Query 003017
Match_columns 857
No_of_seqs 34 out of 36
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 10:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.3 1E-06 3.5E-11 106.9 10.4 47 361-407 1117-1163(1184)
2 1i84_S Smooth muscle myosin he 98.2 4.6E-06 1.6E-10 101.3 11.0 49 335-383 1119-1167(1184)
3 3vkg_A Dynein heavy chain, cyt 96.2 1.1 3.7E-05 60.6 28.9 191 20-211 1900-2100(3245)
4 3na7_A HP0958; flagellar bioge 95.6 1.7 5.8E-05 44.5 21.4 90 174-281 97-186 (256)
5 2dfs_A Myosin-5A; myosin-V, in 95.4 0.29 1E-05 59.8 17.5 49 234-285 1030-1078(1080)
6 3na7_A HP0958; flagellar bioge 95.0 3.6 0.00012 42.1 22.4 59 172-230 102-171 (256)
7 3vkg_A Dynein heavy chain, cyt 94.8 5.2 0.00018 54.3 27.5 62 193-254 2040-2104(3245)
8 2dfs_A Myosin-5A; myosin-V, in 94.6 1.6 5.4E-05 53.5 20.6 24 171-194 1020-1043(1080)
9 3oja_B Anopheles plasmodium-re 93.6 0.69 2.4E-05 51.3 13.8 18 171-188 562-579 (597)
10 3oja_B Anopheles plasmodium-re 91.6 2.7 9.3E-05 46.6 15.2 70 125-197 463-532 (597)
11 2v71_A Nuclear distribution pr 88.3 23 0.00079 35.8 17.8 84 113-197 93-177 (189)
12 3oja_A Leucine-rich immune mol 84.7 16 0.00053 39.9 15.1 9 197-205 430-438 (487)
13 3q8t_A Beclin-1; autophagy, AT 78.5 13 0.00044 33.6 9.6 62 341-402 6-67 (96)
14 3oja_A Leucine-rich immune mol 78.2 36 0.0012 37.0 15.0 54 326-386 429-482 (487)
15 3ghg_A Fibrinogen alpha chain; 76.8 24 0.00084 40.6 13.3 136 15-174 49-187 (562)
16 3hnw_A Uncharacterized protein 73.3 23 0.00078 33.9 10.4 59 171-229 72-130 (138)
17 2fxo_A Myosin heavy chain, car 73.2 60 0.0021 30.3 17.9 42 169-210 78-119 (129)
18 3q8t_A Beclin-1; autophagy, AT 56.0 1.2E+02 0.0039 27.4 12.9 46 179-224 9-54 (96)
19 2i1j_A Moesin; FERM, coiled-co 43.9 31 0.001 39.6 6.5 105 126-248 343-447 (575)
20 3hnw_A Uncharacterized protein 40.1 1.5E+02 0.0052 28.2 9.7 11 90-100 35-45 (138)
21 2jee_A YIIU; FTSZ, septum, coi 39.8 2.1E+02 0.007 25.6 10.1 56 146-201 13-68 (81)
22 3bas_A Myosin heavy chain, str 38.8 2E+02 0.007 25.3 9.6 40 108-147 35-74 (89)
23 2efr_A General control protein 33.3 3.6E+02 0.012 26.4 15.8 75 65-142 62-136 (155)
24 3ghg_A Fibrinogen alpha chain; 32.9 2.7E+02 0.0093 32.3 11.6 39 164-202 114-152 (562)
25 1m1j_B Fibrinogen beta chain; 32.8 5.9E+02 0.02 28.9 15.5 41 71-111 91-131 (464)
26 3oc5_A Toxin coregulated pilus 31.8 11 0.00038 39.7 0.4 16 841-856 258-273 (318)
27 1deq_A Fibrinogen (alpha chain 31.5 3.8E+02 0.013 29.9 12.2 26 16-48 53-78 (390)
28 3i00_A HIP-I, huntingtin-inter 31.3 2.9E+02 0.01 25.9 9.9 63 126-198 16-78 (120)
29 3htk_A Structural maintenance 29.7 2.2E+02 0.0074 22.8 8.4 47 102-148 10-56 (60)
30 2jee_A YIIU; FTSZ, septum, coi 29.7 3E+02 0.01 24.5 10.8 59 166-228 9-67 (81)
31 2yy0_A C-MYC-binding protein; 29.7 37 0.0013 27.8 3.1 28 171-198 23-50 (53)
32 2xnx_M M protein, M1-BC1; cell 27.9 2.5E+02 0.0084 27.6 8.9 40 189-228 95-134 (146)
33 2k5c_A Uncharacterized protein 27.2 20 0.00068 32.4 1.1 39 376-415 20-59 (95)
