 DDF---------------DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD 253 (906)
T ss_pred ccc---------------hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC
Confidence 222 122222222222 122344555566666667777777777777776643
No 124
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.43 E-value=0.0002 Score=49.22 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+||++|.+|++.|+++.|.++|++|.+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999999999999988
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.41 E-value=0.048 Score=65.93 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=107.8
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH
Q 003016 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLK-GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF 229 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~-a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~ 229 (857)
.......+..|+..+...+.+++|..+.+.-.+. .|+...+-.+.. .+.+.+..+.+..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 3566788999999999999999999999966554 466654433222 44455554444443
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.+++......++.-...+...|..- .-+...+-.+..+|-+.|+.++|..+|+++.+..
T Consensus 88 ---~~l~~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------------- 146 (906)
T PRK14720 88 ---NLIDSFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------------- 146 (906)
T ss_pred ---hhhhhcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---------------
Confidence 3344444444554444444555542 2355688889999999999999999999999863
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.-|+.+.|.+-..|+.. ++++|.+++...+..
T Consensus 147 -~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 147 -RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred -cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 55788899999999998 999999988877653
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.37 E-value=0.045 Score=65.35 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 225 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
..++..+-.|.....+.|+.++|..+++...+. .|| ...+..+..++.+.+++++|+..+++.....
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--------- 150 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--------- 150 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---------
Confidence 346888889999999999999999999999873 465 5677888899999999999999999998753
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHH
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVA 382 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~ 382 (857)
+-+....+.+-.++.+.|++++|..+|+++...+ |+ ..++ ..+-..+-+.|+.++|..
T Consensus 151 -------p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~------------~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 151 -------SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGY------------VGWAQSLTRRGALWRARD 209 (694)
T ss_pred -------CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHH------------HHHHHHHHHcCCHHHHHH
Confidence 3355666677777889999999999999999843 33 3333 678888899999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 383 lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
.|+...+.-- +....|+..+. +...-..+++.+.
T Consensus 210 ~~~~a~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 210 VLQAGLDAIG-DGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHhhC-cchHHHHHHHH------HHHHHHHHHHHcC
Confidence 9998875432 22234554432 3333444555543
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.36 E-value=0.17 Score=55.95 Aligned_cols=150 Identities=14% Similarity=0.118 Sum_probs=111.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
...+.+.|.+++|+..++.+.+. .+-|+..+......+...++.++|.+.++.++.. .|+..
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~----------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~ 374 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA----------------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSP 374 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcc
Confidence 33445778889999999988775 3445666666677788899999999999998875 56643
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
.. +-.+-.+|.+.|+..+|..+++.-...+ .-|...|..|..+|...|+..+|..-..++
T Consensus 375 ~l-----------~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------- 434 (484)
T COG4783 375 LL-----------QLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-------- 434 (484)
T ss_pred HH-----------HHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH--------
Confidence 32 3567788888999999999998877655 346777999999999999888887665554
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
|...|.++.|...+....+...++..+|
T Consensus 435 -----------~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 435 -----------YALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred -----------HHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 4457888888888888877554555544
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.1 Score=53.15 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY 515 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~ 515 (857)
..-...|++.|++++|.+..... -+......=+..+.+..+++-|.+.+++|+.- -+..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----------------ded~ 170 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI----------------DEDA 170 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------------chHH
Confidence 33334466666666666666552 23333333344455556666666666666542 2445
Q ss_pred HhhhhHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 516 TYSSMLEASATA----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 516 t~~~ll~a~~~~----g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
|.+.|..++.+. +.+..|.-+|++|-+ ...|+..+.+....++...|++++|..+++....+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 555555555443 345555555555543 24555555555555555556666666665555544
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.041 Score=55.95 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
|..+ ..+-..|--.|+-+.+..+...... ....|....+..+....+.|++.+|...|++....
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------------- 129 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------------- 129 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-------------
Confidence 5555 6677778888999998888887665 33456667777999999999999999999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
-++|...||.+--+|.+.|+.++|..-|.+..+. .|+..+. .|.|.-.|.-.|+.+.|..++..
T Consensus 130 ---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~-----------~nNlgms~~L~gd~~~A~~lll~ 193 (257)
T COG5010 130 ---APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSI-----------ANNLGMSLLLRGDLEDAETLLLP 193 (257)
T ss_pred ---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchh-----------hhhHHHHHHHcCCHHHHHHHHHH
Confidence 4789999999999999999999999999998875 3333332 27777778888999999999988
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 387 MEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 387 m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
....+. -|..+-..+.-.....|++++|..+-..-
T Consensus 194 a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 194 AYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHhCCC-CchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 766543 35555677788888899999998876543
No 130
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.27 E-value=0.00032 Score=47.01 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
||+||++|++.|++++|.++|++|.+.|
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 4666666666666666666666666655
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.11 Score=52.95 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD---- 444 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~---- 444 (857)
..|++.|++++|++....... + +. ...=+..+.+..+.+-|...+++|.+ .-+..|.+.|.+++.+
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~--l--E~--~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN--L--EA--AALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch--H--HH--HHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhcc
Confidence 346666777777666654211 1 11 22223445566667777777777765 2345555555555543
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+.+.+|.-+|++|.++..|+..+.|-+..++...|++++|..++++.....
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 4556677777777766666777777777777777777777777777666543
No 132
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.26 E-value=0.00027 Score=47.33 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.24 E-value=0.0079 Score=66.50 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
-..-.+|+..+...++++.|..+|+++.+. .|+ .+..|+..+...++..+|.+++++..+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-------------- 229 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-------------- 229 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------------
Confidence 344556667777789999999999999984 255 4455888888899999999999998865
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+.|....+.-...|.+.++++.|+.+.+++.+. .|+.+.. |..|..+|.+.|+++.|+..++.+
T Consensus 230 --~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~-----------W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 230 --NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFET-----------WYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHH-----------HHHHHHHHHhcCCHHHHHHHHhcC
Confidence 3456677776677788999999999999999875 6877754 799999999999999999999988
Q ss_pred hh
Q 003016 388 EQ 389 (857)
Q Consensus 388 ~~ 389 (857)
+-
T Consensus 295 Pm 296 (395)
T PF09295_consen 295 PM 296 (395)
T ss_pred cC
Confidence 63
No 134
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.23 E-value=0.012 Score=59.16 Aligned_cols=120 Identities=10% Similarity=0.101 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHcCCC--HHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-SMDGGH--IDD 450 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~--~~~ 450 (857)
.++.+++...++...+.+ ..|...|..+...|...|++++|...|++..... +-+...+..+-.+ +...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 456677777777766655 3467789999999999999999999999988732 2345566666665 466677 599
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 451 A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+++++..+..+.+..++..+...+.+.|++++|...|+++.+..
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999998767788999999999999999999999999998864
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.17 Score=51.21 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=131.1
Q ss_pred cCChHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH-HHHHH
Q 003016 327 SHQWKGVFWVFKQLRK---SG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA-SVYYE 401 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~---~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~-~t~~~ 401 (857)
..+.++..+++.+|.. .| ..++..+. +.-++-+...+|+.+.|..+++.+..+-..+.. .-..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l-----------~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lk- 92 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTL-----------YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLK- 92 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHH-----------HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHH-
Confidence 4567788888887753 35 67777765 466666777889999999999998766422211 1111
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
..-+-..|.+++|+++|+.+.+ . -+.|.+++--=+...-..|+--+|++-+....+.+..|...|--+-..|...|+
T Consensus 93 -am~lEa~~~~~~A~e~y~~lL~-d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 93 -AMLLEATGNYKEAIEYYESLLE-D-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred -HHHHHHhhchhhHHHHHHHHhc-c-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence 1224567999999999999987 2 355666776666666667777788888888777788899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh-hhhHHHHHhc---CCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY-SSMLEASATA---HQWEYFEYVYKGMAL 542 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~-~~ll~a~~~~---g~~~~a~~l~~~m~~ 542 (857)
+++|.-.+++|.- +.|-...| ..+-..+.-. .+.+.+...|.+..+
T Consensus 170 f~kA~fClEE~ll---------------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 170 FEKAAFCLEELLL---------------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHH---------------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999987 44744443 3333333333 356667777777665
No 136
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.0042 Score=68.96 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=106.5
Q ss_pred HHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 003016 177 FVRIMNQ---SGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNL 253 (857)
Q Consensus 177 l~~~M~~---~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 253 (857)
++..|.+ .+...+...+..++..+....+++.+..++-........... -..+..++|..|.+.|..+.|+.++..
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~-~~~t~ha~vR~~l~~~~~~~~l~~L~n 128 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYL-LPSTHHALVRQCLELGAEDELLELLKN 128 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccc-cCccHHHHHHHHHhcCCHHHHHHHHhC
Confidence 4444443 345677888888999999888999999988777654322211 124556999999999999999999988
Q ss_pred hHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 254 MLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 254 m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
=.. +|+-||.+|+|.||..+.+.|++..|.++..+|...+ ...+..|+...+.+|.+-
T Consensus 129 ~~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe---------------~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 129 RLQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE---------------EFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh---------------ccCCchHHHHHHHHHHHh
Confidence 776 6999999999999999999999999999999987776 566778887777777665
No 137
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.20 E-value=0.0084 Score=57.00 Aligned_cols=96 Identities=11% Similarity=-0.001 Sum_probs=83.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
+......+.+.|++++|...|+.... --+.+...+..+-.++...|++++|...|+....-.+.+...+..+..++.+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 55567788999999999999999876 2344667788899999999999999999999998666788999999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 003016 479 NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g 496 (857)
.|+.++|...|.......
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998844
No 138
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.19 E-value=0.016 Score=58.23 Aligned_cols=120 Identities=10% Similarity=0.047 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH-HHHcCC--h
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI-LGKAGR--P 244 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~-y~k~g~--~ 244 (857)
.+..++++..++...+.. +.|...|..+...|...|+++.|...++..++..+ .+..++..+..+ |...|+ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~ 126 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG----ENAELYAALATVLYYQAGQHMT 126 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCc
Confidence 455577777777776665 56778899999999999999999999999987543 378888888886 477787 5
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
++|.++|++..+. -+-+..++..+...+.+.|++++|...|+++.+..
T Consensus 127 ~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 127 PQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999884 23467889999999999999999999999998863
No 139
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.18 E-value=0.42 Score=50.33 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=55.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH--HH
Q 003016 160 VLVDRLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL--LA 236 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L--i~ 236 (857)
.+-..+.-+|.+.+|+.-|..-.+-. |+.+ ++-.-...|...|.-..|+.=+..++..+ ||- +-..+ -.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK-----pDF-~~ARiQRg~ 114 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK-----PDF-MAARIQRGV 114 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC-----ccH-HHHHHHhch
Confidence 44455667788888888777665432 3333 33334455777788788888787777643 231 11111 22
Q ss_pred HHHHcCChhHHHHHHHHhHHc
Q 003016 237 ILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~ 257 (857)
.+.+.|.++.|..-|+.....
T Consensus 115 vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhc
Confidence 456788888888888888763
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.18 E-value=0.0032 Score=69.85 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG--LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
...+.+....++..+....+++.+..++...+... ...-..|. .++|+.|.+.|..+.++.+++.=
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~------------ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTH------------HALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccH------------HHHHHHHHhcCCHHHHHHHHhCh
Confidence 56677888888998888889999999888887652 22222333 68999999999999999999998
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 445 (857)
...|+.||..++|.||..+.+.|++..|.++...|.. .....+..|+...+.+|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999888 56667777877777777665
No 141
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.17 E-value=0.014 Score=55.38 Aligned_cols=96 Identities=10% Similarity=-0.025 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
.+.....++...|+++.|...|..++.. .+.+..+|..+..++.+.|++++|...|+..... -+.+...|..+.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg 99 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 3555677788899999999999998764 3347889999999999999999999999999872 345788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHcC
Q 003016 272 VTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.++.+.|++++|...|+.....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998874
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.15 E-value=0.92 Score=53.73 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=68.9
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
.+.|..++|..+++.....+.. |..|+..+-..|...+..++|..++++.... .|+......+..+|.|.+.+.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-----~P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK-----YPSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----CCcHHHHHHHHHHHHHHHHHH
Confidence 3678888888888777766644 7778888888888888888888888887642 245666677777888887776
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~ 277 (857)
.-.++=-+|-+ .++.+.+.+=++++.+.+.
T Consensus 128 ~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 128 KQQKAALQLYK--NFPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHHHHH--hCCcccchHHHHHHHHHHh
Confidence 54444444433 1223445544555555443
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.14 E-value=0.0096 Score=65.84 Aligned_cols=124 Identities=10% Similarity=0.042 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
.+|+..+...++++.|..+|+++.+.+ |+. +..|+..+...++-.+|+.++++... ..+-+......-...|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 677788888899999999999999887 443 45578888889999999999999886 233455555666667889
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.++.+.|..+.+++..-.+-+..+|..|..+|.+.|+++.|+..++.+..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999986666778999999999999999999999998864
No 144
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.07 E-value=0.54 Score=49.57 Aligned_cols=305 Identities=13% Similarity=0.089 Sum_probs=185.2
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV---AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
|-..+.-.|++.+|+.-|....+ -|+..|.++ ...|...|+...|+.=+.+..+ .
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle-----------------l 101 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE-----------------L 101 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh-----------------c
Confidence 33445556788888888887776 355555554 3467777877777777777765 5
Q ss_pred CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 311 EPDLVVYNA-VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 311 ~pd~~t~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
+||-..-.. --..+.+.|.++.|..=|+..++.. |+..+ ...++.+.-..++-..
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~---------------~~eaqskl~~~~e~~~------- 157 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL---------------VLEAQSKLALIQEHWV------- 157 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch---------------hHHHHHHHHhHHHHHH-------
Confidence 676432111 1223567888888888888887763 33221 1222222222222111
Q ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 390 RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 390 ~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
.-.++..+.-+|+...|+.....+.+ -.+-|...+..-..+|...|.+..|+.-++...+-..-++.+.
T Consensus 158 ---------l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ 226 (504)
T KOG0624|consen 158 ---------LVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGH 226 (504)
T ss_pred ---------HHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHH
Confidence 12234445556777777777777765 2334555566666777777887777776666655344566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH----hhhh---H------HHHHhcCCHHHHHHH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT----YSSM---L------EASATAHQWEYFEYV 536 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t----~~~l---l------~a~~~~g~~~~a~~l 536 (857)
--+-..+...|+.+.++...++-.+.+ ||... |-.+ . ......++|-++.+-
T Consensus 227 ykis~L~Y~vgd~~~sL~~iRECLKld---------------pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ 291 (504)
T KOG0624|consen 227 YKISQLLYTVGDAENSLKEIRECLKLD---------------PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEA 291 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHccC---------------cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 667777778888888888888777643 66542 1111 1 112233566666666
Q ss_pred HHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 537 YKGMALSGCQLDQTK---HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 537 ~~~m~~~g~~pd~~t---~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
.+...+..-....+. +..+-.+|...|++.+|++.-.+..+ +.|+ +.++.-=..+|.--..+++|+.=|+...+
T Consensus 292 ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 292 GEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 666655332212233 33444556778889999988888776 4454 66777667777777888888888887753
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.06 E-value=0.021 Score=53.39 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
.....+...+...|+.+.|...++.+.... +.+...|..+...|.+.|++++|..+|+..... .+.+..+|..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD----PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 455666777888899999999999887643 337788999999999999999999999988762 34567888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
...|...|++++|...|+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999988874
No 146
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.98 E-value=0.019 Score=53.59 Aligned_cols=98 Identities=11% Similarity=0.065 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
.....+...+.+.|++++|...|+.... . .+.+...+..+...+.+.|++++|..+++...+..+.+...+..+...|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455667778889999999999988876 2 2345667778888888899999999999988775566788888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
...|++++|...|+...+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999988854
No 147
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.87 E-value=0.0096 Score=52.46 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 395 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d 395 (857)
-...|..|...+++.....+|+.+++.|+ .|+..+|+.+|.+.... -++...-.+++-..+.+++.|...++.|+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R----~lD~~~ie~kl~~LLtvYqDiL~~~lKP~ 103 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKR----ELDSEDIENKLTNLLTVYQDILSNKLKPN 103 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHc----cccchhHHHHHHHHHHHHHHHHHhccCCc
Confidence 34567778888999999999999999999 99999995554433210 00111112234456667777777777777
Q ss_pred HHHHHHHHHHHHH
Q 003016 396 ASVYYELACCLCN 408 (857)
Q Consensus 396 ~~t~~~lI~~~~~ 408 (857)
..||+.++..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666544
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.84 E-value=0.013 Score=51.71 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC-CCCHhHhhhhHHHHHhcC--------CHHHHHHHHH
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL-KPDEYTYSSMLEASATAH--------QWEYFEYVYK 538 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~-~pd~~t~~~ll~a~~~~g--------~~~~a~~l~~ 538 (857)
+-...|.-+...+++.....+|..+++.| + .|...+|+.++.+.++.. .+-..+.+|+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~-------------i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYq 93 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG-------------ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQ 93 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC-------------CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Confidence 34556667777799999999999999999 8 899999999999887752 3445667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH
Q 003016 539 GMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 539 ~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
.|+..+++|+..||+.++..+.+
T Consensus 94 DiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 94 DILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHhccCCcHHHHHHHHHHHHH
Confidence 77777788888888777776543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.81 E-value=0.017 Score=48.74 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
|..+...+...|++++|...|.+.... .+.+...+..+...+...|++++|.+.|+......+.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 444555566666666666666666541 122234455555666666677777777666655334444566777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTR 494 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~ 494 (857)
.|+.++|...|.....
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776654
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.73 E-value=0.024 Score=60.45 Aligned_cols=132 Identities=15% Similarity=0.075 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
.+|..+++.+-+.+.++.|+.+|..+.+.+ ....++++..+++. |...++.+.|.+||+...+. +..+..-|..-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 467888888888888999999999987532 12234555555543 23346677799999998884 55678889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD---LVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+.-+...++.+.|..+|++.... +.++ ...|...+.-=.+.|+++.+..+.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~----------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS----------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT----------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh----------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764 3333 358999999989999999999999998875
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.73 E-value=0.06 Score=51.17 Aligned_cols=125 Identities=10% Similarity=0.049 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
..|..++..+ ..++...+...++.+.... |+. ...-.+-..+...|++++|...|+....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---------------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY---------------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA 76 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---------------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3455555555 4788888888888888765 433 2222344567777999999999998887
Q ss_pred cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 543 SGCQLDQ--TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 543 ~g~~pd~--~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 609 (857)
..-.|+. .....|...+...|++++|...++....... ....+...-+.+.+.|+.++|...|+.
T Consensus 77 ~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 77 NAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6522222 2344456667788899999888876433332 345566667778888999998888875
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=1.2 Score=48.23 Aligned_cols=107 Identities=12% Similarity=0.211 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
+.-|.-+...|+...|.++..+.. +||..-|-..|.+|+..++|++-..+-.. +-.++.|-.++.+|.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHH
Confidence 455666667788777777766653 46777788888888888888766554221 2234778888888888
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
.|+..+|..+...+. +..-+.+|.++|++.+|.+.-.+
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888887776632 25667778888888888766433
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=1.2 Score=48.09 Aligned_cols=127 Identities=13% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL 547 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p 547 (857)
+.+..|.-+...|+...|.++-.+. -.||..-|-..|.+++..++|++-.++... .-
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F-----------------kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kK 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF-----------------KVPDKRFWWLKIKALAENKDWDELEKFAKS------KK 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc-----------------CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CC
Confidence 3445566666777777777776665 347777777788888888887776654321 12
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 003016 548 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 627 (857)
Q Consensus 548 d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~ 627 (857)
.+.-|-.++.+|.+.|...+|..+...+ + +..-+..|.+.|.+.+|.+..-+.. |...+..+..
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i~~ 299 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQILK 299 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHHHH
Confidence 3456677777777778777777776652 1 2445677777788777776654442 3344555555
Q ss_pred Hhhhcc
Q 003016 628 SNEDRI 633 (857)
Q Consensus 628 a~~~~g 633 (857)
.|....
T Consensus 300 ~~~~~~ 305 (319)
T PF04840_consen 300 RCPGNN 305 (319)
T ss_pred HCCCCC
Confidence 554433
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.69 E-value=0.053 Score=51.53 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
.|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~------------ 78 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA------------ 78 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC------------
Confidence 344444444 3566666666666666631 122 1222233455666677777777777766543
Q ss_pred CCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 307 DPVLEPD--LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 307 ~~~~~pd--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
..|+ ....-.+...+...|++++|+..+.........|. . +..+-+.|.+.|+.++|...|
T Consensus 79 ---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~--~------------~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 79 ---PDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKAL--A------------AELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred ---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHH--H------------HHHHHHHHHHCCCHHHHHHHH
Confidence 2222 12233345556667777777776654222111111 1 255666667777777777666
Q ss_pred HH
Q 003016 385 RN 386 (857)
Q Consensus 385 ~~ 386 (857)
+.
T Consensus 142 ~~ 143 (145)
T PF09976_consen 142 QK 143 (145)
T ss_pred HH
Confidence 54
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.68 E-value=0.03 Score=59.77 Aligned_cols=129 Identities=13% Similarity=0.089 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
+|..++...-+.+..+.|..+|.+......+..+.+...+++.. ...++.+.|..||+...+.+..+...|...++.+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 46666666666666666666666665422233344333333322 22355555777777777666667777777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 478 RNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+.|+.+.|..+|++.... .|.. ..|...+.-=...|+++.+..+.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~---------------l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS---------------LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT---------------SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh---------------cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776542 1322 2566666655566666666666666554
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.68 E-value=0.025 Score=47.77 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 232 TKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 232 n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.|....... +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------~ 65 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------P 65 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------C
Confidence 34444555556666666666655442 11233455555555556666666666666555432 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
.+..++..+...+...|+++.|...+....+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 2334555555555566666666665555543
No 157
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.63 E-value=0.035 Score=55.12 Aligned_cols=88 Identities=22% Similarity=0.328 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----------
Q 003016 262 PDIAAYHSVAVTLGQV-----GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP---------- 326 (857)
Q Consensus 262 pd~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~---------- 326 (857)
.|-.+|..++..|.+. |..+-....+..|.+.| +..|..+|+.||+.+=+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg---------------v~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG---------------VEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC---------------CcccHHHHHHHHHhCCCCCcccccHHH
Confidence 4444555555444432 44444444455555554 55555555555554432
Q ss_pred ------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 327 ------SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 327 ------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
-.+-+-|++++++|...|+-||..|+ ..|++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~------------~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETE------------QMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHH------------HHHHHHhccccH
Confidence 12346789999999999999999998 778888776654
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=1 Score=45.73 Aligned_cols=184 Identities=14% Similarity=0.097 Sum_probs=108.8
Q ss_pred CCHHHHHHHHHHHHhc--CC-CCCcHHH-HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003016 410 GRWQDAMLVVEKIKSL--RH-SKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~--~g-~~pd~~t-~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A 485 (857)
.+.++.++++.+|... .| ..++..+ |-.++-+...+|+.+.|...++.+...++.+..+-..-.-.+--.|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3455556665555431 12 3455443 455566666777888888888777765522222221111223446778888
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGK 564 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~ 564 (857)
+++++...+.. | |.+++--=+...-..|+--+|++-+.+..+ .+..|...|.-+-..|...|.
T Consensus 106 ~e~y~~lL~dd---------------pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 106 IEYYESLLEDD---------------PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHHhccC---------------cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhH
Confidence 88888877655 4 455555544444445655566666655554 256677778778788888888
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHhh
Q 003016 565 CHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQS---NYEKAVALINAMA 611 (857)
Q Consensus 565 ~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g---~~~~A~~l~~~M~ 611 (857)
++.|.-.++++.-. .| ++..+..+-..+...| +++-|.+.+.+-.
T Consensus 170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88888887777653 33 3445555555555443 3455666666654
No 159
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=1.9 Score=48.39 Aligned_cols=379 Identities=13% Similarity=0.071 Sum_probs=217.1
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh
Q 003016 165 LSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (857)
Q Consensus 165 l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~ 244 (857)
....|.++.|+.+|.+-.... ++|...|+.-..+|+..|+++.|.+=-...++..+.. .--|+-+-.++.-.|++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSRKGAALFGLGDY 86 (539)
T ss_pred hcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHHhHHHHHhcccH
Confidence 446788889999888877665 3477788888889999999988888777666543321 24577777777778899
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc---CCH---------------------HHH-HHHHHHHHcCCChhhh
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV---GLL---------------------KEL-VKLIERMRQKPSKRIK 299 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~---g~~---------------------~~A-~~l~~~m~~~g~~~l~ 299 (857)
++|+.-|.+-.+. -+-|...++-+..++... ++. +.+ ..++...++.. .++.
T Consensus 87 ~eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p-~~l~ 163 (539)
T KOG0548|consen 87 EEAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP-TSLK 163 (539)
T ss_pred HHHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc-Hhhh
Confidence 9999988887663 122345555555555111 000 000 11111111111 1100
Q ss_pred ---------------------hhh---hhcCCCCCCC------------CH----------HHHHHHHHHHHhcCChHHH
Q 003016 300 ---------------------NMH---RKNWDPVLEP------------DL----------VVYNAVLNACVPSHQWKGV 333 (857)
Q Consensus 300 ---------------------~m~---~k~f~~~~~p------------d~----------~t~~~li~~~~~~g~~~~A 333 (857)
.++ ...-..+..| |. .-...+.++.-+..++..+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 000 0000001111 11 1234466666777788888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH-------HHHHH
Q 003016 334 FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE-------LACCL 406 (857)
Q Consensus 334 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~-------lI~~~ 406 (857)
.+-+....+.. ...+| ++..-.+|...|........-+.-.+.|-..- .-|+. +-.+|
T Consensus 244 ~q~y~~a~el~---~~it~-----------~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-ad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 244 IQHYAKALELA---TDITY-----------LNNIAAVYLERGKYAECIELCEKAVEVGRELR-ADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHHHhHh---hhhHH-----------HHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-HHHHHHHHHHHHhhhhh
Confidence 88777777654 45555 47788888888888887777766655553211 11333 33456
Q ss_pred HHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 003016 407 CNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-GTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 407 ~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A 485 (857)
.+.++++.|+..|.+... ....|+..+ +....+++........- +.|.. .-.-.--..+.+.|++..|
T Consensus 309 ~k~~~~~~ai~~~~kaLt-e~Rt~~~ls---------~lk~~Ek~~k~~e~~a~-~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALT-EHRTPDLLS---------KLKEAEKALKEAERKAY-INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhHHhHHHHHHHHHHHhh-hhcCHHHHH---------HHHHHHHHHHHHHHHHh-hChhHHHHHHHHHHHHHhccCHHHH
Confidence 667889999999998776 555555332 22233333333333222 11222 1111224556677888888
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcC
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAG 563 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G 563 (857)
.+.+.+++... | |...|...-.+|.+.|.+..|+.=-+..++. .|+- ..|.-=..++-...
T Consensus 378 v~~YteAIkr~---------------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 378 VKHYTEAIKRD---------------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHhcC---------------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHH
Confidence 88888877754 5 5567777777777778777777665555543 3432 23333333444556
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 003016 564 KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV 596 (857)
Q Consensus 564 ~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~ 596 (857)
+++.|.+.|.+..+.+ |+..-+..-+.-|..
T Consensus 441 ~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 441 EYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 7778888887776653 444433333333333
No 160
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.46 E-value=0.029 Score=55.68 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
-..|..+|..++..|.+ .|..+-....+..|.+.|+.-|..+| +.|++.+=+ |.+
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y------------~~LLDvFPK-g~f------- 102 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVY------------KALLDVFPK-GKF------- 102 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHH------------HHHHHhCCC-CCc-------
Confidence 46788899999999875 58888888999999999999999999 666655443 211
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHh
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH-IDDCISIFQHMK 459 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-~~~A~~if~~m~ 459 (857)
+|... +.++..- ...+-+-|++++++|.. .|+.||..|+..|++.+++.+. +.+..++.-.|.
