Query 003016
Match_columns 857
No_of_seqs 837 out of 3797
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 10:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-34 5E-39 341.9 44.2 464 153-658 82-587 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.4E-31 4.7E-36 316.4 42.6 457 187-678 81-571 (597)
3 4g26_A Pentatricopeptide repea 100.0 3E-28 1E-32 279.8 25.2 207 331-562 7-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.4E-28 1.5E-32 278.4 25.3 206 378-597 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.8E-21 6.1E-26 216.9 46.8 373 197-626 6-380 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-20 4.7E-25 209.6 46.8 379 163-598 7-387 (388)
7 2gw1_A Mitochondrial precursor 99.8 5.8E-18 2E-22 195.0 39.8 425 156-612 7-477 (514)
8 2y4t_A DNAJ homolog subfamily 99.8 9.4E-18 3.2E-22 190.2 40.7 325 226-591 24-370 (450)
9 2y4t_A DNAJ homolog subfamily 99.8 2.3E-17 7.7E-22 187.0 40.1 313 188-556 24-370 (450)
10 2gw1_A Mitochondrial precursor 99.8 7.8E-17 2.7E-21 185.5 41.7 426 190-660 6-488 (514)
11 3fp2_A TPR repeat-containing p 99.8 4.2E-16 1.4E-20 180.7 40.2 419 156-612 26-490 (537)
12 3fp2_A TPR repeat-containing p 99.8 1.2E-15 4.1E-20 176.9 40.4 416 190-651 25-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.7 8.8E-14 3E-18 151.4 42.6 324 229-593 4-349 (359)
14 3ieg_A DNAJ homolog subfamily 99.7 1.4E-13 4.7E-18 149.9 41.3 305 154-496 2-336 (359)
15 2ooe_A Cleavage stimulation fa 99.7 7.9E-13 2.7E-17 153.6 46.5 413 188-648 11-492 (530)
16 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-17 8.3E-22 194.0 7.3 164 311-491 124-306 (1134)
17 3spa_A Mtrpol, DNA-directed RN 99.7 3.3E-17 1.1E-21 192.9 7.2 150 264-446 127-286 (1134)
18 1fch_A Peroxisomal targeting s 99.7 9.3E-15 3.2E-19 160.5 25.3 311 202-538 37-354 (368)
19 3hym_B Cell division cycle pro 99.6 1.3E-13 4.5E-18 148.3 31.5 294 187-531 19-322 (330)
20 2xm6_A Protein corresponding t 99.6 7.1E-11 2.4E-15 135.6 55.2 364 175-615 27-434 (490)
21 2ooe_A Cleavage stimulation fa 99.6 1.1E-11 3.9E-16 143.9 48.0 415 152-612 10-491 (530)
22 1b89_A Protein (clathrin heavy 99.6 1.1E-15 3.7E-20 168.1 11.7 349 202-651 15-372 (449)
23 4eqf_A PEX5-related protein; a 99.6 4.2E-14 1.4E-18 155.6 24.0 287 227-538 64-351 (365)
24 3hym_B Cell division cycle pro 99.6 3.2E-13 1.1E-17 145.3 30.5 290 155-482 22-321 (330)
25 1fch_A Peroxisomal targeting s 99.6 9.1E-14 3.1E-18 152.5 26.2 302 241-609 38-355 (368)
26 1b89_A Protein (clathrin heavy 99.6 5.6E-14 1.9E-18 154.5 21.8 354 157-610 8-369 (449)
27 2xm6_A Protein corresponding t 99.6 1.6E-10 5.6E-15 132.6 52.0 354 227-651 38-435 (490)
28 4eqf_A PEX5-related protein; a 99.6 2.2E-13 7.6E-18 149.7 25.4 202 263-494 64-275 (365)
29 3mkr_A Coatomer subunit epsilo 99.5 1.6E-12 5.4E-17 138.7 28.0 253 238-549 9-268 (291)
30 3cv0_A Peroxisome targeting si 99.5 1.5E-12 5.2E-17 139.8 28.0 272 230-539 23-311 (327)
31 3cv0_A Peroxisome targeting si 99.5 2.4E-12 8.2E-17 138.2 27.8 277 192-493 23-313 (327)
32 1xi4_A Clathrin heavy chain; a 99.5 2.1E-10 7.2E-15 139.6 45.5 265 313-640 1104-1376(1630)
33 1xi4_A Clathrin heavy chain; a 99.5 2.5E-09 8.7E-14 130.3 51.9 389 188-678 983-1376(1630)
34 3mkr_A Coatomer subunit epsilo 99.5 1.3E-11 4.3E-16 131.7 26.0 251 199-496 8-265 (291)
35 4g1t_A Interferon-induced prot 99.4 2E-10 6.9E-15 130.6 34.0 374 188-622 49-469 (472)
36 3uq3_A Heat shock protein STI1 99.3 1.4E-10 4.8E-15 119.6 23.7 228 228-495 5-236 (258)
37 3uq3_A Heat shock protein STI1 99.3 3.2E-10 1.1E-14 116.9 26.3 228 264-542 5-235 (258)
38 4g1t_A Interferon-induced prot 99.3 2.2E-09 7.5E-14 122.0 35.7 374 227-651 50-462 (472)
39 2ho1_A Type 4 fimbrial biogene 99.3 8.9E-10 3E-14 113.6 28.5 201 228-460 37-237 (252)
40 2ho1_A Type 4 fimbrial biogene 99.3 6.4E-10 2.2E-14 114.7 26.9 202 264-496 37-239 (252)
41 2vq2_A PILW, putative fimbrial 99.3 7.8E-10 2.7E-14 111.3 26.2 203 263-496 7-212 (225)
42 2vq2_A PILW, putative fimbrial 99.3 1.2E-09 4.1E-14 109.9 27.4 203 227-460 7-210 (225)
43 4e6h_A MRNA 3'-END-processing 99.3 9E-08 3.1E-12 112.9 44.8 454 174-659 51-579 (679)
44 2pl2_A Hypothetical conserved 99.2 7.5E-10 2.6E-14 112.2 22.1 198 394-611 3-212 (217)
45 2pl2_A Hypothetical conserved 99.2 7.6E-10 2.6E-14 112.2 21.9 200 187-423 2-212 (217)
46 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.5E-10 1.2E-14 118.1 19.7 222 373-613 17-244 (275)
47 1xnf_A Lipoprotein NLPI; TPR, 99.2 4.4E-10 1.5E-14 117.3 20.2 221 229-489 44-269 (275)
48 1ouv_A Conserved hypothetical 99.2 2.7E-08 9.1E-13 104.2 32.9 224 227-496 5-252 (273)
49 1ouv_A Conserved hypothetical 99.2 2.8E-08 9.5E-13 104.0 31.8 223 263-543 5-251 (273)
50 2q7f_A YRRB protein; TPR, prot 99.2 1.6E-09 5.5E-14 110.7 21.8 202 263-496 22-223 (243)
51 2q7f_A YRRB protein; TPR, prot 99.2 1.5E-09 5E-14 110.9 21.0 198 229-460 24-221 (243)
52 3u4t_A TPR repeat-containing p 99.2 3.8E-09 1.3E-13 110.2 23.9 244 193-471 6-260 (272)
53 3sf4_A G-protein-signaling mod 99.2 1.7E-09 5.9E-14 119.6 22.3 286 226-542 7-335 (406)
54 3u4t_A TPR repeat-containing p 99.1 6.5E-09 2.2E-13 108.3 24.9 160 319-494 8-170 (272)
55 3sf4_A G-protein-signaling mod 99.1 2.3E-09 7.8E-14 118.6 22.5 282 261-575 6-333 (406)
56 4a1s_A PINS, partner of inscut 99.1 2.7E-09 9.2E-14 118.7 23.0 284 229-542 49-371 (411)
57 4a1s_A PINS, partner of inscut 99.1 1.5E-09 5.2E-14 120.8 20.4 246 264-541 48-330 (411)
58 3ro2_A PINS homolog, G-protein 99.1 2E-09 6.8E-14 115.1 20.3 245 264-541 5-290 (338)
59 3ro2_A PINS homolog, G-protein 99.1 3.1E-09 1.1E-13 113.6 21.2 280 315-612 6-331 (338)
60 2h6f_A Protein farnesyltransfe 99.1 1.5E-08 5E-13 112.0 26.4 232 192-496 99-349 (382)
61 4e6h_A MRNA 3'-END-processing 99.1 1E-06 3.5E-11 104.0 42.5 433 151-630 62-585 (679)
62 2h6f_A Protein farnesyltransfe 99.1 1.2E-08 4E-13 112.7 24.4 231 154-422 96-344 (382)
63 3e4b_A ALGK; tetratricopeptide 99.1 9.5E-09 3.2E-13 116.6 24.1 343 196-615 9-389 (452)
64 2ond_A Cleavage stimulation fa 99.1 6.1E-08 2.1E-12 103.7 29.0 220 245-496 33-271 (308)
65 2ond_A Cleavage stimulation fa 99.1 1E-07 3.4E-12 102.0 29.7 221 281-543 33-270 (308)
66 3e4b_A ALGK; tetratricopeptide 99.0 1.1E-08 3.7E-13 116.1 22.7 350 234-651 9-390 (452)
67 3nf1_A KLC 1, kinesin light ch 99.0 1.7E-09 5.9E-14 114.8 14.9 247 263-542 26-306 (311)
68 3nf1_A KLC 1, kinesin light ch 99.0 1.6E-08 5.4E-13 107.2 19.8 240 364-611 30-305 (311)
69 3vtx_A MAMA; tetratricopeptide 99.0 8.9E-08 3.1E-12 93.5 22.8 161 364-542 8-169 (184)
70 3ulq_A Response regulator aspa 98.9 6.1E-08 2.1E-12 107.0 22.8 304 201-542 23-367 (383)
71 3ulq_A Response regulator aspa 98.9 1.1E-07 3.7E-12 105.0 24.0 303 238-576 22-366 (383)
72 3vtx_A MAMA; tetratricopeptide 98.9 1.4E-07 4.9E-12 92.0 22.2 168 313-496 4-171 (184)
73 4abn_A Tetratricopeptide repea 98.9 5.7E-08 2E-12 110.8 20.4 210 206-453 84-313 (474)
74 4abn_A Tetratricopeptide repea 98.9 5.7E-08 2E-12 110.8 19.9 213 243-491 83-317 (474)
75 1hz4_A MALT regulatory protein 98.8 1.9E-06 6.5E-11 94.4 29.6 277 268-577 18-321 (373)
76 3as5_A MAMA; tetratricopeptide 98.8 3.1E-07 1.1E-11 88.6 20.7 59 551-610 112-170 (186)
77 3as5_A MAMA; tetratricopeptide 98.8 3.6E-07 1.2E-11 88.2 20.9 162 364-542 11-172 (186)
78 1hz4_A MALT regulatory protein 98.8 2.9E-06 9.8E-11 92.9 30.0 272 365-647 18-321 (373)
79 3q15_A PSP28, response regulat 98.8 1.2E-06 4E-11 96.5 26.9 317 186-542 6-364 (378)
80 3q15_A PSP28, response regulat 98.8 1.1E-06 3.8E-11 96.7 25.8 316 225-576 7-363 (378)
81 3edt_B KLC 2, kinesin light ch 98.7 2.3E-07 7.9E-12 96.4 18.2 211 394-612 41-280 (283)
82 3edt_B KLC 2, kinesin light ch 98.7 3E-07 1E-11 95.6 17.2 173 311-494 40-280 (283)
83 4i17_A Hypothetical protein; T 98.6 2.9E-06 9.9E-11 85.8 21.9 173 311-496 4-210 (228)
84 2fo7_A Synthetic consensus TPR 98.6 1.5E-06 5.1E-11 78.7 17.8 131 363-496 3-133 (136)
85 4i17_A Hypothetical protein; T 98.6 5.4E-06 1.8E-10 83.8 22.5 189 365-578 11-209 (228)
86 4gyw_A UDP-N-acetylglucosamine 98.6 1.2E-06 4E-11 104.6 20.0 165 227-424 8-173 (723)
87 2fo7_A Synthetic consensus TPR 98.6 3.2E-06 1.1E-10 76.5 17.6 130 192-343 3-132 (136)
88 4gyw_A UDP-N-acetylglucosamine 98.6 2.2E-06 7.5E-11 102.2 21.0 161 364-542 12-173 (723)
89 2uy1_A Cleavage stimulation fa 98.5 8.7E-05 3E-09 84.6 31.6 123 516-646 288-411 (493)
90 1qqe_A Vesicular transport pro 98.5 8.2E-06 2.8E-10 86.3 20.3 215 205-460 32-268 (292)
91 1qqe_A Vesicular transport pro 98.4 7.2E-06 2.5E-10 86.8 19.0 210 197-423 44-267 (292)
92 3mv2_B Coatomer subunit epsilo 98.4 9.7E-05 3.3E-09 77.8 25.5 179 380-578 85-282 (310)
93 3mv2_B Coatomer subunit epsilo 98.3 0.00013 4.3E-09 76.9 25.0 252 370-660 22-292 (310)
94 2uy1_A Cleavage stimulation fa 98.3 0.0014 4.9E-08 74.5 35.3 354 204-611 28-411 (493)
95 3urz_A Uncharacterized protein 98.2 4.7E-05 1.6E-09 75.9 18.9 89 403-494 11-116 (208)
96 3qky_A Outer membrane assembly 98.2 5.2E-05 1.8E-09 78.3 19.9 178 188-392 13-226 (261)
97 3qky_A Outer membrane assembly 98.2 8.1E-05 2.8E-09 76.8 21.3 102 226-344 13-127 (261)
98 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00013 4.6E-09 73.5 21.0 105 365-469 8-133 (225)
99 3urz_A Uncharacterized protein 98.2 8.1E-05 2.8E-09 74.2 18.6 165 437-624 9-195 (208)
100 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00019 6.5E-09 72.4 20.7 171 314-496 4-214 (225)
101 3dra_A Protein farnesyltransfe 98.1 0.0012 4.2E-08 69.8 27.2 224 164-424 42-286 (306)
102 3qou_A Protein YBBN; thioredox 98.1 4.8E-05 1.6E-09 80.2 16.2 165 188-387 115-281 (287)
103 3u3w_A Transcriptional activat 98.1 0.00023 7.8E-09 75.0 21.1 213 178-424 34-265 (293)
104 2pzi_A Probable serine/threoni 98.1 5.5E-05 1.9E-09 90.2 17.3 183 407-610 402-602 (681)
105 2ifu_A Gamma-SNAP; membrane fu 98.0 0.00016 5.6E-09 76.8 19.3 127 467-605 117-253 (307)
106 3rjv_A Putative SEL1 repeat pr 98.0 0.00044 1.5E-08 69.0 21.4 177 173-392 4-199 (212)
107 3dra_A Protein farnesyltransfe 98.0 0.0015 5.1E-08 69.1 26.4 219 327-576 46-285 (306)
108 2r5s_A Uncharacterized protein 98.0 4.9E-05 1.7E-09 73.4 13.8 158 365-541 10-171 (176)
109 3u3w_A Transcriptional activat 98.0 0.00094 3.2E-08 70.2 24.7 168 401-576 80-264 (293)
110 3qou_A Protein YBBN; thioredox 98.0 7.4E-05 2.5E-09 78.7 15.9 164 431-610 116-281 (287)
111 2r5s_A Uncharacterized protein 98.0 5E-05 1.7E-09 73.3 13.4 156 437-610 11-170 (176)
112 2pzi_A Probable serine/threoni 98.0 0.00011 3.6E-09 87.7 18.5 178 201-411 402-583 (681)
113 2vsy_A XCC0866; transferase, g 98.0 0.00012 4E-09 85.3 18.5 153 374-544 2-158 (568)
114 2ifu_A Gamma-SNAP; membrane fu 98.0 0.00024 8.3E-09 75.4 19.5 177 193-388 39-222 (307)
115 2vsy_A XCC0866; transferase, g 98.0 0.00012 4.1E-09 85.1 18.4 155 168-345 2-159 (568)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.00021 7.2E-09 70.8 17.6 126 365-496 10-151 (213)
117 3rjv_A Putative SEL1 repeat pr 98.0 0.00049 1.7E-08 68.7 20.3 174 208-424 4-196 (212)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.0 0.00021 7.2E-09 70.8 17.5 133 229-393 7-153 (213)
119 2qfc_A PLCR protein; TPR, HTH, 97.9 0.0007 2.4E-08 71.2 21.6 166 399-576 78-264 (293)
120 1na0_A Designed protein CTPR3; 97.9 0.00033 1.1E-08 61.9 15.7 99 396-496 9-107 (125)
121 2qfc_A PLCR protein; TPR, HTH, 97.9 0.00068 2.3E-08 71.3 20.4 174 158-341 78-264 (293)
122 1na0_A Designed protein CTPR3; 97.9 0.00038 1.3E-08 61.5 15.5 98 190-293 9-106 (125)
123 1a17_A Serine/threonine protei 97.8 0.00051 1.7E-08 64.6 16.6 128 364-494 16-145 (166)
124 1a17_A Serine/threonine protei 97.8 0.00047 1.6E-08 64.8 16.0 128 397-541 14-144 (166)
125 4ga2_A E3 SUMO-protein ligase 97.8 7.5E-05 2.6E-09 70.2 9.7 58 437-494 36-93 (150)
126 3q7a_A Farnesyltransferase alp 97.8 0.011 3.8E-07 63.3 27.6 230 159-424 57-330 (349)
127 3gw4_A Uncharacterized protein 97.8 0.00038 1.3E-08 68.1 15.2 159 444-611 4-174 (203)
128 4ga2_A E3 SUMO-protein ligase 97.8 7.3E-05 2.5E-09 70.3 9.5 127 367-496 3-130 (150)
129 4f3v_A ESX-1 secretion system 97.8 0.00084 2.9E-08 69.7 17.7 199 273-496 16-238 (282)
130 3gw4_A Uncharacterized protein 97.8 0.00032 1.1E-08 68.6 14.2 136 433-577 27-175 (203)
131 2lni_A Stress-induced-phosphop 97.7 0.00078 2.7E-08 60.5 15.3 101 394-496 14-114 (133)
132 2vyi_A SGTA protein; chaperone 97.7 0.00053 1.8E-08 61.1 14.0 99 396-496 12-110 (131)
133 2vyi_A SGTA protein; chaperone 97.7 0.00069 2.3E-08 60.4 14.7 120 189-330 11-130 (131)
134 2c2l_A CHIP, carboxy terminus 97.7 0.00053 1.8E-08 71.8 15.6 191 396-611 4-197 (281)
135 3q7a_A Farnesyltransferase alp 97.6 0.016 5.4E-07 62.1 26.2 226 370-613 63-331 (349)
136 2e2e_A Formate-dependent nitri 97.6 0.00037 1.3E-08 66.9 12.4 122 372-496 21-145 (177)
137 2lni_A Stress-induced-phosphop 97.6 0.00067 2.3E-08 60.9 13.3 100 188-293 14-113 (133)
138 1p5q_A FKBP52, FK506-binding p 97.6 0.001 3.5E-08 71.7 16.5 129 364-494 150-293 (336)
139 4gco_A Protein STI-1; structur 97.6 0.0016 5.3E-08 59.0 15.0 97 398-496 15-111 (126)
140 3gyz_A Chaperone protein IPGC; 97.6 0.0013 4.4E-08 61.8 14.8 94 434-542 38-132 (151)
141 3gyz_A Chaperone protein IPGC; 97.5 0.00092 3.1E-08 62.8 12.7 99 396-496 36-134 (151)
142 2vgx_A Chaperone SYCD; alterna 97.5 0.0006 2E-08 63.8 11.1 99 396-496 21-119 (148)
143 1p5q_A FKBP52, FK506-binding p 97.5 0.0023 7.7E-08 68.9 17.0 131 396-541 147-292 (336)
144 2e2e_A Formate-dependent nitri 97.5 0.00077 2.6E-08 64.6 12.0 122 166-294 21-145 (177)
145 4gco_A Protein STI-1; structur 97.5 0.0027 9.1E-08 57.4 14.9 107 364-473 16-122 (126)
146 2vgx_A Chaperone SYCD; alterna 97.5 0.00082 2.8E-08 62.8 11.7 96 466-577 21-117 (148)
147 3upv_A Heat shock protein STI1 97.4 0.003 1E-07 56.6 14.9 95 398-494 6-100 (126)
148 1elw_A TPR1-domain of HOP; HOP 97.4 0.0033 1.1E-07 54.6 14.7 98 397-496 5-102 (118)
149 1elw_A TPR1-domain of HOP; HOP 97.4 0.0046 1.6E-07 53.7 15.6 98 190-293 4-101 (118)
150 4f3v_A ESX-1 secretion system 97.4 0.00037 1.3E-08 72.4 9.4 128 467-612 103-236 (282)
151 2kck_A TPR repeat; tetratricop 97.4 0.0013 4.4E-08 56.8 11.8 99 228-344 6-107 (112)
152 4b4t_Q 26S proteasome regulato 97.4 0.05 1.7E-06 59.9 27.5 268 368-645 11-321 (434)
153 4b4t_Q 26S proteasome regulato 97.4 0.0079 2.7E-07 66.5 20.8 215 271-494 11-244 (434)
154 1elr_A TPR2A-domain of HOP; HO 97.4 0.0014 4.9E-08 58.3 12.0 110 433-555 5-118 (131)
155 2c2l_A CHIP, carboxy terminus 97.4 0.003 1E-07 65.9 16.1 192 263-495 3-199 (281)
156 1elr_A TPR2A-domain of HOP; HO 97.4 0.0022 7.5E-08 57.0 13.0 97 398-496 6-109 (131)
157 2kck_A TPR repeat; tetratricop 97.3 0.00081 2.8E-08 58.1 9.6 97 398-496 8-107 (112)
158 3q49_B STIP1 homology and U bo 97.3 0.003 1E-07 57.2 13.7 100 226-343 7-106 (137)
159 2xcb_A PCRH, regulatory protei 97.3 0.0023 7.9E-08 58.9 13.0 98 397-496 19-116 (142)
160 3upv_A Heat shock protein STI1 97.3 0.0047 1.6E-07 55.2 14.4 97 191-293 5-101 (126)
161 3q49_B STIP1 homology and U bo 97.3 0.0044 1.5E-07 56.0 14.1 101 394-496 7-107 (137)
162 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0032 1.1E-07 61.6 14.0 131 364-496 41-187 (198)
163 4gcn_A Protein STI-1; structur 97.3 0.0031 1.1E-07 57.0 12.7 102 433-551 9-118 (127)
164 2dba_A Smooth muscle cell asso 97.2 0.0073 2.5E-07 55.1 15.5 100 394-496 26-129 (148)
165 2fbn_A 70 kDa peptidylprolyl i 97.2 0.0035 1.2E-07 61.3 13.9 127 367-494 10-150 (198)
166 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0036 1.2E-07 59.1 13.3 99 396-496 11-109 (164)
167 3ro3_A PINS homolog, G-protein 97.2 0.002 6.9E-08 59.6 11.3 132 363-494 11-157 (164)
168 3dss_A Geranylgeranyl transfer 97.2 0.056 1.9E-06 57.4 23.3 172 325-527 40-240 (331)
169 3sz7_A HSC70 cochaperone (SGT) 97.2 0.0084 2.9E-07 56.5 15.2 98 465-578 10-108 (164)
170 2xcb_A PCRH, regulatory protei 97.1 0.0056 1.9E-07 56.3 13.4 95 433-542 19-114 (142)
171 3ro3_A PINS homolog, G-protein 97.1 0.0036 1.2E-07 57.8 12.2 133 467-611 10-156 (164)
172 2dba_A Smooth muscle cell asso 97.1 0.012 4.2E-07 53.5 15.1 96 190-292 28-127 (148)
173 4gcn_A Protein STI-1; structur 97.1 0.013 4.5E-07 52.8 14.7 96 399-496 11-113 (127)
174 3dss_A Geranylgeranyl transfer 97.0 0.21 7.1E-06 53.0 25.9 161 159-343 34-222 (331)
175 2xev_A YBGF; tetratricopeptide 97.0 0.014 4.8E-07 51.9 14.2 95 402-496 8-106 (129)
176 3n71_A Histone lysine methyltr 96.9 0.0075 2.6E-07 68.2 14.6 137 199-343 318-464 (490)
177 1hxi_A PEX5, peroxisome target 96.9 0.0056 1.9E-07 54.7 11.1 96 399-496 20-115 (121)
178 1hxi_A PEX5, peroxisome target 96.9 0.0075 2.6E-07 53.9 11.4 95 193-293 20-114 (121)
179 3rkv_A Putative peptidylprolyl 96.8 0.015 5.3E-07 54.5 13.2 98 399-496 14-127 (162)
180 2xev_A YBGF; tetratricopeptide 96.8 0.038 1.3E-06 49.0 15.1 104 365-468 6-112 (129)
181 1kt0_A FKBP51, 51 kDa FK506-bi 96.8 0.014 4.7E-07 65.6 14.8 96 399-494 271-379 (457)
182 3n71_A Histone lysine methyltr 96.7 0.0085 2.9E-07 67.7 12.7 136 273-424 318-463 (490)
183 3k9i_A BH0479 protein; putativ 96.7 0.0032 1.1E-07 55.7 7.5 87 409-496 3-91 (117)
184 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.015 5.2E-07 65.3 14.6 128 364-493 271-413 (457)
185 1wao_1 Serine/threonine protei 96.6 0.0047 1.6E-07 69.9 9.4 118 199-338 15-134 (477)
186 3k9i_A BH0479 protein; putativ 96.4 0.0046 1.6E-07 54.7 6.6 85 168-256 3-89 (117)
187 1ihg_A Cyclophilin 40; ppiase 96.4 0.026 8.9E-07 61.4 13.6 121 365-487 227-362 (370)
188 1wao_1 Serine/threonine protei 96.4 0.029 9.9E-07 63.4 14.5 118 165-289 16-135 (477)
189 3rkv_A Putative peptidylprolyl 96.4 0.032 1.1E-06 52.2 12.6 100 192-293 13-126 (162)
190 1ihg_A Cyclophilin 40; ppiase 96.3 0.029 9.7E-07 61.1 13.5 126 192-335 225-362 (370)
191 2if4_A ATFKBP42; FKBP-like, al 96.1 0.016 5.3E-07 62.3 9.7 112 363-494 181-292 (338)
192 2hr2_A Hypothetical protein; a 96.1 0.065 2.2E-06 50.2 12.6 94 467-575 12-128 (159)
193 2if4_A ATFKBP42; FKBP-like, al 96.0 0.015 5E-07 62.5 9.1 97 398-496 232-329 (338)
194 2hr2_A Hypothetical protein; a 95.9 0.1 3.4E-06 48.9 13.0 100 264-389 11-130 (159)
195 1dce_A Protein (RAB geranylger 95.6 0.37 1.3E-05 55.4 19.3 161 164-350 38-226 (567)
196 2l6j_A TPR repeat-containing p 95.6 0.042 1.4E-06 47.1 8.6 65 227-293 3-67 (111)
197 3mkq_A Coatomer beta'-subunit; 95.6 0.25 8.4E-06 59.4 18.4 98 372-493 610-708 (814)
198 1dce_A Protein (RAB geranylger 95.6 0.51 1.7E-05 54.3 20.1 171 328-529 43-241 (567)
199 2l6j_A TPR repeat-containing p 95.5 0.044 1.5E-06 47.0 8.4 64 432-495 4-67 (111)
200 1na3_A Designed protein CTPR2; 95.4 0.1 3.6E-06 42.6 10.2 64 228-293 9-72 (91)
201 1klx_A Cysteine rich protein B 95.4 0.1 3.5E-06 47.6 10.9 112 480-615 9-128 (138)
202 1na3_A Designed protein CTPR2; 95.3 0.15 5E-06 41.7 10.6 80 397-478 10-89 (91)
203 2kat_A Uncharacterized protein 95.3 0.09 3.1E-06 45.7 9.7 63 227-291 18-80 (115)
204 2kat_A Uncharacterized protein 95.1 0.11 3.9E-06 45.1 10.0 79 173-256 3-81 (115)
205 1klx_A Cysteine rich protein B 95.0 0.58 2E-05 42.4 14.9 110 170-294 10-127 (138)
206 3mkq_A Coatomer beta'-subunit; 94.7 1.7 5.8E-05 51.9 22.3 158 160-387 604-762 (814)
207 3qwp_A SET and MYND domain-con 94.5 0.19 6.4E-06 55.7 11.8 102 271-388 294-398 (429)
208 3qwp_A SET and MYND domain-con 94.4 0.3 1E-05 54.0 13.4 98 195-292 292-399 (429)
209 3qww_A SET and MYND domain-con 94.4 0.13 4.4E-06 57.0 10.1 94 276-388 310-409 (433)
210 3mkq_B Coatomer subunit alpha; 94.3 1.6 5.5E-05 41.3 16.0 129 474-645 13-141 (177)
211 3ma5_A Tetratricopeptide repea 94.3 0.13 4.4E-06 43.7 7.9 64 189-256 6-69 (100)
212 3qww_A SET and MYND domain-con 94.3 0.17 5.9E-06 56.0 10.9 91 202-292 310-410 (433)
213 3ma5_A Tetratricopeptide repea 94.0 0.2 7E-06 42.4 8.6 64 263-342 6-69 (100)
214 1zu2_A Mitochondrial import re 93.9 0.14 4.7E-06 47.9 7.8 113 201-343 13-147 (158)
215 1zu2_A Mitochondrial import re 93.6 0.11 3.8E-06 48.5 6.5 97 444-557 14-132 (158)
216 3ly7_A Transcriptional activat 93.1 1.6 5.5E-05 46.6 15.3 144 186-352 190-346 (372)
217 1wy6_A Hypothetical protein ST 91.9 6.3 0.00021 35.3 14.7 131 517-651 8-157 (172)
218 3ly7_A Transcriptional activat 91.2 4.1 0.00014 43.5 15.6 67 365-436 281-347 (372)
219 2kc7_A BFR218_protein; tetratr 90.4 0.91 3.1E-05 37.7 8.1 56 441-496 9-65 (99)
220 1wy6_A Hypothetical protein ST 90.2 9.8 0.00034 34.1 15.4 138 374-546 20-157 (172)
221 3mkq_B Coatomer subunit alpha; 89.5 14 0.00048 34.8 17.7 45 239-290 16-60 (177)
222 3bee_A Putative YFRE protein; 89.0 2.4 8.3E-05 35.4 9.5 66 431-496 5-73 (93)
223 2kc7_A BFR218_protein; tetratr 87.4 3.6 0.00012 33.8 9.8 57 197-257 7-64 (99)
224 1pc2_A Mitochondria fission pr 87.1 3.5 0.00012 37.9 9.9 85 530-618 14-103 (152)
225 4b4t_P 26S proteasome regulato 86.9 20 0.00067 39.5 18.0 190 375-577 30-246 (445)
226 3bee_A Putative YFRE protein; 84.6 10 0.00035 31.4 11.1 66 188-257 4-72 (93)
227 1pc2_A Mitochondria fission pr 84.0 5.5 0.00019 36.6 9.7 48 447-494 50-99 (152)
228 3u64_A Protein TP_0956; tetrat 80.9 5.9 0.0002 40.7 9.4 97 205-321 178-284 (301)
229 2v5f_A Prolyl 4-hydroxylase su 80.7 5.8 0.0002 33.5 8.2 69 188-256 3-74 (104)
230 3u64_A Protein TP_0956; tetrat 79.7 10 0.00036 38.8 10.7 92 530-625 179-283 (301)
231 2v5f_A Prolyl 4-hydroxylase su 79.3 16 0.00053 30.7 10.5 62 399-460 8-74 (104)
232 2ff4_A Probable regulatory pro 77.1 36 0.0012 36.5 15.1 129 189-352 111-248 (388)
233 1v54_E Cytochrome C oxidase po 76.3 8.1 0.00028 32.6 7.1 59 414-473 28-86 (109)
234 1nzn_A CGI-135 protein, fissio 72.0 27 0.00091 30.9 10.0 82 529-612 16-102 (126)
235 2ff4_A Probable regulatory pro 71.5 14 0.00047 39.9 9.8 57 470-541 175-232 (388)
236 4b4t_P 26S proteasome regulato 70.7 1.3E+02 0.0043 32.9 22.0 197 278-494 30-246 (445)
237 4h7y_A Dual specificity protei 70.6 49 0.0017 30.2 11.4 32 464-495 11-48 (161)
238 4h7y_A Dual specificity protei 69.6 35 0.0012 31.2 10.2 112 311-431 10-128 (161)
239 4gns_B Protein CSD3, chitin bi 67.9 53 0.0018 38.5 14.3 128 159-291 252-398 (754)
240 3lvg_A Clathrin heavy chain 1; 66.0 0.0015 5.1E-08 71.2 -22.4 263 264-604 54-324 (624)
241 4gns_B Protein CSD3, chitin bi 65.4 24 0.00083 41.4 10.7 129 365-493 252-398 (754)
242 2y69_E Cytochrome C oxidase su 64.8 18 0.00062 32.2 7.1 60 414-474 71-130 (152)
243 4ady_A RPN2, 26S proteasome re 63.3 2.5E+02 0.0087 33.7 23.4 316 237-598 383-720 (963)
244 1nzn_A CGI-135 protein, fissio 63.1 44 0.0015 29.5 9.4 65 430-494 33-102 (126)
245 1v54_E Cytochrome C oxidase po 63.0 29 0.00098 29.3 7.6 67 372-440 20-87 (109)
246 3lvg_A Clathrin heavy chain 1; 60.6 0.0087 3E-07 65.3 -17.7 211 228-488 54-284 (624)
247 4fhn_B Nucleoporin NUP120; pro 59.0 59 0.002 40.4 13.4 28 316-343 940-967 (1139)
248 3txn_A 26S proteasome regulato 57.6 2E+02 0.0069 30.7 21.7 242 399-658 22-292 (394)
249 4fhn_B Nucleoporin NUP120; pro 56.3 1.2E+02 0.0042 37.6 15.6 164 234-413 818-988 (1139)
250 3esl_A Checkpoint serine/threo 55.9 1E+02 0.0036 29.4 11.4 57 327-394 92-148 (202)
251 3ffl_A Anaphase-promoting comp 52.5 76 0.0026 29.4 9.5 105 390-494 12-150 (167)
252 2y69_E Cytochrome C oxidase su 49.6 62 0.0021 28.8 7.9 63 376-440 68-130 (152)
253 1wdy_A 2-5A-dependent ribonucl 48.6 21 0.00071 35.6 5.8 251 365-652 6-279 (285)
254 3okq_A BUD site selection prot 45.2 11 0.00038 33.6 2.5 26 1-26 37-62 (141)
255 4a1g_A Mitotic checkpoint seri 44.6 1.8E+02 0.0062 26.4 11.0 53 331-394 82-134 (152)
256 4b4t_R RPN7, 26S proteasome re 40.9 1.6E+02 0.0055 31.8 11.8 94 365-460 135-236 (429)
257 3eiq_C Programmed cell death p 40.6 2.9E+02 0.0099 29.0 13.1 64 587-651 220-285 (358)
258 2wpv_A GET4, UPF0363 protein Y 37.2 3.6E+02 0.012 27.7 18.6 152 155-342 33-216 (312)
259 1jei_A Emerin; membrane protei 36.9 12 0.00042 27.3 1.2 24 2-26 9-32 (53)
260 4b4t_R RPN7, 26S proteasome re 34.7 1.8E+02 0.0062 31.4 11.0 97 516-612 133-236 (429)
261 2p58_C Putative type III secre 34.6 1.8E+02 0.0061 24.5 7.9 32 310-343 67-98 (116)
262 2p58_C Putative type III secre 33.4 2.2E+02 0.0074 24.0 8.2 78 411-496 22-99 (116)
263 2uwj_G Type III export protein 30.7 1.7E+02 0.006 24.5 7.2 33 310-344 66-98 (115)
264 2wvi_A Mitotic checkpoint seri 30.6 3.2E+02 0.011 25.1 10.8 53 331-394 77-129 (164)
265 3o48_A Mitochondria fission 1 30.3 2.6E+02 0.0089 24.8 8.9 72 546-619 37-111 (134)
266 1wdy_A 2-5A-dependent ribonucl 30.0 58 0.002 32.2 5.6 181 319-537 41-239 (285)
267 3eiq_C Programmed cell death p 30.0 3.8E+02 0.013 28.1 11.9 76 398-478 219-296 (358)
268 1k1a_A B-cell lymphoma 3-encod 29.9 1.4E+02 0.0047 28.5 8.3 26 367-392 12-37 (241)
269 2uwj_G Type III export protein 29.7 2.1E+02 0.0072 24.0 7.5 78 411-496 21-98 (115)
270 2zu6_B Programmed cell death p 28.6 1.8E+02 0.006 29.9 8.9 65 587-652 169-235 (307)
271 4aez_C MAD3, mitotic spindle c 28.5 1.7E+02 0.0058 28.5 8.1 53 331-394 131-183 (223)
272 3esl_A Checkpoint serine/threo 28.0 2.7E+02 0.0092 26.6 9.3 55 528-582 93-148 (202)
273 3o48_A Mitochondria fission 1 27.9 3.2E+02 0.011 24.2 11.4 67 582-648 38-107 (134)
274 1k1a_A B-cell lymphoma 3-encod 27.8 79 0.0027 30.3 6.0 55 320-384 12-66 (241)
275 2zu6_B Programmed cell death p 26.9 4.6E+02 0.016 26.7 11.7 60 399-460 169-230 (307)
276 3lpz_A GET4 (YOR164C homolog); 26.8 5.5E+02 0.019 26.6 21.5 165 365-577 39-215 (336)
277 1zbp_A Hypothetical protein VP 25.8 5.1E+02 0.017 25.9 12.8 16 632-647 113-128 (273)
278 2nsz_A Programmed cell death p 25.8 2.5E+02 0.0086 24.5 8.3 63 588-651 11-75 (129)
279 4fke_A Aminopeptidase N; zinc 25.4 9.1E+02 0.031 28.7 15.9 158 318-494 690-859 (909)
280 1y8m_A FIS1; mitochondria, unk 24.4 3.8E+02 0.013 24.0 10.3 87 482-583 19-109 (144)
281 1zbp_A Hypothetical protein VP 23.6 5.6E+02 0.019 25.6 15.0 26 586-611 100-127 (273)
282 3hra_A Ankyrin repeat family p 23.0 73 0.0025 29.6 4.5 17 370-386 11-27 (201)
283 3ffl_A Anaphase-promoting comp 22.1 2.6E+02 0.0087 25.8 7.6 61 159-219 24-92 (167)
284 3hra_A Ankyrin repeat family p 21.2 3.1E+02 0.011 24.9 8.8 157 474-653 10-172 (201)
285 2ion_A PDCD4, programmed cell 20.2 3.3E+02 0.011 24.5 8.1 63 588-651 13-77 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-34 Score=341.88 Aligned_cols=464 Identities=9% Similarity=-0.039 Sum_probs=393.1
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 153 SEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 153 ~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
.++..++.++..+.+.|.+++|+.+|++|.. ..|+..++..++.+|...|+++.|..+|+.+... .++..+++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ 154 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-----NRSSACRY 154 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-----GTCHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-----ccchhHHH
Confidence 5678889999999999999999999999985 4589999999999999999999999999987532 35889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcC--------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhh
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDC--------------NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRI 298 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~--------------gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l 298 (857)
.++.+|.++|++++|+++|+++.... |..++..+|+.++.+|.+.|++++|.++|++|.+.+....
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999543321 2344689999999999999999999999999987652210
Q ss_pred h---hh-------------------hhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 299 K---NM-------------------HRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 299 ~---~m-------------------~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
. .+ +.+.......++..+|+.++..|.+.|++++|.++|++|.+. .++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~---- 308 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL---- 308 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH----
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH----
Confidence 0 00 111111112223345666677888999999999999999876 4677776
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
+.++.+|.+.|++++|..+|++|.+.+.. +..+|+.++.+|.+.|++++|..+|+++.. ..+.+..+++
T Consensus 309 --------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~ 377 (597)
T 2xpi_A 309 --------LCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWL 377 (597)
T ss_dssp --------HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHH
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHH
Confidence 89999999999999999999999876633 556799999999999999999999999986 3456788999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 516 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t 516 (857)
.+..+|.+.|++++|.++|+.+.+..+.+..+|+.++.+|.+.|++++|+++|++|...+ ..+..+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~ 443 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--------------QGTHLP 443 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------------TTCSHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------ccchHH
Confidence 999999999999999999999987555678999999999999999999999999998855 237789
Q ss_pred hhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 003016 517 YSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIPH--PLFFTEM 590 (857)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p~--~~~~~~l 590 (857)
|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+.+.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999998753 447889999999999999999999999999876 67887 7899999
Q ss_pred HHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 591 LIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 591 i~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
..+|.+.|++++|+++++++...+ ..+..+|..+...+...|++++|.+.++.+.+.. |+.+...
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 587 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS--PNEIMAS 587 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCChHHH
Confidence 999999999999999999987543 2367899999999999999999999999999764 4444443
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-31 Score=316.35 Aligned_cols=457 Identities=12% Similarity=0.022 Sum_probs=377.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
.++...|+.++..|.+.|+++.|..+|+.+... .|+..+++.++.+|.+.|++++|..+|+.+.. ..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 152 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI-----TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSAC 152 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh-----CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhH
Confidence 367889999999999999999999999999753 25778999999999999999999999999864 2589999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|+.++.+|.+.|++++|.++|+++...........-...++.+..++..+|+.++.+|.+.|++++|.++|++|.+.+
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 230 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-- 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 999999999999999999999953221100000000011222345579999999999999999999999999999864
Q ss_pred CCHH-HHHHHHHH--------------------------HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH
Q 003016 347 PSAA-TYGLAMES--------------------------YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY 399 (857)
Q Consensus 347 pd~~-t~~~ll~~--------------------------~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~ 399 (857)
|+.. .+..+... ....+|+.++.+|.+.|++++|.++|++|.+. .++..+|
T Consensus 231 p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 4322 22211110 01334566788999999999999999999876 5789999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc
Q 003016 400 YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN 479 (857)
Q Consensus 400 ~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~ 479 (857)
+.++.+|.+.|++++|+.+|++|... + +.+..+++.++.+|.+.|++++|..+|+.+.+..+.+..+|+.++.+|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEI-D-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence 99999999999999999999999872 2 346778999999999999999999999999886677899999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003016 480 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE 558 (857)
Q Consensus 480 g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~ 558 (857)
|++++|.++|+++.... | +..+|+.++.+|...|++++|.++|++|.+.+ +.+..+|+.+..+
T Consensus 387 g~~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 450 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD---------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ 450 (597)
T ss_dssp TCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 99999999999998854 5 57799999999999999999999999999753 4477899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CCccC--HHHHHHHHHHhhhc
Q 003016 559 ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA----PFHIT--ERQWTELFESNEDR 632 (857)
Q Consensus 559 ~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~----~~~p~--~~~~~~Ll~a~~~~ 632 (857)
|.+.|++++|.++|+.+.+.. +.+..+|+.++..|.+.|++++|+++|++|... +..|+ ..+|..+..+|...
T Consensus 451 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 451 HMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999998753 347899999999999999999999999999765 77888 78999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHHHhccCchhhhHh
Q 003016 633 ISRDKLEKLLNALCNCNAASSEITVSNLSRALHALCRSEKERDLSS 678 (857)
Q Consensus 633 g~~e~~~~l~~~m~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~~ 678 (857)
|+++.|.++++.+.+.+ |+.+...... ...+...++.+++.+
T Consensus 530 g~~~~A~~~~~~~~~~~--p~~~~~~~~l--~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLS--TNDANVHTAI--ALVYLHKKIPGLAIT 571 (597)
T ss_dssp TCHHHHHHHHHHHHHHS--SCCHHHHHHH--HHHHHHTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC--CCChHHHHHH--HHHHHHhCCHHHHHH
Confidence 99999999999999775 4444333333 334445666777766
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3e-28 Score=279.84 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG 410 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g 410 (857)
..+..+.+.+.+.++.+..... ++.+|++|++.|++++|.++|++|.+.|+.||..|||+||.+|++.+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~-----------l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~ 75 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEAL-----------LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE 75 (501)
T ss_dssp -----------------CHHHH-----------HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHhcccCCCHHH-----------HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCC
Confidence 3455667788888776655432 38899999999999999999999999999999999999999999876
Q ss_pred C---------HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcC
Q 003016 411 R---------WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRND 480 (857)
Q Consensus 411 ~---------~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g 480 (857)
. .++|.++|++|.. .|+.||..||++||.+|++.|++++|.++|++|.+ ++.||..+||+||.+|++.|
T Consensus 76 ~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 76 AATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred chhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 5 6889999999999 89999999999999999999999999999999998 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003016 481 MFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEAS 560 (857)
Q Consensus 481 ~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~ 560 (857)
++++|.++|++|.+.| +.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+
T Consensus 155 ~~~~A~~l~~~M~~~G-------------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 155 DADKAYEVDAHMVESE-------------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CHHHHHHHHHHHHHTT-------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-------------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 9999999999999999 999999999999999999999999999999999999999999999999987
Q ss_pred Hc
Q 003016 561 RA 562 (857)
Q Consensus 561 ~~ 562 (857)
..
T Consensus 222 s~ 223 (501)
T 4g26_A 222 SE 223 (501)
T ss_dssp SH
T ss_pred cC
Confidence 53
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.4e-28 Score=278.37 Aligned_cols=206 Identities=11% Similarity=0.062 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC---------
Q 003016 378 NEAVAAVRNMEQRGVVGT-ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH--------- 447 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~--------- 447 (857)
..+..+.+++.+++.... ..+++.+|.+|++.|++++|+++|++|.+ .|+.||.+|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 455667778888876654 34688999999999999999999999999 8999999999999999987665
Q ss_pred HHHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHh
Q 003016 448 IDDCISIFQHMKD-HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT 526 (857)
Q Consensus 448 ~~~A~~if~~m~~-~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~ 526 (857)
++.|.++|++|.. |+.||..|||+||.+|++.|++++|.++|++|...| +.||..||+++|.+|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-------------~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-------------IQPRLRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------------CCCccceehHHHHHHHH
Confidence 7889999999988 899999999999999999999999999999999999 99999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 003016 527 AHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ 597 (857)
Q Consensus 527 ~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~ 597 (857)
.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|...
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888753
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.8e-21 Score=216.85 Aligned_cols=373 Identities=13% Similarity=0.070 Sum_probs=292.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++..... .+.+..+|..+..+|.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE----PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHH
Confidence 345667788888888888887642 236677778888888889999998888887763 34577888889999999
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++++|...|+++.... +.+..+|..+..++.+.|++++|...|.++.+. .|+....
T Consensus 80 ~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~---- 137 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK----------------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCV---- 137 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHH----
T ss_pred CCCHHHHHHHHHHHHHcC----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH----
Confidence 999999999998887642 335667888888888999999999999888875 4555443
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
+..+...|...|++++|..+|+++.+... .+..+|+.+..+|.+.|++++|...|+++... .+.+...+.
T Consensus 138 -------~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 207 (388)
T 1w3b_A 138 -------RSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYI 207 (388)
T ss_dssp -------HHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred -------HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 46777888888999999999988877643 34667888888899999999999999888772 223456778
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHh
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEY 515 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~ 515 (857)
.+...+...|++++|...|.......+.+..+|..+...|.+.|++++|.+.|+++.... | +..