34 3vem_A Helicase protein MOM1; 26.8 2.6E+02 0.0089 26.5 8.5 50 130-192 37-86 (115)
35 3m3w_A Pacsin3, protein kinase 26.8 3.7E+02 0.013 28.0 10.9 115 111-251 130-251 (320)
36 3ol1_A Vimentin; structural ge 24.9 4.1E+02 0.014 24.5 14.4 48 170-217 23-70 (119)
37 1gmj_A ATPase inhibitor; coile 24.7 3.6E+02 0.012 24.3 8.6 44 311-354 21-66 (84)
38 1l8d_A DNA double-strand break 24.6 3.6E+02 0.012 23.7 11.8 17 177-193 67-83 (112)
39 3mov_A Lamin-B1; LMNB1, B-type 23.8 3.6E+02 0.012 24.2 8.7 21 161-181 66-86 (95)
40 2xv5_A Lamin-A/C; structural p 23.7 2.8E+02 0.0095 24.1 7.6 22 160-181 33-54 (74)
41 3tnu_B Keratin, type II cytosk 23.1 4.5E+02 0.015 24.3 12.8 70 301-374 55-124 (129)
42 2xnx_M M protein, M1-BC1; cell 21.6 5.6E+02 0.019 25.1 10.0 21 119-139 74-94 (146)
43 4gfh_A DNA topoisomerase 2; to 21.1 1.2E+02 0.004 38.0 6.6 41 173-213 1126-1175(1177)
44 1x8y_A Lamin A/C; structural p 21.0 4.2E+02 0.014 23.2 8.4 72 104-181 6-77 (86)
45 3tnu_A Keratin, type I cytoske 20.5 5.1E+02 0.017 24.0 12.0 70 301-374 57-126 (131)
46 3nmd_A CGMP dependent protein 20.0 1.7E+02 0.0056 25.7 5.4 19 163-181 50-68 (72)
47 3mov_A Lamin-B1; LMNB1, B-type 20.0 4E+02 0.014 24.0 8.2 71 300-374 16-86 (95)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.33 E-value=1e-06 Score=106.91 Aligned_cols=47 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred hHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhh
Q 003017 361 NREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKH 407 (857)
Q Consensus 361 ~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl 407 (857)
....++.+..++...+++......+|..++..+..+...+...|+.+
T Consensus 1117 ~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel 1163 (1184)
T 1i84_S 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163 (1184)
T ss_dssp -----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443334444445444444444444444433
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.16 E-value=4.6e-06 Score=101.31 Aligned_cols=49 Identities=8% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHH
Q 003017 335 EVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILC 383 (857)
Q Consensus 335 E~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls 383 (857)
..+..+++++..++.....++..+...+..+..+..+++..|++|..-.
T Consensus 1119 ~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ieel~~vn 1167 (1184)
T 1i84_S 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167 (1184)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3344445555444444444555555566667777777777777776653
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.24 E-value=1.1 Score=60.57 Aligned_cols=191 Identities=14% Similarity=0.283 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhH
Q 003017 20 LLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSV 99 (857)
Q Consensus 20 Lldeh~a~L~~Kk~eFElElE~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~L 99 (857)
||.-+...|..|+.++.........=|+ .|..-...|..-.++|...+-.|.++.++-+..+..+.......+.+-...
