Query 003017
Match_columns 857
No_of_seqs 34 out of 36
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 15:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.0 0.0003 6.5E-09 84.2 55.2 56 175-230 343-398 (880)
2 PRK03918 chromosome segregatio 98.7 0.0022 4.7E-08 76.7 55.5 37 174-210 391-427 (880)
3 TIGR00606 rad50 rad50. This fa 98.6 0.0059 1.3E-07 77.2 50.1 86 168-253 882-967 (1311)
4 TIGR02168 SMC_prok_B chromosom 98.6 0.0057 1.2E-07 73.8 49.2 49 360-408 993-1042(1179)
5 TIGR02169 SMC_prok_A chromosom 98.6 0.0049 1.1E-07 74.8 47.1 21 362-382 464-484 (1164)
6 PF12128 DUF3584: Protein of u 98.5 0.0099 2.2E-07 74.7 52.2 206 161-370 594-809 (1201)
7 PRK02224 chromosome segregatio 98.5 0.0083 1.8E-07 72.1 55.6 68 340-408 573-640 (880)
8 KOG0161 Myosin class II heavy 98.5 0.017 3.7E-07 75.2 54.7 166 243-409 1088-1287(1930)
9 TIGR02169 SMC_prok_A chromosom 98.5 0.011 2.3E-07 72.0 49.7 64 326-389 435-498 (1164)
10 TIGR00606 rad50 rad50. This fa 98.5 0.01 2.2E-07 75.1 48.2 70 320-393 1011-1080(1311)
11 PRK03918 chromosome segregatio 98.5 0.01 2.2E-07 71.1 55.1 30 364-393 670-699 (880)
12 PF07888 CALCOCO1: Calcium bin 98.4 0.012 2.6E-07 68.7 48.2 69 337-408 383-451 (546)
13 TIGR02168 SMC_prok_B chromosom 98.3 0.027 5.9E-07 68.1 49.0 56 353-408 993-1049(1179)
14 PRK01156 chromosome segregatio 98.2 0.043 9.3E-07 66.6 55.1 53 358-410 679-731 (895)
15 COG1196 Smc Chromosome segrega 98.1 0.066 1.4E-06 67.3 46.2 72 325-408 959-1030(1163)
16 KOG0161 Myosin class II heavy 98.0 0.15 3.3E-06 67.0 53.2 206 25-231 896-1126(1930)
17 KOG1029 Endocytic adaptor prot 97.9 0.039 8.5E-07 66.2 34.0 217 29-269 316-566 (1118)
18 PRK01156 chromosome segregatio 97.9 0.13 2.9E-06 62.4 52.8 58 336-393 671-728 (895)
19 PF12128 DUF3584: Protein of u 97.9 0.15 3.2E-06 64.6 41.0 145 163-311 302-450 (1201)
20 COG1196 Smc Chromosome segrega 97.9 0.2 4.4E-06 63.1 47.1 43 15-58 155-199 (1163)
21 PF07888 CALCOCO1: Calcium bin 97.7 0.22 4.7E-06 58.6 41.5 189 163-379 251-450 (546)
22 KOG0018 Structural maintenance 97.4 0.51 1.1E-05 58.8 34.1 107 162-271 288-400 (1141)
23 COG0419 SbcC ATPase involved i 97.3 0.82 1.8E-05 56.3 54.2 64 153-216 382-445 (908)
24 KOG0250 DNA repair protein RAD 97.2 0.66 1.4E-05 58.0 32.8 168 60-234 279-447 (1074)
25 PRK12704 phosphodiesterase; Pr 97.2 0.022 4.7E-07 66.3 19.0 77 40-116 56-136 (520)
26 KOG0250 DNA repair protein RAD 97.1 0.55 1.2E-05 58.7 30.2 181 52-232 278-466 (1074)
27 KOG1029 Endocytic adaptor prot 97.0 1.6 3.4E-05 53.4 33.8 252 122-393 317-597 (1118)
28 TIGR03319 YmdA_YtgF conserved 96.9 0.05 1.1E-06 63.3 19.0 75 40-114 50-128 (514)
29 KOG4643 Uncharacterized coiled 96.9 2 4.4E-05 53.7 42.2 97 313-409 453-558 (1195)
30 PF00038 Filament: Intermediat 96.9 0.85 1.8E-05 48.8 38.6 187 123-310 2-202 (312)
31 KOG4674 Uncharacterized conser 96.8 3.5 7.5E-05 54.6 52.5 224 6-229 644-892 (1822)
32 PRK11637 AmiB activator; Provi 96.8 1.2 2.7E-05 50.2 27.8 30 64-93 77-106 (428)
33 PF08317 Spc7: Spc7 kinetochor 96.7 0.57 1.2E-05 51.4 24.0 167 77-249 125-291 (325)
34 PF10174 Cast: RIM-binding pro 96.7 2.7 5.8E-05 51.7 51.4 142 56-197 184-352 (775)
35 PRK00106 hypothetical protein; 96.6 0.076 1.6E-06 62.2 17.8 73 42-114 73-149 (535)
36 PRK11637 AmiB activator; Provi 96.5 2.1 4.6E-05 48.4 29.7 27 273-299 158-184 (428)
37 PRK12704 phosphodiesterase; Pr 96.5 0.18 3.9E-06 58.9 19.2 22 166-187 161-182 (520)
38 PF10174 Cast: RIM-binding pro 96.4 4.1 8.9E-05 50.2 47.3 230 78-311 289-533 (775)
39 PHA02562 46 endonuclease subun 96.4 2.8 6E-05 48.2 31.9 100 133-232 303-402 (562)
40 KOG0018 Structural maintenance 96.3 1.3 2.8E-05 55.5 26.0 213 173-400 651-889 (1141)
41 TIGR03319 YmdA_YtgF conserved 96.3 0.23 5E-06 58.0 19.2 79 32-110 53-131 (514)
42 PF12072 DUF3552: Domain of un 96.3 0.76 1.7E-05 47.3 20.5 70 38-107 61-130 (201)
43 KOG0996 Structural maintenance 96.2 6 0.00013 50.4 31.7 135 129-263 476-612 (1293)
44 PRK00106 hypothetical protein; 96.1 0.39 8.4E-06 56.6 19.2 100 85-190 99-201 (535)
45 KOG0964 Structural maintenance 95.8 8.1 0.00018 48.6 32.7 254 15-269 187-502 (1200)
46 PRK04863 mukB cell division pr 95.8 11 0.00023 49.9 40.1 19 250-268 461-479 (1486)
47 KOG0996 Structural maintenance 95.8 9.1 0.0002 48.9 41.9 224 154-411 385-613 (1293)
48 PF01576 Myosin_tail_1: Myosin 95.7 0.0026 5.7E-08 77.4 0.0 301 26-380 260-566 (859)
49 TIGR03185 DNA_S_dndD DNA sulfu 95.7 6.5 0.00014 47.0 33.6 47 340-386 422-468 (650)
50 KOG0964 Structural maintenance 95.7 9.1 0.0002 48.2 30.5 180 158-352 673-874 (1200)
51 PF10146 zf-C4H2: Zinc finger- 95.6 0.72 1.6E-05 49.1 17.2 110 310-433 4-113 (230)
52 KOG0977 Nuclear envelope prote 95.5 7.7 0.00017 46.2 35.7 319 11-368 38-378 (546)
53 PF13851 GAS: Growth-arrest sp 95.2 4.8 0.0001 41.9 21.8 143 162-321 22-168 (201)
54 PF05701 WEMBL: Weak chloropla 95.1 9.5 0.0002 44.9 45.1 163 83-247 27-192 (522)
55 KOG0612 Rho-associated, coiled 94.9 17 0.00036 46.9 43.8 124 107-237 542-666 (1317)
56 TIGR03185 DNA_S_dndD DNA sulfu 94.9 12 0.00025 44.9 32.2 45 151-195 207-251 (650)
57 PRK12705 hypothetical protein; 94.8 2 4.3E-05 50.6 19.1 60 39-105 61-120 (508)
58 COG1340 Uncharacterized archae 94.3 11 0.00023 42.0 33.2 53 76-128 30-82 (294)
59 PF09731 Mitofilin: Mitochondr 94.1 7.4 0.00016 45.6 21.8 47 397-445 429-475 (582)
60 KOG4674 Uncharacterized conser 93.5 39 0.00084 45.5 49.6 173 24-210 1182-1382(1822)
61 smart00787 Spc7 Spc7 kinetocho 93.2 17 0.00036 40.5 22.4 167 77-249 120-286 (312)
62 KOG4643 Uncharacterized coiled 92.7 38 0.00082 43.3 43.5 69 126-208 279-349 (1195)
63 PF09755 DUF2046: Uncharacteri 92.3 22 0.00049 39.8 26.0 159 172-354 39-200 (310)
64 PF05557 MAD: Mitotic checkpoi 92.3 0.04 8.7E-07 65.9 0.0 70 339-408 357-426 (722)
65 PRK04778 septation ring format 92.2 30 0.00066 41.1 32.8 253 110-408 255-520 (569)
66 PF00038 Filament: Intermediat 91.3 24 0.00051 38.0 37.8 70 301-374 235-304 (312)
67 KOG0612 Rho-associated, coiled 90.9 63 0.0014 42.1 42.2 96 263-365 667-779 (1317)
68 PF05262 Borrelia_P83: Borreli 90.7 14 0.0003 43.6 18.1 92 87-178 189-285 (489)
69 KOG0933 Structural maintenance 90.7 61 0.0013 41.6 42.2 316 77-437 702-1057(1174)
70 KOG0579 Ste20-like serine/thre 90.7 52 0.0011 40.8 40.6 291 16-331 809-1166(1187)
71 PRK12705 hypothetical protein; 90.4 19 0.00042 42.6 19.1 37 84-120 85-121 (508)
72 PF08317 Spc7: Spc7 kinetochor 90.4 33 0.00071 38.0 20.3 35 122-156 206-240 (325)
73 COG1579 Zn-ribbon protein, pos 90.0 32 0.0007 37.3 23.5 90 187-280 95-184 (239)
74 PF09728 Taxilin: Myosin-like 89.7 38 0.00082 37.7 36.2 66 325-390 230-309 (309)
75 PF01576 Myosin_tail_1: Myosin 89.0 0.12 2.6E-06 63.5 0.0 248 111-385 155-402 (859)
76 COG1340 Uncharacterized archae 88.9 44 0.00095 37.4 28.1 23 298-320 133-155 (294)
77 PF13863 DUF4200: Domain of un 88.6 17 0.00036 34.2 13.9 90 46-145 12-101 (126)
78 KOG0962 DNA repair protein RAD 88.0 1E+02 0.0022 40.5 40.6 238 171-412 279-544 (1294)
79 KOG0962 DNA repair protein RAD 87.8 1.1E+02 0.0023 40.5 41.4 98 172-269 824-927 (1294)
80 PF00769 ERM: Ezrin/radixin/mo 87.1 25 0.00055 37.7 15.8 107 125-249 12-118 (246)
81 PRK09039 hypothetical protein; 86.5 62 0.0013 36.4 22.0 49 149-197 119-167 (343)
82 PF11559 ADIP: Afadin- and alp 86.0 36 0.00079 33.3 15.8 72 82-156 75-146 (151)
83 PF12072 DUF3552: Domain of un 85.7 48 0.001 34.4 16.7 58 57-114 73-130 (201)
84 PRK04863 mukB cell division pr 85.5 1.5E+02 0.0032 39.9 43.9 42 341-382 560-601 (1486)
85 KOG0977 Nuclear envelope prote 85.4 94 0.002 37.6 28.5 119 296-419 246-364 (546)
86 KOG0971 Microtubule-associated 85.4 1.2E+02 0.0026 38.8 25.1 189 171-382 235-439 (1243)
87 PF05701 WEMBL: Weak chloropla 85.2 89 0.0019 37.0 50.5 301 83-409 97-407 (522)
88 COG1579 Zn-ribbon protein, pos 84.8 65 0.0014 35.1 22.1 73 15-92 10-82 (239)
89 KOG0804 Cytoplasmic Zn-finger 83.6 42 0.0009 39.6 16.2 109 174-305 347-455 (493)
90 PF06818 Fez1: Fez1; InterPro 83.3 47 0.001 35.4 15.3 46 251-296 144-193 (202)
91 KOG0995 Centromere-associated 82.1 1.3E+02 0.0028 36.6 41.1 26 281-306 456-481 (581)
92 PF04111 APG6: Autophagy prote 81.7 29 0.00064 38.5 13.8 35 161-195 100-134 (314)
93 KOG1103 Predicted coiled-coil 81.1 1.1E+02 0.0025 35.3 18.0 28 76-103 110-138 (561)
94 PF04111 APG6: Autophagy prote 80.2 31 0.00067 38.4 13.4 47 176-222 45-91 (314)
95 PF10473 CENP-F_leu_zip: Leuci 80.1 70 0.0015 32.3 19.0 68 172-239 29-96 (140)
96 PF05622 HOOK: HOOK protein; 78.4 0.67 1.4E-05 55.8 0.0 84 64-148 303-386 (713)
97 PF10146 zf-C4H2: Zinc finger- 78.1 58 0.0013 35.1 14.1 93 158-250 6-104 (230)
98 COG4026 Uncharacterized protei 76.8 32 0.00069 37.4 11.7 83 162-248 118-205 (290)
99 PF07111 HCR: Alpha helical co 75.9 2.2E+02 0.0047 35.6 24.9 126 287-412 124-259 (739)
100 PF07926 TPR_MLP1_2: TPR/MLP1/ 75.5 83 0.0018 30.6 17.5 99 125-226 17-115 (132)
101 PF09787 Golgin_A5: Golgin sub 75.1 1.8E+02 0.0039 34.4 31.5 124 21-145 107-241 (511)
102 KOG0995 Centromere-associated 73.8 2.2E+02 0.0048 34.7 45.6 186 109-310 292-496 (581)
103 PF14988 DUF4515: Domain of un 73.4 1.3E+02 0.0028 31.9 15.9 94 264-357 8-103 (206)
104 PF04871 Uso1_p115_C: Uso1 / p 73.3 1E+02 0.0022 30.6 14.8 36 154-189 78-113 (136)
105 PF05483 SCP-1: Synaptonemal c 73.2 2.5E+02 0.0054 35.1 51.1 176 35-224 382-570 (786)
106 PF05557 MAD: Mitotic checkpoi 73.0 1.1 2.5E-05 53.9 0.0 52 267-319 316-373 (722)
107 KOG2072 Translation initiation 72.1 2.9E+02 0.0062 35.3 38.3 311 78-399 521-860 (988)
108 PF12126 DUF3583: Protein of u 71.9 1.5E+02 0.0033 33.5 15.6 121 130-261 4-124 (324)
109 PF10186 Atg14: UV radiation r 70.7 1.4E+02 0.0031 31.3 18.6 68 40-107 37-108 (302)
110 PTZ00266 NIMA-related protein 70.6 56 0.0012 42.0 13.6 10 399-408 528-537 (1021)
111 PF09789 DUF2353: Uncharacteri 70.3 2E+02 0.0043 32.7 23.1 30 310-339 199-228 (319)
112 PRK00409 recombination and DNA 69.9 1.1E+02 0.0023 38.3 15.5 79 105-192 517-595 (782)
113 KOG0980 Actin-binding protein 68.6 3.5E+02 0.0075 34.8 31.6 72 254-326 475-549 (980)
114 TIGR01069 mutS2 MutS2 family p 67.9 1.3E+02 0.0027 37.7 15.5 75 114-190 514-588 (771)
115 TIGR01069 mutS2 MutS2 family p 67.6 1.4E+02 0.0031 37.2 15.9 50 70-119 505-554 (771)
116 KOG0804 Cytoplasmic Zn-finger 67.1 2.1E+02 0.0045 34.2 16.0 76 70-148 372-447 (493)
117 PF09731 Mitofilin: Mitochondr 67.0 2.7E+02 0.0059 33.0 21.5 37 275-319 365-401 (582)
118 PF00261 Tropomyosin: Tropomyo 67.0 1.8E+02 0.0039 30.9 26.6 171 44-221 18-195 (237)
119 KOG2129 Uncharacterized conser 66.8 2.7E+02 0.006 33.0 21.3 33 27-59 140-172 (552)
120 KOG0976 Rho/Rac1-interacting s 66.2 3.8E+02 0.0082 34.4 48.2 17 15-31 38-54 (1265)
121 KOG0933 Structural maintenance 65.8 4.1E+02 0.009 34.7 40.7 21 474-496 1083-1106(1174)
122 PF15066 CAGE1: Cancer-associa 65.4 3E+02 0.0066 33.0 22.0 39 103-141 389-427 (527)
123 KOG0972 Huntingtin interacting 64.9 1.6E+02 0.0034 33.6 13.9 153 16-174 206-372 (384)
124 KOG0249 LAR-interacting protei 64.9 3E+02 0.0065 34.7 17.2 58 46-103 96-155 (916)
125 PRK10246 exonuclease subunit S 63.5 4.3E+02 0.0094 34.1 40.2 14 403-416 499-512 (1047)
126 COG4942 Membrane-bound metallo 62.7 3.2E+02 0.0069 32.3 29.6 86 115-203 161-246 (420)
127 COG2433 Uncharacterized conser 62.3 80 0.0017 38.6 12.0 65 154-222 430-494 (652)
128 PRK09039 hypothetical protein; 61.6 2.8E+02 0.0061 31.4 22.2 100 91-204 103-203 (343)
129 KOG0579 Ste20-like serine/thre 61.1 4.4E+02 0.0095 33.4 33.1 143 164-317 879-1023(1187)
130 KOG3859 Septins (P-loop GTPase 60.7 96 0.0021 35.2 11.5 53 77-132 349-401 (406)
131 PF07106 TBPIP: Tat binding pr 59.7 1E+02 0.0022 30.9 10.7 17 170-186 119-135 (169)
132 KOG4661 Hsp27-ERE-TATA-binding 59.3 1.5E+02 0.0032 36.3 13.2 20 267-286 681-700 (940)
133 PRK00409 recombination and DNA 58.8 1.8E+02 0.0039 36.4 14.7 79 64-142 504-583 (782)
134 PF03962 Mnd1: Mnd1 family; I 58.8 1.5E+02 0.0033 30.8 12.0 22 127-148 71-92 (188)
135 PF09789 DUF2353: Uncharacteri 58.1 3.3E+02 0.0072 31.1 22.2 39 375-413 190-228 (319)
136 cd07651 F-BAR_PombeCdc15_like 58.0 2.5E+02 0.0054 29.6 18.7 123 99-250 91-217 (236)
137 PF15070 GOLGA2L5: Putative go 57.9 4.4E+02 0.0096 32.5 33.6 51 199-249 206-259 (617)
138 PF05667 DUF812: Protein of un 56.8 4.5E+02 0.0098 32.2 26.6 208 159-389 320-527 (594)
139 KOG3915 Transcription regulato 56.6 81 0.0018 37.5 10.4 30 167-196 507-536 (641)
140 PF11932 DUF3450: Protein of u 56.4 2.8E+02 0.006 29.6 13.9 58 183-240 58-115 (251)
141 PF03962 Mnd1: Mnd1 family; I 55.9 2.6E+02 0.0056 29.2 13.8 37 128-164 65-101 (188)
142 PF09726 Macoilin: Transmembra 55.3 5.1E+02 0.011 32.4 26.7 11 45-55 439-449 (697)
143 PF09744 Jnk-SapK_ap_N: JNK_SA 55.2 2.5E+02 0.0055 28.8 13.2 83 58-140 74-157 (158)
144 PRK15422 septal ring assembly 55.1 88 0.0019 29.1 8.4 55 147-201 12-66 (79)
145 KOG3565 Cdc42-interacting prot 55.0 3.1E+02 0.0067 34.0 15.4 160 4-182 30-190 (640)
146 PF05622 HOOK: HOOK protein; 53.0 4.5 9.8E-05 48.9 0.0 60 171-230 360-419 (713)
147 PTZ00121 MAEBL; Provisional 52.7 7.9E+02 0.017 33.8 33.8 18 394-412 1930-1947(2084)
148 PRK15422 septal ring assembly 52.5 1.9E+02 0.004 27.1 10.0 60 165-228 6-65 (79)
149 TIGR00634 recN DNA repair prot 52.0 4.8E+02 0.011 31.1 20.6 78 184-269 304-381 (563)
150 PF13514 AAA_27: AAA domain 51.6 6.6E+02 0.014 32.6 36.1 95 339-447 896-990 (1111)
151 PF06705 SF-assemblin: SF-asse 51.5 3.3E+02 0.0071 29.0 29.5 198 112-342 20-218 (247)
152 PF15066 CAGE1: Cancer-associa 51.2 5.2E+02 0.011 31.2 26.5 86 158-247 406-491 (527)
153 PF09726 Macoilin: Transmembra 50.3 6.1E+02 0.013 31.8 28.7 50 50-99 430-479 (697)
154 PF10498 IFT57: Intra-flagella 50.0 2.6E+02 0.0056 32.1 13.1 114 39-155 225-340 (359)
155 KOG2129 Uncharacterized conser 49.8 5.2E+02 0.011 30.9 29.9 140 186-325 48-219 (552)
156 KOG0979 Structural maintenance 49.6 7.4E+02 0.016 32.5 26.8 39 361-399 372-410 (1072)
157 TIGR03545 conserved hypothetic 49.3 1.6E+02 0.0035 35.6 11.8 65 86-151 174-238 (555)
158 COG3883 Uncharacterized protei 49.2 4.2E+02 0.0091 29.6 17.0 150 39-198 64-235 (265)
159 PF10186 Atg14: UV radiation r 48.7 3.5E+02 0.0076 28.5 19.5 16 242-257 141-156 (302)
160 COG4942 Membrane-bound metallo 48.1 5.4E+02 0.012 30.5 30.0 62 156-217 136-197 (420)
161 PF04871 Uso1_p115_C: Uso1 / p 47.7 3E+02 0.0065 27.4 14.0 52 104-157 58-109 (136)
162 PF03904 DUF334: Domain of unk 47.3 4.2E+02 0.0092 29.1 16.3 111 174-290 43-154 (230)
163 TIGR01843 type_I_hlyD type I s 47.0 4.3E+02 0.0094 29.1 23.2 50 169-218 125-174 (423)
164 cd07647 F-BAR_PSTPIP The F-BAR 46.6 3.8E+02 0.0083 28.4 18.9 47 243-290 169-215 (239)
165 PRK10869 recombination and rep 46.3 6E+02 0.013 30.6 23.6 70 324-393 302-371 (553)
166 KOG0979 Structural maintenance 46.1 8.3E+02 0.018 32.1 26.0 99 91-196 245-347 (1072)
167 PF12329 TMF_DNA_bd: TATA elem 45.5 2.2E+02 0.0047 25.7 9.3 67 134-210 3-69 (74)
168 COG3074 Uncharacterized protei 44.6 2.6E+02 0.0056 25.9 9.9 65 165-251 6-70 (79)
169 PRK06800 fliH flagellar assemb 44.4 66 0.0014 34.3 6.7 72 320-401 33-104 (228)
170 PRK10884 SH3 domain-containing 43.1 3.4E+02 0.0074 28.9 11.8 18 126-143 147-164 (206)
171 PRK10884 SH3 domain-containing 42.5 3.5E+02 0.0076 28.8 11.8 21 173-193 145-165 (206)
172 KOG0742 AAA+-type ATPase [Post 42.5 7E+02 0.015 30.2 22.7 41 215-255 188-228 (630)
173 PF14662 CCDC155: Coiled-coil 42.4 4.6E+02 0.01 28.1 24.1 172 110-301 17-188 (193)
174 COG4487 Uncharacterized protei 42.4 6.7E+02 0.014 30.0 19.0 75 302-379 113-187 (438)
175 PF05266 DUF724: Protein of un 41.7 3.2E+02 0.0069 28.8 11.3 85 105-189 100-188 (190)
176 PF07926 TPR_MLP1_2: TPR/MLP1/ 41.6 3.4E+02 0.0075 26.4 16.7 28 66-93 21-48 (132)
177 PF13863 DUF4200: Domain of un 41.6 3.1E+02 0.0067 25.8 14.6 36 88-123 12-47 (126)
178 KOG2150 CCR4-NOT transcription 41.3 7.7E+02 0.017 30.4 15.7 125 128-268 4-145 (575)
179 smart00502 BBC B-Box C-termina 41.0 2.8E+02 0.006 25.1 12.7 45 266-310 42-86 (127)
180 PF15254 CCDC14: Coiled-coil d 40.2 7.3E+02 0.016 31.8 15.3 98 193-297 439-536 (861)
181 smart00787 Spc7 Spc7 kinetocho 39.9 6E+02 0.013 28.7 19.3 10 15-24 109-118 (312)
182 PF14992 TMCO5: TMCO5 family 39.9 6E+02 0.013 28.7 13.9 67 32-99 34-100 (280)
183 PF03194 LUC7: LUC7 N_terminus 39.1 1.6E+02 0.0036 32.0 9.0 17 403-419 186-202 (254)
184 PF05529 Bap31: B-cell recepto 38.6 2E+02 0.0044 29.3 9.2 36 169-204 156-191 (192)
185 PF12777 MT: Microtubule-bindi 38.2 3.9E+02 0.0085 30.0 12.0 88 68-155 14-101 (344)
186 KOG1962 B-cell receptor-associ 37.6 3.8E+02 0.0082 29.1 11.2 19 234-252 193-211 (216)
187 PF11932 DUF3450: Protein of u 37.4 5.4E+02 0.012 27.5 14.9 60 162-221 30-89 (251)
188 KOG3091 Nuclear pore complex, 37.4 6.2E+02 0.013 30.7 13.7 84 10-99 340-423 (508)
189 KOG0946 ER-Golgi vesicle-tethe 37.2 1E+03 0.023 30.7 26.8 89 144-235 790-888 (970)
190 KOG0288 WD40 repeat protein Ti 36.4 8.2E+02 0.018 29.3 15.3 85 177-269 30-114 (459)
191 cd07604 BAR_ASAPs The Bin/Amph 36.3 5.7E+02 0.012 27.4 13.2 53 165-217 75-130 (215)
192 PF15290 Syntaphilin: Golgi-lo 35.7 6.7E+02 0.015 28.5 12.9 95 168-303 73-167 (305)
193 PF12718 Tropomyosin_1: Tropom 35.6 4.7E+02 0.01 26.2 18.5 48 168-215 92-142 (143)
194 KOG0163 Myosin class VI heavy 35.6 8.8E+02 0.019 31.3 14.9 23 25-47 909-931 (1259)
195 KOG0943 Predicted ubiquitin-pr 35.5 42 0.00092 43.8 4.3 17 479-495 1488-1504(3015)
196 KOG0243 Kinesin-like protein [ 34.8 1.2E+03 0.026 30.8 39.9 209 74-303 439-654 (1041)
197 PF10168 Nup88: Nuclear pore c 34.4 1E+03 0.023 29.9 18.4 77 70-149 590-670 (717)
198 TIGR03545 conserved hypothetic 34.2 3E+02 0.0065 33.4 10.9 94 97-201 164-257 (555)
199 COG5570 Uncharacterized small 34.0 1.3E+02 0.0029 26.3 5.8 37 146-182 19-55 (57)
200 cd07605 I-BAR_IMD Inverse (I)- 34.0 6.4E+02 0.014 27.3 13.4 146 247-408 29-195 (223)
201 PTZ00266 NIMA-related protein 33.7 6.2E+02 0.013 33.2 14.0 13 613-625 772-784 (1021)
202 PF00430 ATP-synt_B: ATP synth 33.4 4.1E+02 0.0088 24.8 10.3 88 206-293 27-118 (132)
203 PF12037 DUF3523: Domain of un 33.2 7.5E+02 0.016 27.9 25.5 142 128-282 78-219 (276)
204 PRK04778 septation ring format 33.1 9.4E+02 0.02 29.0 29.8 98 131-232 312-413 (569)
205 PF12474 PKK: Polo kinase kina 33.0 5.3E+02 0.011 26.0 14.9 112 167-291 30-142 (142)
206 PF15070 GOLGA2L5: Putative go 32.4 1.1E+03 0.023 29.4 36.4 86 307-393 206-295 (617)
207 PF13094 CENP-Q: CENP-Q, a CEN 32.4 2.8E+02 0.0061 27.6 8.8 51 104-154 41-91 (160)
208 PRK06800 fliH flagellar assemb 31.4 2.7E+02 0.0059 29.9 8.8 49 358-406 36-84 (228)
209 PF06705 SF-assemblin: SF-asse 31.3 6.7E+02 0.015 26.7 31.8 156 165-340 14-169 (247)
210 PF11068 YlqD: YlqD protein; 31.0 4.4E+02 0.0094 26.4 9.7 70 323-408 18-87 (131)
211 PF10234 Cluap1: Clusterin-ass 30.9 4.7E+02 0.01 29.2 10.9 93 98-193 159-258 (267)
212 PF08614 ATG16: Autophagy prot 30.9 4.7E+02 0.01 27.0 10.4 110 114-232 73-182 (194)
213 PF05149 Flagellar_rod: Parafl 30.8 8.3E+02 0.018 27.6 16.5 106 311-426 38-143 (289)
214 PF06818 Fez1: Fez1; InterPro 30.8 7.1E+02 0.015 26.9 17.6 29 172-203 136-164 (202)
215 PF10267 Tmemb_cc2: Predicted 30.8 9.4E+02 0.02 28.3 14.7 32 165-196 210-241 (395)
216 PF03763 Remorin_C: Remorin, C 30.6 1.8E+02 0.0038 28.3 6.8 52 9-60 23-74 (111)
217 KOG1899 LAR transmembrane tyro 30.2 6.2E+02 0.014 31.7 12.4 119 78-196 134-260 (861)
218 PF14988 DUF4515: Domain of un 30.0 7E+02 0.015 26.5 24.1 168 230-398 7-201 (206)
219 PF14197 Cep57_CLD_2: Centroso 29.9 1.7E+02 0.0036 26.3 6.0 56 363-420 1-56 (69)
220 PF05529 Bap31: B-cell recepto 29.8 3E+02 0.0064 28.2 8.7 16 122-137 158-173 (192)
221 PRK10361 DNA recombination pro 29.6 1.1E+03 0.023 28.5 24.4 26 170-195 168-193 (475)
222 PF00769 ERM: Ezrin/radixin/mo 29.6 7.6E+02 0.016 26.8 17.7 23 173-195 88-110 (246)
223 TIGR02894 DNA_bind_RsfA transc 29.4 3.3E+02 0.0072 28.4 8.8 39 169-207 106-144 (161)
224 KOG4661 Hsp27-ERE-TATA-binding 29.4 7.8E+02 0.017 30.6 12.9 7 268-274 670-676 (940)
225 PF09755 DUF2046: Uncharacteri 29.0 9.3E+02 0.02 27.6 32.2 118 162-285 61-189 (310)
226 KOG0963 Transcription factor/C 28.6 1.2E+03 0.027 29.0 27.0 25 182-206 304-328 (629)
227 KOG2398 Predicted proline-seri 27.5 1.3E+03 0.027 28.7 16.4 130 157-290 55-194 (611)
228 PF09304 Cortex-I_coil: Cortex 27.2 6.2E+02 0.013 25.0 13.2 68 126-196 6-73 (107)
229 KOG0980 Actin-binding protein 27.2 1.5E+03 0.033 29.5 34.6 91 127-217 426-516 (980)
230 PF10168 Nup88: Nuclear pore c 26.9 1.4E+03 0.029 28.9 18.0 68 169-240 634-702 (717)
231 KOG0239 Kinesin (KAR3 subfamil 26.8 1.3E+03 0.029 28.8 16.5 18 481-498 420-437 (670)
232 PF02403 Seryl_tRNA_N: Seryl-t 26.7 4E+02 0.0086 24.7 8.3 29 169-197 38-66 (108)
233 PF15462 Barttin: Bartter synd 26.5 1.4E+02 0.0031 31.9 5.8 131 561-713 78-212 (224)
234 PF02090 SPAM: Salmonella surf 26.0 3E+02 0.0065 28.3 7.7 35 366-400 72-106 (147)
235 KOG0244 Kinesin-like protein [ 25.9 1.5E+03 0.032 29.7 14.9 70 143-212 548-628 (913)
236 PF10473 CENP-F_leu_zip: Leuci 25.5 7.3E+02 0.016 25.2 19.1 23 174-196 73-95 (140)
237 smart00502 BBC B-Box C-termina 25.3 5.1E+02 0.011 23.4 13.1 34 269-302 56-89 (127)
238 PF13166 AAA_13: AAA domain 25.3 1.3E+03 0.028 28.0 25.1 13 479-491 700-712 (712)
239 PRK13428 F0F1 ATP synthase sub 25.1 1.2E+03 0.025 27.5 13.5 89 205-293 28-120 (445)
240 PF09728 Taxilin: Myosin-like 25.1 1E+03 0.022 26.8 31.8 133 176-323 24-162 (309)
241 KOG3433 Protein involved in me 25.0 9E+02 0.019 26.1 12.6 96 127-232 79-178 (203)
242 PF04880 NUDE_C: NUDE protein, 24.7 84 0.0018 32.6 3.8 21 175-195 25-45 (166)
243 PRK05431 seryl-tRNA synthetase 23.7 7.4E+02 0.016 28.9 11.4 32 165-196 33-64 (425)
244 KOG4593 Mitotic checkpoint pro 23.5 1.6E+03 0.035 28.5 49.1 163 35-201 152-319 (716)
245 PF08397 IMD: IRSp53/MIM homol 23.3 8.8E+02 0.019 25.5 18.0 155 245-412 17-188 (219)
246 PF14235 DUF4337: Domain of un 22.7 2.8E+02 0.006 28.4 6.9 40 169-208 68-107 (157)
247 PF04568 IATP: Mitochondrial A 22.4 3.2E+02 0.0069 26.4 6.8 43 312-354 54-98 (100)
248 PRK08476 F0F1 ATP synthase sub 22.1 7.7E+02 0.017 24.3 15.3 14 183-196 43-56 (141)
249 TIGR01000 bacteriocin_acc bact 22.1 1.3E+03 0.027 26.8 22.1 11 173-183 290-300 (457)
250 CHL00118 atpG ATP synthase CF0 22.0 8E+02 0.017 24.5 14.8 18 207-224 51-68 (156)
251 TIGR00634 recN DNA repair prot 21.5 1.4E+03 0.031 27.3 23.6 23 171-193 270-292 (563)
252 PF03904 DUF334: Domain of unk 20.7 1.2E+03 0.025 25.9 14.6 85 182-271 37-121 (230)
253 PF13851 GAS: Growth-arrest sp 20.6 1E+03 0.022 25.1 15.0 13 96-108 29-41 (201)
254 KOG2391 Vacuolar sorting prote 20.4 3E+02 0.0064 31.9 7.1 53 329-381 215-274 (365)
255 PF05546 She9_MDM33: She9 / Md 20.3 1.1E+03 0.024 25.6 14.2 107 174-281 32-149 (207)
256 PF05262 Borrelia_P83: Borreli 20.1 1.6E+03 0.035 27.2 18.2 18 206-223 318-335 (489)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=98.99 E-value=0.0003 Score=84.17 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 003017 175 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 230 (857)
Q Consensus 175 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek 230 (857)
+++.++.+...|..+...|+.+...+..+++.+..+...++.++..+..+.+.+..