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~ 272 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---------------PHFPD 272 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---------------SSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------CCCHH
Confidence 888888889999999998888877445568888889999999999999999999888754 5 456
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAI 595 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~ 595 (857)
+|..+..++...|++++|...|+++.+. .+.+..++..+...+...|++++|...|+.+.+.. +.+..+|..+...+.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 7888888888889999999999888875 24567788888888889999999999998887642 335778888888888
Q ss_pred HcCCHHHHHHHHHHhhhCCCccCH-HHHHHHH
Q 003016 596 VQSNYEKAVALINAMAYAPFHITE-RQWTELF 626 (857)
Q Consensus 596 ~~g~~~~A~~l~~~M~~~~~~p~~-~~~~~Ll 626 (857)
+.|++++|+..++++.. ..|+. ..|..+-
T Consensus 351 ~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg 380 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIR--ISPTFADAYSNMG 380 (388)
T ss_dssp TTTCCHHHHHHHHHHHT--TCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHhHH
Confidence 88999999999988764 34543 3444433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=1.4e-20 Score=209.65 Aligned_cols=379 Identities=13% Similarity=0.053 Sum_probs=317.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC
Q 003016 163 DRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG 242 (857)
Q Consensus 163 ~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g 242 (857)
..+.+.|.+++|...+..+.+.. +.+...+..+...+...|+++.|...++..++. .+.+..+|+.+...|.+.|
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCC
Confidence 34567899999999999988764 334556666777788899999999999998874 3348899999999999999
Q ss_pred ChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
++++|...|+++.+. .| +..+|..+..++.+.|++++|.+.|+++.... +.+...+..+.
T Consensus 82 ~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~ 142 (388)
T 1w3b_A 82 QLQEAIEHYRHALRL---KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----------------PDLYCVRSDLG 142 (388)
T ss_dssp CHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----------------TTCTHHHHHHH
T ss_pred CHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCcHHHHHHHH
Confidence 999999999999873 35 46789999999999999999999999998743 33456677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHH
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYE 401 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~ 401 (857)
..+...|++++|.++|+++.+. .|+.... |+.+...|.+.|++++|...|+++.+.+. .+...|..
T Consensus 143 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 208 (388)
T 1w3b_A 143 NLLKALGRLEEAKACYLKAIET--QPNFAVA-----------WSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYIN 208 (388)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 8899999999999999999876 3543322 48899999999999999999999988764 35677999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM 481 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~ 481 (857)
+...+...|++++|+..|.+.... .+.+..++..+...|.+.|++++|...|+.+.+..+.+..+|+.+...|.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999998772 233577899999999999999999999999988555678899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 482 FSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR 561 (857)
Q Consensus 482 ~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~ 561 (857)
+++|.+.|+++.+.. ..+..+|..+...+...|++++|...++++.+. .+.+..++..+...|.+
T Consensus 287 ~~~A~~~~~~al~~~--------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 287 VAEAEDCYNTALRLC--------------PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHHHHC--------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhC--------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 999999999998864 246788999999999999999999999999864 23357789999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 003016 562 AGKCHLLEHAFDSLLEAGEIP-HPLFFTEMLIQAIVQS 598 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p-~~~~~~~li~~~~~~g 598 (857)
.|++++|...|+.+.+. .| +...|..+-..+...|
T Consensus 352 ~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999874 44 4566666655554443
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.8e-18 Score=194.99 Aligned_cols=425 Identities=9% Similarity=-0.043 Sum_probs=318.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
..+...-..+.+.|.+++|+..|.++.+.. |+..++..+..++...|+++.|...++.+++.. +.+..+|..+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~ 80 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK----PDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC----hHHHHHHHHHH
Confidence 344555677888999999999999999876 799999999999999999999999999998753 33778999999
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC----------------------
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK---------------------- 293 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---------------------- 293 (857)
.+|.+.|++++|...|+++.... +++......++..+........+.+.+..+...
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 99999999999999999998742 234444555555444433333333333211111
Q ss_pred CChhhhhhhhhcCCCCC-------CCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCCCCCHHHHHHHHHH
Q 003016 294 PSKRIKNMHRKNWDPVL-------EPDLVVYNAVLNACVP---SHQWKGVFWVFKQLRK-----SGLKPSAATYGLAMES 358 (857)
Q Consensus 294 g~~~l~~m~~k~f~~~~-------~pd~~t~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ll~~ 358 (857)
+....+..+...+.... +.+...+......+.. .|++++|..+|+++.+ ..-.|+..... -
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~ 234 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK----E 234 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----H
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----h
Confidence 00001111111111111 1224444444444444 8999999999999988 42233321000 0
Q ss_pred HHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 003016 359 YRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGL 438 (857)
Q Consensus 359 ~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 438 (857)
....++..+...|...|++++|...|+++.+.+.. ..+|..+..+|...|++++|...|+++.. ..+.+..++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l 310 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHH
Confidence 00123578899999999999999999999877644 77899999999999999999999999987 234456788889
Q ss_pred HHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHh
Q 003016 439 IISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTY 517 (857)
Q Consensus 439 l~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~ 517 (857)
...|...|++++|...|+......+.+...|..+...|.+.|++++|..+|+++.... | +..+|
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~ 375 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---------------PEAPEVP 375 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---------------TTCSHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---------------ccCHHHH
Confidence 9999999999999999999988655678899999999999999999999999998754 4 45678
Q ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003016 518 SSMLEASATAHQWEYFEYVYKGMALSGC-QLD----QTKHAWLLVEASR---AGKCHLLEHAFDSLLEAGEIPHPLFFTE 589 (857)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~l~~~m~~~g~-~pd----~~t~~~Ll~~~~~---~G~~~~A~~~~~~m~~~gi~p~~~~~~~ 589 (857)
..+...+...|++++|...++++.+..- .++ ...+..+...|.. .|++++|...|+.+.+.. +.+..+|..
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 454 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 8888999999999999999999876421 111 3378888888999 999999999999988753 335778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh
Q 003016 590 MLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 590 li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+...+.+.|++++|...+++...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=9.4e-18 Score=190.18 Aligned_cols=325 Identities=12% Similarity=0.012 Sum_probs=262.0
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+..++..+...|.+.|++++|+.+|+.+.+. .+.+..+|..+..+|...|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK----------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----------
Confidence 36778888888888999999999999888773 33468888888888999999999999998887753
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSA----ATYGLAMESYRRCLLKVLVRAFWEEGKINEAV 381 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~ 381 (857)
+.+..+|..+..+|.+.|++++|...|+.+.+. .|+. ..+..+...+....+..+...|.+.|++++|.
T Consensus 91 -----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 91 -----MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 446778888888888899999999999888865 4544 33433333333333455667799999999999
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 382 AAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 382 ~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
..|+++.+... .+..+|..+..+|.+.|++++|+..|+++... .+.+..++..+...|...|++++|...|+.+...
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 164 AFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999987653 36778999999999999999999999999872 3456788999999999999999999999999875
Q ss_pred CCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-----HhHhhhhHHHH
Q 003016 462 CEPNIGTVNAM------------LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-----EYTYSSMLEAS 524 (857)
Q Consensus 462 ~~p~~~~~~~l------------i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-----~~t~~~ll~a~ 524 (857)
.+.+...+..+ ...|.+.|++++|...|+++.... |+ ...|..+...+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---------------PSIAEYTVRSKERICHCF 305 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------CSSHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------CcchHHHHHHHHHHHHHH
Confidence 55566666665 889999999999999999998854 55 34788888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 003016 525 ATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEML 591 (857)
Q Consensus 525 ~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li 591 (857)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+.+.+. .|+ ...+..+-
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 99999999999999988742 335788999999999999999999999999874 453 45555544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=2.3e-17 Score=187.03 Aligned_cols=313 Identities=13% Similarity=0.119 Sum_probs=256.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+...+..+...+...|+++.|..+|+.+++. .+.+..+|..+..+|.+.|++++|...|+++.+. -+.+..+|
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 97 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL--KMDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcHHHH
Confidence 45567888889999999999999999998864 2347889999999999999999999999999874 23458899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH---HHHHHHHH------------HHHhcCChHH
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL---VVYNAVLN------------ACVPSHQWKG 332 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~---~t~~~li~------------~~~~~g~~~~ 332 (857)
..+..+|.+.|++++|...|+++.... +.+. .+|..+.. .+...|++++
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSN----------------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC----------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999998753 2334 56666544 4889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCH
Q 003016 333 VFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRW 412 (857)
Q Consensus 333 A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~ 412 (857)
|..+|+.+.+.. +.+..++ ..+..+|.+.|++++|..+|+++.+.+. .+..+|..+..+|...|++
T Consensus 162 A~~~~~~~~~~~-~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELR------------ELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHH------------HHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC-CCChHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 999999998763 2244444 8899999999999999999999987642 3577899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCc-HHHHHHH------------HHHHHcCCCHHHHHHHHHHHhhCCCCC----HHHHHHHHHH
Q 003016 413 QDAMLVVEKIKSLRHSKPL-EITFTGL------------IISSMDGGHIDDCISIFQHMKDHCEPN----IGTVNAMLKV 475 (857)
Q Consensus 413 ~~A~~l~~~m~~~~g~~pd-~~t~~~l------------l~a~~~~g~~~~A~~if~~m~~~~~p~----~~~~~~li~~ 475 (857)
++|+..|+++... .|+ ...+..+ ...|.+.|++++|...|+.+.+..+.+ ..+|..+..+
T Consensus 228 ~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 228 ELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999873 233 3334333 788999999999999999998732223 4588999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHA 553 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~ 553 (857)
|.+.|++++|+..++++.... | +..+|..+..+|...|++++|...++++.+ +.|+ ...+.
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~---------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 367 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQME---------------PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIRE 367 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHH
Confidence 999999999999999998754 5 678999999999999999999999999987 5565 44444
Q ss_pred HHH
Q 003016 554 WLL 556 (857)
Q Consensus 554 ~Ll 556 (857)
.+-
T Consensus 368 ~l~ 370 (450)
T 2y4t_A 368 GLE 370 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.8e-17 Score=185.53 Aligned_cols=426 Identities=9% Similarity=0.019 Sum_probs=319.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+......+...|+++.|...|+.+++. .|+..+|..+..+|.+.|++++|...|+++.+. -+.+..+|..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 78 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYSKVLLR 78 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHH
Confidence 345667778888999999999999999863 268899999999999999999999999998874 2345788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG----- 344 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 344 (857)
+..+|.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+
T Consensus 79 l~~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 142 (514)
T 2gw1_A 79 RASANEGLGKFADAMFDLSVLSLNG----------------DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE 142 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS----------------SCCGGGTHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC----------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998764 3444445555555444333333333332221111
Q ss_pred --------------CCCCHHHHHHHHHHHH-------------HhHHHHHHHHHH---HcCCHHHHHHHHHHHhh-----
Q 003016 345 --------------LKPSAATYGLAMESYR-------------RCLLKVLVRAFW---EEGKINEAVAAVRNMEQ----- 389 (857)
Q Consensus 345 --------------~~pd~~t~~~ll~~~~-------------~~~~~~Li~~y~---k~g~~~~A~~lf~~m~~----- 389 (857)
..|+.......+..+. ...+..+...+. +.|++++|..+|+++.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 143 LSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp --------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhh
Confidence 1111111100000000 001233333344 38999999999999887
Q ss_pred cCC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC
Q 003016 390 RGV--------VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH 461 (857)
Q Consensus 390 ~~~--------~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~ 461 (857)
..- ..+..+|..+...+...|++++|...|+++... . |+..++..+...|...|++++|...|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred hccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 311 223567888999999999999999999999873 2 33778899999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHH
Q 003016 462 CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGM 540 (857)
Q Consensus 462 ~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m 540 (857)
.+.+..+|..+...|...|++++|...|++..... | +..++..+...+...|++++|...++.+
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD---------------PENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC---------------SSCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66778899999999999999999999999998855 4 4568888889999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHhhh
Q 003016 541 ALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPH----PLFFTEMLIQAIV---QSNYEKAVALINAMAY 612 (857)
Q Consensus 541 ~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~M~~ 612 (857)
.+.. +.+..++..+...|...|++++|...|+.+.+. .-.++ ...|..+...+.. .|++++|...+++...
T Consensus 365 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 8753 335678888899999999999999999988764 11222 4488889999999 9999999999999765
Q ss_pred CCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 613 APFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 613 ~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
.. ..+..++..+...+...|+.+.|...++...+.+ |+.+.....
T Consensus 444 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~ 488 (514)
T 2gw1_A 444 LD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQA 488 (514)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHH
Confidence 32 2245678888889999999999999999998764 444444433
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.79 E-value=4.2e-16 Score=180.73 Aligned_cols=419 Identities=10% Similarity=-0.015 Sum_probs=306.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHH
Q 003016 156 EAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLL 235 (857)
Q Consensus 156 ~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li 235 (857)
..+..+-..+.+.|.+++|+..|+++.+.. +.+..++..+...+...|+++.|.+.++.+++.. +.+..++..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK----PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CchHHHHHHHH
Confidence 445666677888999999999999999875 4577889999999999999999999999998753 33788999999
Q ss_pred HHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC---------hhhhhhhh---
Q 003016 236 AILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPS---------KRIKNMHR--- 303 (857)
Q Consensus 236 ~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~~l~~m~~--- 303 (857)
..|.+.|++++|...|+.+.. .|+ ..+..+..+...+...+|...++++..... ...+..|.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSL----NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHhc----CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999999975433 233 233345566666777889999998866410 00000010
Q ss_pred ------hcCCCCC--CCCHH-HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHhHHH
Q 003016 304 ------KNWDPVL--EPDLV-VYNAVLNACVP--------SHQWKGVFWVFKQLRKSGLKPSA-ATYGLAMESYRRCLLK 365 (857)
Q Consensus 304 ------k~f~~~~--~pd~~-t~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~~~~~~~~~ 365 (857)
..+.... .+... .+..+...+.. .|++++|..+++.+.+.. |+. ..+... ..++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~-----~~~~~ 247 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENA-----ALALC 247 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH-----HHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHH-----HHHHH
Confidence 0111111 11111 22222222222 247899999999998753 432 211111 11236
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC
Q 003016 366 VLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG 445 (857)
Q Consensus 366 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 445 (857)
.+...|...|++++|...|++..+.+ |+..+|..+...|...|++++|...|.+.... .+.+..++..+...+...
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhc
Confidence 77788999999999999999998865 44778889999999999999999999998873 234567889999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHH
Q 003016 446 GHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEAS 524 (857)
Q Consensus 446 g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~ 524 (857)
|++++|...|+...+..+.+...|..+...|.+.|++++|.+.|+++.... | +...|..+...+
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~l~~~~ 388 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---------------PTLPEVPTFFAEIL 388 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHH
Confidence 999999999999988555567889999999999999999999999998865 4 456888888999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003016 525 ATAHQWEYFEYVYKGMALSG-----CQLDQTKHAWLLVEASRA----------GKCHLLEHAFDSLLEAGEIPHPLFFTE 589 (857)
Q Consensus 525 ~~~g~~~~a~~l~~~m~~~g-----~~pd~~t~~~Ll~~~~~~----------G~~~~A~~~~~~m~~~gi~p~~~~~~~ 589 (857)
...|++++|...|+++.+.. .......+..+...|.+. |++++|..+|+...+.. +.+...|..
T Consensus 389 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~ 467 (537)
T 3fp2_A 389 TDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIG 467 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 99999999999999987642 111122344445567777 99999999999988752 235788889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhh
Q 003016 590 MLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 590 li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
+...+...|++++|...|++...
T Consensus 468 l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 468 LAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999764
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=1.2e-15 Score=176.86 Aligned_cols=416 Identities=13% Similarity=0.074 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+..+...+.+.|+++.|...|+.+++.. +.+..+|..+...|.+.|++++|...|+++.+. -+.+..+|..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 98 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD----PNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHH
Confidence 3466777888999999999999999998753 347899999999999999999999999999874 2346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS------ 343 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------ 343 (857)
+..++...|++++|...|+.+.. .|+.. +..+..+...+....|...++.+...
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~~------------------~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~ 158 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLSL------------------NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHhc------------------CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999974422 22221 22234455555667788888887543
Q ss_pred CCCCCHHHHHHHHHHHH------------------HhHHHHHHHHHHH--------cCCHHHHHHHHHHHhhcCCCCC--
Q 003016 344 GLKPSAATYGLAMESYR------------------RCLLKVLVRAFWE--------EGKINEAVAAVRNMEQRGVVGT-- 395 (857)
Q Consensus 344 g~~pd~~t~~~ll~~~~------------------~~~~~~Li~~y~k--------~g~~~~A~~lf~~m~~~~~~~d-- 395 (857)
...|+.......+..+. ...+..+...|.. .|++++|..+|+++.+......
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~ 238 (537)
T 3fp2_A 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238 (537)
T ss_dssp CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHH
T ss_pred cccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchh
Confidence 23344443322221110 0012333333322 2588999999999987653311
Q ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 396 ----ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 396 ----~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
..+|..+...+...|++++|...|.+.... .|+..++..+...|...|++++|...|+.+.+..+.+..+|..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHH
Confidence 235777778889999999999999999873 4567788889999999999999999999998866678899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT 550 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~ 550 (857)
+...|...|++++|.+.|++..... | +..+|..+...+...|++++|...++++.+.. +.+..
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 379 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLN---------------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPE 379 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999999998865 4 45688889999999999999999999998753 33466
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHhhhCCC
Q 003016 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAG-----EIPHPLFFTEMLIQAIVQ----------SNYEKAVALINAMAYAPF 615 (857)
Q Consensus 551 t~~~Ll~~~~~~G~~~~A~~~~~~m~~~g-----i~p~~~~~~~li~~~~~~----------g~~~~A~~l~~~M~~~~~ 615 (857)
.+..+...|...|++++|...|+.+.+.. .......+..+...+.+. |++++|+..+++.....
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~- 458 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD- 458 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-
Confidence 88888999999999999999999887641 112233344555677777 99999999999976531
Q ss_pred ccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 616 HITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 616 ~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..+..+|..+-..+...|+.+.|...++...+....
T Consensus 459 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 459 PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 234578888999999999999999999999876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=8.8e-14 Score=151.37 Aligned_cols=324 Identities=10% Similarity=-0.010 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
..+..+...|.+.|++++|...|+++... .+.+..+|..+...+...|++++|...|+++....
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------- 67 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------------- 67 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------
Confidence 34445555555555555555555555542 12235555555555555566666666655555431
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHH-HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP---SAA-TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~-t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
+.+...|..+...+...|++++|...|+.+.+. .| +.. .+..+........+..+...|...|++++|..+|
T Consensus 68 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 143 (359)
T 3ieg_A 68 --MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL 143 (359)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 224455555555555566666666666555543 23 111 1111100001111244577889999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP 464 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p 464 (857)
+++.+... .+..+|..+..+|...|++++|...|++... ..+.+..++..+...|...|++++|...|+...+..+.
T Consensus 144 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 220 (359)
T 3ieg_A 144 DKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220 (359)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence 99987653 3567899999999999999999999999987 33456778899999999999999999999999875445
Q ss_pred CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh-----HhhhhHHHHHhc
Q 003016 465 NIGTVNAM------------LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY-----TYSSMLEASATA 527 (857)
Q Consensus 465 ~~~~~~~l------------i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~-----t~~~ll~a~~~~ 527 (857)
+...+..+ ...+.+.|++++|...|+++.... |+.. .+..+...+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---------------PSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------CSSHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------CCchHHHHHHHHHHHHHHHHc
Confidence 55544432 556788888888888888887754 4432 234455677777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 003016 528 HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQ 593 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~ 593 (857)
|++++|...+++..+.. +.+..++..+...|...|++++|...|+...+. .|+ ...+..+..+
T Consensus 286 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 286 EKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKA 349 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHH
Confidence 88888888888777642 225667777777777777888887777777664 233 4444444333
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=1.4e-13 Score=149.87 Aligned_cols=305 Identities=14% Similarity=0.088 Sum_probs=250.5
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHH
Q 003016 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTK 233 (857)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~ 233 (857)
+++.+..+-..+...|.+++|+..|....+.. +.+..++..+...+...|+++.|...++.+++.. +.+..+|..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~ 76 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK----MDFTAARLQ 76 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCcchHHHH
Confidence 34566777788889999999999999998865 3467789999999999999999999999998753 236789999
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCC----CHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHcCCChh
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYP----DIAAYHSV------------AVTLGQVGLLKELVKLIERMRQKPSKR 297 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~p----d~~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~~ 297 (857)
+...|.+.|++++|...|++.... .| +...|..+ ...+...|++++|..+|+++....
T Consensus 77 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--- 150 (359)
T 3ieg_A 77 RGHLLLKQGKLDEAEDDFKKVLKS---NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--- 150 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc---CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---
Confidence 999999999999999999999873 45 44455554 578899999999999999998753
Q ss_pred hhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH
Q 003016 298 IKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI 377 (857)
Q Consensus 298 l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~ 377 (857)
+.+...+..+...+...|++++|...++.+.+.. +.+..++ ..+...|...|++
T Consensus 151 -------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~------------~~la~~~~~~~~~ 204 (359)
T 3ieg_A 151 -------------VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF------------YKISTLYYQLGDH 204 (359)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH------------HHHHHHHHHHTCH
T ss_pred -------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH------------HHHHHHHHHcCCH
Confidence 4578889999999999999999999999998763 2234443 8899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH--HHHHHHHHHHH
Q 003016 378 NEAVAAVRNMEQRGVVGTASVYY------------ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE--ITFTGLIISSM 443 (857)
Q Consensus 378 ~~A~~lf~~m~~~~~~~d~~t~~------------~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~ 443 (857)
++|...|+...+.... +...|. .+...+.+.|++++|...|++........+.. ..+..+...+.
T Consensus 205 ~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999998876533 233333 23667899999999999999998733221211 23556778899
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.|++++|...|+...+..+.+..+|..+...|.+.|++++|.+.|++..+..
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999988656689999999999999999999999999998844
No 15
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=7.9e-13 Score=153.63 Aligned_cols=413 Identities=9% Similarity=0.029 Sum_probs=299.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
-+...|..++. +...|+++.|+.+|+.+++. .+.+...|..++..+.+.|+++.|..+|++.... .|++..|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~----~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ----FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHH
Confidence 36678888888 47789999999999999874 3347889999999999999999999999999873 4888888
Q ss_pred HHHHHH-HHhcCCHHHHHH----HHHHHHcC-CChhhhhhhhhcCCCCCC-CCHHHHHHHHHHHHh---------cCChH
Q 003016 268 HSVAVT-LGQVGLLKELVK----LIERMRQK-PSKRIKNMHRKNWDPVLE-PDLVVYNAVLNACVP---------SHQWK 331 (857)
Q Consensus 268 ~~li~~-~~~~g~~~~A~~----l~~~m~~~-g~~~l~~m~~k~f~~~~~-pd~~t~~~li~~~~~---------~g~~~ 331 (857)
...+.- ....|+.++|.+ +|+..... | .. ++...|...+....+ .|+++
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g---------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIG---------------MEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTT---------------TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC---------------CCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 888753 345677766655 77766543 3 33 457788887776554 68899
Q ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHH---HHHhHHHHHHHHHHHcCCHHHHHHHHHHHh------hcC---CCCC-
Q 003016 332 GVFWVFKQLRKSGLKPSA---ATYGLAMES---YRRCLLKVLVRAFWEEGKINEAVAAVRNME------QRG---VVGT- 395 (857)
Q Consensus 332 ~A~~l~~~m~~~g~~pd~---~t~~~ll~~---~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~------~~~---~~~d- 395 (857)
.|..+|++.++. |+. ..|...... ....+...++. .+.+++..|..++.++. ++. +.|+
T Consensus 148 ~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 148 AVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhchhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 999999999883 332 222111000 00000011111 13456778888777632 221 2333
Q ss_pred -------HHHHHHHHHHHHHC----CCH----HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc-------CCCHH----
Q 003016 396 -------ASVYYELACCLCNN----GRW----QDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-------GGHID---- 449 (857)
Q Consensus 396 -------~~t~~~lI~~~~~~----g~~----~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-------~g~~~---- 449 (857)
...|...+.....+ ++. .+|..+|++.... .+-+...|......+.+ .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 24676666544332 222 4778889888772 23355667777776664 79987
Q ss_pred ---HHHHHHHHHhhC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH--hHhhhhHHH
Q 003016 450 ---DCISIFQHMKDH-CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE--YTYSSMLEA 523 (857)
Q Consensus 450 ---~A~~if~~m~~~-~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~--~t~~~ll~a 523 (857)
+|..+|+...+. .+.+...|..++..+.+.|++++|..+|+++.... |+. ..|......
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~~~~~~ 365 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE---------------DIDPTLVYIQYMKF 365 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS---------------SSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc---------------ccCchHHHHHHHHH
Confidence 899999999874 55578999999999999999999999999999844 653 478888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 003016 524 SATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVE-ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYE 601 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~-~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~ 601 (857)
+.+.|+++.|..+|++..+. .|+ ...|...... +...|+.++|..+|+...+.. +-+...|..++..+.+.|+.+
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~ 442 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDN 442 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHh
Confidence 88999999999999999874 333 3333332222 346899999999999887752 235789999999999999999
Q ss_pred HHHHHHHHhhhC-CCccC--HHHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 602 KAVALINAMAYA-PFHIT--ERQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 602 ~A~~l~~~M~~~-~~~p~--~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
+|..+|++.... +..|+ ...|...+......|+.+.+..+.+.+.+.
T Consensus 443 ~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 443 NTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998765 34443 568888888888899999999998888754
No 16
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=194.01 Aligned_cols=164 Identities=12% Similarity=0.143 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLR---KSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.--..|||++|++||+.|++++|.++|.+|. ..|+.||.+|| |+||++||+.|++++|.++|++|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTY------------NtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY------------NAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHH------------HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHH------------HHHHHHHHhCCCHHHHHHHHHHH
Confidence 3346799999999999999999999998876 45899999998 99999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC-
Q 003016 388 EQRGVVGTASVYYELACCLCNNGR-WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN- 465 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~-~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~- 465 (857)
.+.|+.||..|||+||.++|+.|+ .++|.++|++|.. .|+.||.+||++++.++.+.+-++.+.+ +..++.|+
T Consensus 192 ~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrk----v~P~f~p~~ 266 (1134)
T 3spa_A 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHK----VKPTFSLPP 266 (1134)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGG----GCCCCCCCC
T ss_pred HHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHH----hCcccCCCC
Confidence 999999999999999999999998 4789999999999 8999999999999987766544443333 33333333
Q ss_pred -----HHHHHHHHHHHHhcC---------CHHHHHHHHHH
Q 003016 466 -----IGTVNAMLKVYSRND---------MFSKAKELFEE 491 (857)
Q Consensus 466 -----~~~~~~li~~~~~~g---------~~~~A~~lf~~ 491 (857)
+.+...|.+.|.+.+ ..++-.++|++
T Consensus 267 ~~~~~~~t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 267 QLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCCCCCCCCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred CCcccccchHHHHHHHccCCCCcCccccCCHHHHHHHHHH
Confidence 556677888888766 24566666664
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=3.3e-17 Score=192.87 Aligned_cols=150 Identities=17% Similarity=0.086 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHc---CCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQ---KPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQL 340 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 340 (857)
..|||+||.+|++.|++++|.++|.+|.. .| +.||++|||+||.+||+.|++++|.++|++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG---------------~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR---------------KLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH---------------TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC---------------CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 56888888888888888888888877764 35 8999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 003016 341 RKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK-INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVV 419 (857)
Q Consensus 341 ~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~-~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~ 419 (857)
.+.|+.||.+|| |+||+++|+.|+ .++|.++|++|.++|+.||..||++++.++.+.+ +++..
T Consensus 192 ~~~G~~PDvvTY------------ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~V 255 (1134)
T 3spa_A 192 KDAGLTPDLLSY------------AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAV 255 (1134)
T ss_dssp HHTTCCCCHHHH------------HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHH
T ss_pred HHcCCCCcHHHH------------HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHH
Confidence 999999999999 999999999998 5789999999999999999999999998776643 44444
Q ss_pred HHHHhcCCCCCc------HHHHHHHHHHHHcCC
Q 003016 420 EKIKSLRHSKPL------EITFTGLIISSMDGG 446 (857)
Q Consensus 420 ~~m~~~~g~~pd------~~t~~~ll~a~~~~g 446 (857)
+++. .+..|+ ..|...|.+.|++.+
T Consensus 256 rkv~--P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 256 HKVK--PTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp GGGC--CCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHhC--cccCCCCCCcccccchHHHHHHHccCC
Confidence 4452 455554 556677777787655
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.66 E-value=9.3e-15 Score=160.51 Aligned_cols=311 Identities=10% Similarity=0.026 Sum_probs=220.2
Q ss_pred hcCCHHHHHH-HHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 003016 202 DKGSWRQAMS-VLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL 280 (857)
Q Consensus 202 ~~g~~~~A~~-l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~ 280 (857)
..|+++.|.. .+...+.........+...+..+...|.+.|++++|...|+++.+. .+.+..+|..+..+|...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCH
Confidence 3467788887 7776554433222223456778888888999999999999998873 234678888888899999999
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM---E 357 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll---~ 357 (857)
++|...|+++.... +.+..+|..+...+...|++++|...++.+.+.. |+.......+ .
T Consensus 115 ~~A~~~~~~al~~~----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 176 (368)
T 1fch_A 115 LLAISALRRCLELK----------------PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGA 176 (368)
T ss_dssp HHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC------
T ss_pred HHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHh
Confidence 99999999887753 4477888888888999999999999999888754 3222110000 0
Q ss_pred -HH-HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH
Q 003016 358 -SY-RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-TASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT 434 (857)
Q Consensus 358 -~~-~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 434 (857)
.. ....+. .+..+...|++++|...|+++.+.+... +..+|..+...|.+.|++++|+..|++.... .+.+..+
T Consensus 177 ~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~ 253 (368)
T 1fch_A 177 GGAGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLL 253 (368)
T ss_dssp ---------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhhcccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHH
Confidence 00 000001 2333448899999999999998765432 5788999999999999999999999998873 2345678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH
Q 003016 435 FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE 514 (857)
Q Consensus 435 ~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~ 514 (857)
+..+...|...|++++|...|+.+.+..+.+..+|..+...|.+.|++++|...|+++.......... .........
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~ 330 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP---RGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------CCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc---cccccchhh
Confidence 99999999999999999999999988556678999999999999999999999999988754000000 000000014
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.+|..+..+|...|+.++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 677777777888888777777665
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.64 E-value=1.3e-13 Score=148.35 Aligned_cols=294 Identities=9% Similarity=-0.007 Sum_probs=235.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
..+...+..+...+...|+++.|..+++.+++..+ .+..++..++..+.+.|++++|..+|+++.+. .+.+...
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 92 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP----FHASCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVS 92 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHH
Confidence 45566777888888888999999999999987533 24556777888889999999999999999874 2346788
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 267 YHSVAVTLGQVG-LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 267 ~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
|..+...+...| ++++|...|++..... +.+...|..+...+...|++++|...++.+.+...
T Consensus 93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 156 (330)
T 3hym_B 93 WFAVGCYYLMVGHKNEHARRYLSKATTLE----------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156 (330)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHTTC----------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhC----------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc
Confidence 999999999999 9999999999998753 44677899999999999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 346 KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 346 ~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
. +...+ ..+...|...|++++|...|++..+... .+..+|..+...|...|++++|...|++....
T Consensus 157 ~-~~~~~------------~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 157 G-CHLPM------------LYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp T-CSHHH------------HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c-cHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 22333 5688899999999999999999887653 35678999999999999999999999988762
Q ss_pred CC-------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003016 426 RH-------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSS 498 (857)
Q Consensus 426 ~g-------~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~ 498 (857)
.. ...+..++..+...|...|++++|...|+...+..+.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--- 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT---
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc---
Confidence 10 13345688899999999999999999999998755567889999999999999999999999998764
Q ss_pred CccccCCCCCCCCC-CHhHhhhhHHHHH-hcCCHH
Q 003016 499 GYTFLSGDGAPLKP-DEYTYSSMLEASA-TAHQWE 531 (857)
Q Consensus 499 ~~~~~~~~~~~~~p-d~~t~~~ll~a~~-~~g~~~ 531 (857)
.| +...+..+..++. ..|+.+
T Consensus 300 ------------~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 300 ------------RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp ------------CSCCHHHHHHHHHHHHTTTTC--
T ss_pred ------------CCCchHHHHHHHHHHHHHhCchh
Confidence 36 4556666666663 345443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=7.1e-11 Score=135.64 Aligned_cols=364 Identities=10% Similarity=-0.019 Sum_probs=283.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH----cCChhH
Q 003016 175 WKFVRIMNQSGLMFTEGQMLKLLKGLGD----KGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK----AGRPHE 246 (857)
Q Consensus 175 ~~l~~~M~~~g~~p~~~t~~~ll~a~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k----~g~~~~ 246 (857)
+..+....+.| +...+..+-..|.. .++++.|...|....+. .+...+..|-..|.. .+++++
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ------GYTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC------CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34444444444 56666666666766 78999999999888764 266788888888888 889999
Q ss_pred HHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHH
Q 003016 247 ALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLN 322 (857)
Q Consensus 247 A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~ 322 (857)
|...|++..+. -+...+..|-..|.. .+++++|...|++....| +...+..+-.
T Consensus 98 A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------------------~~~a~~~Lg~ 155 (490)
T 2xm6_A 98 AVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------------------RDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------------------CHHHHHHHHH
Confidence 99999998874 477888888888887 789999999999887654 4566777777
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCC
Q 003016 323 ACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE----EGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 323 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k----~g~~~~A~~lf~~m~~~~~~~ 394 (857)
.|.. .+++++|.+.|+...+.| +...+ ..|..+|.. .++.++|...|++..+.+
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~------------~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 217 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC------------NQLGYMYSRGLGVERNDAISAQWYRKSATSG--- 217 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH------------HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---
Confidence 7776 788999999999988875 44444 677778887 899999999999888765
Q ss_pred CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCH
Q 003016 395 TASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 395 d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~if~~m~~~~~p~~ 466 (857)
+...+..+...|.. .+++++|...|++... .+ +...+..+-..|.. .++.++|...|+...+. -+.
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 45567777777776 7889999999998876 32 34555666666666 78999999999988763 356
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC---CHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRN-----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH---QWEYFEYVYK 538 (857)
Q Consensus 467 ~~~~~li~~~~~~-----g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g---~~~~a~~l~~ 538 (857)
..+..+-..|... ++.++|...|++..+.+ +...+..+-..|...| +.++|.+.|+
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----------------DATAQANLGAIYFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 7778888888887 89999999999988765 3345666666666655 7889999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Q 003016 539 GMALSGCQLDQTKHAWLLVEASR----AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAM 610 (857)
Q Consensus 539 ~m~~~g~~pd~~t~~~Ll~~~~~----~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M 610 (857)
+..+.| +...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..|.. .+++++|...|++.
T Consensus 356 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 356 KAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 988864 56777788888887 789999999999988875 56777888888887 79999999999997
Q ss_pred hhCCC
Q 003016 611 AYAPF 615 (857)
Q Consensus 611 ~~~~~ 615 (857)
...+.
T Consensus 430 ~~~~~ 434 (490)
T 2xm6_A 430 STNDM 434 (490)
T ss_dssp HHHHC
T ss_pred HHCCC
Confidence 76553
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=1.1e-11 Score=143.86 Aligned_cols=415 Identities=9% Similarity=-0.002 Sum_probs=296.9
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHH
Q 003016 152 RSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVY 231 (857)
Q Consensus 152 ~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~ 231 (857)
..+...|..++. +.+.|.+++|..+|+.+.+.- +-+...|..++..+.+.|+++.|..+|+.++.. .|++..|
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~-----~p~~~lw 82 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK-----VLHIDLW 82 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT-----CCCHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCChHHH
Confidence 346677777777 467899999999999998763 446668999999999999999999999999763 2577788
Q ss_pred HHHHHH-HHHcCChhHHHH----HHHHhHHcCCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHcCCCh
Q 003016 232 TKLLAI-LGKAGRPHEALR----IFNLMLEDCNLYP-DIAAYHSVAVTLGQ---------VGLLKELVKLIERMRQKPSK 296 (857)
Q Consensus 232 n~Li~~-y~k~g~~~~A~~----vf~~m~~~~gi~p-d~~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~ 296 (857)
..++.. +...|+++.|++ +|+......|..| +...|...+....+ .|+++.|..+|++..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P-- 160 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP-- 160 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC--
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch--
Confidence 887753 345688887765 7777766556554 56788888876654 688999999999998743
Q ss_pred hhhhhhhhcCCCCCCCCHHHHHHHHHHH-------------HhcCChHHHHHHHHHHH------HcC---CCCCHH-HHH
Q 003016 297 RIKNMHRKNWDPVLEPDLVVYNAVLNAC-------------VPSHQWKGVFWVFKQLR------KSG---LKPSAA-TYG 353 (857)
Q Consensus 297 ~l~~m~~k~f~~~~~pd~~t~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~pd~~-t~~ 353 (857)
..+....|....... .+.+++..|..++.++. +.. +.|+.. .+.
T Consensus 161 -------------~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 161 -------------MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred -------------hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 222233443322211 13456777777777632 221 244421 000
Q ss_pred HHHHHHHHhHHHHHHHHHHHc----CCH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-------CCCHH-----
Q 003016 354 LAMESYRRCLLKVLVRAFWEE----GKI----NEAVAAVRNMEQRGVVGTASVYYELACCLCN-------NGRWQ----- 413 (857)
Q Consensus 354 ~ll~~~~~~~~~~Li~~y~k~----g~~----~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~-------~g~~~----- 413 (857)
.. ...|...+...... ++. ..|..+|++..... .-+...|..++..+.+ .|+++
T Consensus 228 ~~-----~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 228 QQ-----VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp HH-----HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HH-----HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 00 01234444433322 222 47778888887653 2356778888888876 79987
Q ss_pred --HHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 003016 414 --DAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNI-GTVNAMLKVYSRNDMFSKAKELF 489 (857)
Q Consensus 414 --~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~-~~~~~li~~~~~~g~~~~A~~lf 489 (857)
+|..+|++... ...| +...+..+...+.+.|++++|..+|+.+.+..+.+. ..|..++..+.+.|++++|.++|
T Consensus 302 ~~~A~~~~~~Al~--~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 302 SDEAANIYERAIS--TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHTT--TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999865 2345 477889999999999999999999999988433343 58999999999999999999999
Q ss_pred HHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003016 490 EETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLE-ASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL 567 (857)
Q Consensus 490 ~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~-a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~ 567 (857)
++..... |+ ...|..... .+...|+.+.|..+|+..++.. +-+...+..++..+.+.|+.++
T Consensus 380 ~~Al~~~---------------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 380 KKAREDA---------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHTCT---------------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHHhcc---------------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 9998744 32 222222222 2345899999999999988742 2357788899999999999999
Q ss_pred HHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 568 LEHAFDSLLEAG-EIP--HPLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 568 A~~~~~~m~~~g-i~p--~~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
|..+|+.....+ ..| ....|...+......|+.+.+..+.+++..
T Consensus 444 Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998863 334 255888888888889999999999988753
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=1.1e-15 Score=168.09 Aligned_cols=349 Identities=13% Similarity=0.120 Sum_probs=127.7
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK 281 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~ 281 (857)
+.|++++|.+.++.+ ++..+|+.|..++.+.|++++|.+.|.+. +|..+|..++.++...|+++
T Consensus 15 ~~~~ld~A~~fae~~---------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHH
Confidence 556677777776655 12347777777777777777777777442 45557777777777777777
Q ss_pred HHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003016 282 ELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRR 361 (857)
Q Consensus 282 ~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 361 (857)
+|...++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..++
T Consensus 79 eAi~yl~~ark~-----------------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~--------- 125 (449)
T 1b89_A 79 ELVKYLQMARKK-----------------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHI--------- 125 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT-------CC--------------
T ss_pred HHHHHHHHHHHh-----------------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHH---------
Confidence 777755554442 3445666677777777777777666663 2555444
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Q 003016 362 CLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS 441 (857)
Q Consensus 362 ~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a 441 (857)
+.+.+.|...|++++|...|..+. .|..++.++.+.|++++|++.+.++ .+..+|..++.+
T Consensus 126 ---~~IGd~~~~~g~yeeA~~~Y~~a~---------n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~a 186 (449)
T 1b89_A 126 ---QQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFA 186 (449)
T ss_dssp --------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHhh---------hHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHH
Confidence 667777777777777777777662 2777777777777777777777665 245677777777
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhH
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSML 521 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll 521 (857)
|...|+++.|......+. .+......++..|.+.|++++|..+++...... .-....|+-+-
T Consensus 187 Cv~~~ef~lA~~~~l~L~----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--------------~ah~~~ftel~ 248 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV----VHADELEELINYYQDRGYFEELITMLEAALGLE--------------RAHMGMFTELA 248 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--------------TCCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHH----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--------------HHHHHHHHHHH
Confidence 777777777744443322 333334456677777777777777777665321 11233454444
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 003016 522 EASATA--HQWEYFEYVYKGMALSGCQL------DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEMLI 592 (857)
Q Consensus 522 ~a~~~~--g~~~~a~~l~~~m~~~g~~p------d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~li~ 592 (857)
-+|++- +++.+.+++|.. +.+++| +...|.-++..|.+.+.++.|.. .|.++ ...-+...|- .
T Consensus 249 il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~---~ 320 (449)
T 1b89_A 249 ILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFK---D 320 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHH---H
T ss_pred HHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHH---H
Confidence 444443 344444444431 112332 23355556666666666665554 34444 2222333333 3
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 593 QAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
...+-.+.+--.+.+.-.. +..|. .++.|+.++...-|...+-++ +.+.|..
T Consensus 321 ~~~kv~n~elyYkai~fyl--~~~p~--~l~~ll~~l~~~ld~~r~v~~---~~~~~~l 372 (449)
T 1b89_A 321 IITKVANVELYYRAIQFYL--EFKPL--LLNDLLMVLSPRLDHTRAVNY---FSKVKQL 372 (449)
T ss_dssp HHHHCSSTHHHHHHHHHHH--HHCGG--GHHHHHHHHGGGCCHHHHHHH---HHHTTCT
T ss_pred HHhchhHHHHHHHHHHHHH--hcCHH--HHHHHHHHHHhccCcHHHHHH---HHHcCCc
Confidence 3334444443333333222 22232 467777777666665544444 4555443
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=4.2e-14 Score=155.55 Aligned_cols=287 Identities=8% Similarity=-0.023 Sum_probs=210.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
+...|..+...|.+.|++++|...|+++... .+.+..+|..+...|...|++++|...|+++....
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ------------ 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 4456888888899999999999999998874 23468889999999999999999999999987752
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
+.+..+|..+...|...|++++|...|+++.+.. |+.......+. .....+..+...|.+.|++++|..+|++
T Consensus 130 ----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (365)
T 4eqf_A 130 ----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-GSPGLTRRMSKSPVDSSVLEGVKELYLE 202 (365)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------CCHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-cchHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4468889999999999999999999999988753 33221100000 0001125568899999999999999999
Q ss_pred HhhcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 387 MEQRGVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 387 m~~~~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
+.+.+.. .+..+|..+...|.+.|++++|+..|++.... .+.+..++..+..+|.+.|++++|...|+.+.+..+.+
T Consensus 203 al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 203 AAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 9887543 26788999999999999999999999999873 34467889999999999999999999999998855667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
..+|..+...|.+.|++++|...|+++.......... ........+...|..+..++...|+.+.+..+..
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ--QQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCC--cccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8999999999999999999999999988754000000 0000000124567777777777777777666554
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.61 E-value=3.2e-13 Score=145.30 Aligned_cols=290 Identities=8% Similarity=-0.042 Sum_probs=237.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 003016 155 AEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKL 234 (857)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~L 234 (857)
......+...+...|.+++|..+|+.+.+.. +.+...+..++..+...|+++.|..+++.+++..+ .+..+|..+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l 96 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP----SNPVSWFAV 96 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT----TSTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc----CCHHHHHHH
Confidence 3445566677778899999999999998765 34455666778888999999999999999987532 367889999
Q ss_pred HHHHHHcC-ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC
Q 003016 235 LAILGKAG-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD 313 (857)
Q Consensus 235 i~~y~k~g-~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd 313 (857)
...|...| ++++|...|++.... .+.+...|..+...+...|++++|...|+++.... +.+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~ 158 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM----------------KGC 158 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT----------------TTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc----------------ccc
Confidence 99999999 999999999999873 23457889999999999999999999999998753 335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG-- 391 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~-- 391 (857)
...+..+...|...|++++|...+++..+.. +.+... +..+...|.+.|++++|...|++..+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFV------------MHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHH------------HHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 6677789999999999999999999998764 223344 3889999999999999999999887542
Q ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 392 ------VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 392 ------~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
...+..+|..+..+|.+.|++++|...|++.... .+.+..++..+...|.+.|++++|...|+...+-.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1334567999999999999999999999999873 23356788899999999999999999999998755667
Q ss_pred HHHHHHHHHHH-HhcCCH
Q 003016 466 IGTVNAMLKVY-SRNDMF 482 (857)
Q Consensus 466 ~~~~~~li~~~-~~~g~~ 482 (857)
...+..+..++ ...|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 88888888887 455554
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.61 E-value=9.1e-14 Score=152.55 Aligned_cols=302 Identities=10% Similarity=-0.008 Sum_probs=167.7
Q ss_pred cCChhHHHH-HHHHhHHcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH
Q 003016 241 AGRPHEALR-IFNLMLEDCNLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY 317 (857)
Q Consensus 241 ~g~~~~A~~-vf~~m~~~~gi~p--d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~ 317 (857)
.|+++.|.. .|++......-.| +...|..+...+.+.|++++|...|+++.+.. +.+..+|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~ 101 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD----------------PKHMEAW 101 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------TTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------CCCHHHH
Confidence 356666666 6654433111111 23456666677777777777777777776642 3456666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHH
Q 003016 318 NAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 318 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~ 397 (857)
..+..++...|++++|...|+.+.+... .+..++ ..+...|...|++++|...|+++........ .
T Consensus 102 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 167 (368)
T 1fch_A 102 QYLGTTQAENEQELLAISALRRCLELKP-DNQTAL------------MALAVSFTNESLQRQACEILRDWLRYTPAYA-H 167 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-G
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-H
Confidence 6677777777777777777777666531 133332 5666666677777777777766665432211 0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC--CHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP--NIGTVNAMLKV 475 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p--~~~~~~~li~~ 475 (857)
.+..+ +... ....+. ..+. .+..+...|++++|...|+.+.+..+. +..+|..+...
T Consensus 168 ~~~~~-------~~~~------------~~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~ 226 (368)
T 1fch_A 168 LVTPA-------EEGA------------GGAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 226 (368)
T ss_dssp GCC-----------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred HHHHH-------HHHh------------hhhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH
Confidence 11100 0000 000000 0000 122222566666666666666652222 46667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
|.+.|++++|...|+++.... | +..+|..+...+...|++++|...|+++.+.. +.+..++..
T Consensus 227 ~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~ 290 (368)
T 1fch_A 227 FNLSGEYDKAVDCFTAALSVR---------------PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYN 290 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 777777777777777766643 3 34566666667777777777777777766532 234556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC--C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAG--E--------IPHPLFFTEMLIQAIVQSNYEKAVALINA 609 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~g--i--------~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 609 (857)
+...|.+.|++++|...|+.+.+.. . .....+|..+..++...|++++|..++++
T Consensus 291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7777777777777777777665531 0 01256777777777777777777776653
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.59 E-value=5.6e-14 Score=154.50 Aligned_cols=354 Identities=15% Similarity=0.201 Sum_probs=169.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 003016 157 AIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (857)
Q Consensus 157 ~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~ 236 (857)
..+.|++ +.|..++|.++++++ +++.+|..+..++.+.|++++|...|... +|...|..++.