T Consensus 103 --------vp~n~-fQ~~F~h--yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 103 --------VPRNF-FQAEFMH--YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred --------ccccH-HHHHhcc--CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 12111 1111111 11234456666666666 6666666666666666655443 233333333343
No 161
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=1.6 Score=50.72 Aligned_cols=348 Identities=13% Similarity=0.058 Sum_probs=194.6
Q ss_pred HHHCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhH
Q 003016 181 MNQSGLMFTEGQMLK-----LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLML 255 (857)
Q Consensus 181 M~~~g~~p~~~t~~~-----ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 255 (857)
+.+.|++.+...|.. +|..+...+.+..|.++-.++-.. ....-.+|.....-+.+..+..+ ..+++.+.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p----~~~~~~Vl~~Wa~~kI~~~d~~d-~~vld~I~ 497 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLP----ESQGDRVLLEWARRKIKQSDKMD-EEVLDKID 497 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCc----cccccHHHHHHHHHHHhccCccc-hHHHHHHH
Confidence 446688888877755 577788889999999999887321 11124677777777777643221 23334443
Q ss_pred HcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003016 256 EDCNL-YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVF 334 (857)
Q Consensus 256 ~~~gi-~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~ 334 (857)
++.+. ..+.++|..+.+-.-+.|+.+-|..+++.=...+..- .+--+..-+...+.-+.+.|+.+...
T Consensus 498 ~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV-----------~lLL~m~~~~~AL~kaies~d~~Li~ 566 (829)
T KOG2280|consen 498 EKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQV-----------PLLLKMKDSSLALKKAIESGDTDLII 566 (829)
T ss_pred HHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchh-----------HHHhccchHHHHHHHHHhcCCchhHH
Confidence 32222 2356788888888889999999999887543332000 00112234566777888889998888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 335 WVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ-RGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 335 ~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~-~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
.++-.|.+.- +...| +....+...|..+|.+..+ .+-. .+-+.| +.++-.
T Consensus 567 ~Vllhlk~~~---~~s~l------------------~~~l~~~p~a~~lY~~~~r~~~~~-------~l~d~y-~q~dn~ 617 (829)
T KOG2280|consen 567 QVLLHLKNKL---NRSSL------------------FMTLRNQPLALSLYRQFMRHQDRA-------TLYDFY-NQDDNH 617 (829)
T ss_pred HHHHHHHHHH---HHHHH------------------HHHHHhchhhhHHHHHHHHhhchh-------hhhhhh-hcccch
Confidence 8888876541 11111 1111234455566655433 2211 111112 222222
Q ss_pred HHHHHHHHH--Hh---cCCCCCcHHHHHHHHHHHHcCCC----------HHHHHHHHHHHhh--CCCCCHHHHHHHHHHH
Q 003016 414 DAMLVVEKI--KS---LRHSKPLEITFTGLIISSMDGGH----------IDDCISIFQHMKD--HCEPNIGTVNAMLKVY 476 (857)
Q Consensus 414 ~A~~l~~~m--~~---~~g~~pd~~t~~~ll~a~~~~g~----------~~~A~~if~~m~~--~~~p~~~~~~~li~~~ 476 (857)
.+..-|..- .. ..+..|+.. ..-++|++... ...-.++++.+.. +..-.--+.+--+.-+
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~l 694 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTL 694 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHH
Confidence 222222110 00 012233322 22333443332 1122223333333 1222233344455556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 556 (857)
...|+-.+|.++-.+. -.||-..|--=+.+++..+++++-+++-+.+. .+.-|.-.+
T Consensus 695 i~~g~~k~a~ql~~~F-----------------kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 695 ILIGQNKRAEQLKSDF-----------------KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred HHccchHHHHHHHHhc-----------------CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 6778888888777765 34777777777888888888887766555432 134455567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 557 VEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALIN 608 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~ 608 (857)
.+|.+.|+.++|.+++.+... +...+.+|.+.|++.+|.++.-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHH
Confidence 778888888888888765422 1156677888888888776643
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.25 E-value=0.13 Score=46.47 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCC-CCHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY-PDIAAYHSV 270 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~-pd~~t~~~l 270 (857)
++..+...+.+.|+++.|...+..+....+.. ......+..+...|.+.|+++.|...|+.+.....-. ....++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKS-TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45566667777888888888888887543221 1124456667888888888888888888877632111 124567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
..++.+.|+.++|...++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 788888888888888888887753
No 163
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.20 E-value=0.14 Score=46.10 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVV--GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~a 441 (857)
-.+...+.+.|++++|...|+.+.+.... .....+..+..++.+.|+++.|...|+.......- ......+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 46667778888888898888888765321 12345666788888888888888888887762211 1123456666677
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
+.+.|+.++|...++.+....+.+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 788888888888888887754444444433
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.99 E-value=1.2 Score=47.69 Aligned_cols=130 Identities=9% Similarity=0.086 Sum_probs=77.0
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-----CC
Q 003016 323 ACVPS-HQWKGVFWVFKQLRKSGLKP-SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV-----GT 395 (857)
Q Consensus 323 ~~~~~-g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-----~d 395 (857)
.|-.. |+++.|.+.|.+..+.--.- .....+ ..+..+...+.+.|++++|..+|+++...-.. .+
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~--------~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAA--------ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHH--------HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHH--------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 34444 67778887777765431111 111111 12367788899999999999999998754322 11
Q ss_pred HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCc--HHHHHHHHHHHHc--CCCHHHHHHHHHHHhh
Q 003016 396 AS-VYYELACCLCNNGRWQDAMLVVEKIKSL-RHSKPL--EITFTGLIISSMD--GGHIDDCISIFQHMKD 460 (857)
Q Consensus 396 ~~-t~~~lI~~~~~~g~~~~A~~l~~~m~~~-~g~~pd--~~t~~~ll~a~~~--~g~~~~A~~if~~m~~ 460 (857)
.. .|-..+-++...|++..|...|++.... .++..+ ......||.+|-. ...+..+..-|+.+.+
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 21 2333444667789999999999998752 123222 3456777888754 4567777777777765
No 165
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.91 E-value=0.4 Score=55.60 Aligned_cols=143 Identities=14% Similarity=0.046 Sum_probs=94.6
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhc--------
Q 003016 462 CEPNIGTVNAMLKVYSRN-----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATA-------- 527 (857)
Q Consensus 462 ~~p~~~~~~~li~~~~~~-----g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~-------- 527 (857)
.+.|...|...+.+.... +....|..+|++..+.. ||- ..|..+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---------------P~~a~a~A~la~~~~~~~~~~~~~~ 397 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---------------PDFTYAQAEKALADIVRHSQQPLDE 397 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---------------CCcHHHHHHHHHHHHHHHhcCCccH
Confidence 456778888888876542 23678999999988844 764 3344333333221
Q ss_pred CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 528 HQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
.++..+.+........ ....+...|.++-......|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~ 475 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADA 475 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1123334444433332 233455677777666667899999999999988864 6888899888899999999999999
Q ss_pred HHHhh-hCCCccCHHH
Q 003016 607 INAMA-YAPFHITERQ 621 (857)
Q Consensus 607 ~~~M~-~~~~~p~~~~ 621 (857)
+++.. ..|..|+...
T Consensus 476 ~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 476 YSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHHhcCCCCchHHH
Confidence 98853 3455554433
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.84 E-value=0.023 Score=48.33 Aligned_cols=47 Identities=19% Similarity=0.444 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 375 GKINEAVAAVRNMEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
|+++.|..+|+++.+.... ++...|-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555444331 1233333345555555555555555544
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.82 E-value=0.14 Score=56.75 Aligned_cols=91 Identities=5% Similarity=-0.045 Sum_probs=70.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS 483 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~ 483 (857)
..+...|++++|+..|.+... -.+-+...|..+..+|.+.|++++|...++......+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 445567888888888888776 222345567777778888888888888888887754557788888889999999999
Q ss_pred HHHHHHHHHHHcC
Q 003016 484 KAKELFEETTRAN 496 (857)
Q Consensus 484 ~A~~lf~~M~~~g 496 (857)
+|+..|++.....
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988854
No 168
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=4.4 Score=47.39 Aligned_cols=332 Identities=9% Similarity=0.062 Sum_probs=200.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG---SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g---~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
..+++++..++.+..|+.+-..|...-.+- ...|.....-+.+.. +-+.+..+-+.+ .. . .....+|....
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~---~-~~~~iSy~~iA 514 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SA---K-LTPGISYAAIA 514 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh-cc---c-CCCceeHHHHH
Confidence 567899999999999999988886443222 566777776666653 333444444433 11 1 12446777787
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLY---PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~---pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.---.+|+++.|..+++.=+....-. -+..-+...+.-+.+.|+.+-...++-.|...-
T Consensus 515 ~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------------------ 576 (829)
T KOG2280|consen 515 RRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------------------ 576 (829)
T ss_pred HHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------------------
Confidence 77778999999999987644321101 133345666777778888888777777765431
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH-HHH----
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV-RNM---- 387 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf-~~m---- 387 (857)
+...|...| .+...|..+|.+..+.. |. ..|-+.|-...+..++-.+. +..
T Consensus 577 ~~s~l~~~l------~~~p~a~~lY~~~~r~~---~~---------------~~l~d~y~q~dn~~~~a~~~~q~~~~~~ 632 (829)
T KOG2280|consen 577 NRSSLFMTL------RNQPLALSLYRQFMRHQ---DR---------------ATLYDFYNQDDNHQALASFHLQASYAAE 632 (829)
T ss_pred HHHHHHHHH------HhchhhhHHHHHHHHhh---ch---------------hhhhhhhhcccchhhhhhhhhhhhhhhh
Confidence 122222222 22344555555554421 11 11222222222222211111 110
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCC----------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 003016 388 EQRGVVGTASVYYELACCLCNNGR----------WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQH 457 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~----------~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~ 457 (857)
...+..|+.. .....|++... ..+-+.+.+.+..+.+..-...|.+-.+.-+...|+..+|.++-.+
T Consensus 633 ~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~ 709 (829)
T KOG2280|consen 633 TIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD 709 (829)
T ss_pred hhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh
Confidence 0112233222 22333333322 1222334444444444444555677777888889999999999888
Q ss_pred HhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHH
Q 003016 458 MKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVY 537 (857)
Q Consensus 458 m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~ 537 (857)
.+- ||-..|--=+.+++..++|++-+++-..+. ...-|.-...+|.+.|+.++|...+
T Consensus 710 Fki---pdKr~~wLk~~aLa~~~kweeLekfAkskk-------------------sPIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 710 FKI---PDKRLWWLKLTALADIKKWEELEKFAKSKK-------------------SPIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred cCC---cchhhHHHHHHHHHhhhhHHHHHHHHhccC-------------------CCCCchhHHHHHHhcccHHHHhhhh
Confidence 876 899999999999999999998877766542 2566777889999999999999887
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003016 538 KGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAF 572 (857)
Q Consensus 538 ~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~ 572 (857)
.+. .+.. -.+.+|.++|++.+|.+.-
T Consensus 768 prv-----~~l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 768 PRV-----GGLQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcc-----CChH----HHHHHHHHhccHHHHHHHH
Confidence 753 2222 5678899999988887763
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.75 E-value=0.42 Score=46.77 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
..|..+...|...|++++|...|++......-.++ ...+..+...+.+.|++++|...+.......+.+...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566666677778888888877777652111121 34566777777778888888887777766434456666666666
Q ss_pred HHhcCC--------------HHHHHHHHHHHHH
Q 003016 476 YSRNDM--------------FSKAKELFEETTR 494 (857)
Q Consensus 476 ~~~~g~--------------~~~A~~lf~~M~~ 494 (857)
|...|+ +++|.+++.+...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 766665 4666777776655
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.68 E-value=0.22 Score=55.17 Aligned_cols=90 Identities=14% Similarity=-0.005 Sum_probs=71.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc
Q 003016 198 KGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (857)
Q Consensus 198 ~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~ 277 (857)
..+...|+++.|...|..+++..+ .+...|..+..+|.+.|++++|+..+++.... -+.+...|..+..+|...
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 445567889999999988887532 36778888888899999999999999988763 123577888888889999
Q ss_pred CCHHHHHHHHHHHHcC
Q 003016 278 GLLKELVKLIERMRQK 293 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~ 293 (857)
|++++|...|++....
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988774
No 171
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.62 E-value=0.16 Score=46.81 Aligned_cols=88 Identities=13% Similarity=0.167 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCC------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK------------RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~------------~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 256 (857)
|..++..+|-++++.|+++....+.+.+...... ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5678899999999999999999998877544321 2347899999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHh
Q 003016 257 DCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 257 ~~gi~pd~~t~~~li~~~~~ 276 (857)
.++++-+...|..|+.=...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 99998899999999975443
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.61 E-value=0.037 Score=46.98 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=39.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCC-CCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPL-KPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHAWLL 556 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~-~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~~Ll 556 (857)
.|+++.|+.+|+++.... . .|+...+-.+..++.+.|++++|..+++. . ...|+. .....+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~-------------~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a 65 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD-------------PTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLA 65 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH-------------CGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHC-------------CCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHH
Confidence 456666666666666543 1 11233333455566666666666666655 1 122222 2222333
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 003016 557 VEASRAGKCHLLEHAFDS 574 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~ 574 (857)
.+|...|++++|.++|++
T Consensus 66 ~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhc
Confidence 445566666666665543
No 173
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.51 E-value=0.038 Score=44.55 Aligned_cols=53 Identities=17% Similarity=0.334 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.|++++|.++|+.+....+-+...+..+..+|.+.|++++|.++++.+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45777777777777766555577777778888888888888888888777744
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.50 E-value=0.85 Score=52.93 Aligned_cols=146 Identities=12% Similarity=-0.000 Sum_probs=103.5
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC--------ChhHHHHH
Q 003016 184 SGLMFTEGQMLKLLKGLGDK-----GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG--------RPHEALRI 250 (857)
Q Consensus 184 ~g~~p~~~t~~~ll~a~~~~-----g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g--------~~~~A~~v 250 (857)
.+.+.|...|...+++.... ++...|..+|+++++..+ .....|..+..+|.... +...+.+.
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP----~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP----DFTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 45567888999998886543 237799999999987532 25566666555443321 12334444
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh
Q 003016 251 FNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330 (857)
Q Consensus 251 f~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~ 330 (857)
............+...|.++...+...|++++|...+++... ..|+...|..+...+...|+.
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-----------------L~ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-----------------LEMSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------cCCCHHHHHHHHHHHHHcCCH
Confidence 444332112334567888887777778999999999999987 457889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH
Q 003016 331 KGVFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~ 352 (857)
++|.+.+.+..+. .|...||
T Consensus 470 ~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 470 RLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred HHHHHHHHHHHhc--CCCCchH
Confidence 9999999998875 4554455
No 175
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.43 E-value=1.4 Score=50.14 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 627 ESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 627 ~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.|+-+.|+..+|.++++++....+.
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhhhhh
Confidence 3455667777777777777755443
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.42 E-value=0.63 Score=45.53 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLII 440 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~ 440 (857)
+..+...|...|++++|...|++..+.+..+. ...|..+...|.+.|++++|...+.+.... .| +...+..+..
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~ 114 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 47788889999999999999999876543332 357888999999999999999999998772 23 3445566666
Q ss_pred HHHcCCC
Q 003016 441 SSMDGGH 447 (857)
Q Consensus 441 a~~~~g~ 447 (857)
.+...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 6666665
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.42 E-value=4 Score=42.45 Aligned_cols=195 Identities=13% Similarity=0.052 Sum_probs=111.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.....+.+.|++++|.+.|+.+...-..+..... ..-.+..+|.+.+++++|...|++..+........-
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~----------a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQ----------VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3444566789999999999999875433322211 013567788899999999999998877654332333
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-------EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
|...+.|.+..... ...|...........| ..++..+|.-|-.+.-..+|...+..+... -...--.
T Consensus 107 ~a~Y~~g~~~~~~~---~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e~~ 180 (243)
T PRK10866 107 YVLYMRGLTNMALD---DSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR---LAKYELS 180 (243)
T ss_pred HHHHHHHHhhhhcc---hhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH---HHHHHHH
Confidence 54445554421110 0011110000000011 123455666666666677777666666541 1112224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHH
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGM 540 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m 540 (857)
+...|.+.|.+..|..=|+.+.+.-+ +..........++.+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp-----------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYP-----------DTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCC-----------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 55668888888888888888887651 02223445566777888888888887766544
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.32 E-value=0.39 Score=54.40 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
...-+++|++.| -.||.+.. ...|+-.|.+.+|-++|.+- |..
T Consensus 619 li~EL~~~k~rg---------------e~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e---------------- 661 (1081)
T KOG1538|consen 619 LISELEERKKRG---------------ETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE---------------- 661 (1081)
T ss_pred HHHHHHHHHhcC---------------CCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch----------------
Confidence 334456677776 66776543 23356677788887777643 322
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH-------Hh--h-----cCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH------
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRN-------ME--Q-----RGV-VGTASVYYELACCLCNNGRWQDAMLVVEK------ 421 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~-------m~--~-----~~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~------ 421 (857)
|--+.+|.....++.|.++... |. + +++ .|- +....+...|+.++|..+.-+
T Consensus 662 --nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~ 734 (1081)
T KOG1538|consen 662 --NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDM 734 (1081)
T ss_pred --hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHH
Confidence 4444555555555555554431 11 1 011 121 123345556777776655321
Q ss_pred ---HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 422 ---IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 422 ---m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+-. .--..+..+.-.+-..+.+...+..|-++|..|-. ..+++++....++|.+|..+-+...+
T Consensus 735 lidI~r-kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 735 LIDIAR-KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHh-hcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence 111 11123334555555556677888899999999865 35678889999999999999888765
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.22 E-value=5.2 Score=42.64 Aligned_cols=25 Identities=12% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~ 341 (857)
|.-.-..|-..+++++|.+.|....
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 4444555666777777777776654
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.04 E-value=0.39 Score=46.77 Aligned_cols=96 Identities=11% Similarity=0.114 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
...|..+...+...|++++|+..|++......-.+ ...++..+-..+...|+.++|...++......+....+++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 44577777788888999999999998876221111 23467888888889999999999998887744445566777777
Q ss_pred HHH-------hcCCHHHHHHHHHH
Q 003016 475 VYS-------RNDMFSKAKELFEE 491 (857)
Q Consensus 475 ~~~-------~~g~~~~A~~lf~~ 491 (857)
.|. +.|+++.|...+.+
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 777 77787755555443
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.4 Score=50.09 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
-|...|-.|-..|.+.|+.+.|..-|..-.+..|-.|+... |...+..-+......++..+|+++...-+-|+.+-.-|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 46667999999999999999999999999887777777654 44444444455567789999999998666788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
-..+...|++.+|...|+.|.+.. |....+..+|..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~l---------------p~~~~rr~~ie~ 269 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLL---------------PADDPRRSLIER 269 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC---------------CCCCchHHHHHH
Confidence 899999999999999999999865 666677776654
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.99 E-value=0.94 Score=41.32 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=43.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCCc--HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC---CHHHHHHHHHHHHh
Q 003016 404 CCLCNNGRWQDAMLVVEKIKSLRHSKPL--EITFTGLIISSMDGGHIDDCISIFQHMKDHCEP---NIGTVNAMLKVYSR 478 (857)
Q Consensus 404 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p---~~~~~~~li~~~~~ 478 (857)
.++-..|+.++|+.+|++... .|.... ...+..+-+.+...|++++|..+|+......+. +......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 344455666666666665555 444333 123444555555666666666666655542211 12222222334455
Q ss_pred cCCHHHHHHHHHHH
Q 003016 479 NDMFSKAKELFEET 492 (857)
Q Consensus 479 ~g~~~~A~~lf~~M 492 (857)
.|+.++|++.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 56666666666544
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.89 E-value=0.11 Score=41.79 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=48.9
Q ss_pred HhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
...|++++|.++|+.++...+ .+..++-.+..+|.+.|++++|..+++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP----DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT----TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHHH
Confidence 356888999999998877532 37778888999999999999999999998874 47755565554
No 184
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.85 E-value=0.44 Score=43.88 Aligned_cols=93 Identities=9% Similarity=0.010 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc--CCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL--SGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~--~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
|..++.++|.++++.|+.+....+.+..-.-....-..- ...+++..|+..+..+++.+|+..+++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888888765532210000000 111233444444444444444444444444444444332
Q ss_pred c-CCCCCHHHHHHHHH
Q 003016 543 S-GCQLDQTKHAWLLV 557 (857)
Q Consensus 543 ~-g~~pd~~t~~~Ll~ 557 (857)
. +++.+..++..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2 33333444444443
No 185
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.84 E-value=0.7 Score=43.75 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCC
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL 279 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~ 279 (857)
....|+.+.+...+..++..-.....++... ..-......-++.+.- .....++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~~--------~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELYL--------DALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHHH--------HHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccC
Confidence 3456777888887777765432222222111 1112222333333322 356667778888999
Q ss_pred HHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 003016 280 LKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR-----KSGLKPSAATY 352 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~pd~~t~ 352 (857)
+++|..+...+... -+-|...|..+|.+|...|+...|.++|+.+. +.|+.|+..|-
T Consensus 78 ~~~a~~~~~~~l~~----------------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 78 YEEALRLLQRALAL----------------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHH----------------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 99999999998875 35578899999999999999999999998874 35899988773
No 186
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.94 Score=46.15 Aligned_cols=136 Identities=14% Similarity=0.022 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
.-++++..+.-.|.+.-...++.+..+.. .+-++.....+.+.-.+.|+.+.|...|+...+..-
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~ 243 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYY---------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ 243 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhC---------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 45667777777788888888888888765 677888888999999999999999999998876655
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
..|..+++.++. .+.-..|.-.+++..|...|++....+.. |...-|.=.-+..-.|+..+|++..+.|..
T Consensus 244 kL~~~q~~~~V~-------~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 244 KLDGLQGKIMVL-------MNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhccchhHHHH-------hhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556555532221 33444566678888999999888877643 333344444455567889999999998876
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.77 E-value=0.83 Score=44.45 Aligned_cols=93 Identities=12% Similarity=0.080 Sum_probs=68.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVG--TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~--d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 441 (857)
|..+...+...|++++|...|+........+ ...+|..+...|...|++++|+..++..... .+....++..+...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i 115 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 4777888889999999999999987553222 2357888999999999999999999998762 22223445555555
Q ss_pred HH-------cCCCHHHHHHHHHHH
Q 003016 442 SM-------DGGHIDDCISIFQHM 458 (857)
Q Consensus 442 ~~-------~~g~~~~A~~if~~m 458 (857)
+. ..|+++.|...+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 65 778887666665544
No 188
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.70 E-value=1.1 Score=42.70 Aligned_cols=97 Identities=12% Similarity=0.051 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
....-.+-..+...|++++|..+|+-..... |... -|-.|-.+|-..|++++|+..|.......
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D---------------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD---------------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4445556666788999999999999988743 7554 45566666666799999999999988765
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
+-|+..+-.+-.++...|+.+.|.+.|+.....
T Consensus 100 -~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 100 -IDAPQAPWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 245677888888899999999999999987665
No 189
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.56 E-value=0.42 Score=49.03 Aligned_cols=118 Identities=12% Similarity=0.084 Sum_probs=74.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVP-----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+.|..+|-+++..+.. .+.++-....++.|.+.|+.-|..+| +.||+.+-|-
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vY------------k~LlnvfPKg----------- 120 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVY------------KGLLNVFPKG----------- 120 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHH------------HHHHHhCccc-----------
Confidence 6788889888888764 46788888889999999999999999 6666544332
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCH-HHHHHHHHHHhh
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHI-DDCISIFQHMKD 460 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~-~~A~~if~~m~~ 460 (857)
...|... +....--|-+ +-+-++.++++|.. .|+.||..+-..|++++.+.+.. .+..++.-.|.+
T Consensus 121 -----kfiP~nv-fQ~~F~HYP~--QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 121 -----KFIPQNV-FQKVFLHYPQ--QQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred -----ccccHHH-HHHHHhhCch--hhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2233111 1111111211 22346667777777 67777777777777777665542 344444445544
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.55 E-value=1.4 Score=46.10 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ-TKHA 553 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~-~t~~ 553 (857)
+.+.+++.+|+..|.+.+. +.| |.+-|..--.+|++.|.++.|.+-.+..+. +.|.. .+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---------------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~ 153 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---------------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYG 153 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---------------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHH
Confidence 3455666666666666665 334 444455555666666666666655544443 33432 3666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT 588 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~ 588 (857)
.|-.+|...|++++|.+.|+...+ +.|+-.+|-
T Consensus 154 RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 154 RLGLAYLALGKYEEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHH
Confidence 666666666666666666666554 455555544
No 191
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.52 E-value=6.7 Score=40.77 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=98.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDI-AAY---HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~-~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
.....+.+.|+++.|.+.|+.+... .|+. ..- -.+..+|-+.+++++|...|++..+.-.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~---yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P------------- 100 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR---YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP------------- 100 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-------------
Confidence 3444556688999999999998874 2432 222 3455677888999999999988877541
Q ss_pred CCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHH
Q 003016 309 VLEPDLVVYNAVLNACVP--S---------------HQ---WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLV 368 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~--~---------------g~---~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li 368 (857)
-.|+ .-|...+.+.+. . .+ ...|+..|+. +|
T Consensus 101 -~~~~-~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------------------li 151 (243)
T PRK10866 101 -THPN-IDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------------------LV 151 (243)
T ss_pred -CCCc-hHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------------------HH
Confidence 1222 233333333321 1 01 1233333444 44
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHcCCC
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-HSKPLEITFTGLIISSMDGGH 447 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-g~~pd~~t~~~ll~a~~~~g~ 447 (857)
+-|=...-..+|...+..+.++=-. .--.+..-|.+.|.+.-|..-|+.+.+.. +.+........++.+|.+.|.
T Consensus 152 ~~yP~S~ya~~A~~rl~~l~~~la~----~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 152 RGYPNSQYTTDATKRLVFLKDRLAK----YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHCcCChhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 4444444444554444333221000 01123455777777777777777776522 223334456677777878888
Q ss_pred HHHHHHHHHHHh
Q 003016 448 IDDCISIFQHMK 459 (857)
Q Consensus 448 ~~~A~~if~~m~ 459 (857)
.++|..+...+.
T Consensus 228 ~~~a~~~~~~l~ 239 (243)
T PRK10866 228 NAQADKVAKIIA 239 (243)
T ss_pred hHHHHHHHHHHh
Confidence 887777666554
No 192
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.51 E-value=0.44 Score=49.61 Aligned_cols=118 Identities=12% Similarity=0.105 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHc
Q 003016 484 KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRA 562 (857)
Q Consensus 484 ~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~ 562 (857)
+...+-++++..| .-....+++++|+..|.+.++ +.|+.. -|..=-.+|++.
T Consensus 76 e~~~~AE~LK~eG-------------------------N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~L 128 (304)
T KOG0553|consen 76 EDKALAESLKNEG-------------------------NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKL 128 (304)
T ss_pred hHHHHHHHHHHHH-------------------------HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHh
Confidence 5666667777777 456778999999999999997 566554 455556669999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhc
Q 003016 563 GKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDR 632 (857)
Q Consensus 563 G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~ 632 (857)
|.++.|++-.+.... +.|+ ..+|..|-.+|...|++++|++.|++-+ .+.|+..+|..=|......