T Consensus 1900 li~~y~~ll~~K~~el~~~~~rl~~GL~-KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1900 FINQVVLLINEKRDQLEEEQLHLNIGLK-KLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666555544433333332 223333444444455555555555555555555555444444444433334
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Q 003017 100 KEREKFVKAEEKKLELEKQKLIAD----------KESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQ 169 (857)
Q Consensus 100 KEkEksLkaeEK~lE~ek~qL~~e----------keel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLq 169 (857)
.+.++.+...++++...+...++| |+.+..+..++.+..+.+.+...+|.+-.++|...+++=.+...=.
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek 2058 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRET 2058 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333 2233344444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhH
Q 003017 170 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKR 211 (857)
Q Consensus 170 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR 211 (857)
..|+.+++.|.....--.+=..-|-.||.|....=+.|+...
T Consensus 2059 ~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2059 EQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 444444444444433333333444444444444444444433
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.57 E-value=1.7 Score=44.55 Aligned_cols=90 Identities=14% Similarity=0.113 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Q 003017 174 QQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQRE 253 (857)
Q Consensus 174 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 253 (857)
.||+....+...|.++.-++-...+..+.+++.+....+.+..+ -+.++.+.++.-..+..+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e 158 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET 158 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444444433333333 233445555555667777
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHH
Q 003017 254 IEAIRLDKEAFEATMRHEQLVLSEKAKN 281 (857)
Q Consensus 254 lE~L~~ekEsF~~~M~hErs~~~ek~q~ 281 (857)
+..|.-+|+.|...|...=...+++|..
T Consensus 159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 159 QQIIFKKKEDLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888888888776666666654
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.40 E-value=0.29 Score=59.83 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=29.5
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 234 SAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRK 285 (857)
Q Consensus 234 ~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hErs~~~ek~q~Erad 285 (857)
+|-..|++..+++...+..+-+.+. +.+-..|++++..+..-...||+.
T Consensus 1030 ~e~~~L~qq~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A 1030 EQNTLLKTEKEELNRRIHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555554544444433 567777777777777777777764
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.04 E-value=3.6 Score=42.13 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------H----hhhHHhHHHHHHHHHHHHHHHHHHHH
Q 003017 172 LKQQIETYRHQQELLLKEHEDLQQDREKFEKE-------W----EVLDEKRDEINKEQEKIADEKKKLEK 230 (857)
Q Consensus 172 LKeEId~~R~Qke~LlkEae~Lk~eKekFE~E-------W----E~LDEKR~el~KEa~~I~eEre~lek 230 (857)
++.+|..+......+|...+.++......+.. + ..+|..-+++.++...+..+|..|..
T Consensus 102 ~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 102 AKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555554444444333333 3 23455555556666666666665544
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.80 E-value=5.2 Score=54.33 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH---HHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Q 003017 193 LQQDREKFEKEWEVLDEKRDEINKEQEKIADEK---KKLEKLQHSAEERLKKEECAMRDYVQREI 254 (857)
Q Consensus 193 Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEr---e~lek~~~~E~erLK~Ek~~~r~~~krel 254 (857)
|.+..+....+++..-.+++.|+.+++....-= ++|-.=+.+|..|=...-..+..++..=.
T Consensus 2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2040 LEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence 333333333333444444444444444332211 12333355677776666666666655533
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.55 E-value=1.6 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q 003017 171 QLKQQIETYRHQQELLLKEHEDLQ 194 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkEae~Lk 194 (857)
.|.+.|..+..+...|....|+|.
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.57 E-value=0.69 Score=51.28 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003017 171 QLKQQIETYRHQQELLLK 188 (857)
Q Consensus 171 eLKeEId~~R~Qke~Llk 188 (857)
+||+|+...+.+...|+.
T Consensus 562 ~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.63 E-value=2.7 Score=46.56 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003017 125 ESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDR 197 (857)
Q Consensus 125 eel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eK 197 (857)
.++..++.++....+.+.....+|....+.+.+.+++..+. ...|++++.+.+.....+..+...++++.