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika---------~D~~~y~~V~~ 69 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------DDPSSYMEVVQ 69 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC---------CCHHHHHHHHH
Confidence 3344443 456689999999988 33459999999999999999999999542 47779999999
Q ss_pred HHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHH
Q 003016 237 ILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVV 316 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t 316 (857)
.+...|++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------~pn~~a 124 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----------------------GPNNAH 124 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT----------------------CC----
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc----------------------CCcHHH
Confidence 999999999999977777663 4678899999999999999999887763 366779
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH
Q 003016 317 YNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA 396 (857)
Q Consensus 317 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~ 396 (857)
|+.+...|...|.+++|..+|..+. . |..|++++.+.|++++|.+.+.++ .++
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a~---------n------------~~~LA~~L~~Lg~yq~AVea~~KA------~~~ 177 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNVS---------N------------FGRLASTLVHLGEYQAAVDGARKA------NST 177 (449)
T ss_dssp ------------CTTTHHHHHHHTT---------C------------HHHHHHHHHTTTCHHHHHHHHHHH------TCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhh---------h------------HHHHHHHHHHhccHHHHHHHHHHc------CCc
Confidence 9999999999999999999999771 2 489999999999999999999998 367
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
.+|..++.+|...|+++.|......+ ...|+. ...++..|.+.|.+++|..+++.....-+.....|+-|--+|
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~ 251 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHI----VVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 251 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88999999999999999996544332 234444 457899999999999999999998874456788899888888
Q ss_pred Hhc--CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC------CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 003016 477 SRN--DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP------DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD 548 (857)
Q Consensus 477 ~~~--g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p------d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd 548 (857)
++- ++..+.+++|..-. + +.| +...|.-+.--|.+.+.++.|.. .|.+ ..|+
T Consensus 252 ~ky~p~k~~ehl~~~~~~i--n-------------i~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~--h~~~ 311 (449)
T 1b89_A 252 SKFKPQKMREHLELFWSRV--N-------------IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMN--HPTD 311 (449)
T ss_dssp HTTCHHHHHHHHHHHSTTS--C-------------HHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHH--STTT
T ss_pred HhcCHHHHHHHHHHHHHHh--c-------------CcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHh--CChh
Confidence 875 45666666665321 1 333 45678888888999999998875 3433 2334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 549 QTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 549 ~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
..-.........+..+.+--.+...-..+ ..| ...+-|+.++...=+..+++.+|+..
T Consensus 312 a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 312 AWKEGQFKDIITKVANVELYYRAIQFYLE--FKP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp TCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 33333444445566665544444433332 223 34666777776666777777777665
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=1.6e-10 Score=132.60 Aligned_cols=354 Identities=11% Similarity=-0.047 Sum_probs=291.9
Q ss_pred CHHHHHHHHHHHHH----cCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhh
Q 003016 227 SRFVYTKLLAILGK----AGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRI 298 (857)
Q Consensus 227 ~~~~~n~Li~~y~k----~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l 298 (857)
+...+..|-..|.. .++++.|...|.+..+. -+...+..|-..|.. .+++++|...|++....|
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 67788888888888 89999999999999884 578889999999998 899999999999997654
Q ss_pred hhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH-
Q 003016 299 KNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE- 373 (857)
Q Consensus 299 ~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k- 373 (857)
+...+..+-..|.. .+++++|...|+...+.| +...+ ..|-.+|..
T Consensus 110 --------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~------------~~Lg~~y~~g 160 (490)
T 2xm6_A 110 --------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ------------QSMGDAYFEG 160 (490)
T ss_dssp --------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------HHHHHHHHHT
T ss_pred --------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH------------HHHHHHHHcC
Confidence 56677778888887 789999999999998876 33433 667778887
Q ss_pred ---cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc--
Q 003016 374 ---EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-- 444 (857)
Q Consensus 374 ---~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-- 444 (857)
.++.++|...|++..+.+ +...+..+...|.. .++.++|+..|++... .+ +...+..+-..|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCC
Confidence 889999999999998875 56678888888888 8999999999999887 33 55677777777775
Q ss_pred --CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh
Q 003016 445 --GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518 (857)
Q Consensus 445 --~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~ 518 (857)
.++.++|..+|+...+. .+...+..+-..|.. .++.++|.+.|++..+.| +...+.
T Consensus 234 g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----------------~~~a~~ 295 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----------------NSDGQY 295 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----------------CHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Confidence 88999999999998773 456777788888887 899999999999987655 344666
Q ss_pred hhHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003016 519 SMLEASATA-----HQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG---KCHLLEHAFDSLLEAGEIPHPLFFTEM 590 (857)
Q Consensus 519 ~ll~a~~~~-----g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G---~~~~A~~~~~~m~~~gi~p~~~~~~~l 590 (857)
.+-..|... ++.++|...|++..+.| +...+..+-..|...| +.++|.++|+...+.| ++..+..|
T Consensus 296 ~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~L 369 (490)
T 2xm6_A 296 YLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNL 369 (490)
T ss_dssp HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 677777776 89999999999999875 4566777777777766 7899999999998874 67888888
Q ss_pred HHHHHH----cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhh----ccCHHHHHHHHHHHHhCCCC
Q 003016 591 LIQAIV----QSNYEKAVALINAMAYAPFHITERQWTELFESNED----RISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 591 i~~~~~----~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~----~g~~e~~~~l~~~m~~~g~~ 651 (857)
-..|.. .+++++|+.+|++....+ +...+..|-..+.. .++.+.|...++...+.|..
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 888888 799999999999988765 35566666555555 89999999999999988744
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.58 E-value=2.2e-13 Score=149.68 Aligned_cols=202 Identities=10% Similarity=0.049 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...+.+.|++++|..+|+++.... +.+..+|..+...|...|++++|...|+++.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD----------------PGDAEAWQFLGITQAENENEQAAIVALQRCLE 127 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45568999999999999999999999998753 45788999999999999999999999999988
Q ss_pred cCCCCC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC---------CCHHHHHHHHHHHHHCCCH
Q 003016 343 SGLKPS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVV---------GTASVYYELACCLCNNGRW 412 (857)
Q Consensus 343 ~g~~pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---------~d~~t~~~lI~~~~~~g~~ 412 (857)
.. |+ ..++ ..+...|.+.|++++|...|+++.+.+.. ....++..+...|...|++
T Consensus 128 ~~--p~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 193 (365)
T 4eqf_A 128 LQ--PNNLKAL------------MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVL 193 (365)
T ss_dssp HC--TTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHH
T ss_pred cC--CCCHHHH------------HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhH
Confidence 64 43 4444 88999999999999999999998764311 0011223345555556666
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 413 QDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEET 492 (857)
Q Consensus 413 ~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M 492 (857)
++|...|+++.......++..++..+...|...|++++|...|+...+..+.+..+|+.+..+|.+.|++++|+..|+++
T Consensus 194 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 194 EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666655522111134444555555555555555555555544433334445555555555555555555555554
Q ss_pred HH
Q 003016 493 TR 494 (857)
Q Consensus 493 ~~ 494 (857)
..
T Consensus 274 l~ 275 (365)
T 4eqf_A 274 LE 275 (365)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.55 E-value=1.6e-12 Score=138.72 Aligned_cols=253 Identities=11% Similarity=0.075 Sum_probs=182.1
Q ss_pred HHHcCChhHHHHHHHHhHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH
Q 003016 238 LGKAGRPHEALRIFNLMLEDCNLYPDI--AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV 315 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~gi~pd~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~ 315 (857)
....|++..|+..++.... ..|+. .....+..+|...|++++|+..++. . -.|+..
T Consensus 9 ~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~----------------~~~~~~ 66 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S----------------SAPELQ 66 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T----------------SCHHHH
T ss_pred HHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c----------------CChhHH
Confidence 3456888888888776543 22432 3455667888888888888875543 1 356777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT 395 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d 395 (857)
++..+...+...++.++|.+.++++...+..|+...+ +..+...|.+.|++++|.+.|++ ..+
T Consensus 67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~-----------~~~la~~~~~~g~~~~Al~~l~~------~~~ 129 (291)
T 3mkr_A 67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF-----------LLMAASIYFYDQNPDAALRTLHQ------GDS 129 (291)
T ss_dssp HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHH-----------HHHHHHHHHHTTCHHHHHHHHTT------CCS
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHhC------CCC
Confidence 8888888888888888888888888877766765554 36667788888888888888876 345
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH---HHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT---FTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t---~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
...+..++..|.+.|++++|...|+++... .|+... ..+.+..+...|++++|..+|+++.+..+.+...|+.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 667888888888888888888888888773 244321 12233444556888888888888877666778888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHH-HHHHHHHHHHcCCCCCH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEY-FEYVYKGMALSGCQLDQ 549 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~-a~~l~~~m~~~g~~pd~ 549 (857)
..+|.+.|++++|.+.|++..... | +..++..++..+...|+.++ +.++++++.+ +.|+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~---------------p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~ 268 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKD---------------SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSH 268 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCC
Confidence 888888888888888888877754 5 55677777777777887754 5677777765 34543
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.54 E-value=1.5e-12 Score=139.79 Aligned_cols=272 Identities=11% Similarity=0.041 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 230 VYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 230 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.+..+...+...|++++|..+|+++.+. .+.+..+|..+..++...|++++|...|+++....
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------- 85 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------- 85 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 3455566666777777777777776653 22356666677777777777777777777766542
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHH-HhHHHHH-HH-HHHHcCCHHHHHHHHH
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAAT-YGLAMESYR-RCLLKVL-VR-AFWEEGKINEAVAAVR 385 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~~~~-~~~~~~L-i~-~y~k~g~~~~A~~lf~ 385 (857)
+.+..+|..+...+...|++++|...++.+.+.. |+... +..+...+. ......+ .. .|...|++++|...++
T Consensus 86 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 86 -PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 3356666667777777777777777777776543 22211 100000000 0000111 22 3778899999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
++.+.... +..+|..+...|...|++++|...|++.... .+.+..++..+...+...|++++|...|+.+.+..+.+
T Consensus 163 ~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 163 AALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99876533 6778999999999999999999999999873 23457789999999999999999999999998855667
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-------------HhHhhhhHHHHHhcCCHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-------------EYTYSSMLEASATAHQWEY 532 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-------------~~t~~~ll~a~~~~g~~~~ 532 (857)
..+|..+...|.+.|++++|.+.|++..... |+ ..+|..+..++...|+.++
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ---------------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------CccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 8999999999999999999999999988754 43 5677788888888888888
Q ss_pred HHHHHHH
Q 003016 533 FEYVYKG 539 (857)
Q Consensus 533 a~~l~~~ 539 (857)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 8877764
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.53 E-value=2.4e-12 Score=138.22 Aligned_cols=277 Identities=10% Similarity=-0.005 Sum_probs=206.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
.+......+...|++++|..+++.+++.. +.+..+|..+...|.+.|++++|...|+++.+. .+.+..+|..+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 96 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA----PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALA 96 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHHH
Confidence 45556667778888888888888887642 236778888888888888888898888888773 234677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHH-HH-HHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV-LN-ACVPSHQWKGVFWVFKQLRKSGLKPSA 349 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~l-i~-~~~~~g~~~~A~~l~~~m~~~g~~pd~ 349 (857)
..|...|++++|...|+++........ ..+.... ...|+......+ .. .+...|++++|...++++.+.... +.
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 172 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYE-QLGSVNL--QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DA 172 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTT-TC----------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccH-HHHHHHh--HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CH
Confidence 888888999999998888876531000 0000000 000111111111 22 377889999999999999876422 44
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
..+ ..+...|.+.|++++|...|+++.+... .+..+|..+...|...|++++|...|++.... .+
T Consensus 173 ~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~ 237 (327)
T 3cv0_A 173 QLH------------ASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDI--NP 237 (327)
T ss_dssp HHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 444 8899999999999999999999887653 35678999999999999999999999998872 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP------------NIGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p------------~~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
.+..++..+...|...|++++|...|+......+. +..+|..+..+|.+.|++++|..++++..
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45778899999999999999999999998763222 57889999999999999999999987544
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.51 E-value=2.1e-10 Score=139.57 Aligned_cols=265 Identities=13% Similarity=0.097 Sum_probs=184.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
+..+|..+-.++...|++++|...|.+. -|...| ..++..|.+.|++++|.+.+....+..
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say------------~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSY------------MEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence 3567888888888888888888887553 233343 668888888888888888887765544
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
++....+.++.+|++.+++++.. -| .. .++...|..+-..|...|++++|..+|... ..|..+
T Consensus 1165 -~e~~Idt~LafaYAKl~rleele-~f---I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rL 1227 (1630)
T 1xi4_A 1165 -RESYVETELIFALAKTNRLAELE-EF---IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL 1227 (1630)
T ss_pred -ccccccHHHHHHHHhhcCHHHHH-HH---Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHH
Confidence 22222334788888888877533 33 12 245556667888888888888888888875 368888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003016 473 LKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKH 552 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~ 552 (857)
..+|++.|++++|.+.+++. -+..+|..+-.+|...|.+..|...... +..++..+
T Consensus 1228 A~tLvkLge~q~AIEaarKA-------------------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1228 ASTLVHLGEYQAAVDGARKA-------------------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHh-------------------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 88888888888888888765 3457888888888888888887765543 44466667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhhhCCCcc------CHHHHHH
Q 003016 553 AWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQ--SNYEKAVALINAMAYAPFHI------TERQWTE 624 (857)
Q Consensus 553 ~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~--g~~~~A~~l~~~M~~~~~~p------~~~~~~~ 624 (857)
..++..|.+.|.+++|..+++...... .-+...|+.|...+.+. +++.+++++|..-. .+.| +...|..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHH
Confidence 788888888888888888887665433 23455676666666664 66667777666431 2222 2356777
Q ss_pred HHHHhhhccCHHHHHH
Q 003016 625 LFESNEDRISRDKLEK 640 (857)
Q Consensus 625 Ll~a~~~~g~~e~~~~ 640 (857)
+.--+.+.++++.|..
T Consensus 1361 lv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccHHHHHH
Confidence 7777777788777663
No 33
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.49 E-value=2.5e-09 Score=130.26 Aligned_cols=389 Identities=11% Similarity=0.096 Sum_probs=283.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
-++.-....+++|...|.+.+|.++++.++.. ...+..+....|.|+....+. +.....+...+... -+ .
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d---~ 1052 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YD---A 1052 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----cc---H
Confidence 45556677889999999999999999998743 222334667788888777777 55555555555543 22 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKP 347 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 347 (857)
.-+...+...|.+++|..+|++... .....+.++. ..+++++|.++..+..
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~--------------------~~~A~~VLie---~i~nldrAiE~Aervn------ 1103 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV--------------------NTSAVQVLIE---HIGNLDRAYEFAERCN------ 1103 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC--------------------HHHHHHHHHH---HHhhHHHHHHHHHhcC------
Confidence 4477888899999999999998631 1222333433 6788999999888552
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRH 427 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g 427 (857)
+..+ |..+..++.+.|++++|...|.+- -|...|..++.+|.+.|++++|.+.|....+ ..
T Consensus 1104 ~p~v------------WsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~ 1164 (1630)
T 1xi4_A 1104 EPAV------------WSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KA 1164 (1630)
T ss_pred CHHH------------HHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hc
Confidence 2333 488999999999999999999664 3555688899999999999999999987665 22
Q ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCC
Q 003016 428 SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDG 507 (857)
Q Consensus 428 ~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~ 507 (857)
++....+.+..+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1165 --~e~~Idt~LafaYAKl~rleele~fI---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------------- 1221 (1630)
T 1xi4_A 1165 --RESYVETELIFALAKTNRLAELEEFI---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------- 1221 (1630)
T ss_pred --ccccccHHHHHHHHhhcCHHHHHHHH---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------------
Confidence 44444456999999999988644442 2 267778888999999999999999999874
Q ss_pred CCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003016 508 APLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587 (857)
Q Consensus 508 ~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~ 587 (857)
..|..+..++.+.|+++.|.+.+++. .+..+|..+-.+|...|.+..|...... +..++..+
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deL 1283 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 1283 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHH
Confidence 27889999999999999999999875 4668888888899999999999887654 34466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH----HHHH
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAPFHITER-QWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS----NLSR 662 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~-~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~----~~~~ 662 (857)
..++..|.+.|.+++|+.+++.-. +..+... .|+-|-..+.+ -..+...+.++...+++-.|+..... -+..
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~aL--~LeraH~gmftELaiLyaK-y~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSK-FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh--ccChhHhHHHHHHHHHHHh-CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 899999999999999999998765 4444443 44444444443 45666666666666666655422111 1234
Q ss_pred HHHHHhccCchhhhHh
Q 003016 663 ALHALCRSEKERDLSS 678 (857)
Q Consensus 663 ~l~~~~~~~~~~~~~~ 678 (857)
.+.-++..|..+.|..
T Consensus 1361 lv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccHHHHHH
Confidence 4555566677666664
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.45 E-value=1.3e-11 Score=131.65 Aligned_cols=251 Identities=12% Similarity=0.094 Sum_probs=154.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKS--RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~~--~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
-.-..|++..|+...+.... ..|+ ....-.+..+|...|+++.|+..++.. -.|+..++..+...+..
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~-----~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP-----SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC-----CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccc-----CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcC
Confidence 34445666666666654321 1122 123344566777777777777655432 13556666677777777
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
.|+.++|++.++++...+ ..| +...+..+...+.+.|++++|.+.++. ..+...+
T Consensus 78 ~~~~~~A~~~l~~ll~~~---------------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~--- 133 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRS---------------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECM--- 133 (291)
T ss_dssp STTHHHHHHHHHHHHHSC---------------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHH---
T ss_pred CCcHHHHHHHHHHHHhcc---------------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHH---
Confidence 777777777777766543 334 344445555666777777777777665 2333333
Q ss_pred HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH
Q 003016 356 MESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVY---YELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE 432 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~---~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~ 432 (857)
..+...|.+.|+.++|.+.|+++.+.+ |+.... ...+..+...|++++|..+|+++... .+.+.
T Consensus 134 ---------~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~ 200 (291)
T 3mkr_A 134 ---------AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTL 200 (291)
T ss_dssp ---------HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCH
T ss_pred ---------HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcH
Confidence 566677777777777777777776654 332111 11223333457777777777777762 34556
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSK-AKELFEETTRAN 496 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~-A~~lf~~M~~~g 496 (857)
..++.+..++.+.|++++|...|++.....+.+..+++.++..+...|+.++ +.++++++.+..
T Consensus 201 ~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 201 LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 6677777777777777777777777766445567777777777777777765 567777777644
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=2e-10 Score=130.59 Aligned_cols=374 Identities=9% Similarity=-0.022 Sum_probs=208.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----cCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc---C-
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGL-----KDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED---C- 258 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~- 258 (857)
.....|+.+-..+...|+.++|++.|+..++. +.........+|+.+..+|...|++++|...|++..+- .
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34457888888888899999999998877543 11122335678999999999999999999888876541 0
Q ss_pred C-CCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHH---HHhcCCh
Q 003016 259 N-LYP-DIAAYHSVAVTLGQV--GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNA---CVPSHQW 330 (857)
Q Consensus 259 g-i~p-d~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~---~~~~g~~ 330 (857)
+ ..+ ...+|+.+..++... +++++|...|++.... .| +...+..+..+ +...++.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----------------~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----------------KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----------------STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----------------CCCCHHHHHHHHHHHHHhcCchHH
Confidence 1 112 355666666566554 4689999999998764 34 44455544444 3456777
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHhHHHHHHH----HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 003016 331 KGVFWVFKQLRKSGLKPS-AATYGLAMESYRRCLLKVLVR----AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACC 405 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~~~~~Li~----~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~ 405 (857)
++|++.+++..+.. |+ ...+ ..+.. .+...|+.++|.+++++....+. .+..+|..+...
T Consensus 192 ~~al~~~~~al~l~--p~~~~~~------------~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~ 256 (472)
T 4g1t_A 192 QNAIDPLRQAIRLN--PDNQYLK------------VLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKF 256 (472)
T ss_dssp CCTHHHHHHHHHHC--SSCHHHH------------HHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC--CcchHHH------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHH
Confidence 88888888887653 33 3333 33333 33345677889999988776653 356678888899
Q ss_pred HHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc-------------------CCCHHHHHHHHHHHhhCCCCCH
Q 003016 406 LCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-------------------GGHIDDCISIFQHMKDHCEPNI 466 (857)
Q Consensus 406 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-------------------~g~~~~A~~if~~m~~~~~p~~ 466 (857)
|...|++++|+..|.+.... .+-+..++..+-..|.. .+..+.|...|+...+..+.+.
T Consensus 257 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 334 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh
Confidence 99999999999999988762 22234445544444321 1224455555555544333444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH----hhhhHH-HHHhcCCHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT----YSSMLE-ASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t----~~~ll~-a~~~~g~~~~a~~l~~~m~ 541 (857)
.++..+...|.+.|++++|++.|++..... |+... +..+.. .....|+.++|+..|.+..
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEFSKE---------------LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHHhcC---------------CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666666777777777777777666533 32211 111111 2234566677777666666
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCccCHH
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA-PFHITER 620 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~-~~~p~~~ 620 (857)
+ +.|+....... .+.+.++++...+.+ +.+..+|..+-..+...|++++|++.|++.++. +..|+..
T Consensus 400 ~--i~~~~~~~~~~---------~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 400 K--INQKSREKEKM---------KDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp H--SCCCCHHHHHH---------HHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------------
T ss_pred h--cCcccHHHHHH---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 5 33443221111 122333333333321 224456666666666677777777777765442 3344444
Q ss_pred HH
Q 003016 621 QW 622 (857)
Q Consensus 621 ~~ 622 (857)
+|
T Consensus 468 ~~ 469 (472)
T 4g1t_A 468 SW 469 (472)
T ss_dssp --
T ss_pred hc
Confidence 33
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.4e-10 Score=119.62 Aligned_cols=228 Identities=9% Similarity=-0.005 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
...|..+...|...|++++|...|++..+. . .+...|..+..+|...|++++|...|++.......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~----------- 70 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE----------- 70 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-----------
Confidence 457888889999999999999999999885 3 78899999999999999999999999998764300
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 308 PVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 308 ~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
..++ ..+|..+...+...|++++|...|+...+.. |+.. .+.+.|++++|...
T Consensus 71 --~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------------------~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 71 --MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD-------------------ILTKLRNAEKELKK 127 (258)
T ss_dssp --TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH-------------------HHHHHHHHHHHHHH
T ss_pred --cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chhH-------------------HHHHHhHHHHHHHH
Confidence 1122 5789999999999999999999999998853 4433 24456889999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 003016 384 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE 463 (857)
Q Consensus 384 f~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~ 463 (857)
++.+..... .+...|..+...|...|++++|+..|++.... .+.+..++..+...|...|++++|...|+...+..+
T Consensus 128 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 128 AEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 999887642 24567888999999999999999999999873 234677899999999999999999999999988556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 67899999999999999999999999998763
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.2e-10 Score=116.86 Aligned_cols=228 Identities=7% Similarity=0.013 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
...|..+...+...|++++|...|++.... . .+..+|..+..++...|++++|...+....+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~----------------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 67 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL----------------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 567888999999999999999999999874 3 67889999999999999999999999998764
Q ss_pred C--CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 003016 344 G--LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEK 421 (857)
Q Consensus 344 g--~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~ 421 (857)
. ..|+.... ..+|..+...|.+.|++++|...|++..+.. |+. ..+.+.|++++|...++.
T Consensus 68 ~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 68 GREMRADYKVI--------SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp HHHTTCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHH
T ss_pred CcccccchHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHH
Confidence 3 22232111 0124788888999999999999999887754 332 345566788888888888
Q ss_pred HHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 003016 422 IKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 501 (857)
Q Consensus 422 m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~ 501 (857)
+.. ..+.+...+..+...+...|++++|...|+...+..+.+..+|..+...|.+.|++++|...|++.....
T Consensus 131 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----- 203 (258)
T 3uq3_A 131 EAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----- 203 (258)
T ss_dssp HHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----
Confidence 776 1222344566677777777777777777777776445567777777777777777777777777776644
Q ss_pred ccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 502 FLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 502 ~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
| +..+|..+...+...|++++|...+++..+
T Consensus 204 ----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 ----------PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp ----------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4 345666666677777777777777766654
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=2.2e-09 Score=121.96 Aligned_cols=374 Identities=11% Similarity=-0.007 Sum_probs=244.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc----C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLED----C---NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIK 299 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~---gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~ 299 (857)
....||.|-..|...|+.++|++.|++..+- . .-....++|+.+...|...|++++|...+++....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i------ 123 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV------ 123 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------
Confidence 4578999999999999999999999876431 0 11234789999999999999999999999887642
Q ss_pred hhhhhcCCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHH---HHHHc
Q 003016 300 NMHRKNWDPVLEPDLVVYNAVLNACVP--SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVR---AFWEE 374 (857)
Q Consensus 300 ~m~~k~f~~~~~pd~~t~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~---~y~k~ 374 (857)
+++...........+++.+..++.. .+++++|...|++..+. .|+...+ +..+.. .+...
T Consensus 124 --~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~-----------~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 124 --CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEF-----------TSGLAIASYRLDNW 188 (472)
T ss_dssp --HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHH-----------HHHHHHHHHHHHHS
T ss_pred --hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHhcCc
Confidence 2222222122345666666555554 45799999999999875 4554433 123332 34556
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHH
Q 003016 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 450 (857)
++.++|...|++..+.+. .+..++..+...+.. .|++++|...+++.... .+.+..++..+...|...|++++
T Consensus 189 ~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp CCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHH
Confidence 788889999988776553 245556666555554 46788999999988762 34456778889999999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCC
Q 003016 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRN-------------------DMFSKAKELFEETTRANSSGYTFLSGDGAPLK 511 (857)
Q Consensus 451 A~~if~~m~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~ 511 (857)
|...|+...+..+.+..++..+...|... +..++|...|++.....
T Consensus 266 A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------- 330 (472)
T 4g1t_A 266 AIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--------------- 330 (472)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC---------------
Confidence 99999999885556777887777666432 33567888888877754
Q ss_pred C-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003016 512 P-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT--KHAWLLV-EASRAGKCHLLEHAFDSLLEAGEIPHPLFF 587 (857)
Q Consensus 512 p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~--t~~~Ll~-~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~ 587 (857)
| +..++..+...+...|++++|...|++.......+... .+..+.. .+...|+.++|...|+...+. .|+...+
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~ 408 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREK 408 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH
Confidence 4 44567788888999999999999999988754333221 2333322 235678999999999988774 4543332
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
... ...+..+++..... ...+..+|..|-..+...|+.++|.+.++...+.|-.
T Consensus 409 ~~~---------~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHH---------HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 222 23334444443321 1223457777877888889999999999888876543
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.31 E-value=8.9e-10 Score=113.63 Aligned_cols=201 Identities=14% Similarity=-0.019 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+|..+...|...|++++|...|+++.+. .+.+...|..+...|...|++++|.+.|+++....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 345566666666667777777777666652 12356666666666777777777777776665532
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
+.+...|..+...|...|++++|.++++.+.+.+..|+.... +..+...|.+.|++++|...|++.
T Consensus 102 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 102 ---SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRV-----------FENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHH-----------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 335566666666666677777777777666653344443322 355666666677777777777666
Q ss_pred hhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 388 EQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.+... .+..+|..+...|...|++++|...|++... ..+.+...+..+...+...|+.++|.+.++.+.+
T Consensus 168 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 168 LRLNR-NQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55432 2345566666667777777777777766654 2233445566666666666777777766666655
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.31 E-value=6.4e-10 Score=114.73 Aligned_cols=202 Identities=10% Similarity=-0.032 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
...|..+...+...|++++|...|+++.... +.+..+|..+...|...|++++|.+.++++.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 100 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID----------------PSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----------------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5678888899999999999999999998753 457888999999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 344 GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-TASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 344 g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
.. .+...+ ..+...|...|++++|..+|+++...+..| +...|..+...|.+.|++++|...|.+.
T Consensus 101 ~~-~~~~~~------------~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (252)
T 2ho1_A 101 DS-RNARVL------------NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS 167 (252)
T ss_dssp CT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Cc-CcHHHH------------HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 42 234443 788999999999999999999998743444 4567888999999999999999999998
Q ss_pred HhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 423 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
... .+.+..++..+...|...|++++|...|+.+.+..+.+...+..+...|.+.|+.++|.++++++....
T Consensus 168 ~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 168 LRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred Hhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 873 234577889999999999999999999999988666788899999999999999999999999998865
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=7.8e-10 Score=111.31 Aligned_cols=203 Identities=11% Similarity=-0.006 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...+...|++++|.+.|+++... .+.+...|..+...|...|++++|...++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 70 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS----------------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALS 70 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4667888888889999999999999988765 244677888888889999999999999999887
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEE-GKINEAVAAVRNMEQRGVVGT-ASVYYELACCLCNNGRWQDAMLVVE 420 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~-g~~~~A~~lf~~m~~~~~~~d-~~t~~~lI~~~~~~g~~~~A~~l~~ 420 (857)
... .+..++ ..+...|... |++++|...|+++.+.+..|+ ...|..+..+|...|++++|...|.
T Consensus 71 ~~~-~~~~~~------------~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 71 IKP-DSAEIN------------NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp HCT-TCHHHH------------HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCC-CChHHH------------HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 233343 7788889999 999999999999887333333 5678888899999999999999999
Q ss_pred HHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 421 KIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCE-PNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 421 ~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~-p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
++... .+.+...+..+...+.+.|++++|...++.+.+..+ .+...+..+...+...|+.++|..+++.+....
T Consensus 138 ~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 138 RSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 88772 233467788888899999999999999999887545 678888888888999999999999999988754
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.29 E-value=1.2e-09 Score=109.90 Aligned_cols=203 Identities=10% Similarity=-0.082 Sum_probs=111.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
+..+|..+...|...|++++|...|+.+.+. .+.+...|..+...|...|++++|...|+++....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------ 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------ 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------------
Confidence 3445555555666666666666666655542 12335555666666666666666666666655431
Q ss_pred CCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPS-HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+.+..+|..+...+... |++++|...++.+.+.+..|+.... +..+...|.+.|++++|...|+
T Consensus 73 ----~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~A~~~~~ 137 (225)
T 2vq2_A 73 ----PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA-----------NLNKGICSAKQGQFGLAEAYLK 137 (225)
T ss_dssp ----TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Confidence 23455555555666666 6666666666666553233332221 2555556666666666666666
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
++.+... .+...|..+...|.+.|++++|...|++.... ....+...+..+...+...|+.+.+..+++.+..
T Consensus 138 ~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 138 RSLAAQP-QFPPAFKELARTKMLAGQLGDADYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6554432 13445556666666666666666666665541 1113344455555555666666666666666554
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=9e-08 Score=112.92 Aligned_cols=454 Identities=8% Similarity=-0.019 Sum_probs=299.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC---hhHHHHH
Q 003016 174 NWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR---PHEALRI 250 (857)
Q Consensus 174 A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~---~~~A~~v 250 (857)
.+..|++-.... +-|..+|..++..+.+.+.++.++.+|+.++.. ++.+...|...+..-.+.|. ++.+..+
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~----fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR----FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344444444444 468889999999999999999999999999875 44478899999999999999 9999999
Q ss_pred HHHhHHcCCCCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHcC-CChhhhhhhhhcCCCCC-CC-CHHHHHH
Q 003016 251 FNLMLEDCNLYPDIAAYHSVAVTLGQVGLL--------KELVKLIERMRQK-PSKRIKNMHRKNWDPVL-EP-DLVVYNA 319 (857)
Q Consensus 251 f~~m~~~~gi~pd~~t~~~li~~~~~~g~~--------~~A~~l~~~m~~~-g~~~l~~m~~k~f~~~~-~p-d~~t~~~ 319 (857)
|++........|++..|..-+.-..+.++. +.+.++|+..... | . .+ +...|..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG---------------~~d~~s~~iW~~ 190 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCA---------------IFEPKSIQFWNE 190 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTT---------------TTCSSCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC---------------cccccchHHHHH
Confidence 999987422248999999888766655543 3345777775542 3 3 34 4567887
Q ss_pred HHHHHH---------hcCChHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 320 VLNACV---------PSHQWKGVFWVFKQLRKSGLKPSAATYGLA---MESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 320 li~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l---l~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+.-.. ..++++.+..+|...+......-..+|... .......+...++.- ....++.|...+.++
T Consensus 191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e--~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGE--LSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHH--hhHHHHHHHHHHHHH
Confidence 776543 234577889999998853221112222110 000000000011111 112344556666553
Q ss_pred hh--cCC---C------------C-----C---HHHHHHHHHHHHHCC-------CHHHHHHHHHHHHhcCCCCCcHHHH
Q 003016 388 EQ--RGV---V------------G-----T---ASVYYELACCLCNNG-------RWQDAMLVVEKIKSLRHSKPLEITF 435 (857)
Q Consensus 388 ~~--~~~---~------------~-----d---~~t~~~lI~~~~~~g-------~~~~A~~l~~~m~~~~g~~pd~~t~ 435 (857)
.. .++ . | + ...|...|.---.++ ..+.+..+|++.... +.-+...|
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW 346 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIW 346 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHH
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHH
Confidence 21 111 0 1 0 245666665443333 123456778887762 33455667
Q ss_pred HHHHHHHHcCCCHHHHH-HHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-
Q 003016 436 TGLIISSMDGGHIDDCI-SIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD- 513 (857)
Q Consensus 436 ~~ll~a~~~~g~~~~A~-~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd- 513 (857)
.....-+...|+.++|. .+|+.....++.+...|-..+...-+.|++++|.++|+.+..........+. .-.|+
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~----~~~p~~ 422 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALM----EDDPTN 422 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH----HHSTTC
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhh----hccCcc
Confidence 77777777789999996 9999998878888888999999999999999999999998763100000000 00132
Q ss_pred -----------HhHhhhhHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCC
Q 003016 514 -----------EYTYSSMLEASATAHQWEYFEYVYKGMALS-GCQLDQTKHAWLLVEASRA-GKCHLLEHAFDSLLEAGE 580 (857)
Q Consensus 514 -----------~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-g~~pd~~t~~~Ll~~~~~~-G~~~~A~~~~~~m~~~gi 580 (857)
...|...+....+.|+.+.|..+|....+. +. +....|......-.+. ++.+.|..+|+...+. .
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 236888888888889999999999999875 21 1233343333232344 4589999999988876 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCcc--CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 581 IPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHI--TERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 581 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p--~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
.-+...|...+......|+.+.|..+|++.......+ ....|...+.--...|+.+.+.++.+.+.+.- |+.+.+.
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHH
Confidence 3466777888888888899999999999987543322 33688888888889999999999999999774 4444444
Q ss_pred H
Q 003016 659 N 659 (857)
Q Consensus 659 ~ 659 (857)
.
T Consensus 579 ~ 579 (679)
T 4e6h_A 579 E 579 (679)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.23 E-value=7.5e-10 Score=112.25 Aligned_cols=198 Identities=12% Similarity=0.029 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
++...|..+...+.+.|++++|+..|++... --+.+...+..+-..+.+.|++++|...|+...+..+.+...|..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3445678888889999999999999998876 23445677888888899999999999999998875566788899999
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 474 KVYSRN-----------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 474 ~~~~~~-----------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
..|.+. |++++|+..|++..+.. | +...|..+-..+...|++++|...|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 145 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---------------PRYAPLHLQRGLVYALLGERDKAEASLKQAL 145 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---------------cccHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999 99999999999998855 6 45678888889999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+.. .+...+..+...|...|++++|...|+...+.. +.+...+..+...+...|++++|+..+++..
T Consensus 146 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 146 ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 877 788889999999999999999999999988752 2357788888888889999999999988763
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.23 E-value=7.6e-10 Score=112.21 Aligned_cols=200 Identities=13% Similarity=0.052 Sum_probs=150.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHH
Q 003016 187 MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 187 ~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t 266 (857)
+++...+..+...+...|++++|...++.+++.. +.+...|..+...|.+.|++++|...|++..+. -+.+...
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN----PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 4566788888889999999999999999998753 347889999999999999999999999998874 1335788
Q ss_pred HHHHHHHHHhc-----------CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003016 267 YHSVAVTLGQV-----------GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (857)
Q Consensus 267 ~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~ 335 (857)
|..+...+... |++++|...|++..+.. +-+...|..+-..+...|++++|..
T Consensus 76 ~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 76 YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN----------------PRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999 99999999999887742 3367788888888889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHH
Q 003016 336 VFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 336 l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A 415 (857)
.|++..+.. .+...+ ..+...|...|++++|...|++..+.+. .+...+..+...+.+.|++++|
T Consensus 140 ~~~~al~~~--~~~~~~------------~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 140 SLKQALALE--DTPEIR------------SALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHC--CCHHHH------------HHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC-------
T ss_pred HHHHHHhcc--cchHHH------------HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHH
Confidence 999988876 555554 7788888888999999888888877653 2456677788888888888888
Q ss_pred HHHHHHHH
Q 003016 416 MLVVEKIK 423 (857)
Q Consensus 416 ~~l~~~m~ 423 (857)
...|++..
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 88877654
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.22 E-value=3.5e-10 Score=118.11 Aligned_cols=222 Identities=10% Similarity=-0.068 Sum_probs=173.4
Q ss_pred HcCCHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH
Q 003016 373 EEGKINEAVAAVRNMEQRGVV---GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 449 (857)
Q Consensus 373 k~g~~~~A~~lf~~m~~~~~~---~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 449 (857)
..|++++|...|+++.+.... .+..+|..+..+|...|++++|...|++.... .+.+..++..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 457889999999998876421 23567888899999999999999999998873 2345778888999999999999
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCC
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 529 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~ 529 (857)
+|...|+...+..+.+..+|..+...|.+.|++++|...|+++.... |+...+...+..+...|+
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---------------PNDPFRSLWLYLAEQKLD 159 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHhcC
Confidence 99999999988555678889999999999999999999999998855 666555556666677799
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHH
Q 003016 530 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI--P-HPLFFTEMLIQAIVQSNYEKAVAL 606 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~--p-~~~~~~~li~~~~~~g~~~~A~~l 606 (857)
+++|...+....... +++...+ .++..+...+..++|...++...+.... | +...|..+...+...|++++|...
T Consensus 160 ~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998777642 3333333 3666677788888899988887654211 1 156788888889999999999999
Q ss_pred HHHhhhC
Q 003016 607 INAMAYA 613 (857)
Q Consensus 607 ~~~M~~~ 613 (857)
+++....
T Consensus 238 ~~~al~~ 244 (275)
T 1xnf_A 238 FKLAVAN 244 (275)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9998743
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.22 E-value=4.4e-10 Score=117.28 Aligned_cols=221 Identities=9% Similarity=-0.065 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
.+|..+...|...|++++|...|++..+. .+.+..+|..+...|...|++++|...|++.....
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 107 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-------------- 107 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------------
Confidence 34444444444444444444444444432 11234444444444444555555555544444321
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.+..+|..+...+...|++++|...|+.+.+.. |+.... ...+..+...|+.++|...|++..
T Consensus 108 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 108 --PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFR------------SLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp --TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH------------HHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHH------------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2233444444444445555555555555444432 222211 122222233345555555554443
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-----EITFTGLIISSMDGGHIDDCISIFQHMKDHCE 463 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~ 463 (857)
.... ++...|. ++..+...++.++|+..+..... ..|+ ..++..+...|.+.|++++|...|+......+
T Consensus 172 ~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 3221 1111122 33444444444555555544432 1111 23445555555555666666655555554211
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003016 464 PNIGTVNAMLKVYSRNDMFSKAKELF 489 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~~~A~~lf 489 (857)
.+. .....++...|++++|++-+
T Consensus 247 ~~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTC---HHHHHHHHHHHHHHHC----
T ss_pred hhH---HHHHHHHHHHHHHHhhHHHH
Confidence 122 22233444555555555443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.20 E-value=2.7e-08 Score=104.17 Aligned_cols=224 Identities=10% Similarity=-0.039 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhh
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMH 302 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~ 302 (857)
+..++..+-..|...|++++|...|++..+. -+..++..+...|.. .+++++|...|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 5566667777777777777887777777662 356677777777777 777888888777776542
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH----c
Q 003016 303 RKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE----E 374 (857)
Q Consensus 303 ~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k----~ 374 (857)
+..++..+-..|.. .+++++|...|++..+.+ +...+ ..|-..|.. .
T Consensus 73 ----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~------------~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 73 ----------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGC------------ASLGGIYHDGKVVT 127 (273)
T ss_dssp ----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH------------HHHHHHHHHCSSSC
T ss_pred ----------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHH------------HHHHHHHHcCCCcc
Confidence 56667777777777 778888888887777764 34443 667777777 7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CC
Q 003016 375 GKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GG 446 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g 446 (857)
++.++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+ .+ +...+..+-..|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCc
Confidence 88888888887777665 44556667777777 7788888888887776 32 34566667777777 78
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~~~A~~lf~~M~~~g 496 (857)
++++|...|+...+. .+...+..+..+|.+ .+++++|.+.|++..+.+
T Consensus 201 ~~~~A~~~~~~a~~~--~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888888877663 236677777788887 888888888888888766
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.18 E-value=2.8e-08 Score=104.04 Aligned_cols=223 Identities=8% Similarity=-0.052 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFK 338 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~ 338 (857)
+..++..+...|...|++++|...|++..+.+ +..++..+...|.. .+++++|...|+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 66 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYA 66 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHH
Confidence 45666677777777777777777777766532 34556666666776 777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH----CC
Q 003016 339 QLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWE----EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN----NG 410 (857)
Q Consensus 339 ~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k----~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~----~g 410 (857)
+..+.+ +...+ ..|...|.. .++.++|...|++..+.+ +...+..+...|.. .+
T Consensus 67 ~a~~~~---~~~a~------------~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 67 KACDLN---YSNGC------------HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HHHHTT---CHHHH------------HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCC
T ss_pred HHHHCC---CHHHH------------HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCccc
Confidence 776665 33333 556666666 777777777777766654 45556666666666 67
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc----CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh----cCCH
Q 003016 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD----GGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR----NDMF 482 (857)
Q Consensus 411 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~----~g~~ 482 (857)
++++|+..|++..+ .+ +...+..+-..|.. .++.++|...|+...+. .+...+..+...|.. .+++
T Consensus 129 ~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~ 202 (273)
T 1ouv_A 129 DFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNF 202 (273)
T ss_dssp CHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCH
T ss_pred CHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccH
Confidence 77777777776665 32 33444555555555 66666666666665542 234555556666666 6666
Q ss_pred HHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHh----cCCHHHHHHHHHHHHHc
Q 003016 483 SKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASAT----AHQWEYFEYVYKGMALS 543 (857)
Q Consensus 483 ~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~----~g~~~~a~~l~~~m~~~ 543 (857)
++|+..|++..+.+ | ...+..+-..|.. .++.++|...|++..+.
T Consensus 203 ~~A~~~~~~a~~~~---------------~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 203 KEALARYSKACELE---------------N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHHHHHHHHTT---------------C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---------------C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 66666666665543 2 3344444445555 55555555555555543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.18 E-value=1.6e-09 Score=110.66 Aligned_cols=202 Identities=11% Similarity=0.106 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
...+|..+...+...|++++|..+|+++.... +.+...|..+...+...|++++|...++.+.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN----------------KEDAIPYINFANLLSSVNELERALAFYDKALE 85 (243)
T ss_dssp --------------------CCTTHHHHHTTC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC----------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666667777777777777777776642 34566777777777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
... .+...+ ..+...|...|++++|...|+++.+.+. .+...|..+...|.+.|++++|...++++
T Consensus 86 ~~~-~~~~~~------------~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 86 LDS-SAATAY------------YGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HCT-TCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCC-cchHHH------------HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 531 133333 6677777777777777777777766542 24556777777788888888888888877
Q ss_pred HhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 423 KSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 423 ~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
... .+.+...+..+...+.+.|++++|...|+.+....+.+..+|..+...|.+.|++++|.+.|+++....
T Consensus 152 ~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 152 VEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 662 233556677777778888888888888888776555667788888888888888888888888887754
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.17 E-value=1.5e-09 Score=110.95 Aligned_cols=198 Identities=13% Similarity=0.166 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
..|..+...|...|++++|...|+++.+. .+.+...|..+...|...|++++|...|+++....
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp ------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 34444455555555555555555555441 12234555555555555555555555555554431
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.+..+|..+...+...|++++|.+.++++.+... .+...+ ..+...|.+.|++++|...++++.
T Consensus 88 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~------------~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 88 --SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLF------------YMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHH------------HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHH------------HHHHHHHHHhccHHHHHHHHHHHH
Confidence 22444555555555555555555555555544321 122222 445555555555555555555554
Q ss_pred hcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 389 QRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 389 ~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
+... .+...|..+...|.+.|++++|...|++.... .+.+..++..+...|...|++++|...|+.+.+
T Consensus 153 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 153 ELNE-NDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 4322 23444555555555555555555555555441 122344555555555555666666665555554
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.16 E-value=3.8e-09 Score=110.15 Aligned_cols=244 Identities=9% Similarity=-0.011 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC--HHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD--IAAYHSV 270 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd--~~t~~~l 270 (857)
+......+...|+++.|...++.+++..+. +..++..+...|...|++++|...|++..+. +-.|+ ..+|..+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN----SPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYY 80 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC----CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHH
Confidence 334445556666666666666666654221 3345666666666666666666666666652 21111 2346666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
...|...|++++|...|++..... +.+..+|..+...|...|++++|...|++..+. .|+..
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~ 142 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD----------------TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDP 142 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC----------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcH
Confidence 666666666666666666665532 234456666666666666666666666666554 23222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCC
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR---WQDAMLVVEKIKSLRH 427 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~---~~~A~~l~~~m~~~~g 427 (857)
.. |..+...+...+++++|...|++..+.... +...|..+..++...|+ +++|...|++......
T Consensus 143 ~~-----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 210 (272)
T 3u4t_A 143 KV-----------FYELGQAYYYNKEYVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210 (272)
T ss_dssp HH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHG
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHh
Confidence 21 134441222334666666666666554322 24445555666666665 5666666666554221
Q ss_pred CCCc------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH
Q 003016 428 SKPL------EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA 471 (857)
Q Consensus 428 ~~pd------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~ 471 (857)
-.|+ ..+|..+-..|...|++++|...|+...+-.+.+...+..
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 211 PGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp GGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 2222 1345556666666677777776666666533334444433
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.16 E-value=1.7e-09 Score=119.55 Aligned_cols=286 Identities=10% Similarity=-0.014 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhh
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-----IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKN 300 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~ 300 (857)
.....+..+-..+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|...|++.....
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------ 77 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQV---GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------ 77 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH------
Confidence 35666777778888889999999999888774 233 3578888888999999999999888765421
Q ss_pred hhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC--
Q 003016 301 MHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGK-- 376 (857)
Q Consensus 301 m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~-- 376 (857)
++. ...| ...+|..+...|...|++++|...+.+..+... .++.... ..++..+...|...|+
T Consensus 78 --~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 78 --RTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE--------ARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp --HHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH--------HHHHHHHHHHHHHHHHTC
T ss_pred --Hhc---cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccch--------HHHHHHHHHHHHHcCCcc
Confidence 000 0112 255677888889999999999999988765311 0121111 1124788889999999
Q ss_pred ------------------HHHHHHHHHHHhhc----CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc--
Q 003016 377 ------------------INEAVAAVRNMEQR----GVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-- 431 (857)
Q Consensus 377 ------------------~~~A~~lf~~m~~~----~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-- 431 (857)
+++|...+++.... +.. ....+|..+...|...|++++|...|++......-.++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 99999888875432 111 12346777888888899999999888877652111122
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc
Q 003016 432 --EITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPN----IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL 503 (857)
Q Consensus 432 --~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~ 503 (857)
..++..+...|...|++++|...++....- -.++ ..++..+...|.+.|++++|...|++.......