T Consensus 129 g~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL--eldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 129 GEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL--ELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred cchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh--ccCCCcHHHHHHHHHHHHH
Confidence 999999998888776 4454 4689999999999999999999999866 6788888887776655443
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.50 E-value=7.8 Score=41.20 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=130.4
Q ss_pred HHcCCHHHHHHHHHHHhhcC--CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------CCCCCcH----
Q 003016 372 WEEGKINEAVAAVRNMEQRG--VVGT------ASVYYELACCLCNNGRWQDAMLVVEKIKSL-------RHSKPLE---- 432 (857)
Q Consensus 372 ~k~g~~~~A~~lf~~m~~~~--~~~d------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-------~g~~pd~---- 432 (857)
.+.|+++.|..++.+..... ..|+ ...||.-...+.+..+++.|...+++..+. ....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 57899999999998876543 2232 223554444444443888887776654431 1233333
Q ss_pred -HHHHHHHHHHHcCCCHH---HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 433 -ITFTGLIISSMDGGHID---DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 433 -~t~~~ll~a~~~~g~~~---~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
.++..++.+|...+..+ +|.++++.+.........++-.-+..+.+.++.+++.+++.+|...-
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~------------ 151 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV------------ 151 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc------------
Confidence 35677788888777655 45566666655433345566566777777899999999999998753
Q ss_pred CCCCCHhHhhhhHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHH---HHHc------CCHHHHHHHHHHH
Q 003016 509 PLKPDEYTYSSMLEASATA--HQWEYFEYVYKGMALSGCQLDQT--KHAWLLVE---ASRA------GKCHLLEHAFDSL 575 (857)
Q Consensus 509 ~~~pd~~t~~~ll~a~~~~--g~~~~a~~l~~~m~~~g~~pd~~--t~~~Ll~~---~~~~------G~~~~A~~~~~~m 575 (857)
.-....|..++..+... .....+...+..++...+.|... .-..++.. .... ++++....+++.+
T Consensus 152 --~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 152 --DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred --ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 21345566666655222 33456667777777666666553 11122222 1121 1255555566644
Q ss_pred HHC-CCCCCHHHHH---HH----HHHHHHcCCHHHHHHHHHH
Q 003016 576 LEA-GEIPHPLFFT---EM----LIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 576 ~~~-gi~p~~~~~~---~l----i~~~~~~g~~~~A~~l~~~ 609 (857)
.+. +.+.+..+-. ++ ...+.+++++++|.++|+-
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 333 2222322211 22 3456677999999998874
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.42 E-value=0.18 Score=40.23 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+...|++++|...|+.+.+..+-+...|..+..++.+.|++++|...|++..+..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 455667777777777777776555567777777777778888888888888776643
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=1.9 Score=44.10 Aligned_cols=129 Identities=9% Similarity=-0.009 Sum_probs=65.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH---
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS--- 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a--- 441 (857)
+.+++...-.|.+.-...++.+..+++..-+......+...-.+.|+.+.|...|++..+ ..-+.|..+++.++..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek-~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK-VTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH-HHhhhhccchhHHHHhhhh
Confidence 445555555555555666666666655555555555555556666666666666665554 3333344444333321
Q ss_pred --HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 442 --SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 442 --~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
|.-..++-.|.+.|.++...-..|+..-|.-.-+..-.|+..+|++..+.|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22234455555555555543333444444333333334555666666666654
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.15 E-value=1.8 Score=39.54 Aligned_cols=107 Identities=17% Similarity=0.168 Sum_probs=72.9
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFT--EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA 241 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~--~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~ 241 (857)
.+-..|..++|+.+|++-...|.... ...+..+-+.+...|++++|..+++......+... -+..+...+..++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~-~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE-LNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHHC
Confidence 34456888899999999888886644 23566677778888999999999988876432211 1222333344467778
Q ss_pred CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 242 GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 242 g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
|+.++|...+-.... ++...|.--|..|++
T Consensus 89 gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 89 GRPKEALEWLLEALA-----ETLPRYRRAIRFYAD 118 (120)
T ss_pred CCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 999999888876655 455567666666654
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.99 E-value=7.6 Score=39.09 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=109.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 320 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
....+...|++.+|...|+.+...-.......- ..-.++.+|.+.|+++.|...|++..+.-......-+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~----------A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQ----------AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHH----------HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 344567889999999999999876322111110 1246788899999999999999998765433222224
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
...+.|.+........+ . ....+. ..+|..+|.-|-.+....+|......+... =...--.+..
T Consensus 81 A~Y~~g~~~~~~~~~~~------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~~ia~ 149 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGIL------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHELYIAR 149 (203)
T ss_dssp HHHHHHHHHHHHHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccch------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 44444443322221111 0 000111 234677788888888888888877777651 1222334677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHH
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFE 534 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~ 534 (857)
.|.+.|.+..|..-|+.+.+.- |+. .....++.++.+.|..+.+.
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~y---------------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENY---------------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHS---------------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC---------------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8999999999999999999876 543 35567778888888777443
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.84 E-value=19 Score=43.19 Aligned_cols=221 Identities=14% Similarity=0.139 Sum_probs=143.1
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGL--GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~--~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~ 244 (857)
..+++..|+.....+.+.. ||. .|..+++++ .+.|..++|..+++.....+. .|..+...+-..|-..++.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhh
Confidence 5677888988888877653 443 455566664 567999999999887654322 2888999999999999999
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHH
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNAC 324 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~ 324 (857)
++|..+|++.... .|+..-...+..+|++.+.+.+-.+.=-+|.+. .+.+...|=++++..
T Consensus 94 d~~~~~Ye~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~----------------~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 94 DEAVHLYERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN----------------FPKRAYYFWSVISLI 154 (932)
T ss_pred hHHHHHHHHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------CCcccchHHHHHHHH
Confidence 9999999999864 588888888889999998886644444444332 344555555566655
Q ss_pred HhcC----------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH-HHhhcCCC
Q 003016 325 VPSH----------QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR-NMEQRGVV 393 (857)
Q Consensus 325 ~~~g----------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~-~m~~~~~~ 393 (857)
.+.. -..-|...++.+.+.+-.-.... - .-.-....-..|+.++|..++. ...++-..
T Consensus 155 lqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a--E---------~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~ 223 (932)
T KOG2053|consen 155 LQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA--E---------IILYLLILELQGKYQEALEFLAITLAEKLTS 223 (932)
T ss_pred HHhccCCcccccchhHHHHHHHHHHHhccCCccchHH--H---------HHHHHHHHHhcccHHHHHHHHHHHHHHhccc
Confidence 4421 12334555555555431111110 0 0111223345678888888883 44444444
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.+...-+--+..+...++|.+..++-.++..
T Consensus 224 ~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 224 ANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred cchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4444445556667777888887777777766
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.79 E-value=1.4 Score=48.24 Aligned_cols=147 Identities=13% Similarity=0.092 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH-HHHHH
Q 003016 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRG-VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT-FTGLI 439 (857)
Q Consensus 362 ~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll 439 (857)
.+|..+|+.-.+..-++.|+.+|-+..+.+ +.++..+++++|.-++. |+...|..+|+-=.. . -||... ..-.+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~-f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--K-FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--h-CCCchHHHHHHH
Confidence 357889999899999999999999999988 66788899999987765 677789999886443 2 244433 35566
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHh
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTY 517 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~--~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~ 517 (857)
.-+...++-+.|+.+|+.....+..+ -..|..||+-=..-|+...|..+=+.|.. +.|...+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e---------------~~pQen~~ 538 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE---------------LVPQENLI 538 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH---------------HcCcHhHH
Confidence 77788899999999999766644445 67899999999999999999999888887 44776666
Q ss_pred hhhHHHHHhc
Q 003016 518 SSMLEASATA 527 (857)
Q Consensus 518 ~~ll~a~~~~ 527 (857)
....+-|+-.
T Consensus 539 evF~Sry~ik 548 (660)
T COG5107 539 EVFTSRYAIK 548 (660)
T ss_pred HHHHHHHhhh
Confidence 6666655543
No 200
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.72 E-value=6.9 Score=38.08 Aligned_cols=128 Identities=18% Similarity=0.203 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 261 YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 261 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
-|++..--.|..+..+.|+..+|...|++..... ..-|....-.+-++....+++..|...++.+
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~---------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGI---------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4777777788889999999999999999887654 6667777777888888889999999998888
Q ss_pred HHcC---CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 003016 341 RKSG---LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAML 417 (857)
Q Consensus 341 ~~~g---~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~ 417 (857)
.+.. -.||.. -.+.+.|...|...+|+.-|+.....-.-|....|. -..+.+.|+.++|..
T Consensus 151 ~e~~pa~r~pd~~--------------Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~a 214 (251)
T COG4700 151 MEYNPAFRSPDGH--------------LLFARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANA 214 (251)
T ss_pred hhcCCccCCCCch--------------HHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHH
Confidence 7753 455554 346677788888888888888776543333332222 223456666555544
Q ss_pred HH
Q 003016 418 VV 419 (857)
Q Consensus 418 l~ 419 (857)
-+
T Consensus 215 q~ 216 (251)
T COG4700 215 QY 216 (251)
T ss_pred HH
Confidence 33
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.56 E-value=0.27 Score=39.17 Aligned_cols=55 Identities=24% Similarity=0.199 Sum_probs=28.0
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
..+.+.|++++|...|+...+. .+-+...|..+..++.+.|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555542 112344555555555555555555555555543
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.55 E-value=0.41 Score=45.36 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH---
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL--- 542 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~--- 542 (857)
.+...++..+...|++++|..+...+.... | |...|..+|.++...|+...|.++|+.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---------------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 355677778888999999999999988854 5 778889999999999999999998887753
Q ss_pred --cCCCCCHHH
Q 003016 543 --SGCQLDQTK 551 (857)
Q Consensus 543 --~g~~pd~~t 551 (857)
.|+.|+..+
T Consensus 128 ~elg~~Ps~~~ 138 (146)
T PF03704_consen 128 EELGIEPSPET 138 (146)
T ss_dssp HHHS----HHH
T ss_pred HHhCcCcCHHH
Confidence 378787664
No 203
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.36 E-value=16 Score=40.62 Aligned_cols=389 Identities=11% Similarity=0.044 Sum_probs=206.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHH--H
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDL--KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL--G 275 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~--~ 275 (857)
+-+.+++.+|..+|..+.+....... ...+..+.+|++|... +.+..........+.. | ...|-.+..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF---G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHH
Confidence 34568889999999888765433210 1245567788888754 4555555566666543 2 33455555443 3
Q ss_pred hcCCHHHHHHHHHHHHcC--CC-hhhhhh-hhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CC
Q 003016 276 QVGLLKELVKLIERMRQK--PS-KRIKNM-HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL----KP 347 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~--g~-~~l~~m-~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p 347 (857)
+.+.+++|++.+..-... +. .++++. ..+ .-+|-.-=+..+.+....|.+.+++.++++|...=+ .-
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~-----l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ-----LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHH-----HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 668888888877665443 21 111110 011 123333445566777889999999999988876433 36
Q ss_pred CHHHHHHHHHHHH---------------HhHHHHHHHHHHHcCCHHH---------HHHHHHH-----------------
Q 003016 348 SAATYGLAMESYR---------------RCLLKVLVRAFWEEGKINE---------AVAAVRN----------------- 386 (857)
Q Consensus 348 d~~t~~~ll~~~~---------------~~~~~~Li~~y~k~g~~~~---------A~~lf~~----------------- 386 (857)
+..+|+.++-.++ ..-|--+|-.|-+.=+.-+ +.+++..
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 7788876443333 1122233333333211111 1122211
Q ss_pred -----HhhcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----CcHHHHHHHHHHHHcCCCHHHHHHHHH
Q 003016 387 -----MEQRGVVGTAS-VYYELACCLCNNGRWQDAMLVVEKIKSLRHSK----PLEITFTGLIISSMDGGHIDDCISIFQ 456 (857)
Q Consensus 387 -----m~~~~~~~d~~-t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~----pd~~t~~~ll~a~~~~g~~~~A~~if~ 456 (857)
-.+.-+.|+-. +...|+..+.+ +.+++..+-+.+-. ..+. --..+|..++..+.+.++...|.+.+.
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~-~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS-SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 12222334311 12233333333 44444444443333 1111 123467788888888777777777665
Q ss_pred HHhh---C------C-----------CCCHHHHHHH--------------------HHH-------HHhcCC-HHHHHHH
Q 003016 457 HMKD---H------C-----------EPNIGTVNAM--------------------LKV-------YSRNDM-FSKAKEL 488 (857)
Q Consensus 457 ~m~~---~------~-----------~p~~~~~~~l--------------------i~~-------~~~~g~-~~~A~~l 488 (857)
-+.. + + .-|-..++.+ ++- +-+.|. -++|+++
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 5432 0 0 0122222111 111 112333 5677777
Q ss_pred HHHHHHcCCCCccccCCCCCCCCC-CHhHhh----hhHHHHHhc---CCHHHHHHHHHHHHHcCCCCCH----HHHHHHH
Q 003016 489 FEETTRANSSGYTFLSGDGAPLKP-DEYTYS----SMLEASATA---HQWEYFEYVYKGMALSGCQLDQ----TKHAWLL 556 (857)
Q Consensus 489 f~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~----~ll~a~~~~---g~~~~a~~l~~~m~~~g~~pd~----~t~~~Ll 556 (857)
++.... +.| |...-| .+=.+|... ..+..-..+-+-+.+.|+.|-. ..-|.|-
T Consensus 403 Lk~il~---------------ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 403 LKLILQ---------------FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHHHHH---------------hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 777765 334 222222 222333333 2333333444444556777643 3667777
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHH
Q 003016 557 VE--ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWT 623 (857)
Q Consensus 557 ~~--~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~ 623 (857)
+| +...|++.++.-+-.-+.+ +.|++.+|..+--.+....++++|.+.+..+ .|+..++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d 529 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD 529 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence 77 4567888888776655554 6788888887666667778999999999877 34555544
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.29 E-value=20 Score=41.69 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCc-CC-----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCC
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLK-DK-----RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLY 261 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~-~~-----~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~ 261 (857)
|.+..|..+.......-.++.|...|-..-... .+ +...+...-.+=|.+| -|++++|.++|-+|-+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~dr----- 762 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADR----- 762 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccch-----
Confidence 666666666655555555555555553321000 00 0000111222223333 3788888888888766
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003016 262 PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 262 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~ 341 (857)
+|. .|..+.+.|++-.+.++++. .|+.. .-..-...|+.+-..++....|++|.+.+..-.
T Consensus 763 rDL-----Aielr~klgDwfrV~qL~r~---g~~d~-----------dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 763 RDL-----AIELRKKLGDWFRVYQLIRN---GGSDD-----------DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhh-----hHHHHHhhhhHHHHHHHHHc---cCCCc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 332 34555566666665555432 11000 001113456666666666666766666665432
Q ss_pred HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 342 KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 342 ~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
.. ...+.+|.+...+++-+.+-..+++.. ...-.|..++...|.-++|.+.|-+
T Consensus 824 ~~---------------------e~~~ecly~le~f~~LE~la~~Lpe~s-----~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 824 DT---------------------ENQIECLYRLELFGELEVLARTLPEDS-----ELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ch---------------------HhHHHHHHHHHhhhhHHHHHHhcCccc-----chHHHHHHHHHhhchHHHHHHHHHh
Confidence 11 234444444444444444444443322 1233445555555555555554433
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH--------------HHHHHHHHhcCCHHHHHH
Q 003016 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV--------------NAMLKVYSRNDMFSKAKE 487 (857)
Q Consensus 422 m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~--------------~~li~~~~~~g~~~~A~~ 487 (857)
-.. | -+.+..|....++.+|.++-+...- |.+.+. ---|..+-+.|+.-.|-+
T Consensus 878 ~s~-----p-----kaAv~tCv~LnQW~~avelaq~~~l---~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daar 944 (1189)
T KOG2041|consen 878 RSL-----P-----KAAVHTCVELNQWGEAVELAQRFQL---PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAAR 944 (1189)
T ss_pred ccC-----c-----HHHHHHHHHHHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHH
Confidence 211 1 1223344444445444444333221 222111 112455667777777777
Q ss_pred HHHHHHHcC
Q 003016 488 LFEETTRAN 496 (857)
Q Consensus 488 lf~~M~~~g 496 (857)
++.+|.+..
T Consensus 945 ll~qmae~e 953 (1189)
T KOG2041|consen 945 LLSQMAERE 953 (1189)
T ss_pred HHHHHhHHH
Confidence 777776543
No 205
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.98 E-value=0.4 Score=38.66 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSH-QWKGVFWVFKQLR 341 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g-~~~~A~~l~~~m~ 341 (857)
+..+|..+...+.+.|++++|+..|.+..+.. +-+...|..+-.+|...| ++++|++.++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----------------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----------------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----------------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 46788899999999999999999999988753 446778888888899999 7999999988876
Q ss_pred Hc
Q 003016 342 KS 343 (857)
Q Consensus 342 ~~ 343 (857)
+.
T Consensus 66 ~l 67 (69)
T PF13414_consen 66 KL 67 (69)
T ss_dssp HH
T ss_pred Hc
Confidence 53
No 206
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.89 E-value=3.6 Score=39.23 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=60.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASV 398 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t 398 (857)
.+-..+...|++++|..+|+.+... .|....| |-.|--+|-..|++++|...|......++ -|...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y-----------~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~ 105 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDY-----------WFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQA 105 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH-----------HHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchH
Confidence 3444456677777777777777653 5666655 56677777777777777777777665553 34444
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
+-.+-.++...|+.+.|..-|+....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666777777777777777766555
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.61 E-value=25 Score=40.97 Aligned_cols=191 Identities=13% Similarity=0.113 Sum_probs=103.5
Q ss_pred cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003016 203 KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKE 282 (857)
Q Consensus 203 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~ 282 (857)
.|.+++|.+++-.+-+ +| ..|.++.+.|++-...++++.=.....-.--...|+.+...++....+++
T Consensus 747 ~g~feeaek~yld~dr-------rD-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~ 814 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADR-------RD-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEE 814 (1189)
T ss_pred hcchhHhhhhhhccch-------hh-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888765522 23 34567777788776666654321110000114577777777777777777
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRC 362 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 362 (857)
|.+.|..-... ...+.++.+..++++-..+-..+ +-|....
T Consensus 815 A~~yY~~~~~~------------------------e~~~ecly~le~f~~LE~la~~L-----pe~s~ll---------- 855 (1189)
T KOG2041|consen 815 AAKYYSYCGDT------------------------ENQIECLYRLELFGELEVLARTL-----PEDSELL---------- 855 (1189)
T ss_pred HHHHHHhccch------------------------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchH----------
Confidence 77777654211 12344444444444433333222 1222222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH-------
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF------- 435 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~------- 435 (857)
-.+.+++...|.-++|.+.|-+-.. | -+.+..|....+|.+|.++-+..+- |...|.
T Consensus 856 --p~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l-----~qv~tliak~aaq 919 (1189)
T KOG2041|consen 856 --PVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQL-----PQVQTLIAKQAAQ 919 (1189)
T ss_pred --HHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHH
Confidence 5666777777777777776654321 1 1234556666777777776544322 222221
Q ss_pred -------HHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 436 -------TGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 436 -------~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.--|..+.+.|..-+|-+++.+|.+
T Consensus 920 ll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 920 LLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1123445667777777777777754
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.42 E-value=0.56 Score=37.75 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND-MFSKAKELFEETTR 494 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g-~~~~A~~lf~~M~~ 494 (857)
|..+-..+...|++++|...|....+-.+.+...|..+-.+|.+.| ++++|++.|++..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3344444444444444444444444422334455555555555555 45555555555443
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.35 E-value=1.9 Score=45.26 Aligned_cols=96 Identities=9% Similarity=0.060 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
...|..-+..+.+.|++++|...|+.+.... |+. ..+-.+..+|...|+++.|...|..+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---------------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---------------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---------------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456666666677788999999999888755 543 244556667777788888888888877
Q ss_pred HcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 542 LSGCQLD----QTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 542 ~~g~~pd----~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
+. .|+ ...+..+...|...|+.++|..+|+.+.+.
T Consensus 208 ~~--yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 208 KN--YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HH--CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 122 223333444566777777777777776653
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=19 Score=39.51 Aligned_cols=151 Identities=13% Similarity=0.029 Sum_probs=93.7
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhh
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK--VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSS 519 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~--~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ 519 (857)
+.-.|+.++|.++--.+.+--..+ .+...+. ++--.++.+.|...|.+-...+ ||...--+
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld---------------pdh~~sk~ 241 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD---------------PDHQKSKS 241 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccch--hHHHHhcccccccccchHHHHHHHhhhhccC---------------hhhhhHHh
Confidence 345677777776666655521112 2222222 2334567788888888777654 65543222
Q ss_pred hH-------------HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003016 520 ML-------------EASATAHQWEYFEYVYKGMALS---GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH 583 (857)
Q Consensus 520 ll-------------~a~~~~g~~~~a~~l~~~m~~~---g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~ 583 (857)
+- +-..+.|++..|.+.|.+.+.. ...|+...|...-....+.|+..+|..--+...+.. +
T Consensus 242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~ 318 (486)
T KOG0550|consen 242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---S 318 (486)
T ss_pred HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---H
Confidence 21 2245679999999999998852 344445566666666789999999998887776532 2
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHhhh
Q 003016 584 PLFFTEMLIQAIV--QSNYEKAVALINAMAY 612 (857)
Q Consensus 584 ~~~~~~li~~~~~--~g~~~~A~~l~~~M~~ 612 (857)
..++..+.++-|. .+.+++|++-+++..+
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344445554444 3889999998888543
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.20 E-value=1.8 Score=45.54 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
...|+..+..+.+.|++++|...|+.+... .|+. ..+-.+..+|...|++++|...|..+.....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP-------- 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP-------- 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--------
Confidence 456777777667778999999999998875 3543 4677788888999999999999999876420
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
........+-.+...+...|+.+.|..+|+.+.+.-
T Consensus 212 -----~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 212 -----KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred -----CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 011224445555666778899999999999888763
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.12 E-value=18 Score=39.77 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=50.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCccccCCCCCC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH----CEPNIGTVNAMLKVYSR---NDMFSKAKELFEETTRANSSGYTFLSGDGAP 509 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~----~~p~~~~~~~li~~~~~---~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~ 509 (857)
.++-+|....+++...++.+.+..- .......--...-++-+ .|+.++|++++..+....
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~------------- 212 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD------------- 212 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-------------
Confidence 4444577777777777777777662 11112222233334445 678888888887754443
Q ss_pred CCCCHhHhhhhHHHHHhc---------CCHHHHHHHHHHHH
Q 003016 510 LKPDEYTYSSMLEASATA---------HQWEYFEYVYKGMA 541 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~---------g~~~~a~~l~~~m~ 541 (857)
-.++..||..+...|-.. ...+.|...|.+.-
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF 253 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGF 253 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 345555665544443321 23556666665544
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.10 E-value=5.6 Score=37.22 Aligned_cols=126 Identities=10% Similarity=0.126 Sum_probs=90.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+|..+.+.+.......+++.+...+. .+....|.+|..|++... .+.+..+.. ..+.+....++..|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 5678888888999999999999888774 677789999999998753 444444442 1334555668888999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN-DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
.+.++++.-++..+.. |...+..+... ++.+.|.+++.+- -+...|..++..
T Consensus 82 ~~l~~~~~~l~~k~~~--------~~~Al~~~l~~~~d~~~a~~~~~~~-------------------~~~~lw~~~~~~ 134 (140)
T smart00299 82 AKLYEEAVELYKKDGN--------FKDAIVTLIEHLGNYEKAIEYFVKQ-------------------NNPELWAEVLKA 134 (140)
T ss_pred cCcHHHHHHHHHhhcC--------HHHHHHHHHHcccCHHHHHHHHHhC-------------------CCHHHHHHHHHH
Confidence 9999999988888754 33344444445 7888888887752 245577777766
Q ss_pred HHh
Q 003016 524 SAT 526 (857)
Q Consensus 524 ~~~ 526 (857)
|..
T Consensus 135 ~l~ 137 (140)
T smart00299 135 LLD 137 (140)
T ss_pred HHc
Confidence 543
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.08 E-value=1 Score=46.34 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH-HHHHHHHHHHh
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI-NEAVAAVRNME 388 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~-~~A~~lf~~m~ 388 (857)
+-++.++++|...|+.||..+- ..|++++.+.+.. .+..++.-.|.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e------------~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIE------------DILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHH------------HHHHHHhccccccHHHHHHHHHhhh
Confidence 4478899999999999999987 7788888877653 33444444444
No 215
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.07 E-value=35 Score=42.47 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCCCHhHhhhhHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 003016 510 LKPDEYTYSSMLEASATA----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL 585 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~----g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~ 585 (857)
.+||...+..+..+|+.+ +.+++|.-+|+..-+ ..--+.+|-.+|+|.+|+.+-..+... -+..
T Consensus 931 y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~ 998 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDEL 998 (1265)
T ss_pred eccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHH
Confidence 457777777776666554 566666655553211 122356677778888887777766432 1221
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 586 --FFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 586 --~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+-..|+.-+...+++-+|-++..+..
T Consensus 999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 999 VILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 22567777888888888888877763
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.67 E-value=6.6 Score=44.64 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=104.7
Q ss_pred HHHhcCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003016 323 ACVPSHQWKGVFWVFK-QLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 401 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~-~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~ 401 (857)
...-.++++.+.++.+ .-.-..++++. .+.++..+-+.|..+.|+++-..-..+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~--------------~~~i~~fL~~~G~~e~AL~~~~D~~~r----------- 324 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQ--------------GQSIARFLEKKGYPELALQFVTDPDHR----------- 324 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHH--------------HHHHHHHHHHTT-HHHHHHHSS-HHHH-----------
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhH--------------HHHHHHHHHHCCCHHHHHhhcCChHHH-----------
Confidence 3455788888766664 11111122121 278899999999999999886543322
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
.....+.|+++.|.++- .-..+...|..|-....+.|+++.|.+.|..... |..|+-.|.-.|+
T Consensus 325 -FeLAl~lg~L~~A~~~a-------~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 325 -FELALQLGNLDIALEIA-------KELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD 388 (443)
T ss_dssp -HHHHHHCT-HHHHHHHC-------CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred -hHHHHhcCCHHHHHHHH-------HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC
Confidence 33456889999998873 3445778999999999999999999999998876 7888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
.+.-.++-+.....| -++....++.-.|+.++..+++.+
T Consensus 389 ~~~L~kl~~~a~~~~-------------------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 389 REKLSKLAKIAEERG-------------------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHHHHTT--------------------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-------------------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877776655 356666677777888888777654
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.52 E-value=0.98 Score=36.75 Aligned_cols=57 Identities=5% Similarity=0.022 Sum_probs=43.3
Q ss_pred HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 440 ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 440 ~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..|.+.++++.|.++++.+..-.+.+...|...-.+|.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456677777777777777777555567777778888888888888888888887755
No 218
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.17 E-value=11 Score=35.29 Aligned_cols=125 Identities=11% Similarity=0.157 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~ 549 (857)
..+|..+.+.+....+..+++.+...+ . .+....+.++..|++... ......+.. .++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-------------~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~ 69 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-------------S-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNH 69 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-------------c-cchhHHHHHHHHHHHHCH-HHHHHHHHh------cccc
Confidence 456666667777777777777776654 2 345566677777776532 333333331 1223
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 003016 550 TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ-SNYEKAVALINAMAYAPFHITERQWTELFES 628 (857)
Q Consensus 550 ~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~-g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a 628 (857)
.....++..|.+.+.++++..++..+.. |...+..+... ++++.|.+++.+- -+...|..++..