T Consensus 463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS---SDNLNKVFTHLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCH---HHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 56666666666667777777777777777777655543332 24455555555555555544444444443
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.33 E-value=23 Score=35.78 Aligned_cols=84 Identities=20% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003017 113 LELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKS-ELLRLQSQLKQQIETYRHQQELLLKEHE 191 (857)
Q Consensus 113 lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~-E~lrLqseLKeEId~~R~Qke~LlkEae 191 (857)
|+.+..+|...++.+....-+||..-+.++.+.+.+..-.+.+...=+.=- ...-|+++|.+ =+.++..-+-|.-|+-
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~r 171 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEAR 171 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555444443333333222211111 12334555542 3344444445555666
Q ss_pred HHHHHH
Q 003017 192 DLQQDR 197 (857)
Q Consensus 192 ~Lk~eK 197 (857)
+||++-
T Consensus 172 DLk~El 177 (189)
T 2v71_A 172 DLRQEL 177 (189)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 666553
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.69 E-value=16 Score=39.86 Aligned_cols=9 Identities=11% Similarity=0.759 Sum_probs=3.6
Q ss_pred HHHHHHHHh
Q 003017 197 REKFEKEWE 205 (857)
Q Consensus 197 KekFE~EWE 205 (857)
+++|..+|+
T Consensus 430 ~~~~~~~~~ 438 (487)
T 3oja_A 430 QNNAIRDWD 438 (487)
T ss_dssp HHHHHHHHH
T ss_pred hhcchhhhh
Confidence 333444443
No 13
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=78.48 E-value=13 Score=33.63 Aligned_cols=62 Identities=16% Similarity=0.323 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHHHHHHHHHHH
Q 003017 341 IQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLE 402 (857)
Q Consensus 341 ~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~~~ERe~fl~ 402 (857)
++.+..++..|..|-..+...-+.|+.+.+.+...|..|...+..|..+-+.|.++++.|-.
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ 67 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKR 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455566666666666666667777778888888888888888898888888888888754
No 14
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.17 E-value=36 Score=36.98 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=24.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHh
Q 003017 326 VLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRL 386 (857)
Q Consensus 326 EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KL 386 (857)
|.++++..-+....++++++-|..|++++-. .++.+.++++...-.+.++...|
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 482 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNG-------EADLALASANATLQELVVREQNL 482 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhh-------hhhhhhHhcccHHHHHHHHHHHH
Confidence 3334444444444444444444444444433 33444455544444444444443
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.80 E-value=24 Score=40.55 Aligned_cols=136 Identities=14% Similarity=0.204 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH---HHHhhhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHhhhHHHHHHHH
Q 003017 15 VEIQKLLDDQRAILDAKQQEFELEL---EEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKEND 91 (857)
Q Consensus 15 ~eIQKLldeh~a~L~~Kk~eFElEl---E~kRKs~deel~~K~~~~e~rEvei~h~Eekl~kREqaLe~k~~~lkeKEkd 91 (857)
=+||-||+.|+--|..+..++=.++ .+.+++.+.=++++...|.++-......+..+.+--.+|+.+...|+++
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek--- 125 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK--- 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH---
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---
Confidence 4799999999998888876665544 4556667777777777777766666655555555544554444444332
Q ss_pred HHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH
Q 003017 92 LAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQ 171 (857)
Q Consensus 92 l~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqse 171 (857)
|..+..+|..=+..|..+-.+|+++-..|-.|+.--.--|.+-=.-+=+...|.-+|-+
T Consensus 126 ---------------------VdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQ 184 (562)
T 3ghg_A 126 ---------------------VIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQ 184 (562)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHH
Confidence 22222222222223333334444455555555444444444444444555666666665
Q ss_pred HHH
Q 003017 172 LKQ 174 (857)
Q Consensus 172 LKe 174 (857)
|.|
T Consensus 185 LeQ 187 (562)
T 3ghg_A 185 LEQ 187 (562)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.31 E-value=23 Score=33.90 Aligned_cols=59 Identities=22% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 003017 171 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLE 229 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~le 229 (857)
+++++++.++.+.+.+.+|..+||.+....-..-+.+...-++|+++...+..+.-.|+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777776666655555555555555555555555444443
No 17
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=73.15 E-value=60 Score=30.25 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHh
Q 003017 169 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEK 210 (857)
Q Consensus 169 qseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK 210 (857)
..+|-..|..+-.+.+........|...|.+.+.++..|-..