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 299 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----- 299 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----
Confidence 235677777788888888888888776541 1111 456677777778888888888887776553200
Q ss_pred CCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 504 SGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 504 ~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.+..+ ...++..+...|...|++++|...+++..+
T Consensus 300 ----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 ----LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00001 133455555666666666666666666543
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.15 E-value=6.5e-09 Score=108.30 Aligned_cols=160 Identities=11% Similarity=0.068 Sum_probs=77.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--CCC
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA-TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV--VGT 395 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~--~~d 395 (857)
.....+...|++++|...|+...+.. |+.. .+ ..+...|...|++++|...|++..+... ...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~------------~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIY------------NRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTH------------HHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 34444555666666666666655432 2211 22 4455555566666666666655554221 111
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...|...|++++|+..|++..... +.+..++..+...|...|++++|...|+...+..+.+...|..+...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 151 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence 2235555555555555555555555555411 12233455555555555555555555555544333344444444412
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~ 494 (857)
+...+++++|.+.|++..+
T Consensus 152 ~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2222355555555555554
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.14 E-value=2.3e-09 Score=118.62 Aligned_cols=282 Identities=13% Similarity=0.013 Sum_probs=174.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHH
Q 003016 261 YPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVPSHQWKGVFWV 336 (857)
Q Consensus 261 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~~g~~~~A~~l 336 (857)
.+....+......+...|++++|...|++..... +.+ ..+|..+...|...|++++|...
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 69 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG----------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC----------------cccHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4567778888889999999999999999998753 223 35788888899999999999999
Q ss_pred HHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCC----HHHHHHHHHHHHHCC
Q 003016 337 FKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGT----ASVYYELACCLCNNG 410 (857)
Q Consensus 337 ~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d----~~t~~~lI~~~~~~g 410 (857)
+++.....- ..+.... ..++..+...|...|++++|...|++..+... ..+ ..++..+...|...|
T Consensus 70 ~~~al~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 70 HHHDLTLARTIGDQLGE--------AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 998754310 0111111 11247888899999999999999987654311 011 446788888888889
Q ss_pred C--------------------HHHHHHHHHHHHhc---CCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCC
Q 003016 411 R--------------------WQDAMLVVEKIKSL---RHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDH--CEP 464 (857)
Q Consensus 411 ~--------------------~~~A~~l~~~m~~~---~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p 464 (857)
+ +++|...+.+.... .+..|. ..++..+...|...|++++|...|+...+. -.+
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 221 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 221 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC
Confidence 8 88888888765441 111111 234666667777777777777777776541 112
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHH
Q 003016 465 N----IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKG 539 (857)
Q Consensus 465 ~----~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~ 539 (857)
+ ..+|..+...|...|++++|...|++....... .+..+ ...++..+...|...|++++|...+++
T Consensus 222 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 222 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 2 235666777777777777777777766542200 00000 133455555556666666666666655
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 540 MALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 540 m~~~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m 575 (857)
.... +-.+. ..++..+...|...|++++|..+++..
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5432 10111 223444444444555555555555443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.14 E-value=2.7e-09 Score=118.74 Aligned_cols=284 Identities=11% Similarity=-0.012 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhh
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-I----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHR 303 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~ 303 (857)
..+..+...+...|++++|...|++..+. .|+ . ..|..+...|...|++++|...|++..... +
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~ 117 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA---GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------K 117 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------H
Confidence 34455666788889999999999988874 233 2 478888888999999999999988876431 0
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC------
Q 003016 304 KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGK------ 376 (857)
Q Consensus 304 k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~------ 376 (857)
..- .......+|..+...|...|++++|...+.+..+..- ..+.... ..++..+...|...|+
T Consensus 118 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~~~~ 187 (411)
T 4a1s_A 118 SMN--DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE--------GRALYNLGNVYHAKGKHLGQRN 187 (411)
T ss_dssp HTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH--------HHHHHHHHHHHHHHHHHHHHHS
T ss_pred Hcc--CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH--------HHHHHHHHHHHHHcCccccccc
Confidence 000 0122456788888899999999999999998865411 0111111 1224788889999999
Q ss_pred -----------HHHHHHHHHHHhhc----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHH
Q 003016 377 -----------INEAVAAVRNMEQR----GV-VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFT 436 (857)
Q Consensus 377 -----------~~~A~~lf~~m~~~----~~-~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~ 436 (857)
+++|...+++..+. +. .....+|..+...|...|++++|+..|++......-.++ ..++.
T Consensus 188 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 188 PGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999888875432 11 112346777888888899999998888877652110111 22566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH---CE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~---~~---p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
.+...|...|++++|...|+..... .. ....++..+...|.+.|++++|...|++....... .+.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~~~ 338 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE---------LGD 338 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------HTC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------CCC
Confidence 7777778888888888888776551 10 11456677777777778888887777776543200 000
Q ss_pred CC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 511 KP-DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 511 ~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.+ ...++..+...|...|++++|...+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 122444455555555666666665555543
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=1.5e-09 Score=120.75 Aligned_cols=246 Identities=12% Similarity=0.001 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDL----VVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~----~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...+..+...+...|++++|...|+++.... +.+. .+|..+...|...|++++|...+++
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 111 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG----------------TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----------------ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3455566778899999999999999998753 2233 4788888899999999999999998
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----C-CCCCHHHHHHHHHHHHHCCC--
Q 003016 340 LRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----G-VVGTASVYYELACCLCNNGR-- 411 (857)
Q Consensus 340 m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~-~~~d~~t~~~lI~~~~~~g~-- 411 (857)
..+..- ..+.... ..++..+...|...|++++|...|++..+. + ......+|..+...|...|+
T Consensus 112 al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 112 DLTLAKSMNDRLGE--------AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCchHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 865310 0111111 122578889999999999999999886543 1 11224467888888999999
Q ss_pred ---------------HHHHHHHHHHHHhc---CCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCC----H
Q 003016 412 ---------------WQDAMLVVEKIKSL---RHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPN----I 466 (857)
Q Consensus 412 ---------------~~~A~~l~~~m~~~---~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~----~ 466 (857)
+++|+..+.+.... .+..+ ...++..+...|...|++++|...|+...+. -.++ .
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 88888888775441 11111 1235667777778888888888888776551 0112 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.++..+...|...|++++|.+.|++....... .........++..+...+...|++++|...+++..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVE--------LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677777777788888888877776553200 00000012345555555556666666666665544
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.13 E-value=2e-09 Score=115.10 Aligned_cols=245 Identities=14% Similarity=0.036 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
...+......+...|++++|...|+++.... +.+ ...|..+...+...|++++|...+++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 68 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG----------------TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666778889999999999999988753 223 46788888899999999999999988
Q ss_pred HHHcCC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CCC----HHHHHHHHHHHHHCCC--
Q 003016 340 LRKSGL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV-VGT----ASVYYELACCLCNNGR-- 411 (857)
Q Consensus 340 m~~~g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~-~~d----~~t~~~lI~~~~~~g~-- 411 (857)
..+... .++.... ..++..+...|...|++++|...|++..+... .++ ..++..+...|...|+
T Consensus 69 al~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 69 DLTLARTIGDQLGE--------AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHHHHHTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhcccccHHH--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccc
Confidence 754310 0111111 11247888899999999999999988654211 112 3467788888888888
Q ss_pred ------------------HHHHHHHHHHHHhc---CCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCCC--
Q 003016 412 ------------------WQDAMLVVEKIKSL---RHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEPN-- 465 (857)
Q Consensus 412 ------------------~~~A~~l~~~m~~~---~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p~-- 465 (857)
+++|...+.+.... .+..+ ...++..+...+...|++++|...++...+. -.++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 88888888765431 11111 1234666666677777777777777766541 0111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 466 --IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 466 --~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
..++..+...|...|++++|...|++....... .+..+ ...++..+...+...|++++|...+++..
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ---------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---------hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 235666666777777777777777665542100 00000 12344445555555566666555555544
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=3.1e-09 Score=113.57 Aligned_cols=280 Identities=11% Similarity=-0.013 Sum_probs=193.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q 003016 315 VVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR---- 390 (857)
Q Consensus 315 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~---- 390 (857)
..+...-..+...|++++|...|+++.+.... +.... ...+..+...|...|++++|...+++..+.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 76 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTL--------SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI 76 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc
Confidence 34555566788999999999999999886422 22111 112478899999999999999999886532
Q ss_pred CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCCC------------------
Q 003016 391 GVV-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFTGLIISSMDGGH------------------ 447 (857)
Q Consensus 391 ~~~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g~------------------ 447 (857)
+.. ....+|..+...|...|++++|...|.+......-.++ ..++..+...|...|+
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 77 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 211 22456888889999999999999999887652111122 3367778888888888
Q ss_pred --HHHHHHHHHHHhhC---C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhh
Q 003016 448 --IDDCISIFQHMKDH---C---EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYS 518 (857)
Q Consensus 448 --~~~A~~if~~m~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~ 518 (857)
+++|...++....- . .....++..+...|...|++++|.+.|++....... .+..+ ...++.
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~ 227 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------FGDKAAERRAYS 227 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---------HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh---------cCChHHHHHHHH
Confidence 88898888876541 1 112356788888889999999999999887653200 00001 123677
Q ss_pred hhHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHH
Q 003016 519 SMLEASATAHQWEYFEYVYKGMALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIP-HPLFFT 588 (857)
Q Consensus 519 ~ll~a~~~~g~~~~a~~l~~~m~~~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p-~~~~~~ 588 (857)
.+...+...|++++|...+++.... +..+. ..++..+...|...|++++|..+++...+. +-.+ ...++.
T Consensus 228 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 307 (338)
T 3ro2_A 228 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 307 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7778888889999999888887643 11111 346667777788888999888888876543 1111 134666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 589 EMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
.+...+...|++++|...+++...
T Consensus 308 ~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 308 SLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 777778888888888888887653
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.10 E-value=1.5e-08 Score=112.00 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR-PHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
.|..+-..+...|++++|+..++.+++..+ .+..+|+.+-..|.+.|+ +++|+..|++..+. -+.+...|+.+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~ 172 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNA----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCc----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 444444555555666666666665555322 245555555555555554 56666555555542 12244555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
..++...|++++|+..|+++.... +-+...|..+..++.+.|++++|+..|+++++.
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ld----------------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l------- 229 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQD----------------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE------- 229 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-------
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC----------------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Confidence 555555555555555555555431 234555555555555555555555555555543
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHh
Q 003016 351 TYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCN-NGRWQDA-----MLVVEKIKS 424 (857)
Q Consensus 351 t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~-~g~~~~A-----~~l~~~m~~ 424 (857)
+.. +...|+.+..+|.+ .|..++| +..|++...
T Consensus 230 ----------------------------------------~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~ 268 (382)
T 2h6f_A 230 ----------------------------------------DVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268 (382)
T ss_dssp ----------------------------------------CTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------CCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence 321 33344444444544 3333444 355555544
Q ss_pred cCCCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-
Q 003016 425 LRHSKPLEITFTGLIISSMDGG--HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRND---------MFSKAKELFEET- 492 (857)
Q Consensus 425 ~~g~~pd~~t~~~ll~a~~~~g--~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~lf~~M- 492 (857)
. .+-+...|+.+...+.+.| ++++|...+..+ +..+.+...+..+...|.+.| ..++|+++|+++
T Consensus 269 l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~ 345 (382)
T 2h6f_A 269 L--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILA 345 (382)
T ss_dssp H--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred H--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 1 1223445666666666666 467777777766 434456778888888888764 358999999998
Q ss_pred HHcC
Q 003016 493 TRAN 496 (857)
Q Consensus 493 ~~~g 496 (857)
.+..
T Consensus 346 ~~~D 349 (382)
T 2h6f_A 346 KEKD 349 (382)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 6633
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.08 E-value=1e-06 Score=103.96 Aligned_cols=433 Identities=10% Similarity=0.039 Sum_probs=294.9
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCcCCCCCCC
Q 003016 151 WRSEAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS---WRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 151 ~~~~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~---~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
.+.+...|..+++...+.+.+..+..+|+.+... ++.+...|...+..-.+.++ .+.+..+|+..+.... ..|+
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~--~~~s 138 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKEL--GNND 138 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSS--CCCC
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcC--CCCC
Confidence 4578899999999999999999999999999876 35566788888888888888 9999999999876421 1378
Q ss_pred HHHHHHHHHHHHHcCCh--------hHHHHHHHHhHHcCCC-CCC-HHHHHHHHHHHH---------hcCCHHHHHHHHH
Q 003016 228 RFVYTKLLAILGKAGRP--------HEALRIFNLMLEDCNL-YPD-IAAYHSVAVTLG---------QVGLLKELVKLIE 288 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~--------~~A~~vf~~m~~~~gi-~pd-~~t~~~li~~~~---------~~g~~~~A~~l~~ 288 (857)
+..|..-+....+.+.. +...++|+......|. .++ ...|...+.-.. ..++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88999888877766654 3355889887776677 564 578888876543 2345778999999
Q ss_pred HHHcCCChhhhhhhhhcCCCCCCCCHHHHHH---HHHHH----------HhcCChHHHHHHHHHHHHc--CCC-------
Q 003016 289 RMRQKPSKRIKNMHRKNWDPVLEPDLVVYNA---VLNAC----------VPSHQWKGVFWVFKQLRKS--GLK------- 346 (857)
Q Consensus 289 ~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~---li~~~----------~~~g~~~~A~~l~~~m~~~--g~~------- 346 (857)
+....+. ..-..+|.. +.... -...+++.|...+.++... ++.
T Consensus 219 raL~iP~---------------~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 219 TLLCQPM---------------DCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHTTSCC---------------SSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHhCcc---------------HHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 9886541 111222221 11110 0112334455555554321 221
Q ss_pred --------C-----CHHHHHHHHHHHHHhHHHHHHHHHHHcC-------CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 003016 347 --------P-----SAATYGLAMESYRRCLLKVLVRAFWEEG-------KINEAVAAVRNMEQRGVVGTASVYYELACCL 406 (857)
Q Consensus 347 --------p-----d~~t~~~ll~~~~~~~~~~Li~~y~k~g-------~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~ 406 (857)
| +... ...|...+..--..+ ....+..+|++...... -+...|-..+.-+
T Consensus 284 ~~~~~~~~p~~~~~~~~q---------l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~ 353 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQ---------LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQ 353 (679)
T ss_dssp TTCCTTTSCCTTCCCHHH---------HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred ccchhccCCCCchhHHHH---------HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 1 0111 122455555433322 13345677887766532 3667788888888
Q ss_pred HHCCCHHHHH-HHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC----------CCC----------
Q 003016 407 CNNGRWQDAM-LVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC----------EPN---------- 465 (857)
Q Consensus 407 ~~~g~~~~A~-~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~----------~p~---------- 465 (857)
...|+.++|. .+|++... .++.+...+...+...-+.|+++.|..+|+.+...+ .|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~--~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQ--CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 8999999997 99998876 444566667778888889999999999999987521 132
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCccccCCCCCCCCCCHhHhhhhHHHHHhc-CCHHHHHHHHHHHH
Q 003016 466 --IGTVNAMLKVYSRNDMFSKAKELFEETTRA-NSSGYTFLSGDGAPLKPDEYTYSSMLEASATA-HQWEYFEYVYKGMA 541 (857)
Q Consensus 466 --~~~~~~li~~~~~~g~~~~A~~lf~~M~~~-g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~-g~~~~a~~l~~~m~ 541 (857)
..+|...+....+.|..+.|..+|.+.... + ...+......+.+. .+. ++.+.|..+|+..+
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~------------~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK------------LVTPDIYLENAYIE--YHISKDTKTACKVLELGL 497 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG------------GSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC------------CCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHH
Confidence 347888888888999999999999999875 2 01222232222222 233 55899999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH
Q 003016 542 LSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP--HPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE 619 (857)
Q Consensus 542 ~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p--~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~ 619 (857)
+. +.-+...+...+......|+.+.|..+|+........+ ....|...+.--...|+.+.+..+.++|... .|+.
T Consensus 498 k~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 498 KY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV 574 (679)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred HH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 75 44456666777887888999999999999988764322 3468888888888899999999999998754 3443
Q ss_pred HHHHHHHHHhh
Q 003016 620 RQWTELFESNE 630 (857)
Q Consensus 620 ~~~~~Ll~a~~ 630 (857)
.....+..-|+
T Consensus 575 ~~~~~f~~ry~ 585 (679)
T 4e6h_A 575 NKLEEFTNKYK 585 (679)
T ss_dssp CHHHHHHHHTC
T ss_pred cHHHHHHHHhc
Confidence 34444444443
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.08 E-value=1.2e-08 Score=112.74 Aligned_cols=231 Identities=11% Similarity=0.050 Sum_probs=176.3
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 154 EAEAIRVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGS-WRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 154 ~~~~~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
....+..+-..+...|.+++|+..|+...+.. +-+...|..+-..+...|+ +++|+..++.+++..+ .+..+|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P----~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP----KNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT----TCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC----CCHHHHH
Confidence 45667777778888999999999999999865 3456788889999999996 9999999999988643 3889999
Q ss_pred HHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC
Q 003016 233 KLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP 312 (857)
Q Consensus 233 ~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p 312 (857)
.+-.+|.+.|++++|+..|+++.+. -+.+...|..+..++.+.|++++|+..|+++.+.. +-
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~----------------P~ 232 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED----------------VR 232 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC----------------TT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----------------CC
Confidence 9999999999999999999999884 23478999999999999999999999999998853 45
Q ss_pred CHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC--CHHHHHHHH
Q 003016 313 DLVVYNAVLNACVP-SHQWKGV-----FWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG--KINEAVAAV 384 (857)
Q Consensus 313 d~~t~~~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g--~~~~A~~lf 384 (857)
+...|+.+..++.. .|..++| +..|+..++ +.|+.... |+.+...|.+.| +.++|...+
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a-----------~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESA-----------WNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHH-----------HHHHHHHHTTTCGGGCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHH-----------HHHHHHHHHccCccchHHHHHHH
Confidence 78899999999988 6665777 366666665 46666554 666666666666 466666666
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHH
Q 003016 385 RNMEQRGVVGTASVYYELACCLCNNG---------RWQDAMLVVEKI 422 (857)
Q Consensus 385 ~~m~~~~~~~d~~t~~~lI~~~~~~g---------~~~~A~~l~~~m 422 (857)
.++ +. ...+...+..+..+|.+.| ..++|+.+|+++
T Consensus 300 ~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 300 LDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 665 22 2233445556666665543 135566666555
No 63
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.08 E-value=9.5e-09 Score=116.58 Aligned_cols=343 Identities=10% Similarity=-0.002 Sum_probs=215.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh---hHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 196 LLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP---HEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 196 ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~---~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
+...+.+.|++++|.++|....+.+ +...+..|-.+|...|++ ++|...|++..+ .+...+..|..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g------~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----~~~~A~~~Lg~ 77 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG------YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----TSPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT------CCTGGGTCC---------------------------------CHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----CCHHHHHHHHH
Confidence 5556677889999999998886642 233455666677777888 899999988876 25666667766
Q ss_pred HHHhcC-----CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcC
Q 003016 273 TLGQVG-----LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW---KGVFWVFKQLRKSG 344 (857)
Q Consensus 273 ~~~~~g-----~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~---~~A~~l~~~m~~~g 344 (857)
.+...| ++++|...|++....| .++ .+..|...|...+.. ..+.+.+......|
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g----------------~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANG----------------EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTT----------------CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCC----------------CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 555555 7789999999988765 233 555566666654433 34555555555555
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Q 003016 345 LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK----INEAVAAVRNMEQRGVVGTASVYYELACCLCNNG---RWQDAML 417 (857)
Q Consensus 345 ~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~----~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g---~~~~A~~ 417 (857)
. |... ..|...|...+. .+.+..++......+. + .+..|...|.+.| +.++|+.
T Consensus 140 ~-~~a~--------------~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--~--a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 140 Y-PEAG--------------LAQVLLYRTQGTYDQHLDDVERICKAALNTTD--I--CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp C-TTHH--------------HHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT--T--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C-HHHH--------------HHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH--H--HHHHHHHHHHHcCCcccHHHHHH
Confidence 3 2222 567777777774 4555555555444332 2 5788888888899 8999999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHcC----CCHHHHHHHHHHHhhCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHH
Q 003016 418 VVEKIKSLRHSKPLEITFTGLIISSMDG----GHIDDCISIFQHMKDHCEPNIGTVNAMLKV-Y--SRNDMFSKAKELFE 490 (857)
Q Consensus 418 l~~~m~~~~g~~pd~~t~~~ll~a~~~~----g~~~~A~~if~~m~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~lf~ 490 (857)
.|++... .| .++...+..+-..|... ++.++|...|+... +-+...+..|-.. | ...+++++|.+.|+
T Consensus 201 ~~~~aa~-~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVS-RG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHH-TT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHH-CC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 9998887 34 44555555666666554 78999999999887 3566777777776 4 46889999999999
Q ss_pred HHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 003016 491 ETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAH-----QWEYFEYVYKGMALSGCQLDQTKHAWLLVEASR---- 561 (857)
Q Consensus 491 ~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g-----~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~---- 561 (857)
+..+.| +...+..+-..|. .| +.++|...|++.. . -+...+..|-..|..
T Consensus 276 ~Aa~~g----------------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 276 NGRAAD----------------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp HHHHTT----------------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTS
T ss_pred HHHHCC----------------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCC
Confidence 988755 4455656666665 45 8999999998876 3 355666666666655
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCC
Q 003016 562 AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAPF 615 (857)
Q Consensus 562 ~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M~~~~~ 615 (857)
..+.++|...|+...+.|. | .....|-..|.. ..+.++|..+++.....|.
T Consensus 335 ~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp SCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 3389999999999888764 2 233334344432 3578899999888876664
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=6.1e-08 Score=103.74 Aligned_cols=220 Identities=12% Similarity=0.042 Sum_probs=174.8
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVTLG-------QVGLL-------KELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
+.|..+|++.... .+.+...|..+...+. +.|++ ++|..+|++....- .
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------------L 95 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT---------------T
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh---------------C
Confidence 6788888888773 2346778888887775 35886 89999999998741 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
+.+...|..+...+.+.|++++|..+|++..+. .|+.... +|..+...+.+.|++++|..+|++..+.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~----------~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTL----------VYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHH----------HHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccH----------HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 346678999999999999999999999999974 5553321 1488889999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--CCC--C
Q 003016 391 GVVGTASVYYELACCLC-NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH--CEP--N 465 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~-~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--~~p--~ 465 (857)
+.. +...|........ ..|+.++|..+|+..... .+-+...+..++..+.+.|++++|..+|+..... +.| .
T Consensus 164 ~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 ART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp TTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 532 3444554433322 379999999999998873 2335677899999999999999999999999884 454 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|..++..+.+.|+.+.|..+++++.+..
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 7889999999999999999999999998865
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=1e-07 Score=102.04 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHHcCCC
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACV-------PSHQW-------KGVFWVFKQLRKSGLK 346 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~-------~~g~~-------~~A~~l~~~m~~~g~~ 346 (857)
++|..+|++.... .+.+...|..+...+. +.|++ ++|..+|++..+. +.
T Consensus 33 ~~a~~~~~~al~~----------------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLV----------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LL 95 (308)
T ss_dssp HHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TT
T ss_pred HHHHHHHHHHHHH----------------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hC
Confidence 6888999998874 3557788888887775 35886 8999999999873 34
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Q 003016 347 PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR 426 (857)
Q Consensus 347 pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~ 426 (857)
|+.... |..+...+.+.|++++|..+|++..+....-...+|..+...+.+.|++++|..+|++.....
T Consensus 96 p~~~~~-----------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 96 KKNMLL-----------YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp TTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred cccHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 554433 588999999999999999999999875422112379999999999999999999999998722
Q ss_pred CCCCcHHHHHHHHHHH-HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCC
Q 003016 427 HSKPLEITFTGLIISS-MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSG 505 (857)
Q Consensus 427 g~~pd~~t~~~ll~a~-~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~ 505 (857)
+++...|....... ...|+.++|..+|+...+..+.+...|..++..+.+.|++++|..+|++.....
T Consensus 165 --p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------- 233 (308)
T 2ond_A 165 --RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--------- 233 (308)
T ss_dssp --TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---------
T ss_pred --CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc---------
Confidence 23334444443332 237999999999999987555678999999999999999999999999998852
Q ss_pred CCCCCCC--CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 506 DGAPLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 506 ~~~~~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
.+.| ....|...+......|+.+.|..+++++.+.
T Consensus 234 ---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 ---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp ---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 0345 3567888888888889999999999988864
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.04 E-value=1.1e-08 Score=116.12 Aligned_cols=350 Identities=10% Similarity=-0.019 Sum_probs=226.0
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHcCCChhhhhhhhhcCCCCC
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL---KELVKLIERMRQKPSKRIKNMHRKNWDPVL 310 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~ 310 (857)
+...+.+.|++++|.+.|.+..+. | +...+..|-..|...|+. ++|..+|++... .
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~-----------------~ 67 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD-----------------T 67 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh-----------------C
Confidence 556778889999999999999874 3 445566666777778888 899999988753 2
Q ss_pred CCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHH---HHHH
Q 003016 311 EPDLVVYNAVLNACVPSH-----QWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKIN---EAVA 382 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~---~A~~ 382 (857)
+...+..+-..+...+ ++++|...|+...+.|... .+ ..|...|...+..+ ++.+
T Consensus 68 --~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~------------~~Lg~~y~~~~~~~~~~~a~~ 130 (452)
T 3e4b_A 68 --SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TL------------IPLAMLYLQYPHSFPNVNAQQ 130 (452)
T ss_dssp -----CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CH------------HHHHHHHHHCGGGCTTCCHHH
T ss_pred --CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HH------------HHHHHHHHhCCCCCCCHHHHH
Confidence 5556666666455544 7889999999999877433 22 56667777665543 3445
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Q 003016 383 AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL-RHSKPLEITFTGLIISSMDGG---HIDDCISIFQHM 458 (857)
Q Consensus 383 lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-~g~~pd~~t~~~ll~a~~~~g---~~~~A~~if~~m 458 (857)
.+......|.. ..+..+...|...+.++++.......... ....|+ .+..|-..|...| +.++|...|+..
T Consensus 131 ~~~~a~~~g~~---~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 131 QISQWQAAGYP---EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp HHHHHHHHTCT---THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH---HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 55555555542 24667778888888555544443332220 112333 7778888888899 999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH-H--HhcCCHH
Q 003016 459 KDHCEPNIGTVNAMLKVYSRN----DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA-S--ATAHQWE 531 (857)
Q Consensus 459 ~~~~~p~~~~~~~li~~~~~~----g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a-~--~~~g~~~ 531 (857)
.+.-.++...+..|-.+|... +++++|.+.|++.. .| +...+..+-.. + ...++.+
T Consensus 206 a~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----------------~~~a~~~Lg~~~~~~~~~~d~~ 268 (452)
T 3e4b_A 206 VSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----------------YPASWVSLAQLLYDFPELGDVE 268 (452)
T ss_dssp HHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----------------STHHHHHHHHHHHHSGGGCCHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----------------CHHHHHHHHHHHHhCCCCCCHH
Confidence 886667777777788888655 79999999999986 44 33444444444 2 4579999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 003016 532 YFEYVYKGMALSGCQLDQTKHAWLLVEASRAG-----KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEK 602 (857)
Q Consensus 532 ~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G-----~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~ 602 (857)
+|...|++..+.| +...+..|-..|. .| ++++|.+.|+... .| ++..+..|-..|.. ..++++
T Consensus 269 ~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 269 QMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHH
Confidence 9999999999877 5666667777776 55 9999999999877 33 55666666555544 239999
Q ss_pred HHHHHHHhhhCCCccCHHHHHHHHH-HhhhccCHHHHHHHHHHHHhCCCC
Q 003016 603 AVALINAMAYAPFHITERQWTELFE-SNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 603 A~~l~~~M~~~~~~p~~~~~~~Ll~-a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
|..+|++....|.......+..++. +.+...+.+.+...++...+.|..
T Consensus 341 A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 341 ALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 9999999887775433333333332 234467899999999888887743
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.04 E-value=1.7e-09 Score=114.76 Aligned_cols=247 Identities=11% Similarity=0.099 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+..+|..+...|...|++++|..+|+++.... .+...........++..+...|...|++++|...+++..+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL--------EKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35677777888888888888888888776520 0000000233566788899999999999999999999876
Q ss_pred c------CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CC-CCCHHHHHHHHHHHHHC
Q 003016 343 S------GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR------GV-VGTASVYYELACCLCNN 409 (857)
Q Consensus 343 ~------g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~------~~-~~d~~t~~~lI~~~~~~ 409 (857)
. +-.|.... ++..+...|...|++++|...|++..+. +. .....+|..+...|...
T Consensus 98 ~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 98 IREKTLGKDHPAVAA-----------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp HHHHHHCTTCHHHHH-----------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCChHHHH-----------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 4 22233222 2588999999999999999999988754 22 22345688888999999
Q ss_pred CCHHHHHHHHHHHHhcC-----CCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhhC--------CCCC-------HHH
Q 003016 410 GRWQDAMLVVEKIKSLR-----HSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKDH--------CEPN-------IGT 468 (857)
Q Consensus 410 g~~~~A~~l~~~m~~~~-----g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~~--------~~p~-------~~~ 468 (857)
|++++|+..|++..... +..|+ ..++..+...|...|++++|...|+.+.+. ..+. ...
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 99999999999887620 22333 346788888899999999999999888651 1111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+..+...+...+.+.+|...+....... ..+..+|..+..+|...|++++|...|++..+
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDS--------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHC-------CCSCCCC---------C--------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCC--------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2223333334445555555555554322 12345666777777777888888777776654
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.98 E-value=1.6e-08 Score=107.21 Aligned_cols=240 Identities=12% Similarity=0.122 Sum_probs=167.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCC-
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQR-------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKP- 430 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~-------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~p- 430 (857)
+..+...|...|++++|..+|+++.+. +......+|..+...|...|++++|...|++..... +..|
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 488999999999999999999998763 333445678889999999999999999999887631 2223
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHC--------EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTF 502 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~--------~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~ 502 (857)
...++..+...|...|++++|...|+...+.. ......+..+...|...|++++|.++|+++......
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---- 185 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT---- 185 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----
Confidence 35678889999999999999999999887621 224567888999999999999999999998774100
Q ss_pred cCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHH-------HHHHHHHHHHHcCCHHH
Q 003016 503 LSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS-------GCQLDQT-------KHAWLLVEASRAGKCHL 567 (857)
Q Consensus 503 ~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-------g~~pd~~-------t~~~Ll~~~~~~G~~~~ 567 (857)
...+..| ...++..+...+...|++++|...++++.+. ...+... .+..+...+...+.+.+
T Consensus 186 ---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 186 ---KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp ---TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred ---HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 0000134 3457888888999999999999999998863 1222211 22222233344555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 568 LEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 568 A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
+...++...... ..+..+|..+...|.+.|++++|...+++..
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666554421 2245688889999999999999999999865
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.96 E-value=8.9e-08 Score=93.46 Aligned_cols=161 Identities=15% Similarity=0.048 Sum_probs=103.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
|..|-..|.+.|++++|...|++..+.+.. +..+|..+..+|.+.|++++|+..+...... .+.+...+..+...+.
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 466777777777777777777776665432 4556677777777777777777777766552 2233445555556666
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLE 522 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~ 522 (857)
..++++.+...+.......+.+...+..+...|.+.|++++|++.|++..+.. | +..+|..+..
T Consensus 85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~~~lg~ 149 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------PGFIRAYQSIGL 149 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------chhhhHHHHHHH
Confidence 66777777777666665444556666666667777777777777777666643 4 3455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~ 542 (857)
++...|++++|...|++.++
T Consensus 150 ~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 150 AYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666654
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.93 E-value=6.1e-08 Score=107.02 Aligned_cols=304 Identities=8% Similarity=-0.021 Sum_probs=200.2
Q ss_pred HhcCCHHHHHHHHHHHHhCcCCC-CCCCHHHHHHHHHHHH--HcCChhHHH-----------HHHHHhHHcCCCCCCHHH
Q 003016 201 GDKGSWRQAMSVLDWVYGLKDKR-DLKSRFVYTKLLAILG--KAGRPHEAL-----------RIFNLMLEDCNLYPDIAA 266 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~n~Li~~y~--k~g~~~~A~-----------~vf~~m~~~~gi~pd~~t 266 (857)
.+.++++.|..+.+.+....... ..++...|-.++..-. -.+.++.+. +.|+.+... ..+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~---~~~~~~ 99 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK---QARLTG 99 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH---THHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc---CCCchh
Confidence 34577777777777764432211 1123344444443211 123333344 666666542 011111
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003016 267 ------YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQ 339 (857)
Q Consensus 267 ------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~ 339 (857)
|......+...|++++|...|++....-. +. .-.+ ...+|..+...|...|+++.|...+.+
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--------~~---~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~ 168 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLI--------FV---KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQ 168 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG--------GC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh--------hC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22255667889999999999999976420 00 0111 346788888999999999999999999
Q ss_pred HHHcCCC-CC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----C-CCCCHHHHHHHHHHHHHCCCH
Q 003016 340 LRKSGLK-PS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----G-VVGTASVYYELACCLCNNGRW 412 (857)
Q Consensus 340 m~~~g~~-pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~-~~~d~~t~~~lI~~~~~~g~~ 412 (857)
..+.--. ++ .... ..+++.+...|...|++++|...|++..+. + ......+|+.+..+|...|++
T Consensus 169 al~~~~~~~~~~~~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 240 (383)
T 3ulq_A 169 AYEIYKEHEAYNIRL--------LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY 240 (383)
T ss_dssp HHHHHHTCSTTHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCccchHHH--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence 8754211 11 1111 122488899999999999999999887643 1 111134688899999999999
Q ss_pred HHHHHHHHHHHhc---CCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----CCCCHHHHHHHHHHHHhcCC--
Q 003016 413 QDAMLVVEKIKSL---RHS-KPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-----CEPNIGTVNAMLKVYSRNDM-- 481 (857)
Q Consensus 413 ~~A~~l~~~m~~~---~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-----~~p~~~~~~~li~~~~~~g~-- 481 (857)
++|+..|++.... .+. +....++..+...|.+.|++++|...++....- .+.....++.+-..|...|+
T Consensus 241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999987651 133 333567888999999999999999999987651 11122335677788888898
Q ss_pred -HHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 482 -FSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 482 -~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+++|+.++++.. ..|+ ...+..+...|...|++++|...+++..+
T Consensus 321 ~~~~al~~~~~~~----------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 321 AIQGFFDFLESKM----------------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTT----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc----------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 788888887752 2333 34566677788888999999888887764
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.92 E-value=1.1e-07 Score=104.99 Aligned_cols=303 Identities=9% Similarity=-0.015 Sum_probs=176.0
Q ss_pred HHHcCChhHHHHHHHHhHHcC-CCCCC--HHHHHHHHHHHH--hcCCHHHHH-----------HHHHHHHcCCChhhhhh
Q 003016 238 LGKAGRPHEALRIFNLMLEDC-NLYPD--IAAYHSVAVTLG--QVGLLKELV-----------KLIERMRQKPSKRIKNM 301 (857)
Q Consensus 238 y~k~g~~~~A~~vf~~m~~~~-gi~pd--~~t~~~li~~~~--~~g~~~~A~-----------~l~~~m~~~g~~~l~~m 301 (857)
+.+.+++++|..+++++.... .+..| ...|-.++..-. ..+.++.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~------- 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ------- 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-------
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-------
Confidence 456899999999999987632 22233 344444443211 223333333 5555554321
Q ss_pred hhhcCCCCCCCC-HH---HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC
Q 003016 302 HRKNWDPVLEPD-LV---VYNAVLNACVPSHQWKGVFWVFKQLRKSG-LKPSAATYGLAMESYRRCLLKVLVRAFWEEGK 376 (857)
Q Consensus 302 ~~k~f~~~~~pd-~~---t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~ 376 (857)
...+ .. .|......+...|++++|...|++..+.- -.++.... ..++..+...|...|+
T Consensus 95 --------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------a~~~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 95 --------ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEK--------AEFFFKMSESYYYMKQ 158 (383)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHH--------HHHHHHHHHHHHHTTC
T ss_pred --------CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHH--------HHHHHHHHHHHHHcCC
Confidence 0101 11 11224445778999999999999997641 12343322 1224888899999999
Q ss_pred HHHHHHHHHHHhhcC--C----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCC
Q 003016 377 INEAVAAVRNMEQRG--V----VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFTGLIISSMDGG 446 (857)
Q Consensus 377 ~~~A~~lf~~m~~~~--~----~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g 446 (857)
.+.|...+++..+.. . .....+++.+...|...|++++|+..|.+......-.++ ..++..+-..|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 999999998865421 1 112356778888889999999999988877652111111 235677777778888
Q ss_pred CHHHHHHHHHHHhh-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhh
Q 003016 447 HIDDCISIFQHMKD-----HC-EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSS 519 (857)
Q Consensus 447 ~~~~A~~if~~m~~-----~~-~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ 519 (857)
++++|...|+...+ +. +....++..+...|.+.|++++|...|++....... .-.|. ...+..
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~ 308 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK----------AGDVIYLSEFEF 308 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHH
Confidence 88888888877765 23 233566777777778888888888877776542100 00011 112334
Q ss_pred hHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 520 MLEASATAHQ---WEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 520 ll~a~~~~g~---~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
+-..+...|+ +++|..++++. +..|+. ..+..+...|...|++++|..+|+...
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444555555 44444444432 222222 244445555566666666666665543
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.92 E-value=1.4e-07 Score=91.99 Aligned_cols=168 Identities=15% Similarity=0.204 Sum_probs=144.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 313 DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 313 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
+...|..+-..|.+.|++++|.+.|++..+. .|+.... |..+...|.+.|++++|...+........
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~-----------~~~la~~~~~~~~~~~a~~~~~~~~~~~~ 70 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVET-----------LLKLGKTYMDIGLPNDAIESLKKFVVLDT 70 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHCCCHHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999999886 4544332 48899999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHH
Q 003016 393 VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAM 472 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~l 472 (857)
. +...+..+...+...++++.|...+.+.... .+.+...+..+-..|.+.|++++|...|+...+..+.+..+|..+
T Consensus 71 ~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 147 (184)
T 3vtx_A 71 T-SAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSI 147 (184)
T ss_dssp C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHH
Confidence 3 4566888888999999999999999998772 334567788889999999999999999999988666788999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 473 LKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 473 i~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|.+.|++++|++.|++..+..
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999998844
No 73
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.88 E-value=5.7e-08 Score=110.84 Aligned_cols=210 Identities=8% Similarity=-0.072 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003016 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP-HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELV 284 (857)
Q Consensus 206 ~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~ 284 (857)
++.+.+.++..... ...+...+..+-..|...|++ ++|+..|++..+. -+.+...|..+..+|.+.|++++|.
T Consensus 84 ~~~al~~l~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGS----AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTT----CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcc----CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 56677777766543 234788999999999999999 9999999998874 1235889999999999999999999
Q ss_pred HHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 285 KLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS---------HQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 285 ~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
..|++..+ ..|+...|..+...+... |++++|.+.|++..+.. |+....
T Consensus 158 ~~~~~al~-----------------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~--- 215 (474)
T 4abn_A 158 TCFSGALT-----------------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRS--- 215 (474)
T ss_dssp HHHHHHHT-----------------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH---
T ss_pred HHHHHHHh-----------------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHH---
Confidence 99999987 457778899999999999 99999999999998863 443322
Q ss_pred HHHHHHhHHHHHHHHHHHc--------CCHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Q 003016 356 MESYRRCLLKVLVRAFWEE--------GKINEAVAAVRNMEQRGVV--GTASVYYELACCLCNNGRWQDAMLVVEKIKSL 425 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~--------g~~~~A~~lf~~m~~~~~~--~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~ 425 (857)
|..+...|... |++++|...|++..+.+.. -+...|..+..+|...|++++|+..|++....
T Consensus 216 --------~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 216 --------WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp --------HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36777777777 7788888888777665421 35566777777777777777777777766552
Q ss_pred CCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 426 RHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 426 ~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
. +-+...+..+...+...|++++|..
T Consensus 288 ~--p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 288 D--PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122334444444444444444443
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.87 E-value=5.7e-08 Score=110.83 Aligned_cols=213 Identities=8% Similarity=-0.036 Sum_probs=181.2
Q ss_pred ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHH
Q 003016 243 RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLL-KELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVL 321 (857)
Q Consensus 243 ~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li 321 (857)
.++.|...++..... -+.+...|..+...|...|++ ++|.+.|++..+.. +.+...|..+.
T Consensus 83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----------------p~~~~a~~~lg 144 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----------------PELVEAWNQLG 144 (474)
T ss_dssp HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----------------TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----------------CCCHHHHHHHH
Confidence 366777788877652 234788999999999999999 99999999998753 44688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc---------CCHHHHHHHHHHHhhcCC
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE---------GKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~---------g~~~~A~~lf~~m~~~~~ 392 (857)
..|.+.|++++|.+.|+...+. .|+...+ ..+...|... |++++|...|++..+.+.
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~------------~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALTH--CKNKVSL------------QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTT--CCCHHHH------------HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCHHHH------------HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 9999999999999999999876 4775444 7888899999 999999999999987753
Q ss_pred CCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 393 VGTASVYYELACCLCNN--------GRWQDAMLVVEKIKSLRHSKP----LEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 393 ~~d~~t~~~lI~~~~~~--------g~~~~A~~l~~~m~~~~g~~p----d~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
-+...|..+..+|... |++++|+..|++.... .| +...+..+-.+|...|++++|...|+...+
T Consensus 211 -~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 211 -LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3577899999999998 9999999999999873 34 677899999999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 461 HCEPNIGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 461 ~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
..+.+...+..+...+...|++++|++.+.+
T Consensus 287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5556788899999999999999999876644
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.82 E-value=1.9e-06 Score=94.36 Aligned_cols=277 Identities=12% Similarity=-0.022 Sum_probs=181.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLV----VYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~----t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
......+...|++++|...+++..... ...+.. +++.+...+...|++++|...+.+....
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 82 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL---------------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM 82 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC---------------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC---------------CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334455667899999999999987653 222332 4666677788899999999999988653
Q ss_pred CC-CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCC--C-CHHHHHHHHHHHHHCCCHHHH
Q 003016 344 GL-KPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----GVV--G-TASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 344 g~-~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~~--~-d~~t~~~lI~~~~~~g~~~~A 415 (857)
.. .++.... ..+++.+...|...|++++|...+++.... +.. | ...++..+...|...|++++|
T Consensus 83 ~~~~~~~~~~--------~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (373)
T 1hz4_A 83 ARQHDVWHYA--------LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA 154 (373)
T ss_dssp HHHTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCcHHHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 21 1122211 012367888899999999999999887542 221 2 234566788889999999999
Q ss_pred HHHHHHHHhcCC-CCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-CCC-CHHHHH-----HHHHHHHhcCCHHHH
Q 003016 416 MLVVEKIKSLRH-SKP--LEITFTGLIISSMDGGHIDDCISIFQHMKDH-CEP-NIGTVN-----AMLKVYSRNDMFSKA 485 (857)
Q Consensus 416 ~~l~~~m~~~~g-~~p--d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-~~p-~~~~~~-----~li~~~~~~g~~~~A 485 (857)
...+.+...... ..+ ...++..+...+...|++++|...++..... -.+ +...|. ..+..+...|++++|
T Consensus 155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 234 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 234 (373)
T ss_dssp HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence 999998775221 111 2356777888889999999999999988651 111 111222 233457789999999
Q ss_pred HHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHH
Q 003016 486 KELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLDQT-KHAWLLVEAS 560 (857)
Q Consensus 486 ~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~~pd~~-t~~~Ll~~~~ 560 (857)
...+.+...... .........+..+...+...|++++|...++..... |..++.. .+..+-..+.
T Consensus 235 ~~~~~~a~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 235 ANWLRHTAKPEF----------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HHHHHHSCCCCC----------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCC----------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 999988764320 000011224556667777788888888888776542 2222222 4444555566
Q ss_pred HcCCHHHHHHHHHHHHH
Q 003016 561 RAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 561 ~~G~~~~A~~~~~~m~~ 577 (857)
..|+.++|...++....
T Consensus 305 ~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHH
Confidence 77777777777766543
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.82 E-value=3.1e-07 Score=88.63 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 003016 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 551 t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M 610 (857)
.+..+...|...|++++|..+++.+.+.. +.+...|..+...+...|++++|...+++.
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333344444444444444444433321 112334444444444444444444444443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.81 E-value=3.6e-07 Score=88.18 Aligned_cols=162 Identities=10% Similarity=0.006 Sum_probs=131.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
+..+...|...|++++|...|+++.+... .+..+|..+...|...|++++|...+++.... .+.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 46778888899999999999998876543 35677888899999999999999999998772 2345677888888888
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEA 523 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a 523 (857)
..|++++|...|+.+....+.+...+..+...|.+.|++++|.+.|++..... ..+..++..+...
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~la~~ 153 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--------------PNEGKVHRAIAFS 153 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------TTCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------------ccchHHHHHHHHH
Confidence 89999999999998887656678888888899999999999999999888754 1245677777788
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003016 524 SATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 524 ~~~~g~~~~a~~l~~~m~~ 542 (857)
+...|++++|...++++.+
T Consensus 154 ~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 154 YEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887765
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.80 E-value=2.9e-06 Score=92.93 Aligned_cols=272 Identities=8% Similarity=-0.014 Sum_probs=190.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA----SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFT 436 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~----~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~ 436 (857)
..+...+...|++++|...+++........+. .+++.+...|...|++++|...+.+......-.++ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34455677899999999999997765433332 24666778888999999999999887652111122 23356
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhC-----CC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDH-----CE--P-NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~-----~~--p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
.+-..+...|++++|...++..... .. | ....+..+...|...|++++|...+++.......
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------- 167 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS---------- 167 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc----------
Confidence 6777889999999999999988651 11 2 2456677888999999999999999998765410
Q ss_pred CCCC--CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 003016 509 PLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD--QTKHA----WLLVEASRAGKCHLLEHAFDSLLEAGE 580 (857)
Q Consensus 509 ~~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd--~~t~~----~Ll~~~~~~G~~~~A~~~~~~m~~~gi 580 (857)
..+ ...+|..+...+...|++++|...+++.....-.++ ..... .....+...|++++|...++.......
T Consensus 168 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 168 -YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp -SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred -cCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 111 234567777788889999999999998875421211 11111 233447799999999999988765422
Q ss_pred CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh----CCCccCHH-HHHHHHHHhhhccCHHHHHHHHHHHHh
Q 003016 581 IP---HPLFFTEMLIQAIVQSNYEKAVALINAMAY----APFHITER-QWTELFESNEDRISRDKLEKLLNALCN 647 (857)
Q Consensus 581 ~p---~~~~~~~li~~~~~~g~~~~A~~l~~~M~~----~~~~p~~~-~~~~Ll~a~~~~g~~e~~~~l~~~m~~ 647 (857)
.+ ....+..+...+...|++++|...+++... .|..++.. ++..+-.++...|+.+.+...++...+
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 133566777888899999999999988643 23323332 555556677888999999888776653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.80 E-value=1.2e-06 Score=96.48 Aligned_cols=317 Identities=11% Similarity=-0.004 Sum_probs=203.9
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCcCCC-CCCCHHHHHHHHHHHH--HcCChhHHH---------HHH
Q 003016 186 LMFTEGQMLKLLKGL--GDKGSWRQAMSVLDWVYGLKDKR-DLKSRFVYTKLLAILG--KAGRPHEAL---------RIF 251 (857)
Q Consensus 186 ~~p~~~t~~~ll~a~--~~~g~~~~A~~l~~~~~~~~~~~-~~~~~~~~n~Li~~y~--k~g~~~~A~---------~vf 251 (857)
+.|+...-..|-..| ...++++.|..+.+.+.+..... ..+++..|-.|+..-. -.+....+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345555555666666 66778888888887764432111 1123444444444311 112222222 555
Q ss_pred HHhHHcCCCCC-C-HH---HHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC----CHHHHHHHHH
Q 003016 252 NLMLEDCNLYP-D-IA---AYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP----DLVVYNAVLN 322 (857)
Q Consensus 252 ~~m~~~~gi~p-d-~~---t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p----d~~t~~~li~ 322 (857)
+.+... . .+ + .. .|......+...|++++|...|++...... ..+ ...++..+..