T Consensus 343 ~~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~ 398 (880)
T PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666666666666666665555555555533
No 2
>PRK03918 chromosome segregation protein; Provisional
Probab=98.71 E-value=0.0022 Score=76.69 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 003017 174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 210 (857)
Q Consensus 174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 210 (857)
.+|..+..+...|..+...|+.+.......|..|.+.
T Consensus 391 ~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~ 427 (880)
T PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKA 427 (880)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343344444555555555555555555555544
No 3
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=0.0059 Score=77.17 Aligned_cols=86 Identities=12% Similarity=0.159 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 003017 168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 247 (857)
Q Consensus 168 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r 247 (857)
-..+|+.+|+.+..+...+-.+..+++.+.+-...+|+.+-..+.++......-..+-..--.-+...-+.|..--..++
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555554444444333322222111111222233444555555555
Q ss_pred HHHHHH
Q 003017 248 DYVQRE 253 (857)
Q Consensus 248 ~~~kre 253 (857)
+|+...
T Consensus 962 ~y~~~~ 967 (1311)
T TIGR00606 962 NKIQDG 967 (1311)
T ss_pred HHHHcC
Confidence 555543
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.57 E-value=0.0057 Score=73.84 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=25.5
Q ss_pred hhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHH-HHHHHHHHHHHhhc
Q 003017 360 VNREKLQEQQLGMRKDIDELDILCRRLYGDREQFK-REKERFLEFVEKHT 408 (857)
Q Consensus 360 ~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~-~ERe~fl~~vEklK 408 (857)
.....|..|..++...++.|...-.++.+.=.... .-++.|....++.+
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666555554433222 22444555444444
No 5
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.56 E-value=0.0049 Score=74.85 Aligned_cols=21 Identities=10% Similarity=0.290 Sum_probs=8.4
Q ss_pred HhHHHHHHhhhhhcHHHHHHH
Q 003017 362 REKLQEQQLGMRKDIDELDIL 382 (857)
Q Consensus 362 ke~le~q~~em~kdIdeL~~l 382 (857)
...+..+...++..+..|..+
T Consensus 464 ~~~~~~~l~~~~~~l~~l~~~ 484 (1164)
T TIGR02169 464 LSKYEQELYDLKEEYDRVEKE 484 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 6
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.53 E-value=0.0099 Score=74.70 Aligned_cols=206 Identities=16% Similarity=0.273 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 003017 161 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 240 (857)
Q Consensus 161 ER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK 240 (857)
++.+|......|.++|..+..+...+.+..+.+..+.....+.-+.+...-+..+-+++.+......+-.-+.....++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45688989999999999999999999999999999988889988888888888888888887777777777777777888
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 241 KEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFE 320 (857)
Q Consensus 241 ~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FE 320 (857)
..+..-+..+...+..|..+-..| ..|+..|....+..+.....++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~----~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQL----KQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887776655 4555677777777777777777777777777777777777777776666665
Q ss_pred HHH-------HHHHhh--hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHh
Q 003017 321 EKR-------ERVLND--IAH-LKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQL 370 (857)
Q Consensus 321 eek-------~~EL~~--In~-lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~ 370 (857)
.++ ..+|.. |+- .-..++.+++.+..++.+++.-|..|..=+.=++..|.
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~ 809 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWD 809 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 543 334432 111 44556778888888888888888888775555555554
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=98.49 E-value=0.0083 Score=72.12 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 003017 340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 408 (857)
Q Consensus 340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 408 (857)
++..+..+...+..++..+. +...+..+..++..+|++|..-...|+..|+.+..+...+-..|..+.
T Consensus 573 ~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~ 640 (880)
T PRK02224 573 EVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELE 640 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555 455556666677777777777778888888877777777777777764
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.48 E-value=0.017 Score=75.22 Aligned_cols=166 Identities=24% Similarity=0.329 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-------------HHH
Q 003017 243 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRD-------------KME 309 (857)
Q Consensus 243 k~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~E-------------E~E 309 (857)
+.++-.++++.+..|..........++.||... .|+.+.|+|+.++++-.+.+|+.....-.. .|-
T Consensus 1088 e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r-~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~ 1166 (1930)
T KOG0161|consen 1088 EQAEVAQLQKQIKELEARIKELEEELEAERASR-AKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLR 1166 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 445566777788888888888888888888764 578888889998888888888876322221 223
Q ss_pred HHHHHHHHHHHHHHHH--------------HHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 003017 310 KELQERTRTFEEKRER--------------VLN-------DIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 368 (857)
Q Consensus 310 ~~L~EREk~FEeek~~--------------EL~-------~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q 368 (857)
+.|.+-.-.|+..... -+. .+..-+.-+..+..++..+...+...+..+..-++.++.+
T Consensus 1167 ~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~ 1246 (1930)
T KOG0161|consen 1167 RDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQ 1246 (1930)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 3333333333332211 011 1122223334444455555555566666666666666667
Q ss_pred HhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhcc
Q 003017 369 QLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTS 409 (857)
Q Consensus 369 ~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ 409 (857)
.++++-=++++..+...|-.|+-.+..+-..|..+++....
T Consensus 1247 l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~ 1287 (1930)
T KOG0161|consen 1247 LSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEA 1287 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHH
Confidence 77777777777776666666666666776666666665543
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.47 E-value=0.011 Score=72.04 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=31.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 003017 326 VLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD 389 (857)
Q Consensus 326 EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q 389 (857)
++..+.........+++.+..++..+..+...+......+..+...++..+..|...-..|+..
T Consensus 435 ~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555555555554444443344433
No 10
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.47 E-value=0.01 Score=75.12 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017 320 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 393 (857)
Q Consensus 320 Eeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~ 393 (857)
...+..--.||++++ ..+++.++..+...|+.+-.++ ++..+..+..+|..-+..|......|-.+...+
T Consensus 1011 ~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~l 1080 (1311)
T TIGR00606 1011 KIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGY 1080 (1311)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455566665 5566666666666666555443 444555555555555555544443333333333
No 11
>PRK03918 chromosome segregation protein; Provisional
Probab=98.45 E-value=0.01 Score=71.11 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017 364 KLQEQQLGMRKDIDELDILCRRLYGDREQF 393 (857)
Q Consensus 364 ~le~q~~em~kdIdeL~~ls~KLk~QRE~~ 393 (857)
.+..+..++...|+.|...-..|+.+-+.+
T Consensus 670 ~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 12
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.38 E-value=0.012 Score=68.68 Aligned_cols=69 Identities=29% Similarity=0.416 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 003017 337 AEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 408 (857)
Q Consensus 337 a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 408 (857)
++.-+++=..|+.+|+++- ...++-..=|.+|-++.|.+|+.-=+-+++-.|+|..|+-.++..|++|.
T Consensus 383 ~e~~lqEer~E~qkL~~ql---~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le 451 (546)
T PF07888_consen 383 LEEHLQEERMERQKLEKQL---GKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444332 22233333478899999999999889999999999999999999999987
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.27 E-value=0.027 Score=68.15 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=38.6
Q ss_pred HHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh-HHHHHHHHHHHHHHHHhhc
Q 003017 353 KEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD-REQFKREKERFLEFVEKHT 408 (857)
Q Consensus 353 kEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q-RE~~~~ERe~fl~~vEklK 408 (857)
..-..+....+-|......+..-|.+|....+.+-+. .+.|..=.++|-..|..+-
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F~~lf 1049 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQRVF 1049 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666667777777777777777777766644 5778888888877776654
No 14
>PRK01156 chromosome segregation protein; Provisional
Probab=98.17 E-value=0.043 Score=66.57 Aligned_cols=53 Identities=11% Similarity=0.057 Sum_probs=30.7
Q ss_pred HhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccc
Q 003017 358 VKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSC 410 (857)
Q Consensus 358 i~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~c 410 (857)
+......+..+...++.+|..|...-..|+++-+.+..+...+-.+++.++.+
T Consensus 679 ~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~ 731 (895)
T PRK01156 679 IEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI 731 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666666666666665555555555555555555544
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.14 E-value=0.066 Score=67.29 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=39.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Q 003017 325 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFV 404 (857)
Q Consensus 325 ~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~v 404 (857)
..|..+| -.|--+++++.-....|..+++.+...++.|..-+.+|.+-+ ...-.+.|.+=-.+|=.++
T Consensus 959 ~~lg~VN---~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~---------~~~f~~~f~~In~~F~~if 1026 (1163)
T COG1196 959 EALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEK---------RERFKETFDKINENFSEIF 1026 (1163)
T ss_pred HhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Confidence 4455555 345556666766666666666666666666665555544322 2222344555555555555
Q ss_pred Hhhc
Q 003017 405 EKHT 408 (857)
Q Consensus 405 EklK 408 (857)
-.+.
T Consensus 1027 ~~L~ 1030 (1163)
T COG1196 1027 KELF 1030 (1163)
T ss_pred HHhC
Confidence 5554
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.01 E-value=0.15 Score=66.96 Aligned_cols=206 Identities=25% Similarity=0.292 Sum_probs=108.7
Q ss_pred HHHHHhhhhHHHHHHHHHhhhHHHH-HHHHHHHHhhhh--hhhhhhHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHhh
Q 003017 25 RAILDAKQQEFELELEEKRKSIEEE-MRSKISALDQQE--FEISHREEKLERREQALDKKSDRVKE---KENDLAARLKS 98 (857)
Q Consensus 25 ~a~L~~Kk~eFElElE~kRKs~dee-l~~K~~~~e~rE--vei~h~Eekl~kREqaLe~k~~~lke---KEkdl~~K~k~ 98 (857)
...|-.++.+.|.+|......++++ .++...+...++ .++...++.+...|..+.+-...... +=+.|..-+..
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777666665543 222222222222 45555555555555443333222222 22333444444
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHH-------HhHHHHHHHHHHHHHh--------hhhccH
Q 003017 99 VKEREKFVKAEEKKLELEKQKLIADK----ESLQILKVEIDQI-------ESENAQQELQIQEECQ--------KLKINE 159 (857)
Q Consensus 99 LKEkEksLkaeEK~lE~ek~qL~~ek----eel~~lK~elEK~-------~a~~e~q~~qi~ee~e--------~Lkite 159 (857)
+.+.--.|..+.|.++....+|+.+- +.+..++.-+.|+ ...++.+ .++..+.+ .|+++.
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e-~~~r~e~Ek~~rkle~el~~~~ 1054 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLERE-KRIRMELEKAKRKLEGELKDLQ 1054 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 55555666666666666555554432 2222222222222 2222222 22222333 234555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003017 160 EEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL 231 (857)
Q Consensus 160 eER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~ 231 (857)
+.=.++-....+|..++.+...+..-|....+++......|.+.-..|--.-.+|..+++.--..|.++++-
T Consensus 1055 e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~ 1126 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQ 1126 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666777777777777777778888888888888888877777666666666655555555555543
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.039 Score=66.24 Aligned_cols=217 Identities=24% Similarity=0.360 Sum_probs=128.0
Q ss_pred HhhhhHHH---HHHHHHhhhHHHHHHHHHHHHhhhhhhh---hh--hHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHhhH
Q 003017 29 DAKQQEFE---LELEEKRKSIEEEMRSKISALDQQEFEI---SH--REEKLERREQALDKKSDRVKEKENDLA-ARLKSV 99 (857)
Q Consensus 29 ~~Kk~eFE---lElE~kRKs~deel~~K~~~~e~rEvei---~h--~Eekl~kREqaLe~k~~~lkeKEkdl~-~K~k~L 99 (857)
|.||-.|+ +|||.+|+-+++.-+..+..++++|.+= +. +-++=.|++-+|++++++--+.|..-+ .+-|.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665 7889999999888777777777766542 22 334445566677777777766664432 233334
Q ss_pred HHHHHhHHHHHHH--HHHH-------HHHHHhhHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHH
Q 003017 100 KEREKFVKAEEKK--LELE-------KQKLIADKESLQILK---VEIDQIESENAQQELQIQEECQKLKINEEEKSELLR 167 (857)
Q Consensus 100 KEkEksLkaeEK~--lE~e-------k~qL~~ekeel~~lK---~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lr 167 (857)
..+|-.-+-.||. |+-+ .+|...+.+.|-.+| ..|+--+..|..++++|..-.....+-
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~--------- 466 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD--------- 466 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec---------
Confidence 3333333322221 1111 122223333333332 233334444455555554443332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH-------------Hh
Q 003017 168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ-------------HS 234 (857)
Q Consensus 168 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~-------------~~ 234 (857)
-..-|++|+.++-|.+..+.|.+.|+++.. +++.-+.+++-||..|..-+ ++
T Consensus 467 -~tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 467 -ITTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred -cchHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 124589999999999999999999988754 34444555555555554332 56
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017 235 AEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269 (857)
Q Consensus 235 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 269 (857)
+-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67777778888888888888888888777666665
No 18
>PRK01156 chromosome segregation protein; Provisional
Probab=97.90 E-value=0.13 Score=62.44 Aligned_cols=58 Identities=21% Similarity=0.254 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017 336 VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 393 (857)
Q Consensus 336 ~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~ 393 (857)
....++..+..+..++..+...+..+...+..+...+..+|..|..--.++.++...+
T Consensus 671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l 728 (895)
T PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESM 728 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777777777777777666655444554444443
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.89 E-value=0.15 Score=64.63 Aligned_cols=145 Identities=17% Similarity=0.312 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017 163 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEK----EWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER 238 (857)
Q Consensus 163 ~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~----EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er 238 (857)
.++-.+..+|..+++.++.....+..+.+.+.+++..|+. +|...-++..++..++..+..+...|+.-+.+=...
T Consensus 302 ~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 302 DEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888888888888999999999999999985 688888888888888888888888888887777776
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003017 239 LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKE 311 (857)
Q Consensus 239 LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~ 311 (857)
...-+..+...+.+..+.+.-. .+....++.....++...-..+...+.-+...+...+...+..+...
T Consensus 382 y~~~~~~l~~~~~~~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (1201)
T PF12128_consen 382 YNKLKQKLEEAFNRQQERLQAQ----QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSE 450 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667766666666655554 33334444444444444444555555444444444444444444433
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.85 E-value=0.2 Score=63.15 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHH--HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHh
Q 003017 15 VEIQKLLDDQRAI--LDAKQQEFELELEEKRKSIEEEMRSKISALD 58 (857)
Q Consensus 15 ~eIQKLldeh~a~--L~~Kk~eFElElE~kRKs~deel~~K~~~~e 58 (857)
.+...++.+.-=+ +..++.+-+..|+.....++. +...+.+++
T Consensus 155 ~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~-~~~~~~el~ 199 (1163)
T COG1196 155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLER-LEDLLEELE 199 (1163)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4555566666543 345566666666666666554 555544443
No 21
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.68 E-value=0.22 Score=58.59 Aligned_cols=189 Identities=18% Similarity=0.254 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003017 163 SELLRLQSQLKQQIETYRHQQ-------ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSA 235 (857)
Q Consensus 163 ~E~lrLqseLKeEId~~R~Qk-------e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E 235 (857)
.++-.++.+||+.+..+-.+. ..+..|.+.|+.+...-+.--..-..+-.-|.+|+-.+...|...- .|
T Consensus 251 ~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~----ae 326 (546)
T PF07888_consen 251 AELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTM----AE 326 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 344444555554444443333 3455666666665555554445555566666677766666664332 22
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003017 236 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER 315 (857)
Q Consensus 236 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ER 315 (857)
-.+-+.+-..+..+.. .-...|++.++-| .+||..+.+..+..|+.++ .+..+...++..|++.
T Consensus 327 Lh~aRLe~aql~~qLa-----------d~~l~lke~~~q~----~qEk~~l~~~~e~~k~~ie-~L~~el~~~e~~lqEe 390 (546)
T PF07888_consen 327 LHQARLEAAQLKLQLA-----------DASLELKEGRSQW----AQEKQALQHSAEADKDEIE-KLSRELQMLEEHLQEE 390 (546)
T ss_pred HHHhhhhHHHHHHHHH-----------HHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence 2233333333222211 1122344444333 4566677777777766655 3555666667777663
Q ss_pred HHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHH
Q 003017 316 TRTFEEKRERVLNDIAHLKE----VAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 379 (857)
Q Consensus 316 Ek~FEeek~~EL~~In~lkE----~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL 379 (857)
-++ .++-..+|+.-+-... =++++|.+++.-++.+++||+++.. +.-+|..+|..|
T Consensus 391 r~E-~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~-------EkQeL~~yi~~L 450 (546)
T PF07888_consen 391 RME-RQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQE-------EKQELLEYIERL 450 (546)
T ss_pred HHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 222 2244445543222221 1356777777777777777655544 445566666655
No 22
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.39 E-value=0.51 Score=58.85 Aligned_cols=107 Identities=29% Similarity=0.460 Sum_probs=76.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH---HHHHHHHhH
Q 003017 162 KSELLRLQ---SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK---KLEKLQHSA 235 (857)
Q Consensus 162 R~E~lrLq---seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre---~lek~~~~E 235 (857)
|-+|+..- +.++..|........-..+.+..++.+-++|+++|..++-++++..+|.+.+...|- ++..-+..|
T Consensus 288 rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~e 367 (1141)
T KOG0018|consen 288 RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEE 367 (1141)
T ss_pred hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHH
Confidence 55555332 223444455555556667778889999999999999999999999999999887654 566667778
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 003017 236 EERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHE 271 (857)
Q Consensus 236 ~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE 271 (857)
.+|||.+-+..- ..+|+.|.+...+=-++..|+
T Consensus 368 y~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~ 400 (1141)
T KOG0018|consen 368 YERLKEEACKEA---LEELEVLNRNMRSDQDTLDHE 400 (1141)
T ss_pred HHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhH
Confidence 888887765544 677777776665555555443
No 23
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.32 E-value=0.82 Score=56.35 Aligned_cols=64 Identities=30% Similarity=0.410 Sum_probs=50.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHH
Q 003017 153 QKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINK 216 (857)
Q Consensus 153 e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~K 216 (857)
+.+........++..-...+...++.+.++...+.+...++......++..|..++.....+..
T Consensus 382 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (908)
T COG0419 382 ERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLES 445 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666777778888889999999999999999999999999999888877654
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=0.66 Score=58.01 Aligned_cols=168 Identities=18% Similarity=0.295 Sum_probs=115.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 003017 60 QEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES 139 (857)
Q Consensus 60 rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a 139 (857)
.+.+++..++.+.+.+..+..-.+++. .+...+-.-...|..-|+++..-+..-..-.++|..++.++...+-
T Consensus 279 ~~~ql~~~~~~i~~~qek~~~l~~ki~-------~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~r 351 (1074)
T KOG0250|consen 279 VERQLNNQEEEIKKKQEKVDTLQEKIE-------EKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRR 351 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 344444445544444444333333333 3333333334444444444555555555667788888888888888
Q ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 003017 140 ENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI-ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQ 218 (857)
Q Consensus 140 ~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEI-d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa 218 (857)
...+-+.+|.+.+.++...+.+...+.+.=..++.+. ..+-.+..++..+.+.|+++.++||-.-..|-++..++..++
T Consensus 352 e~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 352 EVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877777777776 667777788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHh
Q 003017 219 EKIADEKKKLEKLQHS 234 (857)
Q Consensus 219 ~~I~eEre~lek~~~~ 234 (857)
..+-+++..++.-+..
T Consensus 432 ~~~~ee~~~i~~~i~~ 447 (1074)
T KOG0250|consen 432 KEEEEEKEHIEGEILQ 447 (1074)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 8888888777544433
No 25
>PRK12704 phosphodiesterase; Provisional
Probab=97.17 E-value=0.022 Score=66.25 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=46.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Q 003017 40 EEKRKSIEEEMRSKISALDQQ----EFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLEL 115 (857)
Q Consensus 40 E~kRKs~deel~~K~~~~e~r----Evei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ 115 (857)
...+..++.++...+.++++. +.+|..+|..|.+|+..|+.+.+.|..+++.|..+-+.|..+++.|...+++++.
T Consensus 56 ke~~leaeeE~~~~R~Ele~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~ 135 (520)
T PRK12704 56 KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555444 5666666777777777777777777777777777666666666665555544443
Q ss_pred H
Q 003017 116 E 116 (857)
Q Consensus 116 e 116 (857)
.
T Consensus 136 ~ 136 (520)
T PRK12704 136 L 136 (520)
T ss_pred H
Confidence 3
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.08 E-value=0.55 Score=58.71 Aligned_cols=181 Identities=21% Similarity=0.286 Sum_probs=144.3
Q ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhH
Q 003017 52 SKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE-------NDLAARLKSVKEREKFVKAEEKKLELEKQKLIADK 124 (857)
Q Consensus 52 ~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKE-------kdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ek 124 (857)
.+.+++...+-.|.+.++++.+-...++.+.-++.+.. .-+.......+....-+....+.+-.-+.....-+
T Consensus 278 ~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~ 357 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLK 357 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888877777777766655444 44444444445556666667777777777777778
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003017 125 ESLQILKVEIDQIESENAQQELQIQEECQKL-KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 203 (857)
Q Consensus 125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~L-kiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 203 (857)
+++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.|
T Consensus 358 ~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee 437 (1074)
T KOG0250|consen 358 EEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEE 437 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 8888888889999999999999999998888 888888888888888999999999999999999999999999888888
Q ss_pred HhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003017 204 WEVLDEKRDEINKEQEKIADEKKKLEKLQ 232 (857)
Q Consensus 204 WE~LDEKR~el~KEa~~I~eEre~lek~~ 232 (857)
-+.+..+...|.+-...+..+=..|.+.+
T Consensus 438 ~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 438 KEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88898888889888888887666665544
No 27
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=1.6 Score=53.37 Aligned_cols=252 Identities=25% Similarity=0.344 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHh
Q 003017 122 ADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIET----------YRHQQELLLKEHE 191 (857)
Q Consensus 122 ~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~----------~R~Qke~LlkEae 191 (857)
+-++.+.+=.++||+-|-.+++|.++-.++.++++--+.+|-+-.|++.+=|.+++- -|...++--||.+
T Consensus 317 KrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie 396 (1118)
T KOG1029|consen 317 KRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIE 396 (1118)
T ss_pred hhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888889999999999998888888888888888777777766665555442 2333334444444
Q ss_pred HHHHHHHHHHH----HHhhhHHhHHHH----HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH----------HHH
Q 003017 192 DLQQDREKFEK----EWEVLDEKRDEI----NKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV----------QRE 253 (857)
Q Consensus 192 ~Lk~eKekFE~----EWE~LDEKR~el----~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~----------kre 253 (857)
+...-|+-.|+ |||.. +|.++ .+|++.|.-++.+...++ -|.+-|.-....+...+ +.+
T Consensus 397 ~rEaar~ElEkqRqlewEra--r~qem~~Qk~reqe~iv~~nak~~ql~-~eletLn~k~qqls~kl~Dvr~~~tt~kt~ 473 (1118)
T KOG1029|consen 397 RREAAREELEKQRQLEWERA--RRQEMLNQKNREQEWIVYLNAKKKQLQ-QELETLNFKLQQLSGKLQDVRVDITTQKTE 473 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhheeccchHHHH
Confidence 44444444443 67754 33333 456666666665554433 44455554444443322 345
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003017 254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHL 333 (857)
Q Consensus 254 lE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~l 333 (857)
++.+.-.++--|+.|. .+.-+|| |-..+|.-+-..|..|+..+.+.+-.. .++ .-+..+|+..-.-
T Consensus 474 ie~~~~q~e~~isei~----qlqarik-E~q~kl~~l~~Ekq~l~~qlkq~q~a~----~~~-----~~~~s~L~aa~~~ 539 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEID----QLQARIK-ELQEKLQKLAPEKQELNHQLKQKQSAH----KET-----TQRKSELEAARRK 539 (1118)
T ss_pred HHHhhhHHHHHHHHHH----HHHHHHH-HHHHHHHhhhhHHHHHHHHHHHhhhhc----cCc-----chHHHHHHHHHHH
Confidence 5666555554444444 3444443 444555555566666666665433211 000 0112223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhH-hHHHH
Q 003017 334 KEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYG-DREQF 393 (857)
Q Consensus 334 kE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~-QRE~~ 393 (857)
|+++..-|. -.+..|.+|..--..+-+-++.|..+++.|.-.+-...++|.+ -|..+
T Consensus 540 ke~irq~ik---dqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ 597 (1118)
T KOG1029|consen 540 KELIRQAIK---DQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKL 597 (1118)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333222 2233344444433333444556666777776666666655554 44433
No 28
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.92 E-value=0.05 Score=63.26 Aligned_cols=75 Identities=28% Similarity=0.451 Sum_probs=46.2
Q ss_pred HHHhhhHHHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017 40 EEKRKSIEEEMRSKISALDQQ----EFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 114 (857)
Q Consensus 40 E~kRKs~deel~~K~~~~e~r----Evei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE 114 (857)
...+..+++++..++.++++. +.+|..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.|...++++.
T Consensus 50 ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 50 KEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555544 666666677777777777777777777777777766666666666555554443
No 29
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.92 E-value=2 Score=53.68 Aligned_cols=97 Identities=16% Similarity=0.236 Sum_probs=50.1
Q ss_pred HHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh---hhHhHHHHHHhhhhhcHHHHHHHH
Q 003017 313 QERTRTFEEK--RERVLNDIAHLKEVAEGEIQEIKSE----RDQLEKEKHEVK---VNREKLQEQQLGMRKDIDELDILC 383 (857)
Q Consensus 313 ~EREk~FEee--k~~EL~~In~lkE~a~~E~E~v~lE----~~rLekEr~Ei~---~~ke~le~q~~em~kdIdeL~~ls 383 (857)
.-+.+.+... ..-+++..+++-+-...+.++...- ...|..-..++. ..+..+.+|.-.+-...+.|++..
T Consensus 453 ~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~ 532 (1195)
T KOG4643|consen 453 STVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKL 532 (1195)
T ss_pred HHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 4445666666655555544443332 222222222221 233444555555444444444444
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHhhcc
Q 003017 384 RRLYGDREQFKREKERFLEFVEKHTS 409 (857)
Q Consensus 384 ~KLk~QRE~~~~ERe~fl~~vEklK~ 409 (857)
.-|...=-.+-.++.++|.+|..|+.
T Consensus 533 eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 533 EELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44444444566788899999999986
No 30
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.88 E-value=0.85 Score=48.78 Aligned_cols=187 Identities=19% Similarity=0.251 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhhhccH-HHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHH
Q 003017 123 DKESLQILKVEI----DQIESENAQQELQIQEECQKLKINE-EEKS-ELLRLQS---QLKQQIETYRHQQELLLKEHEDL 193 (857)
Q Consensus 123 ekeel~~lK~el----EK~~a~~e~q~~qi~ee~e~Lkite-eER~-E~lrLqs---eLKeEId~~R~Qke~LlkEae~L 193 (857)
+|++|+.|..-+ ++.+ +++.+-..+......+.... ...+ -...++. .|...|+.+-.++--|.-+.+.|
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 455555555443 3333 24444444445555554442 2211 2222333 34477777777777777778888
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---HHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHH-HHHHHHH
Q 003017 194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---LQHSAEERLKKEECAMRDYVQREIEAIRLDKE-AFEATMR 269 (857)
Q Consensus 194 k~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r~~~krelE~L~~ekE-sF~~~M~ 269 (857)
+.+...|..-|+..-..+..++.+...+...-..... .+.+.-..|+.+..-++..|..++..|...-. .+-..|.
T Consensus 81 ~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~ 160 (312)
T PF00038_consen 81 KEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVD 160 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeec
Confidence 8888888888888877777777776666544443332 24566788899999999999999999987663 2222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003017 270 H-EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK 310 (857)
Q Consensus 270 h-Ers~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~ 310 (857)
. -...+..-+..=|+++=..+...+.+++...+.+.+++..
T Consensus 161 ~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~ 202 (312)
T PF00038_consen 161 QFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQ 202 (312)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccc
Confidence 1 1233444444444444444444444444444444444433
No 31
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.79 E-value=3.5 Score=54.55 Aligned_cols=224 Identities=23% Similarity=0.280 Sum_probs=165.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH----------hhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH
Q 003017 6 NFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEK----------RKSIEEEMRSKISALDQQEFEISHREEKLERRE 75 (857)
Q Consensus 6 ~~~i~~rE~~eIQKLldeh~a~L~~Kk~eFElElE~k----------RKs~deel~~K~~~~e~rEvei~h~Eekl~kRE 75 (857)
+|-.|-.|+.++.+++.++-..|..-+...-.+++.. =+.+.+.|....+.++.-+.--.....-|.+-+
T Consensus 644 ~le~~~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 644 ELESYKKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677888888888888887776665555544422 233444444555444433333334445555555
Q ss_pred H---HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-----------
Q 003017 76 Q---ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESEN----------- 141 (857)
Q Consensus 76 q---aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~----------- 141 (857)
+ .+-..+-...+|=.-|++-+..||.--+.|+..++.|-.+...|.+++.+++.+-..++-+...+
T Consensus 724 q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~ 803 (1822)
T KOG4674|consen 724 QTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKC 803 (1822)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 55556667788888899999999999999999999999999999999999988777776554433
Q ss_pred HHHHHHHHHHHhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHH
Q 003017 142 AQQELQIQEECQKLK-INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEK 220 (857)
Q Consensus 142 e~q~~qi~ee~e~Lk-iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~ 220 (857)
+.+...+..+...|+ -++++.+++-.|+..|...+..|+.+...+..+.+.+.++--.-......|--|-.+|.+.++.
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344443433332 3678899999999999999999999999999999999999999999999999999999998877
Q ss_pred HHHHHHHHH
Q 003017 221 IADEKKKLE 229 (857)
Q Consensus 221 I~eEre~le 229 (857)
.--+...+-
T Consensus 884 ~~~~~~~l~ 892 (1822)
T KOG4674|consen 884 AKTQLLNLD 892 (1822)
T ss_pred hHHHHhhcc
Confidence 666555443
No 32
>PRK11637 AmiB activator; Provisional
Probab=96.76 E-value=1.2 Score=50.25 Aligned_cols=30 Identities=10% Similarity=0.351 Sum_probs=10.9
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003017 64 ISHREEKLERREQALDKKSDRVKEKENDLA 93 (857)
Q Consensus 64 i~h~Eekl~kREqaLe~k~~~lkeKEkdl~ 93 (857)
|...+.+|...+..|+.....+...+.++.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~ 106 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQID 106 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.70 E-value=0.57 Score=51.42 Aligned_cols=167 Identities=20% Similarity=0.239 Sum_probs=119.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017 77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 156 (857)
Q Consensus 77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 156 (857)
.+=+...++.-|..=++=+++-+..--..|...-..|......|.+..+.|..+...+....+.+..+...+......
