Query 003017
Match_columns 857
No_of_seqs 34 out of 36
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 10:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003017.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003017hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f5na1 a.114.1.1 (A:284-583) 79.2 25 0.0018 32.6 18.7 16 194-209 175-190 (300)
2 d1f5na1 a.114.1.1 (A:284-583) 70.6 41 0.003 31.0 21.8 32 176-207 206-237 (300)
3 d2ap3a1 a.24.27.1 (A:12-196) H 68.9 28 0.002 28.4 19.4 55 171-225 106-160 (185)
4 d1qvra2 c.37.1.20 (A:149-535) 27.4 83 0.006 31.7 8.8 22 165-186 311-332 (387)
5 d1k4ta1 a.2.8.1 (A:641-712) Eu 26.9 1.5E+02 0.011 24.1 8.4 61 103-163 1-69 (72)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 17.5 87 0.0063 25.0 5.3 42 369-410 44-88 (88)
7 d1qvra2 c.37.1.20 (A:149-535) 14.4 2.1E+02 0.015 28.6 8.5 45 349-393 285-329 (387)
8 d1bjta_ e.11.1.1 (A:) DNA topo 14.0 1.1E+02 0.008 33.6 6.6 21 194-214 738-758 (760)
9 d1nkpb_ a.38.1.1 (B:) Max prot 8.9 2.1E+02 0.015 22.3 5.1 31 380-410 53-83 (83)
10 d1yfua1 b.82.1.20 (A:1-174) 3- 8.5 38 0.0028 31.6 0.2 12 405-416 157-168 (174)
No 1
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.19 E-value=25 Score=32.55 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhHH
Q 003017 194 QQDREKFEKEWEVLDE 209 (857)
Q Consensus 194 k~eKekFE~EWE~LDE 209 (857)
......|...|+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~ 190 (300)
T d1f5na1 175 EEILQTYLKSKESMTD 190 (300)
T ss_dssp HHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334455555555443
No 2
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.63 E-value=41 Score=30.99 Aligned_cols=32 Identities=25% Similarity=0.136 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 003017 176 IETYRHQQELLLKEHEDLQQDREKFEKEWEVL 207 (857)
Q Consensus 176 Id~~R~Qke~LlkEae~Lk~eKekFE~EWE~L 207 (857)
+...+.....+..+...|++....++..|+.+
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~e~~ 237 (300)
T d1f5na1 206 IEVERVKAESAQASAKMLHEMQRKNEQMMEQK 237 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555544443
No 3
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}
Probab=68.94 E-value=28 Score=28.37 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHH
Q 003017 171 QLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEK 225 (857)
Q Consensus 171 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKR~el~KEa~~I~eEr 225 (857)
.+...+...+.....+......+......+......+..+...+......+....
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 160 (185)
T d2ap3a1 106 QLDDVLKEKYKLHSDYAKAYKKAVNSEKTLFKYLNQNDATQQGVNEKSKAIEQNY 160 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555555554444444333
No 4
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=27.38 E-value=83 Score=31.75 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 003017 165 LLRLQSQLKQQIETYRHQQELL 186 (857)
Q Consensus 165 ~lrLqseLKeEId~~R~Qke~L 186 (857)
.+.-..+||++|+.+|++.+..
T Consensus 311 ~l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 311 ILRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888888888876543
No 5
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.85 E-value=1.5e+02 Score=24.07 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=39.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHhHHHHHHHHHH---HHHhhhhccHHHHH
Q 003017 103 EKFVKAEEKKLELEKQKLIADKESLQILKVEID-----QIESENAQQELQIQ---EECQKLKINEEEKS 163 (857)
Q Consensus 103 EksLkaeEK~lE~ek~qL~~ekeel~~lK~elE-----K~~a~~e~q~~qi~---ee~e~LkiteeER~ 163 (857)
|+||.....+|...+.||..-+.++..++.+.- +++..++..+.++. +.--+|++..-+|.
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTDke 69 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 69 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 578888888888888888888888888887765 44555554444433 33334444444443
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.53 E-value=87 Score=25.03 Aligned_cols=42 Identities=12% Similarity=0.294 Sum_probs=26.8
Q ss_pred HhhhhhcHHHHHHH---HHHhhHhHHHHHHHHHHHHHHHHhhccc
Q 003017 369 QLGMRKDIDELDIL---CRRLYGDREQFKREKERFLEFVEKHTSC 410 (857)
Q Consensus 369 ~~em~kdIdeL~~l---s~KLk~QRE~~~~ERe~fl~~vEklK~c 410 (857)
+.-+..-|+-+..| -..|....+.+......+...+.+|.+|
T Consensus 44 ~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 44 VVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444443 3455556667777777888888888888
No 7
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=14.43 E-value=2.1e+02 Score=28.57 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhHhHHHHHHhhhhhcHHHHHHHHHHhhHhHHHH
Q 003017 349 DQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQF 393 (857)
Q Consensus 349 ~rLekEr~Ei~~~ke~le~q~~em~kdIdeL~~ls~KLk~QRE~~ 393 (857)
..++.+...+......|..+|...+..|+.+..|..+|.+.|..+
T Consensus 285 ~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr~~l 329 (387)
T d1qvra2 285 KAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREI 329 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777788889999999999999999998888877665
No 8
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.97 E-value=1.1e+02 Score=33.65 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhhHHhHHHH
Q 003017 194 QQDREKFEKEWEVLDEKRDEI 214 (857)
Q Consensus 194 k~eKekFE~EWE~LDEKR~el 214 (857)
+.+...|+++|....+++++-
T Consensus 738 ~~DL~~l~~~y~k~~~~~~e~ 758 (760)
T d1bjta_ 738 NTDLKAFEVGYQEFLQRDAEA 758 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 566678888888888877753
No 9
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.92 E-value=2.1e+02 Score=22.33 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=18.4
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHhhccc
Q 003017 380 DILCRRLYGDREQFKREKERFLEFVEKHTSC 410 (857)
Q Consensus 380 ~~ls~KLk~QRE~~~~ERe~fl~~vEklK~c 410 (857)
......|..+-+.+..+...+...|+.|..|
T Consensus 53 ~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 83 (83)
T d1nkpb_ 53 RRKNHTHQQDIDDLKRQNALLEQQVRALGGC 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3334445555555666666667777777666
No 10
>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}
Probab=8.53 E-value=38 Score=31.64 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=0.0
Q ss_pred Hhhccccchhhh
Q 003017 405 EKHTSCKNCGEM 416 (857)
Q Consensus 405 EklK~ckncg~~ 416 (857)
+.+++|++||.+
T Consensus 157 ee~RTC~~CG~v 168 (174)
T d1yfua1 157 EDKRRCPHCGQV 168 (174)
T ss_dssp HHHHBCTTTCCB
T ss_pred hhcccCCCCCCc
Done!