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~ 134 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKA 134 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHH
Confidence 3334466667777777777777766532 33344444444 6777777766652 144466666655
Q ss_pred hh
Q 003016 629 NE 630 (857)
Q Consensus 629 ~~ 630 (857)
+.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.08 E-value=18 Score=36.30 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+...|++.+|...|+.+.....-.| -....-.++.++-+.|+++.|...|++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677777777777665421111 1334445566666777777777777776543
No 220
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.91 E-value=5.5 Score=45.25 Aligned_cols=110 Identities=11% Similarity=0.041 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 157 AIRVLVDRLSEREMTAKNWKFVR-IMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 157 ~~~~l~~~l~~~~~~~~A~~l~~-~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
.....|....-+++++++....+ .-.-.. ......+.+++-+.+.|..+.|+++.. |. ..=.
T Consensus 263 ~~~~~fk~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~------------D~---~~rF 325 (443)
T PF04053_consen 263 LSELEFKTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVT------------DP---DHRF 325 (443)
T ss_dssp HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-------------H---HHHH
T ss_pred HHHHHHHHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcC------------Ch---HHHh
Confidence 33444444445555555544443 111111 113334555555555555555555532 11 1112
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 290 (857)
....++|+++.|.++-.+. .+...|..|.....+.|+++-|.+.|.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 2334455555555443222 34445555555555555555555555443
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.83 E-value=9.9 Score=43.75 Aligned_cols=166 Identities=19% Similarity=0.209 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCH------HHHHHHHHHHHH----cCChhHHHHHHHHhHHcCCCC
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSR------FVYTKLLAILGK----AGRPHEALRIFNLMLEDCNLY 261 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~------~~~n~Li~~y~k----~g~~~~A~~vf~~m~~~~gi~ 261 (857)
.+..+++..+-.||=+.|++.+....+. .....+ -.|...+..++- ....+.|.+++..+..+ .
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~---~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---y 263 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKS---ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---Y 263 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhcc---CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---C
Confidence 4556677777778888888888876542 111122 234444444433 45678899999999986 4
Q ss_pred CCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 262 PDIAAYHSVAV-TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 262 pd~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
|+..-|...-. .+...|++++|.+.|+...... .. ..+.....+--+.-.+.-..+|++|.+.|..+
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-~~-----------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQ-SE-----------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccch-hh-----------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 88888766654 5567799999999999865422 00 12233444445666678889999999999999
Q ss_pred HHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH-------HHHHHHHHHHh
Q 003016 341 RKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI-------NEAVAAVRNME 388 (857)
Q Consensus 341 ~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~-------~~A~~lf~~m~ 388 (857)
.+.. ..+-.++| ....+|...|+. ++|.++|.+.+
T Consensus 332 ~~~s~WSka~Y~Y-------------~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 332 LKESKWSKAFYAY-------------LAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HhccccHHHHHHH-------------HHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8753 22223333 233344455666 77777777654
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=44 Score=40.07 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=109.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTL----GQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
...-|+++.+...++.|..+-..-. -|..+-..+...| -+.|++++|...|-+-...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~------------- 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF------------- 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-------------
Confidence 4456777777788888877755432 3444444444444 3678889888888776543
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
+.|. .+|.-|.....+..--.+++.+.+.|+.-...| +.|+++|.+.++.+.-.++.+.
T Consensus 398 ---le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dht-------------tlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 398 ---LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLANSDHT-------------TLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred ---CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccccchhH-------------HHHHHHHHHhcchHHHHHHHhc
Confidence 4443 256666666667777778888888888776666 6788899998888888777776
Q ss_pred HhhcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Q 003016 387 MEQRGV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMK 459 (857)
Q Consensus 387 m~~~~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~ 459 (857)
-. .|. ..|. ...+..+-+.+-.++|..+-..... +......++ -..+++++|.+.+..++
T Consensus 457 ~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 457 CD-KGEWFFDV---ETALEILRKSNYLDEAELLATKFKK------HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred CC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 66 332 2232 2345566666666666554333211 222333332 34566777777776664
No 223
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.73 E-value=11 Score=34.55 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=76.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC----------------CCHHHHH
Q 003016 526 TAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEI----------------PHPLFFT 588 (857)
Q Consensus 526 ~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~----------------p~~~~~~ 588 (857)
..|.++++.++..+...+ .+..-||.+|.-....-+-+-..++++.+-.- .+. .+.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD 90 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVD 90 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHH
Confidence 348888899888887764 24455555554444444444444444443221 111 1334555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 589 EMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.-++.+..+|+-+.-.++++.+.. .-+|++..+-.+-.|+.+.|+...+..+++...+.|+.
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 667788888888888888888754 45788889999999999999999999999999999976
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.49 E-value=0.99 Score=37.35 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHc---CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLED---CNL-YPD-IAAYHSVAVTLGQVGLLKELVKLIERMR 291 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi-~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~ 291 (857)
.+|+.+-..|...|++++|+..|++...- .|- .|+ ..+++.+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667777777777777777777665431 111 122 4567777777777788888877777654
No 225
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.41 E-value=1.3 Score=36.07 Aligned_cols=55 Identities=16% Similarity=0.325 Sum_probs=42.8
Q ss_pred HHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 369 RAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
..|.+.+++++|.++++.+...+.. +...|.....++.+.|++++|...|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888776543 455677778888888888888888888776
No 226
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.17 E-value=14 Score=35.82 Aligned_cols=136 Identities=10% Similarity=0.069 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG-- 563 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G-- 563 (857)
.+.++.+...+ +.|+...|..++..+.+.|...... .++..++-+|.......+-.+....
T Consensus 14 lEYirSl~~~~-------------i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~ 76 (167)
T PF07035_consen 14 LEYIRSLNQHN-------------IPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPP 76 (167)
T ss_pred HHHHHHHHHcC-------------CCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChH
Confidence 34555566666 8899999999999999999876544 5555678888776655553332211
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHH
Q 003016 564 KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLN 643 (857)
Q Consensus 564 ~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~ 643 (857)
-..-|.+.+.++.. .+..++..+...|++-+|+++.+.... .+...-..++.|....+|......+++
T Consensus 77 ~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 77 AYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred HHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 12334444444431 367788899999999999999988632 122233567888888888887777777
Q ss_pred HHHhCCC
Q 003016 644 ALCNCNA 650 (857)
Q Consensus 644 ~m~~~g~ 650 (857)
.+.+.+.
T Consensus 145 ff~~~n~ 151 (167)
T PF07035_consen 145 FFEERNL 151 (167)
T ss_pred HHHHhhH
Confidence 7776553
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.15 E-value=9.5 Score=43.87 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH-----HHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI-----TFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-----t~~~ll~a~~~----~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
...++....-.|+-+.+++++.+-.+..++.-... +|..++..++. ...++.|.++++.+.... |+...|
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 44455555556666666666665544223322211 13333332222 344555666666655532 333333
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHH
Q 003016 470 NAM-LKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 470 ~~l-i~~~~~~g~~~~A~~lf~~M~ 493 (857)
... -..+...|++++|++.|++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 222 233344566666666666543
No 228
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.54 E-value=13 Score=39.81 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc--C----CCHHHHHHHHHHHhh-C---CCCCHHHHHHHHHHHHhcCC-
Q 003016 413 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMD--G----GHIDDCISIFQHMKD-H---CEPNIGTVNAMLKVYSRNDM- 481 (857)
Q Consensus 413 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~--~----g~~~~A~~if~~m~~-~---~~p~~~~~~~li~~~~~~g~- 481 (857)
++.+.+++.|.+ .|++-+.++|.+....... . -.+..+..+|+.|++ + ..++-..+.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 79 KEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 344556666766 6777776666553322222 1 234567777777776 2 34555566666554 2222
Q ss_pred ---HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc-CC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 482 ---FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA-HQ--WEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 482 ---~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~-g~--~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
.+.+..+|+.+...| +.. |..-+.+-+-+++.. .. ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~-------------f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAG-------------FKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhC-------------CCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 244566666666655 444 222222222222222 11 3356666666766676666665544
Q ss_pred H
Q 003016 555 L 555 (857)
Q Consensus 555 L 555 (857)
+
T Consensus 223 l 223 (297)
T PF13170_consen 223 L 223 (297)
T ss_pred H
Confidence 4
No 229
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.50 E-value=16 Score=33.67 Aligned_cols=137 Identities=9% Similarity=0.121 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
.|.+++..++..+.... .+..-||-+|.-....-+-+-..+.++.+-+ .-| ...||++.....
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK----IFD----------ISKCGNLKRVIE 77 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-----------GGG-S-THHHHH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh----hcC----------chhhcchHHHHH
Confidence 35666666666665543 2333355555555555555555555555433 111 123455555444
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHH
Q 003016 454 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 454 if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 533 (857)
.+-.+. .+....+.-++.+.+.|.-+.-.++..++.+. -+++......+-.||.+.|+..++
T Consensus 78 C~~~~n----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn--------------~~~~p~~L~kia~Ay~klg~~r~~ 139 (161)
T PF09205_consen 78 CYAKRN----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN--------------EEINPEFLVKIANAYKKLGNTREA 139 (161)
T ss_dssp HHHHTT-------HHHHHHHHHHHHTT-HHHHHHHHHHH-------------------S-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhc----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------------cCCCHHHHHHHHHHHHHhcchhhH
Confidence 444433 34556667777788888888888888877643 246677777778888888888888
Q ss_pred HHHHHHHHHcCC
Q 003016 534 EYVYKGMALSGC 545 (857)
Q Consensus 534 ~~l~~~m~~~g~ 545 (857)
.+++.+.-+.|+
T Consensus 140 ~ell~~ACekG~ 151 (161)
T PF09205_consen 140 NELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-
T ss_pred HHHHHHHHHhch
Confidence 888888777775
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.42 E-value=34 Score=37.76 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH---cCChhH
Q 003016 173 KNWKFVRIMNQS-G--LMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK---AGRPHE 246 (857)
Q Consensus 173 ~A~~l~~~M~~~-g--~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k---~g~~~~ 246 (857)
+..+.+..|+.. + -..+..+...++-+|-...+++..+++.+.+..........+..+--...-++.+ .|+.++
T Consensus 121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~ 200 (374)
T PF13281_consen 121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK 200 (374)
T ss_pred HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence 334445555543 1 1234445556666788889999999999988554211111122333334445566 899999
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHH
Q 003016 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLG 275 (857)
Q Consensus 247 A~~vf~~m~~~~gi~pd~~t~~~li~~~~ 275 (857)
|++++..+... .-.++..+|..+...|-
T Consensus 201 Al~il~~~l~~-~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 201 ALQILLPVLES-DENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHHHHHHHHhc-cCCCChHHHHHHHHHHH
Confidence 99999985443 44578888888877664
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.29 E-value=4.2 Score=45.41 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 225 LKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 225 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+.+...|+.+-.+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|++++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999999776 34764 46999999999999999999999998764
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.52 E-value=1.7 Score=35.84 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
+|+.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555443
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.50 E-value=5.2 Score=44.65 Aligned_cols=65 Identities=9% Similarity=-0.019 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH----hHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE----YTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~----~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+-.+|...|+.++|+..+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---------------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666777777777777777777777776663 3653 3467777777777777777777777
Q ss_pred HHHc
Q 003016 540 MALS 543 (857)
Q Consensus 540 m~~~ 543 (857)
.++.
T Consensus 138 ALel 141 (453)
T PLN03098 138 ALRD 141 (453)
T ss_pred HHHh
Confidence 7653
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=88.34 E-value=27 Score=34.21 Aligned_cols=107 Identities=12% Similarity=-0.001 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCH
Q 003016 185 GLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 185 g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~ 264 (857)
.+.|+...-..|..++...|+..+|...|++...- .+..|..+.-.+..+....+++..|...++.+.+-..-..++
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSG---IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 34688888888999999999999999999988653 233477788888888888999999999999987732111234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
.+.-.+...|...|.+..|..-|+.....-
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 456667788999999999999999987743
No 235
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.94 E-value=27 Score=33.81 Aligned_cols=133 Identities=14% Similarity=0.175 Sum_probs=89.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC--CCHHHHHHHHHHHh
Q 003016 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG--GHIDDCISIFQHMK 459 (857)
Q Consensus 382 ~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~--g~~~~A~~if~~m~ 459 (857)
+.+..+.+.++.|+...|..+|..+.+.|++..... +.. .++-+|.......+-.+... .-..-|.+.+.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQ-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHh-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 455566678899999999999999999998765444 444 57777776665555443321 12344455555444
Q ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 460 DHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 460 ~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
. .+..++..+...|++-+|+++.+.... .+...-..++.|....++...-..+|+-
T Consensus 90 ~-------~~~~iievLL~~g~vl~ALr~ar~~~~-----------------~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 90 T-------AYEEIIEVLLSKGQVLEALRYARQYHK-----------------VDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred h-------hHHHHHHHHHhCCCHHHHHHHHHHcCC-----------------cccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2 467778889999999999999887532 2223335567777777777777777766
Q ss_pred HHHc
Q 003016 540 MALS 543 (857)
Q Consensus 540 m~~~ 543 (857)
....
T Consensus 146 f~~~ 149 (167)
T PF07035_consen 146 FEER 149 (167)
T ss_pred HHHh
Confidence 6553
No 236
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=24 Score=37.15 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG---LLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
|..-|-.|-..|...|+++.|..-|....+-.| ++...+..+..++.... ...++..+|+++....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D--------- 223 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD--------- 223 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---------
Confidence 556666666666666666666666666655322 34444444444433322 2345666666666532
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+-|+.+-..+-..+...|++.+|...|+.|.+.
T Consensus 224 -------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 224 -------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred -------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 223444444444566666666666666666654
No 237
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.99 E-value=52 Score=36.01 Aligned_cols=215 Identities=15% Similarity=0.143 Sum_probs=119.1
Q ss_pred hhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ--VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 244 ~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
+..+.+.|..-+.+ .-|.+|-.++.. .|+-..|.++-.+-.+. +..|..-.-.++
T Consensus 69 P~t~~Ryfr~rKRd-------rgyqALStGliAagAGda~lARkmt~~~~~l----------------lssDqepLIhlL 125 (531)
T COG3898 69 PYTARRYFRERKRD-------RGYQALSTGLIAAGAGDASLARKMTARASKL----------------LSSDQEPLIHLL 125 (531)
T ss_pred cHHHHHHHHHHHhh-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh----------------hhccchHHHHHH
Confidence 44556666665543 245556555543 46667777766655433 455666566666
Q ss_pred HHHH--hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 322 NACV--PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 322 ~~~~--~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
.+-. -.|+++.|.+-|+.|... |.....+ ...|.-.--+.|..+.|.+.-+..-..-... ...+
T Consensus 126 eAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG----------LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-~WA~ 191 (531)
T COG3898 126 EAQAALLEGDYEDARKKFEAMLDD---PETRLLG----------LRGLYLEAQRLGAREAARHYAERAAEKAPQL-PWAA 191 (531)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh----------HHHHHHHHHhcccHHHHHHHHHHHHhhccCC-chHH
Confidence 6543 468899999999988752 3332221 1233333346688888887777665543221 2346
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHc---CCCHHHHHHHHHHHhhCCCCCHHHHH-HHH
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT--FTGLIISSMD---GGHIDDCISIFQHMKDHCEPNIGTVN-AML 473 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~a~~~---~g~~~~A~~if~~m~~~~~p~~~~~~-~li 473 (857)
.+.+...|..|+|+.|+++++.-+....+.++..- -..|+.+-+. ..+...|...-.+.. ++.||.+--. .--
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~-KL~pdlvPaav~AA 270 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN-KLAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh-hcCCccchHHHHHH
Confidence 77888999999999999999887774455555432 2223322211 112222322222222 1334432221 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 003016 474 KVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|.+.|+..++-.+++.+-+..
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcC
Confidence 45566666666666666666544
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=86.70 E-value=13 Score=40.47 Aligned_cols=287 Identities=12% Similarity=0.034 Sum_probs=139.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--H--cCCCC
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLR--K--SGLKP 347 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~--~--~g~~p 347 (857)
.-+++.|+......+|+...+.|... +..=..+|.-|-.+|.-.+++++|++++..=+ . .|-+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeD------------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdkl 92 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTED------------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKL 92 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchH------------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchh
Confidence 34789999999999999999887211 11112346667777777888999988765421 0 01000
Q ss_pred C-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH----hhcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 348 S-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM----EQRG-VVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 348 d-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m----~~~~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
. ..+. ..|-+.+--.|.+++|.-.-.+- .+.| -+.....+..+...|...|+.-.-..
T Consensus 93 GEAKss------------gNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~---- 156 (639)
T KOG1130|consen 93 GEAKSS------------GNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA---- 156 (639)
T ss_pred cccccc------------ccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----
Confidence 0 0000 12223333345555554332211 1111 11122234445555655554210000
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 003016 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-----H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETT-- 493 (857)
Q Consensus 422 m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-----~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~-- 493 (857)
-++ .|-.++.++ ..++.|.++|.+-.+ + -..--..|..|-..|.-.|+++.|+..-+.=.
T Consensus 157 pee-~g~f~~ev~-----------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i 224 (639)
T KOG1130|consen 157 PEE-KGAFNAEVT-----------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI 224 (639)
T ss_pred hhh-cccccHHHH-----------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH
Confidence 000 122222222 011222222222111 0 00011234444555555667777765544321
Q ss_pred --HcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHH
Q 003016 494 --RANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GC-QLDQTKHAWLLVEASRAGKCH 566 (857)
Q Consensus 494 --~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~-~pd~~t~~~Ll~~~~~~G~~~ 566 (857)
+-| .-......+..+-+++.-.|+++.|.+.|+.-... |- ........+|-+.|.-...++
T Consensus 225 a~efG------------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~ 292 (639)
T KOG1130|consen 225 AQEFG------------DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQ 292 (639)
T ss_pred HHHhh------------hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHH
Confidence 111 00112235666667777777777777777654432 21 112234556666676667777
Q ss_pred HHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 567 LLEHAFDSLLE----A-GEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 567 ~A~~~~~~m~~----~-gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.|+.++..=.. . ...-....+++|-.++-..|..++|+.+.+.-
T Consensus 293 kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 293 KAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777753221 1 12224567777888888888888888777664
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.17 E-value=52 Score=35.27 Aligned_cols=175 Identities=15% Similarity=0.174 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHH--cCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh--cCCH----HHHHHHHHHHHcCCChhhh
Q 003016 228 RFVYTKLLAILGK--AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ--VGLL----KELVKLIERMRQKPSKRIK 299 (857)
Q Consensus 228 ~~~~n~Li~~y~k--~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~--~g~~----~~A~~l~~~m~~~g~~~l~ 299 (857)
..++.+++..... ...+++...+++.|.+. |+..+..+|-+....... ..++ ..|..+|+.|++.-..
T Consensus 60 ~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f--- 135 (297)
T PF13170_consen 60 RFILAALLDISFEDPEEAFKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF--- 135 (297)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc---
Confidence 3455555444332 11234556778888884 899998888774433333 3333 5689999999987411
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC
Q 003016 300 NMHRKNWDPVLEPDLVVYNAVLNACVPSHQW----KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG 375 (857)
Q Consensus 300 ~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g 375 (857)
.-.++-..+..++.. ...+. +.+..+|+.+.+.|+..+...... +.++.......
T Consensus 136 ---------LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~L----------S~iLaL~~~~~ 194 (297)
T PF13170_consen 136 ---------LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFL----------SHILALSEGDD 194 (297)
T ss_pred ---------ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHH----------HHHHHhccccc
Confidence 135667778777765 33333 567788889999898776654310 22222221111
Q ss_pred C--HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHhcCCC
Q 003016 376 K--INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW-----QDAMLVVEKIKSLRHS 428 (857)
Q Consensus 376 ~--~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~-----~~A~~l~~~m~~~~g~ 428 (857)
. +..+.++++.+.+.|+.+....|.. +..++-.+.. +...++.+.+.+..+.
T Consensus 195 ~~~v~r~~~l~~~l~~~~~kik~~~yp~-lGlLall~~~~~~~~~~i~ev~~~L~~~k~~ 253 (297)
T PF13170_consen 195 QEKVARVIELYNALKKNGVKIKYMHYPT-LGLLALLEDPEEKIVEEIKEVIDELKEQKGF 253 (297)
T ss_pred hHHHHHHHHHHHHHHHcCCccccccccH-HHHHHhcCCchHHHHHHHHHHHHHHhhCccc
Confidence 1 4578888999999998877665554 3444433333 3334444445444443
No 240
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=85.80 E-value=28 Score=38.10 Aligned_cols=132 Identities=11% Similarity=-0.088 Sum_probs=85.7
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCH
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYKGMAL----SGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLE----AG-EIPHP 584 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~~m~~----~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~----~g-i~p~~ 584 (857)
..|..|-+.|.-.|+++.|+..++.-.. .|-.. ....+..|-+++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666777777999999988765432 23222 234777888888889999999999886443 22 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhh----hCC-CccCHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 003016 585 LFFTEMLIQAIVQSNYEKAVALINAMA----YAP-FHITERQWTELFESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 585 ~~~~~li~~~~~~g~~~~A~~l~~~M~----~~~-~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~ 646 (857)
.+..+|-..|.--..+++|+..+.+-+ +.+ ..-....+-+|-.++...|..+.|..+...-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555667777777788899988877632 112 11223456667777777777777766655444
No 241
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.66 E-value=66 Score=35.97 Aligned_cols=375 Identities=13% Similarity=0.069 Sum_probs=198.2
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPD------IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
+-+.+++.+|.++|.++-.+ +..+ .+.-+.+|++|... +.+.....+....+..
T Consensus 16 Lqkq~~~~esEkifskI~~e--~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~----------------- 75 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE--KESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF----------------- 75 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH--hhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc-----------------
Confidence 35678999999999998774 2233 23356778888654 4555555555555432
Q ss_pred CCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHc--CCCCCHHHHH--HHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 312 PDLVVYNAVLNA--CVPSHQWKGVFWVFKQLRKS--GLKPSAATYG--LAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 312 pd~~t~~~li~~--~~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~--~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
| ...|-.+..+ +-+.+.+..|.+.+..-... +-.|.----+ -++..+ ..-+..++...+.|.+.+++.+++
T Consensus 76 ~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df--~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 76 G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF--FLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH--HHHHHHHHHHHhcCCcchHHHHHH
Confidence 2 2234444444 45788999999988887655 3332211100 011111 112778888889999999999999
Q ss_pred HHhhcCCC----CCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHhcC-----CCCCcHHHHHHHH--
Q 003016 386 NMEQRGVV----GTASVYYELACCLCNNG---------------RWQDAMLVVEKIKSLR-----HSKPLEITFTGLI-- 439 (857)
Q Consensus 386 ~m~~~~~~----~d~~t~~~lI~~~~~~g---------------~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll-- 439 (857)
+|..+=.. -+..+||.++-.+++.= .++.++-..++|.... .+.|-..-+..++
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHH
Confidence 98765333 56777877554444321 1222333333333210 1122222111111
Q ss_pred ------------------------------------HHHHcCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHh
Q 003016 440 ------------------------------------ISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 440 ------------------------------------~a~~~~g~~~~A~~if~~m~~-----~~~p~~~~~~~li~~~~~ 478 (857)
..... +.+++..+-+.+.. -...-+.++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 23333332222221 112335667788888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHH-----------------------------------H
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLE-----------------------------------A 523 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~-----------------------------------a 523 (857)
.++..+|.+.+.-+....+..|- . ..+-....+...++. +
T Consensus 311 ~~~T~~a~q~l~lL~~ldp~~sv--s---~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILDPRISV--S---EKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHhHHHHHHHHHHHHhcCCcchh--h---hhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 89888888888776654421110 0 000001111111111 1
Q ss_pred ---HHhcCC-HHHHHHHHHHHHHcCCCCC-HHHHH----HHHHHHH---HcCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 003016 524 ---SATAHQ-WEYFEYVYKGMALSGCQLD-QTKHA----WLLVEAS---RAGKCHLLEHAFDSLLEAGEIP----HPLFF 587 (857)
Q Consensus 524 ---~~~~g~-~~~a~~l~~~m~~~g~~pd-~~t~~----~Ll~~~~---~~G~~~~A~~~~~~m~~~gi~p----~~~~~ 587 (857)
+-+.|. -+.|+++++...+ +.+. ...-| .+=.+|. ....+.+-..+-+-+.+.|++| +...-
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 112233 5566666666654 2222 22222 2222332 2233444455555566668776 34455
Q ss_pred HHHHHH--HHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 003016 588 TEMLIQ--AIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 588 ~~li~~--~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~ 646 (857)
|.|-+| +..+|++.++...-.-+. .+.|++.+|.-+--......+.++|-..+..+.
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 666554 445688888765544443 578888888877667777778888877775543
No 242
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.96 E-value=57 Score=34.62 Aligned_cols=229 Identities=13% Similarity=0.065 Sum_probs=131.9
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CCCC
Q 003016 325 VPSHQWKGVFWVFKQLRKSG--LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR--------GVVG 394 (857)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~--------~~~~ 394 (857)
.+.|+.+.|..++.+....- ..|+..-. ++...||.-...+.+..++++|...+++..+- ...+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~------La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE------LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCC
Confidence 46799999999998886543 33333322 12233566666666655877777666553221 1222
Q ss_pred C-----HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH
Q 003016 395 T-----ASVYYELACCLCNNGRW---QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 395 d-----~~t~~~lI~~~~~~g~~---~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~ 466 (857)
+ ..+...++.+|...+.. ++|..+++.+....+-+| .++..-+..+.+.++.+.+.+++..|.....-..
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e 155 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE 155 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhccccc
Confidence 2 34567788888887764 456777777766333333 3444556666669999999999999998644334
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh--hhHH---HHHhc------CCHHH
Q 003016 467 GTVNAMLKVY---SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS--SMLE---ASATA------HQWEY 532 (857)
Q Consensus 467 ~~~~~li~~~---~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~--~ll~---a~~~~------g~~~~ 532 (857)
..+..++..+ .... ...|...+..+.... +.|....|. .++. ..... ..++.
T Consensus 156 ~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r-------------~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~ 221 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKS-PELAAFCLDYLLLNR-------------FKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIES 221 (278)
T ss_pred chHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHH-------------hCCChhHHHHHHHHHHHHHHcCCccccchhHHHH
Confidence 4455555544 4444 356666666666554 444332111 1111 11221 12555
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHH-------HHHcCCHHHHHHHHHHH
Q 003016 533 FEYVYKGMAL-SGCQLDQTKHAWLLVE-------ASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 533 a~~l~~~m~~-~g~~pd~~t~~~Ll~~-------~~~~G~~~~A~~~~~~m 575 (857)
..+++....+ .+.+.+..+-.++... +.+.+++++|.+.|+-.
T Consensus 222 l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 222 LEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 5555654433 2344444443333322 45778999999988754
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.34 E-value=98 Score=38.78 Aligned_cols=115 Identities=13% Similarity=0.130 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVY----SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 463 ~p~~~~~~~li~~~----~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.|+...+..+..+| .+.+++++|.-.|+..-+ ..-.+.+|-..|+|.+|+.+..