T Consensus 125 ~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-- 202 (325)
T PF08317_consen 125 QLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-- 202 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 344555566666666777777776666666655555555555566555666666666665555555555555544333
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017 157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236 (857)
Q Consensus 157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 236 (857)
+..-+..++. .||++|.....+-+.+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-
T Consensus 203 ~~~~D~~eL~----~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev 278 (325)
T PF08317_consen 203 IESCDQEELE----ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEV 278 (325)
T ss_pred hhhcCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 2333444444 456777777777888888899999999999999999999999999999999999998889999999
Q ss_pred HHhHHHHHHHHHH
Q 003017 237 ERLKKEECAMRDY 249 (857)
Q Consensus 237 erLK~Ek~~~r~~ 249 (857)
.+||.+-+.++..
T Consensus 279 ~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 279 KRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.68 E-value=2.7 Score=51.74 Aligned_cols=142 Identities=18% Similarity=0.252 Sum_probs=84.4
Q ss_pred HHhhhhhhhhhhHHHHHHHHHHHHHh----hhHH---------HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH----
Q 003017 56 ALDQQEFEISHREEKLERREQALDKK----SDRV---------KEKENDLAARLKSVKEREKFVKAEEKKLELEKQ---- 118 (857)
Q Consensus 56 ~~e~rEvei~h~Eekl~kREqaLe~k----~~~l---------keKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~---- 118 (857)
.+.-.|..+.|.+..+..++.+...- ..++ .-.++.|+.|=...+.-|+.|...+-.|..-+.
T Consensus 184 ~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~ 263 (775)
T PF10174_consen 184 RIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGEL 263 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45567788899999999988887322 1111 123444455555555555555544433333222
Q ss_pred ----------HHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 119 ----------KLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLK 188 (857)
Q Consensus 119 ----------qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~Llk 188 (857)
+|...+-...-||..|+.+...+......|..-+-+|..+.+.=++|-.==..||..+-...++...|..
T Consensus 264 ~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqs 343 (775)
T PF10174_consen 264 SEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQS 343 (775)
T ss_pred cccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445566666666666666666666666666666666555544445567777777777788888
Q ss_pred HHhHHHHHH
Q 003017 189 EHEDLQQDR 197 (857)
Q Consensus 189 Eae~Lk~eK 197 (857)
++|.|+..-
T Consensus 344 dve~Lr~rl 352 (775)
T PF10174_consen 344 DVEALRFRL 352 (775)
T ss_pred hHHHHHHHH
Confidence 888777653
No 35
>PRK00106 hypothetical protein; Provisional
Probab=96.65 E-value=0.076 Score=62.24 Aligned_cols=73 Identities=26% Similarity=0.440 Sum_probs=36.9
Q ss_pred HhhhHHHHHHHHHHHHhhh---hh-hhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017 42 KRKSIEEEMRSKISALDQQ---EF-EISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 114 (857)
Q Consensus 42 kRKs~deel~~K~~~~e~r---Ev-ei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE 114 (857)
.+..+++++..++.++++. +. +|..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.|...+++++
T Consensus 73 ~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~ 149 (535)
T PRK00106 73 LLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVE 149 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555543 33 4555555555555555555555555555555555555555444444443333
No 36
>PRK11637 AmiB activator; Provisional
Probab=96.50 E-value=2.1 Score=48.40 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003017 273 LVLSEKAKNDRRKMLEEFEMQRMNQEA 299 (857)
Q Consensus 273 s~~~ek~q~Erad~l~d~EmqkreLE~ 299 (857)
..++..+..-+.+++..|.-.+..|+.
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~~ 184 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELAA 184 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667778888888777776663
No 37
>PRK12704 phosphodiesterase; Provisional
Probab=96.45 E-value=0.18 Score=58.87 Aligned_cols=22 Identities=5% Similarity=0.058 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003017 166 LRLQSQLKQQIETYRHQQELLL 187 (857)
Q Consensus 166 lrLqseLKeEId~~R~Qke~Ll 187 (857)
..+..+++.++..+-.+.+.-.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (520)
T PRK12704 161 EKVEEEARHEAAVLIKEIEEEA 182 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788777544444443
No 38
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.37 E-value=4.1 Score=50.24 Aligned_cols=230 Identities=21% Similarity=0.311 Sum_probs=150.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 003017 78 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 157 (857)
Q Consensus 78 Le~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 157 (857)
++.-.=.|..+.-.|.+...-|.-...........|+.-+..|-+--....+|..|++-++..++....++......+..
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~ 368 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEK 368 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445566666666667777777777777788888888888888899999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH------------HHHHHHHHHH
Q 003017 158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN------------KEQEKIADEK 225 (857)
Q Consensus 158 teeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~------------KEa~~I~eEr 225 (857)
+++|.+-|..==.+|+..+|.+=....-|.+.+|.|...-.. .=-.|++-++.|. -.++.-.-++
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e---kd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~ek 445 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE---KDRQLDEEKERLSSQADSSNEDEALETLEEALREK 445 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 999877665444556666666666666666665555433221 1112222233333 3333444444
Q ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHH
Q 003017 226 KKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMN---QEAELL 302 (857)
Q Consensus 226 e~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~Emqkre---LE~~~~ 302 (857)
+.+..-+...+++.-.++..=-+.|++++..|...-++|...+ ||+..-+.-++.+-+.|.-+.+-++.+ |++.++
T Consensus 446 er~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-sEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lE 524 (775)
T PF10174_consen 446 ERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-SEKELQLEDAKEEASKLASSQEKKDSEIERLEIELE 524 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHH
Confidence 4444444444444444444444677777777777777777665 577777777777777776666555554 446666
Q ss_pred HHHHHHHHH
Q 003017 303 NRRDKMEKE 311 (857)
Q Consensus 303 ~r~EE~E~~ 311 (857)
+.++++++-
T Consensus 525 k~rek~~kl 533 (775)
T PF10174_consen 525 KKREKHEKL 533 (775)
T ss_pred HhhhHHHHH
Confidence 666666543
No 39
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.36 E-value=2.8 Score=48.16 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=74.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHH
Q 003017 133 EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRD 212 (857)
Q Consensus 133 elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~ 212 (857)
.|...++.++.++..+......++....+..++...-.+|...|..+|.....+..+...|+.+.++.+..=..+.++-.
T Consensus 303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 34446666777777777777777777777777777777788888888888888888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003017 213 EINKEQEKIADEKKKLEKLQ 232 (857)
Q Consensus 213 el~KEa~~I~eEre~lek~~ 232 (857)
+|..++..+..++..+.+-.
T Consensus 383 ~l~~~l~~~~~~~~~~~ke~ 402 (562)
T PHA02562 383 KLQDELDKIVKTKSELVKEK 402 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777765544
No 40
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=1.3 Score=55.50 Aligned_cols=213 Identities=20% Similarity=0.219 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Q 003017 173 KQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY--- 249 (857)
Q Consensus 173 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~--- 249 (857)
..+++.++.+++-|+.+..+|.. +.+ |-....-|..-|+..+.+..-+-+.+.+-+ +.+.+|...+.+.
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l----~~~~~El~~~~~~i~~ 722 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSL----EQNELELQRTESEIDE 722 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 46788888888888888888887 555 667777777777777777777766666433 2333444444333
Q ss_pred -------HHHHHHHHhhcHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003017 250 -------VQREIEAIRLDKEAFEATMRHEQLVLSE----------------KAKNDRRKMLEEFEMQRMNQEAELLNRRD 306 (857)
Q Consensus 250 -------~krelE~L~~ekEsF~~~M~hErs~~~e----------------k~q~Erad~l~d~EmqkreLE~~~~~r~E 306 (857)
+++.++.......+..-+|..=-+.+|. ..+++.++=++.|+-|+--|++.|+=-+.
T Consensus 723 ~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~ 802 (1141)
T KOG0018|consen 723 FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ 802 (1141)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec
Confidence 4555666555666666666522222221 12888888899999999999988864433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh
Q 003017 307 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 386 (857)
Q Consensus 307 E~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL 386 (857)
.--..=-+|...+=+.-+.++..+.--.+.+.+++-.+ .+|.. ++ ..-=++.+.+|.+.++...-|+..-.||
T Consensus 803 ~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~----k~~~~~~~~e~~e~~k~~~~~~~~~tkl 875 (1141)
T KOG0018|consen 803 KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN----KSKFEKKEDEINEVKKILRRLVKELTKL 875 (1141)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111223444455555666666666666666666666 44443 22 2223445566666666666666666666
Q ss_pred hHhHHHHHHHHHHH
Q 003017 387 YGDREQFKREKERF 400 (857)
Q Consensus 387 k~QRE~~~~ERe~f 400 (857)
..++-.+-..++++
T Consensus 876 ~~~i~~~es~ie~~ 889 (1141)
T KOG0018|consen 876 DKEITSIESKIERK 889 (1141)
T ss_pred hhhhhhhhhHHHHH
Confidence 55544444444443
No 41
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=96.34 E-value=0.23 Score=57.97 Aligned_cols=79 Identities=28% Similarity=0.449 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 003017 32 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEE 110 (857)
Q Consensus 32 k~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeE 110 (857)
+.+++-|+..+|..++.+++.+...+.++|..|.++|+.|.+|+..|+.+...|..+++.|+.+.+.|.++.+.+....
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~ 131 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666665555555666666666666666666666666666666666666666666655555554433
No 42
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=96.27 E-value=0.76 Score=47.35 Aligned_cols=70 Identities=30% Similarity=0.560 Sum_probs=43.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 003017 38 ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 107 (857)
Q Consensus 38 ElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLk 107 (857)
++...|..++.++..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555778888888888887777766666666666555555555555555555555555555554444443
No 43
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.20 E-value=6 Score=50.45 Aligned_cols=135 Identities=18% Similarity=0.247 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 003017 129 ILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 208 (857)
Q Consensus 129 ~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 208 (857)
.+..++.++..++.....++.+....+.+.++|=.-|+..+..+..-.+.+-.+..-+++..++.+..--....+...+-
T Consensus 476 ~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k 555 (1293)
T KOG0996|consen 476 GIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLK 555 (1293)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 45567777777788888888888888888888888888888877777777777777777777777777777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH--HHHHHHhhcHHH
Q 003017 209 EKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ--REIEAIRLDKEA 263 (857)
Q Consensus 209 EKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k--relE~L~~ekEs 263 (857)
-+..++.|++.....+=..+...++.=+.++-.-+..|...-. +=|.+|.+.+++
T Consensus 556 ~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 556 QELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence 7777777777777666666666655545544444443332221 235666666654
No 44
>PRK00106 hypothetical protein; Provisional
Probab=96.07 E-value=0.39 Score=56.55 Aligned_cols=100 Identities=18% Similarity=0.325 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH
Q 003017 85 VKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE 164 (857)
Q Consensus 85 lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E 164 (857)
|..+|+.|..|...|..++..|...++.|+.....|..-++++...+.+++.+......++.+|. -.|.+|=-+
T Consensus 99 L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a------~lt~~eak~ 172 (535)
T PRK00106 99 LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVA------ALSQAEARE 172 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHH
Confidence 44444444444444444444444444444444444444444455555555544444444444432 123333222
Q ss_pred --HHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 003017 165 --LLRLQSQLKQQIETYRHQ-QELLLKEH 190 (857)
Q Consensus 165 --~lrLqseLKeEId~~R~Q-ke~LlkEa 190 (857)
+-.+..+++.++..+-.+ ..+...+|
T Consensus 173 ~l~~~~~~~~~~~~~~~i~~~e~~a~~~a 201 (535)
T PRK00106 173 IILAETENKLTHEIATRIREAEREVKDRS 201 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566677777655433 33443333
No 45
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=8.1 Score=48.63 Aligned_cols=254 Identities=24% Similarity=0.369 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHH---HHHhhhhHHH--HHHHHHhhhHH-----HHHHHHHHHHhhhhhhhhh---hHHHHHHHHHHHHHh
Q 003017 15 VEIQKLLDDQRA---ILDAKQQEFE--LELEEKRKSIE-----EEMRSKISALDQQEFEISH---REEKLERREQALDKK 81 (857)
Q Consensus 15 ~eIQKLldeh~a---~L~~Kk~eFE--lElE~kRKs~d-----eel~~K~~~~e~rEvei~h---~Eekl~kREqaLe~k 81 (857)
.-|+.||..-+- .|+.-|-|++ -+|+..|++++ .|+..=+..+++-|.+... .-+++.-.-+...-.
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~ 266 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDE 266 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 346666654322 2333344433 25778888875 3444334444444444332 222222222233334
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHH-------HHH-----------HhhHHHHHHHHHHHHHHHhHHHH
Q 003017 82 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEK-------QKL-----------IADKESLQILKVEIDQIESENAQ 143 (857)
Q Consensus 82 ~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek-------~qL-----------~~ekeel~~lK~elEK~~a~~e~ 143 (857)
++.|+..=+.|+.++..|.+--..+++.+-++-..| ..| ..+-+.++.++..|+....++..
T Consensus 267 ~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~ 346 (1200)
T KOG0964|consen 267 SEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSK 346 (1200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677777777775555555543333222 222 23445555555555554444332
Q ss_pred ----------HHHHHHHHHhhhhc----------------cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 144 ----------QELQIQEECQKLKI----------------NEEEKSELLRLQS-QLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 144 ----------q~~qi~ee~e~Lki----------------teeER~E~lrLqs-eLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
+..+...-.-.|+- +++||+.++|-+- +|+.=|...--|..-|.+|.++|+.+
T Consensus 347 I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~ 426 (1200)
T KOG0964|consen 347 IEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESE 426 (1200)
T ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 22111111111211 4577777776553 45666666666666666666666554
Q ss_pred HHHHHHHHh----hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017 197 REKFEKEWE----VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269 (857)
Q Consensus 197 KekFE~EWE----~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 269 (857)
...--.+.. .|++-+.++..=...++..+..+..++ ..+.-|=.|+..++.-+-.=.+.|+....-.++.|-
T Consensus 427 l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~-~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 427 LKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQ-DKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 433222221 122222222222223444444444433 334444445555555555555556666666666665
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.80 E-value=11 Score=49.86 Aligned_cols=19 Identities=11% Similarity=0.351 Sum_probs=8.6
Q ss_pred HHHHHHHHhhcHHHHHHHH
Q 003017 250 VQREIEAIRLDKEAFEATM 268 (857)
Q Consensus 250 ~krelE~L~~ekEsF~~~M 268 (857)
.++++..+....+.|...+
T Consensus 461 lE~kL~~lea~leql~~~~ 479 (1486)
T PRK04863 461 LEQKLSVAQAAHSQFEQAY 479 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.77 E-value=9.1 Score=48.94 Aligned_cols=224 Identities=18% Similarity=0.276 Sum_probs=124.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH 233 (857)
Q Consensus 154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~ 233 (857)
+..-.+.++.++-+--.+.++....|-.....|+|+.+..+..+..|++.-|-.+..-...+.|...+.+..+..++-+.
T Consensus 385 ~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~ 464 (1293)
T KOG0996|consen 385 KFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELD 464 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777788888888888888888888888888888888888888888888888888777777766666665
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHH
Q 003017 234 SAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK---MLEEFEMQRMNQEAELLNRRDKMEK 310 (857)
Q Consensus 234 ~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad---~l~d~EmqkreLE~~~~~r~EE~E~ 310 (857)
...+.|+++=..+++.+ +.....|. -|..++..-|+. .--+|++-. ...+...++.++...
T Consensus 465 e~~~~l~~~t~~~~~e~-----------~~~ekel~----~~~~~~n~~~~e~~vaesel~~L~-~~~~~~~~~~e~lk~ 528 (1293)
T KOG0996|consen 465 EILDSLKQETEGIREEI-----------EKLEKELM----PLLKQVNEARSELDVAESELDILL-SRHETGLKKVEELKG 528 (1293)
T ss_pred HHHHHHhhhhhhhHHHH-----------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 55555555555444444 33333333 233333333322 222233222 233455566666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 003017 311 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR 390 (857)
Q Consensus 311 ~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QR 390 (857)
.|..-.....+.+. .|+.++.. +..++.|+....++-......-..+ --.|..+++++.+-+
T Consensus 529 ~L~~~~~~~~e~~~----~l~~~k~~----l~~~k~e~~~~~k~l~~~~~e~~~~----------~~~~~~~rqrveE~k 590 (1293)
T KOG0996|consen 529 KLLASSESLKEKKT----ELDDLKEE----LPSLKQELKEKEKELPKLRKEERNL----------KSQLNKLRQRVEEAK 590 (1293)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHh----hhhHHHHHHHHHHhHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 66554444444332 23444433 3333444433333322222111111 123444455555555
Q ss_pred HHHHH--HHHHHHHHHHhhcccc
Q 003017 391 EQFKR--EKERFLEFVEKHTSCK 411 (857)
Q Consensus 391 E~~~~--ERe~fl~~vEklK~ck 411 (857)
..+.+ -|...|.++-++|--.
T Consensus 591 s~~~~~~s~~kVl~al~r~kesG 613 (1293)
T KOG0996|consen 591 SSLSSSRSRNKVLDALMRLKESG 613 (1293)
T ss_pred HHHHhhhhhhHHHHHHHHHHHcC
Confidence 44333 3455677777666433
No 48
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.74 E-value=0.0026 Score=77.42 Aligned_cols=301 Identities=23% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH---HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q 003017 26 AILDAKQQEFELELEEKRKSIEEEMRSKISA---LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKER 102 (857)
Q Consensus 26 a~L~~Kk~eFElElE~kRKs~deel~~K~~~---~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEk 102 (857)
..|..+.+..+.+++..|..++++-.+|... +..-..+|..|-.++ +.....+.+.|.+--+.|..++..+.+.
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~---e~e~~~~~EelEeaKKkL~~~L~el~e~ 336 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKY---EEEAEQRTEELEEAKKKLERKLQELQEQ 336 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777776665542 223333333333322 3333444555555566667777777776
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 003017 103 EKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIES---ENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETY 179 (857)
Q Consensus 103 EksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a---~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~ 179 (857)
-..+++.--.|+.-+..|..+-+.+. .+|++..+ .++....+++.....++ .. ...+..+.|.+
T Consensus 337 le~~~~~~~~LeK~k~rL~~EleDl~---~eLe~~~~~~~~LeKKqr~fDk~l~e~k------~~----~~~~~~e~d~~ 403 (859)
T PF01576_consen 337 LEEANAKVSSLEKTKKRLQGELEDLT---SELEKAQAAAAELEKKQRKFDKQLAEWK------AK----VEELQAERDAA 403 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHH------HH----HHHHHHHHHHH
Confidence 66667767777777777776655544 34444443 44454455554332222 11 23455666666
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh
Q 003017 180 RHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRL 259 (857)
Q Consensus 180 R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ 259 (857)
-.....+..++-.|+.+.......|+.|.-....|+.|+..+..+.-...+-++ +-++.+. .+..+++.|..
T Consensus 404 q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr-------~LE~e~~El~~ 475 (859)
T PF01576_consen 404 QREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKR-------RLEQEKEELQE 475 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHH-------HHHHHHHHHHH
Confidence 666677777777777777777777777777677777777766655433333221 1111111 11111111111
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017 260 DKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEG 339 (857)
Q Consensus 260 ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~ 339 (857)
+=+.-. +-+...|..+.-|+..|..-+-++++.|.+|+..|+..|..=...|-+|..-+..
T Consensus 476 ~leE~E-------------------~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~ 536 (859)
T PF01576_consen 476 QLEEAE-------------------DALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEE 536 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHH
Confidence 111111 1222455567778888999999999999999999999876544444444333322
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHH
Q 003017 340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELD 380 (857)
Q Consensus 340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~ 380 (857)
| -+.|.++.-.|++|+.+..+|.--++..+
T Consensus 537 E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 537 E-----------RKERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp -----------------------------------------
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 23344555555566555555544444433
No 49
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.73 E-value=6.5 Score=46.99 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh
Q 003017 340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 386 (857)
Q Consensus 340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL 386 (857)
.+.++..++..++++..++..+...+.++...+++.|+.|...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555443333
No 50
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=9.1 Score=48.23 Aligned_cols=180 Identities=18% Similarity=0.273 Sum_probs=120.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003017 158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 237 (857)
Q Consensus 158 teeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 237 (857)
...=|.+|.-|| +.++.||...+.+-.+++.|..+-++-|..|...--....|..|+..|..|+-.+..-+.-=..
T Consensus 673 ~~~~~~~~~~l~----~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~ 748 (1200)
T KOG0964|consen 673 VNESRSELKELQ----ESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGK 748 (1200)
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHH
Confidence 344556665555 4557799999999999999999999999999999999999999999999999888776543222
Q ss_pred HhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH-------------------HHHH---HHHHHHHHHHHHHHHHhhh
Q 003017 238 RLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQ-------------------LVLS---EKAKNDRRKMLEEFEMQRM 295 (857)
Q Consensus 238 rLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hEr-------------------s~~~---ek~q~Erad~l~d~Emqkr 295 (857)
.| ..++-.+..+......|.+-|-.|= ..+. -.+..+|.++.+=+-..--
T Consensus 749 ~L--------e~i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~ 820 (1200)
T KOG0964|consen 749 EL--------EEIKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEA 820 (1200)
T ss_pred HH--------HHHHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1233334444555555555544322 1111 2245566665555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003017 296 NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLE 352 (857)
Q Consensus 296 eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLe 352 (857)
+|...+..|..+.+. +=...|.-.+..+|+.-++-.+-++..++...+++.-|+
T Consensus 821 ~l~~kL~~r~~~l~~---ei~~~~d~~~~~el~~~~~el~~~~~~~e~~~~el~~l~ 874 (1200)
T KOG0964|consen 821 NLNTKLYKRVNELEQ---EIGDLNDSSRRSELELEKSELESEEKRVEAAILELKTLQ 874 (1200)
T ss_pred HHHHHHHhhhhHHHH---HhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 555666666666633 334566677778888888888888888888888887443
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=95.59 E-value=0.72 Score=49.09 Aligned_cols=110 Identities=17% Similarity=0.282 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 003017 310 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD 389 (857)
Q Consensus 310 ~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q 389 (857)
..|+.+...|+.-+..-++.+.+++... +=|++..-|+..|..|| ...-+++-.|+.||..|.+.=+.++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er-------~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQER-------MAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999888887655 55555555555555554 455678888999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhcCCCCCcccc
Q 003017 390 REQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEAR 433 (857)
Q Consensus 390 RE~~~~ERe~fl~~vEklK~ckncg~~~~efvlsdLql~d~e~~ 433 (857)
|......=.+++..+-.|| .-++++..+-|.|......
T Consensus 76 r~~~~~~i~r~~eey~~Lk------~~in~~R~e~lgl~~Lp~l 113 (230)
T PF10146_consen 76 RNKRQEKIQRLYEEYKPLK------DEINELRKEYLGLEPLPSL 113 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCCCCCCcc
Confidence 8776554444444444433 6666663332654444433
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.49 E-value=7.7 Score=46.23 Aligned_cols=319 Identities=18% Similarity=0.263 Sum_probs=148.4
Q ss_pred hhhhHHHHHHHHHHHHH------HHhhhhHHHHHHHHHhh-----------hHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 003017 11 GLLQVEIQKLLDDQRAI------LDAKQQEFELELEEKRK-----------SIEEEMRSKISALDQQEFEISHREEKLER 73 (857)
Q Consensus 11 ~rE~~eIQKLldeh~a~------L~~Kk~eFElElE~kRK-----------s~deel~~K~~~~e~rEvei~h~Eekl~k 73 (857)
-+|+.+||.|.|---.. |++.-+-++.+|...|- -|+.||-.=+..|+.--.+....|-.+.+
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999998743322 22222223333333222 23344444444444444444444455555
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 003017 74 REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQ 153 (857)
Q Consensus 74 REqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e 153 (857)
-...++.-..++.++++.+..==..++.+...|...+-++..-+...-.=.+++.-||.+...+...|..=+.+++.|.-
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etl 197 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETL 197 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 55555555556666666665555556666666665555555555555555556666777777777777666666665431
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--hhhHHhHHHHHHHHHHHHHHHHHHHHH
Q 003017 154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW--EVLDEKRDEINKEQEKIADEKKKLEKL 231 (857)
Q Consensus 154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW--E~LDEKR~el~KEa~~I~eEre~lek~ 231 (857)
-|.++.---..|+++|+-+..+=.. ++++++.+|..+- +.=++=+.+|..=+..|-.+=++
T Consensus 198 -------lr~d~~n~~q~Lleel~f~~~~h~~------eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~---- 260 (546)
T KOG0977|consen 198 -------LRVDLQNRVQTLLEELAFLKRIHKQ------EIEEERRKARRDTTADNREYFKNELALAIREIRAQYEA---- 260 (546)
T ss_pred -------HHHHHHhHHHHHHHHHHHHHhccHH------HHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHH----
Confidence 1233333333455566555433211 2333344444443 22222233333333333222222
Q ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003017 232 QHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATM--RHE-QLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKM 308 (857)
Q Consensus 232 ~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M--~hE-rs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~ 308 (857)
..+.=+.+++.-|++.+..++..=+.+-..- .+| ...+-..|-.=|+++ .|+|-.- ..+.++.+.+
T Consensus 261 ------~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~kl-selE~~n----~~L~~~I~dL 329 (546)
T KOG0977|consen 261 ------ISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKL-SELESRN----SALEKRIEDL 329 (546)
T ss_pred ------HHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhh-ccccccC----hhHHHHHHHH
Confidence 2223334444444444444442111111111 111 011111111111111 1333332 3456677788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Q 003017 309 EKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQ 368 (857)
Q Consensus 309 E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q 368 (857)
+..|.+=-+.|+..-..-- .+|..|.-|+..|-.|.+.+--.+.-|+-+
T Consensus 330 ~~ql~e~~r~~e~~L~~kd-----------~~i~~mReec~~l~~Elq~LlD~ki~Ld~E 378 (546)
T KOG0977|consen 330 EYQLDEDQRSFEQALNDKD-----------AEIAKMREECQQLSVELQKLLDTKISLDAE 378 (546)
T ss_pred HhhhhhhhhhhhhhhhhHH-----------HHHHHHHHHHHHHHHHHHHhhchHhHHHhH
Confidence 8888888888876533222 334445555555555555444444444433
No 53
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.16 E-value=4.8 Score=41.92 Aligned_cols=143 Identities=20% Similarity=0.366 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 003017 162 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 241 (857)
Q Consensus 162 R~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 241 (857)
+..-+-|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|.... .+|+
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k----~rl~- 96 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK----ARLK- 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-
Confidence 45677888999999999999999999999999999999999999999999999998887766665554432 1121
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHH
Q 003017 242 EECAMRDYVQREIEAIRLDKEAFEA---TMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQ-EAELLNRRDKMEKELQERTR 317 (857)
Q Consensus 242 Ek~~~r~~~krelE~L~~ekEsF~~---~M~hErs~~~ek~q~Erad~l~d~EmqkreL-E~~~~~r~EE~E~~L~EREk 317 (857)
....++..|..+.+.+.. +++.||.+|..+-.. +++|+. ||..| .+-++++...+...|.-|+.
T Consensus 97 -------~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 97 -------ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666665543 444555555544442 222222 23333 23445566666666666665
Q ss_pred HHHH
Q 003017 318 TFEE 321 (857)
Q Consensus 318 ~FEe 321 (857)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.08 E-value=9.5 Score=44.86 Aligned_cols=163 Identities=22% Similarity=0.283 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH
Q 003017 83 DRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK 162 (857)
Q Consensus 83 ~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER 162 (857)
.+...++.+|..=-..|.+-.+.|...+..=-.-...|..-|--+..|+..|++..++-..-.. ..+..++.+.+-+.
T Consensus 27 e~~~~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~--~~e~~k~r~~e~e~ 104 (522)
T PF05701_consen 27 ERVKEKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEE--DSELAKFRAKELEQ 104 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHhHHHHHHHhh
Confidence 3444444444443344444444444443222222222333344455566666665544322111 22233333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-HHhHHHHHH--HHHHHHHHHHHHHHHHHhHHHHh
Q 003017 163 SELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL-DEKRDEINK--EQEKIADEKKKLEKLQHSAEERL 239 (857)
Q Consensus 163 ~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L-DEKR~el~K--Ea~~I~eEre~lek~~~~E~erL 239 (857)
.-...-...+|.+++..|.|-...+.+.+--+++..+...|...+ |+|-.-+.. ++.++++.-..--.-+..|-.+|
T Consensus 105 ~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~l 184 (522)
T PF05701_consen 105 GIAEEASVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIAL 184 (522)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222334999999999999999999999999999999999875 777666654 44555555555445556777777
Q ss_pred HHHHHHHH
Q 003017 240 KKEECAMR 247 (857)
Q Consensus 240 K~Ek~~~r 247 (857)
|...+-..
T Consensus 185 ke~l~~~~ 192 (522)
T PF05701_consen 185 KESLESAK 192 (522)
T ss_pred HHHHHHHH
Confidence 76665543
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.94 E-value=17 Score=46.94 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 107 KAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELL 186 (857)
Q Consensus 107 kaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~L 186 (857)
.+..|+|+.....+..+-+...++..-..-.-..+..++.......+.|...++.-..+..+..+|..+.+.+|.|.-.+
T Consensus 542 ~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~ 621 (1317)
T KOG0612|consen 542 NSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEI 621 (1317)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444333333333333333333333333334444444555667888888888889999999999999999999888
Q ss_pred HHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHH-HHHHHHHhHHH
Q 003017 187 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKK-KLEKLQHSAEE 237 (857)
Q Consensus 187 lkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre-~lek~~~~E~e 237 (857)
..+.-+|+.+- ..|.+.-..++++...+-+.|. +.+.+-.+|.+
T Consensus 622 ~e~~~~l~~~i-------~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~ 666 (1317)
T KOG0612|consen 622 SEIIAELKEEI-------SSLEETLKAGKKELLKVEELKRENQERISDSEKE 666 (1317)
T ss_pred HHHHHHHHhHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777654 4455555556666655555443 34444444443
No 56
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.88 E-value=12 Score=44.89 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=20.3
Q ss_pred HHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017 151 ECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 195 (857)
Q Consensus 151 e~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~ 195 (857)
...++...+.+..++..-...|+++|..+..+...+.+..++|++
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455554444444444444433
No 57
>PRK12705 hypothetical protein; Provisional
Probab=94.77 E-value=2 Score=50.58 Aligned_cols=60 Identities=30% Similarity=0.478 Sum_probs=32.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh
Q 003017 39 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKF 105 (857)
Q Consensus 39 lE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEks 105 (857)
+...|..++.+++.++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444 44566666666666666666655555555544444443
No 58
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=94.30 E-value=11 Score=41.97 Aligned_cols=53 Identities=21% Similarity=0.471 Sum_probs=36.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHH
Q 003017 76 QALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQ 128 (857)
Q Consensus 76 qaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~ 128 (857)
..|..++..+.++-.+|-.|.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein 82 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN 82 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666677777777777777777777777777777776666666666666554
No 59
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=94.06 E-value=7.4 Score=45.65 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhccccchhhhhHHHHhhcCCCCCccccCCCCChHHHHhh
Q 003017 397 KERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERC 445 (857)
Q Consensus 397 Re~fl~~vEklK~ckncg~~~~efvlsdLql~d~e~~~~~~~~~~ad~~ 445 (857)
+.-|...+..|+.|.....++.- +|+-|. +.....-++|...|.++|
T Consensus 429 ~~p~~~el~~l~~~~~~d~~v~~-~l~~l~-~~a~~~Gv~s~~~L~~rf 475 (582)
T PF09731_consen 429 PRPFEDELRALKELAPDDELVDA-ALSSLP-PEAAQRGVPSEAQLRNRF 475 (582)
T ss_pred CCCHHHHHHHHHHhCCCChHHHH-HHHhcC-HHHhhCCCCCHHHHHHHH
Confidence 46788888899988666666655 466665 333344577777788887
No 60
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.49 E-value=39 Score=45.54 Aligned_cols=173 Identities=28% Similarity=0.339 Sum_probs=113.5
Q ss_pred HHHHHHhhhhHHHHHHHHHhhhH---------HHHHHHHHHHHh-hhhh------hhhhhHHHHHHHHHHHHHhhhHHHH
Q 003017 24 QRAILDAKQQEFELELEEKRKSI---------EEEMRSKISALD-QQEF------EISHREEKLERREQALDKKSDRVKE 87 (857)
Q Consensus 24 h~a~L~~Kk~eFElElE~kRKs~---------deel~~K~~~~e-~rEv------ei~h~Eekl~kREqaLe~k~~~lke 87 (857)
+-+.|.....++...|...|.++ +.+|-.++..|. .+|- +..+-.+++ +.|-.+..+|+-
T Consensus 1182 q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~----qEl~~~i~kl~~ 1257 (1822)
T KOG4674|consen 1182 QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKI----QELRDKIEKLNF 1257 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 44566777778888888888887 556666666665 2232 334444444 445555555444
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH-------H-----HhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003017 88 KENDLAARLKSVKEREKFVKAEEKKLELEKQK-------L-----IADKESLQILKVEIDQIESENAQQELQIQEECQKL 155 (857)
Q Consensus 88 KEkdl~~K~k~LKEkEksLkaeEK~lE~ek~q-------L-----~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~L 155 (857)
.=.-|..-++.|+..=....++=+.|+.+... | ..++..+.+|+.+|..+...++.....|.+-.