T Consensus 86 ~~i~~~-~-~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~--------------~~~~~~~~a~~~~~lg~ 149 (378)
T 3q15_A 86 ETIETP-Q-KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELP--------------FVSDDIEKAEFHFKVAE 149 (378)
T ss_dssp HHHHGG-G-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGG--------------GCCCHHHHHHHHHHHHH
T ss_pred HHHhcc-C-CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh--------------hCCChHHHHHHHHHHHH
Confidence 555431 0 01 1 11 233344556789999999999999876520 112 2457888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CC-CCC
Q 003016 323 ACVPSHQWKGVFWVFKQLRKSGLK-PS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR----GV-VGT 395 (857)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~-~~d 395 (857)
.|...|+++.|...+.+..+.... ++ .... ..+++.+...|...|++++|...|++..+. +. ...
T Consensus 150 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 221 (378)
T 3q15_A 150 AYYHMKQTHVSMYHILQALDIYQNHPLYSIRT--------IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFI 221 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988753211 11 1111 112488999999999999999999886542 11 112
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC-----CCCCHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSL---RHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH-----CEPNIG 467 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~---~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~-----~~p~~~ 467 (857)
..+++.+..+|...|++++|+..|.+.... .+.+....++..+...|.+.|+.++|...++...+- .+....
T Consensus 222 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 301 (378)
T 3q15_A 222 AISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE 301 (378)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 346888899999999999999999987651 122333567888889999999999999999998762 122244
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 468 TVNAMLKVYSRNDM---FSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 468 ~~~~li~~~~~~g~---~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.++.+-..|...|+ +.+|+..+++. + ..|+. ..+..+...|...|++++|...|++..+
T Consensus 302 ~~~~l~~ly~~~~~~~~~~~al~~~~~~---~-------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 302 LFLFLQAVYKETVDERKIHDLLSYFEKK---N-------------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHT---T-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHhC---C-------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666677777888 78888888763 2 22332 3455677778888888888888877653
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.77 E-value=1.1e-06 Score=96.68 Aligned_cols=316 Identities=9% Similarity=0.007 Sum_probs=180.0
Q ss_pred CCCHHHHHHHHHHH--HHcCChhHHHHHHHHhHHcC-CCC--CCHHHHHHHHHHHH--hcCCHHH---------HHHHHH
Q 003016 225 LKSRFVYTKLLAIL--GKAGRPHEALRIFNLMLEDC-NLY--PDIAAYHSVAVTLG--QVGLLKE---------LVKLIE 288 (857)
Q Consensus 225 ~~~~~~~n~Li~~y--~k~g~~~~A~~vf~~m~~~~-gi~--pd~~t~~~li~~~~--~~g~~~~---------A~~l~~ 288 (857)
.|+..+-+.|-..| .+.+++++|..+++++.... .+. +++..|-.++..-. -.+.+.. ....++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 35677778888887 88999999999999876531 122 23444444443311 1111111 225555
Q ss_pred HHHcCCChhhhhhhhhcCCCCCC-CCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhH
Q 003016 289 RMRQKPSKRIKNMHRKNWDPVLE-PDLV---VYNAVLNACVPSHQWKGVFWVFKQLRKSGL-KPSAATYGLAMESYRRCL 363 (857)
Q Consensus 289 ~m~~~g~~~l~~m~~k~f~~~~~-pd~~---t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~~~~~~~ 363 (857)
.+.... .. .+.. .|......+...|++++|...|.+..+... .++.... ..+
T Consensus 87 ~i~~~~---------------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------a~~ 143 (378)
T 3q15_A 87 TIETPQ---------------KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEK--------AEF 143 (378)
T ss_dssp HHHGGG---------------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHH--------HHH
T ss_pred HHhccC---------------CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHH--------HHH
Confidence 554321 01 1111 122233346789999999999999876421 2333222 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhc----CC-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCC-cHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQR----GV-V-GTASVYYELACCLCNNGRWQDAMLVVEKIKSLR---HSKP-LEI 433 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~----~~-~-~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~---g~~p-d~~ 433 (857)
+..+...|...|+.+.|...+++..+. +- . ....+++.+..+|...|++++|...|.+..... +..+ ...
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 223 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAI 223 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 478888999999999999999876542 11 1 124567788888889999999998888766521 1111 123
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCC
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKD-----HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGA 508 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~ 508 (857)
++..+-..|...|++++|...|+.... +.+....++..+...|.+.|++++|...|++....... .
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~ 294 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA---------R 294 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT---------T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------c
Confidence 466666677777777777777777655 33333566667777777777777777777776654300 0
Q ss_pred CCCCC-HhHhhhhHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 509 PLKPD-EYTYSSMLEASATAHQ---WEYFEYVYKGMALSGCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 509 ~~~pd-~~t~~~ll~a~~~~g~---~~~a~~l~~~m~~~g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
-.|. ...+..+-..+...++ +.+|...++. .+..|+. ..+..+...|...|++++|..+|+...
T Consensus 295 -~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 295 -SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp -CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0111 1223333333334455 4444444443 2222222 233444445556666666666555543
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.75 E-value=2.3e-07 Score=96.41 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC------
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDH------ 461 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~------ 461 (857)
....+|..+...|...|++++|+..|.+..... +..| ...++..+...|...|++++|...|......
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 345678889999999999999999999887631 2223 3457888999999999999999999988652
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHH
Q 003016 462 --CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYK 538 (857)
Q Consensus 462 --~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~ 538 (857)
.+....++..+...|...|++++|...|++....... ...+-.| ...++..+...|...|++++|...++
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 193 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT-------RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYK 193 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-------HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1234677889999999999999999999998875000 0000124 34678888899999999999999999
Q ss_pred HHHHc-------CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH---C-C-CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 003016 539 GMALS-------GCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLE---A-G-EIP-HPLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 539 ~m~~~-------g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~---~-g-i~p-~~~~~~~li~~~~~~g~~~~A~ 604 (857)
+..+. ...+... .+..+...+...+....+.. +..+.. . + ..| ...+|..+...|...|++++|.
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 272 (283)
T 3edt_B 194 EILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAH 272 (283)
T ss_dssp HHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 98863 1223322 22222222322222222222 211111 1 1 112 3457888888999999999999
Q ss_pred HHHHHhhh
Q 003016 605 ALINAMAY 612 (857)
Q Consensus 605 ~l~~~M~~ 612 (857)
.++++...
T Consensus 273 ~~~~~al~ 280 (283)
T 3edt_B 273 TLEDCASR 280 (283)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998654
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.70 E-value=3e-07 Score=95.55 Aligned_cols=173 Identities=15% Similarity=0.161 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS------GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
+....+|..+...|...|++++|...+.+..+. +-.|.... ++..+...|...|++++|...|
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-----------TLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH-----------HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH-----------HHHHHHHHHHHhccHHHHHHHH
Confidence 335678889999999999999999999998765 22232222 2588999999999999999999
Q ss_pred HHHhhc------C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCC-cHHHHHHHHHHHHcCCCHHHH
Q 003016 385 RNMEQR------G-VVGTASVYYELACCLCNNGRWQDAMLVVEKIKSL-----RHSKP-LEITFTGLIISSMDGGHIDDC 451 (857)
Q Consensus 385 ~~m~~~------~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-----~g~~p-d~~t~~~ll~a~~~~g~~~~A 451 (857)
++..+. . ......+|..+...|...|++++|...|++.... ....| ...++..+...|...|++++|
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 987654 1 1233567888999999999999999999998773 01133 346788899999999999999
Q ss_pred HHHHHHHhhC------------------------------------------------C-CCCHHHHHHHHHHHHhcCCH
Q 003016 452 ISIFQHMKDH------------------------------------------------C-EPNIGTVNAMLKVYSRNDMF 482 (857)
Q Consensus 452 ~~if~~m~~~------------------------------------------------~-~p~~~~~~~li~~~~~~g~~ 482 (857)
...|+...+. . +....++..+...|.+.|++
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 268 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 9999887641 0 12245688899999999999
Q ss_pred HHHHHHHHHHHH
Q 003016 483 SKAKELFEETTR 494 (857)
Q Consensus 483 ~~A~~lf~~M~~ 494 (857)
++|..+|++..+
T Consensus 269 ~~A~~~~~~al~ 280 (283)
T 3edt_B 269 EAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.63 E-value=2.9e-06 Score=85.81 Aligned_cols=173 Identities=12% Similarity=0.031 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 311 EPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
..|+..|......+...|++++|...|....+....++...+ ..+...|.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTA------------YNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHH------------HHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 346688888899999999999999999999987654676665 45888999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC-
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-----ITFTGLIISSMDGGHIDDCISIFQHMKDHCEP- 464 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-----~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p- 464 (857)
+.. +..+|..+..+|...|++++|+..|++......-.+.. .+|..+-..+...|++++|...|+...+..+.
T Consensus 72 ~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 150 (228)
T 4i17_A 72 NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKK 150 (228)
T ss_dssp TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHH
T ss_pred Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 533 56678999999999999999999999988732222211 45777778888999999999999999874334
Q ss_pred -CHHHHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHHcC
Q 003016 465 -NIGTVNAMLKVYSRNDMF---------------------------SKAKELFEETTRAN 496 (857)
Q Consensus 465 -~~~~~~~li~~~~~~g~~---------------------------~~A~~lf~~M~~~g 496 (857)
+...|..+...|...|.. ++|+..|++..+..
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 151 WKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 467888888888888887 88999999988854
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=1.5e-06 Score=78.67 Aligned_cols=131 Identities=15% Similarity=0.238 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
.|..+...|...|++++|..+|+++.+.+. .+..+|..+...+...|++++|...|+++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 357888999999999999999999987653 35677888999999999999999999999872 234567788899999
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
...|++++|..+|+.+....+.+...+..+...|.+.|++++|...|.++....
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999999988555678899999999999999999999999998754
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.59 E-value=5.4e-06 Score=83.76 Aligned_cols=189 Identities=10% Similarity=-0.023 Sum_probs=146.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+...|.+.|++++|...|++..+.+..++...|..+..+|...|++++|+..|++... ..+-+..++..+-..|..
T Consensus 11 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 88 (228)
T 4i17_A 11 KNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAAYRD 88 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHH
Confidence 677888999999999999999998877656777788899999999999999999999987 223356678889999999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---H
Q 003016 445 GGHIDDCISIFQHMKDHCEPNI-------GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD---E 514 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd---~ 514 (857)
.|++++|...|+...+..+.+. ..|..+-..+.+.|++++|++.|++..+.. |+ .
T Consensus 89 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------------p~~~~~ 153 (228)
T 4i17_A 89 MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---------------SKKWKT 153 (228)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---------------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---------------CCcccH
Confidence 9999999999999988545556 568888888999999999999999998744 76 3
Q ss_pred hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 515 YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
..|..+...|... +..+++++...+ ..+...|..... ...+.+++|...|+...+.
T Consensus 154 ~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 154 DALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence 4566666666543 444455555443 233444544432 3456789999999998874
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.59 E-value=1.2e-06 Score=104.61 Aligned_cols=165 Identities=23% Similarity=0.240 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
+..+|+.|-..|.+.|++++|+..|++..+. .| +..+|+.+..+|.+.|++++|+..|++..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l---~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----------- 73 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----------- 73 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------
Confidence 4566777777777777777777777776652 23 36667777777777777777777777766532
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVR 385 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~ 385 (857)
+-+..+|+.+-.++.+.|++++|++.|++..+. .|+.... |+.|...|.+.|++++|+..|+
T Consensus 74 -----P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a-----------~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 74 -----PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADA-----------HSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHH
Confidence 234666777777777777777777777776654 3332221 3666666777777777777777
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 386 NMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 386 ~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
+..+.+.. +...|..+..+|...|++++|.+.|++..+
T Consensus 136 ~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 136 TALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 66654422 344566666777777777777666665544
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.55 E-value=3.2e-06 Score=76.45 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHH
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVA 271 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li 271 (857)
.+..+...+...|+++.|..+++.+.+.. +.+..++..+...|...|++++|...|+++... .+.+...|..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC----CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHH
Confidence 45666777788888888888888887642 236777888888888888888888888888763 234577888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 272 VTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
..+...|++++|...|+++.... +.+..+|..+...+.+.|++++|...+.++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~----------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888888887642 446777888888888888888888888888764
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.55 E-value=2.2e-06 Score=102.21 Aligned_cols=161 Identities=14% Similarity=0.187 Sum_probs=138.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
++.|-..|.+.|++++|...|++..+.+.. +..+|+.+..+|.+.|++++|+..|++..+.. +-+...|..+-.+|.
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 588999999999999999999998876532 46789999999999999999999999988731 234678899999999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-HhHhhhhHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-EYTYSSMLE 522 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-~~t~~~ll~ 522 (857)
..|++++|.+.|++..+--+.+...|+.+...|.+.|++++|++.|++..+.. |+ ...|..+..
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---------------P~~~~a~~~L~~ 153 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---------------PDFPDAYCNLAH 153 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SCCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCChHHHhhhhh
Confidence 99999999999999887555678899999999999999999999999998854 74 567888889
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~ 542 (857)
++...|++++|.+.+++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 99999999999888887664
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.50 E-value=8.7e-05 Score=84.59 Aligned_cols=123 Identities=15% Similarity=0.113 Sum_probs=71.7
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVE-ASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQA 594 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~-~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~ 594 (857)
.|...+....+.++.+.|..+|... +.. ..+..+|...... +...++.+.|..+|+...+.. .-++..|...+...
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4555555555566777777777777 211 1233344322222 122335777888887766642 12344556666666
Q ss_pred HHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHH
Q 003016 595 IVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALC 646 (857)
Q Consensus 595 ~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~ 646 (857)
...|+.+.|..+|++.. -....|...+.--...|+.+.++.+++...
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777777777762 135566666666666677777777665554
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.45 E-value=8.2e-06 Score=86.33 Aligned_cols=215 Identities=11% Similarity=-0.020 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc---CCCCCC-HHHHHHHHHHHHhcCCH
Q 003016 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED---CNLYPD-IAAYHSVAVTLGQVGLL 280 (857)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi~pd-~~t~~~li~~~~~~g~~ 280 (857)
++++|...|... ...|...|++++|...|.+..+- .|-.++ ..+|+.+..+|...|++
T Consensus 32 ~~~~A~~~~~~a------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 32 KFEEAADLCVQA------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHH------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHH------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCH
Confidence 377777776654 34677889999999999877551 121122 56899999999999999
Q ss_pred HHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003016 281 KELVKLIERMRQKPSKRIKNMHRKNWDPVLEP--DLVVYNAVLNACVPS-HQWKGVFWVFKQLRKSGLKP-SAATYGLAM 356 (857)
Q Consensus 281 ~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p--d~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll 356 (857)
++|+..|++..... ... -.+ -..+|+.+...|... |++++|...|++..+..... +....
T Consensus 94 ~~A~~~~~~Al~l~--------~~~----g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~---- 157 (292)
T 1qqe_A 94 VNAVDSLENAIQIF--------THR----GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS---- 157 (292)
T ss_dssp HHHHHHHHHHHHHH--------HHT----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH----
T ss_pred HHHHHHHHHHHHHH--------HHc----CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH----
Confidence 99999999876531 000 011 145788899999996 99999999999987642111 11110
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTA------SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKP 430 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~------~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~p 430 (857)
..+++.+...|.+.|++++|...|++..+....... ..|..+..++...|++++|...|++... +.|
T Consensus 158 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p 230 (292)
T 1qqe_A 158 ----NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDP 230 (292)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C--
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCC
Confidence 112478899999999999999999998875533221 2577788889999999999999998765 233
Q ss_pred cH------HHHHHHHHHHH--cCCCHHHHHHHHHHHhh
Q 003016 431 LE------ITFTGLIISSM--DGGHIDDCISIFQHMKD 460 (857)
Q Consensus 431 d~------~t~~~ll~a~~--~~g~~~~A~~if~~m~~ 460 (857)
+. ..+..++.+|. ..+++++|...|+.+..
T Consensus 231 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 231 NFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 32 23455666665 56788888888877654
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.43 E-value=7.2e-06 Score=86.76 Aligned_cols=210 Identities=7% Similarity=-0.037 Sum_probs=141.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC----HHHHHHH
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLK--SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----IAAYHSV 270 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----~~t~~~l 270 (857)
...|...|++++|...|............+ ...+|+.+..+|.+.|++++|+..|++..+-..-..+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667888888888888776542211111 1468889999999999999999998877652100012 4578899
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003016 271 AVTLGQV-GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEP-DLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPS 348 (857)
Q Consensus 271 i~~~~~~-g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 348 (857)
...|... |++++|+..|++....... . +..+ ...+|+.+...+.+.|++++|...|++..+......
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~--------~---~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQ--------D---QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHH--------T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHh--------C---CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 9999996 9999999999998763200 0 0000 145688899999999999999999999988654332
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-C---HHHHHHHHHHHH--HCCCHHHHHHHHHHH
Q 003016 349 AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG-T---ASVYYELACCLC--NNGRWQDAMLVVEKI 422 (857)
Q Consensus 349 ~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~-d---~~t~~~lI~~~~--~~g~~~~A~~l~~~m 422 (857)
...|.. ...|..+..+|...|++++|...|++..+..... + ...+..++.+|. ..+++++|+..|+.+
T Consensus 193 ~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 193 LSQWSL------KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp TTGGGH------HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred cccHHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 211000 0013677888999999999999999987643211 1 123445566664 456788898888765
Q ss_pred H
Q 003016 423 K 423 (857)
Q Consensus 423 ~ 423 (857)
.
T Consensus 267 ~ 267 (292)
T 1qqe_A 267 M 267 (292)
T ss_dssp S
T ss_pred C
Confidence 3
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.37 E-value=9.7e-05 Score=77.77 Aligned_cols=179 Identities=12% Similarity=0.054 Sum_probs=128.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 003016 380 AVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS-KPLEITFTGLIISSMDGGHIDDCISIFQHM 458 (857)
Q Consensus 380 A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~a~~~~g~~~~A~~if~~m 458 (857)
|...|++....+ .++..++..+..++...|++++|+.++.+... .+- .-+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778888877665 44555666788889999999999999988755 332 235566788889999999999999999998
Q ss_pred hhCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCC
Q 003016 459 KDHCEP-----NIGTVNAMLKVYS--R--NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQ 529 (857)
Q Consensus 459 ~~~~~p-----~~~~~~~li~~~~--~--~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~ 529 (857)
.+- .| +..+...|..++. . .++..+|..+|+++.... |+..+-..++.++.+.|+
T Consensus 163 ~~~-~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---------------p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 163 TNA-IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---------------PTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp HHH-SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---------------CSHHHHHHHHHHHHHHTC
T ss_pred Hhc-CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---------------CCcccHHHHHHHHHHcCC
Confidence 762 35 2455555655533 2 338999999999987654 664444555557888899
Q ss_pred HHHHHHHHHHHHHc-----CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 530 WEYFEYVYKGMALS-----GC---QL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 530 ~~~a~~l~~~m~~~-----g~---~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
+++|...++.+.+. .- .| |+.+...+|......|+ +|.+++.++.+.
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 99999999876642 11 24 45566566666666776 788888888874
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.32 E-value=0.00013 Score=76.91 Aligned_cols=252 Identities=10% Similarity=0.032 Sum_probs=163.2
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH
Q 003016 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID 449 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~ 449 (857)
-..-.|++..+..-...+.. ......---+..+|...|++... ..-.|....+..+ ..|...+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~----------~~~~~~~~a~~~l-a~~~~~~--- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ----------DPTSKLGKVLDLY-VQFLDTK--- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC----------CSSSTTHHHHHHH-HHHHTTT---
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC----------CCCCHHHHHHHHH-HHHhccc---
Confidence 34456788777763333321 22223344456788888876632 1223443333333 3333433
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC-CCHhHhhhhHHHHHhcC
Q 003016 450 DCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK-PDEYTYSSMLEASATAH 528 (857)
Q Consensus 450 ~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~-pd~~t~~~ll~a~~~~g 528 (857)
|...|++....-.++..++..+...+...|++++|++++.+....+ -. -+...+..++..+.+.|
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-------------~~~~~lea~~l~vqi~L~~~ 150 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-------------EAEGTTELLLLAIEVALLNN 150 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-------------CSTTHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------------CCcCcHHHHHHHHHHHHHCC
Confidence 6677777665334666666788888999999999999999886655 11 14556777888899999
Q ss_pred CHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 003016 529 QWEYFEYVYKGMALSGCQL-----DQTKHAWLLVE--ASRAG--KCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSN 599 (857)
Q Consensus 529 ~~~~a~~l~~~m~~~g~~p-----d~~t~~~Ll~~--~~~~G--~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~ 599 (857)
+.+.|.++++.|.+ ..| +..+...|..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|+
T Consensus 151 r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~ 226 (310)
T 3mv2_B 151 NVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN 226 (310)
T ss_dssp CHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence 99999999999976 456 35555666655 33334 899999999998765 3543333444457888899
Q ss_pred HHHHHHHHHHhhhC-----CC---cc-CHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 003016 600 YEKAVALINAMAYA-----PF---HI-TERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVSNL 660 (857)
Q Consensus 600 ~~~A~~l~~~M~~~-----~~---~p-~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~~~ 660 (857)
+++|...++.+... .. .| +..++..++......|+ .+.+++.++.+. .|+.|.+..+
T Consensus 227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~ 292 (310)
T 3mv2_B 227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHH 292 (310)
T ss_dssp HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHH
Confidence 99999999876532 00 23 33566566555555565 788888888866 4667766655
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.30 E-value=0.0014 Score=74.47 Aligned_cols=354 Identities=11% Similarity=0.058 Sum_probs=198.0
Q ss_pred CCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHH----hc
Q 003016 204 GSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGR-PHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLG----QV 277 (857)
Q Consensus 204 g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~-~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~----~~ 277 (857)
|+.+.+..+|+..+. ..|++..|...+....+.+. .+....+|+......|..| +...|...+.-+. ..
T Consensus 28 ~~~e~~~~iferal~-----~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK-----KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp TCHHHHHHHHHHHST-----TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 667777777776653 23566677776666666553 3445666666665444323 5566666665543 23
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhh--hcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHR--KNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLA 355 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~--k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 355 (857)
|+.+.+..+|++....+....-.++. .-|+ ...+..+...++.... +.+..|..+++.+...--..+..
T Consensus 103 ~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE--~~~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~----- 173 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQTPMGSLSELWKDFENFE--LELNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVK----- 173 (493)
T ss_dssp HHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH--HHHCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHH-----
T ss_pred HHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH--HHhccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHH-----
Confidence 45666777777776543100000000 0000 0001111111221111 22333444444443210000111
Q ss_pred HHHHHHhHHHHHHHHHHHc--CC-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 003016 356 MESYRRCLLKVLVRAFWEE--GK-----INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 428 (857)
Q Consensus 356 l~~~~~~~~~~Li~~y~k~--g~-----~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~ 428 (857)
.|...+..-... |- .+.+..+|+++..... -+...|...+.-+.+.|+.+.|..+|++... .
T Consensus 174 -------~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~-~-- 242 (493)
T 2uy1_A 174 -------NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIE-M-- 242 (493)
T ss_dssp -------HHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H--
T ss_pred -------HHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-C--
Confidence 234444432221 11 3456778888776543 3467788888888999999999999999988 3
Q ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 429 KPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---C----------EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 429 ~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---~----------~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
|....+.. +|+.....++. ++.+... . ......|...+..+-+.+..+.|..+|... ..
T Consensus 243 -P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 243 -SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp -CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred -CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 44332211 22222111111 2222210 0 011356777777777888999999999998 32
Q ss_pred CCCCccccCCCCCCCCCCHhHhh--hhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003016 496 NSSGYTFLSGDGAPLKPDEYTYS--SMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFD 573 (857)
Q Consensus 496 g~~~~~~~~~~~~~~~pd~~t~~--~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~ 573 (857)
. .++...|. +.+... ..++.+.|..+|+...+.- .-++..+...++...+.|+.+.|..+|+
T Consensus 315 ~--------------~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 315 E--------------GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp S--------------CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C--------------CCChHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12333443 222222 2347999999999988752 2234455666777788999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 574 SLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 574 ~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
.+. .....|...+.--...|+.+.+..+++++.
T Consensus 379 r~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 379 RLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 972 257788888887788899999999888864
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.24 E-value=4.7e-05 Score=75.91 Aligned_cols=89 Identities=10% Similarity=0.122 Sum_probs=41.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-HHHHH----------------HHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 403 ACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTG----------------LIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 403 I~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~----------------ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
...+.+.|++++|+..|++.... .|+. ..+.. +-..|.+.|++++|...|+...+..+.+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 34455666777777776666551 2332 12222 3334444444444444444444322333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
...|..+...|...|++++|+..|++...
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444444444444
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.24 E-value=5.2e-05 Score=78.28 Aligned_cols=178 Identities=9% Similarity=-0.005 Sum_probs=130.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC-HHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD-IAA 266 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd-~~t 266 (857)
.+...+......+...|+++.|...|+.+++..+.. .....++..+...|.+.|++++|...|++......-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-EWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 455667777788889999999999999998753321 011678888999999999999999999999874211222 456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHH-----------------HHHH
Q 003016 267 YHSVAVTLGQ--------VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVY-----------------NAVL 321 (857)
Q Consensus 267 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~-----------------~~li 321 (857)
|..+..++.. .|++++|...|++..... +.+...+ ..+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----------------p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY----------------PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC----------------TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC----------------cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888 999999999999988753 1122222 4557
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc----------CCHHHHHHHHHHHhhcC
Q 003016 322 NACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE----------GKINEAVAAVRNMEQRG 391 (857)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~----------g~~~~A~~lf~~m~~~~ 391 (857)
..|.+.|++++|...|+.+.+.. |+..... ..+..+..+|.+. |++++|...|+...+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~--------~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY--PDTPWAD--------DALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTSTTHH--------HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHHHC--CCCchHH--------HHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 77899999999999999998864 3311100 0125677777765 88899999999888765
Q ss_pred C
Q 003016 392 V 392 (857)
Q Consensus 392 ~ 392 (857)
.
T Consensus 226 p 226 (261)
T 3qky_A 226 P 226 (261)
T ss_dssp T
T ss_pred C
Confidence 3
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.24 E-value=8.1e-05 Score=76.81 Aligned_cols=102 Identities=12% Similarity=-0.048 Sum_probs=83.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhh
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPD----IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNM 301 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m 301 (857)
.+...+-.+...+.+.|++++|...|+.+.... |+ ...|..+..+|.+.|++++|...|++......
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p------ 83 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ------ 83 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC------
Confidence 466777788889999999999999999998742 43 67889999999999999999999999987530
Q ss_pred hhhcCCCCCCC-CHHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcC
Q 003016 302 HRKNWDPVLEP-DLVVYNAVLNACVP--------SHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 302 ~~k~f~~~~~p-d~~t~~~li~~~~~--------~g~~~~A~~l~~~m~~~g 344 (857)
-.| ....+..+..++.. .|++++|...|+++.+..
T Consensus 84 --------~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 84 --------IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp --------TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred --------CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 122 24567777778888 999999999999998764
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.18 E-value=0.00013 Score=73.47 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-ITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~a 441 (857)
-.+...+.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|+..|++......-.+.. ..+..+-.+
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 4566778899999999999999987643321 3567788999999999999999999988733222321 233333333
Q ss_pred HH------------------cCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 442 SM------------------DGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 442 ~~------------------~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
+. ..|+.++|...|+.+.+..+-+...+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 33 36789999999999987544444333
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.16 E-value=8.1e-05 Score=74.17 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=120.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNA----------------MLKVYSRNDMFSKAKELFEETTRANSSGY 500 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~----------------li~~~~~~g~~~~A~~lf~~M~~~g~~~~ 500 (857)
.....+...|++++|...|+...+..+.+...|.. +...|.+.|++++|+..|++..+..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---- 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA---- 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----
Confidence 33456678999999999999988733334566666 8889999999999999999998855
Q ss_pred cccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHHH
Q 003016 501 TFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLD-QTKHAWLLVEASRAGK--CHLLEHAFDSLL 576 (857)
Q Consensus 501 ~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd-~~t~~~Ll~~~~~~G~--~~~A~~~~~~m~ 576 (857)
| +...|..+...+...|++++|...|++.++. .|+ ...+..+-..|...|. ...+...++...
T Consensus 85 -----------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~ 151 (208)
T 3urz_A 85 -----------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS 151 (208)
T ss_dssp -----------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred -----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 6 5678888889999999999999999999874 454 5677777777755543 334455555443
Q ss_pred HCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHH
Q 003016 577 EAGEIPHPL--FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTE 624 (857)
Q Consensus 577 ~~gi~p~~~--~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~ 624 (857)
.|+.. .|..+-.++...|++++|+..|++.. ...|+......
T Consensus 152 ----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~ 195 (208)
T 3urz_A 152 ----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKT 195 (208)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHH
T ss_pred ----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHH
Confidence 34433 33444555666799999999999976 45677654433
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.12 E-value=0.00019 Score=72.36 Aligned_cols=171 Identities=11% Similarity=0.054 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH-HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q 003016 314 LVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK-PSA-ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRG 391 (857)
Q Consensus 314 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~-~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~ 391 (857)
...+..+...+.+.|++++|...|+.+.+.... |.. .. +..+..+|.+.|++++|...|++..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a------------~~~lg~~~~~~~~~~~A~~~~~~~l~~~ 71 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQV------------QLDLIYAYYKNADLPLAQAAIDRFIRLN 71 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHH------------HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 445566677789999999999999999886432 211 22 2678889999999999999999998765
Q ss_pred CCCCH--HHHHHHHHHHHH------------------CCCHHHHHHHHHHHHhcCCCCCcHHH---------------HH
Q 003016 392 VVGTA--SVYYELACCLCN------------------NGRWQDAMLVVEKIKSLRHSKPLEIT---------------FT 436 (857)
Q Consensus 392 ~~~d~--~t~~~lI~~~~~------------------~g~~~~A~~l~~~m~~~~g~~pd~~t---------------~~ 436 (857)
..... ..+..+..++.+ .|++++|+..|+++.....-.+.... ..
T Consensus 72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 43221 234444444443 57899999999999873211111110 02
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNI---GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~---~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+...|.+.|++++|...|+.+.+..+.+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 344567889999999999999987443333 568889999999999999999999998866
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.11 E-value=0.0012 Score=69.75 Aligned_cols=224 Identities=8% Similarity=0.010 Sum_probs=161.4
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC--CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH--
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFTEG-QMLKLLKGLGDKG--SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL-- 238 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~~~-t~~~ll~a~~~~g--~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y-- 238 (857)
.+......++|+.++..+.... |+.. .++.--..+...| .+++++..++.++...++ +..+|+.--..+
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk----~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK----NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT----CCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc----cHHHHHHHHHHHHH
Confidence 3444555679999999999865 4444 5677666777778 999999999999876433 666777766666
Q ss_pred --HHc---CChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHcCCChhhhhhhhhcCCCCCC
Q 003016 239 --GKA---GRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK--ELVKLIERMRQKPSKRIKNMHRKNWDPVLE 311 (857)
Q Consensus 239 --~k~---g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~ 311 (857)
.+. +++++++.+++.+.+. -+.|..+|+.-.-.+.+.|.++ ++++.++++.... .
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d----------------~ 177 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD----------------L 177 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC----------------T
T ss_pred HHHhccccCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC----------------C
Confidence 555 7899999999999984 4568899999888888889888 9999999998763 5
Q ss_pred CCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHH-HHHHH
Q 003016 312 PDLVVYNAVLNACVPSHQ------WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINE-AVAAV 384 (857)
Q Consensus 312 pd~~t~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~-A~~lf 384 (857)
.|...|+.-.......+. ++++++.+..+.... |+..+. |+-+-..+.+.|+..+ +..+.
T Consensus 178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~Sa-----------W~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPST-----------WNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHH-----------HHHHHHHHHHTTCCGGGGHHHH
T ss_pred CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccH-----------HHHHHHHHHhcCCChHHHHHHH
Confidence 688889877766666665 777777777777653 433332 4666666667666433 44455
Q ss_pred HHHhhcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 385 RNMEQRG--VVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 385 ~~m~~~~--~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
.+..+.+ -+.+...+..+...|.+.|+.++|+++++.+..
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5544332 133556677777777777777777777777764
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.10 E-value=4.8e-05 Score=80.20 Aligned_cols=165 Identities=11% Similarity=0.019 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+...+..+...+...|++++|...++.+++..+ .+...+..|...|.+.|++++|...|++.... .|+....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P----~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~ 187 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSN----QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQ 187 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHH
Confidence 3445677778888899999999999999987533 37889999999999999999999999998763 4665544
Q ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 268 HSVAV-TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 268 ~~li~-~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
..... .+.+.+..++|...|++..... +.+...+..+...+...|++++|...|.++.+....
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~----------------P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN----------------PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC----------------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 33333 4677788888999999988752 457888999999999999999999999999987433
Q ss_pred CC-HHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 347 PS-AATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 347 pd-~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+ ... +..|...|...|+.++|...|++-
T Consensus 252 ~~~~~a------------~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 252 AADGQT------------RXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp GGGGHH------------HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccchH------------HHHHHHHHHHcCCCCcHHHHHHHH
Confidence 21 223 378899999999999998888764
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.08 E-value=0.00023 Score=74.97 Aligned_cols=213 Identities=13% Similarity=0.050 Sum_probs=141.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHh
Q 003016 178 VRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF---VYTKLLAILGKAGRPHEALRIFNLM 254 (857)
Q Consensus 178 ~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~---~~n~Li~~y~k~g~~~~A~~vf~~m 254 (857)
+..+..-...|+..++..+...+.-.-+ .++.. ....+.. .+...+..+...|++++|..++++.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPII-----HFYEV-------LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTH-----HHHHT-------TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCHH-----HHhCC-------CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3334333346888888777777653221 12211 0111222 3334477889999999999999998
Q ss_pred HHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCC----HHHHHHHHHHHHh
Q 003016 255 LEDCNLYPDI----AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPD----LVVYNAVLNACVP 326 (857)
Q Consensus 255 ~~~~gi~pd~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd----~~t~~~li~~~~~ 326 (857)
.......|+. ..+..+...+...|++++|+..|++...... ..+| ..+|+.+...|..
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~--------------~~~~~~~~~~~~~~lg~~y~~ 167 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL--------------TGIDVYQNLYIENAIANIYAE 167 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC--------------CCSCTTHHHHHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc--------------ccccHHHHHHHHHHHHHHHHH
Confidence 8742223332 2334566777788899999999999987420 1222 3468999999999
Q ss_pred cCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh----cCCCCC-HHHH
Q 003016 327 SHQWKGVFWVFKQLRKS--GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ----RGVVGT-ASVY 399 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~~d-~~t~ 399 (857)
.|++++|...|+++.+. ....+.... ..++..+...|.+.|++++|...+++..+ .+..+. ..+|
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 168 NGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccchhHH--------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999998742 111122221 11248899999999999999999987653 222222 5678
Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHh
Q 003016 400 YELACCLCNNGR-WQDAMLVVEKIKS 424 (857)
Q Consensus 400 ~~lI~~~~~~g~-~~~A~~l~~~m~~ 424 (857)
..+..+|.+.|+ +++|...|++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 888888888884 6888888877654
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.05 E-value=5.5e-05 Score=90.15 Aligned_cols=183 Identities=9% Similarity=-0.034 Sum_probs=126.5
Q ss_pred HHCCCHHHHHHHHHHHH--------hcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 407 CNNGRWQDAMLVVEKIK--------SLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 407 ~~~g~~~~A~~l~~~m~--------~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
...|++++|+..|++.. . ..+.+...+..+..++...|++++|...|+...+..+.+...|..+-.+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56778888888888776 2 1123345667777777888888888888888776445567788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 479 NDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLV 557 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 557 (857)
.|++++|++.|++..+.. | +...|..+-.++...|++++ ...|++..+.. +-+...|..+-.
T Consensus 480 ~g~~~~A~~~~~~al~l~---------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~ 542 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLAR 542 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHH
Confidence 888888888888887754 5 44567777778888888888 88888877642 224567777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC--------HHHHHHHHHHh
Q 003016 558 EASRAGKCHLLEHAFDSLLEAGEIPH-PLFFTEMLIQAIVQSN--------YEKAVALINAM 610 (857)
Q Consensus 558 ~~~~~G~~~~A~~~~~~m~~~gi~p~-~~~~~~li~~~~~~g~--------~~~A~~l~~~M 610 (857)
+|.+.|++++|...|+...+. .|+ ...|..+..++...|. +++|.+.+..+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 888888888888888876653 454 4566666666555443 44555555444
No 105
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.04 E-value=0.00016 Score=76.78 Aligned_cols=127 Identities=7% Similarity=-0.051 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCC-CCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc--
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLK-PDEYTYSSMLEASATAHQWEYFEYVYKGMALS-- 543 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~-pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~-- 543 (857)
.+++.+...|.+ |++++|+..|++....... .+-. --..++..+...+...|++++|...|++..+.
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~---------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN---------EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh---------CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 344555555555 6666666666555442100 0000 01346666666666666666666666665542
Q ss_pred --CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 003016 544 --GCQLDQ-TKHAWLLVEASRAGKCHLLEHAFDSLLEA--GEIPH--PLFFTEMLIQAIVQSNYEKAVA 605 (857)
Q Consensus 544 --g~~pd~-~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~--gi~p~--~~~~~~li~~~~~~g~~~~A~~ 605 (857)
+..+.. ..+..+...+...|++++|...|+... . ..... ......++.++ ..|+.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 111111 144445555566677777777777665 3 11111 11233334433 4566665555
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.04 E-value=0.00044 Score=69.01 Aligned_cols=177 Identities=8% Similarity=-0.063 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcC----ChhHHH
Q 003016 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAG----RPHEAL 248 (857)
Q Consensus 173 ~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g----~~~~A~ 248 (857)
+|+..|+...+.| +...+..+-..|...+++++|...|+...+. .+...+..|-.+|.. + ++++|.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------g~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ------GDGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT------TCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 5667777777765 6777888888888889999999999988764 266788888888887 6 899999
Q ss_pred HHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC-CCHHHHHHHHHH
Q 003016 249 RIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE-PDLVVYNAVLNA 323 (857)
Q Consensus 249 ~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~-pd~~t~~~li~~ 323 (857)
..|++..+. -+..++..|-..|.. .+++++|+.+|++....+ .. .+..++..|-..
T Consensus 74 ~~~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~---------------~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 74 QLAEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS---------------ESDAAVDAQMLLGLI 134 (212)
T ss_dssp HHHHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST---------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC---------------CCcchHHHHHHHHHH
Confidence 999998773 477888888888877 889999999999988765 11 126778888888
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHc-C-----CHHHHHHHHHHHhhcCC
Q 003016 324 CVP----SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEE-G-----KINEAVAAVRNMEQRGV 392 (857)
Q Consensus 324 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~-g-----~~~~A~~lf~~m~~~~~ 392 (857)
|.. .+++++|...|+...+.+- +...+ ..|-.+|.+. | +.++|...|+...+.|.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~~~--~~~a~------------~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSLSR--TGYAE------------YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHTSC--TTHHH------------HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHcCC--CHHHH------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 887 7889999999999987622 22233 5666677654 3 88999999988877664
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.04 E-value=0.0015 Score=69.10 Aligned_cols=219 Identities=7% Similarity=-0.081 Sum_probs=112.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcC--CHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Q 003016 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEG--KINEAVAAVRNMEQRGVVGTASVYYELAC 404 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g--~~~~A~~lf~~m~~~~~~~d~~t~~~lI~ 404 (857)
....++|+.++..++.. .|+..|. |+.--..+...| ++++++..++.+...+... ..+|+.--.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~ta-----------Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-y~aW~~R~~ 111 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTI-----------WIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-YQIWNYRQL 111 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC-CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHH-----------HHHHHHHHHHcccccHHHHHHHHHHHHHHCccc-HHHHHHHHH
Confidence 33446788888888764 5666664 666666666666 7778888877777665443 233554433
Q ss_pred HH----HHC---CCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHH--HHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 405 CL----CNN---GRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHID--DCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 405 ~~----~~~---g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~--~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
.+ ... +++++++.+++.+.. ..+-+..+|+.---.+.+.|..+ ++...++.+.+.-..|...|+.-...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33 333 556666666666655 12233444444444444445544 55555555555444455555554444
Q ss_pred HHhcCC------HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHH-HHHHHHHHHHcC--C
Q 003016 476 YSRNDM------FSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEY-FEYVYKGMALSG--C 545 (857)
Q Consensus 476 ~~~~g~------~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~-a~~l~~~m~~~g--~ 545 (857)
+.+.|. ++++++.++++.... | |...|+.+-..+...|+... +..+..++...+ -
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~---------------p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKC---------------PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHC---------------SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhC---------------CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 444444 555555555555433 3 44455554444444444222 222333222211 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003016 546 QLDQTKHAWLLVEASRAGKCHLLEHAFDSLL 576 (857)
Q Consensus 546 ~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~ 576 (857)
..++.....+...|.+.|+.++|.++++.+.
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1233344444444444455555555555444
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.04 E-value=4.9e-05 Score=73.45 Aligned_cols=158 Identities=11% Similarity=0.040 Sum_probs=103.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-SM 443 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a-~~ 443 (857)
..+...+.+.|++++|...|++..+.+. .+...|..+...|.+.|++++|+..|+..... .|+...+..+... +.
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 4566677888888888888888765442 24566888888888888888888888876542 2233222211111 11
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC---HhHhhhh
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD---EYTYSSM 520 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd---~~t~~~l 520 (857)
..+....|...|+...+..+.+...+..+...|.+.|++++|...|+++.+.. |+ ...+..+
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------------p~~~~~~a~~~l 150 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN---------------LGAQDGEVKKTF 150 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------TTTTTTHHHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC---------------cccChHHHHHHH
Confidence 21222345666666665444467777778888888888888888888777644 43 4466677
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 003016 521 LEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 521 l~a~~~~g~~~~a~~l~~~m~ 541 (857)
...+...|+.++|...|++.+
T Consensus 151 ~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 151 MDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHH
Confidence 777777777777777776654
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.03 E-value=0.00094 Score=70.16 Aligned_cols=168 Identities=12% Similarity=0.026 Sum_probs=115.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH----HHHHHHHHHHcCCCHHHHHHHHHHHhh-C-CCCC----HHHHH
Q 003016 401 ELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI----TFTGLIISSMDGGHIDDCISIFQHMKD-H-CEPN----IGTVN 470 (857)
Q Consensus 401 ~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~----t~~~ll~a~~~~g~~~~A~~if~~m~~-~-~~p~----~~~~~ 470 (857)
..+..+...|++++|..++++........|+.. .+..+...+...|++++|...|..... . -.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999887444445532 344566677788899999999999876 2 2223 34789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 003016 471 AMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALS----GC 545 (857)
Q Consensus 471 ~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~ 545 (857)
.+...|...|++++|+..|++....-.. .....+.. .+|..+...|...|++++|...+++.++. +.
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~ 231 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEA--------LHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH--------SSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHh--------cccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999999999999999998742100 00012222 36777778888888888888888776642 22
Q ss_pred CCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 003016 546 QLD-QTKHAWLLVEASRAGK-CHLLEHAFDSLL 576 (857)
Q Consensus 546 ~pd-~~t~~~Ll~~~~~~G~-~~~A~~~~~~m~ 576 (857)
.+. ..+|..+-..|.+.|+ +++|.+.|+...
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 222 4466666666777773 577777766543
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.02 E-value=7.4e-05 Score=78.73 Aligned_cols=164 Identities=6% Similarity=-0.103 Sum_probs=102.8
Q ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCC
Q 003016 431 LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPL 510 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~ 510 (857)
+...+..+-..+...|++++|...|+......+.+...+..+...|.+.|++++|...+++.....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------------- 181 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------------- 181 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--------------
Confidence 334455566666677777777777777766444566777777777777777777777777765533
Q ss_pred CCCHhHhhhhH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 003016 511 KPDEYTYSSML-EASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGE-IPHPLFFT 588 (857)
Q Consensus 511 ~pd~~t~~~ll-~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi-~p~~~~~~ 588 (857)
|+........ ..+...++.+.|...+++..... +.+...+..+...|...|++++|...|..+....- ..+...+.
T Consensus 182 -p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 182 -QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 5443322222 22445566666666676666532 23455666777777777777777777777766421 11245667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHh
Q 003016 589 EMLIQAIVQSNYEKAVALINAM 610 (857)
Q Consensus 589 ~li~~~~~~g~~~~A~~l~~~M 610 (857)
.+...+...|+.++|...+++-
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHH
Confidence 7777777777777777766653
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.02 E-value=5e-05 Score=73.34 Aligned_cols=156 Identities=10% Similarity=0.002 Sum_probs=89.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhH
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYT 516 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t 516 (857)
.....+...|++++|...|+...+..+.+...|..+...|.+.|++++|...|++..... |+..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---------------p~~~- 74 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---------------QDNS- 74 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---------------CCHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---------------CChH-
Confidence 334455566666666666666554333456667777777777777777777777665433 4322
Q ss_pred hhhhHHHH--HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 003016 517 YSSMLEAS--ATAHQWEYFEYVYKGMALSGCQL-DQTKHAWLLVEASRAGKCHLLEHAFDSLLEAGEI-PHPLFFTEMLI 592 (857)
Q Consensus 517 ~~~ll~a~--~~~g~~~~a~~l~~~m~~~g~~p-d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~-p~~~~~~~li~ 592 (857)
+..+...+ ...+....+...+++..+. .| +...+..+...+...|++++|...|+.+.+..-. .+...+..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 75 YKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 22221111 1111222345666666542 34 3556666666677777777777777776664321 12456666667
Q ss_pred HHHHcCCHHHHHHHHHHh
Q 003016 593 QAIVQSNYEKAVALINAM 610 (857)
Q Consensus 593 ~~~~~g~~~~A~~l~~~M 610 (857)
.+...|+.++|...|++.
T Consensus 153 ~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHCSSCHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHH
Confidence 777777777777777654
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.00 E-value=0.00011 Score=87.66 Aligned_cols=178 Identities=13% Similarity=-0.057 Sum_probs=120.6
Q ss_pred HhcCCHHHHHHHHHHHHhCc----CCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh
Q 003016 201 GDKGSWRQAMSVLDWVYGLK----DKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ 276 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~----~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~ 276 (857)
...|++++|.+.++.++... ....+.+...+..+...|.+.|++++|...|++..+. -+.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56788888888888876110 0112235677778888888888888888888887763 12356788888888888
Q ss_pred cCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003016 277 VGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAM 356 (857)
Q Consensus 277 ~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 356 (857)
.|++++|...|++..+.. +-+...|..+-.++.+.|++++ .+.|++..+.. |+....
T Consensus 480 ~g~~~~A~~~~~~al~l~----------------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a---- 536 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF----------------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISA---- 536 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS----------------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHH----
T ss_pred cCCHHHHHHHHHHHHHhC----------------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHH----
Confidence 888888888888887642 3356677778888888888888 88888887653 433221
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR 411 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~ 411 (857)
|..+..+|.+.|++++|...|++..+.+.. +...|..+..++...++
T Consensus 537 -------~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 537 -------AFGLARARSAEGDRVGAVRTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred -------HHHHHHHHHHcCCHHHHHHHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 367777888888888888888877654421 23455556666555444
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.00 E-value=0.00012 Score=85.26 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
.|++++|...|++..+.+. .+...|..+...|.+.|++++|...|++..+. .+.+...+..+-..|...|++++|..
