BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003017
(857 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
Length = 1042
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 138/515 (26%), Positives = 265/515 (51%), Gaps = 28/515 (5%)
Query: 17 IQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQ 76
IQ +L +Q IL ++ + E ELE K KS+E E+ SK A + +E +I RE+ + +E
Sbjct: 375 IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434
Query: 77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQ 136
L+ +S + EKE D+ + ++ E+EK + A E+ + + L +KE L+ L +E+ Q
Sbjct: 435 DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494
Query: 137 IESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196
+ + ++ QKL+ + E SEL L+ +LK++++ R Q+ +L E + L+ +
Sbjct: 495 SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554
Query: 197 REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256
+ KFE EWE +D KR+E+ KE E I +++ + +K+E A+R+ + ++E+
Sbjct: 555 KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614
Query: 257 IRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 316
+ ++E F M E K + +R L EMQ+ E + N+R+++E ++R
Sbjct: 615 LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674
Query: 317 RTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDI 376
+ FE++++ I LKE+AE E++ ++ E +L+ E+ E+K++RE+ + + ++ +
Sbjct: 675 KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734
Query: 377 DELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDI 436
+EL + +L R + E++ +E+ +N + ++ +QL +
Sbjct: 735 EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSN------- 787
Query: 437 PLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-------RADSGGHMSWL 482
L + E+ +Q V+ + S +SNS G N S SW+
Sbjct: 788 -LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPSSATPFSWI 846
Query: 483 RKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 517
++CT+ IF SP K ++++ E + VP+
Sbjct: 847 KRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875
>sp|Q6ZQQ6|WDR87_HUMAN WD repeat-containing protein 87 OS=Homo sapiens GN=WDR87 PE=1 SV=3
Length = 2873
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 99/176 (56%), Gaps = 20/176 (11%)
Query: 57 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELE 116
L Q+ +++ + EK+ R E+ L KK ++ E +N LA +++ + +RE+ + +EK+L E
Sbjct: 1658 LAQKRKKLAKKWEKVAREEEKLAKKGGKLAEVKNILAQKVEELPQREQNLDWQEKELAQE 1717
Query: 117 KQKLIADKESLQILKVEIDQ-----IESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 171
++L D E L + E++Q +E + E + Q+ K++EEE ++
Sbjct: 1718 LEELEWDMEELSWKEEELNQEEGKLVEEKKKLAEEEEALAWQREKLSEEE--------TK 1769
Query: 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKK 227
L Q ++ELL++E E L Q +EK +E E L KR+++ +++ K+A ++++
Sbjct: 1770 LAQ-------EEELLIQEKEKLAQHKEKMPEEEERLGRKREQLIEKKMKLAQKRER 1818
Score = 33.9 bits (76), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 162/333 (48%), Gaps = 51/333 (15%)
Query: 40 EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV 99
EE + + EEE+ L Q++ +++ +EK+ E+ L +K +++ EK+ LA
Sbjct: 1766 EETKLAQEEEL------LIQEKEKLAQHKEKMPEEEERLGRKREQLIEKKMKLA------ 1813
Query: 100 KEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINE 159
++RE+++ + E EL K K+I + K + Q + AQ++ ++ + + L N+
Sbjct: 1814 QKRERWINSME---ELTKNKMILYQ------KKNLAQEKKNLAQEKEKLAQRKENLLYNK 1864
Query: 160 E----EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN 215
E K +L++++++L + +E L +E E + + +EK + + L + D +