T Consensus 1258 el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~--- 1334 (1822)
T KOG4674|consen 1258 ELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELK--- 1334 (1822)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 44444444444444444444444444443322 2 23577888888888888888886666665443
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 003017 156 KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 210 (857)
Q Consensus 156 kiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 210 (857)
.++.+||-++|+..|.+-..+..|.++..+|+.-+-+.+.-|.-+-++
T Consensus 1335 -------~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1335 -------KELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788999999999999999999999999999999999877666
No 61
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.21 E-value=17 Score=40.54 Aligned_cols=167 Identities=19% Similarity=0.228 Sum_probs=111.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017 77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 156 (857)
Q Consensus 77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 156 (857)
.|-+...++..|..=++=|++-|+.-...|...-.-|......|.++-+-+..+...|....+.+..+..++.+....+.
T Consensus 120 ~lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~ 199 (312)
T smart00787 120 QLVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELE 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45556667777777777777776666555555554444444555555555555555555544444444444433333322
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017 157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236 (857)
Q Consensus 157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 236 (857)
.- +-.++..|..+|++. =.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-
T Consensus 200 ~~--d~~eL~~lk~~l~~~----~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei 273 (312)
T smart00787 200 DC--DPTELDRAKEKLKKL----LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEI 273 (312)
T ss_pred hC--CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 21 145666655555544 445555667788899999999999999999999999999888888888888888999
Q ss_pred HHhHHHHHHHHHH
Q 003017 237 ERLKKEECAMRDY 249 (857)
Q Consensus 237 erLK~Ek~~~r~~ 249 (857)
.+||..-..++..
T Consensus 274 ~~Lk~~~~~Le~l 286 (312)
T smart00787 274 EKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
No 62
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.70 E-value=38 Score=43.26 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHhHH--HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003017 126 SLQILKVEIDQIESEN--AQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE 203 (857)
Q Consensus 126 el~~lK~elEK~~a~~--e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 203 (857)
+.++|+..|++.++-. ..=..+|.+=+++|--|.. +-+..|+|-++|+.|---|.-+++..-.-
T Consensus 279 ekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~--------------erdtdr~kteeL~eEnstLq~q~eqL~~~ 344 (1195)
T KOG4643|consen 279 EKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRS--------------ERDTDRHKTEELHEENSTLQVQKEQLDGQ 344 (1195)
T ss_pred HHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH--------------hhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456667777766544 1122333333444444433 34566677777777777777777777777
Q ss_pred HhhhH
Q 003017 204 WEVLD 208 (857)
Q Consensus 204 WE~LD 208 (857)
|++|-
T Consensus 345 ~ellq 349 (1195)
T KOG4643|consen 345 MELLQ 349 (1195)
T ss_pred hhHhh
Confidence 77654
No 63
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.35 E-value=22 Score=39.84 Aligned_cols=159 Identities=18% Similarity=0.281 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 003017 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 251 (857)
Q Consensus 172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 251 (857)
||-|++.+|..-.-|..|...|++.=-++-.--|. |=|-|...+..=-+.|+++|..+--.|.
T Consensus 39 Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq-----------------EEE~isN~LlKkl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 39 LKRELETEKARCKHLQEENRALREASVRIQAKAEQ-----------------EEEFISNTLLKKLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666543332211111 1112222222223445555555554454
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Q 003017 252 REIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQER---TRTFEEKRERVLN 328 (857)
Q Consensus 252 relE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ER---Ek~FEeek~~EL~ 328 (857)
++-|.|.-.=-.=.+.+.+|+..+...+..|..-++.-+.-+=..|+.++...+.++++-.+++ |.+.|.+-+
T Consensus 102 ~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE---- 177 (310)
T PF09755_consen 102 QEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE---- 177 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH----
Confidence 4444443222222334444444444444444444444444444445555555555555444433 233333322
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 329 DIAHLKEVAEGEIQEIKSERDQLEKE 354 (857)
Q Consensus 329 ~In~lkE~a~~E~E~v~lE~~rLekE 354 (857)
+|...+-+-|.++..|...|+..
T Consensus 178 ---~lvN~L~Kqm~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 178 ---ALVNRLWKQMDKLEAEKRRLQEK 200 (310)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344556666666666666554
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.26 E-value=0.04 Score=65.88 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhc
Q 003017 339 GEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 408 (857)
Q Consensus 339 ~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK 408 (857)
-++-.+..+...++.....+...+..+..+...++.-+..+..+...|..|+-++.+||+.+-.++..+-
T Consensus 357 ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 357 EKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677888888888888888888999999999999999999999999999999999999998888775
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.22 E-value=30 Score=41.06 Aligned_cols=253 Identities=20% Similarity=0.259 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 110 EKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189 (857)
Q Consensus 110 EK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkE 189 (857)
+++|..-+.+|..-...|..+ +|+...+.+..=..+|+.=-+.|+--..-+...-.....|..-|+.++.+-..|..|
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444 555666666666666776667777667777888888999999999999999999999
Q ss_pred HhHHHHH----------HHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhh
Q 003017 190 HEDLQQD----------REKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRL 259 (857)
Q Consensus 190 ae~Lk~e----------KekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ 259 (857)
.+.|++. ...|+++-+.|...-..+.... +.....++... ..-..+..+++.+.-
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i---~~~~~~ysel~------------e~leel~e~leeie~ 397 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERI---AEQEIAYSELQ------------EELEEILKQLEEIEK 397 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHH------------HHHHHHHHHHHHHHH
Confidence 9999877 4444444444443333332221 11111111111 111122222333333
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017 260 DKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEG 339 (857)
Q Consensus 260 ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~ 339 (857)
++.+|-..+. .=| .-|..+.++...+...|. +-++.-+..++..+=+-.-.
T Consensus 398 eq~ei~e~l~-----------~Lr------------k~E~eAr~kL~~~~~~L~------~ikr~l~k~~lpgip~~y~~ 448 (569)
T PRK04778 398 EQEKLSEMLQ-----------GLR------------KDELEAREKLERYRNKLH------EIKRYLEKSNLPGLPEDYLE 448 (569)
T ss_pred HHHHHHHHHH-----------HHH------------HHHHHHHHHHHHHHHHHH------HHHHHHHHcCCCCCcHHHHH
Confidence 3222222222 111 112222233333333222 22222233334333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH---HHHHHHHHHHHHHhhc
Q 003017 340 EIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ---FKREKERFLEFVEKHT 408 (857)
Q Consensus 340 E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~---~~~ERe~fl~~vEklK 408 (857)
-+..+.-+..+|.++......|=...+.+..+...+++.|..+..-|-+...+ ++..+++|..++....
T Consensus 449 ~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~ 520 (569)
T PRK04778 449 MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVA 520 (569)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHH
Confidence 44445555555555555566666677777777777777777777777766643 4566777766555544
No 66
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.29 E-value=24 Score=37.96 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhh
Q 003017 301 LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 374 (857)
Q Consensus 301 ~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~k 374 (857)
+..+...+|+.+.+-+..|. .++...+........++.++..++.+.-.|-+++---|=.|+-+.+--|+
T Consensus 235 l~~~~~~Le~~l~~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~ 304 (312)
T PF00038_consen 235 LRAKNASLERQLRELEQRLD----EEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRK 304 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34445555555555555444 44555555566667888888889988888888888888888887776655
No 67
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.88 E-value=63 Score=42.11 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhh-------
Q 003017 263 AFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKEL------QERTRTFEEKRERVLND------- 329 (857)
Q Consensus 263 sF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L------~EREk~FEeek~~EL~~------- 329 (857)
...+.++.+..+|+...|++.+---+- +||-. ..+.-+|++.| ++.-...-.+...++..
T Consensus 667 ~~e~~~e~~lk~~q~~~eq~~~E~~~~-~L~~~------e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d~~~ 739 (1317)
T KOG0612|consen 667 ALEIKLERKLKMLQNELEQENAEHHRL-RLQDK------EAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSNDYKQ 739 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhH------HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 566778888888888888887755433 33322 22333344333 22333333444455443
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Q 003017 330 ----IAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKL 365 (857)
Q Consensus 330 ----In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~l 365 (857)
+|.|+-.....+..+.-=-.+|+.|-.--++...-|
T Consensus 740 ~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eL 779 (1317)
T KOG0612|consen 740 SQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSLQREL 779 (1317)
T ss_pred hccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 344444444444444444445555544444433333
No 68
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=90.69 E-value=14 Score=43.62 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH---
Q 003017 87 EKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS--- 163 (857)
Q Consensus 87 eKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~--- 163 (857)
+++++++.+-.-+..+|..-....+..+..+.++....+.+...+.++++-...+..++..+.++++..+-......
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~ 268 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQ 268 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcchhhhhh
Confidence 44455555555555666666666666666677777767777777766666666666666666555555443222111
Q ss_pred --HHHHHHHHHHHHHHH
Q 003017 164 --ELLRLQSQLKQQIET 178 (857)
Q Consensus 164 --E~lrLqseLKeEId~ 178 (857)
+=-+++.+.|+|+++
T Consensus 269 ~~edek~aE~~kkE~EK 285 (489)
T PF05262_consen 269 KKEDEKLAEEEKKEAEK 285 (489)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 223345556666655
No 69
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.66 E-value=61 Score=41.56 Aligned_cols=316 Identities=19% Similarity=0.282 Sum_probs=161.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017 77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 156 (857)
Q Consensus 77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 156 (857)
.|+-.+.++.....+|+.|.-.|.=-++.+...+ .-+++.+ +..++.+++.+...|.+...-+..-.
T Consensus 702 ~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e------~~~~~~~---~~~~~e~v~e~~~~Ike~~~~~k~~~---- 768 (1174)
T KOG0933|consen 702 SLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE------FHKLLDD---LKELLEEVEESEQQIKEKERALKKCE---- 768 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3445566666666677666554433333322211 2222222 22333444444444443333333222
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017 157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236 (857)
Q Consensus 157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 236 (857)
.++..|+..+|.==-.--.....|-||..-+++.-+.|.++|+-=.-=...|+=|.+.+..+....+..+..-+
T Consensus 769 ------~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~ 842 (1174)
T KOG0933|consen 769 ------DKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLE 842 (1174)
T ss_pred ------HHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655433333345567888888888888888888864322222233333333333332222222111
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003017 237 ERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERT 316 (857)
Q Consensus 237 erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~ERE 316 (857)
..+ .-++.++..|... ..+.++++......+.-.++ +++++.-+-..+..++ |..+++.-
T Consensus 843 ~~~--------~~l~~e~~~l~~k----v~~~~~~~~~~~~el~~~k~-k~~~~dt~i~~~~~~~-------e~~~~e~~ 902 (1174)
T KOG0933|consen 843 KQI--------SSLKSELGNLEAK----VDKVEKDVKKAQAELKDQKA-KQRDIDTEISGLLTSQ-------EKCLSEKS 902 (1174)
T ss_pred HHH--------HHHHHHHHHHHHH----HHhHHhHHHHHHHHHHHHHH-HHHhhhHHHhhhhhHH-------HHHHHHhh
Confidence 111 0111222222111 12334445444444444333 3334443333333333 33333322
Q ss_pred H--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHhHHHHHHhhhhhcHH
Q 003017 317 R--TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVK-----------------VNREKLQEQQLGMRKDID 377 (857)
Q Consensus 317 k--~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~-----------------~~ke~le~q~~em~kdId 377 (857)
. .=-.+.+.++..+.+=+..+.++++.+.-+--.|..|++=.. ..-++|+..+..|++.+.
T Consensus 903 ~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn 982 (1174)
T KOG0933|consen 903 DGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVN 982 (1174)
T ss_pred cccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcC
Confidence 1 112345677777888888888999999888888887775432 233456666666666542
Q ss_pred H--HHH------HHHHhhHhHHHHHHHHHHHHHHHHhhc-------------cccchhhhhHHHHhhcCCCCCccccCCC
Q 003017 378 E--LDI------LCRRLYGDREQFKREKERFLEFVEKHT-------------SCKNCGEMMRAFVISNLQLPDDEARNDI 436 (857)
Q Consensus 378 e--L~~------ls~KLk~QRE~~~~ERe~fl~~vEklK-------------~ckncg~~~~efvlsdLql~d~e~~~~~ 436 (857)
- ..+ --..|+..|+-+..|+..|..-|+++- +-++-|.|.+.+ ||+....=.|
T Consensus 983 ~~~m~mle~~E~~~~~lk~k~~~Ie~Dk~kI~ktI~~lDe~k~~~L~kaw~~VN~dFG~IFs~L------LPga~AkL~P 1056 (1174)
T KOG0933|consen 983 PKNMDMLERAEEKEAALKTKKEIIEKDKSKIKKTIEKLDEKKREELNKAWEKVNKDFGSIFSTL------LPGAMAKLEP 1056 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh------CCCccccccC
Confidence 1 122 234688888889999988888887763 446777777776 5776654344
Q ss_pred C
Q 003017 437 P 437 (857)
Q Consensus 437 ~ 437 (857)
|
T Consensus 1057 p 1057 (1174)
T KOG0933|consen 1057 P 1057 (1174)
T ss_pred C
Confidence 4
No 70
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=90.65 E-value=52 Score=40.78 Aligned_cols=291 Identities=23% Similarity=0.325 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHH----HHhhhhhhhhhhHHHHHHHHHHHHHhhhHH-HHHHH
Q 003017 16 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKIS----ALDQQEFEISHREEKLERREQALDKKSDRV-KEKEN 90 (857)
Q Consensus 16 eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~----~~e~rEvei~h~Eekl~kREqaLe~k~~~l-keKEk 90 (857)
--|+|-..+.-.++---+-||.|+-++.+-+|-||++=.+ .+|.-|.+-.|+ |---.+++ -|.|+
T Consensus 809 ~qqqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~r----------lR~eakRir~EQek 878 (1187)
T KOG0579|consen 809 QQQQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHR----------LRNEAKRIRIEQEK 878 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhhhhhHH
Confidence 3456666666667777788999999999999999886433 222223222222 21111122 13334
Q ss_pred HHHH---HHhhHHHHHH-------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhH--------HHHHHH
Q 003017 91 DLAA---RLKSVKEREK-------------FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESE--------NAQQEL 146 (857)
Q Consensus 91 dl~~---K~k~LKEkEk-------------sLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~--------~e~q~~ 146 (857)
|+.. +||.-|...+ +|+.--.+++-+++. ++|+=+.+.+.+++-++-- +..-.+
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql--~ekdFv~kqqq~le~~lkrm~~~~k~ema~iEr 956 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQL--KEKDFVMKQQQNLEAMLKRMAEKHKEEMASIER 956 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4332 2222222222 344433444444443 4455555555555544332 222222
Q ss_pred HHHHHH-hhhhccHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HhhhHHhHHHHH
Q 003017 147 QIQEEC-QKLKINEEEKS---------ELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKE-WEVLDEKRDEIN 215 (857)
Q Consensus 147 qi~ee~-e~LkiteeER~---------E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~E-WE~LDEKR~el~ 215 (857)
+..--+ +=|.+-+.--= -|.-+.-+|| |.|=+|.-.|++-.+.=..|-+++--+ -|.| ||..-+
T Consensus 957 ecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlK---DqYflqRhqlL~rHekE~eQmqrynQr~ie~L--k~rqtq 1031 (1187)
T KOG0579|consen 957 ECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLK---DQYFLQRHQLLARHEKEMEQMQRYNQREIEDL--KRRQTQ 1031 (1187)
T ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 222122 22222222111 1222333444 445555555777666666666665432 2222 222211
Q ss_pred ----------HHHH----------HH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017 216 ----------KEQE----------KI------ADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269 (857)
Q Consensus 216 ----------KEa~----------~I------~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 269 (857)
-|++ +| ++.|+++..|-.-|+.|-|.+..+-.-.+.+++-.|....++=+-..
T Consensus 1032 erarLPKiqRSE~KTRmaMfKkSLrIn~~~s~ae~rekIkqF~~QEekRqk~er~~q~qKhenqmrdl~~qce~ni~EL- 1110 (1187)
T KOG0579|consen 1032 ERARLPKIQRSETKTRMAMFKKSLRINANMSNAEMREKIKQFDEQEEKRQKAEREDQDQKHENQMRDLKEQCEENIIEL- 1110 (1187)
T ss_pred HHhhcchhhhhhhHHHHHHHHHheeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1111 22 57899999999999999999999988888888888888777655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 003017 270 HEQLVLSEKAKNDRRKMLEEFEMQRM-NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIA 331 (857)
Q Consensus 270 hErs~~~ek~q~Erad~l~d~Emqkr-eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In 331 (857)
-.+|+|.-.+|..-|-|+. +|+..-..-++.---.|.-|...+|++-+-+|..|-
T Consensus 1111 -------~qlQNEKchlLvEhEtqklKelde~h~~~~~~w~e~l~~rk~~lee~~~~~~reqE 1166 (1187)
T KOG0579|consen 1111 -------DQLQNEKCHLLVEHETQKLKELDEKHHEMRELWQENLIARKTVLEEKFEDELREQE 1166 (1187)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 3689999999999998874 666666666777778888899888888777766553
No 71
>PRK12705 hypothetical protein; Provisional
Probab=90.41 E-value=19 Score=42.64 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHH
Q 003017 84 RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKL 120 (857)
Q Consensus 84 ~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL 120 (857)
++..+|..|+.|...|..++..|...++.|......|
T Consensus 85 rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~ 121 (508)
T PRK12705 85 RLVQKEEQLDARAEKLDNLENQLEEREKALSARELEL 121 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 72
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.37 E-value=33 Score=38.00 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017 122 ADKESLQILKVEIDQIESENAQQELQIQEECQKLK 156 (857)
Q Consensus 122 ~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 156 (857)
-|+++|..++.+|....+.++..+..+.+-+..|.
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555554444444433
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=89.97 E-value=32 Score=37.32 Aligned_cols=90 Identities=24% Similarity=0.316 Sum_probs=57.0
Q ss_pred HHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 003017 187 LKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEA 266 (857)
Q Consensus 187 lkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~ 266 (857)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33344444444444555555566666666666666666666666666666777666665543 45667788888888
Q ss_pred HHHHHHHHHHHHHH
Q 003017 267 TMRHEQLVLSEKAK 280 (857)
Q Consensus 267 ~M~hErs~~~ek~q 280 (857)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 98877666666654
No 74
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.68 E-value=38 Score=37.69 Aligned_cols=66 Identities=29% Similarity=0.482 Sum_probs=53.8
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------hhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 003017 325 RVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEV--------------KVNREKLQEQQLGMRKDIDELDILCRRLYGDR 390 (857)
Q Consensus 325 ~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei--------------~~~ke~le~q~~em~kdIdeL~~ls~KLk~QR 390 (857)
.-|++=|.+=.....||+.|.--+.+|++|.... ...|..+..+..-+.+-|+.|..|++-|+.+|
T Consensus 230 ~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~er 309 (309)
T PF09728_consen 230 DTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAER 309 (309)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4577788888899999999999999999998754 34677777777778888888888888887776
No 75
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=89.03 E-value=0.12 Score=63.49 Aligned_cols=248 Identities=21% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 111 KKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 190 (857)
Q Consensus 111 K~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEa 190 (857)
..|+.+..-|.++-+.+.+.|.+.++.+-.++.++..+ .-++.-..-.++++...-.+|-.||+.+..+.+.+-.-+
T Consensus 155 ~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El---~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~ 231 (859)
T PF01576_consen 155 SQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNEL---QAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQL 231 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555444444433333 233344444555555556666666666666666655555
Q ss_pred hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 003017 191 EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRH 270 (857)
Q Consensus 191 e~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~h 270 (857)
..|...+..++.. |++=+..|. .-+..|.+|..-+ -.|..+.+.+++++..+.++..--... +.++..
T Consensus 232 ~~l~r~k~~L~~q---Leelk~~le----eEtr~k~~L~~~l----~~le~e~~~L~eqleeE~e~k~~l~~q-lsk~~~ 299 (859)
T PF01576_consen 232 SQLQREKSSLESQ---LEELKRQLE----EETRAKQALEKQL----RQLEHELEQLREQLEEEEEAKSELERQ-LSKLNA 299 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHhhHHHHH----hHhhhhhhhHHHH----HHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHhh
Confidence 5555544444432 222222222 2223333333322 223334444444443333322211111 112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 003017 271 EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQ 350 (857)
Q Consensus 271 Ers~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~r 350 (857)
|=..|-.|+..+-.+.+..+|--|+.|...|..-++.+|.. ......+...+-.+..|++++..++.+
T Consensus 300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~------------~~~~~~LeK~k~rL~~EleDl~~eLe~ 367 (859)
T PF01576_consen 300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEA------------NAKVSSLEKTKKRLQGELEDLTSELEK 367 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444433333333322 122334445555677777777777776
Q ss_pred HHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHH
Q 003017 351 LEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRR 385 (857)
Q Consensus 351 LekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~K 385 (857)
...-...+.....+++.+.++.+.-.+.+......
T Consensus 368 ~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~ 402 (859)
T PF01576_consen 368 AQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDA 402 (859)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665555554444333
No 76
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=88.94 E-value=44 Score=37.41 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 003017 298 EAELLNRRDKMEKELQERTRTFE 320 (857)
Q Consensus 298 E~~~~~r~EE~E~~L~EREk~FE 320 (857)
|..+..+..+++..|..+.++.+
T Consensus 133 E~~lvq~I~~L~k~le~~~k~~e 155 (294)
T COG1340 133 ERELVQKIKELRKELEDAKKALE 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 77
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=88.59 E-value=17 Score=34.24 Aligned_cols=90 Identities=28% Similarity=0.428 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHH
Q 003017 46 IEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKE 125 (857)
Q Consensus 46 ~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~eke 125 (857)
++..|..|+.+...++..+..++..|.++++.|....-++..- |++=+....-..+..+.+......=-.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~f----------lken~~k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKF----------LKENEAKRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888888887766665543 333333333334444444444444455
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 003017 126 SLQILKVEIDQIESENAQQE 145 (857)
Q Consensus 126 el~~lK~elEK~~a~~e~q~ 145 (857)
+|..|..+|..+.+.+..-.
T Consensus 82 ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555544433
No 78
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.96 E-value=1e+02 Score=40.54 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH---hHHHH--------
Q 003017 171 QLKQQIETYRHQQE-LLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH---SAEER-------- 238 (857)
Q Consensus 171 eLKeEId~~R~Qke-~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~---~E~er-------- 238 (857)
.|+.+|..+|.... .....-++|......|+..-...-+++..++++...+.+++..+..... .+.-+
T Consensus 279 ~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~ 358 (1294)
T KOG0962|consen 279 NLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFH 358 (1294)
T ss_pred HHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888 4455567899999999999999999999999999999988776654321 11111
Q ss_pred --hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003017 239 --LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKND-------RRKMLEEFEMQRMNQEAELLNRRDKME 309 (857)
Q Consensus 239 --LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~E-------rad~l~d~EmqkreLE~~~~~r~EE~E 309 (857)
|+...+-+-..+.-...-.....-.||....++=..+....... +..=.+.++.-...+-+.+-++.-+++
T Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~ 438 (1294)
T KOG0962|consen 359 QELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLE 438 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 11111111111111112222333344444443322222222111 111122222222333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHhhhHhHHHHHHhhhhhcHHHHHHHHH
Q 003017 310 KELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLE-KEKH----EVKVNREKLQEQQLGMRKDIDELDILCR 384 (857)
Q Consensus 310 ~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLe-kEr~----Ei~~~ke~le~q~~em~kdIdeL~~ls~ 384 (857)
...+. |.+=+..|+..+.+-.......+..+.-..+++. .++. .=..+...+..-.+..+.-+-.|..+.+
T Consensus 439 ~~~~~----~~~~~~~E~k~l~~~~~~~e~s~~~~~~~~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~k 514 (1294)
T KOG0962|consen 439 AQKRI----KDEIKKLESKGLKDKSFQYEDSTDDLKKLDERLKEAERLLESAEKNNDELALKEKIAEKQNEMAQLEIQKK 514 (1294)
T ss_pred HHHHH----HHHHHHHHHHhHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 32222 2222223444444444444444444444444433 1111 1122344455555666666777778888
Q ss_pred HhhHhHHHHHHHHHH--HHHHHHhhccccc
Q 003017 385 RLYGDREQFKREKER--FLEFVEKHTSCKN 412 (857)
Q Consensus 385 KLk~QRE~~~~ERe~--fl~~vEklK~ckn 412 (857)
+|-.+.+.++....- -+..+.+...|++
T Consensus 515 k~~~~~~~~~~~~~~~~~~~~~~k~~~~k~ 544 (1294)
T KOG0962|consen 515 KLDEELDGLNKDAEKRAKLELLKKKLRKKD 544 (1294)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhHH
Confidence 888888777766543 2344455554544
No 79
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=87.81 E-value=1.1e+02 Score=40.48 Aligned_cols=98 Identities=21% Similarity=0.224 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHH------HHhHHHHhHHHHHH
Q 003017 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKL------QHSAEERLKKEECA 245 (857)
Q Consensus 172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~------~~~E~erLK~Ek~~ 245 (857)
|..|-..+=.-...+-++.+.++.++..|+++--.|-+.+.++..+...|+..=..+..+ +..+-..+..+...
T Consensus 824 ~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e 903 (1294)
T KOG0962|consen 824 LRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKE 903 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 333444444445567788888888888888888877777777776666665543333211 12344566667777
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHH
Q 003017 246 MRDYVQREIEAIRLDKEAFEATMR 269 (857)
Q Consensus 246 ~r~~~krelE~L~~ekEsF~~~M~ 269 (857)
+.+.+......|...-++|..-|.
T Consensus 904 ~~~~~~~~~~~l~e~~s~~e~~k~ 927 (1294)
T KOG0962|consen 904 LLERIQPLKVELEEAQSEKEELKN 927 (1294)
T ss_pred hHhhhcchhhhHHHHHHHHHHHHH
Confidence 777777777777666666655444
No 80
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=87.13 E-value=25 Score=37.72 Aligned_cols=107 Identities=24% Similarity=0.322 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003017 125 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 204 (857)
Q Consensus 125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 204 (857)
+.|..+..+..+....+......|..--+++++.++++..|-..+.+|.+++..++.+..-..+|-..|.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~--------- 82 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ--------- 82 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 34667778888888899999999999999999999999988888888888877777666655555554444
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Q 003017 205 EVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDY 249 (857)
Q Consensus 205 E~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 249 (857)
+..+++-++..+.++++.-+ .|-.+|+.+-..++..
T Consensus 83 -----e~~e~~~~i~~l~ee~~~ke----~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 83 -----ELREAEAEIARLEEESERKE----EEAEELQEELEEARED 118 (246)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44455555555554444322 3444455444444443
No 81
>PRK09039 hypothetical protein; Validated
Probab=86.50 E-value=62 Score=36.44 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=32.1
Q ss_pred HHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003017 149 QEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 197 (857)
Q Consensus 149 ~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK 197 (857)
..-...|..++.+-.+-.+--..|++||+.+|.|...|..+.+.++++-
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566666666666666666778888888888666666666666554
No 82
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.03 E-value=36 Score=33.34 Aligned_cols=72 Identities=32% Similarity=0.439 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 003017 82 SDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK 156 (857)
Q Consensus 82 ~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk 156 (857)
..+|+++-..+..++..+..++..| .+++......+...++++..++.-++..++....+.++...+.++|+
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l---~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQL---QKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 44456667778888999999999999999999999999998888776
No 83
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=85.73 E-value=48 Score=34.43 Aligned_cols=58 Identities=24% Similarity=0.543 Sum_probs=31.2
Q ss_pred HhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017 57 LDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 114 (857)
Q Consensus 57 ~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE 114 (857)
+..+..+|..+|..|.+||..|+.+.+.|..++..|+.+-..|..+...|..-++.++
T Consensus 73 ~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 73 LKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666555555555555555555555444444443333
No 84
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.52 E-value=1.5e+02 Score=39.87 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHH
Q 003017 341 IQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDIL 382 (857)
Q Consensus 341 ~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~l 382 (857)
.++...++.-|..+..++...+-.+..++-++...|..|..+
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~ 601 (1486)
T PRK04863 560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444455555555555555555555555555555443
No 85
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.44 E-value=94 Score=37.56 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhc
Q 003017 296 NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKD 375 (857)
Q Consensus 296 eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kd 375 (857)
+|-+.|+--+.+-|...+-=.+.||.-=.+.+.+|+..-+.++-......-|+.++-..--.+...---|+..-+.+-+-
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~ 325 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKR 325 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHH
Confidence 34444444444444444444444555555556666644444444443333333333222222222222334444555666
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhHH
Q 003017 376 IDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRA 419 (857)
Q Consensus 376 IdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~e 419 (857)
|+.|..|=...+..=++...+++.=|. +++ .-|-.++.+
T Consensus 326 I~dL~~ql~e~~r~~e~~L~~kd~~i~---~mR--eec~~l~~E 364 (546)
T KOG0977|consen 326 IEDLEYQLDEDQRSFEQALNDKDAEIA---KMR--EECQQLSVE 364 (546)
T ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHH---HHH--HHHHHHHHH
Confidence 777766655555555555556654443 333 345555555
No 86
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.36 E-value=1.2e+02 Score=38.77 Aligned_cols=189 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 003017 171 QLKQQIETYRHQQEL---LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 247 (857)
Q Consensus 171 eLKeEId~~R~Qke~---LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r 247 (857)
.|-+.++.+|.++.+ =++|.|+++=+-+..+.=---|-++.+.|++|+.+---+.+-.-.|. +++|.|-.++.
T Consensus 235 dLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~k----e~~k~emad~a 310 (1243)
T KOG0971|consen 235 DLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAK----ERYKEEMADTA 310 (1243)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHH-------HHHHHHHH
Q 003017 248 DYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRM---NQEAELLNRRDKME-------KELQERTR 317 (857)
Q Consensus 248 ~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~Emqkr---eLE~~~~~r~EE~E-------~~L~EREk 317 (857)
|.| |.+.++||=-+.+|+ -+..++|+-+- +|+.+++-=.+||+ ..-----+
T Consensus 311 d~i----EmaTldKEmAEERae---------------sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfk 371 (1243)
T KOG0971|consen 311 DAI----EMATLDKEMAEERAE---------------SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFK 371 (1243)
T ss_pred HHH----HHHHhhHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHH
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHhHHHHHHhhhhhcHHHHHHH
Q 003017 318 TFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV---NREKLQEQQLGMRKDIDELDIL 382 (857)
Q Consensus 318 ~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~---~ke~le~q~~em~kdIdeL~~l 382 (857)
..|+.-.+==+-+=.||++...+-...+-=-+-|++-+.|++. -+++|.++...|-.-|..|..|
T Consensus 372 qlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 372 QLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 87
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.15 E-value=89 Score=37.04 Aligned_cols=301 Identities=22% Similarity=0.244 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH
Q 003017 83 DRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK 162 (857)
Q Consensus 83 ~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER 162 (857)
-++++.+.......... |-.-|.....+...--.-|..=+++|.+++.++......-..=..++..+.-.+++...--
T Consensus 97 ~r~~e~e~~~~~~~~~~--~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kv 174 (522)
T PF05701_consen 97 FRAKELEQGIAEEASVA--WKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKV 174 (522)
T ss_pred HHHHHHhhhhcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666655543333 5555666666666666677777777777777777776666666666666666666554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017 163 SELLRLQSQLKQQIETYRHQQELLLKEHED----LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER 238 (857)
Q Consensus 163 ~E~lrLqseLKeEId~~R~Qke~LlkEae~----Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er 238 (857)
.+|..==..||+.|+..+.=...-.++.-. ..+.+..|+.+-+...++-..|.+++..+..=.-+|.... .+-..