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------------------lekAl~a~~~~~dWr~~l~~a~ 989 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------------------LEKALKAYKECGDWREALSLAA 989 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------------------HHHHHHHHHHhccHHHHHHHHH
Confidence 36666655555444 456788888877765422 1235678888899999998888
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 539 GMALSGCQLDQT--KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 539 ~m~~~g~~pd~~--t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
+|.. .-|.. +-..|+.-+...++.-+|-++..+.... ....+..+++...+++|+.+...-
T Consensus 990 ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 990 QLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 7642 22322 2355666677888888888777665442 334456677777788887776544
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.13 E-value=13 Score=40.68 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+++.+.-+|.+.+.+..|++.-......-++|+...----.+|...|+++.|+..|.++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444445555555555555555555443344555544445555556666666666666655
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=34 Score=36.53 Aligned_cols=84 Identities=6% Similarity=0.039 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH----HHHHHhcCCHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM----LKVYSRNDMFSK 484 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l----i~~~~~~g~~~~ 484 (857)
+|++.+|-..++++.+ ..+.|...+.-.=.+|.-.|+.+.-...++.+.....+|...|.-+ --++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4555555555555554 3444555555555566666666665555555554333444333222 222334566666
Q ss_pred HHHHHHHHHH
Q 003016 485 AKELFEETTR 494 (857)
Q Consensus 485 A~~lf~~M~~ 494 (857)
|.+.-++..+
T Consensus 194 AEk~A~ralq 203 (491)
T KOG2610|consen 194 AEKQADRALQ 203 (491)
T ss_pred HHHHHHhhcc
Confidence 6665555544
No 246
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.21 E-value=46 Score=39.82 Aligned_cols=62 Identities=11% Similarity=0.023 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHcC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL-------KELVKLIERMRQK 293 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~-------~~A~~l~~~m~~~ 293 (857)
.+| ++|--+.|||++++|.++...... .+......+...+..|+...+- +....-|++..+.
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 355 466677899999999999866665 3445566777788888775332 4555666666554
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=83.13 E-value=24 Score=33.94 Aligned_cols=87 Identities=9% Similarity=-0.074 Sum_probs=52.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~ 553 (857)
-+-..|++++|..+|.-+...+ |... -|..|-.+|-..++++.|...|......+. -|+..+-
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d---------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f 109 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD---------------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVF 109 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccc
Confidence 3456777888888877766543 3222 233444444445777777777776655432 2333344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
..-.+|...|+.+.|+..|....+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455566677777777777777665
No 248
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=82.63 E-value=87 Score=34.96 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
-..+|.+.|..-.+..-++.|..+|-+..+.+. +.++++.++++|.-++. |+..-|..+|+.-..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~------------~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~-- 460 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI------------VGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL-- 460 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC------------CCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--
Confidence 345667777777777777888888888777661 45677788887776655 666777777765433
Q ss_pred CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHH
Q 003016 545 CQLDQTKH-AWLLVEASRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQ 621 (857)
Q Consensus 545 ~~pd~~t~-~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~ 621 (857)
.-||...| +-.+.-+.+.++-+.|..+|+...++ +..+ ...|..||.--..-|++..|..+=++|. ...|...+
T Consensus 461 ~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~--e~~pQen~ 537 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR--ELVPQENL 537 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH--HHcCcHhH
Confidence 23444333 33444556677777788888754433 1111 3567777777777777777777766664 23455555
Q ss_pred HHHHHHHhhh
Q 003016 622 WTELFESNED 631 (857)
Q Consensus 622 ~~~Ll~a~~~ 631 (857)
...+.+.++.
T Consensus 538 ~evF~Sry~i 547 (660)
T COG5107 538 IEVFTSRYAI 547 (660)
T ss_pred HHHHHHHHhh
Confidence 5555444443
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.62 E-value=12 Score=39.36 Aligned_cols=80 Identities=18% Similarity=0.181 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH----cCCCCCCHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE----DCNLYPDIA 265 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~gi~pd~~ 265 (857)
..++..++.++...|+.+.+...++..+.. ++-+...|-.||.+|.+.|+...|++.|+.+.. ..|+.|...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIEL----DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHH
Confidence 346778899999999999999999998774 334889999999999999999999999998765 468999988
Q ss_pred HHHHHHHH
Q 003016 266 AYHSVAVT 273 (857)
Q Consensus 266 t~~~li~~ 273 (857)
++......
T Consensus 229 ~~~~y~~~ 236 (280)
T COG3629 229 LRALYEEI 236 (280)
T ss_pred HHHHHHHH
Confidence 88776666
No 250
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.64 E-value=88 Score=34.33 Aligned_cols=267 Identities=13% Similarity=0.113 Sum_probs=149.5
Q ss_pred CCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCcCCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC
Q 003016 187 MFTEGQMLKLLKGLGD--KGSWRQAMSVLDWVYGLKDKRDLKSRFV--YTKLLAILGKAGRPHEALRIFNLMLEDCNLYP 262 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~--~g~~~~A~~l~~~~~~~~~~~~~~~~~~--~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p 262 (857)
.-|...+..++.+-.. .|+.+.|++-|+.|... |.... .-.|.-.--+.|..+.|+..-+..-+. -|
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~---Ap 185 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK---AP 185 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh---cc
Confidence 3455555555555433 36666666666666421 11111 111222223446666666655555442 23
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH--HHHHHHHHHh---cCChHHHHHH
Q 003016 263 D-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV--YNAVLNACVP---SHQWKGVFWV 336 (857)
Q Consensus 263 d-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t--~~~li~~~~~---~g~~~~A~~l 336 (857)
. ...|.+.+...+..|+++.|+++++.-+... .+.+|+.- -..|+.+-+. .-+...|...
T Consensus 186 ~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--------------vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 186 QLPWAARATLEARCAAGDWDGALKLVDAQRAAK--------------VIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--------------hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 2 4556666666677777777777666554432 14444432 2233333221 2233344443
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHH
Q 003016 337 FKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAM 416 (857)
Q Consensus 337 ~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~ 416 (857)
-.+..+ +.||.+-- --.-...+.+.|++.++-.+++.+-+....|+.. ..|....-.+.++
T Consensus 252 A~~a~K--L~pdlvPa-----------av~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~ 312 (531)
T COG3898 252 ALEANK--LAPDLVPA-----------AVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTAL 312 (531)
T ss_pred HHHHhh--cCCccchH-----------HHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHH
Confidence 333332 33443321 0233467889999999999999998877766542 2344444445555
Q ss_pred HHHHHHHhcCCCCCcH-HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 003016 417 LVVEKIKSLRHSKPLE-ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR-NDMFSKAKELFEETTR 494 (857)
Q Consensus 417 ~l~~~m~~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~-~g~~~~A~~lf~~M~~ 494 (857)
.-++.......++||. .+...+..+-...|++..|..--+.... ..|....|-.|-+.-.- .|+-.++...+.+-.+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 5566655555667765 4566677777888888877765444432 44777777777765544 4999999998888775
Q ss_pred cC
Q 003016 495 AN 496 (857)
Q Consensus 495 ~g 496 (857)
..
T Consensus 392 AP 393 (531)
T COG3898 392 AP 393 (531)
T ss_pred CC
Confidence 43
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.48 E-value=23 Score=34.77 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCcHH----HH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLR--HSKPLEI----TF 435 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~--g~~pd~~----t~ 435 (857)
+..+.+.|++.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+.....+..... +-.++.. +|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 58899999999999999999999998765554 3356778888999999999988888776521 1112222 12
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
..+ ++...+++..|-+.|-....
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccCc
Confidence 222 22347899999988877765
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=81.24 E-value=41 Score=30.98 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=71.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT 351 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 351 (857)
-+++..|+++.|++.|.+.... .+.+...||.--.++--.|+.++|+.-+++..+..-.- ..|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l----------------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trt 113 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL----------------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRT 113 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh----------------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chH
Confidence 3577899999999999998874 45688899999999999999999999998887653221 222
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 352 YGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 352 ~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
- | ..|----..|-..|+.+.|..=|+...+.|.
T Consensus 114 a------c--qa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 114 A------C--QAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred H------H--HHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 1 0 0112223357778999999999988776663
No 253
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.42 E-value=1.1e+02 Score=36.76 Aligned_cols=72 Identities=10% Similarity=0.069 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh-------HHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW-------KGVFW 335 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~-------~~A~~ 335 (857)
+...| ++|--|.|+|++++|.++..+.... .......+-..+..|+...+- +....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~----------------~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ 173 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ----------------FQKIERSFPTYLKAYASSPDRRLPPELRDKLKL 173 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG----------------S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh----------------hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 33455 4667788999999999999666544 445555677778888765332 34555
Q ss_pred HHHHHHHcCCCCCHHH
Q 003016 336 VFKQLRKSGLKPSAAT 351 (857)
Q Consensus 336 l~~~m~~~g~~pd~~t 351 (857)
-|+...+.....|.+=
T Consensus 174 ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 174 EYNQRIRNSTDGDPYK 189 (613)
T ss_dssp HHHHHTTT-TTS-HHH
T ss_pred HHHHHhcCCCCCChHH
Confidence 5666555544336554
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.29 E-value=74 Score=32.66 Aligned_cols=207 Identities=14% Similarity=0.146 Sum_probs=112.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|---..+|-...+++.|...+.+..+. .+-|...|.+ ...++.|.-+.++|.+.
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~----------------yEnnrslfhA-------AKayEqaamLake~~kl--- 87 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG----------------YENNRSLFHA-------AKAYEQAAMLAKELSKL--- 87 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH----------------HHhcccHHHH-------HHHHHHHHHHHHHHHHh---
Confidence 444456677777787777766665432 2223322322 23345555566666543
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ--RGVVGTAS--VYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~~d~~--t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
|.++.| ++--..+|..+|..+.|-..+++.-+ .++.|+.. .|.--+..+-..++...|.+++
T Consensus 88 sEvvdl-----------~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~--- 153 (308)
T KOG1585|consen 88 SEVVDL-----------YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY--- 153 (308)
T ss_pred HHHHHH-----------HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---
Confidence 344444 47777888899988888777776432 12333321 1222222222233333333332
Q ss_pred HhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---C--CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---H--CEPNI-GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 423 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~--~~p~~-~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+-..+.+...+++|-..|..-.. . ..++. ..|-+.|-.|.-..++..|.+.|+.--..+
T Consensus 154 -------------gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 154 -------------GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred -------------HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 2333345556666666555544322 1 12222 345666667777888999999998743322
Q ss_pred CCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 497 SSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 497 ~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
. -..| |..+...||.+|- .|+.+++..+..
T Consensus 221 -----~------f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 221 -----A------FLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred -----c------ccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 0 0222 5678888888874 477777765543
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.55 E-value=20 Score=37.26 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=46.7
Q ss_pred HCCCHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCC
Q 003016 408 NNGRWQDAMLVVEKIKSLRHSKPL---EITFTGLIISSMDGGHIDDCISIFQHMKDH---CEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 408 ~~g~~~~A~~l~~~m~~~~g~~pd---~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---~~p~~~~~~~li~~~~~~g~ 481 (857)
+.|++..|...|....+ +.+-+ ...+-.|-.++...|++++|..+|..+.+. .+.-....--|.....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 44455555555555544 11111 123445556666666666666666666552 22233445555555666666
Q ss_pred HHHHHHHHHHHHHcC
Q 003016 482 FSKAKELFEETTRAN 496 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g 496 (857)
.++|...|.+..+.-
T Consensus 231 ~d~A~atl~qv~k~Y 245 (262)
T COG1729 231 TDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHHHHC
Confidence 666666666666644
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.86 E-value=23 Score=36.84 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 003016 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKE 282 (857)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~ 282 (857)
|++..|...|...++..+.+. -....+-.|-..+...|++++|-.+|..+.++.+-.|- +.+.--|..+..+.|+.++
T Consensus 155 gdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 155 GDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 445555555555544332211 12223334555555556666666655555554322222 2445555555555566666
Q ss_pred HHHHHHHHHcC
Q 003016 283 LVKLIERMRQK 293 (857)
Q Consensus 283 A~~l~~~m~~~ 293 (857)
|..+|++..+.
T Consensus 234 A~atl~qv~k~ 244 (262)
T COG1729 234 ACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHH
Confidence 66666555543
No 257
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.52 E-value=34 Score=36.57 Aligned_cols=157 Identities=13% Similarity=0.042 Sum_probs=102.6
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHH----HHHHHcCCC
Q 003016 372 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL----IISSMDGGH 447 (857)
Q Consensus 372 ~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l----l~a~~~~g~ 447 (857)
.-.|+..+|-..++++.+. .+-|...++..=.+|..+|+.+.-...++++.. .-.||...|+-+ .-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3568888888888888764 344666788888899999999998888888875 334444333222 223457899
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhc
Q 003016 448 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 527 (857)
Q Consensus 448 ~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~ 527 (857)
+++|.+.-++..+--+.|...-.+..+.+--.|++.++.++..+-... |.. +.......-|. ..-.+...
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~----Wr~-----s~mlasHNyWH-~Al~~iE~ 260 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD----WRQ-----SWMLASHNYWH-TALFHIEG 260 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc----hhh-----hhHHHhhhhHH-HHHhhhcc
Confidence 999998888777745566777778888888899999999887654321 100 00111111122 12223334
Q ss_pred CCHHHHHHHHHHHH
Q 003016 528 HQWEYFEYVYKGMA 541 (857)
Q Consensus 528 g~~~~a~~l~~~m~ 541 (857)
+.++.|+++|+.-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 78888888887544
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=78.35 E-value=94 Score=35.12 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=101.2
Q ss_pred HHH--HHHHHHHhcC-----CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHH
Q 003016 156 EAI--RVLVDRLSER-----EMTAKNWKFVRIMNQ-SGLMFTEGQMLKLLKGLG----------DKGSWRQAMSVLDWVY 217 (857)
Q Consensus 156 ~~~--~~l~~~l~~~-----~~~~~A~~l~~~M~~-~g~~p~~~t~~~ll~a~~----------~~g~~~~A~~l~~~~~ 217 (857)
+.| ...+.+...- .....|+.+|.+... +.+.|+-..-..++..|- ...+...|.++-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 4455555442 233678888888772 244566543333322221 1234566777777776
Q ss_pred hCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCh
Q 003016 218 GLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSK 296 (857)
Q Consensus 218 ~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 296 (857)
+. +..|.++...+-.++.-.++++.|...|++... +.|| ..+|...--.+.-+|+.++|.+.+++..+...
T Consensus 332 el----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP- 403 (458)
T PRK11906 332 DI----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP- 403 (458)
T ss_pred hc----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc-
Confidence 64 344888888888888888999999999999986 3466 44555555556678999999999999655320
Q ss_pred hhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 297 RIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 297 ~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...-....-..|..|+..+ ++.|..++-+
T Consensus 404 -------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 404 -------------RRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred -------------hhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 2223334444455666554 6666666544
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=77.05 E-value=1e+02 Score=35.01 Aligned_cols=50 Identities=12% Similarity=0.095 Sum_probs=23.1
Q ss_pred HcCCHHHHHHHHHHhhhC-CCccCHHHHHHHHHHhhhccCHHHHHHHHHHH
Q 003016 596 VQSNYEKAVALINAMAYA-PFHITERQWTELFESNEDRISRDKLEKLLNAL 645 (857)
Q Consensus 596 ~~g~~~~A~~l~~~M~~~-~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m 645 (857)
+.|+.++|++.+++|.+. +..-+..+...|+.++-..+...+++.++..-
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345555555555554322 22122234445555555555555555555443
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=76.83 E-value=21 Score=34.30 Aligned_cols=90 Identities=10% Similarity=-0.052 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSA 349 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~ 349 (857)
.--+-+.|++++|..+|.-+...+ .-|..-|..|-.+|-..+++++|...|......+. .|.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d----------------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p 107 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD----------------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence 344557899999999999887643 23455567777777789999999999988766543 2333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
.. -.-.+|...|+.+.|+..|....++
T Consensus 108 ~f--------------~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 108 VF--------------FTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred cc--------------hHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 32 3567888899999999999988773
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.79 E-value=33 Score=37.74 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=90.3
Q ss_pred HHHHHcCCHHHHHHHHHHHhh----cCCCC----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH
Q 003016 369 RAFWEEGKINEAVAAVRNMEQ----RGVVG----------TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434 (857)
Q Consensus 369 ~~y~k~g~~~~A~~lf~~m~~----~~~~~----------d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 434 (857)
+.|.+.|++..|..-|++... ....+ -..+++-+..+|.+.+++..|+..-..... --.+|.-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhH
Confidence 457788999988888776432 11111 133577788899999999999999888876 33566666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK-AKELFEETTRA 495 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~lf~~M~~~ 495 (857)
.--=-.+|...|.++.|+..|+.+.+--+-|-..-+-++.+--+.....+ ..++|..|-..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66677889999999999999999998444455555666666655555444 47888888754
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=76.50 E-value=43 Score=30.81 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=37.1
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 441 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 441 a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
+.+..|+++.|.+.|.+...-++.....||.-..+|--.|+.++|++=+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4456677777777777666655566677777777777777777777766666553
No 263
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.52 E-value=16 Score=31.66 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 415 AMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 415 A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
+.+-++.+.. ..+.|+.....+.+.||.+..++..|.++|+.++.++..+...|..++
T Consensus 26 ~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 26 LRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3344444444 456666666667777777777777777777666654433444555544
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.30 E-value=21 Score=37.70 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
.++..++..+..+|+.+.+...++++..--+-+...|..+|.+|.+.|+...|+..|+.+...- ..+.++.|
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~--------~edlgi~P 225 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTL--------AEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHh--------hhhcCCCc
Confidence 3566777788888888888888888887666788889999999999999999988888876521 11223777
Q ss_pred CHhHhhhhHHH
Q 003016 513 DEYTYSSMLEA 523 (857)
Q Consensus 513 d~~t~~~ll~a 523 (857)
-..+.......
T Consensus 226 ~~~~~~~y~~~ 236 (280)
T COG3629 226 APELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHH
Confidence 77666555444
No 265
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.61 E-value=27 Score=36.93 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=70.6
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHH
Q 003016 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG---LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINE 379 (857)
Q Consensus 303 ~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~ 379 (857)
.+-|..+......+...++..-....+++.+...+-.++..- ..|+...+ +.+..+.+ -+.++
T Consensus 53 ~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-------------~~irlllk-y~pq~ 118 (418)
T KOG4570|consen 53 DKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-------------TWIRLLLK-YDPQK 118 (418)
T ss_pred hhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-------------HHHHHHHc-cChHH
Confidence 344555566677777777776667778888888877776531 23333332 23333333 35557
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 380 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 380 A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
+..++..=.+-|+.||..+++.+|+.+.+.+++.+|..+.-.|..
T Consensus 119 ~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 119 AIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777777767777888888888888888888887777777666655
No 266
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.53 E-value=21 Score=35.51 Aligned_cols=75 Identities=13% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 003016 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEAL 248 (857)
Q Consensus 173 ~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~ 248 (857)
.|...|-.+...+..-+ ......+..|-...+.+.+++++-.++........+|+.++.+|++.|-+.|+++.|.
T Consensus 124 ~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 124 EALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55555556665554333 3333333333345667777777766666544444556777777777777777766653
No 267
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=74.36 E-value=1.8e+02 Score=33.88 Aligned_cols=401 Identities=10% Similarity=0.039 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQM-LKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFV 230 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~-~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~ 230 (857)
.-+.+.+..|+..-.....++.+...+..+... -|..+.| .....-=.+.|..+.+.++|+..+. +.+.++..
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~----aip~Svdl 115 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ----AIPLSVDL 115 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hhhhHHHH
Confidence 345566667766666666666666677777643 3666643 3344444567889999999988765 34447777
Q ss_pred HHHHHHHHHH-cCChhHHHHHHHHhHHcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 231 YTKLLAILGK-AGRPHEALRIFNLMLEDCNLY-PDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 231 ~n~Li~~y~k-~g~~~~A~~vf~~m~~~~gi~-pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
|...+..+.. .|+.+..++.|+....-.|.. ....-|-..|.--..++++.....+|++....+
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP-------------- 181 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP-------------- 181 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh--------------
Confidence 8777665553 478888888898888754432 235568888888888899999999999997653
Q ss_pred CCCCCHHHHHHHHHHHH---hc------CChHHHHHHHHHHHHc---C-CCCCHHHHHHHHHHH-------------HHh
Q 003016 309 VLEPDLVVYNAVLNACV---PS------HQWKGVFWVFKQLRKS---G-LKPSAATYGLAMESY-------------RRC 362 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~---~~------g~~~~A~~l~~~m~~~---g-~~pd~~t~~~ll~~~-------------~~~ 362 (857)
...|+..-.-|. +. -..+++.++-...... + ..+........+.-. ...
T Consensus 182 -----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~ 256 (577)
T KOG1258|consen 182 -----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKR 256 (577)
T ss_pred -----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHH
Confidence 223333333332 22 2233333332222210 0 000000000000000 000
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQR-------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~-------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
..+..-.+|-..-...+....|+.-..+ -..++..+|..-+.--...|+.+.+.-+|+...- ....-+. .|
T Consensus 257 ~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli-~cA~Y~e-fW 334 (577)
T KOG1258|consen 257 IVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI-PCALYDE-FW 334 (577)
T ss_pred HHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh-HHhhhHH-HH
Confidence 0122222333333333444444443322 1223567899888888999999999999988765 2111122 23
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 436 TGLIISSMDGGHIDDCISIFQHMKDH---CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~~if~~m~~~---~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
--.+.-....|+.+.|..++....+- -.|.+....+.+. -..|++..|..+++.....- |
T Consensus 335 iky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~--e~~~n~~~A~~~lq~i~~e~---------------p 397 (577)
T KOG1258|consen 335 IKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE--ESNGNFDDAKVILQRIESEY---------------P 397 (577)
T ss_pred HHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH--HhhccHHHHHHHHHHHHhhC---------------C
Confidence 22333333338888888888776662 2344444444332 23578999999998887643 4
Q ss_pred CHh----HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCC
Q 003016 513 DEY----TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE-----ASRAGKCHLLEHAFDSLLEAGEIPH 583 (857)
Q Consensus 513 d~~----t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-----~~~~G~~~~A~~~~~~m~~~gi~p~ 583 (857)
+.+ -+..+..--........ ...+......|-. +..+...+..- +.-.++.+.|..++..+.+. .+++
T Consensus 398 g~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~-~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~ 474 (577)
T KOG1258|consen 398 GLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKE-NNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDC 474 (577)
T ss_pred chhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhccccc-CcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCcc
Confidence 332 11122211111111111 2222222222211 22222222222 34467888999999888774 5667
Q ss_pred HHHHHHHHHHHHHcCC
Q 003016 584 PLFFTEMLIQAIVQSN 599 (857)
Q Consensus 584 ~~~~~~li~~~~~~g~ 599 (857)
...|..+++-+..++.
T Consensus 475 k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 7888888888777653
No 268
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.23 E-value=0.063 Score=50.79 Aligned_cols=82 Identities=7% Similarity=0.136 Sum_probs=44.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCC
Q 003016 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446 (857)
Q Consensus 367 Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g 446 (857)
+|..|.+.+.......+++.+...+...+....+.++..|++.++.++...+++.. .+ +-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~---~~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS---NN-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS---SS-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc---cc-----cCHHHHHHHHHhcc
Confidence 44555556666666666666665555555666677777777776666665555411 11 22234455555555
Q ss_pred CHHHHHHHHH
Q 003016 447 HIDDCISIFQ 456 (857)
Q Consensus 447 ~~~~A~~if~ 456 (857)
.++++.-++.
T Consensus 85 l~~~a~~Ly~ 94 (143)
T PF00637_consen 85 LYEEAVYLYS 94 (143)
T ss_dssp SHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555444443
No 269
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.92 E-value=34 Score=36.27 Aligned_cols=99 Identities=9% Similarity=0.108 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDC--NLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMH 302 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~--gi~p--d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~ 302 (857)
...+...++..-....+++++...+-.++... ...| +.++|-.++.-| +.++++.++..=.+.|
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky----~pq~~i~~l~npIqYG-------- 130 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY----DPQKAIYTLVNPIQYG-------- 130 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc----ChHHHHHHHhCcchhc--------
Confidence 45556667777777788999999988887630 1112 234444444443 6678888888888888
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 303 RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 303 ~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
+-||..+++.+|+.+.+.+++.+|.++...|....
T Consensus 131 -------iF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 131 -------IFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred -------cccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888887654
No 270
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.27 E-value=48 Score=32.55 Aligned_cols=96 Identities=7% Similarity=0.060 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhhhHHHHHhcCCHHHHHHHHHHHHHc-
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSSMLEASATAHQWEYFEYVYKGMALS- 543 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ll~a~~~~g~~~~a~~l~~~m~~~- 543 (857)
..+..+...|++.|+.++|++.|.++.... ..|.. ..+-.+|..+...+++..+.....+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-------------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYC-------------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456777888889999999999999887765 33433 34566777777778888888777665543
Q ss_pred --CCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 003016 544 --GCQLDQTKHAWLLVE--ASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 544 --g~~pd~~t~~~Ll~~--~~~~G~~~~A~~~~~~m 575 (857)
|-.++...--.+..+ +...|++..|-+.|-..
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 222222111112222 23456666666665443
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.06 E-value=0.099 Score=49.44 Aligned_cols=128 Identities=9% Similarity=0.073 Sum_probs=80.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 320 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
+|..+.+.+.+.....+++.+...+...+.... +.|+..|++.+..+...++++.... .. .
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~------------~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~ 73 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLH------------TLLLELYIKYDPYEKLLEFLKTSNN--YD-----L 73 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHH------------HHHHHHHHCTTTCCHHHHTTTSSSS--S------C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHH------------HHHHHHHHhcCCchHHHHHcccccc--cC-----H
Confidence 577788889999999999999987655555554 8999999999888888888773222 11 3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN 479 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~ 479 (857)
..++..|.+.|.+++|.-++.++..... .+..+...++++.|.+..... ++...|..++..|...
T Consensus 74 ~~~~~~c~~~~l~~~a~~Ly~~~~~~~~----------al~i~~~~~~~~~a~e~~~~~-----~~~~l~~~l~~~~l~~ 138 (143)
T PF00637_consen 74 DKALRLCEKHGLYEEAVYLYSKLGNHDE----------ALEILHKLKDYEEAIEYAKKV-----DDPELWEQLLKYCLDS 138 (143)
T ss_dssp THHHHHHHTTTSHHHHHHHHHCCTTHTT----------CSSTSSSTHCSCCCTTTGGGC-----SSSHHHHHHHHHHCTS
T ss_pred HHHHHHHHhcchHHHHHHHHHHcccHHH----------HHHHHHHHccHHHHHHHHHhc-----CcHHHHHHHHHHHHhc
Confidence 4567777888888888777766533100 000122233344443222222 4567777777776655
Q ss_pred CC
Q 003016 480 DM 481 (857)
Q Consensus 480 g~ 481 (857)
+.
T Consensus 139 ~~ 140 (143)
T PF00637_consen 139 KP 140 (143)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.00 E-value=10 Score=27.42 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+|..+...|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36778889999999999999999999885
No 273
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.81 E-value=1.8e+02 Score=33.22 Aligned_cols=181 Identities=10% Similarity=0.099 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
|-...-+++..++++....-+..+-.+|...| -+...|-.++.+|..+ ..+.-..+++++.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-----------------e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-----------------ESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc-----------------chHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 33445677888888888887888888888754 4566788888888888 55667788888887
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-----CCHHHHHHHHHHHHHCCCHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV-----GTASVYYELACCLCNNGRWQDAML 417 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-----~d~~t~~~lI~~~~~~g~~~~A~~ 417 (857)
..+.-.+.+ ..|...|-+ ++.+.+...|.....+=+. .-...|.-++..- ..+.+..+.