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3677888888888765542 24667888888888889999999888888762 23346677888888888888888888
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc---CC
Q 003016 454 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA---HQ 529 (857)
Q Consensus 454 if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~---g~ 529 (857)
.|++..+..+.+...|..+..+|.+.|++++|.+.|++..+.. | +...+..+...+... |+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL---------------PEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHhhcccc
Confidence 8888877555567888888888888888888888888887754 5 456677777788888 88
Q ss_pred HHHHHHHHHHHHHcC
Q 003016 530 WEYFEYVYKGMALSG 544 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g 544 (857)
.++|.+.+++..+.+
T Consensus 144 ~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 888888888887643
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.00 E-value=0.00024 Score=75.42 Aligned_cols=177 Identities=10% Similarity=-0.048 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc---CCCCC-CHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK--SRFVYTKLLAILGKAGRPHEALRIFNLMLED---CNLYP-DIAA 266 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~--~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~gi~p-d~~t 266 (857)
|......|...|+++.|...|.+..........+ -..+|+.+...|.+.|++++|+..|++..+- .|-.. -..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445566777888888888888776543221111 1357788888888888988888888876541 11111 1356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 003016 267 YHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLK 346 (857)
Q Consensus 267 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 346 (857)
|+.+...|.. |++++|+..|++..... ... .....-..+++.+...|.+.|++++|...|++..+....
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~--------~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVF--------ENE--ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHH--------HHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHH--------HhC--CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7777788877 88888888888776431 000 000001456777777888888888888888877653110
Q ss_pred -CCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 347 -PSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 347 -pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
++.... ...+..+...|...|++++|...|++..
T Consensus 188 ~~~~~~~--------~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 188 MENYPTC--------YKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCChhHH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 111100 0013556666666777777777777765
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.99 E-value=0.00012 Score=85.13 Aligned_cols=155 Identities=10% Similarity=-0.053 Sum_probs=117.9
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHH
Q 003016 168 REMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEA 247 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A 247 (857)
.|.+++|...|++..+.. +-+...+..+...+...|++++|...++..++.. +.+..+|..+...|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH----PGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356788888888877653 3356788889999999999999999999998753 23788999999999999999999
Q ss_pred HHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhc
Q 003016 248 LRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPS 327 (857)
Q Consensus 248 ~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~ 327 (857)
...|++..+. -+.+...|..+..+|.+.|++++|.+.|++..+.. +.+...+..+...+...
T Consensus 77 ~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 77 AVLLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL----------------PEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHh
Confidence 9999998874 23457899999999999999999999999998753 44678888999999999
Q ss_pred ---CChHHHHHHHHHHHHcCC
Q 003016 328 ---HQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 328 ---g~~~~A~~l~~~m~~~g~ 345 (857)
|++++|.+.+++..+.+.
T Consensus 139 ~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 139 CDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp TCCTTHHHHHHHHHHHHHHTC
T ss_pred hccccHHHHHHHHHHHHhcCC
Confidence 999999999999988653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.98 E-value=0.00021 Score=70.77 Aligned_cols=126 Identities=11% Similarity=0.075 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD 444 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~ 444 (857)
..+...|...|++++|...|++.. .|+...|..+..+|.+.|++++|+..|++.... .+.+...+..+-.+|..
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 567778889999999999999874 457788999999999999999999999998873 24456788899999999
Q ss_pred CCCHHHHHHHHHHHhhCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 445 GGHIDDCISIFQHMKDHCEPNI----------------GTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 445 ~g~~~~A~~if~~m~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.|++++|...|+...+..+.+. ..|..+..+|.+.|++++|.+.|++.....
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999987433333 788999999999999999999999998754
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.98 E-value=0.00049 Score=68.66 Aligned_cols=174 Identities=10% Similarity=-0.081 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC----CHHHH
Q 003016 208 QAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG----LLKEL 283 (857)
Q Consensus 208 ~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g----~~~~A 283 (857)
+|.+.|....+. .+...+..|-.+|...+++++|...|++..+. -+...+..|-..|.. + ++++|
T Consensus 4 eA~~~~~~aa~~------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHC------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 356666666543 27778888888999999999999999998874 477888888888887 6 89999
Q ss_pred HHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003016 284 VKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVP----SHQWKGVFWVFKQLRKSGLKP-SAATYGLAMES 358 (857)
Q Consensus 284 ~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~~ 358 (857)
..+|++....| +..++..|-..|.. .+++++|+..|+...+.|... +...+
T Consensus 73 ~~~~~~A~~~g------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~------ 128 (212)
T 3rjv_A 73 RQLAEKAVEAG------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQ------ 128 (212)
T ss_dssp HHHHHHHHHTT------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHH------
T ss_pred HHHHHHHHHCC------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHH------
Confidence 99999987654 56677777777776 789999999999988776421 12333
Q ss_pred HHHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHh
Q 003016 359 YRRCLLKVLVRAFWE----EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNN-G-----RWQDAMLVVEKIKS 424 (857)
Q Consensus 359 ~~~~~~~~Li~~y~k----~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~-g-----~~~~A~~l~~~m~~ 424 (857)
..|-.+|.. .++.++|...|++..+.+ .+...+..|...|... | +.++|...|+...+
T Consensus 129 ------~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 129 ------MLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp ------HHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 677778877 788999999998887762 2223466666666653 3 78888888887766
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.98 E-value=0.00021 Score=70.77 Aligned_cols=133 Identities=11% Similarity=-0.029 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCC
Q 003016 229 FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDP 308 (857)
Q Consensus 229 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~ 308 (857)
..+..+...|...|++++|...|++.. .|+...|..+...|...|++++|...|++.....
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 67 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------------- 67 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------
Confidence 345566677788899999999888774 3688888888899999999999999998887642
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHHhHHHHHHHHHHHc
Q 003016 309 VLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGL--------------KPSAATYGLAMESYRRCLLKVLVRAFWEE 374 (857)
Q Consensus 309 ~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--------------~pd~~t~~~ll~~~~~~~~~~Li~~y~k~ 374 (857)
+.+...|..+..++...|++++|...|+...+... .|+.... +..+...|.+.
T Consensus 68 --~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~ 134 (213)
T 1hh8_A 68 --KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV-----------LYNIAFMYAKK 134 (213)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH-----------HHHHHHHHHHT
T ss_pred --ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH-----------HHHHHHHHHHc
Confidence 44677888888888899999999999988887532 2222221 47888899999
Q ss_pred CCHHHHHHHHHHHhhcCCC
Q 003016 375 GKINEAVAAVRNMEQRGVV 393 (857)
Q Consensus 375 g~~~~A~~lf~~m~~~~~~ 393 (857)
|++++|...|+...+....
T Consensus 135 g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 135 EEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TCHHHHHHHHHHHHTTCCS
T ss_pred cCHHHHHHHHHHHHHcCcc
Confidence 9999999999998876543
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.94 E-value=0.0007 Score=71.18 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=116.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHhhC----CCCC--HHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE----ITFTGLIISSMDGGHIDDCISIFQHMKDH----CEPN--IGT 468 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~if~~m~~~----~~p~--~~~ 468 (857)
+...+..+...|++++|...+.+........++. ..+..+...+...|++++|...|...... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 4455667788888888888888776622222221 22344556677888999999999887652 1222 558
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-----HhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-----EYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
|+.+...|...|++++|+..|++...... ..|+ ..+|..+...|...|++++|...+++..+.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~------------~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLE------------ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------HSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------------hcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999998873210 1122 257888888899999999999999887653
Q ss_pred C----CCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 003016 544 G----CQLD-QTKHAWLLVEASRAGKCHLL-EHAFDSLL 576 (857)
Q Consensus 544 g----~~pd-~~t~~~Ll~~~~~~G~~~~A-~~~~~~m~ 576 (857)
. .... ..+|..+-..|.+.|+.++| ...++...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 1111 45677777778888888888 66666543
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.90 E-value=0.00033 Score=61.94 Aligned_cols=99 Identities=16% Similarity=0.251 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...+...|++++|...|.++... .+.+..++..+...+...|++++|..+|+.+....+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 445777777888888888888888887762 233556777778888888888888888888877555677888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|...|+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 888899999999988887754
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.89 E-value=0.00068 Score=71.26 Aligned_cols=174 Identities=9% Similarity=-0.047 Sum_probs=124.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC--HHH
Q 003016 158 IRVLVDRLSEREMTAKNWKFVRIMNQSGLMFT-E----GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS--RFV 230 (857)
Q Consensus 158 ~~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~-~----~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~--~~~ 230 (857)
+...+..+...|.+++|...+....+...... . ..+..+...+...|+++.|...+...+........+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34456677889999999999988876542211 1 1233455556778999999999999886543322222 458
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHhH---HcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 231 YTKLLAILGKAGRPHEALRIFNLML---EDCNLYP--DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 231 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~~gi~p--d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
|+.+...|...|++++|...|++.. +..+-.+ ...+|+.+...|...|++++|+..+++..... ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~--------~~~ 229 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--------CRI 229 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------HHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH--------Hhc
Confidence 9999999999999999999999887 3211111 12688999999999999999999999876531 000
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGV-FWVFKQLR 341 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A-~~l~~~m~ 341 (857)
.....-..+|..+...|.+.|++++| ...++...
T Consensus 230 --~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 230 --NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp --TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 00111267788899999999999999 77677654
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.87 E-value=0.00038 Score=61.49 Aligned_cols=98 Identities=14% Similarity=0.122 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+..+...+...|+++.|...++.+++.. +.+..++..+...|.+.|++++|...|+++... .+.+..+|..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHH
Confidence 4567778888888999999999999887652 236788888999999999999999999988773 2346788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+...|...|++++|...|+++...
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.83 E-value=0.00051 Score=64.55 Aligned_cols=128 Identities=11% Similarity=0.051 Sum_probs=105.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
|..+...|...|++++|...|++..+... .+..+|..+..++...|++++|...|.+.... .+.+..++..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 47788889999999999999999887653 35778899999999999999999999998873 2345678888889999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNA--MLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~--li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
..|++++|...|+...+..+.+...+.. +...+.+.|++++|++.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999998754456666644 44447788999999999987654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.81 E-value=0.00047 Score=64.79 Aligned_cols=128 Identities=9% Similarity=-0.027 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..|..+...+...|++++|...|.+.... .+.+..++..+...+...|++++|...|+...+..+.+...|..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34777788888899999999999888762 2335667778888888889999999998888775556778888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhh--hhHHHHHhcCCHHHHHHHHHHHH
Q 003016 477 SRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYS--SMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~--~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
.+.|++++|...|++..... | +...+. .....+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~---------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK---------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 89999999999998888754 4 233332 23333555677777777666543
No 125
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.78 E-value=7.5e-05 Score=70.16 Aligned_cols=58 Identities=10% Similarity=0.004 Sum_probs=25.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+-..|.+.|++++|...|+...+-.+.+..+|..+..+|.+.|++++|+..|++..+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3334444444444444444444432223344444444444444444444444444444
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.78 E-value=0.011 Score=63.29 Aligned_cols=230 Identities=12% Similarity=0.007 Sum_probs=158.0
Q ss_pred HHHHHH-HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHH
Q 003016 159 RVLVDR-LSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKG-SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLA 236 (857)
Q Consensus 159 ~~l~~~-l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g-~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~ 236 (857)
...+.. +...+..++|++++..+.... +-+..+++.--..+...| .+++++.+++.++... +.+..+|+.--.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n----PKny~aW~hR~w 131 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN----LKSYQVWHHRLL 131 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT----CCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC----CCcHHHHHHHHH
Confidence 333343 444556689999999999876 234445676666666777 5999999999998753 348889999888
Q ss_pred HHHHc-C-ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHcCCChhhhhhhhhcC
Q 003016 237 ILGKA-G-RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLK--------ELVKLIERMRQKPSKRIKNMHRKNW 306 (857)
Q Consensus 237 ~y~k~-g-~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~~l~~m~~k~f 306 (857)
.+.+. + ++++++.+++.+.+. -+.|..+|+.-.-.+.+.|.++ ++++.++++.+.
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~------------- 196 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV------------- 196 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-------------
Confidence 88887 7 899999999999873 3568888988776666666665 899999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCH--
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQ-------WKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKI-- 377 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~-- 377 (857)
-..|...|+.......+.+. ++++++.+..+... .|+..+. |+-+-..+.+.|+-
T Consensus 197 ---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~Sa-----------W~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 197 ---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSA-----------WNYLRGFLKHFSLPLV 260 (349)
T ss_dssp ---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHTTCCSG
T ss_pred ---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHH-----------HHHHHHHHHhcCCCcc
Confidence 35688899988888887776 67888888888775 4544432 46666666665543
Q ss_pred ------------------HHHHHHHHHHhhcC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 003016 378 ------------------NEAVAAVRNMEQRG-----VVGTASVYYELACCLCNNGRWQDAMLVVEKIKS 424 (857)
Q Consensus 378 ------------------~~A~~lf~~m~~~~-----~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~ 424 (857)
........++...+ -++....+..|+..|...|+.++|.++++.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22223333332221 134555666666777777777777777776654
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.78 E-value=0.00038 Score=68.08 Aligned_cols=159 Identities=11% Similarity=0.002 Sum_probs=92.6
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLE 522 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~ 522 (857)
..|++++|.++++.+.........+++.+...|...|++++|...|++...... ..+..| ...++..+-.
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQ---------KSGDHTAEHRALHQVGM 74 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH---------HcCCcHHHHHHHHHHHH
Confidence 456666666644444332223456667777777777777777777776654210 000111 3345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 003016 523 ASATAHQWEYFEYVYKGMALS----GCQL--DQTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIP-HPLFFTEML 591 (857)
Q Consensus 523 a~~~~g~~~~a~~l~~~m~~~----g~~p--d~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p-~~~~~~~li 591 (857)
.+...|++++|...+.+.... +-.| ....+..+-..+...|++++|...++...+. +-.. -..++..+.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 154 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG 154 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 777777877777777766543 2111 1235566666677788888888888766542 1111 123356666
Q ss_pred HHHHHcCCHHHHHHHHHHhh
Q 003016 592 IQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 592 ~~~~~~g~~~~A~~l~~~M~ 611 (857)
..+...|++++|...+++..
T Consensus 155 ~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 155 DLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHH
Confidence 77777888888888877753
No 128
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.78 E-value=7.3e-05 Score=70.27 Aligned_cols=127 Identities=9% Similarity=0.017 Sum_probs=98.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCC
Q 003016 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG 446 (857)
Q Consensus 367 Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g 446 (857)
|-.+|...|++++|...++........ +...+-.+...|.+.|++++|+..|++..+. .+-+..++..+-..|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 334556678899999999887653211 1224667888999999999999999999873 2345678999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcC
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL-FEETTRAN 496 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l-f~~M~~~g 496 (857)
++++|...|+...+-.+.+...|..+...|.+.|+.++|.+. +++..+..
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 999999999999885556789999999999999999877665 57777743
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.75 E-value=0.00084 Score=69.67 Aligned_cols=199 Identities=11% Similarity=0.012 Sum_probs=137.6
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHcCC
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAV-------LNACVPSHQWKGVFWVFKQLRKSGL 345 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~ 345 (857)
++ +.++...|.+.|.+..... +-....|+.+ ...+.+.+...+++..+..-. ++
T Consensus 16 ~~-~~~d~~~A~~~F~~a~~~d----------------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l--~l 76 (282)
T 4f3v_A 16 SM-LPMSEARSLDLFTEITNYD----------------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV--QI 76 (282)
T ss_dssp HH-TTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT--TC
T ss_pred cc-cCCCHHHHHHHHHHHHHhC----------------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 45 6899999999999998753 4467788877 344444444444444333333 33
Q ss_pred CCCHHHHHHH-HHHH---------HHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHH
Q 003016 346 KPSAATYGLA-MESY---------RRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDA 415 (857)
Q Consensus 346 ~pd~~t~~~l-l~~~---------~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A 415 (857)
.|+......- ...| ....+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHH
Confidence 3322110000 0000 00012456778889999999999999988755 4333556666789999999999
Q ss_pred HHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCC-CC--HHHHHHHHHHHHhcCCHHHHHHH
Q 003016 416 MLVVEKIKSLRHSKPL----EITFTGLIISSMDGGHIDDCISIFQHMKDHCE-PN--IGTVNAMLKVYSRNDMFSKAKEL 488 (857)
Q Consensus 416 ~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~l 488 (857)
+..|..... .|+ ...+..+-.++...|++++|...|++...+-. |. ...+.....++.+.|+.++|..+
T Consensus 155 ~~~l~~a~~----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~ 230 (282)
T 4f3v_A 155 IDQVKSAGK----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL 230 (282)
T ss_dssp HHHHTTGGG----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhc----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999985543 232 23577778889999999999999999987532 53 44677788889999999999999
Q ss_pred HHHHHHcC
Q 003016 489 FEETTRAN 496 (857)
Q Consensus 489 f~~M~~~g 496 (857)
|+++....
T Consensus 231 l~~a~a~~ 238 (282)
T 4f3v_A 231 LEWLQTTH 238 (282)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 99999865
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.75 E-value=0.00032 Score=68.58 Aligned_cols=136 Identities=11% Similarity=-0.029 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhh------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKD------HCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGD 506 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~------~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~ 506 (857)
.++..+-..+...|++++|...++.... .......+++.+...|...|++++|.+.|.+.......
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------- 98 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS-------- 98 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------
Confidence 3444444455555555555555554443 01123456777888888999999999999887654100
Q ss_pred CCCCCC--CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 507 GAPLKP--DEYTYSSMLEASATAHQWEYFEYVYKGMALS----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 507 ~~~~~p--d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
.+-.| ....+..+-..+...|++++|...+++.... +.... ..++..+...|...|++++|.+.++...+
T Consensus 99 -~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 99 -LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp -SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 00011 2345777778888899999999999987743 21111 23456777778999999999999887654
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.72 E-value=0.00078 Score=60.46 Aligned_cols=101 Identities=7% Similarity=-0.023 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+...|..+...+.+.|++++|...|++... ..+.+...+..+...|...|++++|...|+...+..+.+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3456788888999999999999999999876 22346677888888899999999999999998875556788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 003016 474 KVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..|.+.|++++|.+.|++.....
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999999999999999988754
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.72 E-value=0.00053 Score=61.14 Aligned_cols=99 Identities=9% Similarity=-0.028 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+.......+.+...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777777777777777777652 223456667777777778888888888877776444567777888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|...|++.....
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 888888888888888877644
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.71 E-value=0.00069 Score=60.38 Aligned_cols=120 Identities=10% Similarity=-0.019 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYH 268 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~ 268 (857)
+...+..+...+...|+++.|...++.++... +.+..++..+...|...|++++|...|...... .+.+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHH
Confidence 34466677777888899999999998887642 236778888888899999999999999888763 234577888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCCh
Q 003016 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQW 330 (857)
Q Consensus 269 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~ 330 (857)
.+...|...|++++|...|++..... +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~----------------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD----------------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS----------------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC----------------ccchHHHHHHHHHHHHHhcC
Confidence 88889999999999999998887642 34667777777777766654
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.70 E-value=0.00053 Score=71.82 Aligned_cols=191 Identities=6% Similarity=0.007 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...+..+...+.+.|++++|+..|.+.... .+.+...+..+-..|.+.|++++|...++...+..+.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445667777778888888888888877662 122556677777778888888888888887776555667788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003016 476 YSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAW 554 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~ 554 (857)
|...|++++|...|.+..... |+. ..+...+...... ..+. -+..........+......
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---------------p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~ 142 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---------------KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSY 142 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---------------HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---------------ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHH
Confidence 888888888888888877643 422 1222222222211 1111 1122222333444443333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHhh
Q 003016 555 LLVEASRAGKCHLLEHAFDSLLEAGEIPHPL-FFTEMLIQAIVQ-SNYEKAVALINAMA 611 (857)
Q Consensus 555 Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~-~~~~li~~~~~~-g~~~~A~~l~~~M~ 611 (857)
+-. + ..|+.++|.+.++...+. .|+.. ....+-..+.+. +.+++|.++|.+..
T Consensus 143 l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 143 LTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp HHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 322 2 246667777666655442 34432 222332223333 55667777777654
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.65 E-value=0.016 Score=62.07 Aligned_cols=226 Identities=9% Similarity=-0.041 Sum_probs=158.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcC-C-
Q 003016 370 AFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNG-RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDG-G- 446 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~-g- 446 (857)
...+.+..++|+++++.+...+.. +..+|+.--..+...| .+++++.+++.+.. ..+-+..+|+.--..+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCC
Confidence 334445567889999999887644 4556888777788888 59999999999987 3334555666555555554 5
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhh
Q 003016 447 HIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFS--------KAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYS 518 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~ 518 (857)
..+++..+++.+.+..+.|...|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------p~N~SAW~ 205 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------GRNNSAWG 205 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--------------TTCHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--------------CCCHHHHH
Confidence 7899999999999877889999988777776666666 9999999999865 23777888
Q ss_pred hhHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHH
Q 003016 519 SMLEASATAHQ-------WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKC--------------------HLLEHA 571 (857)
Q Consensus 519 ~ll~a~~~~g~-------~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~--------------------~~A~~~ 571 (857)
..-..+.+.+. ++++++.+.+++... +-|...++.+-..+.+.|+. .....+
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 88777777775 688888888887643 33566777666666666653 222222
Q ss_pred HHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC
Q 003016 572 FDSLLEAG-----EIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYA 613 (857)
Q Consensus 572 ~~~m~~~g-----i~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~ 613 (857)
...+...+ -.++...+..|.+.|...|+.++|.++++.+...
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222211 1356777778888888888888888888887543
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.64 E-value=0.00037 Score=66.90 Aligned_cols=122 Identities=9% Similarity=0.077 Sum_probs=98.5
Q ss_pred HHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH-HHcCCCH--
Q 003016 372 WEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIIS-SMDGGHI-- 448 (857)
Q Consensus 372 ~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a-~~~~g~~-- 448 (857)
...|++++|...|+.....+. .+...|..+...|...|++++|...|++..... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 356888899999988776653 356789999999999999999999999988732 2355677777777 7789998
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 449 DDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 449 ~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
++|...|+......+.+...|..+...|...|++++|...|++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999988555678899999999999999999999999998854
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.63 E-value=0.00067 Score=60.89 Aligned_cols=100 Identities=15% Similarity=-0.007 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAY 267 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~ 267 (857)
.+...+..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++|...|++..+. .+.+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 87 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGY 87 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHH
Confidence 344566677777777888888888888776542 236677777888888888888888888877763 22356777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 268 HSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 268 ~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
..+..++.+.|++++|...|++....
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77888888888888888888877654
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.60 E-value=0.001 Score=71.68 Aligned_cols=129 Identities=14% Similarity=0.097 Sum_probs=110.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
|..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.... .+
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 227 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DS 227 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 47888899999999999999999887654332 578999999999999999999999999873 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKA-KELFEETTR 494 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A-~~lf~~M~~ 494 (857)
.+...+..+-.+|...|++++|...|+...+-.+.+...+..+..++.+.|+.++| ..+|..|..
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999885566788999999999999999998 556666643
No 139
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.59 E-value=0.0016 Score=58.99 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
.|......|.+.|++++|+..|++..+. .+.+..+|..+-.+|.+.|++++|...|+...+--+.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4556667777888888888888877652 23456677777778888888888888888877644566788888888888
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 003016 478 RNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~~g 496 (857)
..|++++|++.|++..+..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 8888888888888888744
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.58 E-value=0.0013 Score=61.83 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=53.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP- 512 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p- 512 (857)
.+..+-..+.+.|++++|...|+.....-+.+...|..+..+|.+.|++++|+..|++..... |
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---------------P~ 102 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---------------KN 102 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------SS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---------------CC
Confidence 344445555556666666666665555334455556666666666666666666666655533 4
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+...|..+-.+|...|++++|...|++.++
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234555555555566666666666665554
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.51 E-value=0.00092 Score=62.83 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...+.+.|++++|+..|++.... -+-+...|..+-.+|...|++++|...|+...+-.+.+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 346777888899999999999999998873 234567788888999999999999999999988555678889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|...|++.....
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998855
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.48 E-value=0.0006 Score=63.77 Aligned_cols=99 Identities=15% Similarity=0.043 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...+..+...+.+.|++++|+..|+..... .+.+...+..+-.+|...|++++|...|+......+.+...|..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445777888899999999999999998762 234667788888899999999999999999887555677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|...|++++|.+.|++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999988744
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.47 E-value=0.0023 Score=68.91 Aligned_cols=131 Identities=12% Similarity=0.108 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-------------EITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-------------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
...|..+...|.+.|++++|+..|++........++ ..++..+-.+|.+.|++++|...|+...+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 345788888999999999999999998873211110 4678888888889999999999999888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHH-HHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYF-EYVYKGM 540 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a-~~l~~~m 540 (857)
+.+...|..+..+|...|++++|+..|++..+.. | +...+..+..++...|+.+++ ..+|+.|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---------------PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888999999999999999999888754 5 445666777777777777777 3455555
Q ss_pred H
Q 003016 541 A 541 (857)
Q Consensus 541 ~ 541 (857)
.
T Consensus 292 ~ 292 (336)
T 1p5q_A 292 F 292 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.47 E-value=0.00077 Score=64.61 Aligned_cols=122 Identities=9% Similarity=0.025 Sum_probs=97.8
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHH-HHHcCCh
Q 003016 166 SEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAI-LGKAGRP 244 (857)
Q Consensus 166 ~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~-y~k~g~~ 244 (857)
...|.+++|...+....... +.+...+..+...|...|+++.|...++.+++..+ .+..++..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG----ENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHhcCCc
Confidence 34566777888888776654 34677888999999999999999999999987643 367888888888 8899998
Q ss_pred --hHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC
Q 003016 245 --HEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP 294 (857)
Q Consensus 245 --~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 294 (857)
++|...|+...+. .+.+...|..+...|...|++++|...|++.....
T Consensus 96 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 96 MTAQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999874 23357889999999999999999999999998753
No 145
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.46 E-value=0.0027 Score=57.41 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=89.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSM 443 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~ 443 (857)
+..+-..|.+.|++++|...|++..+.+. .+..+|..+..+|.+.|++++|+..|++..+. -+.+...|..+-.+|.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHH
Confidence 47788899999999999999999887763 36778999999999999999999999998873 2345678899999999
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
..|++++|...|+...+-.+.+...+..|-
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 999999999999999874445566655543
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.46 E-value=0.00082 Score=62.80 Aligned_cols=96 Identities=9% Similarity=0.011 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g 544 (857)
...+..+...+.+.|++++|...|++..... | +...|..+-.+|...|++++|...|++.+...
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---------------HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3445555555666666666666666655533 3 44455555555566666666666666655432
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 545 CQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
+-+...+..+-.+|...|++++|...|+...+
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11334555555556666666666666665544
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.003 Score=56.57 Aligned_cols=95 Identities=5% Similarity=-0.044 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYS 477 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~ 477 (857)
.|..+...+.+.|++++|+..|.+.... .+.+...+..+-.+|.+.|++++|...|+...+..+.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4566666777777777777777776652 23345667777777777788888888777777644556777888888888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 003016 478 RNDMFSKAKELFEETTR 494 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~ 494 (857)
..|++++|...|++...
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 88888888888887766
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.42 E-value=0.0033 Score=54.60 Aligned_cols=98 Identities=12% Similarity=0.016 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...++......+.+...|..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666667777777777777776652 1234555666666677777777777777776664445677777777788
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
.+.|++++|.+.|++.....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 88888888888888777643
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.42 E-value=0.0046 Score=53.68 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHS 269 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~ 269 (857)
...+..+...+...|+++.|...++..+... +.+..++..+...|.+.|++++|...|++.... .+.+...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD----PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 4566677778888899999999999887643 236788888888999999999999999988773 2235788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 270 VAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 270 li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+..++...|++++|...|++....
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc
Confidence 889999999999999999988775
No 150
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.42 E-value=0.00037 Score=72.36 Aligned_cols=128 Identities=13% Similarity=0.020 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQ 546 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~ 546 (857)
..+-.....+...|++++|.++|..+...+ |+....-.+-..+.+.+++++|+..|+.... .
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---------------p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~ 164 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAG---------------SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---W 164 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---------------CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---C
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---c
Confidence 344556777889999999999999887654 7555555555678888999999999985433 2
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 003016 547 LDQ----TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPH--PLFFTEMLIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 547 pd~----~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~--~~~~~~li~~~~~~g~~~~A~~l~~~M~~ 612 (857)
|+. ..+..+-.++...|++++|+..|++.......|. ...+...-.++.+.|+.++|..+|+++..
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 332 3677777889999999999999999875443254 33556667778888999999999999864
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.42 E-value=0.0013 Score=56.82 Aligned_cols=99 Identities=12% Similarity=-0.051 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+|..+...|.+.|++++|...|++..+. .+.+...|..+...+...|++++|...|++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------- 70 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI------------- 70 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 345666666777777777777777776653 12356677777777777777777777777776642
Q ss_pred CCCCC--CHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcC
Q 003016 308 PVLEP--DLVVYNAVLNACVPS-HQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 308 ~~~~p--d~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g 344 (857)
+. +...|..+...+... |++++|.+.+....+..
T Consensus 71 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 71 ---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp ---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred ---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 22 466777777777777 77777777777776654
No 152
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.05 Score=59.89 Aligned_cols=268 Identities=10% Similarity=-0.049 Sum_probs=167.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHhhcCCCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 368 VRAFWEEGKINEAVAAVRNMEQRGVVGT----------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 368 i~~y~k~g~~~~A~~lf~~m~~~~~~~d----------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
...+.+.|++++|.+.|....+...... ...+..+...|.+.|++++|.+.+.......+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999876543211 124677899999999999999999887653333333
Q ss_pred HHH----HHHHHHHHHcCCCHHHHHHHHHHHhh-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Q 003016 432 EIT----FTGLIISSMDGGHIDDCISIFQHMKD-----HCEP-NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYT 501 (857)
Q Consensus 432 ~~t----~~~ll~a~~~~g~~~~A~~if~~m~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~ 501 (857)
..+ .+.+-..+...|..+.+..++..... +..+ -..++..+...|...|++++|..++.+....-.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~---- 166 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK---- 166 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT----
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH----
Confidence 322 22233334457899999999988754 1222 256788899999999999999999998765420
Q ss_pred ccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 502 FLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS--GCQ-L-D--QTKHAWLLVEASRAGKCHLLEHAFDS 574 (857)
Q Consensus 502 ~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~--g~~-p-d--~~t~~~Ll~~~~~~G~~~~A~~~~~~ 574 (857)
...-+| ...+|..++..|...|+++.|..+++..... .+. | . ...+..+...+...|++++|...|..
T Consensus 167 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 167 -----KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp -----TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred -----hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 000122 2357888889999999999999999887643 222 2 1 23555666667888999999998876
Q ss_pred HHHC----CCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHhhhC--CCccCHHHHHHHHHHhhhccCHHHHHHHHHH
Q 003016 575 LLEA----GEIPHPLFFT----EMLIQAIVQSNYEKAVALINAMAYA--PFHITERQWTELFESNEDRISRDKLEKLLNA 644 (857)
Q Consensus 575 m~~~----gi~p~~~~~~----~li~~~~~~g~~~~A~~l~~~M~~~--~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~ 644 (857)
..+. +......... .++.+.......+.....+..-... ...|....+..+..++. .+++......+..
T Consensus 242 a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 242 SFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQ 320 (434)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 6542 2222221111 1122222234444444444432222 23344456666666654 3555555555544
Q ss_pred H
Q 003016 645 L 645 (857)
Q Consensus 645 m 645 (857)
.
T Consensus 321 ~ 321 (434)
T 4b4t_Q 321 Y 321 (434)
T ss_dssp T
T ss_pred H
Confidence 3
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0079 Score=66.50 Aligned_cols=215 Identities=9% Similarity=-0.055 Sum_probs=143.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhh--hhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMH--RKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG-LKP 347 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~--~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 347 (857)
...+...|++++|.+.|..+.......- +.+ ..+.......-..++..+...|...|++++|.+.+..+...- -.+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQS-SAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSS-SBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccc-hhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3456778999999999999876531000 000 000000000011347788999999999999999999886531 122
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhh----cC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQ----RG-VVGTASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~----~~-~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
+..+.. .+.+.+-..+...|+.+.|..++..... .+ ...-..++..+...|...|++++|..++.+.
T Consensus 90 ~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 90 KSKTVK--------VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp HHHHHH--------HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 222211 1124445555667899999999887643 22 2223557888999999999999999999987
Q ss_pred Hhc---CCCCCc-HHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003016 423 KSL---RHSKPL-EITFTGLIISSMDGGHIDDCISIFQHMKD---HCEPN----IGTVNAMLKVYSRNDMFSKAKELFEE 491 (857)
Q Consensus 423 ~~~---~g~~pd-~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~lf~~ 491 (857)
... .+-.+. ..++..+...|...|++++|..+++.... ....+ ...+..+...+...|++++|...|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 162 LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 652 122222 34688899999999999999999998765 12222 35567777888889999999998887
Q ss_pred HHH
Q 003016 492 TTR 494 (857)
Q Consensus 492 M~~ 494 (857)
...
T Consensus 242 a~~ 244 (434)
T 4b4t_Q 242 SFE 244 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 154
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.38 E-value=0.0014 Score=58.27 Aligned_cols=110 Identities=12% Similarity=0.129 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
..+..+...+...|++++|...|.......+.+...+..+...|...|++++|...|++....... ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----------~~~ 73 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE-----------NRE 73 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------STT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-----------cch
Confidence 345666667777888888888888777655567888899999999999999999999998775400 011
Q ss_pred C----HhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003016 513 D----EYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWL 555 (857)
Q Consensus 513 d----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~L 555 (857)
+ ..+|..+..++...|++++|...|+...+. .|+......+
T Consensus 74 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 74 DYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 1 556777777888888888888888888764 3455444433
No 155
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.37 E-value=0.003 Score=65.93 Aligned_cols=192 Identities=11% Similarity=-0.005 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...+.+.|++++|...|.+..... +.+...|..+..+|.+.|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN----------------PLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44556666666667777777777777666532 23566666666667777777777777776665
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHCCCHHHHHHH
Q 003016 343 SGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGV----VGTASVYYELACCLCNNGRWQDAMLV 418 (857)
Q Consensus 343 ~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~----~~d~~t~~~lI~~~~~~g~~~~A~~l 418 (857)
. .|+.... +..+..+|...|++++|...|++..+.+. ......+..+ ...+...
T Consensus 67 ~--~p~~~~~-----------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~------- 124 (281)
T 2c2l_A 67 L--DGQSVKA-----------HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR------- 124 (281)
T ss_dssp S--CTTCHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH-------
T ss_pred h--CCCCHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH-------
Confidence 4 3333221 25666677777777777777766543221 1111122221 1111111
Q ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 003016 419 VEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRN-DMFSKAKELFEETTRA 495 (857)
Q Consensus 419 ~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~-g~~~~A~~lf~~M~~~ 495 (857)
+..... .....+......+ ..+ ..|+.++|.+.++...+.-+.+......+-..+.+. +.+++|.++|.+..+.
T Consensus 125 ~~~~~~-~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 125 WNSIEE-RRIHQESELHSYL-TRL-IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHH-TCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHH-HHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111222 2223332222222 222 257777887777766653333344445555555555 6688899999887653
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.36 E-value=0.0022 Score=57.05 Aligned_cols=97 Identities=11% Similarity=0.165 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhC---CCCC----HHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDH---CEPN----IGTVN 470 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~---~~p~----~~~~~ 470 (857)
.|..+...+...|++++|...|.+.... .+.+...+..+...+...|++++|...++..... ..++ ..+|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3555555666666666666666665542 1234455555666666666666666666665541 1222 66777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 471 AMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 471 ~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+...|.+.|++++|.+.|++.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 78888888888888888888887754
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.35 E-value=0.00081 Score=58.13 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCC--CHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEP--NIGTVNAMLKV 475 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p--~~~~~~~li~~ 475 (857)
.|..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...|+...+..+. +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3566667777778888888887777662 2234556677777777888888888888877764444 67788888888
Q ss_pred HHhc-CCHHHHHHHHHHHHHcC
Q 003016 476 YSRN-DMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~-g~~~~A~~lf~~M~~~g 496 (857)
|.+. |++++|.+.|.+.....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 8888 88888888888887654
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.34 E-value=0.003 Score=57.21 Aligned_cols=100 Identities=7% Similarity=-0.100 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhc
Q 003016 226 KSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKN 305 (857)
Q Consensus 226 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~ 305 (857)
.+...|..+...|.+.|+++.|...|...... .+.+...|..+..++...|++++|...|++.....
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------- 73 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD----------- 73 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------
Confidence 36677777777888888888888888877663 12356777777888888888888888888777642
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 306 WDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 306 f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+.+...|..+..++...|++++|...|....+.
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 335667777777788888888888888777654
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.33 E-value=0.0023 Score=58.93 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..+..+...+.+.|++++|...|++.... .+.+...+..+-.+|...|++++|...|+......+.+...|..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34666777888899999999999988762 2345667788888889999999999999998875556778888899999
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
...|++++|.+.|++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988744
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.30 E-value=0.0047 Score=55.20 Aligned_cols=97 Identities=19% Similarity=0.057 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHH
Q 003016 191 GQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSV 270 (857)
Q Consensus 191 ~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~l 270 (857)
..+...-..+...|+++.|...|+..++.. +.+..+|..+..+|.+.|++++|+..|++..+. -+.+...|..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 456666777888999999999999988753 237788999999999999999999999998873 23357889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
..++...|++++|...|++....
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHh
Confidence 99999999999999999988763
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.27 E-value=0.0044 Score=56.01 Aligned_cols=101 Identities=6% Similarity=0.019 Sum_probs=84.0
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
.+...|..+...+...|++++|+..|...... .+.+...+..+...+...|++++|...|+...+..+.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667888888899999999999999988762 2335677888888899999999999999988875556788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 003016 474 KVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+|...|++++|...|.+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999987744
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.27 E-value=0.0032 Score=61.60 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT---------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHS 428 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d---------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~ 428 (857)
+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..++..... .
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--D 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C
Confidence 36778888999999999999999876432211 267888999999999999999999998873 3
Q ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 003016 429 KPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK-ELFEETTRAN 496 (857)
Q Consensus 429 ~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~lf~~M~~~g 496 (857)
+.+...+..+-.+|...|++++|...|+...+..+.+...+..+..++.+.++..++. ..|..|...+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3456788888999999999999999999988755567888888888888888877776 5666665444
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.26 E-value=0.0031 Score=57.01 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
.++..+-..+.+.|++++|...|+...+-.+.+...|+.+-.+|.+.|++++|++.|++..+.. |
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~---------------~ 73 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG---------------R 73 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC---------------c
Confidence 3455666777788888888888888777555678889999999999999999999999887643 3
Q ss_pred CH--------hHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003016 513 DE--------YTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTK 551 (857)
Q Consensus 513 d~--------~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t 551 (857)
+. .+|..+-.++...|++++|++.|++.+. ..||+.+
T Consensus 74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~ 118 (127)
T 4gcn_A 74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPEL 118 (127)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHH
Confidence 22 2455566667777778888777777665 3455543
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.25 E-value=0.0073 Score=55.09 Aligned_cols=100 Identities=5% Similarity=-0.008 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc----HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHH
Q 003016 394 GTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL----EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTV 469 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~ 469 (857)
.+...|..+...+...|++++|+..|++... ..|+ ...+..+...|...|++++|...++......+.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 3566788888899999999999999999876 2355 56788888889999999999999999887555678889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
..+..+|...|++++|...|++.....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998754
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.24 E-value=0.0035 Score=61.32 Aligned_cols=127 Identities=8% Similarity=-0.082 Sum_probs=67.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc--------------H
Q 003016 367 LVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL--------------E 432 (857)
Q Consensus 367 Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd--------------~ 432 (857)
.+......|.++.|.+.++.-.... ......|..+...+.+.|++++|+..|.+......-.|+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3334444566666665554322111 112334667777888889999999998888762222221 1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
..+..+-.+|.+.|++++|...++...+..+.+...|..+..+|...|++++|.+.|++...
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44555555566666666666666665553344555666666666666666666666666555
No 166
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.22 E-value=0.0036 Score=59.10 Aligned_cols=99 Identities=9% Similarity=-0.013 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
...|..+...|.+.|++++|+..|++.... .+-+...+..+-.+|.+.|++++|...|+...+..+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445777777788888888888888887762 223566777777888888888888888888877545567888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 003016 476 YSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 476 ~~~~g~~~~A~~lf~~M~~~g 496 (857)
|.+.|++++|.+.|++.....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 888888888888888887744
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.21 E-value=0.002 Score=59.56 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCC-cHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVV-GT----ASVYYELACCLCNNGRWQDAMLVVEKIKSLR---HSKP-LEI 433 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-~d----~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~---g~~p-d~~ 433 (857)
++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..... +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3578888999999999999999887643211 11 2468888999999999999999999876521 1111 134
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhhC---CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 434 TFTGLIISSMDGGHIDDCISIFQHMKDH---CE---PNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 434 t~~~ll~a~~~~g~~~~A~~if~~m~~~---~~---p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
++..+-..+...|++++|...++..... .. .....+..+...|...|++++|.+.+++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5777888899999999999999987651 11 1145677888899999999999999998765
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.18 E-value=0.056 Score=57.43 Aligned_cols=172 Identities=8% Similarity=0.032 Sum_probs=123.5
Q ss_pred HhcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCC
Q 003016 325 VPSHQWK-GVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK----------INEAVAAVRNMEQRGVV 393 (857)
Q Consensus 325 ~~~g~~~-~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~----------~~~A~~lf~~m~~~~~~ 393 (857)
.+.|.+. +|+.++..+... .|+..|. |+.--......+. +++++.+++.+...+..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~yta-----------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATL-----------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHH-----------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHH-----------HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 4556654 789999999864 5776664 4432222222222 68899999999887654
Q ss_pred CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHhhCCCCCHHHHH
Q 003016 394 GTASVYYELACCLCNNGR--WQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH-IDDCISIFQHMKDHCEPNIGTVN 470 (857)
Q Consensus 394 ~d~~t~~~lI~~~~~~g~--~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~-~~~A~~if~~m~~~~~p~~~~~~ 470 (857)
+..+|+.-...+.+.|+ +++++.+++.+... -+-|...|+.---.+...|. .+++.+.++.+.+..+.|...|+
T Consensus 107 -ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~ 183 (331)
T 3dss_A 107 -SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 183 (331)
T ss_dssp -CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred -CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 56678887777888884 89999999999983 24456667666666667787 58999999999886678899998
Q ss_pred HHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhc
Q 003016 471 AMLKVYSRN--------------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATA 527 (857)
Q Consensus 471 ~li~~~~~~--------------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~ 527 (857)
.....+.+. +.++++++.+.+..... | |...|+.+-..+...
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~---------------P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---------------PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHhc
Confidence 877777665 45889999999988854 6 666776554444443
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.15 E-value=0.0084 Score=56.47 Aligned_cols=98 Identities=13% Similarity=0.058 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 465 NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 465 ~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
+...|..+...|.+.|++++|++.|++..... | +...|..+..+|...|++++|+..|++.++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---------------PANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34556666666677777777777777766643 4 4455666666666667777777777666653
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 003016 544 GCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA 578 (857)
Q Consensus 544 g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~ 578 (857)
. +-+...|..+-..|...|++++|...|+...+.
T Consensus 75 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 D-PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 2 223456666666666667777777766666553
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.14 E-value=0.0056 Score=56.27 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 433 ITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 433 ~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
..+..+-..+.+.|++++|...|+......+.+...|..+..+|.+.|++++|+..|++..... |
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------p 83 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---------------I 83 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------T
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------C
Confidence 3455666777888999999999988877555678888888888899999999999999888754 5
Q ss_pred -CHhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 513 -DEYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 513 -d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
+...|..+..++...|++++|...|+...+
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666777788888888888888888775
No 171
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.13 E-value=0.0036 Score=57.78 Aligned_cols=133 Identities=11% Similarity=-0.096 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC----HhHhhhhHHHHHhcCCHHHHHHHHHHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD----EYTYSSMLEASATAHQWEYFEYVYKGMAL 542 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd----~~t~~~ll~a~~~~g~~~~a~~l~~~m~~ 542 (857)
.++..+...|...|++++|...|.+...... -.++ ..++..+...+...|++++|...+++..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK------------EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH------------HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667777888888999999998888765320 0011 13677777788888999999998888765
Q ss_pred c----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 003016 543 S----GCQLD-QTKHAWLLVEASRAGKCHLLEHAFDSLLEA----GEIP-HPLFFTEMLIQAIVQSNYEKAVALINAMA 611 (857)
Q Consensus 543 ~----g~~pd-~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~----gi~p-~~~~~~~li~~~~~~g~~~~A~~l~~~M~ 611 (857)
. +-.+. ...+..+...+...|++++|...++...+. +..+ ....+..+...+...|++++|...+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 78 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3 11111 335666677788889999998888876543 2111 13456666677777888888888887753
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.012 Score=53.50 Aligned_cols=96 Identities=19% Similarity=0.086 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHH
Q 003016 190 EGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKS----RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIA 265 (857)
Q Consensus 190 ~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~ 265 (857)
...+..+...+...|+++.|...|+..++.. |+ ..+|..+...|...|++++|...|+..... .+.+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 100 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD-----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVK 100 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHH
Confidence 3444455555555555555555555554421 22 455555555666666666666666655542 122455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 266 AYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 266 t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
.|..+..+|...|++++|...|++...
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666666666666554
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.06 E-value=0.013 Score=52.77 Aligned_cols=96 Identities=8% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh---CCCCC----HHHHHH
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD---HCEPN----IGTVNA 471 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~~~p~----~~~~~~ 471 (857)
+..+...+.+.|++++|+..|.+.... .+-+...|+.+-.+|.+.|++++|...|+...+ ...++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 333444444444444444444444431 112233444444444455555555554444433 11111 234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 472 MLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 472 li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+-..|...|++++|++.|++.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6667777777777777777766533
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.03 E-value=0.21 Score=53.03 Aligned_cols=161 Identities=7% Similarity=-0.001 Sum_probs=118.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHH-HHH---HHHHHHhcC-------CHHHHHHHHHHHHhCcCCCCCCC
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQSGLMFTEGQ-MLK---LLKGLGDKG-------SWRQAMSVLDWVYGLKDKRDLKS 227 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~g~~p~~~t-~~~---ll~a~~~~g-------~~~~A~~l~~~~~~~~~~~~~~~ 227 (857)
..++.........++|+.++..+.... |+..| |+. ++..+.... .++.++.+++.++... +.+
T Consensus 34 ~~~~~~~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~----PKn 107 (331)
T 3dss_A 34 QAVFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN----PKS 107 (331)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC----CCC
Confidence 344444445555679999999999765 55554 443 343333321 2678999999988753 348
Q ss_pred HHHHHHHHHHHHHcCC--hhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHcCCChhhhhhhhh
Q 003016 228 RFVYTKLLAILGKAGR--PHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGL-LKELVKLIERMRQKPSKRIKNMHRK 304 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~--~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~~l~~m~~k 304 (857)
..+|+.---.+.+.|+ +++++.+++.+.+. -+.|..+|+.-.-.+...|. ++++++.+..+...
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~----------- 174 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----------- 174 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----------
Confidence 8999998888888884 79999999999984 35688999998888888888 59999999999876
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHc
Q 003016 305 NWDPVLEPDLVVYNAVLNACVPS--------------HQWKGVFWVFKQLRKS 343 (857)
Q Consensus 305 ~f~~~~~pd~~t~~~li~~~~~~--------------g~~~~A~~l~~~m~~~ 343 (857)
-+-|...|+......... +.++++++.+......