T Consensus 175 e~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~-~~l~~ 253 (522)
T PF05701_consen 175 EELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEAS-AELES 253 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 333333355888888876533332222222 2245555666655555555556665544443333333322 34444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHHH
Q 003017 239 LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQE------AELLNRRDKMEKEL 312 (857)
Q Consensus 239 LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE------~~~~~r~EE~E~~L 312 (857)
|+.|...... ..++... +.-.....++..-..+..+|+--+.+|+ +.|..-.+-+...|
T Consensus 254 Lq~El~~~~~---~~l~~~~------------~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~EL 318 (522)
T PF05701_consen 254 LQAELEAAKE---SKLEEEA------------EAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSEL 318 (522)
T ss_pred HHHHHHHHHH---HHHhhhH------------HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443222222 2222211 0111111111222222222222222221 11222222222222
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHH
Q 003017 313 QERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQ 392 (857)
Q Consensus 313 ~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~ 392 (857)
++.+. ++..+..--..+...+..+..++.++..+-.-+...-.+......+|...+..|..-....+.-.+.
T Consensus 319 -e~~K~-------el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~ 390 (522)
T PF05701_consen 319 -EKEKE-------ELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE 390 (522)
T ss_pred -HHHHH-------HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1111111112333344444444444444444444444445556677777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhcc
Q 003017 393 FKREKERFLEFVEKHTS 409 (857)
Q Consensus 393 ~~~ERe~fl~~vEklK~ 409 (857)
...+-.+....+++.+.
T Consensus 391 ~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 391 AKEEVEKAKEEAEQTKA 407 (522)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777777763
No 88
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=84.78 E-value=65 Score=35.12 Aligned_cols=73 Identities=25% Similarity=0.405 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017 15 VEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 92 (857)
Q Consensus 15 ~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl 92 (857)
..|| -||-...-|..+..++.-.|... ..++.....+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 10 ~~iq-~lD~e~~rl~~~~~~~~~~l~k~----~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQ-KLDLEKDRLEPRIKEIRKALKKA----KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHH-HHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455 45555555555555555555443 3456666677777778888888888777777666555555555544
No 89
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.62 E-value=42 Score=39.59 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 003017 174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253 (857)
Q Consensus 174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 253 (857)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 68899999999999999999999988888888888888888888888877766554 55556677777777777766
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 003017 254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRR 305 (857)
Q Consensus 254 lE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~ 305 (857)
.+.++.+.-+.-.. +.||+-|=++|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~~-------------------I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDEK-------------------ITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHhHheehhhhh
Confidence 66655544443333 3367777666655554443
No 90
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.31 E-value=47 Score=35.39 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HHHHhhhh
Q 003017 251 QREIEAIRLDKEAFEATMRHEQLVLSE---KAKNDRRKMLE-EFEMQRMN 296 (857)
Q Consensus 251 krelE~L~~ekEsF~~~M~hErs~~~e---k~q~Erad~l~-d~Emqkre 296 (857)
+.+|-.++..++.|+...++||..|.+ |+-.=..++.. =++|-+|+
T Consensus 144 ~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn 193 (202)
T PF06818_consen 144 RAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRN 193 (202)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677888999999999999974 44444444444 34555543
No 91
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.06 E-value=1.3e+02 Score=36.57 Aligned_cols=26 Identities=15% Similarity=0.373 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003017 281 NDRRKMLEEFEMQRMNQEAELLNRRD 306 (857)
Q Consensus 281 ~Erad~l~d~EmqkreLE~~~~~r~E 306 (857)
.|+.+.++.|+++=..++..++-.++
T Consensus 456 ~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 456 EEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554444444444443333
No 92
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.68 E-value=29 Score=38.52 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017 161 EKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQ 195 (857)
Q Consensus 161 ER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~ 195 (857)
+.+.+..-..++.++.+.+-.|........+.|+.
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566677777777777777777777753
No 93
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=81.15 E-value=1.1e+02 Score=35.29 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=13.9
Q ss_pred HHHHHhhhHH-HHHHHHHHHHHhhHHHHH
Q 003017 76 QALDKKSDRV-KEKENDLAARLKSVKERE 103 (857)
Q Consensus 76 qaLe~k~~~l-keKEkdl~~K~k~LKEkE 103 (857)
.|++++.++| ++.|.|-.++....++-+
T Consensus 110 aAaE~khrKli~dLE~dRe~haqdaaeGD 138 (561)
T KOG1103|consen 110 AAAEKKHRKLIKDLEADREAHAQDAAEGD 138 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 4555555543 445555555554444433
No 94
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.21 E-value=31 Score=38.35 Aligned_cols=47 Identities=38% Similarity=0.538 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 003017 176 IETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 222 (857)
Q Consensus 176 Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~ 222 (857)
++.+......|.+|...|.++-...|.|=+.|+.-...|+.|...+.
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444444444444444433
No 95
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=80.13 E-value=70 Score=32.27 Aligned_cols=68 Identities=24% Similarity=0.426 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q 003017 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERL 239 (857)
Q Consensus 172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erL 239 (857)
|--+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.+.+.....++
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888899999999999999999999999999999999999988888887776554444
No 96
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=78.43 E-value=0.67 Score=55.77 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH
Q 003017 64 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ 143 (857)
Q Consensus 64 i~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~ 143 (857)
++|.=+++.+.|..+++=.++|.+. .+|..+++.|++.=..+.----.||.+....-.-+..|..||..|..+...+.+
T Consensus 303 lR~~a~r~~klE~~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 303 LREKADRADKLENEVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777666666664 366677777776554443333344444444444445555555555555544444
Q ss_pred HHHHH
Q 003017 144 QELQI 148 (857)
Q Consensus 144 q~~qi 148 (857)
...++
T Consensus 382 ~~~~~ 386 (713)
T PF05622_consen 382 ESRRA 386 (713)
T ss_dssp -----
T ss_pred HHHHH
Confidence 44433
No 97
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.11 E-value=58 Score=35.10 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH---H
Q 003017 158 NEEEKSELLRLQSQLKQQIETYRHQQ---ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK---L 231 (857)
Q Consensus 158 teeER~E~lrLqseLKeEId~~R~Qk---e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~ 231 (857)
...=..+|-.+-..|.++++.++.-. .++.+|.+.|-+||..+..|--+|..=.-.|+...+....+|.+... .
T Consensus 6 ir~K~~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 6 IRNKTLELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777777777777776654 34456777777777777777777777666666666666666554432 2
Q ss_pred HHhHHHHhHHHHHHHHHHH
Q 003017 232 QHSAEERLKKEECAMRDYV 250 (857)
Q Consensus 232 ~~~E~erLK~Ek~~~r~~~ 250 (857)
++.|...||.+-+.||..|
T Consensus 86 ~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 86 LYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3356666666666666553
No 98
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.83 E-value=32 Score=37.43 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=68.3
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017 162 KSELLRLQ-----SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE 236 (857)
Q Consensus 162 R~E~lrLq-----seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 236 (857)
|.=+-.|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|++.+.+.-..|+.|.-.+.+.+.++. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455666 899999999999999999999999999999999999999999999999988887766543 556
Q ss_pred HHhHHHHHHHHH
Q 003017 237 ERLKKEECAMRD 248 (857)
Q Consensus 237 erLK~Ek~~~r~ 248 (857)
.+|+..-+.+..
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 677776666554
No 99
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=75.88 E-value=2.2e+02 Score=35.62 Aligned_cols=126 Identities=21% Similarity=0.256 Sum_probs=109.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHH
Q 003017 287 LEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQ 366 (857)
Q Consensus 287 l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le 366 (857)
|-.-||.|.+||-..+...+++.+.=++-=...-+.-..+|..+.+--+.+.+.+..|...+-...++-..+.-..+-|.
T Consensus 124 la~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~ 203 (739)
T PF07111_consen 124 LAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLR 203 (739)
T ss_pred HhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999888888888888887788888888899999998899999999999888888888888888999999
Q ss_pred HHHhhhhhcHHHHHHHHHHhhHhH-HHH---------HHHHHHHHHHHHhhccccc
Q 003017 367 EQQLGMRKDIDELDILCRRLYGDR-EQF---------KREKERFLEFVEKHTSCKN 412 (857)
Q Consensus 367 ~q~~em~kdIdeL~~ls~KLk~QR-E~~---------~~ERe~fl~~vEklK~ckn 412 (857)
.|..-++.+++.-+.|=..|++.= +++ ..||.+++.-|++|..=.+
T Consensus 204 ~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~ 259 (739)
T PF07111_consen 204 EQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRD 259 (739)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888765 444 5899999999999995444
No 100
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=75.54 E-value=83 Score=30.63 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003017 125 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 204 (857)
Q Consensus 125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 204 (857)
..+..+...+..++..+..+-.....++++.+--=---.+-+.-=..||++...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445555666666666677777777776643111111111222346777777777777777777777777777777777
Q ss_pred hhhHHhHHHHHHHHHHHHHHHH
Q 003017 205 EVLDEKRDEINKEQEKIADEKK 226 (857)
Q Consensus 205 E~LDEKR~el~KEa~~I~eEre 226 (857)
+ +-+..|.+|...+..-..
T Consensus 97 ~---~qk~~le~e~~~~~~r~~ 115 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQRIE 115 (132)
T ss_pred H---HHHHHHHHHHHHHHHHHH
Confidence 5 345555555554444333
No 101
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.08 E-value=1.8e+02 Score=34.37 Aligned_cols=124 Identities=24% Similarity=0.236 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhh--hh-----hhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003017 21 LDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEF--EI-----SHREEKLERREQALDKKSDRVKEKENDLA 93 (857)
Q Consensus 21 ldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEv--ei-----~h~Eekl~kREqaLe~k~~~lkeKEkdl~ 93 (857)
|..+.+.|.....+.+.|+...|.-+++-...|...|..... .+ ..+.+++..-+.||...-..+......+-
T Consensus 107 l~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl 186 (511)
T PF09787_consen 107 LSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFL 186 (511)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 344566666667777777777766666643444444432221 12 55666666666666666555555555554
Q ss_pred HHHhhHH----HHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHH
Q 003017 94 ARLKSVK----EREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQE 145 (857)
Q Consensus 94 ~K~k~LK----EkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~ 145 (857)
.+.-.+. .-+..+.|.. .+-..+.+...=.+.+..++..++-.++++.+=+
T Consensus 187 ~rtl~~e~~~~~L~~~~~A~~-~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 187 KRTLKKEIERQELEERPKALR-HYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4443222 2222223222 2222233333333444555555555555554444
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.84 E-value=2.2e+02 Score=34.75 Aligned_cols=186 Identities=21% Similarity=0.258 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 109 EEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLK 188 (857)
Q Consensus 109 eEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~Llk 188 (857)
.++.|+.-+..+..--++++.++.+.-.++..++.| .|+-++=..+..=--+|+++|+++-.+...|++
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-----------~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-----------GISGEDVERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433444444444444444444433 344444444444445788899999999999999
Q ss_pred HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH-HH------------------HHHHHHHHHHhHHHHhHHHHHHHHHH
Q 003017 189 EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKI-AD------------------EKKKLEKLQHSAEERLKKEECAMRDY 249 (857)
Q Consensus 189 Eae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I-~e------------------Ere~lek~~~~E~erLK~Ek~~~r~~ 249 (857)
++=+++-+-+.|=++-+.+=-.=..+-..+..+ ++ -|..+..+++...+.+..+ =..
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~----~~~ 436 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEE----LHE 436 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHH----HHH
Confidence 998888888877665544322222222222222 10 1222233332222222211 122
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003017 250 VQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK 310 (857)
Q Consensus 250 ~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~ 310 (857)
.+.++.+|.... +=++.|-.|+-.+.+.++.+-.+..--+++-|++-+.+..+-+-|||+
T Consensus 437 ~~~~~~tLq~~~-~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~ 496 (581)
T KOG0995|consen 437 AENELETLQEHF-SNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEK 496 (581)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233444444333 335666678888888888888888888888888888877777777664
No 103
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=73.36 E-value=1.3e+02 Score=31.88 Aligned_cols=94 Identities=20% Similarity=0.299 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHH
Q 003017 264 FEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE--RVLNDIAHLKEVAEGEI 341 (857)
Q Consensus 264 F~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~--~EL~~In~lkE~a~~E~ 341 (857)
|+.+=.+++..-..++...-.+-...|+-+|.+|......+..+++..|-++++.+-.-+. ..|..|..+|+-..+||
T Consensus 8 yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI 87 (206)
T PF14988_consen 8 YLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREI 87 (206)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444445555555555555556666666666666666666666666667666666543322 34566677777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 003017 342 QEIKSERDQLEKEKHE 357 (857)
Q Consensus 342 E~v~lE~~rLekEr~E 357 (857)
..+.-++.++..+-.+
T Consensus 88 ~~Le~e~~~~~~e~~~ 103 (206)
T PF14988_consen 88 QTLEEELEKMRAEHAE 103 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666544
No 104
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.30 E-value=1e+02 Score=30.65 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=29.2
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189 (857)
Q Consensus 154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkE 189 (857)
.++.++.|-.+|+.|=..|-.-|.+||.....|=-+
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~e 113 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEE 113 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCC
Confidence 445678899999999999999999999887766433
No 105
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=73.22 E-value=2.5e+02 Score=35.11 Aligned_cols=176 Identities=23% Similarity=0.329 Sum_probs=90.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHH
Q 003017 35 FELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERRE------QALDKKSDRVKEKENDLAARLKSVKEREKFVKA 108 (857)
Q Consensus 35 FElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kRE------qaLe~k~~~lkeKEkdl~~K~k~LKEkEksLka 108 (857)
+=+||..+-..+++..+.+.. +|++|...-.-|++.. .-+++-.+.|+..+.+|... |.-+|+.+.-
T Consensus 382 l~~eLqkks~eleEmtk~k~~----ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~l---lq~~ekev~d 454 (786)
T PF05483_consen 382 LTMELQKKSSELEEMTKQKNN----KEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGL---LQIREKEVHD 454 (786)
T ss_pred HHHHHHHhhHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHH
Confidence 334555555555555544432 3333333333333333 23444445555555555443 3333444444
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc-------cHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 109 EEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI-------NEEEKSELLRLQSQLKQQIETYRH 181 (857)
Q Consensus 109 eEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki-------teeER~E~lrLqseLKeEId~~R~ 181 (857)
.+ .+|-...+.=+.+-..++.++..++++..+=.+-..+... +.-+++....==.++.+-|...+.
T Consensus 455 Le-------~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~ 527 (786)
T PF05483_consen 455 LE-------IQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKK 527 (786)
T ss_pred HH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44 4444444444444444444444444433332222111111 112222222222356778888999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 003017 182 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE 224 (857)
Q Consensus 182 Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eE 224 (857)
|.+-++++++.|......+-.|.+.+-+.-+.-.-|.++--..
T Consensus 528 qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~k 570 (786)
T PF05483_consen 528 QEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDK 570 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999998888888778777766655555555553333
No 106
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=72.96 E-value=1.1 Score=53.88 Aligned_cols=52 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 267 TMRHEQLVLSEKAKNDR------RKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTF 319 (857)
Q Consensus 267 ~M~hErs~~~ek~q~Er------ad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~F 319 (857)
.++.|+..|..-++..= .+|.+.|..-+. -...+..+.-.+...+..++...
T Consensus 316 ~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~-~~~~L~ek~g~~~~~~~~l~~~~ 373 (722)
T PF05557_consen 316 KLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQ-ENASLTEKLGSLQSELRELEEEI 373 (722)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHH
Confidence 56678888887666521 244444432221 12233444455555555544433
No 107
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=72.12 E-value=2.9e+02 Score=35.33 Aligned_cols=311 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHH---HHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 78 LDKKSDRVKEKENDLAA---RLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQK 154 (857)
Q Consensus 78 Le~k~~~lkeKEkdl~~---K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~ 154 (857)
|..-+..|.....-|+. ...-++.++-.+-+..+....+++-+++-+.-|.+.|.++|++.+.-+++..+ ++-
T Consensus 521 L~~m~~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~~~v~~E~krilaRk~liE~rKe~~E~~~~~re~Eea~----~q~ 596 (988)
T KOG2072|consen 521 LTAMAESLSKVVEELDPVIIRNSRAKKKEGAVTNYLKNVDKEHKRILARKSLIEKRKEDLEKQNVEREAEEAQ----EQA 596 (988)
T ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHH
Q ss_pred hhccHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH------HhHHHHH
Q 003017 155 LKINEEEKSELLRLQSQLKQQ-------------IETYRHQQELLLKEHEDLQQDREKFEKEWEVLD------EKRDEIN 215 (857)
Q Consensus 155 LkiteeER~E~lrLqseLKeE-------------Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD------EKR~el~ 215 (857)
.+.-+..-.|-.||+.+.++. +..++-+...|+.=+=..|.=+..=..+-+.|| .-.++|.
T Consensus 597 ~e~~~~r~aE~kRl~ee~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~ 676 (988)
T KOG2072|consen 597 KEQRQAREAEEKRLIEEKKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELE 676 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003017 216 KEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRM 295 (857)
Q Consensus 216 KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~Emqkr 295 (857)
||.+.+..-=+..++-+..=+--++.|.-.+ ++........+--.|-.-|+..|-+-...----+-.-..-|-+..-
T Consensus 677 Ke~kElq~rL~~q~KkiDh~ERA~R~EeiPL---~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~k~~l~rm~~ 753 (988)
T KOG2072|consen 677 KERKELQSRLQYQEKKIDHLERAKRLEEIPL---IEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKDKKRLSRMYD 753 (988)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhh---HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHhHHHHHHhh
Q 003017 296 NQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKS----ERDQLEKEKHEVKVNREKLQEQQLG 371 (857)
Q Consensus 296 eLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~l----E~~rLekEr~Ei~~~ke~le~q~~e 371 (857)
+-..=.+.=--+-++.+.+.-+.|+..-+.|= |.|.|.....+++.+. +.-.=..-|.|=..++++-++ .++
T Consensus 754 d~~~f~e~vk~~rqs~~~e~~~~~ea~leaer---~rl~erk~~R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee-~~e 829 (988)
T KOG2072|consen 754 DRDKFKEHVKGERQSEYEEKLKQFEARLEAER---NRLAERKRARIEERKQAYYREIEEERARREEEEANAERQEE-AAE 829 (988)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q ss_pred hhhcHHHHHH---HHHHhhHhHHHHHHHHHH
Q 003017 372 MRKDIDELDI---LCRRLYGDREQFKREKER 399 (857)
Q Consensus 372 m~kdIdeL~~---ls~KLk~QRE~~~~ERe~ 399 (857)
..++..+... ...+..+||..-.-+|++
T Consensus 830 ~akr~~~eRe~e~~~ak~ekqr~re~~ereR 860 (988)
T KOG2072|consen 830 RAKRTEEEREIENRVAKKEKQRQRETEERER 860 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhh
No 108
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=71.90 E-value=1.5e+02 Score=33.49 Aligned_cols=121 Identities=16% Similarity=0.347 Sum_probs=99.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Q 003017 130 LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDE 209 (857)
Q Consensus 130 lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDE 209 (857)
|-..|+.-...|.+---|++.+.-.|.--..++.|+++ +...+=|+.+++|..+||...+ .+++++++.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 44556666666777778899999999999999999996 5567889999999999997665 578899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcH
Q 003017 210 KRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 261 (857)
Q Consensus 210 KR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 261 (857)
+--.|..=+.+|..==--++|+++.-.| +|-.+|.-.+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998877778888777665 577888888888888887643
No 109
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.70 E-value=1.4e+02 Score=31.30 Aligned_cols=68 Identities=28% Similarity=0.434 Sum_probs=34.7
Q ss_pred HHHhhhHHHHHHH----HHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHH
Q 003017 40 EEKRKSIEEEMRS----KISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVK 107 (857)
Q Consensus 40 E~kRKs~deel~~----K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLk 107 (857)
+..+..+++-|.. ....+.+...++.+.+..+..-.+.++.....+..+.+.+...-..|..+...|.
T Consensus 37 ~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 37 EELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444442 3444555555555555555555555555555555555555555555555544444
No 110
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=70.64 E-value=56 Score=42.00 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=4.2
Q ss_pred HHHHHHHhhc
Q 003017 399 RFLEFVEKHT 408 (857)
Q Consensus 399 ~fl~~vEklK 408 (857)
.|+.-++...
T Consensus 528 ~~~~~~~~~~ 537 (1021)
T PTZ00266 528 YFLKGMENGL 537 (1021)
T ss_pred hhhhhccccc
Confidence 3444444443
No 111
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=70.26 E-value=2e+02 Score=32.73 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017 310 KELQERTRTFEEKRERVLNDIAHLKEVAEG 339 (857)
Q Consensus 310 ~~L~EREk~FEeek~~EL~~In~lkE~a~~ 339 (857)
+||++|-++.++|+.--..+|+-.|.++.+
T Consensus 199 RyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 199 RYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999998887764
No 112
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=69.93 E-value=1.1e+02 Score=38.33 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 105 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQE 184 (857)
Q Consensus 105 sLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke 184 (857)
.+...=.+|+.++.+++..++++..+..++++.+..++.++.++.++.+++ +..+..+..+-|...|.+-+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~---------~~~~~~~a~~~l~~a~~~~~ 587 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL---------LEEAEKEAQQAIKEAKKEAD 587 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555555555555555555555555555554333322 23344445555666666666
Q ss_pred HHHHHHhH
Q 003017 185 LLLKEHED 192 (857)
Q Consensus 185 ~LlkEae~ 192 (857)
.++++...
T Consensus 588 ~~i~~lk~ 595 (782)
T PRK00409 588 EIIKELRQ 595 (782)
T ss_pred HHHHHHHH
Confidence 66655543
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=68.58 E-value=3.5e+02 Score=34.83 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=55.2
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 254 IEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL---NRRDKMEKELQERTRTFEEKRERV 326 (857)
Q Consensus 254 lE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~---~r~EE~E~~L~EREk~FEeek~~E 326 (857)
+|.+.++..- ..+|-.+.+...+.+.+|.+-++..|+-..+++.+..+ +...+++-.|..|-+.|.+...++
T Consensus 475 le~~~~~~~~-~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~ 549 (980)
T KOG0980|consen 475 LEELQRAAGR-AETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVARE 549 (980)
T ss_pred HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444333 34566778888899999999999999998888777665 567788888999999998888777
No 114
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.87 E-value=1.3e+02 Score=37.69 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 114 ELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 190 (857)
Q Consensus 114 E~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEa 190 (857)
+.-...|..++.+++..+.++++.+.+++..+.++.++.+.|+. ..+..+..+..+..+.|.+.|.+-+.+.++.
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~--~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~l 588 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE--RERNKKLELEKEAQEALKALKKEVESIIREL 588 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444333333333333332 2222233445555566666666655555544
No 115
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=67.59 E-value=1.4e+02 Score=37.24 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH
Q 003017 70 KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQK 119 (857)
Q Consensus 70 kl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~q 119 (857)
.+......++.-++.|.+...+++.+...+......+....++|+.+...
T Consensus 505 ~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 505 FYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444433333333333333333333333333
No 116
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.06 E-value=2.1e+02 Score=34.17 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003017 70 KLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 148 (857)
Q Consensus 70 kl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi 148 (857)
-+....+.++.++..+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|+..|
T Consensus 372 ~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 372 DLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34566777888888888888888888888887777776543 44444554444444444444455555555555544
No 117
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=66.99 E-value=2.7e+02 Score=33.02 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 275 LSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTF 319 (857)
Q Consensus 275 ~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~F 319 (857)
+.+++-+||+-.+..|+ .|..+...+|..+..+....
T Consensus 365 i~~~v~~Er~~~~~~l~--------~~~~~~~~le~~~~~~~~~~ 401 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLA--------ELNSRLKALEEALDARSEAE 401 (582)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 34556666655555543 34455556666666655444
No 118
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.95 E-value=1.8e+02 Score=30.91 Aligned_cols=171 Identities=20% Similarity=0.318 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhh
Q 003017 44 KSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIAD 123 (857)
Q Consensus 44 Ks~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~e 123 (857)
..+...|+......++-|.++..+--+|.--|..|+.--.+|......|..-.+.+.+-+..++..+. ....+
T Consensus 18 ~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~-------r~~~~ 90 (237)
T PF00261_consen 18 EEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN-------REQSD 90 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHH
Confidence 34455666666677777778877777777777777777777777777777777777777777776663 33344
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 124 KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEE------KSELL-RLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 124 keel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeE------R~E~l-rLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
=+.|..|...|.......++--.+..+..-+|.+++.+ |.+.+ .-=.+|.++|..+......|..=.+..-+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 45555555666666655555555555555555555432 22221 111244555555555555555555555555
Q ss_pred HHHHHHHHhhhHHhHHHHHHHHHHH
Q 003017 197 REKFEKEWEVLDEKRDEINKEQEKI 221 (857)
Q Consensus 197 KekFE~EWE~LDEKR~el~KEa~~I 221 (857)
-..||..-..|..+-.+...-+...
T Consensus 171 e~~~e~~i~~L~~~lkeaE~Rae~a 195 (237)
T PF00261_consen 171 EDEYEEKIRDLEEKLKEAENRAEFA 195 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655554444443
No 119
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.84 E-value=2.7e+02 Score=33.03 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=24.6
Q ss_pred HHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 003017 27 ILDAKQQEFELELEEKRKSIEEEMRSKISALDQ 59 (857)
Q Consensus 27 ~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~ 59 (857)
.|.-+|-.||.=|++.|.=|-+.|-+|++-++-
T Consensus 140 qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen 172 (552)
T KOG2129|consen 140 QLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLEN 172 (552)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466677888888888887777777777766554
No 120
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.20 E-value=3.8e+02 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003017 15 VEIQKLLDDQRAILDAK 31 (857)
Q Consensus 15 ~eIQKLldeh~a~L~~K 31 (857)
.+.-.+|+-++.+++.+
T Consensus 38 dlk~r~L~aeniiqdlr 54 (1265)
T KOG0976|consen 38 DLKKRLLDAENIIQDLR 54 (1265)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556777777777765
No 121
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.78 E-value=4.1e+02 Score=34.71 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=13.4
Q ss_pred CCCCcchHHHhhhhhhh---ccCCCC
Q 003017 474 DSGGHMSWLRKCTSKIF---SISPIK 496 (857)
Q Consensus 474 ~s~g~~SwlrKCtskIF---k~SP~K 496 (857)
-|||-=|++-=| .|| +|+|..
T Consensus 1083 LSGGQRSLVALs--LIlamL~fkPAP 1106 (1174)
T KOG0933|consen 1083 LSGGQRSLVALS--LILAMLKFKPAP 1106 (1174)
T ss_pred hcCchHHHHHHH--HHHHHHcCCCCc
Confidence 667777787665 554 566643
No 122
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.38 E-value=3e+02 Score=33.02 Aligned_cols=39 Identities=18% Similarity=0.332 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHH
Q 003017 103 EKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESEN 141 (857)
Q Consensus 103 EksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~ 141 (857)
++.|+....-|..-+++|+.-|.+-..|.+++.|+++..
T Consensus 389 ~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ny 427 (527)
T PF15066_consen 389 EKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANY 427 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhH
Confidence 566666666666667777777777777777777776654
No 123
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=64.92 E-value=1.6e+02 Score=33.57 Aligned_cols=153 Identities=22% Similarity=0.332 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHH---HHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Q 003017 16 EIQKLLDDQRAILDAKQQEFEL---ELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDL 92 (857)
Q Consensus 16 eIQKLldeh~a~L~~Kk~eFEl---ElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl 92 (857)
|+.++|---++.|.+--.+.-+ .|...++.++.-+.+--.-|.+-=.+|..-=+||+-||.-|+-++.-|-.+=+.+
T Consensus 206 EvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a 285 (384)
T KOG0972|consen 206 EVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRA 285 (384)
T ss_pred HHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444554455555444444443 4667788888877777778888888999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHhhhhccHHHH--------
Q 003017 93 AARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQ--QELQIQEECQKLKINEEEK-------- 162 (857)
Q Consensus 93 ~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~--q~~qi~ee~e~LkiteeER-------- 162 (857)
..-+..|+++-+.+.-- .+.....|..=-.+|+.+|.++|.-.+.+.+ =..+|.++.-+|+ +|+
T Consensus 286 ~~~lse~~e~y~q~~~g---v~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk---~et~~mnv~ig 359 (384)
T KOG0972|consen 286 TDTLSELREKYKQASVG---VSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLK---EETQTMNVQIG 359 (384)
T ss_pred HHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHH---HHHHhhhhhee
Confidence 99999999987766543 3445555555566777777777765555443 3566777666654 444
Q ss_pred -HHHHHHHHHHHH
Q 003017 163 -SELLRLQSQLKQ 174 (857)
Q Consensus 163 -~E~lrLqseLKe 174 (857)
.+|..||+.|+.
T Consensus 360 v~ehs~lq~~l~~ 372 (384)
T KOG0972|consen 360 VFEHSILQTYLRD 372 (384)
T ss_pred hhhHHHHHHHHHH
Confidence 367788888876
No 124
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=64.88 E-value=3e+02 Score=34.72 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHhhHHHHH
Q 003017 46 IEEEMRSKISALDQQEFEISHREEKLERREQALDK--KSDRVKEKENDLAARLKSVKERE 103 (857)
Q Consensus 46 ~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~--k~~~lkeKEkdl~~K~k~LKEkE 103 (857)
++++|.+|.++|-+-|--+...-+.+.--|..|-. ++++|-+.|-.|..+.++|-.-+
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~ae 155 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAE 155 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 45666666666666555555544444444444432 25677777778877777764433
No 125
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=63.52 E-value=4.3e+02 Score=34.14 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=9.0
Q ss_pred HHHhhccccchhhh
Q 003017 403 FVEKHTSCKNCGEM 416 (857)
Q Consensus 403 ~vEklK~ckncg~~ 416 (857)
.+..=.-|.=||-+
T Consensus 499 ~L~~GePCPVCGS~ 512 (1047)
T PRK10246 499 QLQAGQPCPLCGST 512 (1047)
T ss_pred hCCCCCCcCCCCcc
Confidence 33444579999943
No 126
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=62.68 E-value=3.2e+02 Score=32.32 Aligned_cols=86 Identities=19% Similarity=0.161 Sum_probs=52.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003017 115 LEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 194 (857)
Q Consensus 115 ~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk 194 (857)
.....|.++...|...+..|+--++.+....-.....+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444555555555555555555555555555555566666666555544 345666667777777777777777777
Q ss_pred HHHHHHHHH
Q 003017 195 QDREKFEKE 203 (857)
Q Consensus 195 ~eKekFE~E 203 (857)
++..+-|.+
T Consensus 238 ~~Ias~e~~ 246 (420)
T COG4942 238 NEIASAEAA 246 (420)
T ss_pred HHHHHHHHH
Confidence 777766644
No 127
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=80 Score=38.57 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=44.4
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHH
Q 003017 154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIA 222 (857)
Q Consensus 154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~ 222 (857)
.++-.+.|-++|.+.=.+||.+|++|+.+...+..+.+ .+.+-.+|-+.+|+.-..|++++..=.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777778888888888777777766 455556677777777777777665433
No 128
>PRK09039 hypothetical protein; Validated
Probab=61.63 E-value=2.8e+02 Score=31.37 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=59.5
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Q 003017 91 DLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQS 170 (857)
Q Consensus 91 dl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqs 170 (857)
.+.++.....+-+..+.....+|...+...-...-.+..|+.+|+.+++.+..=...|.....+. .
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~--------------~ 168 (343)
T PRK09039 103 LLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD--------------R 168 (343)
T ss_pred HHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
Confidence 33344444445555555556667777777666667777777777766655333322222222211 5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Q 003017 171 QLKQQIETYRHQQELLLKE-HEDLQQDREKFEKEW 204 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkE-ae~Lk~eKekFE~EW 204 (857)
+.+..|+.+....+.++++ ..+|..=|..|-..-
T Consensus 169 ~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 169 ESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6667777777777777765 777777777776554
No 129
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.05 E-value=4.4e+02 Score=33.40 Aligned_cols=143 Identities=19% Similarity=0.292 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Q 003017 164 ELLRLQSQLKQQIETYRHQQELLLK--EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKK 241 (857)
Q Consensus 164 E~lrLqseLKeEId~~R~Qke~Llk--Eae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 241 (857)
+|...|-.||++--........|.+ --|-|||-++..+.|-.+++ -..+..+...|+-.++.--..-|.