T Consensus 127 ~dfnDvv~~-------------ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~ 190 (711)
T COG1747 127 YDFNDVVIG-------------RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLR 190 (711)
T ss_pred hcchhHHHH-------------HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHH
Confidence 755432222 566666666 7888888888776544222 1123466554321 356677777
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 418 VVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 418 l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
+...++...|...-.+.+--+-.-|....++.+|.+++..+.++-..|...-..+|.-+-
T Consensus 191 l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 191 LQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 777777766666666777778888999999999999999888866667666666665443
No 274
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.38 E-value=1.2e+02 Score=31.17 Aligned_cols=207 Identities=13% Similarity=0.097 Sum_probs=106.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
|.--..+|-...++++|..-+.+..+ +..-+..-|.+ ...++.|.-+.++|.+ +.--+..|+--..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~k-lsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSK-LSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHH
Confidence 44445556666666666655444332 11111111111 1233444445555544 11123456666777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh--HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY--TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLL 556 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~--t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll 556 (857)
+|.++.|-.-+++.-+.- .++.||.. .|.--+...-..++...|.+ .|..+-
T Consensus 104 ~GspdtAAmaleKAak~l-----------env~Pd~AlqlYqralavve~~dr~~ma~e---------------l~gk~s 157 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKAL-----------ENVKPDDALQLYQRALAVVEEDDRDQMAFE---------------LYGKCS 157 (308)
T ss_pred hCCcchHHHHHHHHHHHh-----------hcCCHHHHHHHHHHHHHHHhccchHHHHHH---------------HHHHhh
Confidence 888777766665533210 01445432 22222222222222222322 233344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC---ccCHHHHHHHHHH
Q 003016 557 VEASRAGKCHLLEHAFDSLLEA----GEIPHP-LFFTEMLIQAIVQSNYEKAVALINAMAYAPF---HITERQWTELFES 628 (857)
Q Consensus 557 ~~~~~~G~~~~A~~~~~~m~~~----gi~p~~-~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~---~p~~~~~~~Ll~a 628 (857)
..+.+..++++|-..|..-... .-.|+. ..|...|-.+....++..|...++.--+-|- .-+..+...||.+
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 4556667777766665433211 112222 3466667777778899999999988543332 2234688889988
Q ss_pred hhhccCHHHHHHHH
Q 003016 629 NEDRISRDKLEKLL 642 (857)
Q Consensus 629 ~~~~g~~e~~~~l~ 642 (857)
+- .|+.+.+.++.
T Consensus 238 yd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 YD-EGDIEEIKKVL 250 (308)
T ss_pred hc-cCCHHHHHHHH
Confidence 74 58888887766
No 275
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=71.91 E-value=89 Score=29.37 Aligned_cols=76 Identities=16% Similarity=0.092 Sum_probs=44.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc
Q 003016 200 LGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV 277 (857)
Q Consensus 200 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~ 277 (857)
..+.|+++.|.+.|+.+..+-+.+ .-...+.-.|+.+|.+.++++.|...+++..+...-.|+ +-|...+.|++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 345577777777777765543322 123455666777777777777777777777663222232 3455555554433
No 276
>PRK11906 transcriptional regulator; Provisional
Probab=71.06 E-value=1.9e+02 Score=32.79 Aligned_cols=138 Identities=9% Similarity=0.042 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH-hhhhHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHH
Q 003016 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT-YSSMLEASAT---------AHQWEYFEYVYKGMALSGCQLDQT 550 (857)
Q Consensus 481 ~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t-~~~ll~a~~~---------~g~~~~a~~l~~~m~~~g~~pd~~ 550 (857)
..+.|+.+|.+..... .+.|+-.. |..+-.++.. .....+|.++-+...+.+ .-|+.
T Consensus 273 ~~~~Al~lf~ra~~~~------------~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~ 339 (458)
T PRK11906 273 SIYRAMTIFDRLQNKS------------DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGK 339 (458)
T ss_pred HHHHHHHHHHHHhhcc------------cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHH
Confidence 3567889999887321 15565433 3222222111 123456666666666543 34566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH-hhhCCCccCHHHHHHHHHH
Q 003016 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSNYEKAVALINA-MAYAPFHITERQWTELFES 628 (857)
Q Consensus 551 t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~~~~A~~l~~~-M~~~~~~p~~~~~~~Ll~a 628 (857)
....+-.+....|+++.|...|++.... .|| ...|...-..+.-+|+.++|.+.+++ +...|.+.-..+..-.+..
T Consensus 340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 340 ILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 6666666677788899999999998774 454 34555555566678999999999999 6656666655555555555
Q ss_pred hhhcc
Q 003016 629 NEDRI 633 (857)
Q Consensus 629 ~~~~g 633 (857)
|..++
T Consensus 418 ~~~~~ 422 (458)
T PRK11906 418 YVPNP 422 (458)
T ss_pred HcCCc
Confidence 55444
No 277
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=70.99 E-value=15 Score=32.03 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
..+.|+.....+.|.+|.+..++..|.++|+.++.++.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 445566666666666666666666666666666654433333555444
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.69 E-value=1.5e+02 Score=31.46 Aligned_cols=142 Identities=10% Similarity=0.036 Sum_probs=91.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHH
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYEL 402 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~l 402 (857)
.....|++.+|..+|+......-.-+... -.|...|...|+.+.|..++..++...-........+-
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~-------------~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAK-------------LLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHH-------------HHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 45678999999999999887644333333 47889999999999999999998765433322222223
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhc
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRN 479 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~ 479 (857)
|..+.+.....+...+-.+.-. .| |...-..+-..+...|+.+.|.+.+-.+.+ .-..|...-..|+..+.-.
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~ 285 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAF 285 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhc
Confidence 4444444444444444444433 35 555566777788888999998887766655 2334555566666666665
Q ss_pred CC
Q 003016 480 DM 481 (857)
Q Consensus 480 g~ 481 (857)
|.
T Consensus 286 g~ 287 (304)
T COG3118 286 GP 287 (304)
T ss_pred CC
Confidence 53
No 279
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=70.41 E-value=1.1e+02 Score=29.64 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcC-CChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQK-PSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
...+......+...+.+..+...+...... . .......+......+...+++..+...+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELEL---------------LPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh---------------ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455555556666666666666665555431 1 233444555555555556666666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHH-HHHHcCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVR-AFWEEGKINEAVAAVRNMEQRGV--VGTASVYYELACCLCNNGRWQDAMLVV 419 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~-~y~k~g~~~~A~~lf~~m~~~~~--~~d~~t~~~lI~~~~~~g~~~~A~~l~ 419 (857)
....+.... ..... .|...|+++.|...|........ ......+......+...++.+.|...+
T Consensus 124 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 190 (291)
T COG0457 124 LDPDPDLAE-------------ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELL 190 (291)
T ss_pred CCCCcchHH-------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHH
Confidence 433331111 11222 56666777777777776644221 112223333333456667777777777
Q ss_pred HHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 420 EKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 420 ~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..... .... ....+..+-..+...+..+.+...+.......+.....+..+...+...+..+++...+.......
T Consensus 191 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 191 EKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77765 2222 355666666777777777788777777766322224444444444556677888888888877644
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.17 E-value=1e+02 Score=29.55 Aligned_cols=61 Identities=15% Similarity=0.296 Sum_probs=37.9
Q ss_pred HHHHHHHHH---HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHcC
Q 003016 230 VYTKLLAIL---GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-AVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 230 ~~n~Li~~y---~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+.+.||... .+.++.+++..+++.|.. +.|.....-.+ ...+.+.|++.+|..+|+++...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 344444433 355788888888888875 34554333222 23456778888888888887654
No 281
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.92 E-value=1.1e+02 Score=29.72 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=67.9
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH-
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV- 315 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~- 315 (857)
+++.+..++|+.-|..+... |..- .+-.--.+.....+.|+...|...|+++-... ..|-..
T Consensus 68 lA~~~k~d~Alaaf~~lekt-g~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---------------~~P~~~r 131 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKT-GYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---------------SIPQIGR 131 (221)
T ss_pred HHHcCCchHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---------------CCcchhh
Confidence 35566777777777777663 2211 01111122334566777777777777776543 233222
Q ss_pred HHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q 003016 316 VYNAVLNA--CVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV 393 (857)
Q Consensus 316 t~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~ 393 (857)
-..-|=.+ +...|.++.+..-.+-+-..|-..-... -.+|--+-.+.|++..|.+.|..+.+....
T Consensus 132 d~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sA------------rEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 132 DLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSA------------REALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHH------------HHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 11111112 3456677666655555443321111111 256666667778888888888777664444
Q ss_pred C
Q 003016 394 G 394 (857)
Q Consensus 394 ~ 394 (857)
|
T Consensus 200 p 200 (221)
T COG4649 200 P 200 (221)
T ss_pred c
Confidence 4
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=69.14 E-value=9.6 Score=26.20 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMR 291 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~ 291 (857)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888744
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=68.71 E-value=16 Score=26.37 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
+|..+...|.+.|++++|..+|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555556666666666666665554
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=68.67 E-value=11 Score=25.94 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999854
No 285
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.06 E-value=95 Score=29.29 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=68.6
Q ss_pred HHHhcCCCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHhh-C-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 003016 421 KIKSLRHSKPLEIT--FTGLIISSMDGGHIDDCISIFQHMKD-H-----CEPNIGTVNAMLKVYSRNDM-FSKAKELFEE 491 (857)
Q Consensus 421 ~m~~~~g~~pd~~t--~~~ll~a~~~~g~~~~A~~if~~m~~-~-----~~p~~~~~~~li~~~~~~g~-~~~A~~lf~~ 491 (857)
.|++ .+..++..+ +++++.-.+..+.+.-..++++.+.. . -..+-.+|.+++.+.++..- --.+..+|.-
T Consensus 27 y~~~-~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 27 YMQE-ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred Hhhh-cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3444 555565543 67888887888888888888777754 1 13466778999999977766 5567889999
Q ss_pred HHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhc
Q 003016 492 TTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATA 527 (857)
Q Consensus 492 M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~ 527 (857)
|++.+ .+++..-|..+|.+|.+.
T Consensus 106 Lk~~~-------------~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 106 LKKND-------------IEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHcC-------------CCCCHHHHHHHHHHHHcC
Confidence 99877 788888999999988775
No 286
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.48 E-value=2.3e+02 Score=33.46 Aligned_cols=156 Identities=15% Similarity=0.027 Sum_probs=92.4
Q ss_pred HHhcCCHHHHHHHHHHHHH-------cCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC-----CHHHHHHHHHHHHHc
Q 003016 476 YSRNDMFSKAKELFEETTR-------ANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH-----QWEYFEYVYKGMALS 543 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~-------~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g-----~~~~a~~l~~~m~~~ 543 (857)
++...+.+.|+.+|..+.+ .| +......+-.+|.+.. +.+.|..++....+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~----------------~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG----------------LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc----------------CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 4456677777777777655 22 2224444555555532 677899999988887
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhhhCCCccCHH
Q 003016 544 GCQLDQTKHAWLLVEASR-AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI--VQSNYEKAVALINAMAYAPFHITER 620 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~-~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~--~~g~~~~A~~l~~~M~~~~~~p~~~ 620 (857)
|. |+....-..+..... ..+...|.++|......|..+ ...+-+++-... ...+.+.|..++++....| .|...
T Consensus 323 g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~ 399 (552)
T KOG1550|consen 323 GN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAA 399 (552)
T ss_pred CC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhH
Confidence 74 455444333333322 245778999999998887533 222222222222 2347889999999987777 44433
Q ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 621 QWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 621 ~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
--...+.+++. +....+.-....+.+.|..
T Consensus 400 ~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 400 YLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 33333444444 6666666666666666655
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.77 E-value=44 Score=29.33 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 003016 378 NEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 440 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 440 (857)
-+..+-++.+-..+++|+..+..+.+.+|-+..++..|+.+|+.++.+.+..-+ .|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 367777888888999999999999999999999999999999999985554433 5665554
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.87 E-value=3.1e+02 Score=33.00 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
..|...|...+++..|..++-..++.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccCh
Confidence 45777777777777777776655443
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.73 E-value=41 Score=29.17 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 567 LLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 567 ~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
++.+-++.+....+.|++.+..+-+.+|.|-+++.-|+++|+...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444566666666666666666666666666666543
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=62.60 E-value=1.5e+02 Score=28.52 Aligned_cols=223 Identities=14% Similarity=0.085 Sum_probs=149.2
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE-PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~-pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
.+....+...+....... .. .....+......+...+.+..+...+.........+.....
T Consensus 36 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (291)
T COG0457 36 LGELAEALELLEEALELL---------------PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA--- 97 (291)
T ss_pred HhhHHHHHHHHHHHHhcC---------------ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHH---
Confidence 455566666666665542 11 13567777888888999999998888887653112222221
Q ss_pred HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcCCC--CCcH
Q 003016 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELAC-CLCNNGRWQDAMLVVEKIKSLRHS--KPLE 432 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~-~~~~~g~~~~A~~l~~~m~~~~g~--~pd~ 432 (857)
+..+...+...+....+...+.........+.. ....... .+...|+++.|...|.+... ... ....
T Consensus 98 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 167 (291)
T COG0457 98 --------LLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALE-LDPELNELA 167 (291)
T ss_pred --------HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchH
Confidence 256677777888899999999988775544421 1223333 78899999999999999844 221 1233
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEP-NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK 511 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~ 511 (857)
..+......+...+..+.+...+......... ....+..+-..+...+.++.|...+.......
T Consensus 168 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------- 232 (291)
T COG0457 168 EALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--------------- 232 (291)
T ss_pred HHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC---------------
Confidence 44445555577888999999999998885555 57788888888999999999999999888744
Q ss_pred CC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 512 PD-EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 512 pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
|+ ...+..+...+...+..+.+...+.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 233 PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33333444444455556666666666554
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=61.99 E-value=19 Score=23.96 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|..+...|...|++++|+..|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468888999999999999999999988743
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.00 E-value=74 Score=36.81 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLR 341 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~ 341 (857)
.-|..|-.+....+++..|.+.|...+
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345555555555555555555554443
No 293
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=60.50 E-value=1.2e+02 Score=28.46 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
...|+.-.. ..+.|+++.|.+.|+.+..+....| ....--.++.+|-+.+++++|...+++..+..
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344444433 3467889999999998887532222 23455667788888999999998888887754
No 294
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=60.41 E-value=1.4e+02 Score=28.22 Aligned_cols=52 Identities=13% Similarity=0.247 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 275 GQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD---LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 275 ~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
...++.+++..+++.|.- +.|+ ..++-..| +.+.|+|.+|.++|+++.+.+.
T Consensus 21 L~~~d~~D~e~lLdALrv-----------------LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV-----------------LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HhcCCHHHHHHHHHHHHH-----------------hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC
Confidence 347889999999999875 4444 33444443 6789999999999999988753
No 295
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=60.39 E-value=2.2e+02 Score=29.63 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=33.1
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
.+.|++++|.+.|+.+..+....| ...+--.++-++-+.+++++|+..+++..+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 356777777777777776422211 2334444555666777777777777776554
No 296
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.96 E-value=2.4e+02 Score=29.99 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=64.6
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH---h
Q 003016 441 SSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT---Y 517 (857)
Q Consensus 441 a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t---~ 517 (857)
.....|++.+|..+|+......+-+...--.|..+|...|+.+.|..++..+...- -...... .
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------------~~~~~~~l~a~ 209 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------------QDKAAHGLQAQ 209 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-------------hhhHHHHHHHH
Confidence 34556777777777777766444455666667777777888888888877765432 1111112 1
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 518 SSMLEASATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
..++.-....++.....+-+. -.| |...-..+-..|...|+.++|.+.+-.+..+
T Consensus 210 i~ll~qaa~~~~~~~l~~~~a------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLA------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122222222233333322222 234 4445555666677777777776666555443
No 297
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=58.79 E-value=3e+02 Score=30.71 Aligned_cols=119 Identities=11% Similarity=0.019 Sum_probs=64.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH--HHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHH---HH----
Q 003016 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC--LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL---II---- 440 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~--~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l---l~---- 440 (857)
.+.-.|+.++|..+--...+.+... .+...+.+ +-.+++.+.|...|.+-.. ..|+...--.+ ..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n---~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATN---AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccch---hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3445577777766655554443221 13333333 2345677777777777654 34554332222 11
Q ss_pred ------HHHcCCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 441 ------SSMDGGHIDDCISIFQHMKD----HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 441 ------a~~~~g~~~~A~~if~~m~~----~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
-..+.|.+..|.+.+.+... +..++...|...-....+.|+..+|+.--++...
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 12356666666666666654 2445555566566666666666666666665543
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=58.36 E-value=23 Score=24.56 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666666666666666666665543
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.92 E-value=1.8e+02 Score=27.95 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=24.0
Q ss_pred cCCCHHHHHHHHHHHhh-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 444 DGGHIDDCISIFQHMKD-H-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~-~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
+.++.+++..+++.+.- . -.+...++-. ..+.+.|+|.+|..+|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 44555555555555543 1 1112222222 2245566666666666665543
No 300
>PRK09687 putative lyase; Provisional
Probab=57.66 E-value=2.6e+02 Score=29.69 Aligned_cols=131 Identities=10% Similarity=-0.028 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 366 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG-RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 366 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+.++++.++ .+|...+-.+.+. +|..+-...+.++.+.+ ....+...+..+.. .+|..+-...+.++.+
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLAL 218 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHc
Confidence 34445555554 3344444444331 22233444444555442 13345555555543 2455666667777777
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHH
Q 003016 445 GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEAS 524 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~ 524 (857)
.|...-.-.+.+.+.. ++ ..-..+.+++..|.. +|...+..+.... ||...-...+.+|
T Consensus 219 ~~~~~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~---------------~d~~v~~~a~~a~ 277 (280)
T PRK09687 219 RKDKRVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKF---------------DDNEIITKAIDKL 277 (280)
T ss_pred cCChhHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC---------------CChhHHHHHHHHH
Confidence 7774433333333332 22 234667778888874 6888888777644 6666665555555
Q ss_pred H
Q 003016 525 A 525 (857)
Q Consensus 525 ~ 525 (857)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 4
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=57.26 E-value=23 Score=23.50 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677888888888888888888888766
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=56.60 E-value=25 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35778888889999999999998888765
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=56.14 E-value=1.9e+02 Score=27.52 Aligned_cols=70 Identities=17% Similarity=0.171 Sum_probs=42.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-CCHHHHHHHH
Q 003016 325 VPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GTASVYYELA 403 (857)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-~d~~t~~~lI 403 (857)
...++++++..++..|+-. .|+..-.. ..-.-.+...|++++|.++|++..+.+.. | |..-+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d-----------~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p----~~kAL 83 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELD-----------MFDGWLLIARGNYDEAARILRELLSSAGAPP----YGKAL 83 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccc-----------hhHHHHHHHcCCHHHHHHHHHhhhccCCCch----HHHHH
Confidence 3478888888888888753 34333210 11223456788888888888888877633 4 55555
Q ss_pred HHHHHCCC
Q 003016 404 CCLCNNGR 411 (857)
Q Consensus 404 ~~~~~~g~ 411 (857)
.++|-...
T Consensus 84 ~A~CL~al 91 (153)
T TIGR02561 84 LALCLNAK 91 (153)
T ss_pred HHHHHHhc
Confidence 55554433
No 304
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=55.46 E-value=2.8e+02 Score=29.42 Aligned_cols=135 Identities=7% Similarity=0.068 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc--CCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 003016 410 GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD--GGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKA 485 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~--~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A 485 (857)
....+|+.+|+.......+--|..+...+++.... ......-.++.+.+.. +-.++..+...+|..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 33455666665322211234455555555544433 1122333334444443 2556777778888888888888888
Q ss_pred HHHHHHHHHc-CCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHH
Q 003016 486 KELFEETTRA-NSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG-----MALSGCQLDQTKHAWLLV 557 (857)
Q Consensus 486 ~~lf~~M~~~-g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~-----m~~~g~~pd~~t~~~Ll~ 557 (857)
.++|+.-... + ..-|...|..+|......|+..-...+..+ +.+.|+..+...-..+-.
T Consensus 222 ~~fW~~~~~~~~-------------~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 222 FQFWEQCIPNSV-------------PGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHhcccCC-------------CCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 8888876543 2 334777888888888888887655544432 223344555544444433
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=55.14 E-value=17 Score=24.64 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHH
Q 003016 226 KSRFVYTKLLAILGKAGRPHEAL 248 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~ 248 (857)
.+..+|+.|-..|...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 36777888888888888877775
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.46 E-value=5e+02 Score=31.70 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLG----DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 157 ~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~----~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
.....++.+.+...+.-|+.+-+.- ..+..+...+...|+ +.|+.+.|..-+-+.+.. ..| .
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~----le~-----s 401 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF----LEP-----S 401 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc----CCh-----H
Confidence 4456668888888888888775542 245566666666655 458888888777655432 112 2
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.+|.-|....++..-...++.+.+. |+ .+...-+.||.+|.+.++.+...++.+... .| ...-
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g--------------~~~f 464 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KG--------------EWFF 464 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cc--------------ceee
Confidence 3455555555566666666766663 43 345555678888888888887776665544 22 0111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
| ....+..|-+.+-.++|..+-..
T Consensus 465 d---~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 465 D---VETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred e---HHHHHHHHHHhChHHHHHHHHHH
Confidence 2 23455666666666666554443
No 307
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=51.65 E-value=40 Score=22.09 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..|..+-..|.+.|++++|++.|++.....
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 356777888899999999999999887743
No 308
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.78 E-value=1.7e+02 Score=29.28 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHcCCCHHHHH
Q 003016 377 INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR--HSKPLEITFTGLIISSMDGGHIDDCI 452 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~--g~~pd~~t~~~ll~a~~~~g~~~~A~ 452 (857)
-+.|.+.|-.+...+..-++....++..-|. ..+.++|..++....+.. +-.+|+..+.+|.+.+-+.|+++.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3677888888887777766665555555444 567788888777766522 22456666777777777777666653
No 309
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=50.27 E-value=46 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=19.1
Q ss_pred HHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 003016 595 IVQSNYEKAVALINAMAYAPFHITERQWTELFE 627 (857)
Q Consensus 595 ~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~ 627 (857)
.+.|...++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666666655555544
No 310
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=50.23 E-value=4.5e+02 Score=30.19 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=45.3
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC--HHHHHHHH
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN--IGTVNAML 473 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~--~~~~~~li 473 (857)
--+..++-+.|+.++|++.|++|.+.....-+....-.||.++...+.+.++..++.+-.+-..|. ..+|++.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 345556667788888888888876522111223356677778888888888888777765422222 34455544
No 311
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.15 E-value=1.6e+02 Score=30.97 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=60.6
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-
Q 003016 519 SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ- 597 (857)
Q Consensus 519 ~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~- 597 (857)
.=|.|++..+++.+++...-+--..--+.-+.+.-..|-.|++.|....+.++-..-....-.-+..-|.++...|..+
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3467899999999887655443322112223445556667999999998888887766642222333488888877775
Q ss_pred ----CCHHHHHHHH
Q 003016 598 ----SNYEKAVALI 607 (857)
Q Consensus 598 ----g~~~~A~~l~ 607 (857)
|.+++|.+++
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 9999999988
No 312
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.06 E-value=3.4e+02 Score=28.82 Aligned_cols=148 Identities=13% Similarity=0.059 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH-------Hhh--------------
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN-------MEQ-------------- 389 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~-------m~~-------------- 389 (857)
.+|+++|..+....-+|=. - +-+|.++....+...|...|.. |..
T Consensus 150 ~KA~ELFayLv~hkgk~v~--~------------~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~ 215 (361)
T COG3947 150 RKALELFAYLVEHKGKEVT--S------------WEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRK 215 (361)
T ss_pred hHHHHHHHHHHHhcCCccc--H------------hHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCc
Confidence 6789999998775422211 1 4566677776666666555443 211
Q ss_pred -----cCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCCc-----------------HHHHHHHHHHHHcCC
Q 003016 390 -----RGVVGTASVYYELACCLCN-NGRWQDAMLVVEKIKSLRHSKPL-----------------EITFTGLIISSMDGG 446 (857)
Q Consensus 390 -----~~~~~d~~t~~~lI~~~~~-~g~~~~A~~l~~~m~~~~g~~pd-----------------~~t~~~ll~a~~~~g 446 (857)
.++..|..-|-+.+..... +-.++++.++....+. +.-|+ ..+++....+|..+|
T Consensus 216 Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly~kllgkva~~yle~g 293 (361)
T COG3947 216 YKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAG 293 (361)
T ss_pred eEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1233455555555544332 2346666666666543 22222 112455567899999
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+.+|.++.+....--+.+...|-.++..++..|+--.|.+-++.|.+
T Consensus 294 ~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 294 KPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred ChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 999999999999886667888899999999999997777777776643
No 313
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.83 E-value=3.6e+02 Score=28.67 Aligned_cols=118 Identities=7% Similarity=0.048 Sum_probs=86.9
Q ss_pred HcCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH
Q 003016 373 EEGKINEAVAAVRNMEQ-RGVVGTASVYYELACCLCN-NG-RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 449 (857)
Q Consensus 373 k~g~~~~A~~lf~~m~~-~~~~~d~~t~~~lI~~~~~-~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 449 (857)
+...+.+|+++|+.... ..+.-|..+...++..... .+ ....-.++.+-+....+..++..+...+|..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 34456788888885443 3466777777777777666 22 233333455555554567888899999999999999999
Q ss_pred HHHHHHHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003016 450 DCISIFQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFE 490 (857)
Q Consensus 450 ~A~~if~~m~~~--~~p~~~~~~~li~~~~~~g~~~~A~~lf~ 490 (857)
.-.++++..... ...|...|...|......|+..-..++.+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 999999988763 56688999999999999999766555544
No 314
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.36 E-value=3.4e+02 Score=28.33 Aligned_cols=273 Identities=10% Similarity=0.100 Sum_probs=154.8
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC--CCcHHHHHHHHHHHHcC
Q 003016 373 EEGKINEAVAAVRNMEQRGVVGTAS---VYYELACCLCNNGRWQDAMLVVEKIKSL--RHS--KPLEITFTGLIISSMDG 445 (857)
Q Consensus 373 k~g~~~~A~~lf~~m~~~~~~~d~~---t~~~lI~~~~~~g~~~~A~~l~~~m~~~--~g~--~pd~~t~~~ll~a~~~~ 445 (857)
+....++|+.-|++..+..-.-... ..-.||..+.+.|++++.++.|.+|..- ..+ .-+..+.|++++..+-+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457788888888876543221111 2455789999999999999999988751 011 12345678888888777
Q ss_pred CCHHHHHHHHHHHhh--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC---CHhH
Q 003016 446 GHIDDCISIFQHMKD--HCEPNIG----TVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP---DEYT 516 (857)
Q Consensus 446 g~~~~A~~if~~m~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p---d~~t 516 (857)
.+.+.-..+++.-.+ .-..|.. |-+-|-..|...|.+.+-.++++++...- ..+.+....+. =...
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SC-----q~edGedD~kKGtQLLEi 193 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSC-----QTEDGEDDQKKGTQLLEI 193 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHh-----ccccCchhhhccchhhhh
Confidence 777776666655433 1112222 22556677888888888888888876543 00111111111 1235
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HHcCCHHHHHH-HHHHHHH---CCCCCCHH-
Q 003016 517 YSSMLEASATAHQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEA-----SRAGKCHLLEH-AFDSLLE---AGEIPHPL- 585 (857)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~-----~~~G~~~~A~~-~~~~m~~---~gi~p~~~- 585 (857)
|..-|..|....+-.....++++.+.- .--|.+... .+|.-| .+.|.+++|.. +|+..+. .|- |...
T Consensus 194 YAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRtt 271 (440)
T KOG1464|consen 194 YALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTT 271 (440)
T ss_pred HhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhH
Confidence 777778888888888888888876643 233444433 344444 46688887653 4444443 242 3222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHhhhCCC--ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 586 --FFTEMLIQAIVQSNYEKAVALINAMAYAPF--HITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 586 --~~~~li~~~~~~g~~~~A~~l~~~M~~~~~--~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
-|-.|...+.+.| +.-|+.-...|+ .|.....+.|+.|+.+ .+..+.+++++.=+ ..+. .+|.+...