T Consensus 175 -----~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 175 -----NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp -----CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 356888888776665554 3467888888888765
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.98 E-value=0.014 Score=51.92 Aligned_cols=95 Identities=12% Similarity=0.050 Sum_probs=56.3
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC---HHHHHHHHHHHH
Q 003016 402 LACCLCNNGRWQDAMLVVEKIKSLRHSKP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN---IGTVNAMLKVYS 477 (857)
Q Consensus 402 lI~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~---~~~~~~li~~~~ 477 (857)
+...+.+.|++++|...|+.......-.+ ....+..+..++...|++++|...|+......+.+ ...+..+..+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455566666666666666554211111 01345555566666677777777666665532233 555666777777
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 003016 478 RNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 478 ~~g~~~~A~~lf~~M~~~g 496 (857)
+.|++++|...|++.....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 7777777777777777644
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.94 E-value=0.0075 Score=68.16 Aligned_cols=137 Identities=8% Similarity=0.003 Sum_probs=101.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc----CC-CCCC-HHHHH
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLK----SRFVYTKLLAILGKAGRPHEALRIFNLMLED----CN-LYPD-IAAYH 268 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~g-i~pd-~~t~~ 268 (857)
.+...|++++|..+++..++.......+ ...++|.|...|...|++++|..++++..+- .| -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999999887654433222 2478999999999999999999999886641 12 2343 56799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 269 SVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 269 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.|...|...|++++|..++++.... +.+++.+..+-...+.+.+-.++...+.+++|..+|..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i--------~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAI--------LLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--------HHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987642 233333322223445566667777889999999999999763
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.94 E-value=0.0056 Score=54.73 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=72.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSR 478 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~ 478 (857)
+..+...+.+.|++++|+..|++.... -+.+...+..+-.++...|+.++|...|+...+.-+.+...|..+...|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 455566777888888888888887762 223556677777778888888888888888777445567788888888888
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 003016 479 NDMFSKAKELFEETTRAN 496 (857)
Q Consensus 479 ~g~~~~A~~lf~~M~~~g 496 (857)
.|++++|+..|++..+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 899999999988887643
No 178
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.89 E-value=0.0075 Score=53.90 Aligned_cols=95 Identities=11% Similarity=-0.061 Sum_probs=71.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHH
Q 003016 193 MLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAV 272 (857)
Q Consensus 193 ~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~ 272 (857)
+..+...+.+.|++++|...++.+++.. +.+...|..+-.+|.+.|++++|+..|++..+. -+.+...|..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE----PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3344556777888888888888887643 236778888888888888888888888887763 1235677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHcC
Q 003016 273 TLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+|.+.|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888887764
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.77 E-value=0.015 Score=54.47 Aligned_cols=98 Identities=9% Similarity=0.021 Sum_probs=71.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCC
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSL--------RH--------SKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHC 462 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~--------~g--------~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~ 462 (857)
|......+.+.|++++|+..|.+.... .. .+.+...|..+-.+|.+.|++++|...++......
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555566666666666666655441 00 01223567778888888999999999998888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
+.+...|..+..+|...|++++|...|++.....
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 5678889999999999999999999999988854
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.75 E-value=0.038 Score=49.01 Aligned_cols=104 Identities=13% Similarity=0.047 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-EITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a 441 (857)
..+...+.+.|++++|...|+...+...... ...+..+..+|.+.|++++|...|+.......-.+. ...+..+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3566778899999999999999887653322 146778889999999999999999998873211111 5667788889
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHH
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGT 468 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~ 468 (857)
+...|++++|...|+.+.+..+.+...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999999998743334433
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.75 E-value=0.014 Score=65.64 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL-------------EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd-------------~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
|..+...|.+.|++++|+..|.+........++ ...|..+-.+|.+.|++++|...|+...+..+.+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 555555666666666666666655541111110 2334444444444444444444444444432334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
...|..+..+|...|++++|+..|++..+
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44455555555555555555555555444
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.72 E-value=0.0085 Score=67.73 Aligned_cols=136 Identities=11% Similarity=0.044 Sum_probs=93.9
Q ss_pred HHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH
Q 003016 273 TLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKPSA 349 (857)
Q Consensus 273 ~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~ 349 (857)
.+...|++++|..++++.... +.+++.+...--..+++.|..+|...|++++|..++++.+.. -+.|+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~--------~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEK--------QEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--------HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHhCCCHHHHHHHHHHHHHH--------HHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 455789999999999887643 344444433334668999999999999999999999988642 123332
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc-----CC-CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR-----GV-VG-TASVYYELACCLCNNGRWQDAMLVVEKI 422 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~-----~~-~~-d~~t~~~lI~~~~~~g~~~~A~~l~~~m 422 (857)
... ..+++.|...|...|++++|+.++++..+- |. -| ...+.+.+-.++...+++++|..+|..+
T Consensus 390 p~~--------a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 390 AQL--------GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 123589999999999999999998875431 21 12 2334455556666777777777777777
Q ss_pred Hh
Q 003016 423 KS 424 (857)
Q Consensus 423 ~~ 424 (857)
++
T Consensus 462 ~~ 463 (490)
T 3n71_A 462 RE 463 (490)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.71 E-value=0.0032 Score=55.72 Aligned_cols=87 Identities=13% Similarity=0.014 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CC-cHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003016 409 NGRWQDAMLVVEKIKSLRHS-KP-LEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK 486 (857)
Q Consensus 409 ~g~~~~A~~l~~~m~~~~g~-~p-d~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~ 486 (857)
.|++++|+..|++... .+. .| +...+..+-..|...|++++|...|+...+..+.+...+..+..+|.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4677777777777766 220 13 34557777777888888888888888887755556788888888888888888888
Q ss_pred HHHHHHHHcC
Q 003016 487 ELFEETTRAN 496 (857)
Q Consensus 487 ~lf~~M~~~g 496 (857)
..|++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888877644
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.70 E-value=0.015 Score=65.32 Aligned_cols=128 Identities=11% Similarity=0.102 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 364 LKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--------------ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 364 ~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--------------~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++.... .+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--DS 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--ST
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CC
Confidence 47888899999999999999999876543322 577999999999999999999999999873 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAK-ELFEETT 493 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~-~lf~~M~ 493 (857)
.+...+..+-.+|...|++++|...|+...+..+.+...+..+..++.+.++.++|. .++..|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999998855556778889999999999888776 4555554
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.58 E-value=0.0047 Score=69.94 Aligned_cols=118 Identities=11% Similarity=-0.027 Sum_probs=88.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC
Q 003016 199 GLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG 278 (857)
Q Consensus 199 a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g 278 (857)
.+...|++++|.+.++.+++.. +.+..+|+.+...|.+.|++++|...|++..+. -+.+..+|..+..+|.+.|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN----PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 4556789999999999888753 236889999999999999999999999998873 2346788999999999999
Q ss_pred CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 003016 279 LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNA--CVPSHQWKGVFWVFK 338 (857)
Q Consensus 279 ~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~--~~~~g~~~~A~~l~~ 338 (857)
++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS----------------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999987643 2233345545444 778899999998887
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.45 E-value=0.0046 Score=54.66 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh
Q 003016 168 REMTAKNWKFVRIMNQSGL--MFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH 245 (857)
Q Consensus 168 ~~~~~~A~~l~~~M~~~g~--~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~ 245 (857)
.|.+++|+..|++..+.+. +-+...+..+...|...|++++|...++.+++..+ .+..++..+..+|.+.|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP----NHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CchHHHHHHHHHHHHcCCHH
Confidence 3556667777777666431 12334566666777777777777777777766432 25667777777777777777
Q ss_pred HHHHHHHHhHH
Q 003016 246 EALRIFNLMLE 256 (857)
Q Consensus 246 ~A~~vf~~m~~ 256 (857)
+|...|++...
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.40 E-value=0.026 Score=61.44 Aligned_cols=121 Identities=10% Similarity=0.082 Sum_probs=98.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQR---------------GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSK 429 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~---------------~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~ 429 (857)
..+...|.+.|++++|...|++..+. .-..+..+|+.+..+|.+.|++++|+..+++.... .+
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 67788899999999999999987651 11123567888999999999999999999999872 23
Q ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKE 487 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 487 (857)
.+...+..+-.+|...|++++|...|+...+..+.+...+..+...+.+.++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999987555577888888888888877777654
No 188
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.40 E-value=0.029 Score=63.38 Aligned_cols=118 Identities=12% Similarity=-0.072 Sum_probs=91.1
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh
Q 003016 165 LSEREMTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP 244 (857)
Q Consensus 165 l~~~~~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~ 244 (857)
+.+.|.+++|...|++..+.. +-+..++..+..+|.+.|++++|...++.+++.. +.+..+|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC----TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH
Confidence 346788899999999888764 3457789999999999999999999999998853 33788999999999999999
Q ss_pred hHHHHHHHHhHHcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 003016 245 HEALRIFNLMLEDCNLYPDIAAYHSVAVT--LGQVGLLKELVKLIER 289 (857)
Q Consensus 245 ~~A~~vf~~m~~~~gi~pd~~t~~~li~~--~~~~g~~~~A~~l~~~ 289 (857)
++|...|++..+... .+...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999887421 234455555555 8888999999999884
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.39 E-value=0.032 Score=52.18 Aligned_cols=100 Identities=14% Similarity=0.017 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCc--------CCC------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLK--------DKR------DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~--------~~~------~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 257 (857)
.+...-..+.+.|+++.|...|...+... +.. .+.+..+|..+..+|.+.|+++.|+..|+...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34444555666677777777776665430 000 1113467888888888999999999999888773
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 258 CNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 258 ~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
-+.+...|..+..+|...|++++|...|.+....
T Consensus 93 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 --EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 2345778888888999999999999999888763
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.34 E-value=0.029 Score=61.10 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCcCC------------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCC
Q 003016 192 QMLKLLKGLGDKGSWRQAMSVLDWVYGLKDK------------RDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCN 259 (857)
Q Consensus 192 t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~------------~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~g 259 (857)
.+..+-..+.+.|+++.|...|+.+++.... ....+..+|+.+...|.+.|++++|+..+++..+.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 3555666777888888888888877651100 01124678888999999999999999999998873
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003016 260 LYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFW 335 (857)
Q Consensus 260 i~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~ 335 (857)
-+.+...|..+..+|...|++++|+..|++..+.. +.+...+..+-..+...++.+++.+
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----------------P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----------------PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23367889999999999999999999999988742 3366677777777776666665543
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.10 E-value=0.016 Score=62.33 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Q 003016 363 LLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISS 442 (857)
Q Consensus 363 ~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~ 442 (857)
.+..+...|.+.|++++|...|++..... |+... +...|+.+++...+ . ...|..+-.+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 34555666666677777777777665432 22111 11222333322211 1 12567777778
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 443 MDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 443 ~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+.|++++|...++...+..+.+...|..+..+|...|++++|...|++...
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887774455778888888888888888888888888765
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.09 E-value=0.065 Score=50.20 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-------------HhHhhhhHHHHHhcCCHHHH
Q 003016 467 GTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD-------------EYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 467 ~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd-------------~~t~~~ll~a~~~~g~~~~a 533 (857)
..+......+.+.|++++|++.|++..+.. |+ ...|..+-.++...|++++|
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---------------p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eA 76 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS---------------HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEA 76 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHH
Confidence 345666677889999999999999988854 44 12566666666666777777
Q ss_pred HHHHHHHHHc-----CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHH
Q 003016 534 EYVYKGMALS-----GCQLDQ-TKH----AWLLVEASRAGKCHLLEHAFDSL 575 (857)
Q Consensus 534 ~~l~~~m~~~-----g~~pd~-~t~----~~Ll~~~~~~G~~~~A~~~~~~m 575 (857)
+..+++.++. .+.|+. ..| ...-.++...|++++|...|+..
T Consensus 77 l~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 77 LHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666542 113432 233 44444444555555555555444
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.03 E-value=0.015 Score=62.51 Aligned_cols=97 Identities=11% Similarity=0.185 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH-H
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKV-Y 476 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~-~ 476 (857)
.|+.+..+|.+.|++++|+..|++.... .+.+...+..+-.+|...|++++|...|+...+..+.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 5888999999999999999999998873 234677889999999999999999999999876333455566666555 3
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 003016 477 SRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 477 ~~~g~~~~A~~lf~~M~~~g 496 (857)
...+..+++..+|..|....
T Consensus 310 ~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHhhCCC
Confidence 34567788889999887643
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.92 E-value=0.1 Score=48.91 Aligned_cols=100 Identities=13% Similarity=0.018 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC-C-----C-----HHHHHHHHHHHHhcCChHH
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE-P-----D-----LVVYNAVLNACVPSHQWKG 332 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~-p-----d-----~~t~~~li~~~~~~g~~~~ 332 (857)
...+......+.+.|++++|+..|++..+.. .. | + ...|+.+-.++.+.|++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~---------------p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~e 75 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS---------------HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDE 75 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---------------CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHH
Confidence 3456667778889999999999999987743 11 0 2 3389999999999999999
Q ss_pred HHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHhHH----HHHHHHHHHcCCHHHHHHHHHHHhh
Q 003016 333 VFWVFKQLRKS-----GLKPSAATYGLAMESYRRCLL----KVLVRAFWEEGKINEAVAAVRNMEQ 389 (857)
Q Consensus 333 A~~l~~~m~~~-----g~~pd~~t~~~ll~~~~~~~~----~~Li~~y~k~g~~~~A~~lf~~m~~ 389 (857)
|+..+++.++. .+.|+.... | ...-.++...|++++|+..|++..+
T Consensus 76 Al~~~~kAL~l~n~~~e~~pd~~~A-----------~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 76 ALHSADKALHYFNRRGELNQDEGKL-----------WISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHHHHCCTTSTHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccCCCchHHH-----------HHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999874 236776543 5 6777888888999999888887643
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.65 E-value=0.37 Score=55.44 Aligned_cols=161 Identities=7% Similarity=-0.027 Sum_probs=123.9
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCcCCCCCCCHHHHH
Q 003016 164 RLSEREMTAKNWKFVRIMNQSGLMFTE-GQMLKLLKGLGDKGS----------WRQAMSVLDWVYGLKDKRDLKSRFVYT 232 (857)
Q Consensus 164 ~l~~~~~~~~A~~l~~~M~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~A~~l~~~~~~~~~~~~~~~~~~~n 232 (857)
........++|++++..+.... |+. ..|+.--.++...|+ +++++..++.+++..+ .+..+|+
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p----K~y~aW~ 111 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP----KSYGTWH 111 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT----TCHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC----CCHHHHH
Confidence 3344556689999999999865 444 456554445555555 8999999999987543 4888999
Q ss_pred HHHHHHHHcC--ChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHcCCChhhhhhhhhcCCCC
Q 003016 233 KLLAILGKAG--RPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVG-LLKELVKLIERMRQKPSKRIKNMHRKNWDPV 309 (857)
Q Consensus 233 ~Li~~y~k~g--~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~ 309 (857)
.---.+.+.| ++++|+..++++.+. -+.|..+|+.-.-.+.+.| .++++++.+.++.+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~---------------- 173 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---------------- 173 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----------------
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------------
Confidence 9999999999 669999999999984 3468899999988888999 899999999999875
Q ss_pred CCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHH
Q 003016 310 LEPDLVVYNAVLNACVPS--------------HQWKGVFWVFKQLRKSGLKPSAA 350 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~pd~~ 350 (857)
-.-|..+|+.....+.+. +.++++.+.+...... .|+..
T Consensus 174 ~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~ 226 (567)
T 1dce_A 174 NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQ 226 (567)
T ss_dssp TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCS
T ss_pred CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCc
Confidence 355888898877776653 4568888888888765 35443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.042 Score=47.14 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
+...|..+...|.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++....
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456667777777778888888877777663 2235677777777777888888888888777764
No 197
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.58 E-value=0.25 Score=59.38 Aligned_cols=98 Identities=15% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHcCCHHHHHH-HHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHH
Q 003016 372 WEEGKINEAVA-AVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDD 450 (857)
Q Consensus 372 ~k~g~~~~A~~-lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~ 450 (857)
...+++++|.+ ++..+. +......++..+.+.|.+++|+.+.+.-.. -.......|++++
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTL 670 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHH
Confidence 35788888877 553222 011246777888889999998876532111 1233456788888
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 451 CISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 451 A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.
T Consensus 671 A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 671 ARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 88886554 467788889999999999999988888764
No 198
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.58 E-value=0.51 Score=54.30 Aligned_cols=171 Identities=8% Similarity=0.029 Sum_probs=133.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCCCCHH
Q 003016 328 HQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGK----------INEAVAAVRNMEQRGVVGTAS 397 (857)
Q Consensus 328 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~----------~~~A~~lf~~m~~~~~~~d~~ 397 (857)
..-++|++.++.+... .|+..+. |+.--..+.+.|+ ++++...++.+.+.+.. +..
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~ta-----------W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~ 108 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATL-----------WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYG 108 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHH-----------HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHH-----------HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHH
Confidence 3446789999999875 5666664 6665556666666 99999999999987755 566
Q ss_pred HHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 398 VYYELACCLCNNG--RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG-HIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 398 t~~~lI~~~~~~g--~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g-~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
+|+.-.-.+.+.| ++++++..++++.+. -.-|..+|+.---.+.+.| ..+++.+.++.+.+..+.|...|+....
T Consensus 109 aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 109 TWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 7888888888899 779999999999983 2346677777766777788 8999999999998866778999998888
Q ss_pred HHHhc--------------CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCC
Q 003016 475 VYSRN--------------DMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQ 529 (857)
Q Consensus 475 ~~~~~--------------g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~ 529 (857)
.+.+. +.+++|++.+.+..... | |...|...-..+...+.
T Consensus 187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~---------------P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD---------------PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC---------------SSCSHHHHHHHHHHSCCCC
T ss_pred HHHhhcccccccccccccHHHHHHHHHHHHHHHhhC---------------CCCccHHHHHHHHHhcCCC
Confidence 77763 56799999999988754 6 66778777666666665
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.044 Score=47.00 Aligned_cols=64 Identities=8% Similarity=-0.002 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 432 EITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRA 495 (857)
Q Consensus 432 ~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~ 495 (857)
...+..+-..+...|++++|...|+...+..+.+...|..+..+|.+.|++++|++.|++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555556666666666666666665544445666777777777777777777777777653
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.40 E-value=0.1 Score=42.62 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQK 293 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 293 (857)
...+..+...|.+.|++++|...|++.... .+.+...|..+...+.+.|++++|...|++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345556666666667777777766666552 1234556666666667777777777777666553
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.39 E-value=0.1 Score=47.59 Aligned_cols=112 Identities=7% Similarity=-0.108 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003016 480 DMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEA 559 (857)
Q Consensus 480 g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~ 559 (857)
+++++|++.|++..+.| .|+.. +-..|...+.++.|.+.|++..+.| +...+..|-..|
T Consensus 9 ~d~~~A~~~~~~aa~~g--------------~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--------------EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--------------CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--------------CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 46788888888887766 12222 4445555677888888888888765 556666777777
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhhCCC
Q 003016 560 SR----AGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIV----QSNYEKAVALINAMAYAPF 615 (857)
Q Consensus 560 ~~----~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~----~g~~~~A~~l~~~M~~~~~ 615 (857)
.. .++.++|.++|+...+.| ++..+..|-..|.. .+++++|+.+|++....|.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 76 788888888888887765 45666667777777 6788888888888766654
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.25 E-value=0.15 Score=41.72 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Q 003016 397 SVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVY 476 (857)
Q Consensus 397 ~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~ 476 (857)
..|..+...+...|++++|+..|++.... .+.+..++..+-..+...|++++|...|+......+.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34555556666666666666666666542 1223445556666666666666666666666553334455555555444
Q ss_pred Hh
Q 003016 477 SR 478 (857)
Q Consensus 477 ~~ 478 (857)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.25 E-value=0.09 Score=45.73 Aligned_cols=63 Identities=14% Similarity=-0.051 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 227 SRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMR 291 (857)
Q Consensus 227 ~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~ 291 (857)
+...+..+...|.+.|++++|...|++.... -+.+...|..+..+|...|++++|...|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444455555555555555555555544432 11224444444444555555555555544443
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.13 E-value=0.11 Score=45.07 Aligned_cols=79 Identities=14% Similarity=0.033 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 003016 173 KNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFN 252 (857)
Q Consensus 173 ~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~ 252 (857)
+|+..|+...+.. +-+...+..+...+...|+++.|...++.+++.. +.+..+|..+...|.+.|++++|...|+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4566777776654 3467788889999999999999999999998753 2367889999999999999999999999
Q ss_pred HhHH
Q 003016 253 LMLE 256 (857)
Q Consensus 253 ~m~~ 256 (857)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.04 E-value=0.58 Score=42.39 Aligned_cols=110 Identities=12% Similarity=-0.071 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH----cCChh
Q 003016 170 MTAKNWKFVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK----AGRPH 245 (857)
Q Consensus 170 ~~~~A~~l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k----~g~~~ 245 (857)
++++|+.+|+.-.+.| .|... +-..|...+.++.|...|....+. .+...++.|-.+|.. .++++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL------NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHcCCCCCccHH
Confidence 4678888999888888 34444 555566667888899999988765 277889999999998 89999
Q ss_pred HHHHHHHHhHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHcCC
Q 003016 246 EALRIFNLMLEDCNLYPDIAAYHSVAVTLGQ----VGLLKELVKLIERMRQKP 294 (857)
Q Consensus 246 ~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g 294 (857)
+|...|++..+. -+..++..|-..|.. .+++++|..+|++..+.|
T Consensus 79 ~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999884 578889999999988 899999999999998876
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.74 E-value=1.7 Score=51.88 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=103.4
Q ss_pred HHHHHHhcCCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 003016 160 VLVDRLSEREMTAKNWK-FVRIMNQSGLMFTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAIL 238 (857)
Q Consensus 160 ~l~~~l~~~~~~~~A~~-l~~~M~~~g~~p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y 238 (857)
..+......+.+++|.+ ++.. .|+...+..++..+.+.|.++.|.++.+ +. ..-....
T Consensus 604 ~~~~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~------------~~---~~~f~~~ 662 (814)
T 3mkq_A 604 LEFQTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISP------------DQ---DQKFELA 662 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCC------------CH---HHHHHHH
T ss_pred HHHhHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCC------------Cc---chheehh
Confidence 34555566788888866 4421 1213344788888888999999987752 11 1113345
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYN 318 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~ 318 (857)
..+|+++.|+++...+ .+...|..+...+.+.|+++.|.+.|.++.. |.
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------------------~~ 711 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------------------LE 711 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------------------HH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------------------hh
Confidence 6789999999886544 4678999999999999999999999998843 33
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+...|...|+.+...++-+.....|- ++.-..+|.+.|++++|.+++.++
T Consensus 712 ~l~~l~~~~~~~~~~~~~~~~a~~~~~------------------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 712 SLFLLHSSFNNKEGLVTLAKDAETTGK------------------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred hhHHHHHHcCCHHHHHHHHHHHHHcCc------------------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455555556776665555555544431 133444566666666666665544
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.48 E-value=0.19 Score=55.67 Aligned_cols=102 Identities=9% Similarity=0.056 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCC
Q 003016 271 AVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS---GLKP 347 (857)
Q Consensus 271 i~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p 347 (857)
+..+.+.|++++|..++++..... .+++.+....-..+++.+..+|...|++++|..++++.+.. -+.|
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~--------~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~ 365 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSN--------SERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG 365 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCS--------SCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhc--------cCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence 445667899999999999987642 33333333334568999999999999999999999988642 1223
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 348 SAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 348 d~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
+.... ..+++.|...|...|++++|+.++++..
T Consensus 366 ~Hp~~--------a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 366 SHPVR--------GVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp SCHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CChHH--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 32222 1235899999999999999999988754
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.45 E-value=0.3 Score=54.00 Aligned_cols=98 Identities=15% Similarity=0.060 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHhHHc-----CCCCCC-H
Q 003016 195 KLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLK----SRFVYTKLLAILGKAGRPHEALRIFNLMLED-----CNLYPD-I 264 (857)
Q Consensus 195 ~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~----~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~gi~pd-~ 264 (857)
..+..+...|++++|..+++..+........+ ...+++.|...|...|++++|+.++.+...- +.-.|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 44566778899999999999998654433333 2468999999999999999999999987641 122343 5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~ 292 (857)
.+++.|...|...|++++|..++++...
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6799999999999999999999998764
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.38 E-value=0.13 Score=57.04 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=70.5
Q ss_pred hcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH
Q 003016 276 QVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS-----G-LKPSA 349 (857)
Q Consensus 276 ~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~ 349 (857)
..|++++|..++++.... +.+++.+...--..+++.+..+|...|++++|..++++.+.. | -.|+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i--------~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 310 HYKSPSELLEICELSQEK--------MSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp TTSCHHHHHHHHHHHHHH--------HTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred hccCHHHHHHHHHHHHHH--------hhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 458899999999887642 233443333334578999999999999999999999998642 2 23333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 003016 350 ATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNME 388 (857)
Q Consensus 350 ~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~ 388 (857)
.+ +++.|...|...|++++|+.++++..
T Consensus 382 a~-----------~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 382 AS-----------MWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HH-----------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-----------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33 35899999999999999999998764
No 210
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.30 E-value=1.6 Score=41.29 Aligned_cols=129 Identities=9% Similarity=0.056 Sum_probs=95.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003016 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHA 553 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~ 553 (857)
....+.|+++.|.++-+++ -+...|..|-......|+++-|++.|..... +.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-------------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~ 64 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-------------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FD 64 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HH
T ss_pred HHHHhcCCHHHHHHHHHHh-------------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HH
Confidence 4456899999999998765 3577999999999999999999999997643 45
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc
Q 003016 554 WLLVEASRAGKCHLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI 633 (857)
Q Consensus 554 ~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g 633 (857)
.+.-.|.-.|+.+...++-+.....|- ++.....+.-.|+++++++++.+. |..|-...+ ...+|
T Consensus 65 ~L~~Ly~~tg~~e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~~------A~t~g 129 (177)
T 3mkq_B 65 KLSFLYLVTGDVNKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYAV------AKANG 129 (177)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHHH------HHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHHH------HHHcC
Confidence 566667788998877777666555552 566666777889999999999877 554433332 23466
Q ss_pred CHHHHHHHHHHH
Q 003016 634 SRDKLEKLLNAL 645 (857)
Q Consensus 634 ~~e~~~~l~~~m 645 (857)
.-+.+.++.+.+
T Consensus 130 ~~~~a~~~~~~~ 141 (177)
T 3mkq_B 130 DEAAASAFLEQA 141 (177)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHHHh
Confidence 667777776544
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.28 E-value=0.13 Score=43.72 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 003016 189 TEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 189 ~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 256 (857)
+...+..+...+...|+++.|...|+.+++..+ .+..+|..+..+|.+.|++++|...|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445666667777777777777777777766432 2455777777777777777777777776654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.26 E-value=0.17 Score=55.96 Aligned_cols=91 Identities=4% Similarity=-0.129 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHHHHHhCcCCCCCC---C-HHHHHHHHHHHHHcCChhHHHHHHHHhHHc-----CCCCCC-HHHHHHHH
Q 003016 202 DKGSWRQAMSVLDWVYGLKDKRDLK---S-RFVYTKLLAILGKAGRPHEALRIFNLMLED-----CNLYPD-IAAYHSVA 271 (857)
Q Consensus 202 ~~g~~~~A~~l~~~~~~~~~~~~~~---~-~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-----~gi~pd-~~t~~~li 271 (857)
..|++++|..+++..++.......+ + ..++|.|..+|...|++++|..++++..+- +.-.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999999887654332222 2 478999999999999999999999987651 122344 46799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHc
Q 003016 272 VTLGQVGLLKELVKLIERMRQ 292 (857)
Q Consensus 272 ~~~~~~g~~~~A~~l~~~m~~ 292 (857)
..|...|++++|..+|++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.01 E-value=0.2 Score=42.43 Aligned_cols=64 Identities=9% Similarity=-0.053 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 263 DIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 263 d~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+...|..+...|.+.|++++|...|++..+.. +.+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD----------------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666666666666666666666665532 22445666666666667777777666666554
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.93 E-value=0.14 Score=47.89 Aligned_cols=113 Identities=13% Similarity=0.036 Sum_probs=81.7
Q ss_pred HhcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHhHHcCCCCC-CHHHHHH
Q 003016 201 GDKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRP----------HEALRIFNLMLEDCNLYP-DIAAYHS 269 (857)
Q Consensus 201 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~----------~~A~~vf~~m~~~~gi~p-d~~t~~~ 269 (857)
.+.+.+++|++.++..++..+ .+...|+.+-.++...+++ ++|+..|++..+- .| +..+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P----~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNP----LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 344567888888888877533 3778888888888887765 5999999998873 35 5778999
Q ss_pred HHHHHHhcC-----------CHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003016 270 VAVTLGQVG-----------LLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFK 338 (857)
Q Consensus 270 li~~~~~~g-----------~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~ 338 (857)
+-.+|...| ++++|.+.|++... +.|+...|...+..+ +.|-+++-
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~-----------------l~P~~~~y~~al~~~------~ka~el~~ 142 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-----------------EQPDNTHYLKSLEMT------AKAPQLHA 142 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----------------HCTTCHHHHHHHHHH------HTHHHHHH
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH-----------------hCCCCHHHHHHHHHH------HhCHhccC
Confidence 999998774 89999999999987 567766666555543 33444444
Q ss_pred HHHHc
Q 003016 339 QLRKS 343 (857)
Q Consensus 339 ~m~~~ 343 (857)
.....
T Consensus 143 ~~~~~ 147 (158)
T 1zu2_A 143 EAYKQ 147 (158)
T ss_dssp HHHHS
T ss_pred ccccc
Confidence 44443
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.61 E-value=0.11 Score=48.49 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=70.8
Q ss_pred cCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCccccCCCCCCCCC-
Q 003016 444 DGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDM----------FSKAKELFEETTRANSSGYTFLSGDGAPLKP- 512 (857)
Q Consensus 444 ~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p- 512 (857)
+.+.+++|...++...+--+.+...|+.+-.++...++ +++|+..|++..+.. |
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---------------P~ 78 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---------------PK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---------------TT
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---------------cC
Confidence 34556777777777776555677788777777777765 469999999999854 7
Q ss_pred CHhHhhhhHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAH-----------QWEYFEYVYKGMALSGCQLDQTKHAWLLV 557 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g-----------~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 557 (857)
+...|..+-.+|...| ++++|.+.|++.++ +.|+...|...+.
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~ 132 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE 132 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 4568888999998775 78888888888776 5676665544443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.13 E-value=1.6 Score=46.61 Aligned_cols=144 Identities=13% Similarity=-0.007 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH----cCCh----hHHHHHHH
Q 003016 186 LMFTEGQMLKLLKGLGD--KG---SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGK----AGRP----HEALRIFN 252 (857)
Q Consensus 186 ~~p~~~t~~~ll~a~~~--~g---~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k----~g~~----~~A~~vf~ 252 (857)
.+.+...|...+++... .+ +..+|+.+|+++++..+ .....|..+.-+|.- .+.. ......+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP----~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSP----EFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 35566677777766443 23 45889999999987532 245555544444431 1111 11111222
Q ss_pred HhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHH
Q 003016 253 LMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKG 332 (857)
Q Consensus 253 ~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~ 332 (857)
........+.+...|.++...+...|++++|...++++.. ..|+...|..+-..+.-.|++++
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~-----------------Ln~s~~a~~llG~~~~~~G~~~e 328 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-----------------LEMSWLNYVLLGKVYEMKGMNRE 328 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----------------HCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----------------cCCCHHHHHHHHHHHHHCCCHHH
Confidence 2111112256788898888888888999999999999987 45788888778888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 003016 333 VFWVFKQLRKSGLKPSAATY 352 (857)
Q Consensus 333 A~~l~~~m~~~g~~pd~~t~ 352 (857)
|.+.|.+.... .|...||
T Consensus 329 A~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 329 AADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp HHHHHHHHHHH--SCSHHHH
T ss_pred HHHHHHHHHhc--CCCcChH
Confidence 99999999876 5666676
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.95 E-value=6.3 Score=35.30 Aligned_cols=131 Identities=8% Similarity=0.059 Sum_probs=92.5
Q ss_pred hhhhHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC-------------
Q 003016 517 YSSMLEA--SATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GE------------- 580 (857)
Q Consensus 517 ~~~ll~a--~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi------------- 580 (857)
...|+.| ....|..+++.++..+.... .+..-||.+|.-....-+-+-..++++.+-.. .+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~ 84 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHH
Confidence 3344444 33458999999999888764 35556666665555555545555555544321 11
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCC
Q 003016 581 ---IPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 581 ---~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~ 651 (857)
..+......-++.+..+|+-+.-.++++.+.. ...|++..+-.+-.|+.+.|+...+.+++.+..+.|+.
T Consensus 85 ~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 11345566678888889999998888888533 56788899999999999999999999999999999987
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.20 E-value=4.1 Score=43.49 Aligned_cols=67 Identities=16% Similarity=0.043 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFT 436 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 436 (857)
.++..++...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||.
T Consensus 281 ~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL---~P~~~t~~ 347 (372)
T 3ly7_A 281 QIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL---RPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCcChHH
Confidence 566666666789999999998888876 66767777777888888999888888877662 45555543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=90.36 E-value=0.91 Score=37.66 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=34.6
Q ss_pred HHHcCCCHHHHHHHHHHHhhCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 441 SSMDGGHIDDCISIFQHMKDHCEPNIG-TVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 441 a~~~~g~~~~A~~if~~m~~~~~p~~~-~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
.+.+.|++++|...|+...+..+.+.. .|..+..+|...|++++|.+.|++.....
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 444556666666666666553334455 66666666777777777777777766644
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.24 E-value=9.8 Score=34.07 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=93.9
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Q 003016 374 EGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCIS 453 (857)
Q Consensus 374 ~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 453 (857)
.|.+++..++..+.... .+..-||-+|.-....-+-+-.+++++.+-+. -| ...||++.....
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FD----------LDKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SC----------GGGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------cHhhhcHHHHHH
Confidence 46677777777776553 23344666666666666666666666655431 11 134666666666
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHH
Q 003016 454 IFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYF 533 (857)
Q Consensus 454 if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a 533 (857)
.+-.+. .+....+.-++.+...|.-++-.++..++... .+|+......+-.||.+.|+..++
T Consensus 83 C~~~~n----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--------------~~~~~~~l~kia~Ay~Klg~~r~a 144 (172)
T 1wy6_A 83 CGVINN----TLNEHVNKALDILVIQGKRDKLEEIGREILKN--------------NEVSASILVAIANALRRVGDERDA 144 (172)
T ss_dssp HHHHTT----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----------------CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhc----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--------------CCCChHHHHHHHHHHHHhcchhhH
Confidence 666554 36667777888888888888888888886442 457777777888888888888888
Q ss_pred HHHHHHHHHcCCC
Q 003016 534 EYVYKGMALSGCQ 546 (857)
Q Consensus 534 ~~l~~~m~~~g~~ 546 (857)
.+++.+.-+.|++
T Consensus 145 ~eLl~~AC~kG~k 157 (172)
T 1wy6_A 145 TTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhH
Confidence 8888888887763
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.48 E-value=14 Score=34.78 Aligned_cols=45 Identities=11% Similarity=-0.011 Sum_probs=26.7
Q ss_pred HHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003016 239 GKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERM 290 (857)
Q Consensus 239 ~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m 290 (857)
..+|+++.|.++-+.+ -+...|..|.....+.|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3456666666665444 24556666666666666666666666554
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.01 E-value=2.4 Score=35.35 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHcCCC---HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 003016 431 LEITFTGLIISSMDGGH---IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRAN 496 (857)
Q Consensus 431 d~~t~~~ll~a~~~~g~---~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g 496 (857)
|...+..+-.++...+. .++|..+|++....-+.++.....+-..+.+.|++++|+..|+++....
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444444433322 6888888888887556678888888888999999999999999998855
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=87.35 E-value=3.6 Score=33.78 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCcCCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHhHHc
Q 003016 197 LKGLGDKGSWRQAMSVLDWVYGLKDKRDLKSRF-VYTKLLAILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 197 l~a~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 257 (857)
...+...|+++.|...++.+++.. +.+.. .|..+-..|.+.|++++|...|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE----PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC----SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 445667788888888888887642 23666 7888888888888888888888888763
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.05 E-value=3.5 Score=37.95 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 003016 530 WEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAG---KCHLLEHAFDSLLEAGEIP--HPLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G---~~~~A~~~~~~m~~~gi~p--~~~~~~~li~~~~~~g~~~~A~ 604 (857)
...+.+-|.+....|. ++..+...+-.++.+.. +++++..+|+...+.. .| +...+..|--++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455666666666554 67777777777888888 6679999999888764 24 3455666777889999999999
Q ss_pred HHHHHhhhCCCccC
Q 003016 605 ALINAMAYAPFHIT 618 (857)
Q Consensus 605 ~l~~~M~~~~~~p~ 618 (857)
+.++.+.+ ++|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 99999763 3453
No 225
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.86 E-value=20 Score=39.46 Aligned_cols=190 Identities=9% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHH--HHHHHHHHHcCCC
Q 003016 375 GKINEAVAAVRNMEQ-----RGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEIT--FTGLIISSMDGGH 447 (857)
Q Consensus 375 g~~~~A~~lf~~m~~-----~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~a~~~~g~ 447 (857)
|++++|.+.+-.+.+ .+..........++..|...|+++...+.+.-+....|..+...+ ...++........
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 567777776655543 345666777888999999999999998888777765555544433 1222222222332
Q ss_pred HHH--HHHHHHHHhh---C-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCC-----
Q 003016 448 IDD--CISIFQHMKD---H-CEP---NIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPD----- 513 (857)
Q Consensus 448 ~~~--A~~if~~m~~---~-~~p---~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd----- 513 (857)
.+. -..+.+.... + +-. .......|...|-..|++.+|.+++.++...- ...+
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-------------~~~~~~~~k 176 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-------------YGSMEMSEK 176 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------CSSSCHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-------------HhcccHHHH
Confidence 222 2222222211 1 111 22344678888999999999999999987542 1121
Q ss_pred HhHhhhhHHHHHhcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 514 EYTYSSMLEASATAHQWEYFEYVYKGMAL----SGCQLDQ--TKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~l~~~m~~----~g~~pd~--~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
...|...+..|...+++..|..++..+.. ....|+. ..|...+..+.+.+++.+|.+.|.++.+
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 23566677788889999999999988643 1222222 3556666667889999999888877654
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=84.63 E-value=10 Score=31.38 Aligned_cols=66 Identities=15% Similarity=0.019 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHc
Q 003016 188 FTEGQMLKLLKGLGDKGS---WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLED 257 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~---~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 257 (857)
.|...+..+..++...++ .++|..+++..++.. +.++.....+-..+.+.|++++|+..|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455666666666654443 688888888887753 337778888888888889999999999888874
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=84.02 E-value=5.5 Score=36.60 Aligned_cols=48 Identities=13% Similarity=0.054 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHhhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 447 HIDDCISIFQHMKDHCEP--NIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 447 ~~~~A~~if~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
+++++..+|+...+...| +...+-.|--+|.+.|++++|.+.|+...+
T Consensus 50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 333444444444442112 123333344445555555555555555555
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=80.88 E-value=5.9 Score=40.66 Aligned_cols=97 Identities=15% Similarity=0.084 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHhHHcCCCCC--CHHHHHHHHHHHHhc
Q 003016 205 SWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKA-----GRPHEALRIFNLMLEDCNLYP--DIAAYHSVAVTLGQV 277 (857)
Q Consensus 205 ~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~-----g~~~~A~~vf~~m~~~~gi~p--d~~t~~~li~~~~~~ 277 (857)
....|+.+++++++..+. ..+-..|..|...|.+. |+.+.|.+.|++..+- .| +..++......+++.
T Consensus 178 ~l~~A~a~lerAleLDP~--~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L---nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPS--YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY---CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHHCTT--HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH---CCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhCCC--cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHh
Confidence 357788888888775321 11457899999999994 9999999999999873 47 388899999999885
Q ss_pred -CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCC--CCHHHHHHHH
Q 003016 278 -GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLE--PDLVVYNAVL 321 (857)
Q Consensus 278 -g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~--pd~~t~~~li 321 (857)
|+.+++.+.+++....+ .. |+....|.+-
T Consensus 253 ~gd~~~a~~~L~kAL~a~---------------p~~~P~~~lan~~~ 284 (301)
T 3u64_A 253 LNNRAGFDEALDRALAID---------------PESVPHNKLLVILS 284 (301)
T ss_dssp TTCHHHHHHHHHHHHHCC---------------GGGCSSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC---------------CCCCCChhHHHHHH
Confidence 99999999999999887 55 7766666553
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=80.72 E-value=5.8 Score=33.50 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCcCCC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHH
Q 003016 188 FTEGQMLKLLKGLGDKGSWRQAMSVLDWVYGLKDKR---DLKSRFVYTKLLAILGKAGRPHEALRIFNLMLE 256 (857)
Q Consensus 188 p~~~t~~~ll~a~~~~g~~~~A~~l~~~~~~~~~~~---~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 256 (857)
.+...+..+-..+-..|++..|...++.+.+..... ......++..|..+|.+.|+++.|...+++...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 455666777888888889999988888877643211 233567888999999999999999999998876
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=79.70 E-value=10 Score=38.82 Aligned_cols=92 Identities=9% Similarity=-0.086 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc-C
Q 003016 530 WEYFEYVYKGMALSGCQLD---QTKHAWLLVEASR-----AGKCHLLEHAFDSLLEAGEIP--HPLFFTEMLIQAIVQ-S 598 (857)
Q Consensus 530 ~~~a~~l~~~m~~~g~~pd---~~t~~~Ll~~~~~-----~G~~~~A~~~~~~m~~~gi~p--~~~~~~~li~~~~~~-g 598 (857)
...|..++++.++ +.|+ ...|..+...|.. -|+.++|.+.|++..+. .| +..++...-..+++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 5666667777766 5677 5588888888988 49999999999999885 45 366777777888885 9
Q ss_pred CHHHHHHHHHHhhhCCCc--cCHHHHHHH
Q 003016 599 NYEKAVALINAMAYAPFH--ITERQWTEL 625 (857)
Q Consensus 599 ~~~~A~~l~~~M~~~~~~--p~~~~~~~L 625 (857)
+.++|.+.+++.+..+.. |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999888777 776555544
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.32 E-value=16 Score=30.73 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=30.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLR-----HSKPLEITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
+-.|...+.+.|++..|...|+...... .-.+....+..+..+|.+.|+++.|...++...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555555555443311 0112334455555555555555555555555544
No 232
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.15 E-value=36 Score=36.49 Aligned_cols=129 Identities=11% Similarity=0.006 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHhHHcCCCCCCH
Q 003016 189 TEGQMLKLLKGLG---DKGSWRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPH-EALRIFNLMLEDCNLYPDI 264 (857)
Q Consensus 189 ~~~t~~~ll~a~~---~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~-~A~~vf~~m~~~~gi~pd~ 264 (857)
|...|..++.... ..|+.+.|...+..++..-.....++.. ...+- ....-++++..
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~-------- 171 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV-------- 171 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH--------
Confidence 4444545444332 3477888888887776542111122210 01111 11222333322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--
Q 003016 265 AAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK-- 342 (857)
Q Consensus 265 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~-- 342 (857)
.....++..+...|++.+|...+..+... .+-+...|..+|.++.+.|+..+|++.|+.+.+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~----------------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE----------------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 24455677888899999999888888764 345888999999999999999999999988754
Q ss_pred ---cCCCCCHHHH
Q 003016 343 ---SGLKPSAATY 352 (857)
Q Consensus 343 ---~g~~pd~~t~ 352 (857)
.|+.|+..+-
T Consensus 236 ~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 236 ADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHSCCCCHHHH
T ss_pred HHHhCCCCCHHHH
Confidence 4999998763
No 233
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.34 E-value=8.1 Score=32.59 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAML 473 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li 473 (857)
++..-++.+.. ..+.|+.....+.+.||.+..++..|.++|+.++.++.+...+|..++
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 33444444444 455666666666666666666666666666666654444444455544
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=72.01 E-value=27 Score=30.85 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHH
Q 003016 529 QWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHL---LEHAFDSLLEAGEIP--HPLFFTEMLIQAIVQSNYEKA 603 (857)
Q Consensus 529 ~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~---A~~~~~~m~~~gi~p--~~~~~~~li~~~~~~g~~~~A 603 (857)
.+..+.+-|......|. |+..+-..+..++.++....+ +..+++.+...+ .| .......|--++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34445555665555454 666666667777888877766 778887776653 23 233444566788899999999
Q ss_pred HHHHHHhhh
Q 003016 604 VALINAMAY 612 (857)
Q Consensus 604 ~~l~~~M~~ 612 (857)
.+.++.+++
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998763
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.51 E-value=14 Score=39.92 Aligned_cols=57 Identities=14% Similarity=0.042 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC-CHhHhhhhHHHHHhcCCHHHHHHHHHHHH
Q 003016 470 NAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP-DEYTYSSMLEASATAHQWEYFEYVYKGMA 541 (857)
Q Consensus 470 ~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p-d~~t~~~ll~a~~~~g~~~~a~~l~~~m~ 541 (857)
..++..+...|++.+|......+.... | ++..|..+|.++...|+..+|++.|+...
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~---------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH---------------PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666665533 3 55566666666666666666666665543
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.66 E-value=1.3e+02 Score=32.87 Aligned_cols=197 Identities=10% Similarity=0.137 Sum_probs=113.0
Q ss_pred CCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHH
Q 003016 278 GLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK-SGLKPSAATYGLAM 356 (857)
Q Consensus 278 g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll 356 (857)
|++++|++.+-.+.+.. +.. ............++..|...++++...+.+..+.+ +|..+...+. ++
T Consensus 30 ~~~~~a~e~ll~lEK~~--------r~~--~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~--~V 97 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKT--------RQA--SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY--MI 97 (445)
T ss_dssp HHHHHHHHHHHHHHHHH--------SSS--CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH--HH
T ss_pred CCHHHHHHHHHHHHHHh--------hhc--cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH--HH
Confidence 56777777665554321 000 01344566778899999999999988887776644 3443333322 11
Q ss_pred HHHHHhHHHHHHHHHHHcCCHHHH--HHHHHHHh---hcCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC
Q 003016 357 ESYRRCLLKVLVRAFWEEGKINEA--VAAVRNME---QRGVVG---TASVYYELACCLCNNGRWQDAMLVVEKIKSL-RH 427 (857)
Q Consensus 357 ~~~~~~~~~~Li~~y~k~g~~~~A--~~lf~~m~---~~~~~~---d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~-~g 427 (857)
+.++.........+.. ..+.+... +.-+.. .......|...|...|++.+|..++.++... .+
T Consensus 98 --------~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~ 169 (445)
T 4b4t_P 98 --------QKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG 169 (445)
T ss_dssp --------HHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred --------HHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 2333333333332221 12222111 111111 1233456777788888888888888887652 22
Q ss_pred CCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHhh---C--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 428 SKPL---EITFTGLIISSMDGGHIDDCISIFQHMKD---H--CEPN--IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 428 ~~pd---~~t~~~ll~a~~~~g~~~~A~~if~~m~~---~--~~p~--~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.... ...+...+..|...+++..|..+...+.. . ..|+ ...+..++..+...+++.+|.+.|.+...
T Consensus 170 ~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 170 SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 2222 23466777788888888888888887643 1 2222 24567777777888888888777776643
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=70.56 E-value=49 Score=30.20 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHc
Q 003016 464 PNIGTVNAMLKVYSRNDMF------SKAKELFEETTRA 495 (857)
Q Consensus 464 p~~~~~~~li~~~~~~g~~------~~A~~lf~~M~~~ 495 (857)
.|..+|-..+...-+.|+. ++.+++|++....