T Consensus 879 d~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~e---------kdFv~kqqq~le~~lkrm~~~~k~ 949 (1187)
T KOG0579|consen 879 DMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKE---------KDFVMKQQQNLEAMLKRMAEKHKE 949 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777776655544444443 34678888888888876643 456777777888887777777777
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 003017 242 EECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTR 317 (857)
Q Consensus 242 Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk 317 (857)
+..++..++-.+--.|-++||.-.=. -|-.-+.+|-|.-+.+|....=|||+.|-..-++..+.|++|-+.-..
T Consensus 950 ema~iErecLm~Kq~LlRarEaaiWE--lEe~qlqEkhqL~kqqlKDqYflqRhqlL~rHekE~eQmqrynQr~ie 1023 (1187)
T KOG0579|consen 950 EMASIERECLMQKQNLLRAREAAIWE--LEEKQLQEKHQLHKQQLKDQYFLQRHQLLARHEKEMEQMQRYNQREIE 1023 (1187)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777666666777777764443 445567889999999999999999999999999999999999775443
No 130
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.67 E-value=96 Score=35.22 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=36.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003017 77 ALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKV 132 (857)
Q Consensus 77 aLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~ 132 (857)
-+..+-..|++.|++|.+|+.-||.- -.-+.++|+..+.+|..|.-.++.-|+
T Consensus 349 rvkekE~elke~Ekel~~kf~~lkr~---h~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 349 RVKEKEAELKEAEKELHEKFDRLKRL---HQEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888888888753 233456788888888887777666554
No 131
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=59.73 E-value=1e+02 Score=30.89 Aligned_cols=17 Identities=29% Similarity=0.476 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003017 170 SQLKQQIETYRHQQELL 186 (857)
Q Consensus 170 seLKeEId~~R~Qke~L 186 (857)
.+|++||..+..+...|
T Consensus 119 ~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 119 EELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=59.30 E-value=1.5e+02 Score=36.30 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003017 267 TMRHEQLVLSEKAKNDRRKM 286 (857)
Q Consensus 267 ~M~hErs~~~ek~q~Erad~ 286 (857)
+++|||.--.++|-++|+++
T Consensus 681 ~ve~eRr~eqeRihreReel 700 (940)
T KOG4661|consen 681 KVEEERRDEQERIHREREEL 700 (940)
T ss_pred HHHHhhcchhhhhhhhHHHH
Confidence 34445555555555555443
No 133
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=58.81 E-value=1.8e+02 Score=36.36 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhHHH
Q 003017 64 ISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESL-QILKVEIDQIESENA 142 (857)
Q Consensus 64 i~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel-~~lK~elEK~~a~~e 142 (857)
|....+.+......++.-...|.....+++.+...+......+.....+|+.++..|.+.++.+ ..++.+.+.+.....
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666666666666666665555555555555555555544433 333334433333333
No 134
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.75 E-value=1.5e+02 Score=30.82 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 003017 127 LQILKVEIDQIESENAQQELQI 148 (857)
Q Consensus 127 l~~lK~elEK~~a~~e~q~~qi 148 (857)
+..|+.+++.+...+..-..+|
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444433333333333
No 135
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=58.12 E-value=3.3e+02 Score=31.06 Aligned_cols=39 Identities=31% Similarity=0.282 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccch
Q 003017 375 DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNC 413 (857)
Q Consensus 375 dIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~cknc 413 (857)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+-=.|
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~ 228 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER 228 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999964443
No 136
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=58.03 E-value=2.5e+02 Score=29.57 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=74.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHHH---HHH
Q 003017 99 VKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK-INEEEKSELLRLQSQ---LKQ 174 (857)
Q Consensus 99 LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk-iteeER~E~lrLqse---LKe 174 (857)
|+.+-+.+....|.++..-..+++++. .....++|++...+.-..++...+.+.. ++.. +.-.++.+ ...
T Consensus 91 l~~~~~~~~~~rK~~~~~~~k~~k~~~---~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~k---e~eK~~~k~~k~~~ 164 (236)
T cd07651 91 LAAFASSYTQKRKKIQSHMEKLLKKKQ---DQEKYLEKAREKYEADCSKINSYTLQSQLTWGK---ELEKNNAKLNKAQS 164 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcc---hHHHHHHHHHHHHH
Confidence 334444555566666655555555543 3455788888887777776665544322 1212 23333433 445
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Q 003017 175 QIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYV 250 (857)
Q Consensus 175 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~ 250 (857)
++..++..-.....+....+ ..|+.+|.. .+..|+.-|++||.-=+..|..|.
T Consensus 165 ~~~~~~~~Y~~~v~~~~~~~---~~~~~~~~~--------------------~~~~~Q~lEe~Ri~~lk~~l~~~a 217 (236)
T cd07651 165 SINSSRRDYQNAVKALRELN---EIWNREWKA--------------------ALDDFQDLEEERIQFLKSNCWTFA 217 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666676666666655553 468888854 467788888888887777777654
No 137
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=57.93 E-value=4.4e+02 Score=32.45 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=26.8
Q ss_pred HHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHH-h--HHHHhHHHHHHHHHH
Q 003017 199 KFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQH-S--AEERLKKEECAMRDY 249 (857)
Q Consensus 199 kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~-~--E~erLK~Ek~~~r~~ 249 (857)
..+-+|..+-++=+.-..|+..+..++..+..++. + ....|-.++.++..+
T Consensus 206 ~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q 259 (617)
T PF15070_consen 206 ELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQ 259 (617)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666555555677777777766554332 1 223444444444433
No 138
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=56.83 E-value=4.5e+02 Score=32.23 Aligned_cols=208 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017 159 EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEER 238 (857)
Q Consensus 159 eeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~er 238 (857)
+.++.+--.=-.+|+++|+.++.+.+.+..+.+.|+......+.|-+......++|+++.+ -+++...++.+-...
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~----l~~k~~~lL~d~e~n 395 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK----LKKKTVELLPDAEEN 395 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCcHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 003017 239 LKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRT 318 (857)
Q Consensus 239 LK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~ 318 (857)
| .....+=+.-...+..|..+=+..-.-+..|-..|-.....--.+..+=++--+ .+.....+++..++.++..
T Consensus 396 i-~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik-----~~r~~~k~~~~e~~~Kee~ 469 (594)
T PF05667_consen 396 I-AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIK-----ELREEIKEIEEEIRQKEEL 469 (594)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHh
Q 003017 319 FEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGD 389 (857)
Q Consensus 319 FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~Q 389 (857)
+.+-.. ++..++-... |.--=+--.||..|-.|-+++..-|-.|+-.|..--+.|..+
T Consensus 470 ~~qL~~-e~e~~~k~~~------------Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gk 527 (594)
T PF05667_consen 470 YKQLVK-ELEKLPKDVN------------RSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGK 527 (594)
T ss_pred HHHHHH-HHHhCCCCCC------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 139
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=56.55 E-value=81 Score=37.51 Aligned_cols=30 Identities=30% Similarity=0.425 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 167 RLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 167 rLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
-.|.=||--||+.|.|..-+.-|-.+||-+
T Consensus 507 niq~llkva~dnar~qekQiq~Ek~ELkmd 536 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQLEKTELKMD 536 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999998888777766544
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.40 E-value=2.8e+02 Score=29.61 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Q 003017 183 QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 240 (857)
Q Consensus 183 ke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK 240 (857)
...|.+|.+.|+......++-=..+....+.|+.....|..-+..|.-++..-.+.|+
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444455555555555666666666555555555544443
No 141
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=55.85 E-value=2.6e+02 Score=29.15 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHH
Q 003017 128 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSE 164 (857)
Q Consensus 128 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E 164 (857)
..++..++++.+.++.-..+|...+..|...+..|.+
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~ 101 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREE 101 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3444444444444444444444444444444444433
No 142
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=55.28 E-value=5.1e+02 Score=32.37 Aligned_cols=11 Identities=55% Similarity=0.748 Sum_probs=5.0
Q ss_pred hHHHHHHHHHH
Q 003017 45 SIEEEMRSKIS 55 (857)
Q Consensus 45 s~deel~~K~~ 55 (857)
++|.||++++.
T Consensus 439 q~E~ELRsqis 449 (697)
T PF09726_consen 439 QSEQELRSQIS 449 (697)
T ss_pred hhHHHHHHHHh
Confidence 34444444433
No 143
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=55.24 E-value=2.5e+02 Score=28.83 Aligned_cols=83 Identities=20% Similarity=0.358 Sum_probs=53.5
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Q 003017 58 DQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELE-KQKLIADKESLQILKVEIDQ 136 (857)
Q Consensus 58 e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~e-k~qL~~ekeel~~lK~elEK 136 (857)
.+.|..+...|+.+....++|..+...|.+--+-|..+++.+...-..|...+-+|-.+ ...-..+++-|..++.-+++
T Consensus 74 ~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 74 KQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVER 153 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466667777777777888888888888877777777776655544444333333222 22334567777888888888
Q ss_pred HHhH
Q 003017 137 IESE 140 (857)
Q Consensus 137 ~~a~ 140 (857)
.+..
T Consensus 154 ~k~~ 157 (158)
T PF09744_consen 154 QKDE 157 (158)
T ss_pred HHhc
Confidence 7654
No 144
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=55.12 E-value=88 Score=29.13 Aligned_cols=55 Identities=22% Similarity=0.410 Sum_probs=30.7
Q ss_pred HHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003017 147 QIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE 201 (857)
Q Consensus 147 qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 201 (857)
+|.++.+-+...+=|=.|+----..|.+|++.+|+....|..|.+.||++...|.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444455666666666666666666666666665543
No 145
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=54.97 E-value=3.1e+02 Score=33.96 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=102.7
Q ss_pred cccchhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhh
Q 003017 4 FKNFCIYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSD 83 (857)
Q Consensus 4 ~~~~~i~~rE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~ 83 (857)
+.|+--+.+|+..|+|.+..+-..|-. |-+|..++. +++..++..--.. .-+..|.|++..+++
T Consensus 30 le~~~~~~~era~~ek~y~~~l~~l~~-k~~~q~~~~-------d~v~~~~~~q~~~--------~~~lq~~~~i~~r~e 93 (640)
T KOG3565|consen 30 LERIVQFLKERADKEKEYEEKLRSLCK-KFEFQSKSG-------DEVAESVSGQPLF--------SELLQRAQQIATRLE 93 (640)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHhhh-HhhcCCccc-------chHHHHhccCcch--------hHHHHHHHHHHHHHH
Confidence 445566779999999999999999987 666654443 3333333221111 234566777777777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHH-H
Q 003017 84 RVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEE-K 162 (857)
Q Consensus 84 ~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeE-R 162 (857)
-++.-...+-.=+.++.....-|.+..+.++....++.+. +.+.....+-+.+.-.++.-...-.++++. .++-+ =
T Consensus 94 ~l~~e~~~v~~~~~~t~k~~~~l~~~~~~~~s~~~~~~~~-~~~~~~~ne~~~~~~~~~k~~~~~~ea~~~--~~k~d~~ 170 (640)
T KOG3565|consen 94 ILKIEDEEVKKSLEATLKTSLDLVAQRKQLESDLFQARNT-ELLKSTVNEHEDSYYQLEKRRKDQEEAEQF--FHKMDEN 170 (640)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHhH--HHHhhhh
Confidence 7755444444455666666677888888888888888885 777888888887777777666666665555 23222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 003017 163 SELLRLQSQLKQQIETYRHQ 182 (857)
Q Consensus 163 ~E~lrLqseLKeEId~~R~Q 182 (857)
.+..++..++..-++..++.
T Consensus 171 l~~s~~e~e~~~~~~~~~~~ 190 (640)
T KOG3565|consen 171 LEGSRLELEKARKLALLREE 190 (640)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 34455666665555555543
No 146
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=52.95 E-value=4.5 Score=48.90 Aligned_cols=60 Identities=28% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 003017 171 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEK 230 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek 230 (857)
.++-+|+.|+.|-..|.....+......+.+.|-..|.+|=..|+++..++..++..|..
T Consensus 360 ~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e 419 (713)
T PF05622_consen 360 ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLRE 419 (713)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366678888888888888888888877777777788888888888888887777766543
No 147
>PTZ00121 MAEBL; Provisional
Probab=52.73 E-value=7.9e+02 Score=33.80 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhccccc
Q 003017 394 KREKERFLEFVEKHTSCKN 412 (857)
Q Consensus 394 ~~ERe~fl~~vEklK~ckn 412 (857)
.+-|+.||-.-.. +.|.|
T Consensus 1930 ~ktRE~II~lSk~-N~C~N 1947 (2084)
T PTZ00121 1930 EETREEIIKISKK-DMCIN 1947 (2084)
T ss_pred HHHHHHHHHHHhc-CCccC
Confidence 4567777766665 55654
No 148
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=52.48 E-value=1.9e+02 Score=27.11 Aligned_cols=60 Identities=22% Similarity=0.459 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 003017 165 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKL 228 (857)
Q Consensus 165 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~l 228 (857)
|..|+++.++=||++ .+|.-|+++||.+......|-+.+-.-|..|..|...+..++-+.
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 456788999989886 578888888887777766666666666666666666555555443
No 149
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.00 E-value=4.8e+02 Score=31.13 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=48.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHH
Q 003017 184 ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEA 263 (857)
Q Consensus 184 e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEs 263 (857)
..|..-...+++.+.++-..-+.|-..+.++++++..+..--. ..+.|..+...++..|..--..|+..|..
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~--------~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE--------SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666554333 34456666777777777777777777777
Q ss_pred HHHHHH
Q 003017 264 FEATMR 269 (857)
Q Consensus 264 F~~~M~ 269 (857)
......
T Consensus 376 ~a~~l~ 381 (563)
T TIGR00634 376 AAERLA 381 (563)
T ss_pred HHHHHH
Confidence 765544
No 150
>PF13514 AAA_27: AAA domain
Probab=51.59 E-value=6.6e+02 Score=32.58 Aligned_cols=95 Identities=17% Similarity=0.291 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhH
Q 003017 339 GEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMR 418 (857)
Q Consensus 339 ~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~ 418 (857)
.+++.+..++..|+.+..++...+-.++.+...|..+ + .+-.-...+..-+..+-..++++-.+.-+..++.
T Consensus 896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-~-------~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~ 967 (1111)
T PF13514_consen 896 AELEELEEELEELEEELEELQEERAELEQELEALEGD-D-------DAAELEQEREEAEAELEELAEEWAALRLAAELLE 967 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-c-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555554444444444444444333 1 1222233333344445555566666666666665
Q ss_pred HHHhhcCCCCCccccCCCCChHHHHhhhc
Q 003017 419 AFVISNLQLPDDEARNDIPLPQVAERCLG 447 (857)
Q Consensus 419 efvlsdLql~d~e~~~~~~~~~~ad~~~~ 447 (857)
+.. ....+...||+-..+..||.
T Consensus 968 ~a~------~~~r~~~~p~vl~~As~~f~ 990 (1111)
T PF13514_consen 968 EAI------ERYREERQPPVLARASEYFS 990 (1111)
T ss_pred HHH------HHHHHHhhHHHHHHHHHHHH
Confidence 542 23334445666666667765
No 151
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=51.47 E-value=3.3e+02 Score=29.03 Aligned_cols=198 Identities=21% Similarity=0.291 Sum_probs=112.0
Q ss_pred HHHHH-HHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 112 KLELE-KQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH 190 (857)
Q Consensus 112 ~lE~e-k~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEa 190 (857)
.|+.+ +..-..+-.-+..++..|.++...++.+.++-.+....| |..+-+.|..+...-+-...
T Consensus 20 ~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~~~l-------------q~~~e~~i~~~~~~v~~~~~-- 84 (247)
T PF06705_consen 20 DLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESNKKL-------------QSKFEEQINNMQERVENQIS-- 84 (247)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH--
Confidence 34433 333445556677788888888888888777766554443 44555555544433222211
Q ss_pred hHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 003017 191 EDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRH 270 (857)
Q Consensus 191 e~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~h 270 (857)
.-...|..=|..|..|=..|... |.+++..+...+..--..|..+..++...+..+--.-.-.-...+.+|..
T Consensus 85 ----~~~~~~~~~l~~L~~ri~~L~~~---i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e 157 (247)
T PF06705_consen 85 ----EKQEQLQSRLDSLNDRIEALEEE---IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEE 157 (247)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234555666777776666543 45555555555544445666666777766666655544445566667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 003017 271 EQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQ 342 (857)
Q Consensus 271 Ers~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E 342 (857)
.=..+..++..|+..--..+.--+.+ ++..+.-+.+.=+.=+.+.|+.|++++..+..|.+
T Consensus 158 ~~~~l~~~i~~Ek~~Re~~~~~l~~~-----------le~~~~~~~~~~e~f~~~v~~Ei~~lk~~l~~e~~ 218 (247)
T PF06705_consen 158 EENRLQEKIEKEKNTRESKLSELRSE-----------LEEVKRRREKGDEQFQNFVLEEIAALKNALALESQ 218 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777766544443333333 33333333333333345677777777776665554
No 152
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=51.17 E-value=5.2e+02 Score=31.21 Aligned_cols=86 Identities=29% Similarity=0.311 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 003017 158 NEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEE 237 (857)
Q Consensus 158 teeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 237 (857)
..+=|.|--.||++||.=--.|++=.+.-+.|. |+|-+|=--|=.+|-=--.-..|.+++...|-.|++-.-+--+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999888888887 6899999888888866556667888899999999999999999
Q ss_pred HhHHHHHHHH
Q 003017 238 RLKKEECAMR 247 (857)
Q Consensus 238 rLK~Ek~~~r 247 (857)
+||.||..-.
T Consensus 482 lLkrEKe~~E 491 (527)
T PF15066_consen 482 LLKREKETRE 491 (527)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 153
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=50.34 E-value=6.1e+02 Score=31.77 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 003017 50 MRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV 99 (857)
Q Consensus 50 l~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~L 99 (857)
|++-+....+.|.|++..-..+.--|..|-..+..++-....|..|+..|
T Consensus 430 LraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 430 LRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666654444444455555555555555555555444
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.03 E-value=2.6e+02 Score=32.10 Aligned_cols=114 Identities=24% Similarity=0.334 Sum_probs=71.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Q 003017 39 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQ 118 (857)
Q Consensus 39 lE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~ 118 (857)
|.+-++++...+..-..-|.+--.+|..-=++|..||.-|+.+++-+-..=..+..+++.++++=+. .-..+.....
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~---~s~~V~~~t~ 301 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ---ASEGVSERTR 301 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHH
Confidence 4556677888888888889999999999999999999999999888877655555555555544333 3333333334
Q ss_pred HHHhhHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHhhh
Q 003017 119 KLIADKESLQILKVEIDQIESENAQQ--ELQIQEECQKL 155 (857)
Q Consensus 119 qL~~ekeel~~lK~elEK~~a~~e~q--~~qi~ee~e~L 155 (857)
.|-.=-++|...|.+++.=-+++.+- +-+|.++..+|
T Consensus 302 ~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kL 340 (359)
T PF10498_consen 302 ELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKL 340 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 44333444555555555443333332 33555554443
No 155
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=49.77 E-value=5.2e+02 Score=30.87 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=88.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH----------HH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Q 003017 186 LLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKI----------AD-EKKKLEKLQHSAEERLKKEECAMRDYVQREI 254 (857)
Q Consensus 186 LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I----------~e-Ere~lek~~~~E~erLK~Ek~~~r~~~krel 254 (857)
|-+-+.-|.++-.-.-.|.|.+|-|+.-++.|--++ ++ |-|-+..++..+.--|++|+..+--.|.++-
T Consensus 48 l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye~ee 127 (552)
T KOG2129|consen 48 LGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYEVEE 127 (552)
T ss_pred HHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhhhhh
Confidence 334444444444444456666666776666653221 22 3345566888888889999888877776654
Q ss_pred -----------HHHhhcHHHHHHHHHHHHHHH----HHHHHHHHHHHH------HHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003017 255 -----------EAIRLDKEAFEATMRHEQLVL----SEKAKNDRRKML------EEFEMQRMNQEAELLNRRDKMEKELQ 313 (857)
Q Consensus 255 -----------E~L~~ekEsF~~~M~hErs~~----~ek~q~Erad~l------~d~EmqkreLE~~~~~r~EE~E~~L~ 313 (857)
..|+.++=.|+...++|+--+ ..||..--++-+ .-+-..+-+||+-++..||-+=+.|-
T Consensus 128 e~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~Lw 207 (552)
T KOG2129|consen 128 EFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLW 207 (552)
T ss_pred hhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 556667777777777777333 333333222221 12223345689999999999999999
Q ss_pred HHHHHHHHHHHH
Q 003017 314 ERTRTFEEKRER 325 (857)
Q Consensus 314 EREk~FEeek~~ 325 (857)
-|.-.+|.++.-
T Consensus 208 KrmdkLe~ekr~ 219 (552)
T KOG2129|consen 208 KRMDKLEQEKRY 219 (552)
T ss_pred HHHHHHHHHHHH
Confidence 999988888753
No 156
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.59 E-value=7.4e+02 Score=32.53 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=20.8
Q ss_pred hHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHH
Q 003017 361 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 399 (857)
Q Consensus 361 ~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~ 399 (857)
.++.++.+-..++..+.+...-+.+++.-+.+....|+-
T Consensus 372 ~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~l~~~kr~~ 410 (1072)
T KOG0979|consen 372 MKEVLQKKSSKLRDSRQEIDAEQLKSQKLRDLENKKRKL 410 (1072)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555554443
No 157
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=49.35 E-value=1.6e+02 Score=35.56 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003017 86 KEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEE 151 (857)
Q Consensus 86 keKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee 151 (857)
++++....++.+.|- ....+.+-+++++.-+..=.+.=..|...+.++++++.++.+.+.+|...
T Consensus 174 k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~ 238 (555)
T TIGR03545 174 KAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSA 238 (555)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444443 23334444444444433322344456666666666666666666555543
No 158
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.20 E-value=4.2e+02 Score=29.59 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=102.1
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHH---------------HHHHHHHHHhhHHH--
Q 003017 39 LEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKE---------------KENDLAARLKSVKE-- 101 (857)
Q Consensus 39 lE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lke---------------KEkdl~~K~k~LKE-- 101 (857)
+-.++.++++++..=-..+.+-+.+|...++-|.+|..-|..+.|.+-. ==.||-+|+.++..
T Consensus 64 ~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv 143 (265)
T COG3883 64 IQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIV 143 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHH
Confidence 3355666667777667777788888888888888999989888887632 12466677766653
Q ss_pred -----HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 003017 102 -----REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 176 (857)
Q Consensus 102 -----kEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEI 176 (857)
-=+..+..++.|+..+..|....+.|.-+..+++.....|+.++....-..-.|+..+.. +..|+
T Consensus 144 ~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~----------~~~e~ 213 (265)
T COG3883 144 DADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS----------ALGEK 213 (265)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHH
Confidence 234567788888888899999999999999999999999888877665554444443332 22222
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH
Q 003017 177 ETYRHQQELLLKEHEDLQQDRE 198 (857)
Q Consensus 177 d~~R~Qke~LlkEae~Lk~eKe 198 (857)
.-+-.|+..-.+.+...+.+-.
T Consensus 214 a~l~~qka~a~a~a~~~a~~~~ 235 (265)
T COG3883 214 AALEEQKALAEAAAAEAAKQEA 235 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 2222566655555655555443
No 159
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=48.67 E-value=3.5e+02 Score=28.50 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 003017 242 EECAMRDYVQREIEAI 257 (857)
Q Consensus 242 Ek~~~r~~~krelE~L 257 (857)
.....|.++-+++-.+
T Consensus 141 ~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 141 QLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 160
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.15 E-value=5.4e+02 Score=30.53 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=36.1
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 003017 156 KINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE 217 (857)
Q Consensus 156 kiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KE 217 (857)
.++.++=..-.||..-+-.=.-..+.+...|.+..-.|...+...+.|=..|+....+...+
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q 197 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444433333334455666677777778888887777766666555554433
No 161
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=47.69 E-value=3e+02 Score=27.45 Aligned_cols=52 Identities=25% Similarity=0.236 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 003017 104 KFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKI 157 (857)
Q Consensus 104 ksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lki 157 (857)
..+...-+.|+..+.+|..+ ....++.+++-++.=|.++-.++..-+.+|+-
T Consensus 58 ~~~~~~~~~l~~~~~kl~~E--~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~ 109 (136)
T PF04871_consen 58 EELASEVKELEAEKEKLKEE--ARKEAQSELDDLLVLLGDLEEKRKKYKERLKE 109 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33344444455555554422 22456667777777777777777777777664
No 162
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.34 E-value=4.2e+02 Score=29.09 Aligned_cols=111 Identities=15% Similarity=0.304 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-HHHHHHHHHHhHHHHhHHHHHHHHHHHHH
Q 003017 174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD-EKKKLEKLQHSAEERLKKEECAMRDYVQR 252 (857)
Q Consensus 174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 252 (857)
+||+++-.|..++.+...++.+....||++=+.|--+=++-++.-...+. .+..|-..++.+-++++.+ ++...+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999988887776666666555543 3556677777777777554 55566666
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 253 EIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 290 (857)
Q Consensus 253 elE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~ 290 (857)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 4455555555555555555555555444
No 163
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.99 E-value=4.3e+02 Score=29.12 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHH
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQ 218 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa 218 (857)
+.-+..+...+..+...+.++...|..+...+..+...+...-..++..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l 174 (423)
T TIGR01843 125 PELIKGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQL 174 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555544444443333
No 164
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=46.61 E-value=3.8e+02 Score=28.40 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 243 ECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 290 (857)
Q Consensus 243 k~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~ 290 (857)
-...++.|+.-++.|..-+..|+..|.. =...|-.+..+|-+|+.++
T Consensus 169 ~~~a~~~Y~~~v~~l~~~~~~~~~~~~~-~~~~~Q~lEe~Ri~~lk~~ 215 (239)
T cd07647 169 AEEADSAYKSSIGCLEDARVEWESEHAT-ACQVFQNMEEERIKFLRNA 215 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999985 3444556666777777654
No 165
>PRK10869 recombination and repair protein; Provisional
Probab=46.30 E-value=6e+02 Score=30.57 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=47.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017 324 ERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 393 (857)
Q Consensus 324 ~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~ 393 (857)
+.-|..|+.|+-.-..-+++|-.-+..++.|-..+.-..+.++.=..++.+-=++|..+..+|-..|...
T Consensus 302 e~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~a 371 (553)
T PRK10869 302 EQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRY 371 (553)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888999999999999999888877655555544444444444555555555555443
No 166
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.06 E-value=8.3e+02 Score=32.11 Aligned_cols=99 Identities=26% Similarity=0.257 Sum_probs=56.9
Q ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHhhhhccHHHHHHHH
Q 003017 91 DLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEID----QIESENAQQELQIQEECQKLKINEEEKSELL 166 (857)
Q Consensus 91 dl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elE----K~~a~~e~q~~qi~ee~e~LkiteeER~E~l 166 (857)
+.+.+.++++.-=+.++.+.++|.....-+..-+++|.+.+.+.. +....+-+-..++.+-.++|+-+..+..
T Consensus 245 ~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~--- 321 (1072)
T KOG0979|consen 245 KHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVE--- 321 (1072)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 456777777777777777777777777777777777777544433 2233333334444444444444333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 167 RLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 167 rLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
+++...+.++.+.+..++.+...+..
T Consensus 322 ----~~~~~le~lk~~~~~rq~~i~~~~k~ 347 (1072)
T KOG0979|consen 322 ----EKKNKLESLKKAAEKRQKRIEKAKKM 347 (1072)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655555555555543
No 167
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=45.53 E-value=2.2e+02 Score=25.72 Aligned_cols=67 Identities=30% Similarity=0.419 Sum_probs=47.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 003017 134 IDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 210 (857)
Q Consensus 134 lEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 210 (857)
+++..++=.++..++.+|=++| ..-+.++-.-|.++|.+-..+.+....|+...+..+.+-+.|-++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekL----------Sk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKL----------SKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444 444677888899999999999999999998888888887776543
No 168
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.62 E-value=2.6e+02 Score=25.87 Aligned_cols=65 Identities=28% Similarity=0.513 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 003017 165 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 244 (857)
Q Consensus 165 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~ 244 (857)
+-.|+.+.++-||++- +|.-|+++|| ||...|+.|.-.....|++|++ |-+.||.|-.
T Consensus 6 ~ekLE~KiqqAvdTI~----LLQmEieELK--------------Eknn~l~~e~q~~q~~reaL~~----eneqlk~e~~ 63 (79)
T COG3074 6 FEKLEAKVQQAIDTIT----LLQMEIEELK--------------EKNNSLSQEVQNAQHQREALER----ENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHH--------------HHhhHhHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 3467889999999874 5555666655 5677777888777778877763 5667777766
Q ss_pred HHHHHHH
Q 003017 245 AMRDYVQ 251 (857)
Q Consensus 245 ~~r~~~k 251 (857)
+-++.+.
T Consensus 64 ~WQerlr 70 (79)
T COG3074 64 GWQERLR 70 (79)
T ss_pred HHHHHHH
Confidence 6555543
No 169
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=44.44 E-value=66 Score=34.28 Aligned_cols=72 Identities=22% Similarity=0.439 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHH
Q 003017 320 EEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKER 399 (857)
Q Consensus 320 Eeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~ 399 (857)
+.+-.+++..+-.....+.++|.++..|.+.|+.||+-+..+|+.......+--.. ..-.|-+|..+...
T Consensus 33 e~~~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~----------~e~~r~~fekekqq 102 (228)
T PRK06800 33 EEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKE----------IEAARQQFQKEQQE 102 (228)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 44455667777777778888888888888888888888888887666554433333 33456666666655
Q ss_pred HH
Q 003017 400 FL 401 (857)
Q Consensus 400 fl 401 (857)
.+
T Consensus 103 ~~ 104 (228)
T PRK06800 103 TA 104 (228)
T ss_pred HH
Confidence 43
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=43.07 E-value=3.4e+02 Score=28.91 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 003017 126 SLQILKVEIDQIESENAQ 143 (857)
Q Consensus 126 el~~lK~elEK~~a~~e~ 143 (857)
++..++.+++.+.+.+..
T Consensus 147 ~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444433333
No 171
>PRK10884 SH3 domain-containing protein; Provisional
Probab=42.46 E-value=3.5e+02 Score=28.82 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 003017 173 KQQIETYRHQQELLLKEHEDL 193 (857)
Q Consensus 173 KeEId~~R~Qke~LlkEae~L 193 (857)
++++...+.+-..|-++.+++
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 172
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=42.46 E-value=7e+02 Score=30.21 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHH
Q 003017 215 NKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE 255 (857)
Q Consensus 215 ~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE 255 (857)
.+|+-+++-+-.-....++.|.++.--|...+|...+-+-|
T Consensus 188 rqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeae 228 (630)
T KOG0742|consen 188 RQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAE 228 (630)
T ss_pred HHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444444444445566677777777777766666655
No 173
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=42.42 E-value=4.6e+02 Score=28.12 Aligned_cols=172 Identities=21% Similarity=0.301 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 110 EKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189 (857)
Q Consensus 110 EK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkE 189 (857)
-++|..+...|...-+-+....+-|---...+..+.+-+.++-+.-+..++|=.+ ||..+-.+=.+...|++.
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333333344444444444444555544332 333444444567778888
Q ss_pred HhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003017 190 HEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMR 269 (857)
Q Consensus 190 ae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 269 (857)
+-.|..+...+.++|+.|-+....|.-+...+...-.- |-.+..+++.++- ..++|-..|++|.+.--
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e-----------L~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~t 157 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE-----------LATEKATLQRQLC-EFESLICQRDAILSERT 157 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH-----------HHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 88888888888888888877766666665555443333 3335555555542 46888888888887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003017 270 HEQLVLSEKAKNDRRKMLEEFEMQRMNQEAEL 301 (857)
Q Consensus 270 hErs~~~ek~q~Erad~l~d~EmqkreLE~~~ 301 (857)
+--..+..-| -|-..+..++-+-+..||.-|
T Consensus 158 ~~i~eL~~~i-eEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 158 QQIEELKKTI-EEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5544444333 344456666777777777655
No 174
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.41 E-value=6.7e+02 Score=29.97 Aligned_cols=75 Identities=21% Similarity=0.291 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHH
Q 003017 302 LNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDEL 379 (857)
Q Consensus 302 ~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL 379 (857)
++.++.++..|.++-..+..--...++.|.-.++.+. +++-++++-.+=..+. +...|.+-..|..+-+.||+-+
T Consensus 113 dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k-~~~~l~~~~ekK~e~s--Le~eR~k~~~ql~~~~~~~e~~ 187 (438)
T COG4487 113 DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNK-NEERLKFENEKKLEES--LELEREKFEEQLHEANLDLEFK 187 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHhHHHHHHH
Confidence 5677777777777777777766777777766665443 3333332221111111 4444444444444444444443
No 175
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=41.72 E-value=3.2e+02 Score=28.76 Aligned_cols=85 Identities=27% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-ccHHHHHHHHHHHH---HHHHHHHHHH
Q 003017 105 FVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLK-INEEEKSELLRLQS---QLKQQIETYR 180 (857)
Q Consensus 105 sLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~Lk-iteeER~E~lrLqs---eLKeEId~~R 180 (857)
+|+....++-.....+.+.-.+-...+..++...+.++....++......++ .+++.-.|.++|++ .|+++|+.++
T Consensus 100 ~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003017 181 HQQELLLKE 189 (857)
Q Consensus 181 ~Qke~LlkE 189 (857)
++=....+.