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~ 119 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555666666666666666666555443
No 18
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=56.01 E-value=1.2e+02 Score=27.40 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Q 003017 179 YRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADE 224 (857)
Q Consensus 179 ~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eE 224 (857)
+......|..|..+|-++...-|+|.+.||.=.+.++.|+..+..+
T Consensus 9 l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 9 LQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 3333334555555555555556666666666555555555555443
No 19
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.89 E-value=31 Score=39.60 Aligned_cols=105 Identities=18% Similarity=0.245 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 003017 126 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWE 205 (857)
Q Consensus 126 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE 205 (857)
.|..++.+..+...++......+..=-+++++.++|+..|...+.++.+++..++.+..-- +.|=+
T Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~--------------~~e~~ 408 (575)
T 2i1j_A 343 RLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNME--------------AAERQ 408 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHH
Confidence 4555667777777788888888888888999999999999998888888877766654433 33444
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Q 003017 206 VLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRD 248 (857)
Q Consensus 206 ~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~ 248 (857)
.|..+..+++-++.++.++.+.=+ .|-.+|+.+-..++.
T Consensus 409 ~l~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 409 KLEDEIRAKQEEVSRIQQEVELKD----SETRRLQEEVEDARR 447 (575)
T ss_dssp -------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 455555666666666666554422 244455555444443
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=40.15 E-value=1.5e+02 Score=28.25 Aligned_cols=11 Identities=0% Similarity=0.214 Sum_probs=5.4
Q ss_pred HHHHHHHhhHH
Q 003017 90 NDLAARLKSVK 100 (857)
Q Consensus 90 kdl~~K~k~LK 100 (857)
..|+.|+..++
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34455555544
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=39.84 E-value=2.1e+02 Score=25.60 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 003017 146 LQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFE 201 (857)
Q Consensus 146 ~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE 201 (857)
.+|.++.+.+..++-|=.|+-.--..|.++.+.+|.....|..|...|+++...|.
T Consensus 13 ~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 13 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555666666666666666666666666666554
No 22
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.76 E-value=2e+02 Score=25.27 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHH
Q 003017 108 AEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQ 147 (857)
Q Consensus 108 aeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~q 147 (857)
+..+.|+....+|..++..|..--++++-..+.+..++.+
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555555555555555544434444444444443333
No 23
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.32 E-value=3.6e+02 Score=26.45 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH
Q 003017 65 SHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENA 142 (857)
Q Consensus 65 ~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e 142 (857)
...+++-++|+..++.+.+.|.++=++.+.+-.. -|.++.-.++.|..--..|...|+....+..+|......+.
T Consensus 62 E~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~---AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~ 136 (155)
T 2efr_A 62 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEF---AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVE 136 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444444322 24445555555555555555555555555555555444443
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=32.85 E-value=2.7e+02 Score=32.28 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003017 164 ELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEK 202 (857)
Q Consensus 164 E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~ 202 (857)
||-+-..-||++|+.-=.+...|..=++++..+.+|.|.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666665556667777777777776666665
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.82 E-value=5.9e+02 Score=28.86 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHhHHHHHH
Q 003017 71 LERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEK 111 (857)