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~ 48 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA 48 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc
Confidence 5778888888888888888 8888899887764
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.56 E-value=35 Score=31.21 Aligned_cols=112 Identities=12% Similarity=-0.035 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHhHHHHHHHHHHHcCCHHHHHHH
Q 003016 311 EPDLVVYNAVLNACVPSHQW------KGVFWVFKQLRKSGLKPSAATY-GLAMESYRRCLLKVLVRAFWEEGKINEAVAA 383 (857)
Q Consensus 311 ~pd~~t~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~t~-~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~l 383 (857)
+-|..+|-..+...-+.|+. +..+++|++.... ++|+...+ ...+..+. .-++. ...+++++|.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWI---rYA~~---~ei~D~d~aR~v 82 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQV---RFAEL---KAIQEPDDARDY 82 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHH---HHHHH---HHHHCGGGCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHH---HHHHH---HHhcCHHHHHHH
Confidence 44788888888888888998 8888899888763 56653211 11111111 01111 233777888888
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCc
Q 003016 384 VRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPL 431 (857)
Q Consensus 384 f~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd 431 (857)
|+.+....-.. ...|.....--.+.|+...|.+++..... .+.+|.
T Consensus 83 y~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~ 128 (161)
T 4h7y_A 83 FQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPL 128 (161)
T ss_dssp HHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCH
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcH
Confidence 88775442222 56666666666677777777777777665 444443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=67.92 E-value=53 Score=38.50 Aligned_cols=128 Identities=9% Similarity=-0.014 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC-HHHHHHHHHHHHhCc----CCCCCCCH--
Q 003016 159 RVLVDRLSEREM-TAKNWKFVRIMNQSGLMFTEGQ--MLKLLKGLGDKGS-WRQAMSVLDWVYGLK----DKRDLKSR-- 228 (857)
Q Consensus 159 ~~l~~~l~~~~~-~~~A~~l~~~M~~~g~~p~~~t--~~~ll~a~~~~g~-~~~A~~l~~~~~~~~----~~~~~~~~-- 228 (857)
..+++-+...+. ++.|+.+|+.+.... |...+ ...++..+...++ --+|.++....++.. ......+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 455555555555 588999999998865 43332 2334444433332 223444444333210 00011121
Q ss_pred --------HHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 229 --------FVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYP-DIAAYHSVAVTLGQVGLLKELVKLIERMR 291 (857)
Q Consensus 229 --------~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~p-d~~t~~~li~~~~~~g~~~~A~~l~~~m~ 291 (857)
...+.-...+...|+++.|+.+-.+...- .| +..+|-.|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12223344566789999999999988763 35 58899999999999999999999998874
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=66.00 E-value=0.0015 Score=71.21 Aligned_cols=263 Identities=13% Similarity=0.131 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 264 IAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 264 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
+..|..|..+....+...+|.+-|-+ .-|+..|..+|.++.+.|.+++-...+...++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk---------------------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK---------------------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC---------------------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh---------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45688888888888877777665521 235556888999999999999988888777776
Q ss_pred CCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 003016 344 GLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIK 423 (857)
Q Consensus 344 g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~ 423 (857)
.-.|.+. +.|+-+|++.+++.+-++++.. |+..-...+..-|...|.++.|.-+|..+.
T Consensus 113 ~ke~~ID--------------teLi~ayAk~~rL~elEefl~~-------~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 113 ARESYVE--------------TELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp CCSTTTT--------------HHHHHHHHTSCSSSTTTSTTSC-------CSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred hcccccH--------------HHHHHHHHhhCcHHHHHHHHcC-------CCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 5566555 6899999999987664443321 332224556667777777777766665443
Q ss_pred hcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccc
Q 003016 424 SLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFL 503 (857)
Q Consensus 424 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~ 503 (857)
. |.-|...+.+.|++..|.+.-+ -..++.||--+-.+|...+.+.-|.-.--.+.
T Consensus 172 N----------~akLAstLV~L~~yq~AVdaAr-----KAns~ktWKeV~~ACvd~~EfrLAqicGLniI---------- 226 (624)
T 3lvg_A 172 N----------FGRLASTLVHLGEYQAAVDGAR-----KANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---------- 226 (624)
T ss_dssp C----------CTTTSSSSSSCSGGGSSTTTTT-----TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH----------
T ss_pred c----------HHHHHHHHHHHHHHHHHHHHHH-----hcCChhHHHHHHHHHhCchHHHHHHHhcchhc----------
Confidence 2 2222233344444444432211 12456677777777777777666544433333
Q ss_pred CCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCC
Q 003016 504 SGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGC-QLDQTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEI 581 (857)
Q Consensus 504 ~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~-~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~ 581 (857)
+.|| -...++.-|-..|.+++-+.+++.-. |. .....+|+-|--.|++- +.++.++.++..-.+ +++
T Consensus 227 ------vhad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip 295 (624)
T 3lvg_A 227 ------VHAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP 295 (624)
T ss_dssp ------CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT
T ss_pred ------ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH
Confidence 2222 23345555666677776666666543 22 23345666666666654 333333333322222 222
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHHH
Q 003016 582 P------HPLFFTEMLIQAIVQSNYEKAV 604 (857)
Q Consensus 582 p------~~~~~~~li~~~~~~g~~~~A~ 604 (857)
- ....|..++-.|.+-..++.|.
T Consensus 296 KviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 296 KVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 1 3445666666666666666553
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=65.44 E-value=24 Score=41.40 Aligned_cols=129 Identities=6% Similarity=0.044 Sum_probs=84.0
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc-----CCCCC-cH--H-
Q 003016 365 KVLVRAFWEEGK-INEAVAAVRNMEQRGVVGTASVYYELACCLCNNGR-WQDAMLVVEKIKSL-----RHSKP-LE--I- 433 (857)
Q Consensus 365 ~~Li~~y~k~g~-~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~-~~~A~~l~~~m~~~-----~g~~p-d~--~- 433 (857)
.+|+..+...++ .+.|..+|+++...+...+.....++|..+.+.+. --+|..++.+..+. ....+ +. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455655555666 68899999999887654433333344444444332 23455555544320 01111 11 0
Q ss_pred --HH-HHHH----HHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003016 434 --TF-TGLI----ISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETT 493 (857)
Q Consensus 434 --t~-~~ll----~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~ 493 (857)
.+ ..|+ .-|...|+++.|..+-+....-.+-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 1122 335678999999999999887666678999999999999999999999998875
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.76 E-value=18 Score=32.20 Aligned_cols=60 Identities=8% Similarity=0.104 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 003016 414 DAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLK 474 (857)
Q Consensus 414 ~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~ 474 (857)
+...-++.+.. ..+.|+.....+.|.+|.+..++..|.++|+.++.++.+....|..+++
T Consensus 71 ElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 34444444444 5677888888888888888888888888888877765555556666654
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=63.31 E-value=2.5e+02 Score=33.68 Aligned_cols=316 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHcCChhHHHHHHHHhHHcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCCCCC-----
Q 003016 237 ILGKAGRPHEALRIFNLMLEDC-NLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWDPVL----- 310 (857)
Q Consensus 237 ~y~k~g~~~~A~~vf~~m~~~~-gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~~~~----- 310 (857)
+....|+.++++.+++.-.... .-.+.+..-..+.-|....|..+++..++....... -
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~---------------~~~~~~ 447 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVEN---------------SGTSGD 447 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHH---------------SSCCSC
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCc---------------cccccc
Q ss_pred --CCCHHHHHHHHHHHHhcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 311 --EPDLVVYNAVLNACVPSHQWK-GVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 311 --~pd~~t~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+....-.++--+.+-.|.-. ++.+.+..+....-. ......++ +|--.|.-.|+-+....++..+
T Consensus 448 ~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~--~~~~~Aal---------ALGli~vGTgn~~ai~~LL~~~ 516 (963)
T 4ady_A 448 EDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA--TSGEAAAL---------GMGLCMLGTGKPEAIHDMFTYS 516 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH--HHHHHHHH---------HHHHHHTTCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH--HHHHHHHH---------HHhhhhcccCCHHHHHHHHHHH
Q ss_pred hhcCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCC
Q 003016 388 EQRGVVGTASVYYELACCLC--NNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPN 465 (857)
Q Consensus 388 ~~~~~~~d~~t~~~lI~~~~--~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~ 465 (857)
.+.. +..+.-.+..+++ ..|+.+.+..+.+.+........-.....++.-+|+-.|+.....+++..+......+
T Consensus 517 ~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~ 593 (963)
T 4ady_A 517 QETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDD 593 (963)
T ss_dssp HHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHH
T ss_pred hccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCH-HHHHHHHHHHHHcC
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQW-EYFEYVYKGMALSG 544 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~-~~a~~l~~~m~~~g 544 (857)
+.-...+--++.-.|+.+.+.+++..+...+ .|.+.--.++.-|....|.. ..+..++..+.
T Consensus 594 VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--------------d~~VR~gAalALGli~aGn~~~~aid~L~~L~--- 656 (963)
T 4ady_A 594 VRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--------------NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT--- 656 (963)
T ss_dssp HHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--------------CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--------------CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc---
Q ss_pred CCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcC
Q 003016 545 CQLDQTKHAWLLVEASRAG---------KCHLLEHAFDSLLEA-GEIPHPLFFTEMLIQAIVQS 598 (857)
Q Consensus 545 ~~pd~~t~~~Ll~~~~~~G---------~~~~A~~~~~~m~~~-gi~p~~~~~~~li~~~~~~g 598 (857)
..+|..+-..-+.+++..| ++....+.+...... .-.++...-..+-.+....|
T Consensus 657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=63.07 E-value=44 Score=29.48 Aligned_cols=65 Identities=12% Similarity=-0.027 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHHcCCCHHH---HHHHHHHHhhCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 430 PLEITFTGLIISSMDGGHIDD---CISIFQHMKDHCEP--NIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 430 pd~~t~~~ll~a~~~~g~~~~---A~~if~~m~~~~~p--~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
|+..+-..+.-++.++..... +..++..+.+...| .....-.|--++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333333333344444444333 55555555442212 222333445566677777777777777766
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=62.98 E-value=29 Score=29.30 Aligned_cols=67 Identities=9% Similarity=0.036 Sum_probs=54.3
Q ss_pred HHcC-CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 003016 372 WEEG-KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 440 (857)
Q Consensus 372 ~k~g-~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 440 (857)
.+.. +.-+.++-++.+-..+++|+..+..+.+.+|-+..++..|+.+|+.++.+.+.. ..+|..+++
T Consensus 20 ~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 20 NKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp TCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred CCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 3444 566788888899999999999999999999999999999999999999854443 345665554
No 246
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=60.57 E-value=0.0087 Score=65.31 Aligned_cols=211 Identities=17% Similarity=0.201 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCChhhhhhhhhcCC
Q 003016 228 RFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKPSKRIKNMHRKNWD 307 (857)
Q Consensus 228 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~l~~m~~k~f~ 307 (857)
..+|+.|-.++.+.+++.+|++-|-+. -|+..|..+|.+..+.|.+++-...+...++..
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~------------- 113 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA------------- 113 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC-------------
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-------------
Confidence 347888888888888888887665332 356678888888888888888888776655432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003016 308 PVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNM 387 (857)
Q Consensus 308 ~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m 387 (857)
.+...=+.|+-+|++.+++.+-.+++. .||..-. ..+-+-|...|.++.|.-+|..+
T Consensus 114 ----ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~i------------q~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 114 ----RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHI------------QQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp ----CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCT------------HHHHHHHHHSCCSTTSSTTGGGS
T ss_pred ----cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccH------------HHHHHHHHHccCHHHHHHHHHhC
Confidence 233334568888888888765443322 3554443 56777777888888888777766
Q ss_pred hhcCC--------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC
Q 003016 388 EQRGV--------------------VGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH 447 (857)
Q Consensus 388 ~~~~~--------------------~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~ 447 (857)
..-.- ..++.||-.+-.+|...+.+.-|.-.--.+.- .|| -...++..|-+.|.
T Consensus 171 sN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv----had--eL~elv~~YE~~G~ 244 (624)
T 3lvg_A 171 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HAD--ELEELINYYQDRGY 244 (624)
T ss_dssp CCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSS--CCSGGGSSSSTTCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHH--HHHHHHHHHHhCCC
Confidence 43210 12345677777777777766555332222211 111 12235556777888
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003016 448 IDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKEL 488 (857)
Q Consensus 448 ~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 488 (857)
+++-+.+++.-...-......|+-|.-.|++-. +++-.+-
T Consensus 245 f~ELIsLlEaglglErAHmGmFTELaILYsKY~-PeKlmEH 284 (624)
T 3lvg_A 245 FEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 284 (624)
T ss_dssp CTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC-TTHHHHH
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC-HHHHHHH
Confidence 888888887776434467888888888888874 3443333
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.00 E-value=59 Score=40.42 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 316 VYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 316 t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
.|..+..++...|++++|...+-.+...
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 3555555555555555555555554443
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.61 E-value=2e+02 Score=30.68 Aligned_cols=242 Identities=10% Similarity=0.022 Sum_probs=123.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHcC-CCHHHHHHHHHHHhhC--CCCCHH----H
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI---TFTGLIISSMDG-GHIDDCISIFQHMKDH--CEPNIG----T 468 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~---t~~~ll~a~~~~-g~~~~A~~if~~m~~~--~~p~~~----~ 468 (857)
...|...|.+.|+.++..+++......-+..|-.. ....+|+.+... +..+.-.++..+..+- -..-.. .
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554433111122221 244555555442 2223333333222220 001111 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCH-----hHhhhhHHHHHhcCCHHHHHHHHHHHHHc
Q 003016 469 VNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDE-----YTYSSMLEASATAHQWEYFEYVYKGMALS 543 (857)
Q Consensus 469 ~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~-----~t~~~ll~a~~~~g~~~~a~~l~~~m~~~ 543 (857)
=.-++..|...|++.+|.+++.++.+.- -+.|. ..+..-+..|...+++..+...+......
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~-------------~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLREL-------------KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH-------------hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 2367899999999999999999988753 12222 23556667788889999999999877643
Q ss_pred --CCCCCHHHHHHH--HHH--HH-HcCCHHHHHHHHHHHHHC-C-C-CC---CHHHHHHHHHHHHHcCCHHHHHHHHH-H
Q 003016 544 --GCQLDQTKHAWL--LVE--AS-RAGKCHLLEHAFDSLLEA-G-E-IP---HPLFFTEMLIQAIVQSNYEKAVALIN-A 609 (857)
Q Consensus 544 --g~~pd~~t~~~L--l~~--~~-~~G~~~~A~~~~~~m~~~-g-i-~p---~~~~~~~li~~~~~~g~~~~A~~l~~-~ 609 (857)
.+.+++.+...+ ..| +. ..+++..|...|-+..+. . . .| +...|.. +.+.. .++..+--.++. .
T Consensus 169 ~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl-~~~r~el~~~l~~~ 246 (394)
T 3txn_A 169 ANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIM-LGQSDDVNQLVSGK 246 (394)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHH-TTCGGGHHHHHHSH
T ss_pred hccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHH-cCCHHHHHHHhccc
Confidence 333555433222 222 34 689999998888665421 1 1 11 1223322 22222 233222222222 1
Q ss_pred hhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCCChhhHH
Q 003016 610 MAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNCNAASSEITVS 658 (857)
Q Consensus 610 M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p~~~~~~ 658 (857)
....-..|....+..|+.++ ..+++.....+++.... .+. .++.+.
T Consensus 247 ~~~~~~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~-~D~~l~ 292 (394)
T 3txn_A 247 LAITYSGRDIDAMKSVAEAS-HKRSLADFQAALKEYKK-ELA-EDVIVQ 292 (394)
T ss_dssp HHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTT-TSHHHH
T ss_pred cccccCCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHh-cChHHH
Confidence 11111346555666777765 44677777777665432 234 455544
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.33 E-value=1.2e+02 Score=37.59 Aligned_cols=164 Identities=9% Similarity=-0.017 Sum_probs=87.8
Q ss_pred HHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--Chhhhhhh---hhc--C
Q 003016 234 LLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQVGLLKELVKLIERMRQKP--SKRIKNMH---RKN--W 306 (857)
Q Consensus 234 Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~~l~~m~---~k~--f 306 (857)
++..+.+.+..+.|.++..... .+..+--.+..+|...|++++|.++|.+.-..- ...+...- ..+ .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4455566677777776555443 355444456678889999999999998753210 00000000 000 0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 003016 307 DPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRN 386 (857)
Q Consensus 307 ~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~ 386 (857)
......-..-|..++..+-+.+.++.+.++-....+..-.-+.. .. ...|..+.+.+...|++++|...+-.
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~-~~-------~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED-LS-------IAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH-HH-------HHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh-hH-------HHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 00011112335666777777777777776666555432211111 00 01246666777777777777777766
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHCCCHH
Q 003016 387 MEQRGVVGTASVYYELACCLCNNGRWQ 413 (857)
Q Consensus 387 m~~~~~~~d~~t~~~lI~~~~~~g~~~ 413 (857)
++..... ......+|..+|..|+.+
T Consensus 964 ~pd~~~r--~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 964 LSTTPLK--KSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred CCCHHHH--HHHHHHHHHHHHhCCChh
Confidence 6654433 233555566566555544
No 250
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.90 E-value=1e+02 Score=29.42 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=50.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 003016 327 SHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 327 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~ 394 (857)
.++...+..+|..|...|+.-....| |-.....+-..|++.+|.++|+.=.+++..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~Alf-----------Ye~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLF-----------YEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45577999999999999998887776 7888888999999999999999999999898
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=52.48 E-value=76 Score=29.37 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=59.1
Q ss_pred cCCCCCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH-------HHHHHHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 390 RGVVGTASVYYE--LACCLCNNGRWQDAMLVVEKIKSLRHSKPLE-------ITFTGLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 390 ~~~~~d~~t~~~--lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-------~t~~~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.|++|....|+. -+..+...|.++.|.-+.+.+....+..|+. .++..+-+++...|++..|...|+....
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345554444443 2566677777777776666544422222331 2455666777777777777777777532
Q ss_pred ---CCC----------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 461 ---HCE----------------------PNIGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 461 ---~~~----------------------p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
.+. .+...---+-.+|.+.+++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111 1123334477788999999999999887543
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=49.61 E-value=62 Score=28.84 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Q 003016 376 KINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLII 440 (857)
Q Consensus 376 ~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 440 (857)
+.-+..+-++.+-..+++|+..+..+.+.+|-+.+++..|+.+|+-.+.+.|.. ..+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 555777888888889999999999999999999999999999999999854433 445665554
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.56 E-value=21 Score=35.61 Aligned_cols=251 Identities=11% Similarity=0.028 Sum_probs=118.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLE---ITFTGLIIS 441 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~---~t~~~ll~a 441 (857)
++.+...++.|+++....+++.-..-+...+..-+ +.+...+..|+.+-+..+ .+ .|..++. ...+ .+..
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L----l~-~g~~~~~~~~~g~t-~L~~ 78 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELL----LR-HGADPVLRKKNGAT-PFLL 78 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHHHHHHH----HH-TTCCTTCCCTTCCC-HHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHH----HH-cCCCCcccCCCCCC-HHHH
Confidence 56677778889988777666542222211111112 234555677877644444 33 4544432 2222 3334
Q ss_pred HHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh------
Q 003016 442 SMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY------ 515 (857)
Q Consensus 442 ~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~------ 515 (857)
.+..|+.+-+..+++.-..-..++..-++ .+...++.|+.+- ++.+.+.| ..++..
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----~~~Ll~~g-------------~~~~~~~~~~~~ 140 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKA----LKFLYKRG-------------ANVNLRRKTKED 140 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHH----HHHHHHTT-------------CCTTCCCCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHH----HHHHHHhC-------------CCcccccccHHH
Confidence 44567776665555431110111222222 3344556777554 44444445 222211
Q ss_pred ------HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-
Q 003016 516 ------TYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQ---TKHAWLLVEASRAGKCHLLEHAFDSLLEAGEIPHPL- 585 (857)
Q Consensus 516 ------t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~---~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p~~~- 585 (857)
.-.+.+...+..|+.+.+..+++. .|..++. .-.+.+.. .+..|......++++.+.+.|..++..
T Consensus 141 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 216 (285)
T 1wdy_A 141 QERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRG 216 (285)
T ss_dssp HHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCC
T ss_pred HHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcC
Confidence 112344445566777655544432 1554432 12223333 344566555567777777777655422
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH---HHHHHHHHHhhhccCHHHHHHHHHHHHhCCCCC
Q 003016 586 -FFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE---RQWTELFESNEDRISRDKLEKLLNALCNCNAAS 652 (857)
Q Consensus 586 -~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~---~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~g~~p 652 (857)
.-.+.+...++.|+.+-+..+++.. |..++. .-.+.|.-| ...|..+ +.+.+.+.|..|
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~---g~~~~~~~~~g~t~l~~A-~~~~~~~----i~~~Ll~~Ga~~ 279 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLA-VELKLKK----IAELLCKRGAST 279 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSS---SCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHHSSCS
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcc---CCCccccCCCCCcHHHHH-HHcCcHH----HHHHHHHcCCCC
Confidence 1122344555678877665555532 333332 222233333 3445544 444555566554
No 254
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=45.21 E-value=11 Score=33.57 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.6
Q ss_pred ChHHHHHHHhcCCCCChHHHHHhhHH
Q 003016 1 MEKIKQKLLKHGVFPTPKILRSIRKK 26 (857)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (857)
+|-||.-...|||+|.|+.|-+.+|-
T Consensus 37 VE~LRkDV~~RgvrP~~~ql~~v~kd 62 (141)
T 3okq_A 37 IEIMRKDVAERRSQPAKKKLETVSKD 62 (141)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47899999999999999999777754
No 255
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.63 E-value=1.8e+02 Score=26.38 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~ 394 (857)
..+..+|..|...|+......| |.+....+-..|++.+|.++|+.=.+++..|
T Consensus 82 ~dp~~if~~L~~~~IG~~~Alf-----------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPL-----------YIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3488999999999988877776 6888888889999999999999988888888
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.90 E-value=1.6e+02 Score=31.76 Aligned_cols=94 Identities=9% Similarity=0.034 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCCcHHH----HH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--ASVYYELACCLCNNGRWQDAMLVVEKIKSL--RHSKPLEIT----FT 436 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~--~g~~pd~~t----~~ 436 (857)
..+...|.++|+++.|.+.|.++......+. ...|-..|..+...+++..|...+.+.... .+..|+... |.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 6788999999999999999999987543332 456777889999999999999999887652 233333322 22
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHhh
Q 003016 437 GLIISSMDGGHIDDCISIFQHMKD 460 (857)
Q Consensus 437 ~ll~a~~~~g~~~~A~~if~~m~~ 460 (857)
.+ .+...+++..|.+.|-+...
T Consensus 215 gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 215 GI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HH--GGGGTSCHHHHHHHHHHHHH
T ss_pred HH--HHHHhChHHHHHHHHHHHhc
Confidence 22 23467889999888877765
No 257
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=40.59 E-value=2.9e+02 Score=29.01 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc--CHHHHHHHHHHHHhCCCC
Q 003016 587 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI--SRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g--~~e~~~~l~~~m~~~g~~ 651 (857)
...+|.-|...|+.++|.+.++++..-.+.+ ..+...+..+.-+.+ ..+.+-+++..+.+.|+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 4566777777888888888888874222222 233444444554432 345677777777777776
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=37.25 E-value=3.6e+02 Score=27.65 Aligned_cols=152 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH------------------------HHHCCCCCCHHHHHHHHHHHHhcC-----C
Q 003016 155 AEAIRVLVDRLSEREMTAKNWKFVRI------------------------MNQSGLMFTEGQMLKLLKGLGDKG-----S 205 (857)
Q Consensus 155 ~~~~~~l~~~l~~~~~~~~A~~l~~~------------------------M~~~g~~p~~~t~~~ll~a~~~~g-----~ 205 (857)
...++++..++.+++.+++|++++.. ..+.+++++......++..+.... .
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r 112 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNL 112 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchH
Q ss_pred HHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHhHHcCCCCCCHHHHHHHHHHHHhc---CCHHH
Q 003016 206 WRQAMSVLDWVYGLKDKRDLKSRFVYTKLLAILGKAGRPHEALRIFNLMLEDCNLYPDIAAYHSVAVTLGQV---GLLKE 282 (857)
Q Consensus 206 ~~~A~~l~~~~~~~~~~~~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~gi~pd~~t~~~li~~~~~~---g~~~~ 282 (857)
..-..+...|..+.+..... +......+-..|.+.|++.+|+.-|-.-.. -|...+..|+.-+... |...+
T Consensus 113 ~~fi~~ai~WS~~~g~~~~G-dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~-----~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 113 KDVITGMNNWSIKFSEYKFG-DPYLHNTIGSKLLEGDFVYEAERYFMLGTH-----DSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp HHHHHHHHHHHHHTSSCTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCH-----HHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHhCCC-----ccHHHHHHHHHHHHHhcCCCCcch
Q ss_pred HHHHHHHHHcCCChhhhhhhhhcCCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003016 283 LVKLIERMRQKPSKRIKNMHRKNWDPVLEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRK 342 (857)
Q Consensus 283 A~~l~~~m~~~g~~~l~~m~~k~f~~~~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 342 (857)
+--..-+. +-.|.-.|+...|..+|....+
T Consensus 187 ~dlf~~Ra------------------------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 187 VAEFFSRL------------------------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH------------------------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------------HHHHHHhcCHHHHHHHHHHHHH
No 259
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=36.86 E-value=12 Score=27.34 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.3
Q ss_pred hHHHHHHHhcCCCCChHHHHHhhHH
Q 003016 2 EKIKQKLLKHGVFPTPKILRSIRKK 26 (857)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (857)
+.||..|.+.|+.|.| |..+=||.
T Consensus 9 ~eLr~~L~~~G~~~GP-It~sTRkl 32 (53)
T 1jei_A 9 TELTTLLRRYNIPHGP-VVGSTRRL 32 (53)
T ss_dssp HHHHHHHSSSCCSCCC-CCSGGGHH
T ss_pred HHHHHHHHHhCCCCCC-CCcccHHH
Confidence 4699999999999999 67777765
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.70 E-value=1.8e+02 Score=31.35 Aligned_cols=97 Identities=7% Similarity=-0.096 Sum_probs=65.8
Q ss_pred HhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHH--
Q 003016 516 TYSSMLEASATAHQWEYFEYVYKGMALSGCQLD--QTKHAWLLVEASRAGKCHLLEHAFDSLLEA-GEIPHPLFFTEM-- 590 (857)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd--~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~~-gi~p~~~~~~~l-- 590 (857)
++..+..-|.+.|+++.|.+.+.++......+. ...+-.++..+...+++..+....+..... .-.++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 555677788889999999999999987543333 447778888888899999999998887653 112232222211
Q ss_pred --HHHHHHcCCHHHHHHHHHHhhh
Q 003016 591 --LIQAIVQSNYEKAVALINAMAY 612 (857)
Q Consensus 591 --i~~~~~~g~~~~A~~l~~~M~~ 612 (857)
...+...+++.+|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122235889888888777543
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=34.56 E-value=1.8e+02 Score=24.46 Aligned_cols=32 Identities=19% Similarity=0.086 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKS 343 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 343 (857)
..||...|-++-. .+.|..+.+..-+..+...
T Consensus 67 c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 67 AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555544422 2344444444444444433
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=33.40 E-value=2.2e+02 Score=23.98 Aligned_cols=78 Identities=14% Similarity=0.105 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003016 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFE 490 (857)
Q Consensus 411 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~ 490 (857)
+.++|..+-+-+.. .+. ...+--.-+..+...|++++|..+.+.+. .||.+.|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHL-KGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555544 222 22222222344566777777776665443 477777776644 46676666666666
Q ss_pred HHHHcC
Q 003016 491 ETTRAN 496 (857)
Q Consensus 491 ~M~~~g 496 (857)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=30.72 E-value=1.7e+02 Score=24.50 Aligned_cols=33 Identities=15% Similarity=-0.081 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003016 310 LEPDLVVYNAVLNACVPSHQWKGVFWVFKQLRKSG 344 (857)
Q Consensus 310 ~~pd~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 344 (857)
..||...|-++-. .+.|..+.+..-+..+...|
T Consensus 66 c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 66 PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 4555555544422 24444444444444444433
No 264
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.63 E-value=3.2e+02 Score=25.09 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~ 394 (857)
+....+|..|...|+.-....| |-.....+-..|++.+|.++|+.=.+++..|
T Consensus 77 ~~p~~if~~L~~~~IG~~~Alf-----------Y~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQF-----------YISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCcchhhHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3477899999999988887776 6788888889999999999999988888888
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=30.35 E-value=2.6e+02 Score=24.75 Aligned_cols=72 Identities=7% Similarity=0.007 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCH
Q 003016 546 QLDQTKHAWLLVEASRAGKC---HLLEHAFDSLLEAGEIPHPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITE 619 (857)
Q Consensus 546 ~pd~~t~~~Ll~~~~~~G~~---~~A~~~~~~m~~~gi~p~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~ 619 (857)
.|+..+--.+..++.++... .++..+++.+.+.+-.-....+.-|--++.+.|++++|.+..+.+. .+.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCC
Confidence 44444444444555555544 3466666666554311123455556667777777777777777765 344544
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=30.03 E-value=58 Score=32.18 Aligned_cols=181 Identities=9% Similarity=-0.021 Sum_probs=85.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCC---
Q 003016 319 AVLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVGT--- 395 (857)
Q Consensus 319 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d--- 395 (857)
+.+...+..|+.+ +++.+.+.|..++..... ..+.+...+..|+.+-+..+++ .|..++
T Consensus 41 t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~ 102 (285)
T 1wdy_A 41 TPLHNAVQMSRED----IVELLLRHGADPVLRKKN----------GATPFLLAAIAGSVKLLKLFLS----KGADVNECD 102 (285)
T ss_dssp CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHH----TTCCTTCBC
T ss_pred cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHH----cCCCCCccC
Confidence 3455556667764 455556667665432210 0234445556677665554444 343322
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHH------------HHHHHHHHHHcCCCHHHHHHHHHHHhhC-C
Q 003016 396 ASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEI------------TFTGLIISSMDGGHIDDCISIFQHMKDH-C 462 (857)
Q Consensus 396 ~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~------------t~~~ll~a~~~~g~~~~A~~if~~m~~~-~ 462 (857)
..-++ .+...+..|+.+-+..++ + .|..++.. .-.+.+...+..|+.+-+..+++..... .
T Consensus 103 ~~g~t-~L~~A~~~~~~~~~~~Ll----~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~ 176 (285)
T 1wdy_A 103 FYGFT-AFMEAAVYGKVKALKFLY----K-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176 (285)
T ss_dssp TTCCB-HHHHHHHTTCHHHHHHHH----H-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT
T ss_pred cccCC-HHHHHHHhCCHHHHHHHH----H-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence 11122 233445667765444333 3 34433321 0113344455567777766666542211 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHh--HhhhhHHHHHhcCCHHHHHHHH
Q 003016 463 EPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEY--TYSSMLEASATAHQWEYFEYVY 537 (857)
Q Consensus 463 ~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~--t~~~ll~a~~~~g~~~~a~~l~ 537 (857)
..+..-++.+ ...+..|......++++.+.+.| ..++.. .-.+.+...+..|+.+.+..++
T Consensus 177 ~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g-------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 239 (285)
T 1wdy_A 177 ACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHG-------------ADVNVRGERGKTPLILAVEKKHLGLVQRLL 239 (285)
T ss_dssp CCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTT-------------CCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred ccCCCCCCHH-HHHHHccccchHHHHHHHHHHcC-------------CCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 1222222333 33345566555567777777777 333322 1223444455567766544443
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.98 E-value=3.8e+02 Score=28.11 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 003016 398 VYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGG--HIDDCISIFQHMKDHCEPNIGTVNAMLKV 475 (857)
Q Consensus 398 t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g--~~~~A~~if~~m~~~~~p~~~~~~~li~~ 475 (857)
..+.+|.-|...|+.++|...++++.. .... ..++..++..+.-+.+ ..+....++..+.. .+..+-+.+..+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~-p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~---~glls~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWK---SSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC-TTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH---TTCSCHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccC-Ccch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH---CCCCCHHHHHHH
Confidence 467889999999999999999999865 3322 3455666666666654 34667888888877 233344444444
Q ss_pred HHh
Q 003016 476 YSR 478 (857)
Q Consensus 476 ~~~ 478 (857)
+.+
T Consensus 294 f~~ 296 (358)
T 3eiq_C 294 YER 296 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 268
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.88 E-value=1.4e+02 Score=28.49 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=16.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCC
Q 003016 367 LVRAFWEEGKINEAVAAVRNMEQRGV 392 (857)
Q Consensus 367 Li~~y~k~g~~~~A~~lf~~m~~~~~ 392 (857)
.+...++.|+.+.+..+++.+.+.+.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 44455667777777777766555443
No 269
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.70 E-value=2.1e+02 Score=24.01 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003016 411 RWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGHIDDCISIFQHMKDHCEPNIGTVNAMLKVYSRNDMFSKAKELFE 490 (857)
Q Consensus 411 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~if~~m~~~~~p~~~~~~~li~~~~~~g~~~~A~~lf~ 490 (857)
+.++|..+-+-+.. .+. ...+--.-+..+...|++++|..+.+.+ +.||.+.|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~-~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~---c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLER-LGQ--DEAARLIRISSLANQGRYQEALAFAHGN---PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC---CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC---CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45555555555544 222 2222222234456677777776655443 3477777766643 46677777766666
Q ss_pred HHHHcC
Q 003016 491 ETTRAN 496 (857)
Q Consensus 491 ~M~~~g 496 (857)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666554
No 270
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.59 E-value=1.8e+02 Score=29.94 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc--CHHHHHHHHHHHHhCCCCC
Q 003016 587 FTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI--SRDKLEKLLNALCNCNAAS 652 (857)
Q Consensus 587 ~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g--~~e~~~~l~~~m~~~g~~p 652 (857)
...++.-|...|+.++|.+.++++..-.+.+ ..+...+..+.-+.+ ..+.+-+++..+.+.|+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4567888888899999999999984211221 244455555555543 3567788888888888773
No 271
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.47 E-value=1.7e+02 Score=28.47 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q 003016 331 KGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQRGVVG 394 (857)
Q Consensus 331 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~ 394 (857)
+....+|..|...|+.-....| |-.....+-..|++.+|..+|+.=.+++..|
T Consensus 131 ~~p~~if~~L~~~~IG~~~Alf-----------Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIF-----------YEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5778999999999998887776 7888888899999999999999988888888
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=28.04 E-value=2.7e+02 Score=26.56 Aligned_cols=55 Identities=13% Similarity=-0.077 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 003016 528 HQWEYFEYVYKGMALSGCQLDQT-KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP 582 (857)
Q Consensus 528 g~~~~a~~l~~~m~~~g~~pd~~-t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p 582 (857)
+.......+|..|...|+--... .|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34667777888887777766543 55555566677788888888887777776666
No 273
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=27.93 E-value=3.2e+02 Score=24.18 Aligned_cols=67 Identities=6% Similarity=-0.119 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhccCHHHHHHHHHHHHhC
Q 003016 582 PHPLFFTEMLIQAIVQSN---YEKAVALINAMAYAPFHITERQWTELFESNEDRISRDKLEKLLNALCNC 648 (857)
Q Consensus 582 p~~~~~~~li~~~~~~g~---~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g~~e~~~~l~~~m~~~ 648 (857)
|+..+--.+..++++..+ ..+++.+++.....+-.-....+-.|--++.+.|+.+.|++..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344433334445555432 3345555555443321001122333333555556666666666655533
No 274
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=27.82 E-value=79 Score=30.31 Aligned_cols=55 Identities=9% Similarity=-0.058 Sum_probs=33.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHH
Q 003016 320 VLNACVPSHQWKGVFWVFKQLRKSGLKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAV 384 (857)
Q Consensus 320 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf 384 (857)
.|...+..|+.+.+..+++.+.+.|..++..... ..+.+...+..|+.+-+..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll 66 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL----------RQTPLHLAVITTLPSVVRLLV 66 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCccccc----------CCCHHHHHHHcCCHHHHHHHH
Confidence 4555677899998888888887777665543210 123444555677765444444
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.90 E-value=4.6e+02 Score=26.74 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=41.2
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHcCCC--HHHHHHHHHHHhh
Q 003016 399 YYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMDGGH--IDDCISIFQHMKD 460 (857)
Q Consensus 399 ~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~g~--~~~A~~if~~m~~ 460 (857)
.+.++.-|...|+.++|...++++.. .... ..++..++..+.-+.+. .+....++..+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 56788888889999999999998864 2222 23455566666665433 4567778888776
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=26.81 E-value=5.5e+02 Score=26.57 Aligned_cols=165 Identities=10% Similarity=0.004 Sum_probs=94.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHHhcCCCCCcHHHHHHHHH
Q 003016 365 KVLVRAFWEEGKINEAVAAVRNMEQRGVVGTASVYYELACCLCNNGRWQDAMLV----VEKIKSLRHSKPLEITFTGLII 440 (857)
Q Consensus 365 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~~d~~t~~~lI~~~~~~g~~~~A~~l----~~~m~~~~g~~pd~~t~~~ll~ 440 (857)
.++..-|.+.+++++|.+++..- ...+.++|+..-|-++ ++-..+ .++++|..+...++.
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~-~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQ-AGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHH-HTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 56667788999999999886432 2234555665544433 333333 677788777777777
Q ss_pred HHHcCCCHH-HHHHHHHHHhh-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCC
Q 003016 441 SSMDGGHID-DCISIFQHMKD-----H--CEPNIGTVNAMLKVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKP 512 (857)
Q Consensus 441 a~~~~g~~~-~A~~if~~m~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~p 512 (857)
.+.....-+ .-..+.+.+.+ + -.-|......+-..|.+.+++.+|..-|- . | ..+
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g-------------~~~ 165 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--G-------------TKE 165 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--S-------------CTT
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--c-------------CCc
Confidence 766554321 11223333321 1 22356666777888888888888888773 1 2 223
Q ss_pred CHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003016 513 DEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQTKHAWLLVEASRAGKCHLLEHAFDSLLE 577 (857)
Q Consensus 513 d~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~~~~~~G~~~~A~~~~~~m~~ 577 (857)
...+|..++..+...+... .+|...-.+++ .|.-.+++..|..+|+...+
T Consensus 166 s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 166 SPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 3456666666555443311 11222222233 35667888888887766553
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=25.84 E-value=5.1e+02 Score=25.89 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=9.3
Q ss_pred ccCHHHHHHHHHHHHh
Q 003016 632 RISRDKLEKLLNALCN 647 (857)
Q Consensus 632 ~g~~e~~~~l~~~m~~ 647 (857)
.|+.+.+..+.....+
T Consensus 113 ~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 113 SQDYEQVSELALQIEE 128 (273)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3666666666665543
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.77 E-value=2.5e+02 Score=24.47 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhcc--CHHHHHHHHHHHHhCCCC
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDRI--SRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~g--~~e~~~~l~~~m~~~g~~ 651 (857)
..++.-|...|+.++|.+.++++... ..-...+...+..+.-+.+ ..+.+.+++..+.+.|+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566666666666666666666311 1111233334444444432 235566666666666655
No 279
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.38 E-value=9.1e+02 Score=28.72 Aligned_cols=158 Identities=9% Similarity=-0.060 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Q 003016 318 NAVLNACVPSHQW---KGVFWVFKQLRKSG----LKPSAATYGLAMESYRRCLLKVLVRAFWEEGKINEAVAAVRNMEQR 390 (857)
Q Consensus 318 ~~li~~~~~~g~~---~~A~~l~~~m~~~g----~~pd~~t~~~ll~~~~~~~~~~Li~~y~k~g~~~~A~~lf~~m~~~ 390 (857)
..++...|..|+. +.|.+.|+.....+ +.||... .....-.+.|..++-..+++.....
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--------------~vy~~~~~~g~~~~~~~l~~~~~~~ 755 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--------------TIYCNAIAQGGQDQWDFAWGQLQQA 755 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--------------HHHHHHHHHSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--------------HHHHHHHHhCCHHHHHHHHHHHHcc
Confidence 4466667777754 56777888776532 6677543 2222333557766666667766654
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHH----hhCCCCC
Q 003016 391 GVVGTASVYYELACCLCNNGRWQDAMLVVEKIKSLRHSKPLEITFTGLIISSMD-GGHIDDCISIFQHM----KDHCEPN 465 (857)
Q Consensus 391 ~~~~d~~t~~~lI~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~-~g~~~~A~~if~~m----~~~~~p~ 465 (857)
.. ..--..++.+++...+.....++++.......+++... ..++.+.+. .-..+.|.+.+..= .+....+
T Consensus 756 ~~---~~ek~~ll~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~--~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~ 830 (909)
T 4fke_A 756 QL---VNEADKLRSALACSNEVWLLNRYLGYTLNPDLIRKQDA--TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGG 830 (909)
T ss_dssp CS---HHHHHHHHHHHTTCCCHHHHHHHHHHTTCTTTSCGGGH--HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSC
T ss_pred CC---HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCchhhH--HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 32 22345677888877887777777776654223444322 122333332 22234455554432 2223334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003016 466 IGTVNAMLKVYSRNDMFSKAKELFEETTR 494 (857)
Q Consensus 466 ~~~~~~li~~~~~~g~~~~A~~lf~~M~~ 494 (857)
...+..+|...+..-.-++-++-++...+
T Consensus 831 ~~~~~~~i~~~~~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 831 SFSFSNLIQGVTRRFSSEFELQQLEQFKK 859 (909)
T ss_dssp CCCHHHHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45567788877776555555555555544
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=24.43 E-value=3.8e+02 Score=23.96 Aligned_cols=87 Identities=7% Similarity=-0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHc-CCCCccccCCCCCCCCCCHhHhhhhHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003016 482 FSKAKELFEETTRA-NSSGYTFLSGDGAPLKPDEYTYSSMLEASATA---HQWEYFEYVYKGMALSGCQLDQTKHAWLLV 557 (857)
Q Consensus 482 ~~~A~~lf~~M~~~-g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~---g~~~~a~~l~~~m~~~g~~pd~~t~~~Ll~ 557 (857)
.++-..+=++-... + -.|+..|--....++.+. .+..++..+++.+.+.+-.-.......|-.
T Consensus 19 ~eeL~~lr~qY~~E~~-------------~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAv 85 (144)
T 1y8m_A 19 PQQLEILRQQVVSEGG-------------PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTI 85 (144)
T ss_dssp HHHHHHHHHHHHHTTS-------------TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC
Q 003016 558 EASRAGKCHLLEHAFDSLLEAGEIPH 583 (857)
Q Consensus 558 ~~~~~G~~~~A~~~~~~m~~~gi~p~ 583 (857)
++.+.|++++|.++.+.+.+ +.|+
T Consensus 86 g~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 86 GCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp HHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCC
No 281
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=23.55 E-value=5.6e+02 Score=25.58 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHhh
Q 003016 586 FFTEMLIQAIV--QSNYEKAVALINAMA 611 (857)
Q Consensus 586 ~~~~li~~~~~--~g~~~~A~~l~~~M~ 611 (857)
-...|+.+... .|+.++|..+-.+..
T Consensus 100 w~~~ll~Al~~~~~G~~~~A~~lr~~A~ 127 (273)
T 1zbp_A 100 LTKSLVSFNLSMVSQDYEQVSELALQIE 127 (273)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 33444555444 488888888877764
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.98 E-value=73 Score=29.61 Aligned_cols=17 Identities=0% Similarity=0.016 Sum_probs=10.0
Q ss_pred HHHHcCCHHHHHHHHHH
Q 003016 370 AFWEEGKINEAVAAVRN 386 (857)
Q Consensus 370 ~y~k~g~~~~A~~lf~~ 386 (857)
..+..|+.+....++..
T Consensus 11 ~A~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 11 EAANQRDTKKVKEILQD 27 (201)
T ss_dssp HHHHTTCHHHHHHHHTC
T ss_pred HHHHhccHHHHHHHHHc
Confidence 34556777666666643
No 283
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=22.08 E-value=2.6e+02 Score=25.83 Aligned_cols=61 Identities=8% Similarity=-0.033 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 003016 159 RVLVDRLSEREMTAKNWKFVRIMNQS-GLMFTE-------GQMLKLLKGLGDKGSWRQAMSVLDWVYGL 219 (857)
Q Consensus 159 ~~l~~~l~~~~~~~~A~~l~~~M~~~-g~~p~~-------~t~~~ll~a~~~~g~~~~A~~l~~~~~~~ 219 (857)
..-++.+...+.++.|.-+..-+... +..|+. .++..+..++-..|++..|...|..++..
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33446677788888887666654432 122331 24556677777888999998888886443
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.19 E-value=3.1e+02 Score=24.91 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=74.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccccCCCCCCCCCCHhHhhhhHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---
Q 003016 474 KVYSRNDMFSKAKELFEETTRANSSGYTFLSGDGAPLKPDEYTYSSMLEASATAHQWEYFEYVYKGMALSGCQLDQT--- 550 (857)
Q Consensus 474 ~~~~~~g~~~~A~~lf~~M~~~g~~~~~~~~~~~~~~~pd~~t~~~ll~a~~~~g~~~~a~~l~~~m~~~g~~pd~~--- 550 (857)
...+..|+.+....++..-...- -.+|..-++.+..| +..|+.+-+ +.+.+.|..++..
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~-------------~~~~~~g~t~L~~A-~~~~~~~~v----~~Ll~~g~~~~~~~~~ 71 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQV-------------DEVDTEGNTPLNIA-VHNNDIEIA----KALIDRGADINLQNSI 71 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCT-------------TCCCTTSCCHHHHH-HHHTCHHHH----HHHHHTTCCTTCCCTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCC-------------CCCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCCCCCCCC
Confidence 34456777777666664321000 11233334444444 455776544 4455557666532
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 003016 551 KHAWLLVEASRAGKCHLLEHAFDSLLEAGEIP---HPLFFTEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFE 627 (857)
Q Consensus 551 t~~~Ll~~~~~~G~~~~A~~~~~~m~~~gi~p---~~~~~~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~ 627 (857)
-.+. +...+..|..+-+..+++.- +..+ +..-.+ .+...+..|+.+-+..+++.-.......+..-++.|..
T Consensus 72 g~t~-l~~A~~~~~~~~~~~Ll~~~---~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 146 (201)
T 3hra_A 72 SDSP-YLYAGAQGRTEILAYMLKHA---TPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146 (201)
T ss_dssp SCCH-HHHHHHTTCHHHHHHHHHHS---CCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHH
T ss_pred CCCH-HHHHHHcCCHHHHHHHHhcc---CcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHH
Confidence 2222 33345667766655555332 2111 111111 23444567887666666554311112223333444555
Q ss_pred HhhhccCHHHHHHHHHHHHhCCCCCC
Q 003016 628 SNEDRISRDKLEKLLNALCNCNAASS 653 (857)
Q Consensus 628 a~~~~g~~e~~~~l~~~m~~~g~~p~ 653 (857)
++........-.++++.+.+.|..++
T Consensus 147 A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 147 AVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHhccchhhHHHHHHHHHHCCCCCC
Confidence 55433323333566677777776643
No 285
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.24 E-value=3.3e+02 Score=24.50 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHhhhc--cCHHHHHHHHHHHHhCCCC
Q 003016 588 TEMLIQAIVQSNYEKAVALINAMAYAPFHITERQWTELFESNEDR--ISRDKLEKLLNALCNCNAA 651 (857)
Q Consensus 588 ~~li~~~~~~g~~~~A~~l~~~M~~~~~~p~~~~~~~Ll~a~~~~--g~~e~~~~l~~~m~~~g~~ 651 (857)
..+|.-|...|+.++|.+.++++.. +..-...+...+..+.-+. ...+.+..++..+.+.|+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~-p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEV-PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTC-GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3455555555555555555555521 1111122333333343332 2234455555555555544
Done!