T Consensus 180 ~~F~~~~aa 188 (190)
T PF05266_consen 180 LEFQSVAAA 188 (190)
T ss_pred HHHHHHhcC
No 176
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.59 E-value=3.4e+02 Score=26.42 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 003017 66 HREEKLERREQALDKKSDRVKEKENDLA 93 (857)
Q Consensus 66 h~Eekl~kREqaLe~k~~~lkeKEkdl~ 93 (857)
..+..+..--..|..+...+.+-+..|+
T Consensus 21 ~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 21 DAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555544
No 177
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=41.55 E-value=3.1e+02 Score=25.84 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhh
Q 003017 88 KENDLAARLKSVKEREKFVKAEEKKLELEKQKLIAD 123 (857)
Q Consensus 88 KEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~e 123 (857)
.+..|..|-.....++..+...++.|......|..+
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~ 47 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEED 47 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 178
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=41.30 E-value=7.7e+02 Score=30.39 Aligned_cols=125 Identities=24% Similarity=0.334 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--
Q 003017 128 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWE-- 205 (857)
Q Consensus 128 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE-- 205 (857)
.+|..+|.+.+--+.+....++.=-++|.-+. -=+.---|++-||.||-++- +|+-|.. =|-
T Consensus 4 RKLq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~sqkeK~e~DLKkEIKKLQ-----------RlRdQIK----tW~ss 67 (575)
T KOG2150|consen 4 RKLQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NVSQKEKLESDLKKEIKKLQ-----------RLRDQIK----TWQSS 67 (575)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHHHHHHH-----------HHHHHHH----hhhcc
Confidence 35667777777777777777777777777666 33455578999999998863 2333322 132
Q ss_pred -------hhHHhHHHHHHHHHHH-HHHHHHHHHHHHhHH-------HHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 003017 206 -------VLDEKRDEINKEQEKI-ADEKKKLEKLQHSAE-------ERLKKEECAMRDYVQREIEAIRLDKEAFEATM 268 (857)
Q Consensus 206 -------~LDEKR~el~KEa~~I-~eEre~lek~~~~E~-------erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M 268 (857)
.|=.-|.=|+..+++- +.||+.=+|-.-.|. |=--+||.++.+++.+.++.|.++=++|.+.|
T Consensus 68 ~dIKDK~~L~d~RrlIE~~MErfK~vEke~KtKa~SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~ 145 (575)
T KOG2150|consen 68 SDIKDKDSLLDNRRLIEQRMERFKAVEKEMKTKAFSKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEE 145 (575)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333221 223332222222221 22246889999999999999999999999933
No 179
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=41.01 E-value=2.8e+02 Score=25.14 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003017 266 ATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEK 310 (857)
Q Consensus 266 ~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~ 310 (857)
+.+..+=..+...+...+..|+..|+-........|......++.
T Consensus 42 ~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 42 AQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444443333
No 180
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=40.23 E-value=7.3e+02 Score=31.77 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 003017 193 LQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQ 272 (857)
Q Consensus 193 Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hEr 272 (857)
|+.|..--.+.-|+|--|.++|-|..+...+|..+|.+.++.=...|++- +.+|.-+...|+++=++-+.+|++=+
T Consensus 439 Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~----kq~~d~e~~rik~ev~eal~~~k~~q 514 (861)
T PF15254_consen 439 LQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLEN----KQQFDIETTRIKIEVEEALVNVKSLQ 514 (861)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445566677788888888888888888888888776655555443 45666677788888888888888644
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q 003017 273 LVLSEKAKNDRRKMLEEFEMQRMNQ 297 (857)
Q Consensus 273 s~~~ek~q~Erad~l~d~EmqkreL 297 (857)
..| ...|...+++.|.++-|+-
T Consensus 515 ~kL---e~sekEN~iL~itlrQrDa 536 (861)
T PF15254_consen 515 FKL---EASEKENQILGITLRQRDA 536 (861)
T ss_pred hhH---HHHHhhhhHhhhHHHHHHH
Confidence 333 3455556666666655443
No 181
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=39.92 E-value=6e+02 Score=28.70 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 003017 15 VEIQKLLDDQ 24 (857)
Q Consensus 15 ~eIQKLldeh 24 (857)
..++.|++.|
T Consensus 109 ~d~r~lm~~Q 118 (312)
T smart00787 109 PDVKLLMDKQ 118 (312)
T ss_pred HHHHHHHHHH
Confidence 4444554443
No 182
>PF14992 TMCO5: TMCO5 family
Probab=39.89 E-value=6e+02 Score=28.69 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 003017 32 QQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV 99 (857)
Q Consensus 32 k~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~L 99 (857)
.+.+|-|+....-.+++. +-.-.-.+.+|.++...|..-++-|..=+--+..+.+..+.++.+...+
T Consensus 34 iq~Le~Eit~~~~~~~~~-e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~ 100 (280)
T PF14992_consen 34 IQSLEREITKMDHIADRS-EEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNV 100 (280)
T ss_pred HHHHHHHHHHHccccCch-hHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCC
Confidence 344555555555544443 1112222556666655554444433333333333356666555555543
No 183
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=39.10 E-value=1.6e+02 Score=31.98 Aligned_cols=17 Identities=24% Similarity=0.603 Sum_probs=13.1
Q ss_pred HHHhhccccchhhhhHH
Q 003017 403 FVEKHTSCKNCGEMMRA 419 (857)
Q Consensus 403 ~vEklK~ckncg~~~~e 419 (857)
+-.++.+|.-||-+++-
T Consensus 186 ~~qkl~VCeVCGA~Ls~ 202 (254)
T PF03194_consen 186 QQQKLEVCEVCGAFLSV 202 (254)
T ss_pred cccCccchhhhhhHHhc
Confidence 44678999999976653
No 184
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.56 E-value=2e+02 Score=29.33 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEW 204 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW 204 (857)
..++++||+++..+-....+|.+.||.|-+.+.+|.
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346677777777777778889999999999888875
No 185
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.17 E-value=3.9e+02 Score=29.98 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 003017 68 EEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 147 (857)
Q Consensus 68 Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~q 147 (857)
...|..-...|..+--.|.++.++.+..+..+...-............+...+.....++...+.++++-++...-.+..
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P~L~~ 93 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEPALEE 93 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555444322222222222233344445555566666677777666666666555
Q ss_pred HHHHHhhh
Q 003017 148 IQEECQKL 155 (857)
Q Consensus 148 i~ee~e~L 155 (857)
...+-.+|
T Consensus 94 A~~al~~l 101 (344)
T PF12777_consen 94 AQEALKSL 101 (344)
T ss_dssp HHHHHHCS
T ss_pred HHHHHHhC
Confidence 55555554
No 186
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.63 E-value=3.8e+02 Score=29.15 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=15.9
Q ss_pred hHHHHhHHHHHHHHHHHHH
Q 003017 234 SAEERLKKEECAMRDYVQR 252 (857)
Q Consensus 234 ~E~erLK~Ek~~~r~~~kr 252 (857)
.|.|||..+-..+++++..
T Consensus 193 ~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 193 DEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 7899999998888888753
No 187
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=37.42 E-value=5.4e+02 Score=27.46 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH
Q 003017 162 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKI 221 (857)
Q Consensus 162 R~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I 221 (857)
.........+.-+.|+.+-.++..|..+...|..|.+..+..=..|..--+..+++...+
T Consensus 30 ~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L 89 (251)
T PF11932_consen 30 QQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASL 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666677777777777777777777666665554333333333333333333
No 188
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.41 E-value=6.2e+02 Score=30.71 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=52.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHH
Q 003017 10 YGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKE 89 (857)
Q Consensus 10 ~~rE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKE 89 (857)
--|-++-+|.+.. |+..| ....-.+.+.. -.+..--.|+...-.|.++|+||=-+|.-.-+-|.++--.|.-=|
T Consensus 340 ~~R~K~Q~q~~~~-~r~ri----~~i~e~v~eLq-k~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E 413 (508)
T KOG3091|consen 340 RQRLKVQDQEVKQ-HRIRI----NAIGERVTELQ-KHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE 413 (508)
T ss_pred HHHHHHHHHHHHH-HHHHH----HHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH
Confidence 3455556655443 33333 34455555555 567777889999999999999997777666665555555555555
Q ss_pred HHHHHHHhhH
Q 003017 90 NDLAARLKSV 99 (857)
Q Consensus 90 kdl~~K~k~L 99 (857)
..|..|+.+|
T Consensus 414 E~Lr~Kldtl 423 (508)
T KOG3091|consen 414 EELRAKLDTL 423 (508)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.25 E-value=1e+03 Score=30.73 Aligned_cols=89 Identities=25% Similarity=0.259 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHhhhHHhHHH
Q 003017 144 QELQIQEECQKLKINEEEKSELLRLQSQ---LKQQIETYRHQQELLLKEHEDL-------QQDREKFEKEWEVLDEKRDE 213 (857)
Q Consensus 144 q~~qi~ee~e~LkiteeER~E~lrLqse---LKeEId~~R~Qke~LlkEae~L-------k~eKekFE~EWE~LDEKR~e 213 (857)
-..|+.+...+ ..++-.-+.-+|++ ||++|...=+.-...-...+.+ -.+...-|.+.-.|-+|-..
T Consensus 790 ~qeqv~El~~~---l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~ 866 (970)
T KOG0946|consen 790 DQEQVIELLKN---LSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKF 866 (970)
T ss_pred hHHHHHHHHHh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhh
Confidence 34566666555 33444445555655 4556655544433333333333 34566677777778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 003017 214 INKEQEKIADEKKKLEKLQHSA 235 (857)
Q Consensus 214 l~KEa~~I~eEre~lek~~~~E 235 (857)
+.+.++..+|.+.+|+....+|
T Consensus 867 ~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 867 GNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred hhhHHHHHhhhhhhHHHhhcch
Confidence 8888888888888888555554
No 190
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=36.40 E-value=8.2e+02 Score=29.26 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHH
Q 003017 177 ETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEA 256 (857)
Q Consensus 177 d~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~ 256 (857)
..+++|.--|.+|.+-+++--..-|.|-- .|++|+-.|+++|-..+..- .---+=..-.++.+.++..++-.
T Consensus 30 s~~~aq~~~~~a~~~ai~a~~~~~E~~l~-------~Lq~e~~~l~e~~v~~~a~~-~~~t~~~~~~en~~~r~~~eir~ 101 (459)
T KOG0288|consen 30 SRLSAQLVILRAESRAIKAKLQEKELELN-------RLQEENTQLNEERVREEATE-KTLTVDVLIAENLRIRSLNEIRE 101 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666677777666665555543 34555555555554411100 00011123456788889999999
Q ss_pred HhhcHHHHHHHHH
Q 003017 257 IRLDKEAFEATMR 269 (857)
Q Consensus 257 L~~ekEsF~~~M~ 269 (857)
|+.++-+||+.|-
T Consensus 102 ~~~q~~e~~n~~~ 114 (459)
T KOG0288|consen 102 LREQKAEFENAEL 114 (459)
T ss_pred HHHhhhhhccchh
Confidence 9999999999986
No 191
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=36.29 E-value=5.7e+02 Score=27.39 Aligned_cols=53 Identities=26% Similarity=0.399 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH-HhHHH-HHHHHHHHHHhhhHHhHHHHHHH
Q 003017 165 LLRLQSQLKQQIE-TYRHQQELLLKE-HEDLQ-QDREKFEKEWEVLDEKRDEINKE 217 (857)
Q Consensus 165 ~lrLqseLKeEId-~~R~Qke~LlkE-ae~Lk-~eKekFE~EWE~LDEKR~el~KE 217 (857)
+..+..-|-+.|. .+--+.+.++++ .-.-| .-|.+|++.|+..|-+++.+.++
T Consensus 75 l~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~ 130 (215)
T cd07604 75 LAALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKE 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444442 344455566776 55555 88899999999998887776664
No 192
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=35.69 E-value=6.7e+02 Score=28.54 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Q 003017 168 LQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMR 247 (857)
Q Consensus 168 LqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r 247 (857)
|.++||+=.+.+.. =-.|+++||-|..|.-.+|=.=.=-|-|.|==+|.--.|=.-|...+..-+.+|-..=.-++
T Consensus 73 LkakLkes~~~l~d----RetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQ 148 (305)
T PF15290_consen 73 LKAKLKESENRLHD----RETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQ 148 (305)
T ss_pred HHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHH
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003017 248 DYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 303 (857)
Q Consensus 248 ~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~ 303 (857)
.||. ||-+|-+.||+-++.
T Consensus 149 KYFv-------------------------------------DINiQN~KLEsLLqs 167 (305)
T PF15290_consen 149 KYFV-------------------------------------DINIQNKKLESLLQS 167 (305)
T ss_pred HHHh-------------------------------------hhhhhHhHHHHHHHH
No 193
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=35.63 E-value=4.7e+02 Score=26.23 Aligned_cols=48 Identities=29% Similarity=0.508 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHH
Q 003017 168 LQSQLKQQIETYR---HQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEIN 215 (857)
Q Consensus 168 LqseLKeEId~~R---~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~ 215 (857)
....|++=.+++| ..-+.+..=+..|..++..+|.-++.|+.|-.+++
T Consensus 92 ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~k 142 (143)
T PF12718_consen 92 AEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEAK 142 (143)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhc
Confidence 3444555555554 33334444455566667777777777776655543
No 194
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=35.58 E-value=8.8e+02 Score=31.26 Aligned_cols=23 Identities=43% Similarity=0.342 Sum_probs=17.4
Q ss_pred HHHHHhhhhHHHHHHHHHhhhHH
Q 003017 25 RAILDAKQQEFELELEEKRKSIE 47 (857)
Q Consensus 25 ~a~L~~Kk~eFElElE~kRKs~d 47 (857)
-..|++|++.-..|++-.|++-+
T Consensus 909 ~~~l~sk~~q~~~e~er~rk~qE 931 (1259)
T KOG0163|consen 909 VKRLDSKEQQQIEELERLRKIQE 931 (1259)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHH
Confidence 34678888888888888887644
No 195
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=35.47 E-value=42 Score=43.75 Aligned_cols=17 Identities=35% Similarity=0.786 Sum_probs=14.3
Q ss_pred chHHHhhhhhhhccCCC
Q 003017 479 MSWLRKCTSKIFSISPI 495 (857)
Q Consensus 479 ~SwlrKCtskIFk~SP~ 495 (857)
-++++|||--|+.++|-
T Consensus 1488 ~~Lir~~T~aii~ldpL 1504 (3015)
T KOG0943|consen 1488 HCLIRKCTAAIILLDPL 1504 (3015)
T ss_pred HHHHHHHhHHhhhcccc
Confidence 36789999999999983
No 196
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=34.76 E-value=1.2e+03 Score=30.77 Aligned_cols=209 Identities=21% Similarity=0.205 Sum_probs=97.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 003017 74 REQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQ 153 (857)
Q Consensus 74 REqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e 153 (857)
-|..+......+++++..|..+=+.|+.....+... ...+..|. ++..++|..|+..-..++.-...+.+...
T Consensus 439 ~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~----~~~~~~l~---~~~~~~k~~L~~~~~el~~~~ee~~~~~~ 511 (1041)
T KOG0243|consen 439 EEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQ----LEIKELLK---EEKEKLKSKLQNKNKELESLKEELQQAKA 511 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555544444444433211 12222222 23334445555554455444444555444
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH-------HHH
Q 003017 154 KLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIAD-------EKK 226 (857)
Q Consensus 154 ~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~e-------Ere 226 (857)
.|+..+.=++.+..+...|-.. -..|....+..+..-..| |+-||.|-.....=+.-|-. .-.
T Consensus 512 ~l~~~e~ii~~~~~se~~l~~~-------a~~l~~~~~~s~~d~s~l---~~kld~~~~~~d~n~~~~~~~~~~l~~~~~ 581 (1041)
T KOG0243|consen 512 TLKEEEEIISQQEKSEEKLVDR-------ATKLRRSLEESQDDLSSL---FEKLDRKDRLDDDNQEVIDDFQSQLSENLS 581 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---HHHhhhhhccccccHHHHHHHhhhhhHHHH
Confidence 4554444444444444444333 333333444444444444 77777775544443333333 333
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 003017 227 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLN 303 (857)
Q Consensus 227 ~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~ 303 (857)
.|...+.+..-....-...|-.+...-+.++...=+-|+..|-|.|.-+.+=++..+. -+++.+..++.++..
T Consensus 582 ~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~~~r~~~~~~~e~~q~----~~~~~k~~~~s~l~~ 654 (1041)
T KOG0243|consen 582 TLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKISKDRDILSEVLESLQQ----LQEVLKKDSESCLEV 654 (1041)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhhhHHHHHHHHHHHHHH----HHHHHhhhHHHHHHH
Confidence 3333333333333333333444443344444445577777788888777776665543 233444444444443
No 197
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=34.39 E-value=1e+03 Score=29.88 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHh----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHH
Q 003017 70 KLERREQALDKKSDRVKEKENDLAARLKSVKEREKF----VKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQE 145 (857)
Q Consensus 70 kl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEks----LkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~ 145 (857)
.|..+-+.|..+.+.+.++++.|..|++.|-..=.. |-..|++.-.|...+. ..|..|+.-|++++.-+..|.
T Consensus 590 ~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~---~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 590 SLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMK---DQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777788888888898888888876544333 5555655544444333 346777888888888887777
Q ss_pred HHHH
Q 003017 146 LQIQ 149 (857)
Q Consensus 146 ~qi~ 149 (857)
.+|.
T Consensus 667 ~~i~ 670 (717)
T PF10168_consen 667 RQIE 670 (717)
T ss_pred HHHh
Confidence 7766
No 198
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.17 E-value=3e+02 Score=33.36 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=57.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Q 003017 97 KSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQI 176 (857)
Q Consensus 97 k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEI 176 (857)
...++-++.++..+........+|- .++++..||..++++....=.--..|.+ -..++-.|+.+.+...
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~----------~~~e~d~lk~e~~~~~ 232 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQK----------IKEEFDKLKKEGKADK 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666 4777788887777776521111111211 1225556677777777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 003017 177 ETYRHQQELLLKEHEDLQQDREKFE 201 (857)
Q Consensus 177 d~~R~Qke~LlkEae~Lk~eKekFE 201 (857)
+.++.=+..|..+.+.|+++-..++
T Consensus 233 ~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 233 QKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7777777777777777777665554
No 199
>COG5570 Uncharacterized small protein [Function unknown]
Probab=34.03 E-value=1.3e+02 Score=26.27 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=27.3
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 146 LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 182 (857)
Q Consensus 146 ~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Q 182 (857)
..|+++.+.=-.--..-.++-|-..-||+||+++++|
T Consensus 19 ~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 19 REIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666655555555677888888899999999986
No 200
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=34.01 E-value=6.4e+02 Score=27.28 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHH--HHHH------HHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHHHH
Q 003017 247 RDYVQREIEAIRLDKEAFEATMRH--EQLV------LSEKAKNDRRKMLEEFEMQRMN--------QEAELLNRRDKMEK 310 (857)
Q Consensus 247 r~~~krelE~L~~ekEsF~~~M~h--Ers~------~~ek~q~Erad~l~d~Emqkre--------LE~~~~~r~EE~E~ 310 (857)
=..|...+-++...-..|.+-+.- +.+. -+.-+--.=+++.+.|+.+.+. |-.-|+++.|+.-+
T Consensus 29 ~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k 108 (223)
T cd07605 29 GKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQK 108 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345666667777777777666530 0000 0011111123334444444433 34445555555555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh----
Q 003017 311 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL---- 386 (857)
Q Consensus 311 ~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL---- 386 (857)
++..=++-|..+.. ....+|+....++.++.+-.+-- ++.+. ...+..-|++++.....|
T Consensus 109 ~i~~~~K~y~~E~K-----------~~~~~l~K~~sel~Kl~KKs~~~--~~~k~---~~~l~~~~e~v~~k~~ele~~~ 172 (223)
T cd07605 109 VINKFEKDYKKEYK-----------QKREDLDKARSELKKLQKKSQKS--GTGKY---QEKLDQALEELNDKQKELEAFV 172 (223)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHccc--CCCcc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444433322 23445556666666666543311 01111 111222344444333333
Q ss_pred -hHhHHHHHHHHHHHHHHHHhhc
Q 003017 387 -YGDREQFKREKERFLEFVEKHT 408 (857)
Q Consensus 387 -k~QRE~~~~ERe~fl~~vEklK 408 (857)
.-.|+.+.-||.+|.-||+.|.
T Consensus 173 ~~~lr~al~EERrRyc~lv~~~c 195 (223)
T cd07605 173 SQGLRDALLEERRRYCFLVDKHC 195 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999984
No 201
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=33.71 E-value=6.2e+02 Score=33.17 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=6.7
Q ss_pred HHHHHHHhhcCCC
Q 003017 613 AVEDAKLFLGESP 625 (857)
Q Consensus 613 vvedAK~ilges~ 625 (857)
...-||.++-+.+
T Consensus 772 ~~~~~~~~~~~~~ 784 (1021)
T PTZ00266 772 LAKNAKEMYKEAV 784 (1021)
T ss_pred hhhhHHHHHhhhc
Confidence 4445555555553
No 202
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.37 E-value=4.1e+02 Score=24.85 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=38.3
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcH----HHHHHHHHHHHHHHHHHHHH
Q 003017 206 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK----EAFEATMRHEQLVLSEKAKN 281 (857)
Q Consensus 206 ~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek----EsF~~~M~hErs~~~ek~q~ 281 (857)
.||+++..+.........-+.........=...|.+=+......+..-.......+ ........+....+...|..
T Consensus 27 ~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~ 106 (132)
T PF00430_consen 27 FLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQ 106 (132)
T ss_dssp HCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666665555554444444333333322222222222111 22333333444455555555
Q ss_pred HHHHHHHHHHHh
Q 003017 282 DRRKMLEEFEMQ 293 (857)
Q Consensus 282 Erad~l~d~Emq 293 (857)
++.+++.++..+
T Consensus 107 e~~~a~~~l~~~ 118 (132)
T PF00430_consen 107 EKEKAKKELRQE 118 (132)
T ss_dssp HHHHHHHHHT--
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 203
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=33.19 E-value=7.5e+02 Score=27.86 Aligned_cols=142 Identities=17% Similarity=0.241 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003017 128 QILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 207 (857)
Q Consensus 128 ~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 207 (857)
..-..+++..++.-+++..-+.++.+.-..+..-.++|.|--++=+-+....+.+...-+.|.--+|+|-.+...|-+.+
T Consensus 78 ~~~q~~~e~~rv~~EE~Rkt~~~q~q~~~q~aqY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~ 157 (276)
T PF12037_consen 78 AQAQAEIERQRVEAEERRKTLQQQTQQKQQRAQYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQIL 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888888888888888887777777777777776666555555555556666667777888888888888777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHH
Q 003017 208 DEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKND 282 (857)
Q Consensus 208 DEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~E 282 (857)
-.+|..+..|++- +++ ++..++ ....+.-++.+-++.-+-++....++..+|.-|.+-|+.=
T Consensus 158 ~~r~~t~~~eaeL---~~e-------~~~~k~---~AEa~gra~~eReN~Di~l~~l~~ka~e~R~t~lesI~t~ 219 (276)
T PF12037_consen 158 AQRRQTEEEEAEL---RRE-------TERAKA---EAEAEGRAKEERENEDINLEQLRLKAEEERETVLESINTT 219 (276)
T ss_pred HHHHHhHHHHHHH---HHH-------HHHHHH---HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666555544431 111 111111 1222222333333333334556777777777777776643
No 204
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=33.05 E-value=9.4e+02 Score=28.96 Aligned_cols=98 Identities=22% Similarity=0.317 Sum_probs=65.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 131 KVEIDQIESENAQQELQIQEECQKLKIN----EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEV 206 (857)
Q Consensus 131 K~elEK~~a~~e~q~~qi~ee~e~Lkit----eeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~ 206 (857)
...|.+....+.++..++..+.+.|.-+ ..|-.. ...|.++|..+..+...+..........-..+..+|+.
T Consensus 312 ~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~----~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee 387 (569)
T PRK04778 312 SDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELES----VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE 387 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3334444444444444555555554433 444333 44667777788888888888888888888889999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003017 207 LDEKRDEINKEQEKIADEKKKLEKLQ 232 (857)
Q Consensus 207 LDEKR~el~KEa~~I~eEre~lek~~ 232 (857)
|.++.+++.++...|.+.=..|.+--
T Consensus 388 l~e~leeie~eq~ei~e~l~~Lrk~E 413 (569)
T PRK04778 388 ILKQLEEIEKEQEKLSEMLQGLRKDE 413 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888876655544433
No 205
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=33.03 E-value=5.3e+02 Score=26.05 Aligned_cols=112 Identities=21% Similarity=0.308 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHH
Q 003017 167 RLQSQLKQQIETY-RHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECA 245 (857)
Q Consensus 167 rLqseLKeEId~~-R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~ 245 (857)
.|+-.=|+.|+.+ ..|-.++-.++-.++.+-.+ .|--=+..|..+...+..+++++-.|...+.+++|.++..
T Consensus 30 ~l~r~qk~~iE~le~~q~~e~r~~~KriR~Eq~~------~l~~FkesLk~~~k~~k~e~ekl~~f~~qrk~~~k~~~~~ 103 (142)
T PF12474_consen 30 QLERQQKQQIEKLEQRQTQERRRLPKRIRAEQKK------RLAMFKESLKIEKKELKQEVEKLPQFKEQRKKRQKAEKEE 103 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccCchHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 3333344445443 34455555555555544332 1122256777777788899999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 246 MRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFE 291 (857)
Q Consensus 246 ~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~E 291 (857)
+........ ..|.+.....-.+-..+|++++-.+|-+.|
T Consensus 104 ~~~k~~~qe-------~ef~~~~~~~~~~~L~qi~~e~r~~l~e~E 142 (142)
T PF12474_consen 104 LEQKHEEQE-------QEFLAKQEENLEEALKQIQNEKRHELAEHE 142 (142)
T ss_pred HHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887776554 467777777777778899999888876543
No 206
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=32.41 E-value=1.1e+03 Score=29.36 Aligned_cols=86 Identities=15% Similarity=0.255 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HhHHHHHHhhhhhcHHHHHHH
Q 003017 307 KMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVN----REKLQEQQLGMRKDIDELDIL 382 (857)
Q Consensus 307 E~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~----ke~le~q~~em~kdIdeL~~l 382 (857)
+++-.|-.=...|+. |..|+......++-..+-|++-...-..|-.|+.++... -...++=+.+-......+..+
T Consensus 206 ~l~~~l~~~~e~le~-K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~ 284 (617)
T PF15070_consen 206 ELQEKLHNLKEKLEL-KSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMA 284 (617)
T ss_pred HHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333333333333433 234666666666666666666666666666666665432 111122223333344455555
Q ss_pred HHHhhHhHHHH
Q 003017 383 CRRLYGDREQF 393 (857)
Q Consensus 383 s~KLk~QRE~~ 393 (857)
.+.|+.-++.+
T Consensus 285 ~~ELq~~qe~L 295 (617)
T PF15070_consen 285 HQELQEAQEHL 295 (617)
T ss_pred HHHHHHHHHHH
Confidence 66666655444
No 207
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=32.38 E-value=2.8e+02 Score=27.63 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 104 KFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQK 154 (857)
Q Consensus 104 ksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~ 154 (857)
++|...++.+..+...|.++.+.|+.|+..+......+..+..++++-..-
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 455566667777778888889999999999988888888888887554433
No 208
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=31.38 E-value=2.7e+02 Score=29.90 Aligned_cols=49 Identities=27% Similarity=0.483 Sum_probs=30.8
Q ss_pred HhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHh
Q 003017 358 VKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 406 (857)
Q Consensus 358 i~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEk 406 (857)
+..+.+.|..+|..+++-...|..-.++|..-|.+|-+||+.|-..+..
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e 84 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQ 84 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666666666666666666666666555443
No 209
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=31.31 E-value=6.7e+02 Score=26.74 Aligned_cols=156 Identities=23% Similarity=0.316 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHH
Q 003017 165 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEEC 244 (857)
Q Consensus 165 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~ 244 (857)
+..+...|+.++..=|+..+.... .++..-.+.++--+.--.+|.+..+-+.. .|+..+.+-.+++.+...
T Consensus 14 ~~~f~~~le~e~~~Rr~~ee~r~~---~i~e~i~~Le~~l~~E~k~R~E~~~~lq~------~~e~~i~~~~~~v~~~~~ 84 (247)
T PF06705_consen 14 FSGFESDLENEKRQRREQEEQRFQ---DIKEQIQKLEKALEAEVKRRVESNKKLQS------KFEEQINNMQERVENQIS 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456677777777776666655544 34555566665555555555555544433 445555566666667777
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 245 AMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRE 324 (857)
Q Consensus 245 ~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~~r~EE~E~~L~EREk~FEeek~ 324 (857)
...+.++.-+++|...=......+..|+ .+...+|+-....|...|..=.+.++.+-..|..-=..=..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~-----------~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k 153 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEK-----------EERPQDIEELNQELVRELNELQEAFENERNEREEREENILK 153 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777666655555555555444 44444555555555555555555555555554433333333
Q ss_pred HHHhhhHHHHHHHHHH
Q 003017 325 RVLNDIAHLKEVAEGE 340 (857)
Q Consensus 325 ~EL~~In~lkE~a~~E 340 (857)
+--+.++++.+.+..|
T Consensus 154 rl~e~~~~l~~~i~~E 169 (247)
T PF06705_consen 154 RLEEEENRLQEKIEKE 169 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 210
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=31.00 E-value=4.4e+02 Score=26.43 Aligned_cols=70 Identities=13% Similarity=0.306 Sum_probs=42.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 003017 323 RERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 402 (857)
Q Consensus 323 k~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~ 402 (857)
|+.=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888999999998888887543332 33344444444444444444444555
Q ss_pred HHHhhc
Q 003017 403 FVEKHT 408 (857)
Q Consensus 403 ~vEklK 408 (857)
+++++.
T Consensus 82 ql~qv~ 87 (131)
T PF11068_consen 82 QLEQVQ 87 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 211
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.88 E-value=4.7e+02 Score=29.16 Aligned_cols=93 Identities=19% Similarity=0.316 Sum_probs=61.3
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHH----HHHHHHHHHHH
Q 003017 98 SVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEK----SELLRLQSQLK 173 (857)
Q Consensus 98 ~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER----~E~lrLqseLK 173 (857)
.+.+-|+.|+..=+.+. .++.+=+..+.++..|.-.+-+-|+..+..+...+.+|+.++.=| .||-.|+.+|+
T Consensus 159 e~~~iE~~l~~ai~~~~---~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~ 235 (267)
T PF10234_consen 159 ELNEIEKALKEAIKAVQ---QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQ 235 (267)
T ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44555666655443333 334444556666777777777777777777888888888887766 78999999999
Q ss_pred HHHHHHHHHH---HHHHHHHhHH
Q 003017 174 QQIETYRHQQ---ELLLKEHEDL 193 (857)
Q Consensus 174 eEId~~R~Qk---e~LlkEae~L 193 (857)
+.-+.|=..- ..|..+.++.