T Consensus 272 CLKYLVLANMLmkS~-----iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~-~~IM-~DpFIReh 342 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSG-----INPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNR-SNIM-DDPFIREH 342 (440)
T ss_pred HHHHHHHHHHHHHcC-----CCCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhh-cccc-ccHHHHHH
Confidence 2223333333332 111221122244 3455678889988865 45666666664433 2333 55655544
No 315
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=48.21 E-value=27 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHH
Q 003016 462 CEPNIGTVNAMLKVYSRNDMFSKAK 486 (857)
Q Consensus 462 ~~p~~~~~~~li~~~~~~g~~~~A~ 486 (857)
-+-|...|+.+-..|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3456788888888888888888875
No 316
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=48.05 E-value=4.5e+02 Score=29.60 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 589 EMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.|+.-|...|...+|...++++- .|+--..+.+.+++.+..+.++-.....+++.....|+.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLg-mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELG-MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhC-CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 35556666677777777666641 133334456666666666666666666666665555544
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.61 E-value=1.7e+02 Score=34.13 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=66.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~L 555 (857)
..+.|+++.|.++-.+. -+..-|..|-.+....+++..|.+.|..... |..|
T Consensus 647 al~lgrl~iA~~la~e~-------------------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~L 698 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-------------------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSL 698 (794)
T ss_pred hhhcCcHHHHHHHHHhh-------------------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhh
Confidence 34667777777666543 3456688888888888888888887776543 4566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 556 LVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 556 l~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
+-.+...|+.+....+-....+.|. .|.-..+|...|+++++++++..-
T Consensus 699 lLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 699 LLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777776655555555554443 233345566778888888877665
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=47.57 E-value=41 Score=22.06 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
..|..+-..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677778888888888888887765
No 319
>PHA02875 ankyrin repeat protein; Provisional
Probab=45.79 E-value=3.6e+02 Score=30.13 Aligned_cols=191 Identities=9% Similarity=-0.019 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHH
Q 003016 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 318 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~ 397 (857)
.+.+..++..|+.+ +.+.+.+.|..|+..... ..+.+...++.|+.+.+..+++.-....-..+..
T Consensus 36 ~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~----------~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 101 (413)
T PHA02875 36 ISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPD----------IESELHDAVEEGDVKAVEELLDLGKFADDVFYKD 101 (413)
T ss_pred CCHHHHHHHcCCHH----HHHHHHhCCCCccccCCC----------cccHHHHHHHCCCHHHHHHHHHcCCcccccccCC
Confidence 34556666777765 445666677766543110 1344556667888888777665422111111111
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT--FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
-+ +.+...+..|+.+-+ +.+.+ .|..|+... -.+.+...+..|+.+-+..+++.-..--..|..-++ .+..
T Consensus 102 g~-tpL~~A~~~~~~~iv----~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~T-pL~~ 174 (413)
T PHA02875 102 GM-TPLHLATILKKLDIM----KLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCT-PLII 174 (413)
T ss_pred CC-CHHHHHHHhCCHHHH----HHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC-HHHH
Confidence 11 223334556766433 33344 465554322 123444555677877666665432220111222222 3334
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH---hhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT---YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 550 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t---~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~ 550 (857)
.+..|+.+ +++.+.+.| ..|+... ..+.+...+..|+.+- .+.+.+.|..++..
T Consensus 175 A~~~g~~e----iv~~Ll~~g-------------a~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~~ 231 (413)
T PHA02875 175 AMAKGDIA----ICKMLLDSG-------------ANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNIM 231 (413)
T ss_pred HHHcCCHH----HHHHHHhCC-------------CCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcchH
Confidence 45566654 344455556 3343322 2244554455676654 44555567777643
No 320
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=44.89 E-value=4.6e+02 Score=28.77 Aligned_cols=204 Identities=14% Similarity=0.048 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHH-HHHhcCCCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHhh--CCCC---CHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVE-KIKSLRHSKPL---EITFTGLIISSMDGGHIDDCISIFQHMKD--HCEP---NIGT 468 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~-~m~~~~g~~pd---~~t~~~ll~a~~~~g~~~~A~~if~~m~~--~~~p---~~~~ 468 (857)
+|..+..+.+..|.+++++..-- +|.-.....-. ...|..+-.++-+.-++.+++.+=..-.. +..| .-..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 46666777788888777654321 11110000011 12344444444444444444444333222 2222 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc--CCC
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS--GCQ 546 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~--g~~ 546 (857)
.-+|-.++.-.+.++++++.|+...+..+. ..........+.++-+-|....++++|.-...+..+. .+.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~--------~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHN--------NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhc--------cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 334556666777899999999876653200 0001123346778888899999999888766554431 222
Q ss_pred CC--HHHH-----HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 547 LD--QTKH-----AWLLVEASRAGKCHLLEHAFDSLLE----AGEIP-HPLFFTEMLIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 547 pd--~~t~-----~~Ll~~~~~~G~~~~A~~~~~~m~~----~gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~~ 609 (857)
.+ ..-| ..+-.++-..|.+.+|.+.-++..+ .|-.| .....-++-+.|...|+.+.|+.-+++
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 11 1222 3344557788888888888776544 34332 234455667778888999998887776
No 321
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=44.86 E-value=4.3e+02 Score=28.50 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP---HPLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 549 ~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p---~~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
..++..+...+-+.|.++.|...+..+...+..+ .+...-.-...+-..|+..+|+..++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4467777888889999999999998887643111 223333445666677888999988887655
No 322
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.28 E-value=65 Score=23.95 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003016 161 LVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKG 199 (857)
Q Consensus 161 l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a 199 (857)
++....++|...++..+++.|.+.|+..+...|..+++.
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 345566788888999999999999999999888887764
No 323
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.51 E-value=3.3e+02 Score=29.29 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=65.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHH-cCCHHHHH
Q 003016 527 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFT-EMLIQAIV-QSNYEKAV 604 (857)
Q Consensus 527 ~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~-~li~~~~~-~g~~~~A~ 604 (857)
.--+-+|+++|+...+.| ..+|+. -..+.+.|...+| +.+++ .++.+|- .-+..|.+ .|+..+|.
T Consensus 229 a~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~da------~~rRD--tnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHEA------QLRRD--TNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchhh------hhhcc--cchhhHHHHHHHHHHHHhhhHHHHH
Confidence 345667888888777643 223331 1223333433333 22322 2333342 12334444 59999999
Q ss_pred HHHHHhhh-CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHH
Q 003016 605 ALINAMAY-APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNLSRALHA 666 (857)
Q Consensus 605 ~l~~~M~~-~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~l~~ 666 (857)
+.|+.+.. .++---..+-.+|+.+|-...-+..+..++....+... |+..++..-...+..
T Consensus 296 K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdisl-PkSA~icYTaALLK~ 357 (556)
T KOG3807|consen 296 KIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISL-PKSAAICYTAALLKT 357 (556)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC-cchHHHHHHHHHHHH
Confidence 99998543 33222223556788888777666666666655553332 355555433333333
No 324
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.32 E-value=3e+02 Score=25.98 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
+.++..+|...|.. ....|.+.+..++..++ ..|.+++-.+.-+++.....+++.+..
T Consensus 10 ~~~nL~~w~~fi~~------------~~~y~~~~~~~~~~k~~----------fiN~iL~hl~~~~nf~~~v~~L~~l~~ 67 (145)
T PF13762_consen 10 VLANLEVWKTFINS------------HLPYMQEENASQSTKTI----------FINCILNHLASYQNFSGVVSILEHLHF 67 (145)
T ss_pred hhhhHHHHHHHHHH------------HHHHhhhcccChhHHHH----------HHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 44566666666543 33456666677776554 137788777778888888877777632
Q ss_pred cCC-----CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC
Q 003016 390 RGV-----VGTASVYYELACCLCNNGR-WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445 (857)
Q Consensus 390 ~~~-----~~d~~t~~~lI~~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 445 (857)
-.. ..+...|.+++.+.++..- ---+..+|.-|++ .+.+++..-|..+|.+|.+.
T Consensus 68 l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 68 LNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred hhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 110 1233457777777755554 3345667777776 56677777777777776654
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=41.54 E-value=50 Score=21.76 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+|..+-..|.+.|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3577788888899999999999988776
No 326
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.86 E-value=1.3e+02 Score=30.44 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
|.+..++.+.+.+.+.+|+.....-.+.-+.|...-..+++.||-.|++++|..-++-.-.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 3445566777778888888887777665556677778899999999999999877765544
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=40.84 E-value=47 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 471 AMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 471 ~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+..+|.+.|++++|.+.|+++....
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35566778899999999999988765
No 328
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.83 E-value=7e+02 Score=29.78 Aligned_cols=166 Identities=17% Similarity=0.113 Sum_probs=89.4
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHH----HHH-HHHHHHHhcCCHHHHHHHHHHHHhCcCCC-CCCCHHHHHHH-HHHHH
Q 003016 167 EREMTAKNWKFVRIMNQSGLMFTEG----QML-KLLKGLGDKGSWRQAMSVLDWVYGLKDKR-DLKSRFVYTKL-LAILG 239 (857)
Q Consensus 167 ~~~~~~~A~~l~~~M~~~g~~p~~~----t~~-~ll~a~~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~n~L-i~~y~ 239 (857)
...++++|...+.+-...--.++-. ... .++..+.+.+... |+...+..+...... ..+-...+.-+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 4556777766666543222112222 222 3344455554444 888888876543221 11112333333 33333
Q ss_pred HcCChhHHHHHHHHhHHcCC--CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHcCCChhhhhhhhhc-CCC-CCCCC
Q 003016 240 KAGRPHEALRIFNLMLEDCN--LYPDIAAYHSVAVTLG--QVGLLKELVKLIERMRQKPSKRIKNMHRKN-WDP-VLEPD 313 (857)
Q Consensus 240 k~g~~~~A~~vf~~m~~~~g--i~pd~~t~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~-f~~-~~~pd 313 (857)
..+++..|.+.++.+..... ..|-+..+-.++.+.. +.+..+++.+..+++.... ++. +++ ...|-
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~--------~~~q~~~~~~~~q 222 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQA--------RSLQLDPSVHIPQ 222 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH--------hhcccCCCCCcHH
Confidence 34899999999998877432 2334555555555554 4465677777777764322 000 110 13456
Q ss_pred HHHHHHHHHHHH--hcCChHHHHHHHHHHH
Q 003016 314 LVVYNAVLNACV--PSHQWKGVFWVFKQLR 341 (857)
Q Consensus 314 ~~t~~~li~~~~--~~g~~~~A~~l~~~m~ 341 (857)
..+|..++..++ ..|+++.+...++++.
T Consensus 223 L~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 223 LKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677888888765 4677767776655553
No 329
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.66 E-value=8.2e+02 Score=30.50 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH-----HHHHHHH-H--HHhcCCHHHHHHHHHHHHcCC
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA-----AYHSVAV-T--LGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~-----t~~~li~-~--~~~~g~~~~A~~l~~~m~~~g 294 (857)
+..-+..+....++++|..+-+.... |++. .+..+.. + +..+|++++|++.|.++....
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~-----~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~ 376 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS-----PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDP 376 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC-----CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCh
Confidence 44445555555556666655444332 3322 2222222 1 345667777777777776554
No 330
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=39.53 E-value=4.3e+02 Score=26.90 Aligned_cols=85 Identities=20% Similarity=0.116 Sum_probs=52.6
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHH--HHhcCC
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVT--LGQVGL 279 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~--~~~~g~ 279 (857)
..|-+..|+-=|.+.....++ -..+||-|---+...|+++.|.+.|+...+- .| ..-|..+=++ +--.|+
T Consensus 77 SlGL~~LAR~DftQaLai~P~----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---Dp-~y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---DP-TYNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCC----cHHHHHHHHHHHHhcccchHHHHHhhhHhcc---CC-cchHHHhccceeeeecCc
Confidence 334455555555554433221 3567888888888999999999999998872 22 2334333333 234588
Q ss_pred HHHHHHHHHHHHcCC
Q 003016 280 LKELVKLIERMRQKP 294 (857)
Q Consensus 280 ~~~A~~l~~~m~~~g 294 (857)
+.-|.+=|-..-+..
T Consensus 149 ~~LAq~d~~~fYQ~D 163 (297)
T COG4785 149 YKLAQDDLLAFYQDD 163 (297)
T ss_pred hHhhHHHHHHHHhcC
Confidence 888887776665543
No 331
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.53 E-value=62 Score=34.34 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 344 GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 344 g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
-+.||..+| ||.-|..-.+.|++++|++++++.++.|+..-..||
T Consensus 251 ~v~~dTe~Y-----------y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 251 PMLNDTESY-----------FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred ccCchHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 467899998 899999999999999999999999999887644443
No 332
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=38.62 E-value=3e+02 Score=27.33 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHcCCHHHHHHHHHHHhhcC--CCCCHHHHHHHHH-HHHHCCC--HHHHHHHHHHHHhcCCCCCc
Q 003016 370 AFWEEGKINEAVAAVRNMEQRG--VVGTASVYYELAC-CLCNNGR--WQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~--~~~d~~t~~~lI~-~~~~~g~--~~~A~~l~~~m~~~~g~~pd 431 (857)
.....|++++|..-++++.+.= +..-...|..+.. +++.++. +-+|..+|.-... +..|.
T Consensus 38 ~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~--~~~ps 102 (204)
T COG2178 38 FLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD--GRLPS 102 (204)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc--CCCCC
Confidence 3456688888888888775421 1111112555555 6777765 5567777766665 44444
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=37.65 E-value=49 Score=20.77 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=10.3
Q ss_pred HHHHHHHHcCChhHHHHHHH
Q 003016 233 KLLAILGKAGRPHEALRIFN 252 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~ 252 (857)
.|...+...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 334
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.46 E-value=84 Score=33.74 Aligned_cols=52 Identities=12% Similarity=-0.042 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
+-|.+.|.+++|..+|..-.. +.| |.+++..-..+|.+...+..|..--...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia-----------------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA-----------------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc-----------------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 457889999999999987665 456 8888888888898888777665444333
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.01 E-value=94 Score=33.39 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=50.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003016 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 552 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~ 552 (857)
.-|.+.|.+++|++.|..-.. +.| |.+++..-..||.+...+..|+.=-...+.. |
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---------------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d---- 161 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---------------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D---- 161 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---------------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----
Confidence 357899999999999988765 447 8899999899999988877666544443321 1
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 003016 553 AWLLVEASRAGKCHLLEH 570 (857)
Q Consensus 553 ~~Ll~~~~~~G~~~~A~~ 570 (857)
...+.+|++.|....++.
T Consensus 162 ~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 162 KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 234566666554333333
No 336
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.53 E-value=1.7e+02 Score=26.81 Aligned_cols=57 Identities=9% Similarity=0.116 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 416 MLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 416 ~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+-++.+.. ..+.|+....-.-+.+|.+..++..|.++|+.++..+.+.-..|-.++
T Consensus 69 rkglN~l~~-yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFD-YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhc-cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334444444 567788888888888888888888888888888875555544555544
No 337
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=36.23 E-value=2.2e+02 Score=28.01 Aligned_cols=79 Identities=14% Similarity=0.019 Sum_probs=39.0
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCH-HHHHHHHHHHHHcC----CHHHHHHHHHHHHHC-----CC
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALS-----GCQLDQ-TKHAWLLVEASRAG----KCHLLEHAFDSLLEA-----GE 580 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~-----g~~pd~-~t~~~Ll~~~~~~G----~~~~A~~~~~~m~~~-----gi 580 (857)
-|...|.-+++.....++..++++.+.. .+.|+. .++.++-.+|...+ +..+|..+|+...+. ..
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4666666666666655665555554432 467775 47777776665433 233344444333221 24
Q ss_pred CCCHHHHHHHHHHH
Q 003016 581 IPHPLFFTEMLIQA 594 (857)
Q Consensus 581 ~p~~~~~~~li~~~ 594 (857)
.|+..+|..-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 56666666555544
No 338
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=36.07 E-value=5.2e+02 Score=26.90 Aligned_cols=186 Identities=15% Similarity=0.073 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 395 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d 395 (857)
.|+.-+. -.+.|++++|...|+.+...- .-+..+=- +.-.++-++-+.++.++|...+++..+.-....
T Consensus 37 LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~q---------a~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 37 LYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQ---------AQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHH---------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 3444333 446677888888887776542 11111110 013456666677777777777777665433322
Q ss_pred HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHH
Q 003016 396 ASVYYELACCLCNNG-------RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGT 468 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g-------~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~ 468 (857)
..-|-.-|.|++.-- +...+..-|..|. .+|.-|=.+.-...|..-...+... =...
T Consensus 106 n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~-------------~~i~ryPnS~Ya~dA~~~i~~~~d~---LA~~ 169 (254)
T COG4105 106 NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFK-------------ELVQRYPNSRYAPDAKARIVKLNDA---LAGH 169 (254)
T ss_pred ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHH-------------HHHHHCCCCcchhhHHHHHHHHHHH---HHHH
Confidence 223555566655321 1122222222222 2222222222233333322222210 0011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
=-.+..-|.+.|.+..|..-|++|.+.-.. ..-....+-.+..+|...|..++|...-.-
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~y~~-----------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLENYPD-----------TSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccc-----------ccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 123445667777777777777777765400 001122344455566666666666554443
No 339
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=36.05 E-value=6.2e+02 Score=27.79 Aligned_cols=213 Identities=12% Similarity=0.076 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC---HHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDL--KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD---IAA 266 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd---~~t 266 (857)
+|..+..+.++.|..++++..--..+........ .-...|-.|-.++-+--++.+++.+-..-....|..|. -..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4555556666666655554432221111000000 01234555555666666666666665554443333331 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK---- 342 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~---- 342 (857)
..+|-.++.-.+.++.+++.|+...+...+ .-|++ .....|..+-+.|.+..++++|.-+.....+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~--------~~D~~--LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHN--------NDDAM--LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhc--------cCCce--eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 445667777778899999999887653200 01111 1234678888889999999998877666543
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCCHHH----HHHHHHHHHHCCCHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGTASV----YYELACCLCNNGRWQDAML 417 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d~~t----~~~lI~~~~~~g~~~~A~~ 417 (857)
.|+.-=..-|..+. .--|.-++-..|.+.+|.+.-++..+-.+ ..|..+ .-.|.+.|-..|+.+.|+.
T Consensus 195 ~~l~d~~~kyr~~~-------lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMS-------LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred cCcCchhHHHHHHH-------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 22221111221111 12233455566666666666655332211 112222 2234445555666666655
Q ss_pred HHHH
Q 003016 418 VVEK 421 (857)
Q Consensus 418 l~~~ 421 (857)
-|++
T Consensus 268 rYe~ 271 (518)
T KOG1941|consen 268 RYEQ 271 (518)
T ss_pred HHHH
Confidence 5544
No 340
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.57 E-value=2.1e+02 Score=25.51 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
|..++.-|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88888888888888888888888765
No 341
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.47 E-value=28 Score=32.16 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCL 406 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~ 406 (857)
.|.-.+|..+|..|.++|-.||. |+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 46667788999999999998886 88887653
No 342
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=34.81 E-value=2.2e+02 Score=26.11 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 332 GVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 332 ~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
.+.++|..|...|+.-....| |..-...+.+.|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~f-----------Y~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALF-----------YEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHH-----------HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHh
Confidence 899999999999998887776 78888888999999999999874
No 343
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.80 E-value=4.7e+02 Score=25.67 Aligned_cols=136 Identities=11% Similarity=0.049 Sum_probs=93.3
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH-AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL-FFTEMLI 592 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~-~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~-~~~~li~ 592 (857)
.+|..-|. .+..+..++|+.-|..+.+.|...-++.- ...-...+..|+...|...|+++-...-.|-.. -...|=.
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 44555444 45668889999999999998876555422 112223578899999999999998765555433 2222222
Q ss_pred --HHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 593 --QAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 593 --~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
.+..+|.++......+-+...+...-...-..|--+.-+.|++..+.+.+..+.+-...
T Consensus 139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a 199 (221)
T COG4649 139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA 199 (221)
T ss_pred HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence 34457999999888887765554444445566666778889999999999998874444
No 344
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=33.11 E-value=32 Score=25.11 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=17.8
Q ss_pred hHHHHHHHhcCCCCChHHHHHhhH
Q 003016 2 EKIKQKLLKHGVFPTPKILRSIRK 25 (857)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (857)
+.||+.|.++|+.|.|= ..+-|+
T Consensus 9 ~eL~~~L~~~G~~~gPI-t~sTR~ 31 (44)
T smart00540 9 AELRAELKQYGLPPGPI-TDTTRK 31 (44)
T ss_pred HHHHHHHHHcCCCCCCc-CcchHH
Confidence 46899999999999996 344443
No 345
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=33.10 E-value=1.4e+02 Score=29.53 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred HcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 240 KAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 240 k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
...+.+......+.+.+-....|+...|..++.++...|+.++|.++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444433333332234588888888888888888888888888887653
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.57 E-value=1.6e+02 Score=31.06 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHCCCCCCH-----------------HHHHHHHHHHHhcCCHHHHHHH
Q 003016 151 WRSEAEAIRVLVDRLSERE-MTAKNWKFVRIMNQSGLMFTE-----------------GQMLKLLKGLGDKGSWRQAMSV 212 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~-~~~~A~~l~~~M~~~g~~p~~-----------------~t~~~ll~a~~~~g~~~~A~~l 212 (857)
-..|+..+...++.+.... ..+++-++...-... .-|.. .+++.+.++|..+|.+.+|.++
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l 301 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQL 301 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4456677777777666543 345555444443211 11111 1222334445555555555555
Q ss_pred HHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHh
Q 003016 213 LDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLM 254 (857)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m 254 (857)
++..+.. ++.+...|-.|+..|+..|+--.|.+-++++
T Consensus 302 ~qr~ltl----dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 302 HQRALTL----DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHhhc----ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 5554432 2234555555555555555554444444444
No 347
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.46 E-value=2.3e+02 Score=24.19 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=23.8
Q ss_pred HcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHH
Q 003016 373 EEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 373 k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A 415 (857)
..|+.+.|.+++..+. +|..- |...+.++-..|...-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~a----F~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGW----FSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcH----HHHHHHHHHHcCchhhh
Confidence 4466777777777776 55443 66666666666665544
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=31.85 E-value=2.5e+02 Score=28.49 Aligned_cols=77 Identities=6% Similarity=-0.003 Sum_probs=52.0
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPHPLFFTEMLIQ 593 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~--gi~p~~~~~~~li~~ 593 (857)
|.+..++.+.+.+.+.+++.+.++-++.. +.|.-+-..++..|+-.|++++|..-++...+. ...+-...|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667777788888888877766642 233445566777788889999888888766554 344455666666654
No 349
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=31.63 E-value=97 Score=20.28 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566667777777777777777777654
No 350
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=30.39 E-value=1.1e+03 Score=28.72 Aligned_cols=182 Identities=10% Similarity=0.078 Sum_probs=99.4
Q ss_pred HHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH----------HHHHHHHHHHhcCCH
Q 003016 211 SVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA----------AYHSVAVTLGQVGLL 280 (857)
Q Consensus 211 ~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~----------t~~~li~~~~~~g~~ 280 (857)
..++.|..+-.........+...|+-.|-...+++...++.+.+..- ||.. .|.-.++---+-|+-
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i----P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI----PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC----cchhhhhccCceEEEeeehhcccCCCccH
Confidence 34555655433322334456666777788888899999999998873 6432 233344444566888
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHH-------HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH--
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA-------VLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT-- 351 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-- 351 (857)
+.|+...-.|.+..++ +.||.....- +-+.|...+..+.|.+.|++.-+ +.|+..+
T Consensus 260 akAL~~~l~lve~eg~-------------vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGI 324 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGP-------------VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGI 324 (1226)
T ss_pred HHHHHHHHHHHHhcCC-------------CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccc
Confidence 9999988777765433 4555433211 11234455666777777777654 3454432
Q ss_pred -HHHHHHHHH---------HhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 352 -YGLAMESYR---------RCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 352 -~~~ll~~~~---------~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
+..+|.+-. ..+.-.|-...++.|.++.-...++-- + ...+-.-..++.+|...-+.
T Consensus 325 N~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~----------~---y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 325 NLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVA----------T---YFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred cHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHH----------H---hhhhhhhccCHHHHHHHHHH
Confidence 333333322 122233334445666666665555422 1 12233334556666655555
Q ss_pred HHh
Q 003016 422 IKS 424 (857)
Q Consensus 422 m~~ 424 (857)
|-+
T Consensus 392 mfK 394 (1226)
T KOG4279|consen 392 MFK 394 (1226)
T ss_pred Hhc
Confidence 543
No 351
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.16 E-value=5e+02 Score=25.86 Aligned_cols=73 Identities=14% Similarity=0.012 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH-HHHHcCC--HHHHH
Q 003016 530 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPHPLFFTEMLI-QAIVQSN--YEKAV 604 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~--gi~p~~~~~~~li~-~~~~~g~--~~~A~ 604 (857)
-++++++-+++.. ++.......+.|++++|..-++.+.+. .++--...|..+.. +++.++. +-+|.
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 3555566555543 444455567888888888888776543 11112233444444 4555543 45566
Q ss_pred HHHHHhh
Q 003016 605 ALINAMA 611 (857)
Q Consensus 605 ~l~~~M~ 611 (857)
-++.-..
T Consensus 90 ~l~~~l~ 96 (204)
T COG2178 90 LLYSILK 96 (204)
T ss_pred HHHHHHh
Confidence 5555543
No 352
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=28.81 E-value=1.6e+02 Score=32.75 Aligned_cols=26 Identities=27% Similarity=0.608 Sum_probs=23.0
Q ss_pred ChHHHHHHHhcCCCCChHHHHHhhHH
Q 003016 1 MEKIKQKLLKHGVFPTPKILRSIRKK 26 (857)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (857)
||-||.-...|||+|.|+.|.+..|-
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kd 258 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKE 258 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57899999999999999999887754
No 353
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=28.77 E-value=6.5e+02 Score=26.68 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
|.+++..+++.+++...-+-.+... .++|.+.-.. |-.|.+.+....+.++-..-.+.--.-+..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pE-------------klPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp 154 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPE-------------KLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLP 154 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcc-------------cCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCch
Confidence 6788999999998887666554431 1555554444 445889999999998888777643222333
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
.|.++.+ --|.+.+.-.|.+++|+++.
T Consensus 155 ~y~~vaE-------LyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 155 EYGTVAE-------LYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred hhHHHHH-------HHHHHHHhccccHHHHHHHH
Confidence 4644444 23455555679999998877
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=28.76 E-value=8.5e+02 Score=27.11 Aligned_cols=210 Identities=11% Similarity=-0.023 Sum_probs=101.8
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH--HHHHHHHHHHcC
Q 003016 370 AFWEEGKINEAVAAVRNMEQRGVVGTASV--YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI--TFTGLIISSMDG 445 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~~~~d~~t--~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~ll~a~~~~ 445 (857)
..++.|+.+-+..+++ .|..++... ..+.+...+..|+.+-+. .+.+ .|..|+.. ...+.+...+..
T Consensus 8 ~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~-~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 8 DAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMK-HGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHh-CCCCccccCCCcccHHHHHHHC
Confidence 3445677766655554 454443221 223345556777776443 3333 45555432 122345556678
Q ss_pred CCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH--hhhhHH
Q 003016 446 GHIDDCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT--YSSMLE 522 (857)
Q Consensus 446 g~~~~A~~if~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t--~~~ll~ 522 (857)
|+.+.+..+++.-... ...+.. ..+.+...+..|+.+ +++.+.+.| ..|+... -.+.+.