Q Consensus 71 l~kREqaLe~k~~~lkeKEkdl~~K~k~LKEkEksLkaeEK 111 (857)
|.+=+.-++..+..|+..-..|..+....++..+.|+..-+
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk 131 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLV 131 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 34444445555555555555555555555555555554443
No 26
>3oc5_A Toxin coregulated pilus biosynthesis protein F; multidomain protein, immunoglobulin-like (IG-like) fold, CEL adhesion; 2.40A {Vibrio cholerae}
Probab=31.85 E-value=11 Score=39.73 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=12.6
Q ss_pred CCCCcccccccccccc
Q 003017 841 HPGEASIGKKLWNFFT 856 (857)
Q Consensus 841 hPGevSIGKKLW~FFT 856 (857)
||-+.+.|||||+|.|
T Consensus 258 h~s~n~~Gk~i~~~st 273 (318)
T 3oc5_A 258 QPSNNLTGKKLYNVST 273 (318)
T ss_dssp CC---CCSEEEEEEEC
T ss_pred ccccCCCccceEEEec
Confidence 9999999999999987
No 27
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=31.52 E-value=3.8e+02 Score=29.90 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Q 003017 16 EIQKLLDDQRAILDAKQQEFELELEEKRKSIEE 48 (857)
Q Consensus 16 eIQKLldeh~a~L~~Kk~eFElElE~kRKs~de 48 (857)
+||.+|++|+ ++|.--+++.+..|++
T Consensus 53 rLqg~Ldk~e-------r~~~~rIe~L~~~L~~ 78 (390)
T 1deq_A 53 RMKGLIDEVD-------QDFTSRINKLRDSLFN 78 (390)
T ss_pred hHHHHHHHhh-------hhHHHHHHHHHHHHHH
Confidence 5899999999 4455555555555443
No 28
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.25 E-value=2.9e+02 Score=25.91 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003017 126 SLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQQDRE 198 (857)
Q Consensus 126 el~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKe 198 (857)
.|..|+.+|+.++..++.=+.........|+ .-. ++|.-|++..|+++...+-|.+.|+.+.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~------~~i----~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLK------GHV----SELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666543333222222221 111 35666778888888888888888887665
No 29
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.73 E-value=2.2e+02 Score=22.82 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Q 003017 102 REKFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQI 148 (857)
Q Consensus 102 kEksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi 148 (857)
.+..+....-.+...+..+.+.+..+..+..+|++++.++..-+.+|
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444334455566666667777777777777777776665555
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.72 E-value=3e+02 Score=24.53 Aligned_cols=59 Identities=22% Similarity=0.455 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 003017 166 LRLQSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKL 228 (857)
Q Consensus 166 lrLqseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~l 228 (857)
..|+.+..+=||++ .+|.-|.++||.+......+=+.+-.-|+.|..|...+.+|+..+
T Consensus 9 eqLE~KIq~avdtI----~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 9 EKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 45677777777765 456667777777777666666666666666666665555555443
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.72 E-value=37 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 003017 171 QLKQQIETYRHQQELLLKEHEDLQQDRE 198 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkEae~Lk~eKe 198 (857)
.||.|++.+|.+-..|.++.++|+...+
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888888888888888877544
No 32
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=27.88 E-value=2.5e+02 Score=27.58 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=10.6
Q ss_pred HHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 003017 189 EHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKL 228 (857)
Q Consensus 189 Eae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~l 228 (857)
+...|.++..+.+.+=..+|--|.-|..++.---+.+..+
T Consensus 95 ~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 95 EKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHHHHGGGTTTC---------------------
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666665666666666655554444444433
No 33
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=27.18 E-value=20 Score=32.41 Aligned_cols=39 Identities=33% Similarity=0.455 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHHhh-ccccchhh
Q 003017 376 IDELDILCRRLYGDREQFKREKERFLEFVEKH-TSCKNCGE 415 (857)
Q Consensus 376 IdeL~~ls~KLk~QRE~~~~ERe~fl~~vEkl-K~ckncg~ 415 (857)
-.+|..|-=.|.+-++.| +||+.|+..++.. -+|..||+
T Consensus 20 W~eLIeQML~~en~~ei~-kDr~~Fl~~~e~F~FkCP~CgE 59 (95)
T 2k5c_A 20 WEELIEEMLIIENFEEIV-KDRERFLAQVEEFVFKCPVCGE 59 (95)