T Consensus 236 ~lY~~Y~~kfRNl~yLe~qle~~ 258 (267)
T PF10234_consen 236 KLYEIYVEKFRNLDYLEHQLEEY 258 (267)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 9877765442 3444444443
No 212
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.87 E-value=4.7e+02 Score=27.00 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=46.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 003017 114 ELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDL 193 (857)
Q Consensus 114 E~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~L 193 (857)
+.....|+.|-.++...+.++......+..+......... .....=.++..--..|+.+|..+.....++.+-.+.|
T Consensus 73 e~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~---~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l 149 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELS---EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEIL 149 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444444333322111 1111112222233456667777777777777777888
Q ss_pred HHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003017 194 QQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQ 232 (857)
Q Consensus 194 k~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~ 232 (857)
+-|-.-.-.+--.+.+|...|++|-..+ |.+|+
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~~L------v~Rwm 182 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENREL------VERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 8888888888889999999998886554 55665
No 213
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=30.83 E-value=8.3e+02 Score=27.65 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhH
Q 003017 311 ELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDR 390 (857)
Q Consensus 311 ~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QR 390 (857)
..+.|-.+-..+.++-|..++-....+=++|.+..-++..|-.||.....++=.+..+-+.=..+-.++..-- .|
T Consensus 38 ~~~~~~~~~~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v~~ri~~~eqE~~R~~~~~~Fl~~~----~q- 112 (289)
T PF05149_consen 38 AQRKRYAAQRKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEVERRIEMREQEAKRRTAAEEFLQAA----SQ- 112 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-
Confidence 4566777888888899999999999999999999999999888888777665444433333222222221110 00
Q ss_pred HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhcCC
Q 003017 391 EQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQ 426 (857)
Q Consensus 391 E~~~~ERe~fl~~vEklK~ckncg~~~~efvlsdLq 426 (857)
--.++..-++-+.-|.+|+.++.+||.+...
T Consensus 113 -----h~q~L~~~~~n~~~~~~~~~~~~~~V~~~~~ 143 (289)
T PF05149_consen 113 -----HKQRLRRCEENCDRALSCAESLEEYVQEGCP 143 (289)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112333344455678999999999855443
No 214
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=30.80 E-value=7.1e+02 Score=26.88 Aligned_cols=29 Identities=31% Similarity=0.587 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003017 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKE 203 (857)
Q Consensus 172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~E 203 (857)
|..+++.+|+ +|..|......+...|+.|
T Consensus 136 l~~e~erL~a---eL~~er~~~e~q~~~Fe~E 164 (202)
T PF06818_consen 136 LRREVERLRA---ELQRERQRREEQRSSFEQE 164 (202)
T ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Confidence 4555555554 3444445555555566655
No 215
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.76 E-value=9.4e+02 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 165 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 165 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
+......+++|+..+|.....|....|+||.+
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777777777776654
No 216
>PF03763 Remorin_C: Remorin, C-terminal region ; InterPro: IPR005516 Remorin binds both simple and complex galaturonides. The N-terminal region of remorin is proline rich, while the C-terminal region has been predicted to form a coiled-coil, that is expected to interact with other macromolecules, most likely DNA. Functional similarities between the behavior of the proteins and viral proteins involved in intercellular communication have been noted [].
Probab=30.63 E-value=1.8e+02 Score=28.30 Aligned_cols=52 Identities=29% Similarity=0.351 Sum_probs=46.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Q 003017 9 IYGLLQVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQ 60 (857)
Q Consensus 9 i~~rE~~eIQKLldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~r 60 (857)
=|.|+-.-|+--=..|++..++..+-.|..||.+|-..-+.|.+++..+.+.
T Consensus 23 r~~ree~~I~aWEn~qkaKaea~m~k~E~klEkkra~a~ek~~nkia~~~~~ 74 (111)
T PF03763_consen 23 RYEREEAKIQAWENLQKAKAEAEMRKIEEKLEKKRAKALEKMKNKIARAHKK 74 (111)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788899999999999999999999999999999999999999987654
No 217
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=30.17 E-value=6.2e+02 Score=31.72 Aligned_cols=119 Identities=14% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 78 LDKKSDRVKEKENDLAARLKSVKEREKFVKAE---EKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQK 154 (857)
Q Consensus 78 Le~k~~~lkeKEkdl~~K~k~LKEkEksLkae---EK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~ 154 (857)
++-|-+++.+.|-=|+.|...|--.|+.|+-+ .-.||.+|.-|+++--+|..--.-+||-+.+.|++.+.-....+.
T Consensus 134 VeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 134 VEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred HHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q ss_pred hhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 155 LKIN-----EEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 155 Lkit-----eeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
+... ..||..|-.-=---|-|+--+|-|..+--.|..+|...
T Consensus 214 vn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~ 260 (861)
T KOG1899|consen 214 VNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT 260 (861)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH
No 218
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.01 E-value=7e+02 Score=26.55 Aligned_cols=168 Identities=20% Similarity=0.310 Sum_probs=84.7
Q ss_pred HHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhhHHH
Q 003017 230 KLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSE----------KAKNDRRKMLEEFEMQRMNQEA 299 (857)
Q Consensus 230 k~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~e----------k~q~Erad~l~d~EmqkreLE~ 299 (857)
.|+..--..-...-..++++|..+...+..+|+...+.....-+.|-. .++.+- +.|.+|-..|-..+.
T Consensus 7 ~yL~~~~~e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eL-q~l~~~~~~k~~qe~ 85 (206)
T PF14988_consen 7 EYLKKKDEEKEKKIEKLWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQEL-QALKEFRRLKEQQER 85 (206)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 344444444445555566666666666665555555544433333332 233222 345677777777777
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHH---HH--hhhHHHHHHHHHHHHHH--HHH---HHHHHHHHHHHhhhH
Q 003017 300 ELLNRRDKMEK-------ELQERTRTFEEKRER---VL--NDIAHLKEVAEGEIQEI--KSE---RDQLEKEKHEVKVNR 362 (857)
Q Consensus 300 ~~~~r~EE~E~-------~L~EREk~FEeek~~---EL--~~In~lkE~a~~E~E~v--~lE---~~rLekEr~Ei~~~k 362 (857)
+|+.=++++.+ .+++=+-.|=.+|.+ ++ ..|..+-+.+.+++-.= .++ ..-+..--.-|...-
T Consensus 86 eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN 165 (206)
T PF14988_consen 86 EIQTLEEELEKMRAEHAEKLQEAESQFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKREN 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666655 333334444444432 33 35555556665553210 000 111222222333333
Q ss_pred hHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHH
Q 003017 363 EKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKE 398 (857)
Q Consensus 363 e~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe 398 (857)
.+|..+..-+-.....|..-+.+|.+|..++..++.
T Consensus 166 ~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 166 QQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666666666666666666654
No 219
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=29.86 E-value=1.7e+02 Score=26.32 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhhccccchhhhhHHH
Q 003017 363 EKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAF 420 (857)
Q Consensus 363 e~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~ckncg~~~~ef 420 (857)
.+|+.+.+.++.+.|.|.-.-.+...--..+..||+.|+.++-- .|..|..+.++.
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~--a~~e~~~Lk~E~ 56 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD--AYEENNKLKEEN 56 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
No 220
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.82 E-value=3e+02 Score=28.16 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 003017 122 ADKESLQILKVEIDQI 137 (857)
Q Consensus 122 ~ekeel~~lK~elEK~ 137 (857)
+..+++..+|.+|++.
T Consensus 158 ~~~~ei~~lk~el~~~ 173 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKK 173 (192)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3445555555555553
No 221
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.59 E-value=1.1e+03 Score=28.55 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003017 170 SQLKQQIETYRHQQELLLKEHEDLQQ 195 (857)
Q Consensus 170 seLKeEId~~R~Qke~LlkEae~Lk~ 195 (857)
..|+++|..+..+-..|..||..|-.
T Consensus 168 ~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 168 HTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777744
No 222
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=29.55 E-value=7.6e+02 Score=26.80 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 003017 173 KQQIETYRHQQELLLKEHEDLQQ 195 (857)
Q Consensus 173 KeEId~~R~Qke~LlkEae~Lk~ 195 (857)
-.+|..+......-.+|+..|+.
T Consensus 88 ~~~i~~l~ee~~~ke~Ea~~lq~ 110 (246)
T PF00769_consen 88 EAEIARLEEESERKEEEAEELQE 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 223
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.40 E-value=3.3e+02 Score=28.42 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVL 207 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 207 (857)
...|+.|+..++.+-+.|.+|.+.|.++...++.+.+.|
T Consensus 106 ~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999988876
No 224
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=29.37 E-value=7.8e+02 Score=30.62 Aligned_cols=7 Identities=43% Similarity=0.596 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 003017 268 MRHEQLV 274 (857)
Q Consensus 268 M~hErs~ 274 (857)
|+.||.+
T Consensus 670 mErERLE 676 (940)
T KOG4661|consen 670 MERERLE 676 (940)
T ss_pred HHHHHHH
Confidence 4444443
No 225
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=29.00 E-value=9.3e+02 Score=27.63 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 003017 162 KSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKF----EKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAE- 236 (857)
Q Consensus 162 R~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekF----E~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~- 236 (857)
|....++|.+--+|=+-+ .+-|+|=.+.|+++|+.+ |+|=|.|. ..|++-+..|-.||-.|+..+..|.
T Consensus 61 r~~sv~~~~~aEqEEE~i---sN~LlKkl~~l~keKe~L~~~~e~EEE~lt---n~L~rkl~qLr~EK~~lE~~Le~EqE 134 (310)
T PF09755_consen 61 REASVRIQAKAEQEEEFI---SNTLLKKLQQLKKEKETLALKYEQEEEFLT---NDLSRKLNQLRQEKVELENQLEQEQE 134 (310)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445555555555553322 356888899999999877 56666676 5688899999999999988887765
Q ss_pred ---HHhHHHHHHHHH---HHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 237 ---ERLKKEECAMRD---YVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 285 (857)
Q Consensus 237 ---erLK~Ek~~~r~---~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad 285 (857)
++|......|+. .++.+|+.|+.+|=...+.+++|+-.|..+++.-=.+
T Consensus 135 ~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~ 189 (310)
T PF09755_consen 135 YLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK 189 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888875 6788899999999999999999999999888765433
No 226
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=28.60 E-value=1.2e+03 Score=29.00 Aligned_cols=25 Identities=24% Similarity=0.322 Sum_probs=14.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 182 QQELLLKEHEDLQQDREKFEKEWEV 206 (857)
Q Consensus 182 Qke~LlkEae~Lk~eKekFE~EWE~ 206 (857)
-+..|.++.+..+.+....|++-..
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~ 328 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKA 328 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655443
No 227
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.50 E-value=1.3e+03 Score=28.73 Aligned_cols=130 Identities=17% Similarity=0.191 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----------HHHHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 003017 157 INEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR----------EKFEKEWEVLDEKRDEINKEQEKIADEKK 226 (857)
Q Consensus 157 iteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK----------ekFE~EWE~LDEKR~el~KEa~~I~eEre 226 (857)
.|+..=..|+-|--+|-+.|..+=-....+++.....++.. .+|+..-++++.|-..+.+.++....-++
T Consensus 55 ~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~ 134 (611)
T KOG2398|consen 55 STEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEKLKQDQSKKKAKDTYEVLCAKSNYLHRCQEKESLKEK 134 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 227 KLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEF 290 (857)
Q Consensus 227 ~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~ 290 (857)
.=. +.+....+.--..++..|++=++.|..-|+.|.++|. .=...|.-+...|-.++..+
T Consensus 135 ~k~---~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~-~~c~~fQ~~Ee~rl~~lk~~ 194 (611)
T KOG2398|consen 135 EKR---KKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMT-DLCLKFQEIEESRLSFLKEE 194 (611)
T ss_pred cch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
No 228
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=27.21 E-value=6.2e+02 Score=24.99 Aligned_cols=68 Identities=12% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 126 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 126 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
.+...+.+++--+++++..+..+-..+..| -.+|.++--.+..|.++-+..=+...+|.+..+++...
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL---~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~ 73 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGEL---AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRN 73 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444333333 33444444445555555544444445555555544443
No 229
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=27.18 E-value=1.5e+03 Score=29.54 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 127 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEV 206 (857)
Q Consensus 127 l~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~ 206 (857)
++++|--+...+..-.+=+.+.++-..+|.+.+.--.+..+.-..|-..|+.+-.+...+..=+++....-+.|+.|-..
T Consensus 426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~ 505 (980)
T KOG0980|consen 426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELAL 505 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444444445555555555555555555555555555555555555
Q ss_pred hHHhHHHHHHH
Q 003017 207 LDEKRDEINKE 217 (857)
Q Consensus 207 LDEKR~el~KE 217 (857)
|+.+=++|+..
T Consensus 506 l~~e~~~lq~~ 516 (980)
T KOG0980|consen 506 LLIELEELQRT 516 (980)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 230
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=26.94 E-value=1.4e+03 Score=28.90 Aligned_cols=68 Identities=13% Similarity=0.312 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHH-HHHHHHHHHHHHhHHHHhH
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKI-ADEKKKLEKLQHSAEERLK 240 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I-~eEre~lek~~~~E~erLK 240 (857)
+-+.++|++.++.+-.-|. ..|++-|.+....+-.+. +++..++--..+ ..|++.+...++.+.+.|+
T Consensus 634 Er~~~~EL~~~~~~l~~l~---~si~~lk~k~~~Q~~~i~-~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~ 702 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLK---ASIEQLKKKLDYQQRQIE-SQKSPKKKSIVLSESQKRTIKEILKQQGEEID 702 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh-ccccccCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666554443 334444455555554444 443333221111 2345555555544444443
No 231
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=26.78 E-value=1.3e+03 Score=28.78 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.5
Q ss_pred HHHhhhhhhhccCCCCcc
Q 003017 481 WLRKCTSKIFSISPIKKS 498 (857)
Q Consensus 481 wlrKCtskIFk~SP~K~~ 498 (857)
.+-+|...||..+-..+.
T Consensus 420 iipral~~lF~~~~~~~~ 437 (670)
T KOG0239|consen 420 IIPRALEKLFRTITSLKS 437 (670)
T ss_pred ccHHHHHHHHHHHHhhcc
Confidence 688999999988776555
No 232
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.70 E-value=4e+02 Score=24.68 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDR 197 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eK 197 (857)
--+|..+++.+|++...+.++.-.++..+
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~ 66 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAG 66 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCc
Confidence 45677888888888888888887777765
No 233
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=26.47 E-value=1.4e+02 Score=31.90 Aligned_cols=131 Identities=25% Similarity=0.278 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCCcccccccccchh-hhhhcCCCCCCCCCCCCCCcchhHHHHHHHHHHhhcCCCCCCCCCcccccccC
Q 003017 561 DEYAPSVDGHSYMDSKVEDVAEDSQQ-SELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHED 639 (857)
Q Consensus 561 ~~~~~s~~dqs~~ds~~~~~~edsq~-s~~k~g~r~~grr~k~~v~RTrSvkavvedAK~ilges~e~~~~~~~~~~~~e 639 (857)
+-|+.|.-|-+-|--|+....||.-+ .....|+.++| -+.+|-.-.+.+.+-|+.|-.|...+ ++
T Consensus 78 aAYdQSLPdfshIQmKvmgysED~rplLap~~gq~q~~-~sdgg~g~p~~~qawveaavvvHRgs-------------de 143 (224)
T PF15462_consen 78 AAYDQSLPDFSHIQMKVMGYSEDPRPLLAPEPGQPQPG-ASDGGEGGPRDAQAWVEAAVVVHRGS-------------DE 143 (224)
T ss_pred hhhhcCCCchhhheeeeeeccCCCCcccCCCcCCCccc-cCCCCCCCCcchhhhhhheeeeecCC-------------cc
Confidence 35777777888888888887888777 56677777775 33344445678899998888877776 55
Q ss_pred cCCCccccccccccccccCCCCCCcccccccC---CCCCCCCcCccccCCCcccccccccccCCCCCcccccccccc
Q 003017 640 SQGISSHTQEASNMAKKRRRPQTSKTTQSEKD---GADSEGYSDSVTAGGGRRKRHQTVATVSQTPGERRYNLRRHK 713 (857)
Q Consensus 640 s~g~ss~~~k~~~~~rKR~r~~~s~~~~seqd---~~dSEg~SdSvt~Gg~rrKRrq~vap~~qtpge~RYNLRR~k 713 (857)
.+|.-+.+.-.++-..=.+ +..--+|=|| .+-|||.|-.-+.-.++-+ -+|. |-|-.-||.|-|--
T Consensus 144 ~ege~~~tqs~p~p~~~pq---g~APLASfqddlD~gSsegsSp~pSPp~~eep----~~p~-~~p~a~r~~ld~f~ 212 (224)
T PF15462_consen 144 DEGERSPTQSRPGPPACPQ---GPAPLASFQDDLDMGSSEGSSPNPSPPEGEEP----HPPP-QEPWACRCQLDRFH 212 (224)
T ss_pred ccCccccccCCCCCCCCCC---CCcccccchhhccccccCCCCCCCCCCcccCC----CCCC-CCcccccCCccccc
Confidence 5665555442211111111 1222235554 4568888884443311222 2333 66777899987753
No 234
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=26.04 E-value=3e+02 Score=28.32 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.5
Q ss_pred HHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHH
Q 003017 366 QEQQLGMRKDIDELDILCRRLYGDREQFKREKERF 400 (857)
Q Consensus 366 e~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~f 400 (857)
-+-++.++.-|.+|+.+...|+.+|.+|..++...
T Consensus 72 lRkqAVvRrqi~eL~lq~~~i~ekR~~l~ke~~~~ 106 (147)
T PF02090_consen 72 LRKQAVVRRQIQELNLQEQQIQEKRRQLEKEKQEQ 106 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999988776543
No 235
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=25.89 E-value=1.5e+03 Score=29.66 Aligned_cols=70 Identities=24% Similarity=0.412 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhhhhccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHhhhHHhH
Q 003017 143 QQELQIQEECQKLKINEEEKSELLR-------LQSQLKQQIETYRHQQELLL----KEHEDLQQDREKFEKEWEVLDEKR 211 (857)
Q Consensus 143 ~q~~qi~ee~e~LkiteeER~E~lr-------LqseLKeEId~~R~Qke~Ll----kEae~Lk~eKekFE~EWE~LDEKR 211 (857)
.++.-+....-.|+..-.++..++. --.+|++||..+..|+-.|+ .|++.+++-|.+-++||-.|-.+.
T Consensus 548 qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~ 627 (913)
T KOG0244|consen 548 QKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQE 627 (913)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccc
Confidence 3333344444555555555554442 24689999999999988775 588999999999999999887654
Q ss_pred H
Q 003017 212 D 212 (857)
Q Consensus 212 ~ 212 (857)
-
T Consensus 628 r 628 (913)
T KOG0244|consen 628 R 628 (913)
T ss_pred h
Confidence 3
No 236
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=25.46 E-value=7.3e+02 Score=25.25 Aligned_cols=23 Identities=30% Similarity=0.383 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 003017 174 QQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 174 eEId~~R~Qke~LlkEae~Lk~e 196 (857)
.+++.||..+..|.++...++..
T Consensus 73 ~EL~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 73 LELDTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 237
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=25.28 E-value=5.1e+02 Score=23.40 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003017 269 RHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELL 302 (857)
Q Consensus 269 ~hErs~~~ek~q~Erad~l~d~EmqkreLE~~~~ 302 (857)
...+..+...+..++..-+..|..|...|+..+.
T Consensus 56 ~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~ 89 (127)
T smart00502 56 NKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQE 89 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555555444443
No 238
>PF13166 AAA_13: AAA domain
Probab=25.26 E-value=1.3e+03 Score=27.99 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=9.2
Q ss_pred chHHHhhhhhhhc
Q 003017 479 MSWLRKCTSKIFS 491 (857)
Q Consensus 479 ~SwlrKCtskIFk 491 (857)
+.=+++|...||+
T Consensus 700 ~~e~~~~~~~if~ 712 (712)
T PF13166_consen 700 IEEYKKVFRKIFE 712 (712)
T ss_pred HHHHHHHHHHHhC
Confidence 4567778788874
No 239
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=25.15 E-value=1.2e+03 Score=27.52 Aligned_cols=89 Identities=10% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH----HHHHHHHHH
Q 003017 205 EVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHE----QLVLSEKAK 280 (857)
Q Consensus 205 E~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE----rs~~~ek~q 280 (857)
..||+.+..|.+.+.....-+..+...+..=+..|.+=+.....-+..-...-...++.-++....| ...+...|+
T Consensus 28 ~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie 107 (445)
T PRK13428 28 RLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQ 107 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 003017 281 NDRRKMLEEFEMQ 293 (857)
Q Consensus 281 ~Erad~l~d~Emq 293 (857)
+||.++++++.-+
T Consensus 108 ~ek~~a~~elr~e 120 (445)
T PRK13428 108 LLRAQLTRQLRLE 120 (445)
T ss_pred HHHHHHHHHHHHH
No 240
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=25.07 E-value=1e+03 Score=26.79 Aligned_cols=133 Identities=23% Similarity=0.300 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHH
Q 003017 176 IETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIE 255 (857)
Q Consensus 176 Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE 255 (857)
|+.+-....+|+.+.-.+..+-....+.-..|.--+..++.|......-|.+|+.+-- | .++..-
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCR-E--------------LQk~Nk 88 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCR-E--------------LQKQNK 88 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------------HHHHHH
Confidence 4445555566667777777777777777888888888888888888888888877631 1 111111
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 256 AIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQ------RMNQEAELLNRRDKMEKELQERTRTFEEKR 323 (857)
Q Consensus 256 ~L~~ekEsF~~~M~hErs~~~ek~q~Erad~l~d~Emq------kreLE~~~~~r~EE~E~~L~EREk~FEeek 323 (857)
.|.-+-..-....+.-|.+|.++.+.-=.|+.-=++-+ -++-...|..+...+=....-||..|+.-.
T Consensus 89 ~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~ 162 (309)
T PF09728_consen 89 KLKEESKRRAREEEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLL 162 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111112233344555556666654444433333322 223445566666666666666666666543
No 241
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.98 E-value=9e+02 Score=26.13 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 003017 127 LQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEV 206 (857)
Q Consensus 127 l~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~ 206 (857)
+.....+|++-++......-.+.+-+++.++..++|.+-. -+|+.+. ..|+++.+.|+.+-.+|..==-.
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~---~el~kkl-------nslkk~~e~lr~el~k~~e~dpq 148 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERT---DELTKKL-------NSLKKILESLRWELAKIQETDPQ 148 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHH---HHHHHHH-------HHHHHHHHHHHHHHHHHhhcCHH
Confidence 4455667777788888888888889999999988887764 2333333 44556677777778887765555
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHHHH
Q 003017 207 LDEKRDEINKE----QEKIADEKKKLEKLQ 232 (857)
Q Consensus 207 LDEKR~el~KE----a~~I~eEre~lek~~ 232 (857)
.=+|.-+++|. +.+++..=..|--|+
T Consensus 149 v~~k~~~~~K~~~eaanrwtDnI~il~dy~ 178 (203)
T KOG3433|consen 149 VFEKKVHLEKTMAEAANRWTDNIFILIDYL 178 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 55666666666 444444444444443
No 242
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.67 E-value=84 Score=32.58 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=3.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 003017 175 QIETYRHQQELLLKEHEDLQQ 195 (857)
Q Consensus 175 EId~~R~Qke~LlkEae~Lk~ 195 (857)
|-+.+|..-+-|..|+-|||+
T Consensus 25 EKE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 25 EKENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHCH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 243
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=23.66 E-value=7.4e+02 Score=28.86 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003017 165 LLRLQSQLKQQIETYRHQQELLLKEHEDLQQD 196 (857)
Q Consensus 165 ~lrLqseLKeEId~~R~Qke~LlkEae~Lk~e 196 (857)
+-...-+|..+|+.+|++++.+.++.-.++..
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~ 64 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRK 64 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344567788888888888888888665443
No 244
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.51 E-value=1.6e+03 Score=28.52 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=98.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHH
Q 003017 35 FELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLE 114 (857)
Q Consensus 35 FElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE 114 (857)
--+||.+.|+-+|.-+--.-+.+-..+-++.....-|-.-+..|+.++..+.+.-+.+.++...|-+.=.+...-. +
T Consensus 152 k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a---~ 228 (716)
T KOG4593|consen 152 KLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNA---E 228 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h
Confidence 3456667777777777666666666677777777777777777777777777777766666666655433333222 3
Q ss_pred HHHHHHHh-hHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 115 LEKQKLIA-DKESLQILKV----EIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKE 189 (857)
Q Consensus 115 ~ek~qL~~-ekeel~~lK~----elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkE 189 (857)
.+.+...+ +.+.|...-. +++.+..++.+....+..-.++.....-=-.|+-.||++|++ .++|+.+..-|.-|
T Consensus 229 ~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~-~~~l~~~~~~LELe 307 (716)
T KOG4593|consen 229 LEQQLSLSEELEAINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR-LEKLQSTLLGLELE 307 (716)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHH
Confidence 33333333 3333333222 223333333333333333334444444444567788999975 78999999999999
Q ss_pred HhHHHHHHHHHH
Q 003017 190 HEDLQQDREKFE 201 (857)
Q Consensus 190 ae~Lk~eKekFE 201 (857)
-.+|+..-.+.|
T Consensus 308 N~~l~tkL~rwE 319 (716)
T KOG4593|consen 308 NEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHH
Confidence 999998887744
No 245
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=23.34 E-value=8.8e+02 Score=25.45 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHHHH
Q 003017 245 AMRDYVQREIEAIRLDKEAFEATMRH--EQ------LVLSEKAKNDRRKMLEEFEMQRMN--------QEAELLNRRDKM 308 (857)
Q Consensus 245 ~~r~~~krelE~L~~ekEsF~~~M~h--Er------s~~~ek~q~Erad~l~d~Emqkre--------LE~~~~~r~EE~ 308 (857)
.+=..|.+-+.++...-..|.+-|.- +. +--..-+-..=++..+.|+.+.+. |..-|+++.+.-
T Consensus 17 ~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d 96 (219)
T PF08397_consen 17 SLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHSELIQPLEKKLEED 96 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888888888888887752 00 001111112223333444443333 334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHhHHHHHHhhhhhcHHHHHHHHHHhh
Q 003017 309 EKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHE-VKVNREKLQEQQLGMRKDIDELDILCRRLY 387 (857)
Q Consensus 309 E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~E-i~~~ke~le~q~~em~kdIdeL~~ls~KLk 387 (857)
-+++..-++.|+.+-. ....+|+....+..+|.+-.+- -...+-.++.....+..-..+|..... .
T Consensus 97 ~k~i~~~~K~y~ke~k-----------~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~--~ 163 (219)
T PF08397_consen 97 KKYITQLEKDYEKEYK-----------RKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEK--Q 163 (219)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 5555555554443221 2244455555566666554432 011112222222222222222222111 2
Q ss_pred HhHHHHHHHHHHHHHHHHhhccccc
Q 003017 388 GDREQFKREKERFLEFVEKHTSCKN 412 (857)
Q Consensus 388 ~QRE~~~~ERe~fl~~vEklK~ckn 412 (857)
-.|+.+.-||.||.-||++|.+.-+
T Consensus 164 ~~r~al~EERrRyc~lv~~~~~~~~ 188 (219)
T PF08397_consen 164 SLREALLEERRRYCFLVEKHCSVVK 188 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3599999999999999999964433
No 246
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=22.75 E-value=2.8e+02 Score=28.39 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhH
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLD 208 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LD 208 (857)
...++..|+.|+.++.....|+++|.++-..+|.+-+.+.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~ 107 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHAL 107 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 5778888888888888888888888777777766655543
No 247
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=22.41 E-value=3.2e+02 Score=26.40 Aligned_cols=43 Identities=33% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 312 LQERTRTFEEK--RERVLNDIAHLKEVAEGEIQEIKSERDQLEKE 354 (857)
Q Consensus 312 L~EREk~FEee--k~~EL~~In~lkE~a~~E~E~v~lE~~rLekE 354 (857)
+-.||++.|+. ++.|-+.+..||+.+..++.+.+-++..|++.
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~ 98 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 248
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=22.14 E-value=7.7e+02 Score=24.35 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=5.6
Q ss_pred HHHHHHHHhHHHHH
Q 003017 183 QELLLKEHEDLQQD 196 (857)
Q Consensus 183 ke~LlkEae~Lk~e 196 (857)
-..-+.+|+.++.+
T Consensus 43 I~~~l~~A~~~~~e 56 (141)
T PRK08476 43 IKNDLEKVKTNSSD 56 (141)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444433
No 249
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=22.06 E-value=1.3e+03 Score=26.82 Aligned_cols=11 Identities=27% Similarity=0.392 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 003017 173 KQQIETYRHQQ 183 (857)
Q Consensus 173 KeEId~~R~Qk 183 (857)
.++|+..+.+.
T Consensus 290 ~~~l~~~~~~l 300 (457)
T TIGR01000 290 KQEITDLNQKL 300 (457)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 250
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.03 E-value=8e+02 Score=24.46 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=7.1
Q ss_pred hHHhHHHHHHHHHHHHHH
Q 003017 207 LDEKRDEINKEQEKIADE 224 (857)
Q Consensus 207 LDEKR~el~KEa~~I~eE 224 (857)
||+.+..+...+.....-
T Consensus 51 l~~R~~~I~~~l~~Ae~~ 68 (156)
T CHL00118 51 LDERKEYIRKNLTKASEI 68 (156)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444443333333
No 251
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.55 E-value=1.4e+03 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 003017 171 QLKQQIETYRHQQELLLKEHEDL 193 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkEae~L 193 (857)
++.+.++....+.+.+..+..++
T Consensus 270 ~~~~~l~~~~~~l~d~~~~l~~~ 292 (563)
T TIGR00634 270 ELAEQVGNALTEVEEATRELQNY 292 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 252
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=20.66 E-value=1.2e+03 Score=25.87 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=58.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhcH
Q 003017 182 QQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREIEAIRLDK 261 (857)
Q Consensus 182 Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 261 (857)
|+.+=-+|.++|+-|--=-=+.-+-++++.....|+++.|.- +|....++=.++=-+.+...-+-++.+|+.+ +-
T Consensus 37 q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~s---sL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V--~t 111 (230)
T PF03904_consen 37 QMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKS---SLEETTKDFIDKTEKVHNDFQDILQDELKDV--DT 111 (230)
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ch
Confidence 333345688999888776778888888888888888888865 6665555555555556666666777777776 44
Q ss_pred HHHHHHHHHH
Q 003017 262 EAFEATMRHE 271 (857)
Q Consensus 262 EsF~~~M~hE 271 (857)
+.|.+.|..+
T Consensus 112 de~k~~~~~e 121 (230)
T PF03904_consen 112 DELKNIAQNE 121 (230)
T ss_pred HHHHHHHHHH
Confidence 4666666544
No 253
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.64 E-value=1e+03 Score=25.14 Aligned_cols=13 Identities=38% Similarity=0.376 Sum_probs=5.4
Q ss_pred HhhHHHHHHhHHH
Q 003017 96 LKSVKEREKFVKA 108 (857)
Q Consensus 96 ~k~LKEkEksLka 108 (857)
.+.||+.=..|+.
T Consensus 29 IksLKeei~emkk 41 (201)
T PF13851_consen 29 IKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444333333
No 254
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.35 E-value=3e+02 Score=31.91 Aligned_cols=53 Identities=25% Similarity=0.459 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHhHHHHHHhhhhhcHHHHHH
Q 003017 329 DIAHLKEVAEGEIQEIKSERDQLEKEKHEVKV-------NREKLQEQQLGMRKDIDELDI 381 (857)
Q Consensus 329 ~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~-------~ke~le~q~~em~kdIdeL~~ 381 (857)
.+..++.+++.||+....++.-|-+=.++|+. .++.|++|...|+++||-|+.
T Consensus 215 ~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~ 274 (365)
T KOG2391|consen 215 VREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
No 255
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.26 E-value=1.1e+03 Score=25.55 Aligned_cols=107 Identities=16% Similarity=0.260 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHhHHHHHH
Q 003017 174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK--------KKLEKLQHSAEERLKKEECA 245 (857)
Q Consensus 174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEr--------e~lek~~~~E~erLK~Ek~~ 245 (857)
..|+.++.+-..+.......++.....-......=.+|...|+|...+-.-| +.|..+..++- -+......
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH-~~e~~e~~ 110 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDH-ENEQAEEE 110 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhh-hhHHHHHH
Confidence 4688888888888888888888888888888999999999999999886543 34555554443 33333333
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHH---HHHHHHHHHHHHH
Q 003017 246 MRDYVQREIEAIRLDKEAFEATM---RHEQLVLSEKAKN 281 (857)
Q Consensus 246 ~r~~~krelE~L~~ekEsF~~~M---~hErs~~~ek~q~ 281 (857)
+...+..=-..+......++..+ -||=..|+.||-+
T Consensus 111 ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr 149 (207)
T PF05546_consen 111 AKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRR 149 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333444433 2999999999965
No 256
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.08 E-value=1.6e+03 Score=27.23 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=12.6
Q ss_pred hhHHhHHHHHHHHHHHHH
Q 003017 206 VLDEKRDEINKEQEKIAD 223 (857)
Q Consensus 206 ~LDEKR~el~KEa~~I~e 223 (857)
..+-|..+.+.|...|+.
T Consensus 318 ~ae~K~~Eaq~er~~iAk 335 (489)
T PF05262_consen 318 EAEKKEEEAQQERKEIAK 335 (489)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 556677777777777775
Done!