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~g-------------ad~~~~~~~g~tpLh 140 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKD-GMTPLHLATILKKLD----IMKLLIARG-------------ADPDIPNTDKFSPLH 140 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCC-------------CCCCCCCCCCCCHHH
Confidence 8888877777543220 000111 123344455667654 444455556 3333221 123444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMALSGCQLDQT---KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLF---FTEMLIQAIV 596 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~g~~pd~~---t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~---~~~li~~~~~ 596 (857)
..+..|+.+.+..+ .+.|..++.. -.+.| ...+..|..+ +.+.+.+.|..|+... ..+++...+.
T Consensus 141 ~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~TpL-~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~ 211 (413)
T PHA02875 141 LAVMMGDIKGIELL----IDHKACLDIEDCCGCTPL-IIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIE 211 (413)
T ss_pred HHHHcCCHHHHHHH----HhcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHH
Confidence 45566777655444 4445544422 22223 3334556644 4455556666654322 1244444456
Q ss_pred cCCHHHHHHHHHHhhhCCCccCH
Q 003016 597 QSNYEKAVALINAMAYAPFHITE 619 (857)
Q Consensus 597 ~g~~~~A~~l~~~M~~~~~~p~~ 619 (857)
.|+.+- ++.+...|..|+.
T Consensus 212 ~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 212 NNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred cCCHHH----HHHHHHCCcCcch
Confidence 676543 4444445666654
No 355
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.35 E-value=5.9e+02 Score=25.12 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=38.8
Q ss_pred CC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHH
Q 003016 464 PN-IGTVNAMLKVYSRND-----------MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWE 531 (857)
Q Consensus 464 p~-~~~~~~li~~~~~~g-----------~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~ 531 (857)
|+ ..++.++-.+|...+ .+++|.+.|++.... .|+..+|+.-+..+.
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---------------~P~ne~Y~ksLe~~~------ 124 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---------------DPNNELYRKSLEMAA------ 124 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----------------TT-HHHHHHHHHHH------
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHH------
Confidence 44 355555555554432 256677777777764 499999998888764
Q ss_pred HHHHHHHHHHHcCCC
Q 003016 532 YFEYVYKGMALSGCQ 546 (857)
Q Consensus 532 ~a~~l~~~m~~~g~~ 546 (857)
.|-+++.++.+.+..
T Consensus 125 kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 125 KAPELHMEIHKQGLG 139 (186)
T ss_dssp THHHHHHHHHHSSS-
T ss_pred hhHHHHHHHHHHHhh
Confidence 366777777776543
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=28.16 E-value=93 Score=22.74 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 366 VLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 366 ~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
-|..+|...|+.+.|..++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677888888888888888777544
No 357
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=27.74 E-value=59 Score=30.08 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH
Q 003016 327 SHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
.|.-..|..+|+.|++.|-.||..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPddW 131 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDDW 131 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCccH
Confidence 456677899999999999999984
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=27.64 E-value=93 Score=22.73 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=18.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777888888888887777554
No 359
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.39 E-value=2.8e+02 Score=27.38 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=37.2
Q ss_pred cCCCHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 444 DGGHIDDCISIFQHMKD--HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~--~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...+.+......+...+ +..|+..+|..++..+...|+.++|.++..++...-
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44444444444444444 356888888888888888888888888888887743
No 360
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=27.22 E-value=7.8e+02 Score=26.19 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
..+|.+.|++....+.. .. ...+...-..++....+.|+.+....+++.... ..+...-..++.+++.
T Consensus 146 ~~~a~~~~~~~~~~~~~--------~~-~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~ 213 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDS--------PE-SSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALAC 213 (324)
T ss_dssp HHHHHHHHHHHHHTTT---------TT-STS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcc--------cc-cccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhc
Confidence 45667777776654200 00 012333334455555555665555445444442 2355566667777776
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHHH
Q 003016 562 AGKCHLLEHAFDSLLEAG-EIPHPLFFTEMLIQAIVQSNY--EKAVALINA 609 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~g-i~p~~~~~~~li~~~~~~g~~--~~A~~l~~~ 609 (857)
..+.+...++++.....+ +.+.. . ..++.++...+.. +.+.+++..
T Consensus 214 ~~d~~~~~~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 214 SPDPELLKRLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp -S-HHHHHHHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 777777777777776643 44333 2 2233444433333 666666544
No 361
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.01 E-value=5.6e+02 Score=29.80 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHcC
Q 003016 483 SKAKELFEETTRAN 496 (857)
Q Consensus 483 ~~A~~lf~~M~~~g 496 (857)
+-|.++|..|.+.+
T Consensus 495 ~~aRRfFhhLLR~~ 508 (545)
T PF11768_consen 495 DLARRFFHHLLRYQ 508 (545)
T ss_pred HHHHHHHHHHHHhh
Confidence 44566666665543
No 362
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.55 E-value=3.8e+02 Score=31.71 Aligned_cols=77 Identities=12% Similarity=0.053 Sum_probs=49.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh------HHHHHHHHhHHcCCCCCCHHHHH
Q 003016 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH------EALRIFNLMLEDCNLYPDIAAYH 268 (857)
Q Consensus 195 ~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~------~A~~vf~~m~~~~gi~pd~~t~~ 268 (857)
+|+.+|...|++..+.++++..+.... +...=...||..|....+.|.++ .|.++++... +.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~-~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK-GDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc-CCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHHH
Confidence 788888888888888888887764322 22222456777788888888654 2344444333 335777887
Q ss_pred HHHHHHHh
Q 003016 269 SVAVTLGQ 276 (857)
Q Consensus 269 ~li~~~~~ 276 (857)
.|+.+-..
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 77766544
No 363
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.33 E-value=1.3e+02 Score=19.11 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 446 GHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 446 g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
|+.+.|..+|+.+...++-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677778888877765566777766554
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=26.03 E-value=4.6e+02 Score=23.16 Aligned_cols=79 Identities=22% Similarity=0.285 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003016 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284 (857)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~ 284 (857)
..++|..|-+++...+ .....+--.=++.+...|++++|..+.+.+. .||...|-+|-. .+.|..+++.
T Consensus 20 cHqEA~tIAdwL~~~~----~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce--~rlGl~s~l~ 88 (115)
T TIGR02508 20 CHQEANTIADWLHLKG----ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE--WRLGLGSALE 88 (115)
T ss_pred HHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH--HhhccHHHHH
Confidence 3466777777664321 0122333333445667899999998887774 389999877654 3667777777
Q ss_pred HHHHHHHcCC
Q 003016 285 KLIERMRQKP 294 (857)
Q Consensus 285 ~l~~~m~~~g 294 (857)
.-+.+|...|
T Consensus 89 ~rl~rla~sg 98 (115)
T TIGR02508 89 SRLNRLAASG 98 (115)
T ss_pred HHHHHHHhCC
Confidence 7777787776
No 365
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.90 E-value=6.8e+02 Score=25.05 Aligned_cols=87 Identities=9% Similarity=0.013 Sum_probs=44.8
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV-----AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
.+..+++++.|..-+...... |.-..+..+ .+...+.|.+++|+.+++.....+ .
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---------------w- 157 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---------------W- 157 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---------------H-
Confidence 455566666666666655432 322233322 344556666666666666554332 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 312 PDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
.......--+.+...|+-++|+.-|....+.+
T Consensus 158 -~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 158 -AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred -HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 11111222334666677777777776666654
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.10 E-value=1.4e+02 Score=23.52 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=29.2
Q ss_pred hhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 244 PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 244 ~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
++...++++.++.. ..|..-.-.+|.||.+.|++++|.+...++..
T Consensus 6 ~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555555442 24555566678888888888888888777654
No 367
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=25.03 E-value=1.1e+03 Score=27.23 Aligned_cols=164 Identities=12% Similarity=0.095 Sum_probs=119.3
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 395 TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 395 d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
|....-+++..+.++-++.-...+-.+|.. .| -+...|..++..|... .-+.-..+++++.+-+-.|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~-~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE-YG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH-hc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 444577888999999999999999889887 33 5667788899999888 6677788888887755566776777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC------HhHhhhhHHHHHhcCCHHHHHHHHHHHHHc-CCCC
Q 003016 475 VYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD------EYTYSSMLEASATAHQWEYFEYVYKGMALS-GCQL 547 (857)
Q Consensus 475 ~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd------~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-g~~p 547 (857)
-|-+ ++.+.+..+|.+....- .|. ...|.-+..- -..+.+..+++...+... |..-
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrf--------------I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~ 203 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRF--------------IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGR 203 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHh--------------cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccch
Confidence 7766 88889999998877643 221 1234444431 135677777777776643 5555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 003016 548 DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAG 579 (857)
Q Consensus 548 d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g 579 (857)
-.+.+--+-.-|+...++++|.+++..+.+..
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 56677777788999999999999999887763
No 368
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=24.39 E-value=22 Score=32.17 Aligned_cols=41 Identities=20% Similarity=0.155 Sum_probs=31.4
Q ss_pred ccccccccccCCCCCccccccccccc--------ccccccCChhhhHHHHHhhhh
Q 003016 755 FSKALSYIHSNDRPSNLCIDMEGLAD--------DWASSEHSDYLDKELAALYLS 801 (857)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 801 (857)
.....+|.++ ...+.+|++++++ +..+..|||+|-- ++||-
T Consensus 26 ~~~~~~~~~~---~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi---afgli 74 (116)
T PF14432_consen 26 KMKEEGYVPD---TKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI---AFGLI 74 (116)
T ss_pred HHHHcCCcch---hhhhCCCchhhhhhhcccccchhhhhccHHHHHH---Hhccc
Confidence 3355699999 8888888888766 5699999999865 55543
No 369
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.36 E-value=7.7e+02 Score=25.15 Aligned_cols=107 Identities=11% Similarity=0.059 Sum_probs=65.9
Q ss_pred HhhhhHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003016 516 TYSSMLEASATA--HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQ 593 (857)
Q Consensus 516 t~~~ll~a~~~~--g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~ 593 (857)
.|...+.|+... ++++.|.+.+.. -.+.|+. ..-++.++...|+.+.|..+++.+.-.. .+...-..++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 455667776665 667777766632 1222222 2347777888899999999998764321 223333333333
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc
Q 003016 594 AIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI 633 (857)
Q Consensus 594 ~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g 633 (857)
..++.+.||..+.+..... -....|..++..|-...
T Consensus 151 -La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHh
Confidence 7779999999998887431 12456777777666443
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=24.32 E-value=1.9e+02 Score=24.16 Aligned_cols=46 Identities=9% Similarity=0.059 Sum_probs=24.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHHcCCHHHHHHH
Q 003016 561 RAGKCHLLEHAFDSLLEAGEI-PH-PLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 561 ~~G~~~~A~~~~~~m~~~gi~-p~-~~~~~~li~~~~~~g~~~~A~~l 606 (857)
.....++|...|....+.-.. |+ -.+..+|+.+++..|++++++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666555554211 11 13555666666666666666655
No 371
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=24.01 E-value=5.1e+02 Score=22.92 Aligned_cols=53 Identities=15% Similarity=0.246 Sum_probs=38.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 439 IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 439 l~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+..+...|++++|..+.+.+ +.||...|-+|-. .+.|..+++..-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~---~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL---CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC---CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 44566788888888877666 4588888877654 46777777777777777665
No 372
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.95 E-value=1.4e+03 Score=27.93 Aligned_cols=163 Identities=11% Similarity=0.098 Sum_probs=93.4
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 162 VDRLSEREMTAKNWKFVRIMNQSGLMF---TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 162 ~~~l~~~~~~~~A~~l~~~M~~~g~~p---~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
++.+.+.+.+++|++..+.-. |..| ........|..+...|.++.|-.+.-.|... +..-|---+.-+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-------~~~eWe~~V~~f 433 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-------NAAEWELWVFKF 433 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-------hHHHHHHHHHHh
Confidence 466778888999998776543 4444 3345667788888889999988888777532 566677666666
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhh-----hhhcCCCCCCCC
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM-----HRKNWDPVLEPD 313 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m-----~~k~f~~~~~pd 313 (857)
+..++... ++.-++.. .-..+...|..+|..|.. .+.. .+++......+...... -..-+...-.++
T Consensus 434 ~e~~~l~~---Ia~~lPt~-~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~ 505 (846)
T KOG2066|consen 434 AELDQLTD---IAPYLPTG-PPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSEST 505 (846)
T ss_pred ccccccch---hhccCCCC-CcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccch
Confidence 66666543 34444441 112356677777777766 2222 22222222221111000 011122222232
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
.. --.|..-|...+++..|++++-.+.+
T Consensus 506 ~L-~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 AL-LEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hH-HHHHHHHHHHccChHHHHHHHHhccC
Confidence 22 22377778888999999888776653
No 373
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.33 E-value=3.4e+02 Score=32.01 Aligned_cols=49 Identities=14% Similarity=0.130 Sum_probs=28.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHcCCCHH
Q 003016 401 ELACCLCNNGRWQDAMLVVEKIKSL-RHSKPLEITFTGLIISSMDGGHID 449 (857)
Q Consensus 401 ~lI~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~a~~~~g~~~ 449 (857)
+|..+|..+|++-.+..+++..... .|-+.-...+|..|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 5677777777777777776665541 122222334566666666666543
No 374
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=22.93 E-value=8.9e+02 Score=25.35 Aligned_cols=91 Identities=14% Similarity=0.161 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-Ccc-----CHHHHHHH
Q 003016 552 HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAP-FHI-----TERQWTEL 625 (857)
Q Consensus 552 ~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~-~~p-----~~~~~~~L 625 (857)
|..++..|+|.=....=..+|+.. | .| ..|+..|.+.|+++.|-.++--+.... ... +...-..|
T Consensus 156 ~l~Ivv~C~RKtE~~~W~~LF~~l---g-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~L 226 (258)
T PF07064_consen 156 YLEIVVNCARKTEVRYWPYLFDYL---G-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRL 226 (258)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhc---C-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence 455555666655444444444433 3 33 367788899999999988876665333 222 33445567
Q ss_pred HHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 626 FESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 626 l~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
+......++++.+.++.+-+...+-.
T Consensus 227 L~~a~~~~~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 227 LVMALESGDWDLCFELVRFLKALDPE 252 (258)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 78888889999999999888866543
No 375
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.69 E-value=1e+03 Score=25.89 Aligned_cols=166 Identities=11% Similarity=0.021 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHH
Q 003016 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISI 454 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~i 454 (857)
++.+....++..+.+.+..| |...+ |..+.++--..++..|.+ + +...+++-.+.
T Consensus 36 ~~~~~~e~l~~~Ird~~Map----~Ye~l---ce~~~i~~D~~~l~~m~~----------------~--neeki~eld~~ 90 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAP----LYEYL---CESLVIKLDQDLLNSMKK----------------A--NEEKIKELDEK 90 (393)
T ss_pred cCHHHHHHHHHHHHhcccch----HHHHH---HhhcceeccHHHHHHHHH----------------h--hHHHHHHHHHH
Confidence 45666777888888888877 43332 333333333334444443 1 11122222222
Q ss_pred HHHHhhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH-HHhcCCHH
Q 003016 455 FQHMKDH--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA-SATAHQWE 531 (857)
Q Consensus 455 f~~m~~~--~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a-~~~~g~~~ 531 (857)
.+...+. -.--...+-....-||+.|+-+.|++.+.+..+.-. ..+.+.|++.+..-+.- |..+.-+.
T Consensus 91 iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktv---------s~g~kiDVvf~~iRlglfy~D~~lV~ 161 (393)
T KOG0687|consen 91 IEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTV---------SLGHKIDVVFYKIRLGLFYLDHDLVT 161 (393)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh---------hcccchhhHHHHHHHHHhhccHHHHH
Confidence 2233221 111234455666788999999999888876544320 11267777766554443 33334455
Q ss_pred HHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 532 YFEYVYKGMALSGCQLDQT----KHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 532 ~a~~l~~~m~~~g~~pd~~----t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
+-.+..+.+.+.|-.-+.. +|-.+-. ....++.+|-.+|-...
T Consensus 162 ~~iekak~liE~GgDWeRrNRlKvY~Gly~--msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 162 ESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HHHHhHHHHHHHHHHHc
Confidence 5566666677777655533 4544432 23456777777775443
No 376
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.65 E-value=3.1e+02 Score=25.85 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHH
Q 003016 336 VFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~ 397 (857)
+...+.+.|++++..- ..++....+.+..-.|..+++++.+.+...+..
T Consensus 8 ~~~~lk~~glr~T~qR-------------~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 8 AIERLKEAGLRLTPQR-------------LAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHHcCCCcCHHH-------------HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 4455666777666654 466677776766677777777777766544433
No 377
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.60 E-value=2e+02 Score=22.64 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 549 QTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 549 ~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
-.-.-.+|.+|...|++++|.++.+.+.
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344455666666666666666665554
No 378
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=22.34 E-value=9.8e+02 Score=25.63 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=103.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCC--C-CCCHHHHHHHHH
Q 003016 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCN--L-YPDIAAYHSVAV 272 (857)
Q Consensus 196 ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~g--i-~pd~~t~~~li~ 272 (857)
...++-+.|+|+.......... ...++...|.++... +.++.+++....+....... + .-...+|.....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~-----~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~ 76 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSN-----EDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYP 76 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhcc-----CCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4567888999999555554331 223466777777665 88999999888887776200 0 011233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHcC
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP-----SHQW---KGVFWVFKQLRKSG 344 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~-----~g~~---~~A~~l~~~m~~~g 344 (857)
...+...+.|..++.+-..... .+......++..... ..++ +..+.+-..+...-
T Consensus 77 ~l~~lq~L~Elee~~~~~~~~~-----------------~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~ 139 (352)
T PF02259_consen 77 SLVKLQQLVELEEIIELKSNLS-----------------QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLI 139 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHhhc-----------------ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcc
Confidence 4444444444444443332211 112222222222111 1111 11111111111100
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 345 LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG---TASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 345 ~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~---d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
..++.. ..+|..+...+-+.|+++.|...+..+...+... +..+.-.-...+-..|+..+|+..++.
T Consensus 140 ~~~~~~----------~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 140 LLPEEL----------AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred cchhHH----------HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 001111 2346888999999999999999999987744211 222344456667788999999998877
Q ss_pred HHh
Q 003016 422 IKS 424 (857)
Q Consensus 422 m~~ 424 (857)
...
T Consensus 210 ~~~ 212 (352)
T PF02259_consen 210 LLK 212 (352)
T ss_pred HHH
Confidence 665
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=22.28 E-value=1.4e+03 Score=27.30 Aligned_cols=299 Identities=13% Similarity=0.082 Sum_probs=147.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 161 LVDRLSEREMTAKNWKFVRIMNQS----GLMFTEGQMLKL-LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 161 l~~~l~~~~~~~~A~~l~~~M~~~----g~~p~~~t~~~l-l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
+.+.+.+.+... |....+...+. +..+-...|..+ +..+...++...|.+.++.+.........+-.+++-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 344454555544 88887776543 222333344444 323333479999999998887664433444556666665
Q ss_pred HHHH--HcCChhHHHHHHHHhHHcC-C-------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHcC---CChhh--
Q 003016 236 AILG--KAGRPHEALRIFNLMLEDC-N-------LYPDIAAYHSVAVTL--GQVGLLKELVKLIERMRQK---PSKRI-- 298 (857)
Q Consensus 236 ~~y~--k~g~~~~A~~vf~~m~~~~-g-------i~pd~~t~~~li~~~--~~~g~~~~A~~l~~~m~~~---g~~~l-- 298 (857)
.+.. +.+.++++.+..+++.... + -.|-..+|..++..+ ...|+++.+...+.++... .....
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w 264 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSW 264 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccC
Confidence 5544 4466778888887763310 1 124567788887754 4678877776665555432 10000
Q ss_pred --------hhhh-----------hhcCCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHH--------cCCCCCH
Q 003016 299 --------KNMH-----------RKNWDPVLEPDLVVYNAVLNAC--VPSHQWKGVFWVFKQLRK--------SGLKPSA 349 (857)
Q Consensus 299 --------~~m~-----------~k~f~~~~~pd~~t~~~li~~~--~~~g~~~~A~~l~~~m~~--------~g~~pd~ 349 (857)
+.+- .-+|......+.....-++++. +..+..+.|.+++.+..+ ....|..
T Consensus 265 ~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~ 344 (608)
T PF10345_consen 265 PSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSE 344 (608)
T ss_pred CCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 0000 1133333334444444444443 234444455555544422 1111111
Q ss_pred --HHHHHHHH---HHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CC-----CHHHHHHHHHH--HHHCCCHHHHH
Q 003016 350 --ATYGLAME---SYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VG-----TASVYYELACC--LCNNGRWQDAM 416 (857)
Q Consensus 350 --~t~~~ll~---~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~-----d~~t~~~lI~~--~~~~g~~~~A~ 416 (857)
.....-.. .+...+.--.+-..+-.+++..|...++.|.+..- .| ....+..++.| +-..|+.+.|.
T Consensus 345 sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~ 424 (608)
T PF10345_consen 345 SLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL 424 (608)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence 11111000 00001111222233445888899999998875421 11 11223333333 33468999999
Q ss_pred HHHH-------HHHhcCCCCCcHHHHHHH----HHHHHcCCCHHH--HHHHHHHHhh
Q 003016 417 LVVE-------KIKSLRHSKPLEITFTGL----IISSMDGGHIDD--CISIFQHMKD 460 (857)
Q Consensus 417 ~l~~-------~m~~~~g~~pd~~t~~~l----l~a~~~~g~~~~--A~~if~~m~~ 460 (857)
..|. ......+...+..++..+ |.-+-......+ +..+++.+..
T Consensus 425 ~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 425 YQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 9998 322214444444444321 111122222233 7778887765
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=21.99 E-value=1.7e+02 Score=17.50 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 468 TVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 468 ~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.|..+...|...|++++|...|....+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 566777788888999999998887765
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=21.67 E-value=2e+02 Score=24.05 Aligned_cols=46 Identities=9% Similarity=-0.032 Sum_probs=34.7
Q ss_pred HcCCHHHHHHHHHHhhhCCCc-cCH-HHHHHHHHHhhhccCHHHHHHH
Q 003016 596 VQSNYEKAVALINAMAYAPFH-ITE-RQWTELFESNEDRISRDKLEKL 641 (857)
Q Consensus 596 ~~g~~~~A~~l~~~M~~~~~~-p~~-~~~~~Ll~a~~~~g~~e~~~~l 641 (857)
...+.+.|+..++.....-.. |+. .++..|+.|+..+|..+.+.+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999986654333 333 5889999999999998776554
No 382
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=21.40 E-value=7.6e+02 Score=25.25 Aligned_cols=99 Identities=12% Similarity=0.065 Sum_probs=64.6
Q ss_pred CCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 003016 510 LKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQL---DQTK--HAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHP 584 (857)
Q Consensus 510 ~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~p---d~~t--~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~ 584 (857)
+.++..-+|.|+--|..+..+.+|-..|.. ..|+.| |..+ -..-|......|++++|++..+.+.-.=+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 556666777888777777777777666653 446665 2333 334566678999999999998876543233343
Q ss_pred HHHHHH----HHHHHHcCCHHHHHHHHHHh
Q 003016 585 LFFTEM----LIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 585 ~~~~~l----i~~~~~~g~~~~A~~l~~~M 610 (857)
..+--| +.-..|.|..++|+++++.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 222222 33456789999999998873
No 383
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=21.20 E-value=8.4e+02 Score=26.33 Aligned_cols=109 Identities=17% Similarity=0.177 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003016 326 PSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 405 (857)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~ 405 (857)
..--+.+|..+|++..+.| ..+|+. +.-+..+ -...+.+.+++...-.+.-.-+..+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr~----------sqq~qh~---------~~~~da~~rRDtnvl~YIKRRLAMC 284 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYRQ----------SQQCQHQ---------SPQHEAQLRRDTNVLVYIKRRLAMC 284 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHhh----------HHHHhhh---------ccchhhhhhcccchhhHHHHHHHHH
Confidence 3445677888888887654 223310 1111122 1223445555543333333345555
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPLEI---TFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
--+.|+..+|.+.|+++.+. .|-.. .-..||.+|.....+.++..++.+-.+
T Consensus 285 ARklGrlrEA~K~~RDL~ke---~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKE---FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66789999999999987762 23222 234677788777777777777666555
No 384
>PF13934 ELYS: Nuclear pore complex assembly
Probab=21.17 E-value=8.9e+02 Score=24.70 Aligned_cols=105 Identities=12% Similarity=0.183 Sum_probs=64.2
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 365 KVLVRAFWEE--GKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 365 ~~Li~~y~k~--g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
..++.+|+-. +++++|...+ ....+.|+-. .-++.++...|+...|+.+++.+.. .. .+......++..
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p-~l--~s~~~~~~~~~~- 150 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELL---SHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGP-PL--SSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHh---CCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC-CC--CCHHHHHHHHHH-
Confidence 4566666644 5666776666 3334444322 2478888889999999999887643 22 222233333444
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g 480 (857)
..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 151 La~~~v~EAf~~~R~~~~~~--~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL--RRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh--hHHHHHHHHHHHHHHh
Confidence 55689999988877765521 1346666666666433
No 385
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=21.15 E-value=1.9e+02 Score=25.77 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWR 207 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~ 207 (857)
..+++.+...+..-.|-++++.+.+.+..++..|.-..|..+...|-+.
T Consensus 4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 3567777777777789999999999988889999999999999888654
No 386
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=21.03 E-value=5.2e+02 Score=21.99 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=11.7
Q ss_pred HHHHHcCChhHHHHHHHHhHH
Q 003016 236 AILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~ 256 (857)
..+...|++++|...+++...
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344555666666666655443
No 387
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.86 E-value=8.5e+02 Score=24.37 Aligned_cols=131 Identities=12% Similarity=0.049 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQML--KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~--~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~ 233 (857)
..|..++........ +.......+....-.-...++. .+.+.+...++++.|..-+.+......+.. ....+--.
T Consensus 55 ~~Y~~~i~~~~ak~~--~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~-lk~l~~lR 131 (207)
T COG2976 55 AQYQNAIKAVQAKKP--KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDEN-LKALAALR 131 (207)
T ss_pred HHHHHHHHHHhcCCc--hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHH-HHHHHHHH
Confidence 345666666653333 5556666666554222222333 345668889999999999998864311100 01122233
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA--YHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t--~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
|.......|.++.|+.+++.... ++-.+ ...--..+...|+-++|..-|......+
T Consensus 132 LArvq~q~~k~D~AL~~L~t~~~-----~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 132 LARVQLQQKKADAALKTLDTIKE-----ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHhhhHHHHHHHHhcccc-----ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 55667788999999999988876 22222 2222357899999999999999988763
No 388
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.72 E-value=8.5e+02 Score=24.31 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS-------LRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~-------~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
+.|.+++...++.++..+.+..-...-+..+-.|+. ..+-.-|......=+..|-..|++..--.+|-....+
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCCHHHH-----------------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 462 CEPNIGTV-----------------------------------------------NAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 462 ~~p~~~~~-----------------------------------------------~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+..-...- -+++-.|-+.-+|.++.++++.|.+
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~e 160 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHE 160 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCccccCC--CCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 495 ANSSGYTFLSG--DGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 495 ~g~~~~~~~~~--~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
.. .-++.+.+ +.....+.-..-|....-|.+.|.++.|..++++
T Consensus 161 l~-i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 161 LQ-IHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred Hh-hhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 389
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=20.60 E-value=2.6e+02 Score=24.84 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 587 FTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
|..|+.-|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 88999999999999999999999865
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=20.49 E-value=5.5e+02 Score=21.99 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 003016 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALR 249 (857)
Q Consensus 173 ~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~ 249 (857)
.+-+++..+.+.|+ .+......+-.+-...|+.+.|++++..+. .++ -.|..+++++-..|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~-------~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE-------GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC-------cHHHHHHHHHHHcCchhhhhc
Confidence 34567777777774 456666666665567789999999999885 332 268889999988888766643
Done!