T ss_dssp HHHHHHHSTTCSTHHHHT-TCHHHHHHHHHHSEEECTTTCC
T ss_pred HHHHHHHHHhhccHHHHH-hhHHHHHHHHHHHhhcCCCccH
Confidence 345555555566666654 7999999999886 47999994
No 34
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.84 E-value=2.6e+02 Score=26.45 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=35.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 003017 130 LKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHED 192 (857)
Q Consensus 130 lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~Qke~LlkEae~ 192 (857)
|+-||++++-.. ++..++++++ -+.|++++.+||+++|.--..++.|+|-
T Consensus 37 L~~ELeRLr~~~-d~~~K~HE~k------------klqLkse~e~E~ae~k~KYD~~lqe~es 86 (115)
T 3vem_A 37 FLHELEKLRRES-ENSKKTFEEK------------KSILKAELERKMAEVQAEFRRKFHEVEA 86 (115)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555433 3444555544 5678999999999999999999988873
No 35
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=26.79 E-value=3.7e+02 Score=27.96 Aligned_cols=115 Identities=14% Similarity=0.116 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHH----HHHHHHHHH---HHHHHHHHHHHHH
Q 003017 111 KKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEE----KSELLRLQS---QLKQQIETYRHQQ 183 (857)
Q Consensus 111 K~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeE----R~E~lrLqs---eLKeEId~~R~Qk 183 (857)
|+++..-..+++. +...-.+++|++.......+.+..++......+.+ ..+.-.|+. +..+++++.+..-
T Consensus 130 K~~~~~~~k~qk~---~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~~a~~~Y 206 (320)
T 3m3w_A 130 RAAEDGFRKAQKP---WLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQY 206 (320)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433334432 33334467777777777666655554433221111 111222332 2344555555555
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH
Q 003017 184 ELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQ 251 (857)
Q Consensus 184 e~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~k 251 (857)
...+..+... +..|+.+| ...|..|+.-|++||..=++.|..|..
T Consensus 207 ~~~l~~~n~~---~~~y~~~~--------------------~~~~~~~Q~lEe~Ri~~lk~~l~~~~~ 251 (320)
T 3m3w_A 207 EQTLAELNRY---TPRYMEDM--------------------EQAFESCQAAERQRLLFFKDVLLTLHQ 251 (320)
T ss_dssp HHHHHHHHHH---HHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh---hHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444 45688888 367888999999999999999988764
No 36
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.92 E-value=4.1e+02 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHH
Q 003017 170 SQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKE 217 (857)
Q Consensus 170 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KE 217 (857)
..|+.+|+.+-..+--|..|.+.++..-+.|-.-||.---+|..++.+
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~d 70 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENT 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356666666666666777777777777666666666544555555443
No 37
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=24.70 E-value=3.6e+02 Score=24.28 Aligned_cols=44 Identities=34% Similarity=0.471 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 311 ELQERTRTFEEK--RERVLNDIAHLKEVAEGEIQEIKSERDQLEKE 354 (857)
Q Consensus 311 ~L~EREk~FEee--k~~EL~~In~lkE~a~~E~E~v~lE~~rLekE 354 (857)
.+-.||.+-|+. +..+-+.+..||+.+..+|.+-.-++.+|+++
T Consensus 21 aFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~ 66 (84)
T 1gmj_A 21 AFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKE 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888 88888888889988877777777676666654
No 38
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.61 E-value=3.6e+02 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHhHH
Q 003017 177 ETYRHQQELLLKEHEDL 193 (857)
Q Consensus 177 d~~R~Qke~LlkEae~L 193 (857)
+.+..+...|..+...|
T Consensus 67 ~~~~~~l~~l~~~i~~l 83 (112)
T 1l8d_A 67 SKYHLDLNNSKNTLAKL 83 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 39
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=23.79 E-value=3.6e+02 Score=24.23 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003017 161 EKSELLRLQSQLKQQIETYRH 181 (857)
Q Consensus 161 ER~E~lrLqseLKeEId~~R~ 181 (857)
|-.+++-..+.|--||..||.
T Consensus 66 EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 66 DYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888899999985
No 40
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=23.67 E-value=2.8e+02 Score=24.07 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003017 160 EEKSELLRLQSQLKQQIETYRH 181 (857)
Q Consensus 160 eER~E~lrLqseLKeEId~~R~ 181 (857)
-|-.+++-..+.|--||..||.