Sbjct: 1865 ERLTHSKKQLVQVKNKLGMFNKILAQVEEKLTQEKETVIKKKEKLAETEKKLVQVEDSLA 1924
Query: 216 KEQEKIADEKKKL--EKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQL 273
K+QEK+A EK KL EK ++RL+ E ++ +E RL +E E L
Sbjct: 1925 KKQEKLAQEKMKLALEKAMVQGKKRLRGELDIAKEEKALNLEMKRLAEEKMRLVEGKETL 1984
Query: 274 VLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEK----RERVLND 329
E + R++ +M Q +E+EL ER + EEK +R+L
Sbjct: 1985 SKGETPETSRQR--------KMTQ----------VEQELFERKLSLEEKILLHEDRILA- 2025
Query: 330 IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNR 362
E+A+G+++ + +R ++ ++ K +R
Sbjct: 2026 -MEESEIAKGKLEFTRGQRIFVQGQRKLAKASR 2057
>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 OS=Homo sapiens GN=AKAP9 PE=1 SV=3
Length = 3911
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 59/105 (56%), Gaps = 14/105 (13%)
Query: 13 LQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIE---EEMRSKISALDQQEFEISHREE 69
L +EI KL D Q++++++K +E L++ E +K IE +E + K L+Q+ E+ + E
Sbjct: 707 LILEISKLKDLQQSLVNSKSEEMTLQINELQKEIEILRQEEKEK-GTLEQEVQELQLKTE 765
Query: 70 KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 114
LE++ +KEKENDL + ++ +K E+K LE
Sbjct: 766 LLEKQ----------MKEKENDLQEKFAQLEAENSILKDEKKTLE 800
>sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1
Length = 2017
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 284 RKMLEEFEMQRMNQEAELLNRRDKMEKELQ---------ERTRTFEEKRERVLNDIAHLK 334
RK L + E +R E +L RDK + +Q +R R+ E R +++AH
Sbjct: 553 RKQLSDSESERRALEEQLQRLRDKTDGAMQAHEDAQREVQRLRSANELLSREKSNLAHSL 612
Query: 335 EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQ 369
+VA+ + +E++ ER++L+ + E++ R++L+E+Q
Sbjct: 613 QVAQQQAEELRQEREKLQAAQEELRRQRDRLEEEQ 647
>sp|A2A870|FBF1_MOUSE Fas-binding factor 1 OS=Mus musculus GN=Fbf1 PE=1 SV=1
Length = 1173
Score = 33.1 bits (74), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 122/249 (48%), Gaps = 39/249 (15%)
Query: 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEK---EWEV-LDEKRDEINKEQEKIADEKKK 227
++QQ E R QE L ++ D++++R + ++ + EV L E+ + +E+ ++A EK K
Sbjct: 814 IRQQDEQLRALQERLGRQQRDMEEERNRLQEVIGKMEVRLSEQSRLLEQERWRVAAEKTK 873
Query: 228 LEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKML 287
E Q + EE+ R + ++I R + E ++ + EQ + K +RR++
Sbjct: 874 AESAQRTLEEQ--------RKIMVQQIAMEREELERAKSALLEEQKSVMNKCGEERRRLA 925
Query: 288 EE----FEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEI-- 341
E F Q++++E M + Q RE + I+ KE AE +
Sbjct: 926 AEWAEYFTQQKLSKERAEREAERAMHADSQ---------REGTI--ISLTKEQAELTVRA 974
Query: 342 -------QEIKSERDQLEKEKHEVKVNREKLQEQQLGMR---KDIDELDILCRRLYGDRE 391
+++ +ER+ LE+E+ E+++ +++L + L ++ ++++ + + + Y + E
Sbjct: 975 CELRAKEEKLLAEREALERERQELRLEKDRLHKASLRLQARAQEVEHMSKVASKKYEEGE 1034
Query: 392 QFKREKERF 400
Q +E ++
Sbjct: 1035 QALQEAQQM 1043
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,796,977
Number of Sequences: 539616
Number of extensions: 13983132
Number of successful extensions: 189923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 6142
Number of HSP's that attempted gapping in prelim test: 96049
Number of HSP's gapped (non-prelim): 42556
length of query: 857
length of database: 191,569,459
effective HSP length: 126
effective length of query: 731
effective length of database: 123,577,843
effective search space: 90335403233
effective search space used: 90335403233
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)