T Consensus 33 ~EYq~LlniKl~Le~EIatYRk 54 (74)
T 2xv5_A 33 DEYQELLDIKLALDMEIHAYRK 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888899999999995
No 41
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.09 E-value=4.5e+02 Score=24.25 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhh
Q 003017 301 LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 374 (857)
Q Consensus 301 ~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~k 374 (857)
+.+....+|..|.+=+..|+ .++..++..-.-...++.+++.++.+.-.|-+++---|=.|+-+.+--|+
T Consensus 55 l~~~~~~LE~~l~e~e~~~~----~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRk 124 (129)
T 3tnu_B 55 VKKQCANLQNAIADAEQRGE----LALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRK 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666664 45667777777778889999999999989988887778888887776554
No 42
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=21.64 E-value=5.6e+02 Score=25.09 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=9.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHh
Q 003017 119 KLIADKESLQILKVEIDQIES 139 (857)
Q Consensus 119 qL~~ekeel~~lK~elEK~~a 139 (857)
.|..-++.+..+..+|.++.+
T Consensus 74 dleasr~akk~~ea~la~l~~ 94 (146)
T 2xnx_M 74 EQEINRNLLGNAKLELDQLSS 94 (146)
T ss_dssp HHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHh
Confidence 344444444444444444433
No 43
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=21.05 E-value=1.2e+02 Score=38.01 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHhhhHHhHHH
Q 003017 173 KQQIETYRHQQELLLKEHEDLQ---------QDREKFEKEWEVLDEKRDE 213 (857)
Q Consensus 173 KeEId~~R~Qke~LlkEae~Lk---------~eKekFE~EWE~LDEKR~e 213 (857)
++|+++++.+...|++|.++|+ .+...|+++|+...++.++
T Consensus 1126 ~ee~ekL~~E~~e~~~ei~~L~~~s~~~lw~~DLd~~~~~~~~~~~~~~e 1175 (1177)
T 4gfh_A 1126 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAE 1175 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555555555555554 5567788888877776654
No 44
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.01 E-value=4.2e+02 Score=23.17 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 003017 104 KFVKAEEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRH 181 (857)
Q Consensus 104 ksLkaeEK~lE~ek~qL~~ekeel~~lK~elEK~~a~~e~q~~qi~ee~e~LkiteeER~E~lrLqseLKeEId~~R~ 181 (857)
.+|++.-..|+.....+.. .+..+++.+...+..-..++.+-+..+.----|-.+++-..+.|--||..||.
T Consensus 6 e~L~~q~~~Le~~l~e~E~------~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 6 SQLQCQLAAKEAKLRDLED------SLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp ------CTTHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.54 E-value=5.1e+02 Score=23.97 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhh
Q 003017 301 LLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 374 (857)
Q Consensus 301 ~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~k 374 (857)
+.+....+|..|.+=+..|+ .++..++..-.-...++.+++.++.+.-.|-+++---|=.|+-+.+--|+
T Consensus 57 l~~~~~sLE~~l~e~e~~~~----~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRk 126 (131)
T 3tnu_A 57 QLSMKASLENSLEETKGRYC----MQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRR 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777766665554 45667777777788889999999999988988887778888887766554
No 46
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=20.02 E-value=1.7e+02 Score=25.72 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003017 163 SELLRLQSQLKQQIETYRH 181 (857)
Q Consensus 163 ~E~lrLqseLKeEId~~R~ 181 (857)
.++-.+=.+|+-++|+||+
T Consensus 50 ~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 50 DQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3333334467777777753
No 47
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=20.01 E-value=4e+02 Score=23.97 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhhhhh
Q 003017 300 ELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 374 (857)
Q Consensus 300 ~~~~r~EE~E~~L~EREk~FEeek~~EL~~In~lkE~a~~E~E~v~lE~~rLekEr~Ei~~~ke~le~q~~em~k 374 (857)
.+++....+|+.|++=+..|.. ++..++....-...++.+++.++.+.-.|-+++---|-.|+-+.+--++
T Consensus 16 ~Lq~~~~~LE~~l~e~E~~~~~----e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 16 QGQKESRACLERIQELEDLLAK----EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp --CCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667766666654 4555666666678888889888888888888877777788877765554
Done!